Query 025094
Match_columns 258
No_of_seqs 164 out of 202
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 02:38:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025094.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025094hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04749 PLAC8: PLAC8 family; 99.3 9.9E-13 2.1E-17 102.1 3.7 101 21-144 1-105 (106)
2 TIGR01571 A_thal_Cys_rich unch 99.2 9.6E-12 2.1E-16 99.3 3.8 101 19-146 1-103 (104)
3 KOG1924 RhoA GTPase effector D 97.6 0.00026 5.7E-09 74.1 8.5 7 173-179 495-501 (1102)
4 KOG1924 RhoA GTPase effector D 96.6 0.007 1.5E-07 63.8 8.4 8 148-155 456-463 (1102)
5 PF13908 Shisa: Wnt and FGF in 94.7 0.23 4.9E-06 42.7 8.6 6 19-24 13-18 (179)
6 KOG2893 Zn finger protein [Gen 94.2 0.29 6.3E-06 46.0 8.7 11 134-144 64-74 (341)
7 PF10349 WWbp: WW-domain ligan 72.5 23 0.0005 29.0 7.6 10 170-179 25-34 (116)
8 TIGR01571 A_thal_Cys_rich unch 71.7 5.2 0.00011 31.9 3.5 86 84-177 15-104 (104)
9 KOG1923 Rac1 GTPase effector F 66.4 75 0.0016 34.4 11.5 43 140-184 200-242 (830)
10 PF04749 PLAC8: PLAC8 family; 61.0 7 0.00015 29.9 2.3 86 85-175 14-106 (106)
11 KOG0132 RNA polymerase II C-te 53.2 68 0.0015 34.9 8.5 10 112-121 479-488 (894)
12 PF13908 Shisa: Wnt and FGF in 42.1 1.8E+02 0.0039 24.9 8.2 8 34-41 27-34 (179)
13 TIGR01628 PABP-1234 polyadenyl 33.5 2.5E+02 0.0054 28.0 8.8 11 143-153 334-344 (562)
14 PF10873 DUF2668: Protein of u 29.7 1.8E+02 0.0039 25.6 6.1 11 196-206 109-119 (155)
15 KOG2391 Vacuolar sorting prote 29.3 1.4E+02 0.003 29.6 5.9 8 107-114 100-107 (365)
16 PF04066 MrpF_PhaF: Multiple r 27.1 1.6E+02 0.0034 20.9 4.5 39 117-155 3-41 (55)
17 KOG2375 Protein interacting wi 25.6 2.1E+02 0.0046 31.0 6.9 9 188-196 560-568 (756)
18 KOG2199 Signal transducing ada 24.7 2.2E+02 0.0048 28.9 6.5 9 48-56 214-222 (462)
19 PF09849 DUF2076: Uncharacteri 24.0 4.4E+02 0.0094 24.6 8.0 26 142-167 23-51 (247)
20 TIGR00859 ENaC sodium channel 22.1 7.1E+02 0.015 25.8 9.8 46 122-168 488-533 (595)
No 1
>PF04749 PLAC8: PLAC8 family; InterPro: IPR006461 This group of sequences are described by a region of about 170 amino acids. These proteins have highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterised protein. It is common in plants but found also in Homo sapiens (Human), Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.
Probab=99.32 E-value=9.9e-13 Score=102.05 Aligned_cols=101 Identities=27% Similarity=0.509 Sum_probs=70.0
Q ss_pred ccccccccccCCCCcccccccchhHHHHHHHHHHhhcCC-Ccccc---cCCCCcccccccccCCCCchhhhhhhccccch
Q 025094 21 WHTDLMHTVTQDPPYCCFSCICGPCVSYLLRKRALYNDM-SRYVC---CAGYMPCSGKCGESKCPEICLATEVFCCFANS 96 (258)
Q Consensus 21 W~t~m~~apc~~p~~Cc~s~~C~pC~~y~~R~r~L~~dm-s~Y~C---C~G~~~C~g~Cge~~cp~~CLc~Ev~cC~~~a 96 (258)
|++||+++ ++|+..|++++|| ||+++...+++|+++. +++.. |.+...+.+... ++ . + .+..
T Consensus 1 W~~gl~~C-~~d~~~c~~~~~c-Pc~~~~~~~~~l~~~~~~~~~~~~~C~~~~~~~~~~~---------~~-~-l-~~~~ 66 (106)
T PF04749_consen 1 WSTGLCDC-FSDPGSCCLACFC-PCCSFGQNAERLGDGPRSRGPAFGSCCLCFCCFGCAA---------CL-G-L-GWCY 66 (106)
T ss_pred CCCCCCCc-CCChHHHHHHHHH-HHHHHHHHHHHhccCCccCCCCCccHHHHHHHHHHHH---------HH-H-H-hHhh
Confidence 99999998 9999999999998 7889998888887655 44422 222110000000 00 0 1 1224
Q ss_pred hhhhHHHHHHHhCCCCCCccchhhhhhhhhhHHHHHhHHhHHHhcCcc
Q 025094 97 VASTRFLLQDEFNIQTTACDNCIIGFMFCLSQLACIFSLVACIVGSDE 144 (258)
Q Consensus 97 v~~tR~~iqd~~~lq~d~CDncii~~~~c~q~laCic~~~A~~~g~~~ 144 (258)
...+|..||+||||+++.++|++.. ++|...|+++..+|
T Consensus 67 ~~~~R~~iR~ry~I~g~~~~D~~~~---------~~C~~Cal~Q~~rE 105 (106)
T PF04749_consen 67 GCSLRQQIRERYGIQGSCCEDCCCS---------CCCPPCALCQEARE 105 (106)
T ss_pred hhhHHHHHHHHhCCCCCChhhhHHH---------HHHHHHHHHHHHhh
Confidence 5999999999999999999999865 58886666654444
No 2
>TIGR01571 A_thal_Cys_rich uncharacterized Cys-rich domain. This model describes an uncharacterized domain of about 100 residues. It is common in plants but found also in Homo sapiens, Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.
Probab=99.21 E-value=9.6e-12 Score=99.29 Aligned_cols=101 Identities=23% Similarity=0.452 Sum_probs=70.5
Q ss_pred CcccccccccccCCCCcccccccchhHHHHHHHHHHhhcCCCcccccCCCCcccccccccCCCCchhhhhh-hccc-cch
Q 025094 19 NLWHTDLMHTVTQDPPYCCFSCICGPCVSYLLRKRALYNDMSRYVCCAGYMPCSGKCGESKCPEICLATEV-FCCF-ANS 96 (258)
Q Consensus 19 n~W~t~m~~apc~~p~~Cc~s~~C~pC~~y~~R~r~L~~dms~Y~CC~G~~~C~g~Cge~~cp~~CLc~Ev-~cC~-~~a 96 (258)
++|+|||+++ ++|++.|++++|| ||++++...+.+.... + .|.... +.+.+-. .+.+ +..
T Consensus 1 ~~W~~gL~dC-~~d~~~C~~~~~C-Pc~~~g~~~~~~~~~~-------~------~C~~~~---~~~~~~~~~~~~~~~~ 62 (104)
T TIGR01571 1 SNWSTGLFDC-CEDIRLCLCGLFC-PCCLFGQIAETLGTFA-------G------ECLCGG---LTAIAMSALCGFCGCY 62 (104)
T ss_pred CCCCCCCccc-cCChhHHHHHHHH-HHHHHHHHHHHhCCCC-------C------chhhHH---HHHHHHHHHHhHHHHH
Confidence 5799999999 9999999999999 6889997777775111 1 111100 1111111 2222 234
Q ss_pred hhhhHHHHHHHhCCCCCCccchhhhhhhhhhHHHHHhHHhHHHhcCcchH
Q 025094 97 VASTRFLLQDEFNIQTTACDNCIIGFMFCLSQLACIFSLVACIVGSDELQ 146 (258)
Q Consensus 97 v~~tR~~iqd~~~lq~d~CDncii~~~~c~q~laCic~~~A~~~g~~~l~ 146 (258)
...+|.-||+||||+++.|+|+++. |+|+..|+++..+||+
T Consensus 63 ~~~~R~~~R~ry~i~gs~~~D~~~~---------~~C~~C~lcQ~~RElk 103 (104)
T TIGR01571 63 TCFIRIKLREKYGIQGAPCDDCLTH---------LFCCFCALCQEHRELK 103 (104)
T ss_pred HHHHHHHHHHHhCCCCCCcccchHH---------HHhhhHHHHHHHHHHh
Confidence 5789999999999999999999865 6888777776666654
No 3
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.56 E-value=0.00026 Score=74.05 Aligned_cols=7 Identities=29% Similarity=0.662 Sum_probs=3.4
Q ss_pred hhhhccc
Q 025094 173 VEMDKRD 179 (258)
Q Consensus 173 ~em~~rd 179 (258)
.||.+++
T Consensus 495 ael~k~e 501 (1102)
T KOG1924|consen 495 AELQKHE 501 (1102)
T ss_pred HHHHHhh
Confidence 3455554
No 4
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.64 E-value=0.007 Score=63.81 Aligned_cols=8 Identities=0% Similarity=0.439 Sum_probs=3.1
Q ss_pred HHHHHHhh
Q 025094 148 ASQILNLL 155 (258)
Q Consensus 148 ~a~~ldci 155 (258)
++.+||-+
T Consensus 456 ~~~liD~~ 463 (1102)
T KOG1924|consen 456 LTELIDKM 463 (1102)
T ss_pred HHHHHHHH
Confidence 33344433
No 5
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=94.65 E-value=0.23 Score=42.72 Aligned_cols=6 Identities=17% Similarity=0.756 Sum_probs=2.6
Q ss_pred Cccccc
Q 025094 19 NLWHTD 24 (258)
Q Consensus 19 n~W~t~ 24 (258)
+.|+.+
T Consensus 13 g~~~~~ 18 (179)
T PF13908_consen 13 GQWDPG 18 (179)
T ss_pred CCCccC
Confidence 444444
No 6
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=94.16 E-value=0.29 Score=45.99 Aligned_cols=11 Identities=27% Similarity=0.519 Sum_probs=4.9
Q ss_pred HHhHHHhcCcc
Q 025094 134 SLVACIVGSDE 144 (258)
Q Consensus 134 ~~~A~~~g~~~ 144 (258)
.|-|.+-|+++
T Consensus 64 ~ip~av~gr~~ 74 (341)
T KOG2893|consen 64 KIPAAVHGRDN 74 (341)
T ss_pred cccccccCCcc
Confidence 34444444443
No 7
>PF10349 WWbp: WW-domain ligand protein; InterPro: IPR018826 This entry represents a sequence domain found in WW domain-binding protein that is characterised by several short PY and PT-like motifs of the PPPPY form. These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis []. This domain lies just downstream of IPR004182 from INTERPRO in many sequences.
Probab=72.53 E-value=23 Score=29.02 Aligned_cols=10 Identities=20% Similarity=0.361 Sum_probs=4.7
Q ss_pred hhhhhhhccc
Q 025094 170 QHKVEMDKRD 179 (258)
Q Consensus 170 Q~~~em~~rd 179 (258)
|+-++|+.|-
T Consensus 25 q~~~~~~~~a 34 (116)
T PF10349_consen 25 QAMLRLAERA 34 (116)
T ss_pred HHHHHHHHHH
Confidence 4444455543
No 8
>TIGR01571 A_thal_Cys_rich uncharacterized Cys-rich domain. This model describes an uncharacterized domain of about 100 residues. It is common in plants but found also in Homo sapiens, Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.
Probab=71.72 E-value=5.2 Score=31.90 Aligned_cols=86 Identities=14% Similarity=0.151 Sum_probs=41.0
Q ss_pred hhhhhhhccccchhhhhHHHHHHHhCCCCCCccchhhhhhhhhhHHHHHh--HHhHHHhcCcchHHHHHHHH-hhhhhHH
Q 025094 84 CLATEVFCCFANSVASTRFLLQDEFNIQTTACDNCIIGFMFCLSQLACIF--SLVACIVGSDELQEASQILN-LLADLVY 160 (258)
Q Consensus 84 CLc~Ev~cC~~~av~~tR~~iqd~~~lq~d~CDncii~~~~c~q~laCic--~~~A~~~g~~~l~~~a~~ld-ciAD~vy 160 (258)
=+|+++++|+.+.+.-+ .++++..+ ..|...+.+- =.++-|+ ..+....-+.++|+-=+|-. .+.|++.
T Consensus 15 ~~C~~~~~CPc~~~g~~----~~~~~~~~---~~C~~~~~~~-~~~~~~~~~~~~~~~~~R~~~R~ry~i~gs~~~D~~~ 86 (104)
T TIGR01571 15 RLCLCGLFCPCCLFGQI----AETLGTFA---GECLCGGLTA-IAMSALCGFCGCYTCFIRIKLREKYGIQGAPCDDCLT 86 (104)
T ss_pred hHHHHHHHHHHHHHHHH----HHHhCCCC---CchhhHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHhCCCCCCcccchH
Confidence 35667888887665444 33344222 2333322110 0111122 22222222344443333332 4577744
Q ss_pred HH-hhhhhhhhhhhhhhc
Q 025094 161 CT-VCACMQTQHKVEMDK 177 (258)
Q Consensus 161 c~-v~~Cm~aQ~~~em~~ 177 (258)
.. ...|.+.|+.+|||.
T Consensus 87 ~~~C~~C~lcQ~~RElk~ 104 (104)
T TIGR01571 87 HLFCCFCALCQEHRELKM 104 (104)
T ss_pred HHHhhhHHHHHHHHHHhC
Confidence 44 445899999999983
No 9
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=66.42 E-value=75 Score=34.37 Aligned_cols=43 Identities=12% Similarity=0.075 Sum_probs=28.1
Q ss_pred hcCcchHHHHHHHHhhhhhHHHHhhhhhhhhhhhhhhcccCCCCC
Q 025094 140 VGSDELQEASQILNLLADLVYCTVCACMQTQHKVEMDKRDGKFGP 184 (258)
Q Consensus 140 ~g~~~l~~~a~~ldciAD~vyc~v~~Cm~aQ~~~em~~rd~~~~~ 184 (258)
.-+.|.+.++.+...+.|-+-++ -||.-+.+.+||.|+.+...
T Consensus 200 sl~~er~~~~~~~~~~~dels~m--~k~~~~~e~~lk~~~~~l~~ 242 (830)
T KOG1923|consen 200 SLNKEREPQSYQRKALLDELSCM--QKLSIEKERSLKAIARLLET 242 (830)
T ss_pred hhhhhhhHHHHHHHHhcchhHHH--HHHHHHHHHHHHHHHHhccC
Confidence 33456666677777777776333 46777888899887654443
No 10
>PF04749 PLAC8: PLAC8 family; InterPro: IPR006461 This group of sequences are described by a region of about 170 amino acids. These proteins have highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterised protein. It is common in plants but found also in Homo sapiens (Human), Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.
Probab=60.95 E-value=7 Score=29.94 Aligned_cols=86 Identities=20% Similarity=0.230 Sum_probs=42.1
Q ss_pred hhhhhhccccchhhhhHHHHHHHhCCCCCCccchhhhhhh-----hhhHHHHHhHHhHHHhcCcchHHHHHHH-Hhhhhh
Q 025094 85 LATEVFCCFANSVASTRFLLQDEFNIQTTACDNCIIGFMF-----CLSQLACIFSLVACIVGSDELQEASQIL-NLLADL 158 (258)
Q Consensus 85 Lc~Ev~cC~~~av~~tR~~iqd~~~lq~d~CDncii~~~~-----c~q~laCic~~~A~~~g~~~l~~~a~~l-dciAD~ 158 (258)
.|+.+.+|+..++..+...+.+.-.-....-..|.+.+.. ++ .|.++ .. ..-+.+||+-=+|- +.+-|+
T Consensus 14 ~c~~~~~cPc~~~~~~~~~l~~~~~~~~~~~~~C~~~~~~~~~~~~~-~l~~~--~~--~~~R~~iR~ry~I~g~~~~D~ 88 (106)
T PF04749_consen 14 SCCLACFCPCCSFGQNAERLGDGPRSRGPAFGSCCLCFCCFGCAACL-GLGWC--YG--CSLRQQIRERYGIQGSCCEDC 88 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccCCCCCccHHHHHHHHHHHHHH-HHhHh--hh--hhHHHHHHHHhCCCCCChhhh
Confidence 5556778888887777766665432222112233222111 11 11111 11 22223333322222 346777
Q ss_pred HH-HHhhhhhhhhhhhhh
Q 025094 159 VY-CTVCACMQTQHKVEM 175 (258)
Q Consensus 159 vy-c~v~~Cm~aQ~~~em 175 (258)
+- +....|.++|+++||
T Consensus 89 ~~~~~C~~Cal~Q~~rEl 106 (106)
T PF04749_consen 89 CCSCCCPPCALCQEAREL 106 (106)
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 44 445568999999986
No 11
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=53.24 E-value=68 Score=34.85 Aligned_cols=10 Identities=10% Similarity=0.052 Sum_probs=6.0
Q ss_pred CCCccchhhh
Q 025094 112 TTACDNCIIG 121 (258)
Q Consensus 112 ~d~CDncii~ 121 (258)
|.+-....|.
T Consensus 479 n~kv~~k~Ik 488 (894)
T KOG0132|consen 479 NVKVADKTIK 488 (894)
T ss_pred cccccceeeE
Confidence 6666666554
No 12
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=42.12 E-value=1.8e+02 Score=24.88 Aligned_cols=8 Identities=38% Similarity=1.422 Sum_probs=3.7
Q ss_pred Cccccccc
Q 025094 34 PYCCFSCI 41 (258)
Q Consensus 34 ~~Cc~s~~ 41 (258)
-|||.+|.
T Consensus 27 ~~CCG~C~ 34 (179)
T PF13908_consen 27 TFCCGTCS 34 (179)
T ss_pred ceecCCcc
Confidence 44555443
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=33.53 E-value=2.5e+02 Score=27.95 Aligned_cols=11 Identities=18% Similarity=0.326 Sum_probs=4.9
Q ss_pred cchHHHHHHHH
Q 025094 143 DELQEASQILN 153 (258)
Q Consensus 143 ~~l~~~a~~ld 153 (258)
.+.+++..+++
T Consensus 334 ~~~~~A~~A~~ 344 (562)
T TIGR01628 334 SNPEEANRAVT 344 (562)
T ss_pred CCHHHHHHHHH
Confidence 33444444444
No 14
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=29.71 E-value=1.8e+02 Score=25.61 Aligned_cols=11 Identities=27% Similarity=0.232 Sum_probs=6.0
Q ss_pred CCCCCCCCCCC
Q 025094 196 SRIDQPYPATV 206 (258)
Q Consensus 196 S~~~~p~~p~~ 206 (258)
|+|..++++.+
T Consensus 109 SyP~apPpysy 119 (155)
T PF10873_consen 109 SYPAAPPPYSY 119 (155)
T ss_pred ccCCCCCCccc
Confidence 56665555443
No 15
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.33 E-value=1.4e+02 Score=29.55 Aligned_cols=8 Identities=0% Similarity=0.119 Sum_probs=3.5
Q ss_pred HhCCCCCC
Q 025094 107 EFNIQTTA 114 (258)
Q Consensus 107 ~~~lq~d~ 114 (258)
+.++..+.
T Consensus 100 ~~hVd~nG 107 (365)
T KOG2391|consen 100 HEHVDPNG 107 (365)
T ss_pred hhccCCCC
Confidence 44444433
No 16
>PF04066 MrpF_PhaF: Multiple resistance and pH regulation protein F (MrpF / PhaF); InterPro: IPR007208 Members of the PhaF/MrpF family are predicted to be integral membrane proteins with three transmembrane regions, involved in regulation of pH. PhaF is part of a potassium efflux system involved in pH regulation. It is also involved in symbiosis in Rhizobium meliloti (Sinorhizobium meliloti) []. MrpF is a part of a Na+/H+ antiporter complex, also involved in pH homeostasis. MrpF is thought to be an efflux system for Na+ and cholate []. The Mrp system in Gram-positive species may also have primary energisation capacities [].; GO: 0015075 ion transmembrane transporter activity, 0034220 ion transmembrane transport, 0016021 integral to membrane
Probab=27.14 E-value=1.6e+02 Score=20.92 Aligned_cols=39 Identities=15% Similarity=0.319 Sum_probs=32.9
Q ss_pred chhhhhhhhhhHHHHHhHHhHHHhcCcchHHHHHHHHhh
Q 025094 117 NCIIGFMFCLSQLACIFSLVACIVGSDELQEASQILNLL 155 (258)
Q Consensus 117 ncii~~~~c~q~laCic~~~A~~~g~~~l~~~a~~ldci 155 (258)
||+++.+...-.+..+.-++++..|+..+-|+|-++.++
T Consensus 3 DRvva~d~~~~~~v~~l~l~a~~~~~~~~lDialv~all 41 (55)
T PF04066_consen 3 DRVVALDLISTLIVALLALLAIITGRPFYLDIALVYALL 41 (55)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHH
Confidence 678888888888888999999999999999988776554
No 17
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=25.60 E-value=2.1e+02 Score=30.97 Aligned_cols=9 Identities=33% Similarity=0.512 Sum_probs=3.8
Q ss_pred CCCCccccC
Q 025094 188 AVPPHQQMS 196 (258)
Q Consensus 188 ~~PP~qqMS 196 (258)
+.-|.|++-
T Consensus 560 ~~tp~q~~~ 568 (756)
T KOG2375|consen 560 AMTPFQNSQ 568 (756)
T ss_pred CCCCCcccc
Confidence 344444443
No 18
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=24.66 E-value=2.2e+02 Score=28.89 Aligned_cols=9 Identities=44% Similarity=0.682 Sum_probs=6.5
Q ss_pred HHHHHHHhh
Q 025094 48 YLLRKRALY 56 (258)
Q Consensus 48 y~~R~r~L~ 56 (258)
...|.||||
T Consensus 214 ~~rkVRALY 222 (462)
T KOG2199|consen 214 VVRKVRALY 222 (462)
T ss_pred cchhhhhhh
Confidence 446888886
No 19
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=23.96 E-value=4.4e+02 Score=24.61 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=17.1
Q ss_pred CcchHHHHHHHHhhhhh---HHHHhhhhh
Q 025094 142 SDELQEASQILNLLADL---VYCTVCACM 167 (258)
Q Consensus 142 ~~~l~~~a~~ldciAD~---vyc~v~~Cm 167 (258)
-|+-+.-+.|-+.|+.- +|.+|+..+
T Consensus 23 prD~eAe~lI~~~~~~qP~A~Y~laQ~vl 51 (247)
T PF09849_consen 23 PRDPEAEALIAQALARQPDAPYYLAQTVL 51 (247)
T ss_pred CCCHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 34555555666666643 899998876
No 20
>TIGR00859 ENaC sodium channel transporter. This model is designed from the vertebrate members of the ENaC family.
Probab=22.08 E-value=7.1e+02 Score=25.81 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=37.2
Q ss_pred hhhhhhHHHHHhHHhHHHhcCcchHHHHHHHHhhhhhHHHHhhhhhh
Q 025094 122 FMFCLSQLACIFSLVACIVGSDELQEASQILNLLADLVYCTVCACMQ 168 (258)
Q Consensus 122 ~~~c~q~laCic~~~A~~~g~~~l~~~a~~ldciAD~vyc~v~~Cm~ 168 (258)
.+...+.||=|=.+++++.|-.-| .+..+++.+.|+++..+..-..
T Consensus 488 ~y~~~~LLsdiGG~lGLfmG~SvL-Si~Eii~~l~~~~~~~~~~~~~ 533 (595)
T TIGR00859 488 AYNVVTLLSNLGGQMGLWMGASVL-CVLELLELIIDLIFITLLRLLW 533 (595)
T ss_pred ccCHHHHHHHHHhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999988776 5888999999998887665443
Done!