BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025094
(258 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|C0ZPK5|FTSH_RHOE4 ATP-dependent zinc metalloprotease FtsH OS=Rhodococcus erythropolis
(strain PR4 / NBRC 100887) GN=ftsH PE=3 SV=1
Length = 854
Score = 45.4 bits (106), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 33/76 (43%), Gaps = 10/76 (13%)
Query: 184 PQPMAVPPHQQMSRIDQPYPATVGYPPQQQAYGYPPQGYPPPQGQGYPPPQGQGYPAGGY 243
PQP A P Q QP G P A G+PP+ P P YP Q GY G
Sbjct: 694 PQPSA--PQQT----PQPGTPDYGAPAGWSAPGWPPRENPSPT---YPGQQSGGYTGGQN 744
Query: 244 P-PPAYNQGHYPPPTH 258
P PP +QG Y P H
Sbjct: 745 PTPPNQSQGQYGQPQH 760
Score = 31.2 bits (69), Expect = 8.6, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 170 QHKVEMDKRDGKFGPQPMAVPPHQQMSRIDQPYPATVGYPPQ-QQAYGYPPQ-GYPP--P 225
Q+ ++ G++G QP P + QP+P YP Q YP Q YP P
Sbjct: 743 QNPTPPNQSQGQYG-QPQHGQPQPDQGQYGQPHPGQQAYPEQPHPGRRYPAQPDYPVQYP 801
Query: 226 QGQGYPPPQGQGYPAG 241
G + P +G P+G
Sbjct: 802 DGGPFADPN-RGNPSG 816
>sp|P37705|GRP3_DAUCA Glycine-rich protein A3 OS=Daucus carota PE=2 SV=1
Length = 195
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 33/56 (58%), Gaps = 8/56 (14%)
Query: 203 PATVGYPPQQ---QAYGYPPQGYPPPQGQGYPP----PQGQGYPAGGYPPPAYNQG 251
PA GYPPQ GYPPQGYPP G GYPP P G GYP GYPP ++ G
Sbjct: 35 PAAGGYPPQGYPPAGGGYPPQGYPP-AGGGYPPQGYPPAGGGYPPQGYPPAGHHSG 89
>sp|Q9CD58|FTSH_MYCLE ATP-dependent zinc metalloprotease FtsH OS=Mycobacterium leprae
(strain TN) GN=ftsH PE=3 SV=1
Length = 787
Score = 35.8 bits (81), Expect = 0.33, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 36/98 (36%), Gaps = 17/98 (17%)
Query: 178 RDGKFGP-QP-MAVPPHQQMSRIDQPYPATVGYPPQQQAYGYP--PQGYPPPQGQG---- 229
R + GP QP PP P YPP+QQ P PQ P GQ
Sbjct: 689 RQRQHGPTQPDYGAPPGWHAPGWPPQQPPDYWYPPEQQPSQSPYWPQPAPSYPGQAPPPY 748
Query: 230 -------YPPPQGQGYPAGGYPPPAYNQGHYP--PPTH 258
PP GQ P G PP ++G P PP H
Sbjct: 749 PSYPPCPSYPPPGQSAPDAGKPPAQLDEGVSPSNPPAH 786
>sp|Q2H922|PAN1_CHAGB Actin cytoskeleton-regulatory complex protein PAN1 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) GN=PAN1 PE=3 SV=1
Length = 1450
Score = 35.0 bits (79), Expect = 0.57, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 209 PPQQQAYGYP----PQGYPPPQGQGYPPPQGQGYPAGGYPPPA 247
P QQQ GYP PQG PQ GY QG G P PA
Sbjct: 50 PLQQQYTGYPGLQAPQGQLQPQFTGYGQTPQQGMATGAPPMPA 92
>sp|Q9WU78|PDC6I_MOUSE Programmed cell death 6-interacting protein OS=Mus musculus
GN=Pdcd6ip PE=1 SV=3
Length = 869
Score = 33.9 bits (76), Expect = 1.1, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 11/57 (19%)
Query: 203 PATVGYPPQQQAYG-----YPPQGYPPPQGQGYPPPQGQGYPAGGYPPPAYNQGHYP 254
P +GY P AYG YPP + P YP PQ YP +P P Q +YP
Sbjct: 817 PMPMGYNPY--AYGQYNMPYPPVYHQSPGQAPYPGPQQPTYP---FPQPP-QQSYYP 867
>sp|Q8WUM4|PDC6I_HUMAN Programmed cell death 6-interacting protein OS=Homo sapiens
GN=PDCD6IP PE=1 SV=1
Length = 868
Score = 33.9 bits (76), Expect = 1.2, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 11/57 (19%)
Query: 203 PATVGYPPQQQAYG-----YPPQGYPPPQGQGYPPPQGQGYPAGGYPPPAYNQGHYP 254
P +GY P AYG YPP + P YP PQ YP +P P Q +YP
Sbjct: 816 PMPMGYNPY--AYGQYNMPYPPVYHQSPGQAPYPGPQQPSYP---FPQPP-QQSYYP 866
>sp|Q32L53|LFG1_BOVIN Protein lifeguard 1 OS=Bos taurus GN=GRINA PE=2 SV=1
Length = 366
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 23/39 (58%), Gaps = 8/39 (20%)
Query: 217 YPPQGYPPPQGQG-YPPPQGQGYPAGGYPPPAYNQGHYP 254
YPP GYP QG YPP GYP G YPP Y QG YP
Sbjct: 69 YPPGGYP----QGPYPP---GGYPQGPYPPGGYPQGPYP 100
>sp|P35085|CBPP_DICDI Calcium-binding protein P OS=Dictyostelium discoideum GN=cbpP PE=2
SV=2
Length = 467
Score = 31.6 bits (70), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 35/72 (48%), Gaps = 22/72 (30%)
Query: 202 YPATVGYPPQQQAY--------GYPPQGYP---PPQGQ--GYPPPQ------GQGYPAGG 242
YP G PPQQ AY YPPQG P PPQGQ YPP Q GQ P G
Sbjct: 216 YPGQPGVPPQQGAYPGQQPPMGAYPPQGQPGAYPPQGQPGAYPPQQQQVAYPGQQPPMGA 275
Query: 243 YPPPAYNQGHYP 254
YPP QG YP
Sbjct: 276 YPP---QQGAYP 284
>sp|P71590|FHAA_MYCTU FHA domain-containing protein FhaA OS=Mycobacterium tuberculosis
GN=fhaA PE=1 SV=1
Length = 527
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 45/100 (45%), Gaps = 28/100 (28%)
Query: 180 GKFGPQPMAVPPHQQMSRIDQP----YPATVGYP-----PQQQAY----GYPPQ------ 220
G + P+ PP R P YP +GYP P+Q+ Y GYP Q
Sbjct: 200 GGYPPETGGYPPQPGYPRPRHPDQGDYPEQIGYPDQGGYPEQRGYPEQRGYPDQRGYQDQ 259
Query: 221 --GYPPPQGQG-YPPPQGQG-----YPAGGYPPPAYNQGH 252
GYP QGQG YPPP Q PA GY P Y+QG+
Sbjct: 260 GRGYPD-QGQGGYPPPYEQRPPVSPGPAAGYGAPGYDQGY 298
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.472
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,949,346
Number of Sequences: 539616
Number of extensions: 5679161
Number of successful extensions: 30839
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 838
Number of HSP's that attempted gapping in prelim test: 19422
Number of HSP's gapped (non-prelim): 6309
length of query: 258
length of database: 191,569,459
effective HSP length: 115
effective length of query: 143
effective length of database: 129,513,619
effective search space: 18520447517
effective search space used: 18520447517
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)