Query 025094
Match_columns 258
No_of_seqs 164 out of 202
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 03:37:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025094.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025094hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iot_A Maltose-binding protein 45.5 23 0.00079 32.0 4.8 10 137-146 349-358 (449)
2 3iot_A Maltose-binding protein 29.6 11 0.00039 34.1 0.0 9 150-158 338-346 (449)
3 1qf8_A Casein kinase II; casei 17.8 1.6E+02 0.0054 25.1 4.8 76 99-186 25-110 (182)
4 1kil_E Complexin I snare-compl 16.9 57 0.0019 22.6 1.5 11 100-110 39-49 (49)
5 3rk3_E Complexin-1; snare prot 15.1 69 0.0024 23.1 1.6 14 99-112 41-54 (63)
6 1l4a_E Synaphin A; snare, snar 13.8 77 0.0026 23.8 1.6 15 99-113 45-59 (79)
7 1wq6_A AML1-ETO; NHR2, oncopro 11.2 1.2E+02 0.004 22.5 1.9 18 143-160 21-38 (72)
8 1v4q_A Omega-conotoxin MVIIC; 11.0 1.3E+02 0.0044 18.0 1.7 18 59-76 10-27 (27)
9 4dgl_A Casein kinase II subuni 10.2 3.3E+02 0.011 23.8 4.8 69 103-183 29-107 (215)
10 2rfp_A Putative NTP pyrophosph 8.6 2E+02 0.0068 24.4 2.6 18 146-163 89-106 (171)
No 1
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=45.46 E-value=23 Score=32.00 Aligned_cols=10 Identities=10% Similarity=0.278 Sum_probs=4.9
Q ss_pred HHHhcCcchH
Q 025094 137 ACIVGSDELQ 146 (258)
Q Consensus 137 A~~~g~~~l~ 146 (258)
+++.|....+
T Consensus 349 ~~~~G~~~~e 358 (449)
T 3iot_A 349 NAASGRQTVD 358 (449)
T ss_dssp HHHHTSSCHH
T ss_pred HHHcCCCCHH
Confidence 4555554443
No 2
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=29.58 E-value=11 Score=34.11 Aligned_cols=9 Identities=0% Similarity=-0.090 Sum_probs=3.3
Q ss_pred HHHHhhhhh
Q 025094 150 QILNLLADL 158 (258)
Q Consensus 150 ~~ldciAD~ 158 (258)
.+.+.+.+.
T Consensus 338 ~~~~~~~~~ 346 (449)
T 3iot_A 338 AFWYAVRTA 346 (449)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 3
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=17.75 E-value=1.6e+02 Score=25.10 Aligned_cols=76 Identities=20% Similarity=0.306 Sum_probs=44.4
Q ss_pred hhHHHHHHHhCCCCCCccchhhhhhhhhhHHHHHhHHhHHHhcCcchHH------HHHHHHhhhhhHHHHhhh-hhhhh-
Q 025094 99 STRFLLQDEFNIQTTACDNCIIGFMFCLSQLACIFSLVACIVGSDELQE------ASQILNLLADLVYCTVCA-CMQTQ- 170 (258)
Q Consensus 99 ~tR~~iqd~~~lq~d~CDncii~~~~c~q~laCic~~~A~~~g~~~l~~------~a~~ldciAD~vyc~v~~-Cm~aQ- 170 (258)
.-.-+|+|+|||-+=.= -+-.+ =..|-+|.|.....+ ...+++--|..+|..+.+ -++|-
T Consensus 25 Vd~dyI~D~FNL~GL~~--~vp~y----------~~aLd~Ild~~~~~~~~~~~~~~~~ie~~a~~LYGLIHaRyIlT~~ 92 (182)
T 1qf8_A 25 VDEDYIQDKFNLTGLNE--QVPHY----------RQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHARYILTNR 92 (182)
T ss_dssp CCHHHHHSGGGGTTGGG--TSTTH----------HHHHHHHTTCCCC------CHHHHHHHHHHHHHHHHHHHHHTTSHH
T ss_pred eCHHHhcCcchhhCccc--cccCH----------HHHHHHHhCCCCccccccchhhhHHHHHHHHHHhchhhhhhcccHH
Confidence 45778999999866321 11111 144555554432221 134566778889999888 44444
Q ss_pred --hhhhhhcccCCCCCCC
Q 025094 171 --HKVEMDKRDGKFGPQP 186 (258)
Q Consensus 171 --~~~em~~rd~~~~~~~ 186 (258)
.+..-|++.|.||.=|
T Consensus 93 Gl~~M~eKy~~g~FG~CP 110 (182)
T 1qf8_A 93 GIAQMLEKYQQGDFGYCP 110 (182)
T ss_dssp HHHHHHHHHHTTTTCBCC
T ss_pred HHHHHHHhhhcCcCCCCC
Confidence 3444566888998743
No 4
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=16.93 E-value=57 Score=22.56 Aligned_cols=11 Identities=27% Similarity=0.510 Sum_probs=9.1
Q ss_pred hHHHHHHHhCC
Q 025094 100 TRFLLQDEFNI 110 (258)
Q Consensus 100 tR~~iqd~~~l 110 (258)
.|.-|+|+|||
T Consensus 39 mRq~IRdKY~i 49 (49)
T 1kil_E 39 MRQGIRDKYGI 49 (49)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHhcCC
Confidence 58889999987
No 5
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=15.10 E-value=69 Score=23.12 Aligned_cols=14 Identities=21% Similarity=0.480 Sum_probs=11.1
Q ss_pred hhHHHHHHHhCCCC
Q 025094 99 STRFLLQDEFNIQT 112 (258)
Q Consensus 99 ~tR~~iqd~~~lq~ 112 (258)
..|.-|+|+|||.-
T Consensus 41 ~mRQ~IRdKY~ikK 54 (63)
T 3rk3_E 41 AVRQGIRDKYGIKK 54 (63)
T ss_dssp HHHHHHHHHHTCC-
T ss_pred HHHHHHHHHhccch
Confidence 35889999999974
No 6
>1l4a_E Synaphin A; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=13.82 E-value=77 Score=23.82 Aligned_cols=15 Identities=13% Similarity=0.459 Sum_probs=11.3
Q ss_pred hhHHHHHHHhCCCCC
Q 025094 99 STRFLLQDEFNIQTT 113 (258)
Q Consensus 99 ~tR~~iqd~~~lq~d 113 (258)
..|.-|||+|||.--
T Consensus 45 ~mRq~IRdKY~ikKK 59 (79)
T 1l4a_E 45 EMRQTIRDKYGLKKK 59 (79)
T ss_dssp HHHHHHHHHHTCC--
T ss_pred HHHHHHHHHhccccc
Confidence 358999999999754
No 7
>1wq6_A AML1-ETO; NHR2, oncoprotein; 2.00A {Homo sapiens}
Probab=11.16 E-value=1.2e+02 Score=22.52 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=15.4
Q ss_pred cchHHHHHHHHhhhhhHH
Q 025094 143 DELQEASQILNLLADLVY 160 (258)
Q Consensus 143 ~~l~~~a~~ldciAD~vy 160 (258)
+|.+.+-++|+||.|+|=
T Consensus 21 eeWkhi~~mLnCI~~MVE 38 (72)
T 1wq6_A 21 EEWKHLDHLLNCIMDMVE 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 677888899999999985
No 8
>1v4q_A Omega-conotoxin MVIIC; cystine knot motif, triple-stranded antiparallel beta-sheet, calcium channel blocker; NMR {Synthetic}
Probab=10.95 E-value=1.3e+02 Score=17.98 Aligned_cols=18 Identities=33% Similarity=0.848 Sum_probs=9.7
Q ss_pred CCcccccCCCCccccccc
Q 025094 59 MSRYVCCAGYMPCSGKCG 76 (258)
Q Consensus 59 ms~Y~CC~G~~~C~g~Cg 76 (258)
+.-|.||.|+.-+.++||
T Consensus 10 ~~~~~CC~~~C~~~~~C~ 27 (27)
T 1v4q_A 10 KTMYDCCKGRCGRRGRCX 27 (27)
T ss_dssp TTSCCBTTSCCCTTSCC-
T ss_pred CcccccccCccccceeeC
Confidence 455788877721235554
No 9
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*
Probab=10.16 E-value=3.3e+02 Score=23.75 Aligned_cols=69 Identities=20% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHHHhCCCCCCccchhhhhhhhhhHHHHHhHHhHHHhcCcchHHH------HHHHHhhhhhHHHHhhhh-hhhh---hh
Q 025094 103 LLQDEFNIQTTACDNCIIGFMFCLSQLACIFSLVACIVGSDELQEA------SQILNLLADLVYCTVCAC-MQTQ---HK 172 (258)
Q Consensus 103 ~iqd~~~lq~d~CDncii~~~~c~q~laCic~~~A~~~g~~~l~~~------a~~ldciAD~vyc~v~~C-m~aQ---~~ 172 (258)
+|+|+|||-+=.-.-=-.. ..|-+|.|.+.-++. ..+++--|..+|..+.+- ++|- ++
T Consensus 29 yI~D~FNL~GL~~~Vp~y~------------~aLd~Ild~~~~~~~~~~~~~~~~ie~~A~~LYGLIHARYIlT~~Gl~~ 96 (215)
T 4dgl_A 29 YIQDKFNLTGLNEQVPHYR------------QALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQ 96 (215)
T ss_dssp HHHSTTTTTTGGGTSSSHH------------HHHHHHTTC--------CTTHHHHHHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HhcCcccccCchhccccHH------------HHHHHHcCCCCcchhcccchhHHHHHHHHHHHhhhhhHhheecHHHHHH
Q ss_pred hhhhcccCCCC
Q 025094 173 VEMDKRDGKFG 183 (258)
Q Consensus 173 ~em~~rd~~~~ 183 (258)
..-|++.|.||
T Consensus 97 M~eKY~~g~FG 107 (215)
T 4dgl_A 97 MLEKYQQGDFG 107 (215)
T ss_dssp HHHHHHTTTTC
T ss_pred HHHHHhcCCCC
No 10
>2rfp_A Putative NTP pyrophosphohydrolase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.74A {Exiguobacterium sibiricum} PDB: 3mqu_A 3nl9_A
Probab=8.57 E-value=2e+02 Score=24.41 Aligned_cols=18 Identities=17% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhHHHHh
Q 025094 146 QEASQILNLLADLVYCTV 163 (258)
Q Consensus 146 ~~~a~~ldciAD~vyc~v 163 (258)
++++.++|-|+|++|.+.
T Consensus 89 ~dlve~aDaL~Dl~Yv~~ 106 (171)
T 2rfp_A 89 ERLVGQGDALTDALYFIM 106 (171)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhCHHHHHH
Done!