Query 025094
Match_columns 258
No_of_seqs 164 out of 202
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 03:37:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025094.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025094hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ttka_ g.3.6.1 (A:) Conotoxin 19.7 18 0.0013 20.3 1.0 7 62-68 13-19 (26)
2 d2a7wa1 a.204.1.4 (A:4-94) Pho 8.9 1.5E+02 0.011 20.6 3.7 41 135-180 46-91 (91)
3 d1mvja_ g.3.6.1 (A:) Conotoxin 8.9 75 0.0055 17.5 1.5 9 60-68 11-19 (26)
4 d2cvba1 c.47.1.10 (A:2-188) Pr 7.9 60 0.0044 24.5 1.2 22 38-59 40-61 (187)
5 d1lu4a_ c.47.1.10 (A:) Soluble 7.9 80 0.0059 21.9 1.8 19 38-56 32-50 (134)
6 d1z5ye1 c.47.1.10 (E:49-184) T 7.6 93 0.0068 21.4 2.1 11 39-49 29-39 (136)
7 d1qf8a_ g.41.4.1 (A:) Casein k 7.5 2.6E+02 0.019 21.4 5.0 75 98-184 18-102 (173)
8 d1kf6b2 d.15.4.2 (B:1-105) Fum 7.3 87 0.0063 22.3 1.8 19 55-76 47-66 (105)
9 d1knga_ c.47.1.10 (A:) Thiored 7.2 1.2E+02 0.009 20.9 2.6 19 38-56 39-57 (144)
10 d2fy6a1 c.47.1.10 (A:33-175) P 7.1 77 0.0056 21.9 1.4 12 38-49 31-42 (143)
No 1
>d1ttka_ g.3.6.1 (A:) Conotoxin {Sea snail (Conus magus), M VIIa [TaxId: 6492]}
Probab=19.65 E-value=18 Score=20.28 Aligned_cols=7 Identities=57% Similarity=1.578 Sum_probs=5.4
Q ss_pred ccccCCC
Q 025094 62 YVCCAGY 68 (258)
Q Consensus 62 Y~CC~G~ 68 (258)
|-||-|+
T Consensus 13 ydcctgs 19 (26)
T d1ttka_ 13 YDCCTGS 19 (26)
T ss_dssp CCCTTSC
T ss_pred HHhccCc
Confidence 6788876
No 2
>d2a7wa1 a.204.1.4 (A:4-94) Phosphoribosyl-ATP pyrophosphatase HisE {Chromobacterium violaceum [TaxId: 536]}
Probab=8.92 E-value=1.5e+02 Score=20.57 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=23.8
Q ss_pred HhHHHhcCcchHHHHHHHHhhhhhHHHHhhhhhh-----hhhhhhhhcccC
Q 025094 135 LVACIVGSDELQEASQILNLLADLVYCTVCACMQ-----TQHKVEMDKRDG 180 (258)
Q Consensus 135 ~~A~~~g~~~l~~~a~~ldciAD~vyc~v~~Cm~-----aQ~~~em~~rd~ 180 (258)
++|+..++++ +++.=.||++|-+...--. .-...||++|.|
T Consensus 46 i~A~~~~~~~-----~vi~EaADLlyHllVlL~~~gi~~~dV~~eL~~R~G 91 (91)
T d2a7wa1 46 LMASKDKDKL-----HLVREVADLWFHTMVLLTYHGLRPEDVVMELHRREG 91 (91)
T ss_dssp HHHHHTTCHH-----HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHCC
T ss_pred HHHHHhCCHH-----HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhcCC
Confidence 4565655543 4555678888866554332 225566777754
No 3
>d1mvja_ g.3.6.1 (A:) Conotoxin {Conus striatus, S VIb [TaxId: 6493]}
Probab=8.87 E-value=75 Score=17.54 Aligned_cols=9 Identities=44% Similarity=1.294 Sum_probs=5.5
Q ss_pred CcccccCCC
Q 025094 60 SRYVCCAGY 68 (258)
Q Consensus 60 s~Y~CC~G~ 68 (258)
..|-||.|+
T Consensus 11 tsydccsgs 19 (26)
T d1mvja_ 11 TSYDCCSGS 19 (26)
T ss_dssp TTCCBSSCC
T ss_pred ccccccccc
Confidence 456676665
No 4
>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}
Probab=7.94 E-value=60 Score=24.49 Aligned_cols=22 Identities=14% Similarity=0.012 Sum_probs=16.0
Q ss_pred ccccchhHHHHHHHHHHhhcCC
Q 025094 38 FSCICGPCVSYLLRKRALYNDM 59 (258)
Q Consensus 38 ~s~~C~pC~~y~~R~r~L~~dm 59 (258)
.+.||++|..++-+-..|+.++
T Consensus 40 watwCp~C~~~~p~l~~l~~~y 61 (187)
T d2cvba1 40 MCNHCPYVKGSIGELVALAERY 61 (187)
T ss_dssp ECSSCHHHHTTHHHHHHHHHHT
T ss_pred eCCCCccchhhhhhhhhhhhhc
Confidence 4679999998886666665443
No 5
>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=7.86 E-value=80 Score=21.85 Aligned_cols=19 Identities=11% Similarity=0.132 Sum_probs=12.4
Q ss_pred ccccchhHHHHHHHHHHhh
Q 025094 38 FSCICGPCVSYLLRKRALY 56 (258)
Q Consensus 38 ~s~~C~pC~~y~~R~r~L~ 56 (258)
++.||++|...+-.-+.++
T Consensus 32 ~a~wC~~C~~~~p~l~~~~ 50 (134)
T d1lu4a_ 32 WTPWCPFCNAEAPSLSQVA 50 (134)
T ss_dssp ECTTCHHHHHHHHHHHHHH
T ss_pred eecccCCceecchhHHHHh
Confidence 3789999987663333343
No 6
>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}
Probab=7.62 E-value=93 Score=21.41 Aligned_cols=11 Identities=9% Similarity=0.105 Sum_probs=9.0
Q ss_pred cccchhHHHHH
Q 025094 39 SCICGPCVSYL 49 (258)
Q Consensus 39 s~~C~pC~~y~ 49 (258)
+.||++|..-+
T Consensus 29 atWC~pC~~e~ 39 (136)
T d1z5ye1 29 ATWCPTSRAEH 39 (136)
T ss_dssp CTTCHHHHHHH
T ss_pred cCcCCCcCccc
Confidence 67999997655
No 7
>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.52 E-value=2.6e+02 Score=21.44 Aligned_cols=75 Identities=20% Similarity=0.338 Sum_probs=42.9
Q ss_pred hhhHHHHHHHhCCCCCCccchhhhhhhhhhHHHHHhHHhHHHhcCc---chH---HHHHHHHhhhhhHHHHhhhh-hhhh
Q 025094 98 ASTRFLLQDEFNIQTTACDNCIIGFMFCLSQLACIFSLVACIVGSD---ELQ---EASQILNLLADLVYCTVCAC-MQTQ 170 (258)
Q Consensus 98 ~~tR~~iqd~~~lq~d~CDncii~~~~c~q~laCic~~~A~~~g~~---~l~---~~a~~ldciAD~vyc~v~~C-m~aQ 170 (258)
-.-.-+|+|+|||-+=. +-+-.| =..|-+|.|.. +++ +-..+++--|..+|..+.+= ++|-
T Consensus 18 ~Vd~dyI~D~FNl~GL~--~~v~~y----------~~al~~Ild~~~~~~~~~~~~~~~~i~~~a~~LYGLIHaRyI~T~ 85 (173)
T d1qf8a_ 18 EVDEDYIQDKFNLTGLN--EQVPHY----------RQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHARYILTN 85 (173)
T ss_dssp CCCHHHHHSGGGGTTGG--GTSTTH----------HHHHHHHTTCCCC------CHHHHHHHHHHHHHHHHHHHHHTTSH
T ss_pred EeCHHHHcCcchhcCch--hccccH----------HHHHHHHhccCCChhhhhhhhhhHHHHHHHHHHHHHhhhheeecH
Confidence 34578999999986533 111122 24455555432 222 22344666788899998885 2322
Q ss_pred ---hhhhhhcccCCCCC
Q 025094 171 ---HKVEMDKRDGKFGP 184 (258)
Q Consensus 171 ---~~~em~~rd~~~~~ 184 (258)
++..-|++.|.||.
T Consensus 86 ~Gl~~m~eKy~~g~FG~ 102 (173)
T d1qf8a_ 86 RGIAQMLEKYQQGDFGY 102 (173)
T ss_dssp HHHHHHHHHHHTTTTCB
T ss_pred hHHHHHHHHHhCCCCCC
Confidence 34445778899985
No 8
>d1kf6b2 d.15.4.2 (B:1-105) Fumarate reductase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.33 E-value=87 Score=22.32 Aligned_cols=19 Identities=47% Similarity=1.106 Sum_probs=13.4
Q ss_pred hhcCCC-cccccCCCCccccccc
Q 025094 55 LYNDMS-RYVCCAGYMPCSGKCG 76 (258)
Q Consensus 55 L~~dms-~Y~CC~G~~~C~g~Cg 76 (258)
+.++++ ||.|-.|. | |.|+
T Consensus 47 ~d~sLsfr~sCr~gi--C-GsCa 66 (105)
T d1kf6b2 47 LAPDLSYRWSCRMAI--C-GSCG 66 (105)
T ss_dssp TCTTCCCCCCCSSSS--S-CCCE
T ss_pred cCCcceEEeccCCCC--C-CCCe
Confidence 345676 99999996 3 5663
No 9
>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}
Probab=7.16 E-value=1.2e+02 Score=20.93 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=12.5
Q ss_pred ccccchhHHHHHHHHHHhh
Q 025094 38 FSCICGPCVSYLLRKRALY 56 (258)
Q Consensus 38 ~s~~C~pC~~y~~R~r~L~ 56 (258)
.+.||++|...+-.-+.|+
T Consensus 39 wa~wC~~C~~~~p~l~~l~ 57 (144)
T d1knga_ 39 WASWCVPCHDEAPLLTELG 57 (144)
T ss_dssp ECTTCHHHHHHHHHHHHHT
T ss_pred eccccccccccCchhhhhh
Confidence 4789999976664333444
No 10
>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}
Probab=7.15 E-value=77 Score=21.91 Aligned_cols=12 Identities=33% Similarity=0.761 Sum_probs=9.2
Q ss_pred ccccchhHHHHH
Q 025094 38 FSCICGPCVSYL 49 (258)
Q Consensus 38 ~s~~C~pC~~y~ 49 (258)
++.||++|...+
T Consensus 31 ~a~wC~~C~~~~ 42 (143)
T d2fy6a1 31 WASWCPLCLSEL 42 (143)
T ss_dssp ECTTCHHHHTTH
T ss_pred ECCCCccccccC
Confidence 378999998654
Done!