BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>025094
MATSNDKLQKMELRQNYQNLWHTDLMHTVTQDPPYCCFSCICGPCVSYLLRKRALYNDMS
RYVCCAGYMPCSGKCGESKCPEICLATEVFCCFANSVASTRFLLQDEFNIQTTACDNCII
GFMFCLSQLACIFSLVACIVGSDELQEASQILNLLADLVYCTVCACMQTQHKVEMDKRDG
KFGPQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYPPPQGQGYPA
GGYPPPAYNQGHYPPPTH

High Scoring Gene Products

Symbol, full name Information P value
AT1G63830 protein from Arabidopsis thaliana 2.9e-96
AT5G41390 protein from Arabidopsis thaliana 2.3e-94
AT4G23470 protein from Arabidopsis thaliana 2.1e-91

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  025094
        (258 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2195508 - symbol:AT1G63830 "AT1G63830" species...   957  2.9e-96   1
TAIR|locus:2177921 - symbol:AT5G41390 "AT5G41390" species...   939  2.3e-94   1
TAIR|locus:2117934 - symbol:AT4G23470 species:3702 "Arabi...   911  2.1e-91   1


>TAIR|locus:2195508 [details] [associations]
            symbol:AT1G63830 "AT1G63830" species:3702 "Arabidopsis
            thaliana" [GO:0016020 "membrane" evidence=ISS] [GO:0005886 "plasma
            membrane" evidence=IDA] EMBL:CP002684 GenomeReviews:CT485782_GR
            GO:GO:0005886 InterPro:IPR006461 Pfam:PF04749 EMBL:AC010852
            EMBL:AY080856 EMBL:AY117304 IPI:IPI00532466 PIR:D96663
            RefSeq:NP_001185304.1 RefSeq:NP_176568.1 RefSeq:NP_974084.1
            UniGene:At.36076 STRING:Q9CAJ7 PaxDb:Q9CAJ7 PRIDE:Q9CAJ7
            EnsemblPlants:AT1G63830.1 EnsemblPlants:AT1G63830.2
            EnsemblPlants:AT1G63830.3 GeneID:842686 KEGG:ath:AT1G63830
            TAIR:At1g63830 eggNOG:NOG126627 HOGENOM:HOG000243552
            InParanoid:Q9CAJ7 OMA:CCISCLC PhylomeDB:Q9CAJ7
            ProtClustDB:CLSN2682607 ArrayExpress:Q9CAJ7 Genevestigator:Q9CAJ7
            Uniprot:Q9CAJ7
        Length = 232

 Score = 957 (341.9 bits), Expect = 2.9e-96, P = 2.9e-96
 Identities = 169/206 (82%), Positives = 184/206 (89%)

Query:     1 MATSNDKLQKMELRQNYQNLWHTDLMHTVTQDPPYCCFSCICGPCVSYLLRKRALYNDMS 60
             MA S DKL KM+LRQ+Y+NLWH+DLM TVT D PYCC SC+CGPCVSY+LR+RALYNDMS
Sbjct:     1 MAASQDKLDKMKLRQDYRNLWHSDLMGTVTADTPYCCISCLCGPCVSYMLRRRALYNDMS 60

Query:    61 RYVCCAGYMPCSGKCGESKCPEICLATEVFCCFANSVASTRFLLQDEFNIQTTACDNCII 120
             RY CCAGYMPCSG+CGESKCP++CLATEVF CF NSVASTRFLLQDEFNIQTT CDNCII
Sbjct:    61 RYTCCAGYMPCSGRCGESKCPQLCLATEVFLCFGNSVASTRFLLQDEFNIQTTQCDNCII 120

Query:   121 GFMFCLSQLACIFSLVACIVGSDELQEASQILNLLADLVYCTVCACMQTQHKVEMDKRDG 180
             GFMFCLSQ+ACIFS+VACIVGSDEL EASQIL+  AD+VYCTVCACMQTQHK+EMDKRDG
Sbjct:   121 GFMFCLSQVACIFSIVACIVGSDELSEASQILSCCADMVYCTVCACMQTQHKLEMDKRDG 180

Query:   181 KFGPQPMAVPPHQQMSRIDQPYPATV 206
              FG QPM VPP QQMSR DQP P  V
Sbjct:   181 VFGSQPMGVPPAQQMSRFDQPVPPPV 206


>TAIR|locus:2177921 [details] [associations]
            symbol:AT5G41390 "AT5G41390" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005886
            "plasma membrane" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002688 InterPro:IPR006461 Pfam:PF04749
            EMBL:DQ132736 EMBL:DQ447027 IPI:IPI00852341 RefSeq:NP_198955.2
            UniGene:At.55296 PRIDE:Q45GG6 EnsemblPlants:AT5G41390.1
            GeneID:834141 KEGG:ath:AT5G41390 TAIR:At5g41390 InParanoid:Q45GG6
            OMA:CSCMQTQ PhylomeDB:Q45GG6 ProtClustDB:CLSN2920547
            Genevestigator:Q45GG6 Uniprot:Q45GG6
        Length = 264

 Score = 939 (335.6 bits), Expect = 2.3e-94, P = 2.3e-94
 Identities = 166/203 (81%), Positives = 181/203 (89%)

Query:     1 MATSNDKLQKMELRQNYQNLWHTDLMHTVTQDPPYCCFSCICGPCVSYLLRKRALYNDMS 60
             MA S DKL KM+LRQ+Y+NLWH+DLM TV+ D PYC FSC+CGPCVSYLLRKRALYNDMS
Sbjct:     1 MARSQDKLDKMQLRQSYRNLWHSDLMGTVSADTPYCFFSCLCGPCVSYLLRKRALYNDMS 60

Query:    61 RYVCCAGYMPCSGKCGESKCPEICLATEVFCCFANSVASTRFLLQDEFNIQTTACDNCII 120
             RY CC GYMPCSGKCGESKCP+ CLATEV  CF NSVASTRF+LQDEFNI TT CDNCII
Sbjct:    61 RYTCCGGYMPCSGKCGESKCPQFCLATEVCLCFGNSVASTRFMLQDEFNIHTTKCDNCII 120

Query:   121 GFMFCLSQLACIFSLVACIVGSDELQEASQILNLLADLVYCTVCACMQTQHKVEMDKRDG 180
             GFMFCL+Q+ACIFSLVACIVGSDEL EASQ+L+ LAD+VYCTVCACMQTQHK+EMDKRDG
Sbjct:   121 GFMFCLNQIACIFSLVACIVGSDELSEASQLLSCLADMVYCTVCACMQTQHKIEMDKRDG 180

Query:   181 KFGPQPMAVPPHQQMSRIDQPYP 203
                PQPM+VPP QQMSRIDQP P
Sbjct:   181 LISPQPMSVPPAQQMSRIDQPVP 203


>TAIR|locus:2117934 [details] [associations]
            symbol:AT4G23470 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0006970 "response to
            osmotic stress" evidence=RCA] [GO:0009697 "salicylic acid
            biosynthetic process" evidence=RCA] [GO:0009863 "salicylic acid
            mediated signaling pathway" evidence=RCA] [GO:0010167 "response to
            nitrate" evidence=RCA] [GO:0015706 "nitrate transport"
            evidence=RCA] [GO:0031348 "negative regulation of defense response"
            evidence=RCA] [GO:0045087 "innate immune response" evidence=RCA]
            [GO:0046686 "response to cadmium ion" evidence=RCA] [GO:0048767
            "root hair elongation" evidence=RCA] EMBL:CP002687
            InterPro:IPR006461 Pfam:PF04749 EMBL:AY062834 EMBL:AY081590
            EMBL:AK175352 EMBL:AK175512 EMBL:AK176121 EMBL:AK176265
            EMBL:AK176490 EMBL:AK220854 EMBL:AK230441 IPI:IPI00534630
            RefSeq:NP_194078.2 UniGene:At.32426 STRING:Q8W458 PRIDE:Q8W458
            EnsemblPlants:AT4G23470.1 GeneID:828446 KEGG:ath:AT4G23470
            TAIR:At4g23470 InParanoid:Q8W458 OMA:FGPQPMA PhylomeDB:Q8W458
            ProtClustDB:CLSN2690322 Genevestigator:Q8W458 Uniprot:Q8W458
        Length = 255

 Score = 911 (325.7 bits), Expect = 2.1e-91, P = 2.1e-91
 Identities = 158/199 (79%), Positives = 177/199 (88%)

Query:     8 LQKMELRQNYQNLWHTDLMHTVTQDPPYCCFSCICGPCVSYLLRKRALYNDMSRYVCCAG 67
             ++KMELR+N++N+WHTDL H++  D PYCCF+  C PC SYLLRKRALY+DMSRYVCCAG
Sbjct:     6 MEKMELRKNFRNVWHTDLTHSIQNDTPYCCFALWCAPCASYLLRKRALYDDMSRYVCCAG 65

Query:    68 YMPCSGKCGESKCPEICLATEVFCCFANSVASTRFLLQDEFNIQTTACDNCIIGFMFCLS 127
             YMPCSG+CGE+KCP++CLATEVFCCFANSVASTRFLLQDEF IQTT CDNCIIGFM CLS
Sbjct:    66 YMPCSGRCGEAKCPQLCLATEVFCCFANSVASTRFLLQDEFQIQTTKCDNCIIGFMVCLS 125

Query:   128 QLACIFSLVACIVGSDELQEASQILNLLADLVYCTVCACMQTQHKVEMDKRDGKFGPQPM 187
             Q+ACIFS+VACIVG DEL EASQIL   +D+VYCTVCACMQTQHK+EMDKRDGKFGPQPM
Sbjct:   126 QVACIFSIVACIVGMDELSEASQILTCCSDMVYCTVCACMQTQHKMEMDKRDGKFGPQPM 185

Query:   188 AVPPHQQMSRIDQPYPATV 206
             AVPP QQMSR DQ  P  V
Sbjct:   186 AVPPAQQMSRFDQATPPAV 204


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.137   0.461    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      258       216   0.00088  112 3  11 22  0.43    32
                                                     32  0.50    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  202 KB (2111 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.72u 0.09s 19.81t   Elapsed:  00:00:01
  Total cpu time:  19.72u 0.09s 19.81t   Elapsed:  00:00:01
  Start:  Thu May  9 15:17:30 2013   End:  Thu May  9 15:17:31 2013

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