Query 025089
Match_columns 258
No_of_seqs 122 out of 216
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 03:31:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025089.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025089hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q77a_ c.26.2.4 (A:) Hypothet 28.3 57 0.0041 21.9 5.6 39 150-209 92-130 (138)
2 d2cjja1 a.4.1.3 (A:8-70) Radia 27.1 25 0.0018 22.7 3.2 31 134-165 6-36 (63)
3 d2cu7a1 a.4.1.3 (A:8-72) MYSM1 26.5 22 0.0016 22.8 2.8 27 134-165 7-33 (65)
4 d1gv2a2 a.4.1.3 (A:144-190) c- 23.3 30 0.0022 21.4 2.8 27 134-165 6-32 (47)
5 d1q6ha_ d.26.1.1 (A:) Peptidyl 19.3 1.1E+02 0.008 23.6 6.3 27 117-143 69-95 (210)
6 d1uala_ c.116.1.4 (A:) tRNA(m1 18.5 29 0.0021 29.1 2.6 18 79-96 203-220 (252)
7 d1g8qa_ a.135.1.1 (A:) CD81 ex 15.1 64 0.0047 22.7 3.4 27 104-134 4-31 (90)
8 d1o4va_ c.23.8.1 (A:) N5-CAIR 13.6 85 0.0062 24.5 4.1 21 79-99 136-156 (169)
9 d1m7va_ d.174.1.1 (A:) Nitric 13.0 86 0.0062 27.6 4.3 20 104-123 4-23 (363)
10 d2cqqa1 a.4.1.3 (A:8-66) DnaJ 12.6 71 0.0052 20.9 2.8 30 134-164 6-35 (59)
No 1
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}
Probab=28.28 E-value=57 Score=21.88 Aligned_cols=39 Identities=13% Similarity=0.070 Sum_probs=26.6
Q ss_pred cccCChHHHHHhhcCCCchhHHHhhhhhhccCCCcceeecCCCCCCCchhhHHHHHHHHh
Q 025089 150 EAYKNYWKAIAELIPNEVPAIEKKKAKRDQEKKPSIVVIQGPKPGKPTNLSRMRQIIIKL 209 (258)
Q Consensus 150 ~a~gt~WERVaeLIDle~p~~Ek~~~kkd~~Kk~~i~vi~gpK~gK~kDlSRMRqILLkL 209 (258)
...|..++.|.+++.- .+++++|+ |. +..+=+++||+..
T Consensus 92 v~~G~~~~~I~~~a~~---------------~~~DLIV~-Gs-----~g~~~l~r~l~g~ 130 (138)
T d1q77a_ 92 YRIGPLSEEVKKFVEG---------------KGYELVVW-AC-----YPSAYLCKVIDGL 130 (138)
T ss_dssp EECSCHHHHHHHHHTT---------------SCCSEEEE-CS-----CCGGGTHHHHHHS
T ss_pred eecchhHHHHHHhhhh---------------ccCCEEEE-ec-----CCCcHHHHHhcCC
Confidence 4569999999999975 36777777 53 2234456676643
No 2
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}
Probab=27.11 E-value=25 Score=22.72 Aligned_cols=31 Identities=13% Similarity=0.340 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhhhhhhcccCChHHHHHhhcCC
Q 025089 134 REREKLFVASQQKFHDEAYKNYWKAIAELIPN 165 (258)
Q Consensus 134 Re~Ek~FLa~re~F~~~a~gt~WERVaeLIDl 165 (258)
.++++.|+..-..|- ....+.|..|+++|.-
T Consensus 6 ~eEd~~L~~~v~~~~-~~~~~~W~~Ia~~l~g 36 (63)
T d2cjja1 6 AKENKAFERALAVYD-KDTPDRWANVARAVEG 36 (63)
T ss_dssp HHHHHHHHHHHHHSC-TTCTTHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHC-CCCchHHHHHHHHcCC
Confidence 456666666555542 2234579999999984
No 3
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.46 E-value=22 Score=22.79 Aligned_cols=27 Identities=30% Similarity=0.553 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhhhhhhcccCChHHHHHhhcCC
Q 025089 134 REREKLFVASQQKFHDEAYKNYWKAIAELIPN 165 (258)
Q Consensus 134 Re~Ek~FLa~re~F~~~a~gt~WERVaeLIDl 165 (258)
.++++.|+..-.. .|.-|..|++++.-
T Consensus 7 ~eEd~~l~~~~~~-----~G~~W~~Ia~~~~~ 33 (65)
T d2cu7a1 7 IEEKELFEQGLAK-----FGRRWTKISKLIGS 33 (65)
T ss_dssp HHHHHHHHHHHHH-----TCSCHHHHHHHHSS
T ss_pred HHHHHHHHHHHHH-----hcchHHHHHHHcCC
Confidence 4667777765544 37899999999874
No 4
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.30 E-value=30 Score=21.42 Aligned_cols=27 Identities=26% Similarity=0.690 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhhhhhhcccCChHHHHHhhcCC
Q 025089 134 REREKLFVASQQKFHDEAYKNYWKAIAELIPN 165 (258)
Q Consensus 134 Re~Ek~FLa~re~F~~~a~gt~WERVaeLIDl 165 (258)
.++++.++..... .|+-|..|+++++-
T Consensus 6 ~eED~~L~~~v~~-----~G~~W~~Ia~~~~g 32 (47)
T d1gv2a2 6 EEEDRIIYQAHKR-----LGNRWAEIAKLLPG 32 (47)
T ss_dssp HHHHHHHHHHHHH-----HSSCHHHHHTTCTT
T ss_pred HHHHHHHHHHHHH-----HhhHHHHHHhHcCC
Confidence 3555555554443 37889999998863
No 5
>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}
Probab=19.25 E-value=1.1e+02 Score=23.59 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHh
Q 025089 117 EFYRKSIVTRENNKASNREREKLFVAS 143 (258)
Q Consensus 117 ~FY~~rn~kkEknk~~NRe~Ek~FLa~ 143 (258)
.+++.++.++.+..+.|++..+.|+++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (210)
T d1q6ha_ 69 RVKSSAQAKMEKDAADNEAKGKEYREK 95 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHhhhhHHHHHHh
Confidence 355666666677777788888888864
No 6
>d1uala_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Haemophilus influenzae [TaxId: 727]}
Probab=18.54 E-value=29 Score=29.13 Aligned_cols=18 Identities=17% Similarity=0.348 Sum_probs=14.1
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 025089 79 GFALREWRRENAIRLEEK 96 (258)
Q Consensus 79 pE~IReWREe~a~rIeEK 96 (258)
=..|++||.+++.+.-.+
T Consensus 203 H~~I~~Wr~~~sl~~T~~ 220 (252)
T d1uala_ 203 HEEIRKWRLKQSLQRTWL 220 (252)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 358999999998876544
No 7
>d1g8qa_ a.135.1.1 (A:) CD81 extracellular domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.07 E-value=64 Score=22.71 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHhHHhhH
Q 025089 104 LNQIIEEAEEYKLEFYRK-SIVTRENNKASNR 134 (258)
Q Consensus 104 keqi~kEAee~id~FY~~-rn~kkEknk~~NR 134 (258)
+.+++++..+ ||.. |+.-+......|.
T Consensus 4 kd~V~~ev~~----FY~~~Y~~y~~~~~~~~~ 31 (90)
T d1g8qa_ 4 KDQIAKDVKQ----FYDQALQQAVVDDDANNA 31 (90)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHCTTCHHH
T ss_pred hhHHHHHHHH----HHHHHHHHHhhcCCcchH
Confidence 5677777777 6666 6655444444443
No 8
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]}
Probab=13.56 E-value=85 Score=24.54 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=15.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHH
Q 025089 79 GFALREWRRENAIRLEEKEKK 99 (258)
Q Consensus 79 pE~IReWREe~a~rIeEKD~~ 99 (258)
-+.|++||+++.+.+.+++++
T Consensus 136 ~~kl~~~r~~~~~~v~~~~~~ 156 (169)
T d1o4va_ 136 ARKVKEYKERMKREVLEKAQR 156 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 347888888888888776654
No 9
>d1m7va_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Bacillus subtilis [TaxId: 1423]}
Probab=12.97 E-value=86 Score=27.55 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025089 104 LNQIIEEAEEYKLEFYRKSI 123 (258)
Q Consensus 104 keqi~kEAee~id~FY~~rn 123 (258)
.+.++++|+++|++||.+.+
T Consensus 4 ~e~l~~eA~~Fi~~~y~e~~ 23 (363)
T d1m7va_ 4 MEILWNEAKAFIAECYQELG 23 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 46788999999999998754
No 10
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.61 E-value=71 Score=20.90 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhhhhhhcccCChHHHHHhhcC
Q 025089 134 REREKLFVASQQKFHDEAYKNYWKAIAELIP 164 (258)
Q Consensus 134 Re~Ek~FLa~re~F~~~a~gt~WERVaeLID 164 (258)
+++.+.|......|-.. ...-|++|++.|.
T Consensus 6 ~ee~~~le~Al~~~P~g-t~~RW~~IA~~vg 35 (59)
T d2cqqa1 6 EEDLSQLTRSMVKFPGG-TPGRWEKIAHELG 35 (59)
T ss_dssp HHHHHHHHHHHHHSCTT-CTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCC-CcHHHHHHHHHHC
Confidence 45556666666676532 2468999999985
Done!