Query 025095
Match_columns 258
No_of_seqs 229 out of 1345
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 02:38:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025095.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025095hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11573 hypothetical protein; 100.0 2.7E-53 5.8E-58 395.4 26.7 224 23-257 2-239 (413)
2 TIGR03520 GldE gliding motilit 100.0 8.5E-53 1.8E-57 391.8 28.4 227 20-257 2-243 (408)
3 COG4536 CorB Putative Mg2+ and 100.0 3.8E-54 8.3E-59 382.6 16.9 237 12-257 2-252 (423)
4 COG1253 TlyC Hemolysins and re 100.0 1.3E-48 2.8E-53 366.2 26.9 237 11-257 2-258 (429)
5 PF01595 DUF21: Domain of unkn 100.0 1.7E-30 3.6E-35 216.7 20.6 169 15-191 2-183 (183)
6 KOG2118 Predicted membrane pro 100.0 1.5E-29 3.2E-34 239.7 2.7 251 3-255 3-255 (498)
7 PRK15094 magnesium/cobalt effl 99.8 4.4E-20 9.4E-25 165.2 10.0 96 154-257 24-119 (292)
8 COG4535 CorC Putative Mg2+ and 99.8 2.3E-19 4.9E-24 151.8 4.2 100 150-257 20-119 (293)
9 TIGR01302 IMP_dehydrog inosine 98.6 1.5E-07 3.2E-12 89.3 8.5 83 163-257 43-132 (450)
10 TIGR00400 mgtE Mg2+ transporte 98.5 3.9E-07 8.5E-12 86.5 8.0 87 164-257 89-185 (449)
11 PF00571 CBS: CBS domain CBS d 98.4 5.7E-07 1.2E-11 60.1 4.7 47 206-256 1-47 (57)
12 PRK05567 inosine 5'-monophosph 97.8 6.7E-05 1.5E-09 72.0 8.4 81 163-256 50-135 (486)
13 COG4109 Predicted transcriptio 97.8 2.6E-05 5.5E-10 70.5 4.7 65 191-257 170-239 (432)
14 cd04604 CBS_pair_KpsF_GutQ_ass 97.4 0.0004 8.7E-09 51.9 5.5 59 195-257 50-108 (114)
15 cd04603 CBS_pair_KefB_assoc Th 97.3 0.00051 1.1E-08 51.7 5.0 50 203-256 55-104 (111)
16 cd04801 CBS_pair_M50_like This 97.2 0.00063 1.4E-08 51.1 5.1 52 203-256 56-107 (114)
17 cd04597 CBS_pair_DRTGG_assoc2 97.2 0.00086 1.9E-08 51.1 5.5 49 204-256 58-106 (113)
18 COG3448 CBS-domain-containing 97.2 0.0093 2E-07 53.2 12.4 85 164-256 202-293 (382)
19 cd04617 CBS_pair_4 The CBS dom 97.2 0.00083 1.8E-08 51.0 5.3 55 201-256 55-111 (118)
20 cd04623 CBS_pair_10 The CBS do 97.2 0.00079 1.7E-08 50.1 5.0 49 203-256 58-106 (113)
21 cd04640 CBS_pair_27 The CBS do 97.0 0.00069 1.5E-08 52.1 3.8 54 202-256 62-119 (126)
22 cd04585 CBS_pair_ACT_assoc2 Th 97.0 0.001 2.3E-08 50.0 4.6 52 201-256 64-115 (122)
23 cd04619 CBS_pair_6 The CBS dom 97.0 0.0014 3E-08 49.5 4.9 51 202-256 57-107 (114)
24 cd04610 CBS_pair_ParBc_assoc T 96.9 0.0019 4.1E-08 47.6 4.9 50 203-256 51-100 (107)
25 PRK07107 inosine 5-monophospha 96.8 0.0018 3.8E-08 62.4 5.4 54 201-256 158-211 (502)
26 cd04584 CBS_pair_ACT_assoc Thi 96.8 0.0019 4.2E-08 48.7 4.6 52 200-256 63-114 (121)
27 cd04623 CBS_pair_10 The CBS do 96.8 0.0025 5.4E-08 47.3 5.1 41 215-257 2-42 (113)
28 cd04625 CBS_pair_12 The CBS do 96.8 0.0035 7.6E-08 46.7 5.9 50 202-256 56-105 (112)
29 cd04621 CBS_pair_8 The CBS dom 96.8 0.0023 4.9E-08 50.3 4.9 50 202-256 79-128 (135)
30 cd04582 CBS_pair_ABC_OpuCA_ass 96.8 0.0035 7.6E-08 46.2 5.6 49 204-256 51-99 (106)
31 cd04630 CBS_pair_17 The CBS do 96.7 0.0028 6.1E-08 47.6 5.0 50 202-256 58-107 (114)
32 cd04607 CBS_pair_NTP_transfera 96.7 0.0029 6.4E-08 47.3 5.1 50 203-256 57-106 (113)
33 cd04613 CBS_pair_SpoIVFB_EriC_ 96.7 0.0039 8.5E-08 46.3 5.4 51 203-256 57-107 (114)
34 cd04601 CBS_pair_IMPDH This cd 96.7 0.0038 8.3E-08 46.1 5.2 50 203-256 53-103 (110)
35 cd04589 CBS_pair_CAP-ED_DUF294 96.7 0.0033 7.2E-08 46.8 4.8 50 202-256 55-104 (111)
36 cd04636 CBS_pair_23 The CBS do 96.7 0.003 6.6E-08 48.8 4.7 50 202-256 76-125 (132)
37 cd04802 CBS_pair_3 The CBS dom 96.7 0.0038 8.1E-08 46.5 5.1 51 202-257 56-106 (112)
38 cd04587 CBS_pair_CAP-ED_DUF294 96.6 0.0035 7.6E-08 46.7 4.8 51 203-257 57-107 (113)
39 cd04622 CBS_pair_9 The CBS dom 96.6 0.0038 8.3E-08 46.5 5.0 51 202-256 56-106 (113)
40 cd04633 CBS_pair_20 The CBS do 96.6 0.0027 5.9E-08 48.0 4.1 51 201-256 64-114 (121)
41 PRK10892 D-arabinose 5-phospha 96.6 0.0032 7E-08 57.1 5.0 52 200-256 265-316 (326)
42 cd04599 CBS_pair_GGDEF_assoc2 96.5 0.0043 9.4E-08 45.5 4.7 50 202-256 49-98 (105)
43 PLN02274 inosine-5'-monophosph 96.5 0.0035 7.6E-08 60.5 5.3 53 202-256 161-213 (505)
44 COG0517 FOG: CBS domain [Gener 96.5 0.009 1.9E-07 44.6 6.6 50 205-257 63-113 (117)
45 cd04638 CBS_pair_25 The CBS do 96.5 0.0053 1.2E-07 45.3 5.2 40 215-256 2-41 (106)
46 cd04618 CBS_pair_5 The CBS dom 96.5 0.0064 1.4E-07 45.0 5.6 42 214-256 1-42 (98)
47 smart00116 CBS Domain in cysta 96.5 0.0049 1.1E-07 37.9 4.2 39 216-256 2-40 (49)
48 cd04615 CBS_pair_2 The CBS dom 96.5 0.005 1.1E-07 45.9 4.9 53 201-257 55-107 (113)
49 cd04626 CBS_pair_13 The CBS do 96.5 0.0051 1.1E-07 45.8 4.8 50 203-257 56-105 (111)
50 TIGR01137 cysta_beta cystathio 96.5 0.0038 8.3E-08 59.1 5.0 56 195-256 328-383 (454)
51 TIGR00393 kpsF KpsF/GutQ famil 96.5 0.004 8.6E-08 54.7 4.7 51 202-256 218-268 (268)
52 cd04803 CBS_pair_15 The CBS do 96.4 0.0065 1.4E-07 45.9 5.1 52 201-256 64-115 (122)
53 cd04594 CBS_pair_EriC_assoc_ar 96.4 0.0073 1.6E-07 44.6 5.2 48 204-256 50-97 (104)
54 COG3620 Predicted transcriptio 96.4 0.0025 5.4E-08 51.8 2.7 68 183-255 39-111 (187)
55 cd04641 CBS_pair_28 The CBS do 96.4 0.0067 1.5E-07 46.0 5.0 40 215-256 2-41 (120)
56 cd04639 CBS_pair_26 The CBS do 96.4 0.0062 1.3E-07 45.2 4.6 50 203-256 55-104 (111)
57 cd04631 CBS_pair_18 The CBS do 96.4 0.0058 1.2E-07 46.4 4.5 51 202-256 68-118 (125)
58 cd04618 CBS_pair_5 The CBS dom 96.4 0.0076 1.6E-07 44.6 5.1 40 216-256 52-91 (98)
59 cd04627 CBS_pair_14 The CBS do 96.3 0.0081 1.7E-07 45.8 5.3 46 207-256 71-116 (123)
60 PTZ00314 inosine-5'-monophosph 96.3 0.0058 1.3E-07 58.8 5.1 53 202-256 157-209 (495)
61 PRK10892 D-arabinose 5-phospha 96.3 0.0058 1.3E-07 55.4 4.8 53 202-256 200-252 (326)
62 cd04593 CBS_pair_EriC_assoc_ba 96.3 0.0086 1.9E-07 44.9 5.0 50 204-256 58-108 (115)
63 cd04596 CBS_pair_DRTGG_assoc T 96.2 0.0086 1.9E-07 44.4 4.7 51 202-256 51-101 (108)
64 cd04620 CBS_pair_7 The CBS dom 96.2 0.01 2.2E-07 44.4 5.2 51 202-256 56-108 (115)
65 cd04586 CBS_pair_BON_assoc Thi 96.2 0.0064 1.4E-07 47.2 4.1 51 201-256 78-128 (135)
66 cd04629 CBS_pair_16 The CBS do 96.2 0.0075 1.6E-07 44.9 4.2 49 203-256 59-107 (114)
67 cd04635 CBS_pair_22 The CBS do 96.1 0.0099 2.2E-07 44.9 4.7 51 202-256 65-115 (122)
68 cd04800 CBS_pair_CAP-ED_DUF294 96.1 0.01 2.2E-07 44.1 4.7 49 203-256 56-104 (111)
69 cd04634 CBS_pair_21 The CBS do 96.1 0.0099 2.1E-07 46.9 4.6 51 202-257 87-137 (143)
70 cd04611 CBS_pair_PAS_GGDEF_DUF 96.1 0.013 2.9E-07 43.2 5.1 51 202-256 54-104 (111)
71 cd04606 CBS_pair_Mg_transporte 96.0 0.013 2.8E-07 43.5 5.0 50 203-256 52-101 (109)
72 PRK11543 gutQ D-arabinose 5-ph 96.0 0.0066 1.4E-07 54.8 3.8 52 203-256 196-247 (321)
73 cd04602 CBS_pair_IMPDH_2 This 96.0 0.013 2.7E-07 44.0 4.8 52 203-256 56-107 (114)
74 cd04595 CBS_pair_DHH_polyA_Pol 95.9 0.015 3.2E-07 43.1 4.9 50 202-256 54-103 (110)
75 cd04600 CBS_pair_HPP_assoc Thi 95.9 0.014 3E-07 44.2 4.7 52 201-256 66-117 (124)
76 cd04583 CBS_pair_ABC_OpuCA_ass 95.9 0.017 3.6E-07 42.6 4.9 49 204-256 54-102 (109)
77 cd04605 CBS_pair_MET2_assoc Th 95.9 0.017 3.8E-07 42.7 5.0 41 214-256 2-42 (110)
78 cd04600 CBS_pair_HPP_assoc Thi 95.8 0.018 3.9E-07 43.5 5.0 40 215-256 3-42 (124)
79 PRK11543 gutQ D-arabinose 5-ph 95.8 0.023 5E-07 51.3 6.3 51 202-256 261-311 (321)
80 PRK14869 putative manganese-de 95.7 0.014 3.1E-07 56.8 5.1 52 202-256 244-295 (546)
81 cd04642 CBS_pair_29 The CBS do 95.7 0.021 4.6E-07 43.6 5.1 42 213-256 78-119 (126)
82 cd04641 CBS_pair_28 The CBS do 95.7 0.023 5E-07 43.0 5.3 40 215-256 74-113 (120)
83 cd04637 CBS_pair_24 The CBS do 95.7 0.02 4.4E-07 43.2 5.0 40 214-256 1-40 (122)
84 cd04631 CBS_pair_18 The CBS do 95.7 0.017 3.7E-07 43.7 4.5 41 215-256 2-42 (125)
85 cd04627 CBS_pair_14 The CBS do 95.7 0.02 4.2E-07 43.6 4.8 41 215-256 2-42 (123)
86 cd04613 CBS_pair_SpoIVFB_EriC_ 95.7 0.018 4E-07 42.6 4.5 41 215-257 2-42 (114)
87 COG2524 Predicted transcriptio 95.7 0.0082 1.8E-07 52.4 2.9 57 195-256 163-219 (294)
88 cd04637 CBS_pair_24 The CBS do 95.7 0.017 3.8E-07 43.6 4.3 50 203-256 66-115 (122)
89 cd04642 CBS_pair_29 The CBS do 95.7 0.019 4.2E-07 43.9 4.6 41 214-256 1-41 (126)
90 cd04630 CBS_pair_17 The CBS do 95.7 0.028 6E-07 42.0 5.4 42 215-257 2-43 (114)
91 cd04803 CBS_pair_15 The CBS do 95.6 0.019 4.1E-07 43.3 4.5 40 215-256 2-41 (122)
92 cd04596 CBS_pair_DRTGG_assoc T 95.6 0.021 4.5E-07 42.3 4.6 41 214-256 2-42 (108)
93 cd04643 CBS_pair_30 The CBS do 95.6 0.023 4.9E-07 42.4 4.9 40 215-256 2-41 (116)
94 cd04626 CBS_pair_13 The CBS do 95.6 0.023 5E-07 42.1 4.9 40 215-256 2-41 (111)
95 PRK01862 putative voltage-gate 95.6 0.013 2.8E-07 57.5 4.1 52 201-256 444-495 (574)
96 cd04632 CBS_pair_19 The CBS do 95.6 0.02 4.4E-07 43.8 4.4 53 201-256 68-121 (128)
97 cd04590 CBS_pair_CorC_HlyC_ass 95.6 0.031 6.7E-07 41.4 5.3 42 214-256 1-42 (111)
98 cd04624 CBS_pair_11 The CBS do 95.5 0.028 6E-07 41.7 5.0 40 215-256 2-41 (112)
99 cd04800 CBS_pair_CAP-ED_DUF294 95.5 0.028 6E-07 41.6 5.0 40 215-257 2-41 (111)
100 cd04591 CBS_pair_EriC_assoc_eu 95.5 0.023 5E-07 42.3 4.5 43 213-256 1-45 (105)
101 PRK01862 putative voltage-gate 95.5 0.025 5.4E-07 55.4 5.9 52 202-256 510-562 (574)
102 cd04639 CBS_pair_26 The CBS do 95.4 0.025 5.4E-07 41.9 4.3 40 215-256 2-41 (111)
103 cd04614 CBS_pair_1 The CBS dom 95.4 0.033 7.2E-07 40.8 4.9 39 216-256 51-89 (96)
104 cd04605 CBS_pair_MET2_assoc Th 95.4 0.04 8.7E-07 40.7 5.4 49 204-256 55-103 (110)
105 cd04584 CBS_pair_ACT_assoc Thi 95.4 0.027 5.9E-07 42.3 4.5 40 215-256 2-41 (121)
106 cd02205 CBS_pair The CBS domai 95.4 0.036 7.9E-07 40.2 5.0 40 215-256 2-41 (113)
107 cd04592 CBS_pair_EriC_assoc_eu 95.4 0.015 3.2E-07 45.8 3.0 50 199-249 64-120 (133)
108 TIGR00400 mgtE Mg2+ transporte 95.3 0.022 4.8E-07 54.2 4.7 51 202-256 193-243 (449)
109 cd04590 CBS_pair_CorC_HlyC_ass 95.3 0.03 6.5E-07 41.4 4.5 48 204-256 57-104 (111)
110 PRK14869 putative manganese-de 95.3 0.021 4.6E-07 55.5 4.6 50 203-256 67-116 (546)
111 cd04624 CBS_pair_11 The CBS do 95.3 0.036 7.8E-07 41.1 4.9 50 203-256 56-105 (112)
112 cd04632 CBS_pair_19 The CBS do 95.3 0.038 8.2E-07 42.2 5.1 40 215-256 2-41 (128)
113 cd04611 CBS_pair_PAS_GGDEF_DUF 95.2 0.038 8.2E-07 40.7 4.9 41 214-257 1-41 (111)
114 cd04643 CBS_pair_30 The CBS do 95.2 0.025 5.5E-07 42.1 3.9 49 202-256 61-109 (116)
115 cd04609 CBS_pair_PALP_assoc2 T 95.2 0.037 8E-07 40.6 4.7 39 215-256 2-40 (110)
116 cd04601 CBS_pair_IMPDH This cd 95.1 0.043 9.4E-07 40.3 4.9 40 215-256 3-42 (110)
117 cd04585 CBS_pair_ACT_assoc2 Th 95.1 0.038 8.2E-07 41.3 4.6 39 215-256 2-40 (122)
118 PRK07807 inosine 5-monophospha 95.1 0.032 6.9E-07 53.6 5.0 50 203-256 147-196 (479)
119 cd04594 CBS_pair_EriC_assoc_ar 95.1 0.047 1E-06 40.2 5.0 36 218-256 5-40 (104)
120 cd04595 CBS_pair_DHH_polyA_Pol 95.1 0.045 9.7E-07 40.5 4.8 39 215-256 3-41 (110)
121 cd04622 CBS_pair_9 The CBS dom 95.1 0.045 9.8E-07 40.5 4.9 39 215-256 2-40 (113)
122 cd04588 CBS_pair_CAP-ED_DUF294 95.1 0.046 9.9E-07 40.4 4.8 49 204-256 55-103 (110)
123 cd04612 CBS_pair_SpoIVFB_EriC_ 95.1 0.04 8.7E-07 40.6 4.5 39 215-256 2-40 (111)
124 TIGR01303 IMP_DH_rel_1 IMP deh 95.0 0.034 7.4E-07 53.3 4.9 50 203-256 145-194 (475)
125 cd04588 CBS_pair_CAP-ED_DUF294 95.0 0.052 1.1E-06 40.0 4.9 40 215-257 2-41 (110)
126 cd04583 CBS_pair_ABC_OpuCA_ass 94.9 0.056 1.2E-06 39.6 5.0 41 214-256 2-42 (109)
127 cd04599 CBS_pair_GGDEF_assoc2 94.9 0.057 1.2E-06 39.4 4.9 40 215-257 2-41 (105)
128 cd04614 CBS_pair_1 The CBS dom 94.9 0.059 1.3E-06 39.4 4.9 40 215-256 2-41 (96)
129 cd04633 CBS_pair_20 The CBS do 94.8 0.053 1.2E-06 40.7 4.7 40 215-257 2-41 (121)
130 cd04635 CBS_pair_22 The CBS do 94.8 0.052 1.1E-06 40.8 4.5 40 215-256 2-41 (122)
131 cd04610 CBS_pair_ParBc_assoc T 94.7 0.065 1.4E-06 39.2 4.9 40 214-256 2-41 (107)
132 cd04604 CBS_pair_KpsF_GutQ_ass 94.7 0.043 9.4E-07 40.6 4.0 41 214-256 2-42 (114)
133 cd04802 CBS_pair_3 The CBS dom 94.7 0.07 1.5E-06 39.5 5.1 39 215-256 2-40 (112)
134 cd04582 CBS_pair_ABC_OpuCA_ass 94.7 0.068 1.5E-06 39.1 4.9 40 215-256 2-41 (106)
135 cd04589 CBS_pair_CAP-ED_DUF294 94.7 0.068 1.5E-06 39.5 4.9 39 215-256 2-40 (111)
136 cd04612 CBS_pair_SpoIVFB_EriC_ 94.5 0.072 1.6E-06 39.2 4.8 49 204-256 56-104 (111)
137 TIGR00393 kpsF KpsF/GutQ famil 94.5 0.041 8.8E-07 48.2 3.9 50 204-256 155-204 (268)
138 cd04638 CBS_pair_25 The CBS do 94.5 0.071 1.5E-06 39.1 4.7 49 203-256 51-99 (106)
139 TIGR01302 IMP_dehydrog inosine 94.4 0.063 1.4E-06 51.2 5.0 52 202-256 141-192 (450)
140 cd04593 CBS_pair_EriC_assoc_ba 94.3 0.089 1.9E-06 39.2 4.9 39 216-256 3-41 (115)
141 cd02205 CBS_pair The CBS domai 94.2 0.15 3.2E-06 36.9 5.7 47 206-256 60-106 (113)
142 cd04587 CBS_pair_CAP-ED_DUF294 94.1 0.11 2.3E-06 38.5 4.9 40 214-256 1-40 (113)
143 cd04591 CBS_pair_EriC_assoc_eu 94.0 0.11 2.4E-06 38.5 4.9 43 209-256 56-98 (105)
144 COG2905 Predicted signal-trans 94.0 0.082 1.8E-06 51.0 4.9 63 190-257 197-262 (610)
145 cd04608 CBS_pair_PALP_assoc Th 94.0 0.12 2.7E-06 39.6 5.2 41 214-256 2-42 (124)
146 cd04598 CBS_pair_GGDEF_assoc T 93.8 0.1 2.2E-06 39.0 4.3 51 202-256 59-112 (119)
147 cd04801 CBS_pair_M50_like This 93.8 0.11 2.4E-06 38.6 4.5 40 215-256 2-42 (114)
148 cd04629 CBS_pair_16 The CBS do 93.7 0.096 2.1E-06 38.8 4.0 40 215-256 2-41 (114)
149 cd04603 CBS_pair_KefB_assoc Th 93.7 0.17 3.7E-06 37.6 5.3 40 215-256 2-41 (111)
150 PTZ00314 inosine-5'-monophosph 93.7 0.16 3.5E-06 49.0 6.4 81 164-256 60-147 (495)
151 cd04619 CBS_pair_6 The CBS dom 93.7 0.17 3.7E-06 37.8 5.3 40 215-256 2-41 (114)
152 PRK05567 inosine 5'-monophosph 93.2 0.14 3.1E-06 49.3 5.2 51 203-256 146-196 (486)
153 cd04602 CBS_pair_IMPDH_2 This 93.2 0.17 3.7E-06 37.7 4.7 42 214-256 2-45 (114)
154 COG3448 CBS-domain-containing 93.1 0.18 4E-06 45.1 5.2 53 200-256 311-363 (382)
155 PLN02274 inosine-5'-monophosph 93.1 0.26 5.5E-06 47.7 6.7 82 164-256 64-151 (505)
156 cd04615 CBS_pair_2 The CBS dom 92.8 0.25 5.4E-06 36.5 5.0 39 216-256 3-41 (113)
157 COG2524 Predicted transcriptio 92.8 0.15 3.3E-06 44.7 4.2 50 203-256 233-282 (294)
158 cd04609 CBS_pair_PALP_assoc2 T 92.7 0.17 3.6E-06 37.0 3.9 48 203-256 56-103 (110)
159 cd04640 CBS_pair_27 The CBS do 92.7 0.24 5.3E-06 37.7 5.0 40 215-256 2-41 (126)
160 cd04598 CBS_pair_GGDEF_assoc T 92.7 0.18 3.9E-06 37.7 4.1 39 215-256 2-41 (119)
161 COG2239 MgtE Mg/Co/Ni transpor 92.0 0.72 1.6E-05 44.0 8.0 68 186-256 114-185 (451)
162 PRK07807 inosine 5-monophospha 91.6 0.27 5.9E-06 47.2 4.9 50 203-256 88-137 (479)
163 cd04620 CBS_pair_7 The CBS dom 91.6 0.35 7.6E-06 35.8 4.6 39 215-256 2-41 (115)
164 cd04607 CBS_pair_NTP_transfera 91.1 0.52 1.1E-05 34.8 5.1 40 216-257 4-43 (113)
165 cd04617 CBS_pair_4 The CBS dom 90.5 0.64 1.4E-05 34.8 5.1 40 215-256 2-41 (118)
166 PRK07107 inosine 5-monophospha 90.4 0.34 7.4E-06 46.8 4.3 60 189-256 87-148 (502)
167 cd04606 CBS_pair_Mg_transporte 89.7 0.47 1E-05 34.9 3.8 36 219-256 2-42 (109)
168 cd04608 CBS_pair_PALP_assoc Th 89.3 0.2 4.3E-06 38.4 1.4 51 202-256 57-116 (124)
169 cd04625 CBS_pair_12 The CBS do 89.0 0.96 2.1E-05 33.2 5.0 39 215-256 2-40 (112)
170 COG0517 FOG: CBS domain [Gener 88.6 1.1 2.4E-05 33.0 5.1 44 208-256 3-46 (117)
171 KOG2550 IMP dehydrogenase/GMP 88.3 0.46 1E-05 44.4 3.2 52 200-255 167-218 (503)
172 PRK15094 magnesium/cobalt effl 88.1 0.66 1.4E-05 41.7 4.2 48 204-256 133-180 (292)
173 COG2239 MgtE Mg/Co/Ni transpor 88.1 0.48 1E-05 45.2 3.4 54 200-257 192-245 (451)
174 TIGR01303 IMP_DH_rel_1 IMP deh 85.6 1.2 2.5E-05 42.9 4.6 49 203-256 87-135 (475)
175 KOG0474 Cl- channel CLC-7 and 85.1 0.45 9.7E-06 46.7 1.5 47 201-250 579-625 (762)
176 TIGR03520 GldE gliding motilit 83.3 2.4 5.2E-05 39.9 5.5 49 203-256 254-302 (408)
177 cd04636 CBS_pair_23 The CBS do 82.7 1.2 2.5E-05 34.1 2.7 32 215-247 2-33 (132)
178 TIGR01186 proV glycine betaine 81.6 2.3 5E-05 39.4 4.6 49 203-256 301-349 (363)
179 cd04586 CBS_pair_BON_assoc Thi 79.8 1.9 4.1E-05 33.0 3.0 32 215-247 3-34 (135)
180 PF14044 NETI: NETI protein 79.7 2 4.3E-05 28.7 2.6 33 217-250 2-39 (57)
181 TIGR01137 cysta_beta cystathio 69.3 6.2 0.00014 37.3 4.2 47 203-256 399-445 (454)
182 KOG0475 Cl- channel CLC-3 and 68.5 5.1 0.00011 39.5 3.3 53 203-256 542-599 (696)
183 PRK10070 glycine betaine trans 66.3 9.3 0.0002 35.9 4.6 49 203-256 336-384 (400)
184 PHA00728 hypothetical protein 64.5 5.1 0.00011 31.1 2.0 55 187-246 34-88 (151)
185 KOG1764 5'-AMP-activated prote 60.4 16 0.00035 34.1 5.0 44 211-256 307-350 (381)
186 COG3620 Predicted transcriptio 53.1 22 0.00049 29.2 4.0 51 199-256 125-175 (187)
187 TIGR03415 ABC_choXWV_ATP choli 52.4 17 0.00036 34.0 3.7 47 203-256 325-371 (382)
188 PF03563 Bunya_G2: Bunyavirus 48.1 82 0.0018 28.0 6.9 39 105-157 196-234 (285)
189 PF11131 PhrC_PhrF: Rap-phr ex 42.4 23 0.0005 21.4 1.9 17 19-35 6-22 (37)
190 COG4109 Predicted transcriptio 39.3 49 0.0011 30.8 4.4 52 201-256 246-297 (432)
191 PRK09334 30S ribosomal protein 36.4 27 0.00058 25.5 1.9 58 187-244 10-83 (86)
192 cd07178 terB_like_YebE telluri 36.1 41 0.00088 24.8 2.9 15 185-199 14-28 (95)
193 PRK10329 glutaredoxin-like pro 34.7 58 0.0013 23.0 3.4 36 217-254 29-64 (81)
194 PF15284 PAGK: Phage-encoded v 33.1 59 0.0013 22.1 2.9 23 16-38 7-29 (61)
195 KOG1764 5'-AMP-activated prote 31.2 50 0.0011 30.9 3.3 51 203-255 225-276 (381)
196 TIGR03063 srtB_target sortase 30.8 64 0.0014 18.6 2.4 23 7-29 1-23 (29)
197 PF11305 DUF3107: Protein of u 30.4 55 0.0012 23.2 2.6 47 164-224 19-65 (74)
198 PF07172 GRP: Glycine rich pro 30.1 73 0.0016 23.6 3.4 12 24-35 13-24 (95)
199 CHL00038 psbL photosystem II p 27.5 95 0.0021 18.9 2.9 18 12-29 19-36 (38)
200 PF02419 PsbL: PsbL protein; 26.6 1.1E+02 0.0025 18.5 3.1 18 12-29 18-35 (37)
201 PF14163 SieB: Superinfection 26.2 3.3E+02 0.0071 21.5 7.5 28 186-224 78-105 (151)
202 KOG0476 Cl- channel CLC-2 and 25.9 69 0.0015 32.8 3.3 49 202-254 586-636 (931)
203 PRK03972 ribosomal biogenesis 25.8 1.1E+02 0.0023 26.3 4.0 34 222-256 35-68 (208)
204 PF04391 DUF533: Protein of un 25.7 72 0.0016 26.8 3.0 27 170-200 83-109 (188)
205 PRK10070 glycine betaine trans 25.6 1.7E+02 0.0036 27.5 5.7 51 204-256 274-325 (400)
206 KOG3773 Adiponutrin and relate 25.4 4E+02 0.0087 24.6 7.8 77 164-257 86-163 (354)
207 PRK11573 hypothetical protein; 24.9 1.7E+02 0.0036 27.6 5.6 40 215-256 263-302 (413)
208 TIGR02194 GlrX_NrdH Glutaredox 24.8 1.7E+02 0.0037 19.7 4.4 34 219-254 29-63 (72)
209 PF09308 LuxQ-periplasm: LuxQ, 24.7 79 0.0017 27.6 3.1 18 240-257 131-148 (238)
210 TIGR00811 sit silicon transpor 24.5 1.8E+02 0.0039 28.1 5.6 35 11-45 256-290 (545)
211 COG3462 Predicted membrane pro 23.1 3E+02 0.0064 21.1 5.5 16 183-198 99-114 (117)
212 PF14827 Cache_3: Sensory doma 23.0 83 0.0018 23.6 2.7 17 240-257 93-109 (116)
213 KOG2550 IMP dehydrogenase/GMP 22.5 61 0.0013 30.7 2.1 81 164-256 72-159 (503)
214 PRK00753 psbL photosystem II r 22.5 1.2E+02 0.0025 18.6 2.6 18 12-29 20-37 (39)
215 COG3763 Uncharacterized protei 20.2 3.2E+02 0.0069 19.2 5.7 35 11-50 2-36 (71)
No 1
>PRK11573 hypothetical protein; Provisional
Probab=100.00 E-value=2.7e-53 Score=395.35 Aligned_cols=224 Identities=21% Similarity=0.364 Sum_probs=197.7
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHhHHHHHHHHHchhHHHHHHHHHHHHHHHHHHHHHh----HHH---
Q 025095 23 VMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLD----GLV--- 95 (258)
Q Consensus 23 lllsa~fs~~E~Al~s~~~~rl~~l~~~g~~~~~~~a~~~~~l~~~~~~~l~t~lig~~~~~~~~~~~~~----~~~--- 95 (258)
+++||||||+|+|++|+++.|+++++++|+++ |++++++++||+++++|+++||+++|...+.+.. ..+
T Consensus 2 i~lsafFs~~E~Al~s~~~~~l~~l~~~g~~~----a~~l~~l~~~~~~~Lstiligntl~~i~~~~l~~~~~~~~~~~~ 77 (413)
T PRK11573 2 VVISAYFSGSETGMMTLNRYRLRHMAKQGNRS----AKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDA 77 (413)
T ss_pred eehhhHHHHHHHHHHHcCHHHHHHHHHcCChh----HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 57899999999999999999999999999865 6678899999999999999999999876554322 122
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH---hcCCC----cccccHH
Q 025095 96 SAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVL---LGHGR----VALFRRA 168 (258)
Q Consensus 96 ~~~~a~~i~~~l~lvfgEi~PK~la~~~~~~~a~~~a~~l~~~~~l~~P~~~~l~~~~~~l---~~~~~----~~~~s~e 168 (258)
+.+.++++.|+++++|||++||++|.+||+++++++++|+++++++++|++|+++++++.+ +|.+. ...+|+|
T Consensus 78 ~~~ia~~i~t~l~lvfGEiiPK~la~~~~~~~a~~~a~~l~~~~~l~~P~v~~l~~~~~~l~~l~g~~~~~~~~~~~s~e 157 (413)
T PRK11573 78 GVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKE 157 (413)
T ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCCHH
Confidence 2234566778999999999999999999999999999999999999999999999887754 56532 2468999
Q ss_pred HHHHHHHhhcccccCCCCCCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCC
Q 025095 169 ELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEP 248 (258)
Q Consensus 169 El~~lv~~~~~e~~~~g~l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~ 248 (258)
||+.+++.+ . +.++++|++|++|+|+|+|++|+||||||+||++++.+++++ ++++.+.++||||||||+++.
T Consensus 158 El~~lv~~~----~--~~l~~~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~-e~~~~~~~~~~SR~PVy~~~~ 230 (413)
T PRK11573 158 ELRTIVHES----R--SQISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWK-SILRQLTHSPHGRIVLYRDSL 230 (413)
T ss_pred HHHHHHHHH----h--hhcCHHHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHH-HHHHHHHhCCCceEEEEcCCC
Confidence 999999842 2 259999999999999999999999999999999999999997 999999999999999999999
Q ss_pred CcEEEEEEe
Q 025095 249 TNIIGLILV 257 (258)
Q Consensus 249 D~IvGiv~~ 257 (258)
|||+|++|+
T Consensus 231 D~IiGiv~~ 239 (413)
T PRK11573 231 DDAISMLRV 239 (413)
T ss_pred CceEEEEEH
Confidence 999999995
No 2
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=100.00 E-value=8.5e-53 Score=391.79 Aligned_cols=227 Identities=26% Similarity=0.477 Sum_probs=199.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHhHHHHHHHHHchhHHHHHHHHHHHHHHHHHHHHHh----HHH
Q 025095 20 VFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLD----GLV 95 (258)
Q Consensus 20 ~~llllsa~fs~~E~Al~s~~~~rl~~l~~~g~~~~~~~a~~~~~l~~~~~~~l~t~lig~~~~~~~~~~~~~----~~~ 95 (258)
++|+++||||||+|+|++|+++.|+++++++|+++ |++++++++||+++++|+++||+++|.+.+.+.. .++
T Consensus 2 ~~li~lsa~Fs~~E~Al~s~~~~~l~~l~~~~~~~----a~~~~~l~~~~~~~L~tiligntl~ni~~~~~~~~~~~~~~ 77 (408)
T TIGR03520 2 ILLLLLSALVSGSEVAFFSLSPTDLNDEEEDNSKK----EQIVINLLDRPKKLLATILIANNFINIAIVLLFTSLSDNLF 77 (408)
T ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHH----HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999864 6688899999999999999999999876654332 222
Q ss_pred H--------HHHHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH---hcCCCccc
Q 025095 96 S--------AWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVL---LGHGRVAL 164 (258)
Q Consensus 96 ~--------~~~a~~i~~~l~lvfgEi~PK~la~~~~~~~a~~~a~~l~~~~~l~~P~~~~l~~~~~~l---~~~~~~~~ 164 (258)
+ ...++++.|+++++|||++||++|.+||+++++++++|+++++++++|++|+++++++.+ +|.+. ..
T Consensus 78 ~~~~~~~~~~~~~~~~~t~l~lvfgEiiPK~la~~~~~~ia~~~a~~l~~~~~l~~P~~~~l~~~~~~i~~~~g~~~-~~ 156 (408)
T TIGR03520 78 GSFNTELLRFLIEVVIVTFLILLFGEILPKVYANRNNLKFAKFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQK-SN 156 (408)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CC
Confidence 2 112355667889999999999999999999999999999999999999999999987765 45443 35
Q ss_pred ccHHHHHHHHHhhcccccCCCCCCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeee
Q 025095 165 FRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVY 244 (258)
Q Consensus 165 ~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy 244 (258)
+|+|||+.+++.+ +++| ++++|++||+|+|+|+|++|+||||||+|+++++.+++++ ++++.+.++||||+|||
T Consensus 157 ~t~eEl~~lv~~~----~~~g-~~~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~-e~~~~~~~~~~sR~PV~ 230 (408)
T TIGR03520 157 ISVDQLSQALELT----DEED-TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFS-EIIPKIIENGYSRIPVY 230 (408)
T ss_pred CCHHHHHHHHHhH----hhcC-CChHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHH-HHHHHHHhCCCCEEEEE
Confidence 8999999999843 3446 6899999999999999999999999999999999999997 99999999999999999
Q ss_pred eCCCCcEEEEEEe
Q 025095 245 YEEPTNIIGLILV 257 (258)
Q Consensus 245 ~~~~D~IvGiv~~ 257 (258)
+++.|||+|++|+
T Consensus 231 ~~~~d~ivGiv~~ 243 (408)
T TIGR03520 231 KETIDNITGVLYI 243 (408)
T ss_pred cCCCCceEEEEEH
Confidence 9999999999985
No 3
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-54 Score=382.65 Aligned_cols=237 Identities=27% Similarity=0.430 Sum_probs=212.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHhHHHHHHHHHchhHHHHHHHHHHHHHHHHHHHHH
Q 025095 12 FIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFL 91 (258)
Q Consensus 12 ~~~~l~~~~~llllsa~fs~~E~Al~s~~~~rl~~l~~~g~~~~~~~a~~~~~l~~~~~~~l~t~lig~~~~~~~~~~~~ 91 (258)
.|..++++++|+.+||||||+|+|++++||.|+++++++|+++ |+++.+++++|+++++++++|||++|++.+.+.
T Consensus 2 ~~~l~~~iiili~iSAfFSgSETal~a~nr~Rlr~la~~G~~~----Akrv~kLL~k~drlig~iLIGNNLvNilasala 77 (423)
T COG4536 2 TWILIIAIIILIIISAFFSGSETALTALNRYRLRHLAKQGNRG----AKRVEKLLEKPDRLIGTILIGNNLVNILASALA 77 (423)
T ss_pred cchHHHHHHHHHHHHHHhcccHHHHhhccHHHHHHHHHccchh----hHHHHHHhcCchheeeeeeecccHHHHHHHHHH
Confidence 5788889999999999999999999999999999999999976 778999999999999999999999998765443
Q ss_pred h----HHHH---HHHHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH---HhcCCC
Q 025095 92 D----GLVS---AWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDV---LLGHGR 161 (258)
Q Consensus 92 ~----~~~~---~~~a~~i~~~l~lvfgEi~PK~la~~~~~~~a~~~a~~l~~~~~l~~P~~~~l~~~~~~---l~~~~~ 161 (258)
. ++++ ..+|+.+.|+++++|+|++||++|..|||++++.+++++..+.++|+|++|+++++++. ++|.+.
T Consensus 78 T~~~irl~Gd~GvaIAt~~mT~vilvFaEVlPKt~Aa~~perva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~~ 157 (423)
T COG4536 78 TILGIRLYGDAGVAIATGVLTFVILVFAEVLPKTIAALYPERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINL 157 (423)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHhcchHHhhhChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCc
Confidence 2 2232 23577888999999999999999999999999999999999999999999999998765 466542
Q ss_pred ----cccccHHHHHHHHHhhcccccCCCCCCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcC
Q 025095 162 ----VALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKG 237 (258)
Q Consensus 162 ----~~~~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~ 237 (258)
+...|.||+|.+++. ++++|...+++++|+-++||+++.+|+||||||++|.+++.|++++ ++++.+.+++
T Consensus 158 ~~~~~~~~s~EElR~~v~~----~~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e-~iv~ql~~s~ 232 (423)
T COG4536 158 DQAVSQLSSKEELRTAVNE----SGSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWE-EIVRQLLHSP 232 (423)
T ss_pred ccccccccCHHHHHHHHHH----hhcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHH-HHHHHHhhCC
Confidence 346899999999984 4455888888999999999999999999999999999999999997 9999999999
Q ss_pred CceeeeeeCCCCcEEEEEEe
Q 025095 238 HSRVPVYYEEPTNIIGLILV 257 (258)
Q Consensus 238 ~SR~PVy~~~~D~IvGiv~~ 257 (258)
|+|+|||++|.|||+||+|+
T Consensus 233 HtRiplyr~~~DnIiGvlh~ 252 (423)
T COG4536 233 HTRIPLYRDDLDNIIGVLHV 252 (423)
T ss_pred CCceeeecCChhHhhhhhhH
Confidence 99999999999999999985
No 4
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=100.00 E-value=1.3e-48 Score=366.21 Aligned_cols=237 Identities=28% Similarity=0.494 Sum_probs=205.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHhHHHHHHHHHchhHHHHHHHHHHHHHHHHHHHH
Q 025095 11 GFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIF 90 (258)
Q Consensus 11 ~~~~~l~~~~~llllsa~fs~~E~Al~s~~~~rl~~l~~~g~~~~~~~a~~~~~l~~~~~~~l~t~lig~~~~~~~~~~~ 90 (258)
+.+..++++++|+++|||||++|+|++|++|.|+++++++|+++ |..++++.++|+.+++++++|+++++...+..
T Consensus 2 ~~~~~~~~i~~li~l~~ff~a~E~A~~s~~~~rl~~~~~~g~~~----a~~~~~~~~~~~~~ls~~qigitl~~i~~g~~ 77 (429)
T COG1253 2 SLILTLLLILLLIALSAFFSAAEFALVSLRRSRLEQLAEEGNKR----AKAALKLIERLNRYLSTVQLGITLVSLLLGAV 77 (429)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHccCHh----HHHHHHHHhCchhHHHHHHHHHHHHHHHHHHH
Confidence 34567788889999999999999999999999999999998865 66788999999999999999999988655443
Q ss_pred HhHHH----HHHH---------HHHHHHHHHHHHHHHhHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 025095 91 LDGLV----SAWG---------AILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLL 157 (258)
Q Consensus 91 ~~~~~----~~~~---------a~~i~~~l~lvfgEi~PK~la~~~~~~~a~~~a~~l~~~~~l~~P~~~~l~~~~~~l~ 157 (258)
....+ ..+. .+++.|+++++|||++||++|.++|++++++.++|+++++++++|++|+++++++.++
T Consensus 78 ~~~~~~~~l~~~~~~~~~~~~~~~~~~t~l~~i~gEl~PK~~a~~~~e~va~~~a~~~~~~~~l~~P~i~~~~~~a~~il 157 (429)
T COG1253 78 GEPALAALLEPLLEALGLSAALSFAIITFLHVVFGELVPKSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIANAIL 157 (429)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHHHHHhhhheeechhhhHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32211 1111 1456788999999999999999999999999999999999999999999999988764
Q ss_pred ---cCC----CcccccHHHHHHHHHhhcccccCCCCCCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHH
Q 025095 158 ---GHG----RVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELM 230 (258)
Q Consensus 158 ---~~~----~~~~~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~ 230 (258)
|.+ .+...+++|++ +++ ++.++|.++++|++||+|+|+|++++|+|+||||+||++++.+++.+ ++.
T Consensus 158 ~l~~~~~~~~~~~~~~~~~~~-~~~----~~~~~g~~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~-~~~ 231 (429)
T COG1253 158 RLFGVEPVEEEALTSTEEELE-LVS----ESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELI 231 (429)
T ss_pred HHcCCCCCCccccCccHHHHH-HHH----hHHhcCCcCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHH-HHH
Confidence 433 22346778888 776 45567999999999999999999999999999999999999999997 999
Q ss_pred HHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025095 231 NLILEKGHSRVPVYYEEPTNIIGLILV 257 (258)
Q Consensus 231 ~~~~~~~~SR~PVy~~~~D~IvGiv~~ 257 (258)
+.+.++||||+|||+++.|||+|++|+
T Consensus 232 ~~~~~~~~SR~PV~~~~~D~iiGiv~~ 258 (429)
T COG1253 232 ELILESGHSRIPVYDGDLDNIIGIVHV 258 (429)
T ss_pred HHHHhCCCCeeeEEcCCCCcEEEEEEH
Confidence 999999999999999999999999995
No 5
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=99.97 E-value=1.7e-30 Score=216.68 Aligned_cols=169 Identities=28% Similarity=0.456 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHhHHHHHHHHHchhHHHHHHHHHHHHHHHHHHHHHhH-
Q 025095 15 HIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLDG- 93 (258)
Q Consensus 15 ~l~~~~~llllsa~fs~~E~Al~s~~~~rl~~l~~~g~~~~~~~a~~~~~l~~~~~~~l~t~lig~~~~~~~~~~~~~~- 93 (258)
.++++++++++||+||++|+|++++|+.+++.++++|+++ ++++.++++||+++++|+++||++++...+.+...
T Consensus 2 ~l~~~~~ll~~~~~fs~~e~Al~~l~~~~l~~~~~~~~~~----a~~~~~l~~~~~~~l~t~~~~~~~~~~~~~~l~~~~ 77 (183)
T PF01595_consen 2 LLLLALLLLLLSAFFSAAETALFSLSRSRLEELAEEGDKR----ARRLLKLLERPERLLSTILLGNTLSNVLAGVLATVL 77 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHH----HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778999999999999999999999999999998854 66888999999999999999999988766543322
Q ss_pred ---HH----HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh---cCCC--
Q 025095 94 ---LV----SAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLL---GHGR-- 161 (258)
Q Consensus 94 ---~~----~~~~a~~i~~~l~lvfgEi~PK~la~~~~~~~a~~~a~~l~~~~~l~~P~~~~l~~~~~~l~---~~~~-- 161 (258)
.+ +.+.+.++.++++++|||++||++|.+||++++.+.+|++++++++++|++++++++.+++. |.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~lif~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~~~~ 157 (183)
T PF01595_consen 78 ASNLFGPWWALLIAFLIITLLILIFGEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGIENEE 157 (183)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 22 23445666788899999999999999999999999999999999999999999999887654 4432
Q ss_pred cccccHHHHHHHHHhhcccccCCCCCCHhH
Q 025095 162 VALFRRAELKTLVNLHGNEAGKGGELTHDE 191 (258)
Q Consensus 162 ~~~~s~eEl~~lv~~~~~e~~~~g~l~~~E 191 (258)
++.+|+|||+.+++. ++++|.++++|
T Consensus 158 ~~~~s~eel~~lv~~----~~e~G~i~~~E 183 (183)
T PF01595_consen 158 DPAVSEEELRSLVEE----GEEEGVIEEEE 183 (183)
T ss_pred cCCCCHHHHHHHHHh----HHHCCCCCCCC
Confidence 457899999999994 45679999886
No 6
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=99.95 E-value=1.5e-29 Score=239.69 Aligned_cols=251 Identities=54% Similarity=0.849 Sum_probs=227.7
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHH-hHHHHHHHHHchhHHHHHHHHHHH
Q 025095 3 VEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRK-HAAKILPVVRNQHLLLCTLLICNA 81 (258)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~llllsa~fs~~E~Al~s~~~~rl~~l~~~g~~~~~~-~a~~~~~l~~~~~~~l~t~lig~~ 81 (258)
....||++.++.+.-+..+|+++++++||.+.++.+.+-..++.+.+.|..++++ .++++....++.+.+++|.+++|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~~~~~sgltlglm~~~~~~l~~l~~s~~~~~~~~~~a~i~~~~k~~~~lL~tlll~n~ 82 (498)
T KOG2118|consen 3 NAIPKTGSFMPVTFEIIIILVLLLGLMSGLTLGLMSLTEVELEVLRKSGEVNEKKLIAAAIFPVRKNLHDLLVTLLLCNS 82 (498)
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHhhhcchhheechhhhhHHHhccCCccchhhhhhhhcccccccceeeehheehhh
Confidence 3467999999888888888999999999999999999999999999999888765 466777788889999999999999
Q ss_pred HHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 025095 82 AAMEA-LPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHG 160 (258)
Q Consensus 82 ~~~~~-~~~~~~~~~~~~~a~~i~~~l~lvfgEi~PK~la~~~~~~~a~~~a~~l~~~~~l~~P~~~~l~~~~~~l~~~~ 160 (258)
+++.+ ++.++....+.|.++.+++..++.|||++|++++.++...+.....++.+++.++++|+.|+++++ ++.+|..
T Consensus 83 ~~~e~~L~i~~~~~~~~~~a~~is~~~i~~~geIipq~vc~~~gl~vga~~~~~~~i~~~l~~PI~~p~~~~-d~~lg~~ 161 (498)
T KOG2118|consen 83 IATEAVLPFFLDAESGESGALRISVTEILIFGEIIPQSVCVKYGLAVGANLVPLVRILSFLCLPIAYPFSKL-DTALGLN 161 (498)
T ss_pred hccccccceeecccccccceEecceeeeeecccccchHHHhhhcccccccceehHHHHHHHhhhhheehhhh-hhhhccc
Confidence 99988 777777666678888999999999999999999999999999999999999999999999999988 7788877
Q ss_pred CcccccHHHHHHHHHhhcccccCCCCCCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCce
Q 025095 161 RVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSR 240 (258)
Q Consensus 161 ~~~~~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR 240 (258)
.+....+.++..++..+++|+++ |.+..+|..+|.+++++.++.++|||||-.++++++.+..++.+....+.++||||
T Consensus 162 ~~~~~~~~~l~~lv~~~~~e~~~-g~~~~~e~~ii~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sr 240 (498)
T KOG2118|consen 162 LGEFLKRASLLALVQLVGNEAGK-GDLTYDELTIITGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSR 240 (498)
T ss_pred cccchhhHHHHHHHHHHhccccc-CcccchhhhHhhhhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcce
Confidence 66667788999999988877766 99999999999999999999999999999999999999999888899999999999
Q ss_pred eeeeeCCCCcEEEEE
Q 025095 241 VPVYYEEPTNIIGLI 255 (258)
Q Consensus 241 ~PVy~~~~D~IvGiv 255 (258)
+|||+++..|++|.+
T Consensus 241 ipv~~~~~~~~i~~~ 255 (498)
T KOG2118|consen 241 IPVYEQEPKNKIGGL 255 (498)
T ss_pred eeeccCcccchhhHH
Confidence 999999988888863
No 7
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.82 E-value=4.4e-20 Score=165.20 Aligned_cols=96 Identities=25% Similarity=0.479 Sum_probs=86.6
Q ss_pred HHHhcCCCcccccHHHHHHHHHhhcccccCCCCCCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHH
Q 025095 154 DVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLI 233 (258)
Q Consensus 154 ~~l~~~~~~~~~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~ 233 (258)
.+++|.+. .|+|||+.+++. +.++|.++++|++||+|+|+|++++|+++|+||.++++++.+++++ ++++.+
T Consensus 24 ~~~~~~~~---~t~eEl~~l~~~----~~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~-e~~~~i 95 (292)
T PRK15094 24 SQLFHGEP---KNRDELLALIRD----SEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDVI 95 (292)
T ss_pred HHHcCCCC---CCHHHHHHHHHh----HhhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHH-HHHHHH
Confidence 33455543 489999999984 4456999999999999999999999999999999999999999997 999999
Q ss_pred HHcCCceeeeeeCCCCcEEEEEEe
Q 025095 234 LEKGHSRVPVYYEEPTNIIGLILV 257 (258)
Q Consensus 234 ~~~~~SR~PVy~~~~D~IvGiv~~ 257 (258)
.+++|||||||+++.|+++|++|+
T Consensus 96 ~~~~~sr~PV~~~~~d~iiGiv~~ 119 (292)
T PRK15094 96 IESAHSRFPVISEDKDHIEGILMA 119 (292)
T ss_pred HhcCCcEEEEecCCCCcEEEEEEH
Confidence 999999999999988999999985
No 8
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.77 E-value=2.3e-19 Score=151.82 Aligned_cols=100 Identities=26% Similarity=0.496 Sum_probs=87.6
Q ss_pred HHHHHHHhcCCCcccccHHHHHHHHHhhcccccCCCCCCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHH
Q 025095 150 SKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKEL 229 (258)
Q Consensus 150 ~~~~~~l~~~~~~~~~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~ 229 (258)
..+++.+|..++ -+++|+-.++. ++++.+.++++-.+|+++++++.|.+|||||+||++|++++.+.+++ +.
T Consensus 20 e~L~~~~f~gEp---knr~eLl~liR----dse~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~-~~ 91 (293)
T COG4535 20 ERLLSQLFHGEP---KNREELLELIR----DSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-EC 91 (293)
T ss_pred HHHHHHHhcCCC---cCHHHHHHHHH----HhhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHH-HH
Confidence 334444444333 47899999998 45567899999999999999999999999999999999999999997 99
Q ss_pred HHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025095 230 MNLILEKGHSRVPVYYEEPTNIIGLILV 257 (258)
Q Consensus 230 ~~~~~~~~~SR~PVy~~~~D~IvGiv~~ 257 (258)
+..+.++.||||||+.++.|+|.||+++
T Consensus 92 l~~iiesaHSRfPVi~edkD~v~GIL~A 119 (293)
T COG4535 92 LDVIIESAHSRFPVISEDKDHVEGILLA 119 (293)
T ss_pred HHHHHHhccccCCcccCCchhhhhhhhH
Confidence 9999999999999999999999999874
No 9
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.59 E-value=1.5e-07 Score=89.31 Aligned_cols=83 Identities=13% Similarity=0.282 Sum_probs=70.1
Q ss_pred ccccHHHHHHHHHhhcccccCCCCCCH-----hHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcC
Q 025095 163 ALFRRAELKTLVNLHGNEAGKGGELTH-----DETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKG 237 (258)
Q Consensus 163 ~~~s~eEl~~lv~~~~~e~~~~g~l~~-----~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~ 237 (258)
..+|++|+..++.. .+..|.+.+ +|.+++++++++++. |++ ++++++.+++++ ++++.+.+++
T Consensus 43 dtvTe~ema~~ma~----~gg~GvI~~n~~~e~q~~~V~~Vk~~~~~-----~~~--~~vtl~~~~tv~-eal~~m~~~~ 110 (450)
T TIGR01302 43 DTVTESRMAIAMAR----EGGIGVIHRNMSIEEQAEQVKRVKRAENG-----IIS--DPVTISPETTVA-DVLELMERKG 110 (450)
T ss_pred CccCHHHHHHHHHh----cCCCceeecCCCHHHHHHHHhhhccccCc-----eec--CceEeCCCCCHH-HHHHHHHHcC
Confidence 35799999999974 334688984 899999999988775 443 678999999997 9999999999
Q ss_pred CceeeeeeCCC--CcEEEEEEe
Q 025095 238 HSRVPVYYEEP--TNIIGLILV 257 (258)
Q Consensus 238 ~SR~PVy~~~~--D~IvGiv~~ 257 (258)
|+++||++++. |+++|+++.
T Consensus 111 ~s~lpVvd~~~~~~~lvGIVt~ 132 (450)
T TIGR01302 111 ISGIPVVEDGDMTGKLVGIITK 132 (450)
T ss_pred CCEEEEEeCCCCCCeEEEEEEH
Confidence 99999999875 799999973
No 10
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.48 E-value=3.9e-07 Score=86.45 Aligned_cols=87 Identities=15% Similarity=0.221 Sum_probs=72.6
Q ss_pred cccHHHHHHHHHhhcccccCC------CCCCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHH--
Q 025095 164 LFRRAELKTLVNLHGNEAGKG------GELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILE-- 235 (258)
Q Consensus 164 ~~s~eEl~~lv~~~~~e~~~~------g~l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~-- 235 (258)
.+++||+..+++.. .++ +.++++|++++++++++++.+|+++|+ +++.+++.+++++ ++++.+++
T Consensus 89 ~l~~dd~~~ll~~l----~~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt--~~~~~v~~~~tv~-eal~~l~~~~ 161 (449)
T TIGR00400 89 EMNLDDVIDLLEEV----PANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMT--IEYVELKEDYTVG-KALDYIRRVA 161 (449)
T ss_pred cCChhHHHHHHHhC----CHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCc--CceEEECCCCcHH-HHHHHHHhcC
Confidence 46789999999743 222 479999999999999999999999999 5899999999997 99999975
Q ss_pred -cCCceeeee-eCCCCcEEEEEEe
Q 025095 236 -KGHSRVPVY-YEEPTNIIGLILV 257 (258)
Q Consensus 236 -~~~SR~PVy-~~~~D~IvGiv~~ 257 (258)
.+++++++| .++.|+++|+++.
T Consensus 162 ~~~~~~~~v~Vvd~~~~l~GvV~l 185 (449)
T TIGR00400 162 KTKEDIYTLYVTNESKHLKGVLSI 185 (449)
T ss_pred CCccceeEEEEECCCCeEEEEEEH
Confidence 457778877 4556889999973
No 11
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.38 E-value=5.7e-07 Score=60.11 Aligned_cols=47 Identities=30% Similarity=0.598 Sum_probs=43.6
Q ss_pred ccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 206 ASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 206 v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
|+++|+| +..+++.++++. ++.+.+.+++++++||++++ +.++|+++
T Consensus 1 v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~is 47 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLE-EALEIMRKNGISRLPVVDED-GKLVGIIS 47 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHH-HHHHHHHHHTSSEEEEESTT-SBEEEEEE
T ss_pred CeECCcC--CCEEEcCcCcHH-HHHHHHHHcCCcEEEEEecC-CEEEEEEE
Confidence 5789998 899999999997 99999999999999999876 99999986
No 12
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.82 E-value=6.7e-05 Score=71.98 Aligned_cols=81 Identities=17% Similarity=0.283 Sum_probs=67.9
Q ss_pred ccccHHHHHHHHHhhcccccCCCCCC-----HhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcC
Q 025095 163 ALFRRAELKTLVNLHGNEAGKGGELT-----HDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKG 237 (258)
Q Consensus 163 ~~~s~eEl~~lv~~~~~e~~~~g~l~-----~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~ 237 (258)
..+|++|+...+.. .+..|.|. ++++++++++.+++ ++|+ .++.+++.+++++ ++++.+.+++
T Consensus 50 ~~vT~~ela~ava~----~GglG~i~~~~~~e~~~~~I~~vk~~~-----dim~--~~~v~i~~~~tv~-ea~~~m~~~~ 117 (486)
T PRK05567 50 DTVTEARMAIAMAR----EGGIGVIHKNMSIEEQAEEVRKVKRSE-----SGVV--TDPVTVTPDTTLA-EALALMARYG 117 (486)
T ss_pred CCcCHHHHHHHHHh----CCCCCEecCCCCHHHHHHHHHHhhhhh-----hccc--CCCeEeCCCCCHH-HHHHHHHHhC
Confidence 35799999999973 44557787 58899999999654 5666 5788899999997 9999999999
Q ss_pred CceeeeeeCCCCcEEEEEE
Q 025095 238 HSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 238 ~SR~PVy~~~~D~IvGiv~ 256 (258)
|+++||+++ .++++|+++
T Consensus 118 ~~~lpVvd~-~g~lvGiVt 135 (486)
T PRK05567 118 ISGVPVVDE-NGKLVGIIT 135 (486)
T ss_pred CCEEEEEcc-CCEEEEEEE
Confidence 999999985 588999986
No 13
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=97.80 E-value=2.6e-05 Score=70.52 Aligned_cols=65 Identities=28% Similarity=0.489 Sum_probs=54.9
Q ss_pred HHHHHHhhh-----ccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025095 191 ETTIIAGAL-----ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV 257 (258)
Q Consensus 191 E~~mi~~i~-----~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~ 257 (258)
-..||.+++ .=+=.+|.|||+|.++-.++..+++++ +..+...++|||||||.++. -.++|+|..
T Consensus 170 VAtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~-d~~~l~~kt~~sRfPVvn~~-~kvvGvVt~ 239 (432)
T COG4109 170 VATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVE-DWLDLVEKTGHSRFPVVNRS-MKVVGVVTM 239 (432)
T ss_pred HHHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHH-HHHHHHHHcCCCccceeccc-ceEEEEEEe
Confidence 345666655 345578999999999999999999997 99999999999999999763 679999863
No 14
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.37 E-value=0.0004 Score=51.90 Aligned_cols=59 Identities=22% Similarity=0.331 Sum_probs=47.4
Q ss_pred HHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025095 195 IAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV 257 (258)
Q Consensus 195 i~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~ 257 (258)
+.+-.+.++.++.++|.|. +..++.++++. ++++.+.+++.+++||.+++ ++++|+++.
T Consensus 50 ~~~~~~~~~~~v~~~~~~~--~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~iG~it~ 108 (114)
T cd04604 50 LEKGLDILTLPVADVMTRN--PKTIDPDALAA-EALELMEENKITALPVVDDN-GRPVGVLHI 108 (114)
T ss_pred HhccCccccCCHHHhhccC--CeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEEEH
Confidence 3333445556899999874 56789999997 99999999999999999764 889999863
No 15
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.26 E-value=0.00051 Score=51.69 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=43.1
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+.++.++|.+ +..+++.++++. ++++.+.+++.+++||.+++ ++++|+++
T Consensus 55 ~~~v~~~~~~--~~~~v~~~~~l~-~al~~m~~~~~~~lpVvd~~-~~~~Giit 104 (111)
T cd04603 55 TLKVCEVYIV--PVPIVYCDSKVT-DLLRIFRETEPPVVAVVDKE-GKLVGTIY 104 (111)
T ss_pred ccChhheeec--CCcEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CeEEEEEE
Confidence 4579999954 567899999997 99999999999999999865 68999986
No 16
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.22 E-value=0.00063 Score=51.13 Aligned_cols=52 Identities=29% Similarity=0.454 Sum_probs=45.6
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+.+++++|.|-.+...++.++++. ++++.+.+++.+++||.++ .++++|+++
T Consensus 56 ~~~v~~~~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vv~~-~~~~~Gvl~ 107 (114)
T cd04801 56 QTTVIQVMTPAAKLVTVLSEESLA-EVLKLLEEQGLDELAVVED-SGQVIGLIT 107 (114)
T ss_pred ccchhhhhcccccceEECCCCcHH-HHHHHHHHCCCCeeEEEcC-CCcEEEEEe
Confidence 567999999876677899999997 9999999999999999976 368999986
No 17
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.18 E-value=0.00086 Score=51.12 Aligned_cols=49 Identities=22% Similarity=0.334 Sum_probs=42.9
Q ss_pred ccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 204 ~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
.+++++|.+ +...++.++++. ++++.+.+.++..+||.+++ ++++|++.
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~-~a~~~~~~~~~~~lpVvd~~-~~l~Givt 106 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLR-EALNLMHEHNIRTLPVVDDD-GTPAGIIT 106 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEE
Confidence 679999986 577789999997 99999999999999999764 67999986
No 18
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=97.17 E-value=0.0093 Score=53.16 Aligned_cols=85 Identities=18% Similarity=0.342 Sum_probs=65.8
Q ss_pred cccHHHHHHHHHhhcccccCCCCCCHhHHHHHHhh-------hccccccccccccccceEEEEeCCCCccHHHHHHHHHc
Q 025095 164 LFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGA-------LELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEK 236 (258)
Q Consensus 164 ~~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~i-------~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~ 236 (258)
.+|.+++...++. -+|.=+++.++-+-+-+= =.+.+.+..|||.+ |+++++.+++++ ++.+++.++
T Consensus 202 gfs~~Dld~aL~~----~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSr--dVvtv~~~ts~d-hA~~ll~~H 274 (382)
T COG3448 202 GFSSEDLDAALQR----LGETLDIDRDDLERLLRETELQALRRRMGELTCADIMSR--DVVTVSTDTSID-HARKLLQEH 274 (382)
T ss_pred CCCHHHHHHHHHh----cCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc--cceecCCcCChH-HHHHHHHHc
Confidence 4788999988873 233445666553332221 14678999999996 999999999998 999999999
Q ss_pred CCceeeeeeCCCCcEEEEEE
Q 025095 237 GHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 237 ~~SR~PVy~~~~D~IvGiv~ 256 (258)
+.--+||.+++ ..++|+|.
T Consensus 275 ~ikaLPV~d~~-~rl~GiVt 293 (382)
T COG3448 275 RIKALPVLDEH-RRLVGIVT 293 (382)
T ss_pred Ccccccccccc-cceeeeee
Confidence 99999999764 78999974
No 19
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.17 E-value=0.00083 Score=51.02 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=46.3
Q ss_pred cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCC--CcEEEEEE
Q 025095 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEP--TNIIGLIL 256 (258)
Q Consensus 201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~--D~IvGiv~ 256 (258)
+.+.++.++|+.-.++..++.++++. ++++.+.+++++++||.+++. ++++|+++
T Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit 111 (118)
T cd04617 55 LQKVPVGVIMTRMPNITTTTPEESVL-EAAKKLIEHQVDSLPVVEKVDEGLEVIGRIT 111 (118)
T ss_pred ccCCCHHHHhCCCCCcEEECCCCcHH-HHHHHHHHcCCCEeeEEeCCCccceEEEEEE
Confidence 35677889997434688999999997 999999999999999998753 57999986
No 20
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.15 E-value=0.00079 Score=50.10 Aligned_cols=49 Identities=22% Similarity=0.449 Sum_probs=43.5
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+.+++++|.+ +...++.++++. ++++.+.+++++++||.++ ++++|++.
T Consensus 58 ~~~~~~~~~~--~~~~v~~~~~~~-~~l~~~~~~~~~~~~Vv~~--~~~~Gvit 106 (113)
T cd04623 58 DTPVSEIMTR--NVITVTPDDTVD-EAMALMTERRFRHLPVVDG--GKLVGIVS 106 (113)
T ss_pred ccCHHHhcCC--CcEEECCCCcHH-HHHHHHHHcCCCEeEEEeC--CEEEEEEE
Confidence 5688999966 678899999997 9999999999999999986 89999986
No 21
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.04 E-value=0.00069 Score=52.15 Aligned_cols=54 Identities=30% Similarity=0.404 Sum_probs=43.3
Q ss_pred ccccccccccccceEEEEe----CCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 202 TEKTASDAMTPIAETFAID----INAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 202 ~~~~v~eiM~PR~~v~~l~----~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
.+.+++++|.+......++ .++++. ++++.+.+++.+++||++++.++++|++.
T Consensus 62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~-~~l~~m~~~~~~~lpVvd~~~~~~~G~it 119 (126)
T cd04640 62 SELTVADVMTPKEDLKALDLEELENASVG-DVVETLKASGRQHALVVDREHHQIRGIIS 119 (126)
T ss_pred hheEHHHhcCchhhhccccHHHhccCcHH-HHHHHHHHCCCceEEEEECCCCEEEEEEe
Confidence 4577999997655455554 578886 89999999999999999875457999986
No 22
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.02 E-value=0.001 Score=50.04 Aligned_cols=52 Identities=29% Similarity=0.509 Sum_probs=45.2
Q ss_pred cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
.++.++.++|.+ +...++.+++++ ++++.+.+.+++++||++++ ++++|++.
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvvt 115 (122)
T cd04585 64 LSKIKVSDIMTR--DPITVSPDASVE-EAAELMLERKISGLPVVDDQ-GRLVGIIT 115 (122)
T ss_pred hcccCHHHhccC--CCeEeCCCCcHH-HHHHHHHHcCCCceeEECCC-CcEEEEEE
Confidence 456789999976 678899999997 99999999999999999764 68999986
No 23
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.97 E-value=0.0014 Score=49.49 Aligned_cols=51 Identities=16% Similarity=0.309 Sum_probs=43.7
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
.+.+++++|.. +...++.+++++ ++++.+.+++..++||.+++ ++++|+++
T Consensus 57 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~~Gvi~ 107 (114)
T cd04619 57 CTAPVENVMTR--AVVSCRPGDLLH-DVWQVMKQRGLKNIPVVDEN-ARPLGVLN 107 (114)
T ss_pred ccCCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeEEEECCC-CcEEEEEE
Confidence 34678899964 677899999997 99999999999999999864 68999986
No 24
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.89 E-value=0.0019 Score=47.65 Aligned_cols=50 Identities=20% Similarity=0.375 Sum_probs=42.5
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+..++++|.++ ..+++.++++. ++++.+.+++.+++||.+++ ++++|++.
T Consensus 51 ~~~~~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvi~ 100 (107)
T cd04610 51 DETVEEIMSKD--LVVAVPEMDIM-DAARVMFRTGISKLPVVDEN-NNLVGIIT 100 (107)
T ss_pred cccHHHhCCCC--CeEECCCCCHH-HHHHHHHHhCCCeEeEECCC-CeEEEEEE
Confidence 45799999764 56788999997 99999999999999999865 68999986
No 25
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.83 E-value=0.0018 Score=62.45 Aligned_cols=54 Identities=19% Similarity=0.349 Sum_probs=48.4
Q ss_pred cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
..+.+|+|+|+|..+..+++.++++. ++++.+.+++.+++||.+++ ++++|+|.
T Consensus 158 ~~~~~V~dIMt~~~~~itv~~d~~l~-eAl~lM~e~~i~~LPVVD~~-g~LvGIIT 211 (502)
T PRK07107 158 SLDTKVKDFMTPFEKLVTANEGTTLK-EANDIIWDHKLNTLPIVDKN-GNLVYLVF 211 (502)
T ss_pred CCCCCHHHHhCCCCCeEEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEE
Confidence 45688999999988899999999997 99999999999999999754 67999986
No 26
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=96.81 E-value=0.0019 Score=48.72 Aligned_cols=52 Identities=19% Similarity=0.295 Sum_probs=45.5
Q ss_pred ccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 200 ~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
...+.+++++|.+ +..+++.+++++ ++++.+.+.+++.+||.++ ++++|+++
T Consensus 63 ~~~~~~v~~~~~~--~~~~i~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~~Gvv~ 114 (121)
T cd04584 63 LLLKMPVKEIMTK--DVITVHPLDTVE-EAALLMREHRIGCLPVVED--GRLVGIIT 114 (121)
T ss_pred hhcCcCHHHHhhC--CCeEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEE
Confidence 3567789999976 578899999997 9999999999999999976 78999987
No 27
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.81 E-value=0.0025 Score=47.32 Aligned_cols=41 Identities=20% Similarity=0.309 Sum_probs=36.0
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV 257 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~ 257 (258)
++..++.+++++ ++++.+.+.+|+++||++++ ++++|+++.
T Consensus 2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~ 42 (113)
T cd04623 2 DVITVRPDATVA-EAAKLMAEKNIGAVVVVDDG-GRLVGIFSE 42 (113)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEeh
Confidence 567889999997 99999999999999999865 789999974
No 28
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.81 E-value=0.0035 Score=46.67 Aligned_cols=50 Identities=24% Similarity=0.430 Sum_probs=42.8
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
.+.+++++|.+ +...++.+++++ ++++.+.+++..++||.++ ++++|+++
T Consensus 56 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~Vv~~--~~~~Gvvt 105 (112)
T cd04625 56 LDTTVRAIMNP--EPIVASPDDSID-EVRRLMVERHLRYLPVLDG--GTLLGVIS 105 (112)
T ss_pred hcCCHHHHhCC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEEC--CEEEEEEE
Confidence 35679999954 577899999997 9999999999999999974 78999986
No 29
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.78 E-value=0.0023 Score=50.28 Aligned_cols=50 Identities=32% Similarity=0.436 Sum_probs=43.4
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
.+.+++++|++ +...++.+++++ ++++.+.+.++.++||.++ ++++|++.
T Consensus 79 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~--~~~~Gvit 128 (135)
T cd04621 79 VPLVAEDIMTE--EIITVSPNDDVV-DAAKLMLEANISGLPVVDN--DNIVGVIT 128 (135)
T ss_pred ccccHHHhcCC--CCeEECCCCCHH-HHHHHHHHcCCCEEEEEeC--CEEEEEEE
Confidence 35689999976 456799999997 9999999999999999986 78999986
No 30
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=96.77 E-value=0.0035 Score=46.18 Aligned_cols=49 Identities=14% Similarity=0.333 Sum_probs=41.5
Q ss_pred ccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 204 ~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
.++.++|.|. ...++.++++. ++++.+.+.+++++||.+++ ++++|++.
T Consensus 51 ~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~ 99 (106)
T cd04582 51 GCCGDHAEPF--KVTVSVDDDLR-IVLSRMFAHDMSWLPCVDED-GRYVGEVT 99 (106)
T ss_pred cchhhhcccC--CEEECCCCCHH-HHHHHHHHCCCCeeeEECCC-CcEEEEEE
Confidence 3578999764 45689999997 99999999999999999765 78999986
No 31
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.75 E-value=0.0028 Score=47.57 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=43.5
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
.+.+++++|.+ ++..++.++++. ++++.+.+.+..++||.++ +.++|++.
T Consensus 58 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~ 107 (114)
T cd04630 58 DRVNVYEIMTK--PLISVSPDMDIK-YCARLMERTNIRRAPVVEN--NELIGIIS 107 (114)
T ss_pred CccCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCEeeEeeC--CEEEEEEE
Confidence 45678899953 678999999997 9999999999999999976 78999986
No 32
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.74 E-value=0.0029 Score=47.33 Aligned_cols=50 Identities=20% Similarity=0.459 Sum_probs=42.7
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+.+++++|.+ ...+++.++++. ++++.+.+++.+++||.+++ ++++|++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit 106 (113)
T cd04607 57 DDPVSEVMNR--NPITAKVGSSRE-EILALMRERSIRHLPILDEE-GRVVGLAT 106 (113)
T ss_pred CCCHHHhhcC--CCEEEcCCCCHH-HHHHHHHHCCCCEEEEECCC-CCEEEEEE
Confidence 4568899965 466899999997 99999999999999999754 78999986
No 33
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=96.70 E-value=0.0039 Score=46.32 Aligned_cols=51 Identities=20% Similarity=0.354 Sum_probs=43.9
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+.++.++|.+. ..+++.++++. ++++.+.+.+++++||++++.++++|++.
T Consensus 57 ~~~v~~~~~~~--~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt 107 (114)
T cd04613 57 LVVASDIMTKP--PVVVYPEDSLE-DALKKFEDSDYEQLPVVDDDPGKLLGILS 107 (114)
T ss_pred cEEHHHhccCC--CcEEcCCCCHH-HHHHHHhhCCccEeeEEeCCCCEEEEEEE
Confidence 57899999864 67789999997 99999999999999999763478999986
No 34
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=96.67 E-value=0.0038 Score=46.15 Aligned_cols=50 Identities=30% Similarity=0.484 Sum_probs=40.4
Q ss_pred cccccccccccceEEEEeC-CCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 203 EKTASDAMTPIAETFAIDI-NAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 203 ~~~v~eiM~PR~~v~~l~~-~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+.++.++|.++.. .+.. ++++. ++++.+.+.+++++||.+++ ++++|+++
T Consensus 53 ~~~v~~~~~~~~~--~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~ 103 (110)
T cd04601 53 DKPVSEVMTPENL--LTTVEGTSLE-EALELLHEHKIEKLPVVDDE-GKLKGLIT 103 (110)
T ss_pred CCCHHHhcccCce--EEecCCCCHH-HHHHHHHHhCCCeeeEEcCC-CCEEEEEE
Confidence 4678999965443 3444 88886 89999999999999999864 68999986
No 35
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=96.66 E-value=0.0033 Score=46.81 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=43.6
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
.+.+++++|.+ +...++.++++. ++++.+.++++.++||.++ ++++|++.
T Consensus 55 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it 104 (111)
T cd04589 55 SSTPVGEIATF--PLITVDPDDFLF-NALLLMTRHRIHRVVVREG--GEVVGVLE 104 (111)
T ss_pred CCCCHHHHhCC--CcEEECCCCcHH-HHHHHHHHhCccEEEEeeC--CEEEEEEE
Confidence 45678999965 678899999996 9999999999999999975 78999986
No 36
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.66 E-value=0.003 Score=48.84 Aligned_cols=50 Identities=20% Similarity=0.462 Sum_probs=43.2
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
...++.++|.+ ++..++.++++. ++++.+.+.+++++||.++ +.++|++.
T Consensus 76 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~iGvit 125 (132)
T cd04636 76 LGKKVEEIMTK--KVITVDEDTTIE-DVARIMSKKNIKRLPVVDD--GKLVGIIS 125 (132)
T ss_pred cCCCHHHhccC--CceEECCCCcHH-HHHHHHHHCCCCeeEEEEC--CEEEEEEE
Confidence 34478899965 578899999997 9999999999999999986 88999986
No 37
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.65 E-value=0.0038 Score=46.51 Aligned_cols=51 Identities=27% Similarity=0.527 Sum_probs=43.7
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025095 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV 257 (258)
Q Consensus 202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~ 257 (258)
.+.+++++|.+ ++..++.++++. ++++.+.+++..++||.+++ +++|+++.
T Consensus 56 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~--~~~Gvi~~ 106 (112)
T cd04802 56 REVPVGEVMST--PLITIDPNASLN-EAAKLMAKHGIKRLPVVDDD--ELVGIVTT 106 (112)
T ss_pred ccCCHHHhcCC--CcEEECCCCCHH-HHHHHHHHcCCCeeEEeeCC--EEEEEEEh
Confidence 45678999975 577889999997 99999999999999999864 89999863
No 38
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=96.64 E-value=0.0035 Score=46.68 Aligned_cols=51 Identities=20% Similarity=0.367 Sum_probs=43.3
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025095 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV 257 (258)
Q Consensus 203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~ 257 (258)
++++.++|.+ +..+++.++++. ++++.+.+++..++||.+++ ++++|+++.
T Consensus 57 ~~~v~~i~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~~-~~~~Gvvs~ 107 (113)
T cd04587 57 STLVERVMTP--NPVCATSDTPVL-EALHLMVQGKFRHLPVVDKS-GQVVGLLDV 107 (113)
T ss_pred cCCHHHhcCC--CCeEEcCCCCHH-HHHHHHHHcCCCcccEECCC-CCEEEEEEH
Confidence 3678999964 566799999997 99999999999999999875 789999863
No 39
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.64 E-value=0.0038 Score=46.47 Aligned_cols=51 Identities=24% Similarity=0.424 Sum_probs=43.0
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+..+++++|.+ +...++.+++++ ++++.+.+++.+++||.+++ ++++|+++
T Consensus 56 ~~~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it 106 (113)
T cd04622 56 DTTTVGDVMTR--GVVTVTEDDDVD-EAARLMREHQVRRLPVVDDD-GRLVGIVS 106 (113)
T ss_pred ccCCHHHhccC--CccEECCCCCHH-HHHHHHHHcCCCeeeEECCC-CcEEEEEE
Confidence 34459999975 567789999997 99999999999999999764 78999986
No 40
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.61 E-value=0.0027 Score=48.00 Aligned_cols=51 Identities=22% Similarity=0.456 Sum_probs=44.5
Q ss_pred cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+++.++.++|.+ +...++.++++. ++++.+.+.+++++||+++ +.++|++.
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~ 114 (121)
T cd04633 64 IRNLPVSDIMTR--PVITIEPDTSVS-DVASLMLENNIGGLPVVDD--GKLVGIVT 114 (121)
T ss_pred hhccCHHHHccC--CceEECCCCcHH-HHHHHHHHcCCCcccEEEC--CEEEEEEE
Confidence 456788899965 677899999997 9999999999999999986 78999986
No 41
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=96.58 E-value=0.0032 Score=57.06 Aligned_cols=52 Identities=19% Similarity=0.318 Sum_probs=45.4
Q ss_pred ccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 200 ~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
++.+.+|+++|++ +..+++.++++. ++++.+.+++..++||.++ ++++|++.
T Consensus 265 ~~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~--~~lvGiit 316 (326)
T PRK10892 265 DLRQASIADVMTP--GGIRVRPGILAV-DALNLMQSRHITSVLVADG--DHLLGVLH 316 (326)
T ss_pred CcccCCHHHhcCC--CCEEECCCCCHH-HHHHHHHHCCCcEEEEeeC--CEEEEEEE
Confidence 3557789999986 678899999997 9999999999999999974 68999985
No 42
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.55 E-value=0.0043 Score=45.51 Aligned_cols=50 Identities=36% Similarity=0.486 Sum_probs=43.6
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
.+..++++|.+ +...++.++++. ++++.+.+++.+++||.++ +.++|+++
T Consensus 49 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it 98 (105)
T cd04599 49 PNRLVADAMTR--EVVTISPEASLL-EAKRLMEEKKIERLPVLRE--RKLVGIIT 98 (105)
T ss_pred ccCCHHHHccC--CCEEECCCCCHH-HHHHHHHHcCCCEeeEEEC--CEEEEEEE
Confidence 35678999965 577889999997 9999999999999999986 78999986
No 43
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=96.55 E-value=0.0035 Score=60.47 Aligned_cols=53 Identities=17% Similarity=0.327 Sum_probs=47.6
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
.+.+|+++|+|..++.+++.+++++ ++++.+.+++..++||.+++ ++++|++.
T Consensus 161 ~~~~V~eIMt~~~~lvtv~~~~sL~-eAl~~m~~~~~~~LPVVD~~-g~LvGvIT 213 (505)
T PLN02274 161 RETKLSEVMTSDDDLVTAPAGIDLE-EAEAVLKDSKKGKLPLVNED-GELVDLVT 213 (505)
T ss_pred cCCcHHHHhccCCCcEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEE
Confidence 4678999999988899999999997 99999999999999999753 67999986
No 44
>COG0517 FOG: CBS domain [General function prediction only]
Probab=96.54 E-value=0.009 Score=44.63 Aligned_cols=50 Identities=24% Similarity=0.505 Sum_probs=43.7
Q ss_pred cccccccccceEEEEeCCCCccHHHHHHHHH-cCCceeeeeeCCCCcEEEEEEe
Q 025095 205 TASDAMTPIAETFAIDINAKLDKELMNLILE-KGHSRVPVYYEEPTNIIGLILV 257 (258)
Q Consensus 205 ~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~-~~~SR~PVy~~~~D~IvGiv~~ 257 (258)
.+.++|++ ...+++.+++++ ++.+.+.+ .+++++||.+++..+++|+++.
T Consensus 63 ~v~~v~~~--~~~~~~~~~~~~-~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~ 113 (117)
T COG0517 63 PVKEVMTK--PVVTVDPDTPLE-EALELMVERHKIRRLPVVDDDGGKLVGIITL 113 (117)
T ss_pred cHHHhccC--CcEEECCCCCHH-HHHHHHHHHcCcCeEEEEECCCCeEEEEEEH
Confidence 79999997 788899999997 99999999 7999999998753489999863
No 45
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.54 E-value=0.0053 Score=45.33 Aligned_cols=40 Identities=23% Similarity=0.416 Sum_probs=36.0
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
++++++.+++.. ++++.+.+.+++++||++++ ++++|+++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~v~ 41 (106)
T cd04638 2 NVVYVTLPGTRD-DVLELLKEYKVSGVPVVKKS-GELVGIIT 41 (106)
T ss_pred CcEEECCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEE
Confidence 678899999997 89999999999999999876 88999987
No 46
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.54 E-value=0.0064 Score=44.99 Aligned_cols=42 Identities=14% Similarity=0.408 Sum_probs=37.3
Q ss_pred ceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 214 ~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+++.+++.++++. ++.+.+.+++++.+||.+++.++.+|++.
T Consensus 1 ~~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~~~~~~Givt 42 (98)
T cd04618 1 SKLVVFDTKLPVK-KAFNALVENGIRSAPLWDSRKQQFVGMLT 42 (98)
T ss_pred CeEEEECCCCcHH-HHHHHHHHcCCceEEEEeCCCCEEEEEEE
Confidence 3678999999997 99999999999999999875578999986
No 47
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=96.52 E-value=0.0049 Score=37.89 Aligned_cols=39 Identities=28% Similarity=0.578 Sum_probs=33.8
Q ss_pred EEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 216 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 216 v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+..++.+++.. ++.+.+.+.+++++||++++ ++++|++.
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~i~ 40 (49)
T smart00116 2 VVTVSPDTTLE-EALELLREHGIRRLPVVDEE-GRLVGIVT 40 (49)
T ss_pred ceEecCCCcHH-HHHHHHHHhCCCcccEECCC-CeEEEEEE
Confidence 45678889986 89999999999999999875 78999986
No 48
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.51 E-value=0.005 Score=45.88 Aligned_cols=53 Identities=21% Similarity=0.359 Sum_probs=44.1
Q ss_pred cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025095 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV 257 (258)
Q Consensus 201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~ 257 (258)
+.+.++.++|.+ +..+++.++++. ++++.+.+++.+++||.+++ ++++|+++.
T Consensus 55 ~~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvvt~ 107 (113)
T cd04615 55 LKDAKVREVMNS--PVITIDANDSIA-KARWLMSNNNISRLPVLDDK-GKVGGIVTE 107 (113)
T ss_pred hcCCcHHHhccC--CceEECCCCcHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEEH
Confidence 345678899975 577899999997 99999999999999999754 689999863
No 49
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.48 E-value=0.0051 Score=45.76 Aligned_cols=50 Identities=24% Similarity=0.501 Sum_probs=43.2
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025095 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV 257 (258)
Q Consensus 203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~ 257 (258)
+.++.++|. .+...++.++++. ++++.+.+++..++||.++ +.++|++..
T Consensus 56 ~~~v~~~~~--~~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~ 105 (111)
T cd04626 56 EKKVFNIVS--QDVFYVNEEDTID-EALDIMREKQIGRLPVVDD--NKLIGVVRT 105 (111)
T ss_pred cCcHHHHhc--CCcEEEcCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEh
Confidence 467889886 4677899999997 9999999999999999986 789999863
No 50
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=96.47 E-value=0.0038 Score=59.14 Aligned_cols=56 Identities=18% Similarity=0.386 Sum_probs=48.4
Q ss_pred HHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 195 IAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 195 i~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
..+. ++..+|+++|.| ++.+++.++++. ++++.+.+.+++++||++++ ++++|+++
T Consensus 328 ~~~~--l~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~Vvd~~-~~~~Givt 383 (454)
T TIGR01137 328 VFDV--LKNATVKDLHLP--APVTVHPTETVG-DAIEILREYGFDQLPVVTEA-GKVLGSVT 383 (454)
T ss_pred HHHH--hccCCHHHhCcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEE
Confidence 4455 788999999986 588899999997 99999999999999999764 78999986
No 51
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=96.45 E-value=0.004 Score=54.66 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=44.0
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
.+++++|+|.+ +...++.++++. ++++.+.+++..++||.+++ ++++|+||
T Consensus 218 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~l~GvI~ 268 (268)
T TIGR00393 218 LKSEVRDFMTL--GPKTFKLDALLL-EALEFLERRKITSLVVVDDH-NKVLGVLH 268 (268)
T ss_pred ccCcHHHhCCC--CCeEECCCCcHH-HHHHHHHHcCCcEEEEECCC-CeEEEEEC
Confidence 35779999965 467899999997 99999999999999999754 58999997
No 52
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.40 E-value=0.0065 Score=45.91 Aligned_cols=52 Identities=15% Similarity=0.373 Sum_probs=43.9
Q ss_pred cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
..+.++.++|. .+...++.++++. ++++.+.+.+..++||.+++ ++++|+++
T Consensus 64 ~~~~~v~~~~~--~~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit 115 (122)
T cd04803 64 ERDVPVAEVMK--TDVLTVTPDTPLR-EAAEIMVENKIGCLPVVDDK-GTLVGIIT 115 (122)
T ss_pred ccCcCHHHhhC--CCCeEeCCCCcHH-HHHHHHHHcCCCeEEEEcCC-CCEEEEEE
Confidence 35667888884 4677899999997 99999999999999999764 68999986
No 53
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=96.40 E-value=0.0073 Score=44.62 Aligned_cols=48 Identities=10% Similarity=0.194 Sum_probs=41.4
Q ss_pred ccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 204 ~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
.++.++|.+. ..+++.++++. ++++.+.+++.+++||.++ ++++|++.
T Consensus 50 ~~~~~~~~~~--~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~iGvit 97 (104)
T cd04594 50 GDVVDYIVRG--IPYVRLTSTAE-EAWEVMMKNKTRWCPVVDD--GKFKGIVT 97 (104)
T ss_pred cchhhhhhcC--CcEEcCCCCHH-HHHHHHHHcCcceEEEEEC--CEEEEEEE
Confidence 4588899754 67899999997 9999999999999999973 78999986
No 54
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=96.40 E-value=0.0025 Score=51.81 Aligned_cols=68 Identities=25% Similarity=0.425 Sum_probs=51.4
Q ss_pred CCCCCCHhH---HHHHHhhhcc--ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEE
Q 025095 183 KGGELTHDE---TTIIAGALEL--TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLI 255 (258)
Q Consensus 183 ~~g~l~~~E---~~mi~~i~~~--~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv 255 (258)
|.|.+++.= +.+++-..+- ...+++.+|+ ..++.+..+++++ ++++++.+.|||.+||.++ |.++|=+
T Consensus 39 E~G~vdPrlSt~k~Il~aL~e~e~~~ita~~iM~--spvv~v~pdDsi~-~vv~lM~~~g~SQlPVi~~--~k~VGsI 111 (187)
T COG3620 39 EAGKVDPRLSTVKRILEALEEAEKTRITAKTIMH--SPVVSVSPDDSIS-DVVNLMRDKGISQLPVIEE--DKVVGSI 111 (187)
T ss_pred hcCCCCccHHHHHHHHHHHHHhhcceEeHhhhcc--CCeeEECchhhHH-HHHHHHHHcCCccCceeeC--Ceeeeee
Confidence 347777642 2233222222 4567889998 6899999999997 9999999999999999987 8888865
No 55
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.38 E-value=0.0067 Score=45.99 Aligned_cols=40 Identities=13% Similarity=0.296 Sum_probs=35.9
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
++.+++.++++. ++.+.+.+++++++||+++ .++++|+++
T Consensus 2 ~~~~i~~~~~l~-~a~~~~~~~~~~~~pVv~~-~~~~~Giv~ 41 (120)
T cd04641 2 NIATARPDTPLI-DVLDMLVERRVSALPIVDE-NGKVVDVYS 41 (120)
T ss_pred CcEEEcCCCCHH-HHHHHHHHcCCCeeeEECC-CCeEEEEEe
Confidence 578899999997 9999999999999999976 578999986
No 56
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.36 E-value=0.0062 Score=45.22 Aligned_cols=50 Identities=22% Similarity=0.400 Sum_probs=43.0
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+..+.++|. .++..++.++++. ++.+.+.+++..++||.+++ ++++|++.
T Consensus 55 ~~~v~~~~~--~~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it 104 (111)
T cd04639 55 DAPVRGVMR--RDFPTVSPSATLD-AVLRLMQQGGAPAVPVVDGS-GRLVGLVT 104 (111)
T ss_pred CCcHHHHhc--CCCcEECCCCcHH-HHHHHHHhcCCceeeEEcCC-CCEEEEEE
Confidence 457889985 4678899999997 99999999999999999764 78999986
No 57
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.36 E-value=0.0058 Score=46.43 Aligned_cols=51 Identities=20% Similarity=0.412 Sum_probs=44.1
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
.+.+++++|.+ ++..++.++++. ++++.+.+.+.+++||.+++ ++++|+|+
T Consensus 68 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~~-~~~~Gvit 118 (125)
T cd04631 68 INEPVRSIMTR--NVITITPDDSIK-DAAELMLEKRVGGLPVVDDD-GKLVGIVT 118 (125)
T ss_pred hhcCHHHHhcC--CceEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CcEEEEEE
Confidence 45678899864 688999999997 89999999999999999765 78999986
No 58
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.36 E-value=0.0076 Score=44.59 Aligned_cols=40 Identities=18% Similarity=0.173 Sum_probs=36.3
Q ss_pred EEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 216 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 216 v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+.+++.++++. ++++.+.+++..|+||.+++.++++|++.
T Consensus 52 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~~~~~~giit 91 (98)
T cd04618 52 LVSIHPERSLF-DAALLLLKNKIHRLPVIDPSTGTGLYILT 91 (98)
T ss_pred eEEeCCCCcHH-HHHHHHHHCCCCEeeEEECCCCCceEEee
Confidence 77899999997 99999999999999999876578999985
No 59
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.34 E-value=0.0081 Score=45.76 Aligned_cols=46 Identities=26% Similarity=0.325 Sum_probs=39.1
Q ss_pred cccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 207 SDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 207 ~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
.++|. .++.+++.++++. ++++.+.+++.+++||.+++ ++++|++.
T Consensus 71 ~~~~~--~~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~vGiit 116 (123)
T cd04627 71 LTIGT--SDVISINGDQPLI-DALHLMHNEGISSVAVVDNQ-GNLIGNIS 116 (123)
T ss_pred cccCc--CCceEeCCCCCHH-HHHHHHHHcCCceEEEECCC-CcEEEEEe
Confidence 44564 4678899999997 99999999999999999765 68999986
No 60
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.29 E-value=0.0058 Score=58.85 Aligned_cols=53 Identities=17% Similarity=0.345 Sum_probs=47.7
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
.+.+++|+|+|+.++++++.+++++ |+++.+.+++..++||.+++ ++++|++.
T Consensus 157 ~~~~V~diMt~~~~lvtv~~~~sl~-eAl~lm~e~~i~~LPVVd~~-g~liGIIT 209 (495)
T PTZ00314 157 KSTPVSEVMTPREKLVVGNTPISLE-EANEVLRESRKGKLPIVNDN-GELVALVS 209 (495)
T ss_pred CCCCHHHhhCCcCCceEeCCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEE
Confidence 3578999999999999999999997 99999999999999999764 67999986
No 61
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=96.28 E-value=0.0058 Score=55.41 Aligned_cols=53 Identities=19% Similarity=0.116 Sum_probs=45.8
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
...+|+|+|++..++..++.++++. ++.+.+.+++++.+||.++ .+.++|++.
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~-~a~~~~~~~~~~~~vVvd~-~g~lvGivt 252 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLR-DALLEITRKNLGMTVICDD-NMKIEGIFT 252 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHhcCCCeEEEEcC-CCcEEEEEe
Confidence 6678999999877999999999997 9999999999888788764 368999986
No 62
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=96.27 E-value=0.0086 Score=44.88 Aligned_cols=50 Identities=16% Similarity=0.387 Sum_probs=42.4
Q ss_pred ccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCC-CcEEEEEE
Q 025095 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEP-TNIIGLIL 256 (258)
Q Consensus 204 ~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~-D~IvGiv~ 256 (258)
.+++++|.+ +...++.++++. ++++.+.+++.+++||.+++. ++++|++.
T Consensus 58 ~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit 108 (115)
T cd04593 58 SAVDEVATP--PLLTVHPDEPLA-HALDRMASRGLRQLPVVDRGNPGQVLGLLT 108 (115)
T ss_pred ccHHHhccC--CceEECCCCCHH-HHHHHHHHcCCceeeEEeCCCCCeEEEEEE
Confidence 447888864 677899999997 999999999999999997753 67999986
No 63
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.22 E-value=0.0086 Score=44.43 Aligned_cols=51 Identities=16% Similarity=0.397 Sum_probs=43.7
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
.+..++++|.+ +..+++.+++++ ++++.+.+++..++||.+++ ++++|++.
T Consensus 51 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it 101 (108)
T cd04596 51 PDTTIEKVMTK--NPITVNPKTSVA-SVAHMMIWEGIEMLPVVDDN-KKLLGIIS 101 (108)
T ss_pred ccccHHHHhcC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CCEEEEEE
Confidence 45679999975 577899999997 99999999999999999754 68999986
No 64
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.21 E-value=0.01 Score=44.38 Aligned_cols=51 Identities=16% Similarity=0.327 Sum_probs=41.3
Q ss_pred ccccccccccccceEEEEeCC--CCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 202 TEKTASDAMTPIAETFAIDIN--AKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 202 ~~~~v~eiM~PR~~v~~l~~~--~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
++.+++++|.+ +...++.+ +++. ++++.+.+++.+++||.+++ ++++|++.
T Consensus 56 ~~~~i~~~~~~--~~~~v~~~~~~~l~-~a~~~~~~~~~~~~pVvd~~-~~~~Gvit 108 (115)
T cd04620 56 SDLPIGEVMTQ--PVVTLQESEIQDIF-TALSLFRQHQIRHLPVLDDQ-GQLIGLVT 108 (115)
T ss_pred cccCHHHhcCC--CcEEEecccccCHH-HHHHHHHHhCCceEEEEcCC-CCEEEEEE
Confidence 35678899965 56667665 6776 89999999999999999764 78999986
No 65
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.19 E-value=0.0064 Score=47.18 Aligned_cols=51 Identities=24% Similarity=0.384 Sum_probs=44.5
Q ss_pred cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
..+.+++++|.+ +...++.++++. ++++.+.+.+.+++||.+ .+.++|++.
T Consensus 78 ~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~l~Vvd--~g~~~Gvit 128 (135)
T cd04586 78 SHGRKVADVMTR--PVVTVGEDTPLA-EVAELMEEHRIKRVPVVR--GGRLVGIVS 128 (135)
T ss_pred hcCCCHHHHhCC--CceEeCCCCcHH-HHHHHHHHcCCCccCEec--CCEEEEEEE
Confidence 466789999965 578899999997 999999999999999998 378999986
No 66
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.17 E-value=0.0075 Score=44.92 Aligned_cols=49 Identities=27% Similarity=0.422 Sum_probs=42.9
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+..+.++|.+ +...++.++++. ++++.+.+.+.+++||.++ +.++|++.
T Consensus 59 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvit 107 (114)
T cd04629 59 VATVRDIMTT--EVLTVSPDDSIV-DLAQLMLKAKPKRYPVVDD--GKLVGQIS 107 (114)
T ss_pred CccHHHHhcc--CceEECCCCcHH-HHHHHHHHhCCCccCEEEC--CEEEEEEE
Confidence 5678899975 567799999997 9999999999999999986 78999986
No 67
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.12 E-value=0.0099 Score=44.89 Aligned_cols=51 Identities=20% Similarity=0.451 Sum_probs=43.5
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
.+.++.++|. .+...++.++++. ++++.+.+++.+++||.+++ +.++|++.
T Consensus 65 ~~~~~~~~~~--~~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvit 115 (122)
T cd04635 65 ASPTVEKIMS--TPVYSVTPDDSIA-TAVELMLEHDIGRLPVVNEK-DQLVGIVD 115 (122)
T ss_pred ccCcHHHHhc--CCCeeECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CcEEEEEE
Confidence 4567888985 4578899999997 99999999999999999765 78999986
No 68
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=96.12 E-value=0.01 Score=44.08 Aligned_cols=49 Identities=29% Similarity=0.476 Sum_probs=42.7
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+.++.++|.+ ++..++.++++. ++++.+.+++.+++||.++ +.++|++.
T Consensus 56 ~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Giit 104 (111)
T cd04800 56 DTPVSEVMTA--PPITIPPDATVF-EALLLMLERGIHHLPVVDD--GRLVGVIS 104 (111)
T ss_pred cCCHHHHhCC--CCeEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEE
Confidence 4678888854 678899999997 9999999999999999986 78999986
No 69
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.05 E-value=0.0099 Score=46.90 Aligned_cols=51 Identities=20% Similarity=0.408 Sum_probs=44.2
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025095 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV 257 (258)
Q Consensus 202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~ 257 (258)
.+..+.++|.+ +..+++.+++++ ++++.+.+.+++++||.++ ++++|++..
T Consensus 87 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~ 137 (143)
T cd04634 87 GKMKVRDIMTK--KVITISPDASIE-DAAELMVRHKIKRLPVVED--GRLVGIVTR 137 (143)
T ss_pred hcCCHHHHcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEH
Confidence 56778999966 577899999997 8999999999999999986 789999863
No 70
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=96.05 E-value=0.013 Score=43.21 Aligned_cols=51 Identities=16% Similarity=0.341 Sum_probs=43.3
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
.+..+.++|.+ +...++.++++. ++++.+.+.+..++||.+++ ++++|++.
T Consensus 54 ~~~~v~~~~~~--~~~~~~~~~~l~-~~l~~~~~~~~~~~~Vv~~~-~~~~Gvi~ 104 (111)
T cd04611 54 LQTPVGEVMSS--PLLTVPADTSLY-DARQLMREHGIRHLVVVDDD-GELLGLLS 104 (111)
T ss_pred CCcCHHHhcCC--CceEECCCCCHH-HHHHHHHHcCCeEEEEECCC-CcEEEEEE
Confidence 45778899865 677899999997 89999999999999999764 67999986
No 71
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.04 E-value=0.013 Score=43.49 Aligned_cols=50 Identities=22% Similarity=0.399 Sum_probs=43.2
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+.+++++|.| +...++.++++. ++++.+.+.+..++||.+++ ++++|++.
T Consensus 52 ~~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit 101 (109)
T cd04606 52 DTPVSDIMDT--DVISVSADDDQE-EVARLFEKYDLLALPVVDEE-GRLVGIIT 101 (109)
T ss_pred cchHHHHhCC--CCeEEcCCCCHH-HHHHHHHHcCCceeeeECCC-CcEEEEEE
Confidence 5679999965 478899999997 99999999999999999764 78999986
No 72
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=96.01 E-value=0.0066 Score=54.82 Aligned_cols=52 Identities=13% Similarity=0.122 Sum_probs=45.9
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
..+|+++|.+..++.+++.++++. ++.+.+.+++.+.+||.+++ ++.+|++.
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~-~a~~~~~~~~~~~~~Vvd~~-g~~iG~vt 247 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVM-DAMLELSRTGLGLVAVCDAQ-QQVQGVFT 247 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEec
Confidence 479999999866789999999997 89999999999999999764 78999986
No 73
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=96.01 E-value=0.013 Score=44.01 Aligned_cols=52 Identities=19% Similarity=0.380 Sum_probs=42.4
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+..++++|.+....+..+.++++. ++++.+.+++..++||.+++ +.++|++.
T Consensus 56 ~~~v~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~pVv~~~-~~~~Gvit 107 (114)
T cd04602 56 ETPLSEVMTPREVLVVAPTGITLE-EANEILRESKKGKLPIVNDD-GELVALVT 107 (114)
T ss_pred CCCHHHhcCCCceEEECCCCCCHH-HHHHHHHhcCCCceeEECCC-CeEEEEEE
Confidence 356889997766655555589986 99999999999999999754 57999986
No 74
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=95.94 E-value=0.015 Score=43.14 Aligned_cols=50 Identities=22% Similarity=0.431 Sum_probs=43.3
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
.+.+++++|.+ +...++.++++. ++++.+.+.+.+++||.+ .++++|++.
T Consensus 54 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~--~~~~~Gvvt 103 (110)
T cd04595 54 GHAPVKDYMST--DVVTVPPDTPLS-EVQELMVEHDIGRVPVVE--DGRLVGIVT 103 (110)
T ss_pred ccCcHHHHhcC--CCEEECCCCcHH-HHHHHHHHcCCCeeEEEe--CCEEEEEEE
Confidence 46778899975 577899999997 999999999999999998 368999986
No 75
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=95.91 E-value=0.014 Score=44.20 Aligned_cols=52 Identities=27% Similarity=0.522 Sum_probs=44.5
Q ss_pred cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
..+.++.++|.+ +..+++.++++. ++++.+.+.+.+++||.++ .++++|+++
T Consensus 66 ~~~~~i~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~g~~~Gvit 117 (124)
T cd04600 66 DKPETVGDIMSP--PVVTVRPDTPIA-ELVPLLADGGHHHVPVVDE-DRRLVGIVT 117 (124)
T ss_pred cccccHHHhccC--CCeeeCCCCcHH-HHHHHHHhcCCCceeEEcC-CCCEEEEEE
Confidence 356678999965 677899999997 9999999999999999985 378999986
No 76
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=95.89 E-value=0.017 Score=42.56 Aligned_cols=49 Identities=33% Similarity=0.629 Sum_probs=41.9
Q ss_pred ccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 204 ~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
..+.++|.+ ++..++.++++. ++.+.+.+.+.+++||.+++ ++++|++.
T Consensus 54 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~vv~~~-g~~~Gvit 102 (109)
T cd04583 54 KSLEDIMLE--DVFTVQPDASLR-DVLGLVLKRGPKYVPVVDED-GKLVGLIT 102 (109)
T ss_pred CcHhHhhcC--CceEECCCCcHH-HHHHHHHHcCCceeeEECCC-CeEEEEEe
Confidence 468889975 567899999997 99999999999999999764 58999986
No 77
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=95.88 E-value=0.017 Score=42.68 Aligned_cols=41 Identities=22% Similarity=0.466 Sum_probs=35.7
Q ss_pred ceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 214 ~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
.++..++.++++. ++++.+.+++++++||.+++ ++++|+++
T Consensus 2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~ 42 (110)
T cd04605 2 RPVVTISEDASIK-EAAKLMIEENINHLPVVDED-GRLVGIVT 42 (110)
T ss_pred CCCEEECCCCCHH-HHHHHHHhCCCceEEEECCC-CcEEEEEe
Confidence 3567789999997 99999999999999999764 89999986
No 78
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=95.82 E-value=0.018 Score=43.54 Aligned_cols=40 Identities=15% Similarity=0.372 Sum_probs=35.4
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
++.+++.++++. ++.+.+.+++++++||++++ ++++|+++
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~ 42 (124)
T cd04600 3 DVVTVTPDTSLE-EAWALLRRHRIKALPVVDGD-RRLVGIVT 42 (124)
T ss_pred CcEEeCCCCCHH-HHHHHHHHcCCceeeEECCC-CCEEEEEE
Confidence 567789999997 99999999999999999765 78999986
No 79
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=95.78 E-value=0.023 Score=51.29 Aligned_cols=51 Identities=16% Similarity=0.267 Sum_probs=44.0
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
.+.+++++|++ +...++.++++. ++++.+.+++..++||.+++ ++++|++.
T Consensus 261 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~lvGvIt 311 (321)
T PRK11543 261 LTTPVNEAMTR--GGTTLQAQSRAI-DAKEILMKRKITAAPVVDEN-GKLTGAIN 311 (321)
T ss_pred cCCcHHHhcCC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEE
Confidence 35679999986 677899999997 99999999999999999764 48999985
No 80
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=95.74 E-value=0.014 Score=56.77 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=46.0
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
....|+++|+ +.+..+++.+++++ ++.+.+.+++++++||.+++ ++++|++.
T Consensus 244 ~~~~V~~iM~-~~~~~~~~~~~~~~-~~~~~m~~~~~~~~PVvd~~-g~lvGiit 295 (546)
T PRK14869 244 QSIPVSYIMT-TEDLVTFSKDDYLE-DVKEVMLKSRYRSYPVVDED-GKVVGVIS 295 (546)
T ss_pred cCCCHHHhcc-CCCcEEECCCCcHH-HHHHHHHhcCCCceEEEcCC-CCEEEEEE
Confidence 3678999998 35789999999997 99999999999999999864 78999986
No 81
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.73 E-value=0.021 Score=43.62 Aligned_cols=42 Identities=24% Similarity=0.245 Sum_probs=37.1
Q ss_pred cceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 213 IAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 213 R~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
..+..+++.++++. ++++.+.+++.+++||.+++ ++++|++.
T Consensus 78 ~~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~~-~~~~Giit 119 (126)
T cd04642 78 SRPLITCTPSSTLK-EVITKLVANKVHRVWVVDEE-GKPIGVIT 119 (126)
T ss_pred cCCCeEECCCCcHH-HHHHHHHHhCCcEEEEECCC-CCEEEEEE
Confidence 45678899999997 99999999999999999865 78999986
No 82
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.73 E-value=0.023 Score=42.96 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=36.0
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
++.+++.++++. ++++.+.+++.+++||.+++ ++++|++.
T Consensus 74 ~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-~~~~Givt 113 (120)
T cd04641 74 GVRTCSPDDCLR-TIFDLIVKARVHRLVVVDEN-KRVEGIIS 113 (120)
T ss_pred CCeEEcCCCcHH-HHHHHHHhcCccEEEEECCC-CCEEEEEE
Confidence 567899999997 99999999999999999865 78999986
No 83
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.73 E-value=0.02 Score=43.20 Aligned_cols=40 Identities=13% Similarity=0.395 Sum_probs=35.4
Q ss_pred ceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 214 ~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+++..++.++++. ++.+.+.+.+++++||+++ ++.+|+++
T Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~ 40 (122)
T cd04637 1 TRVVTVEMDDRLE-EVREIFEKHKFHHLLVVED--NELVGVIS 40 (122)
T ss_pred CCceEeCCCCCHH-HHHHHHHhCCCCEEEEEeC--CeEEEEEE
Confidence 3567889999997 8999999999999999986 78999986
No 84
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.72 E-value=0.017 Score=43.74 Aligned_cols=41 Identities=20% Similarity=0.447 Sum_probs=36.2
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
++..++.++++. ++++.+.+++++++||++++.+.++|+++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~d~~~~~~~G~v~ 42 (125)
T cd04631 2 DVVTVPPTTPIM-EAAKIMVRNGFRRLPVVDEGTGKLVGIIT 42 (125)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCcccceeEeCCCCEEEEEEE
Confidence 567789999997 99999999999999999876578999986
No 85
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.71 E-value=0.02 Score=43.58 Aligned_cols=41 Identities=24% Similarity=0.342 Sum_probs=35.7
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
++..++.++++. ++++.+.+.+++++||++++.++++|+++
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~~~~~~Giv~ 42 (123)
T cd04627 2 PFIPVPSTASLF-QAIEILGSGGIHRVAVTEEESGEVIGILS 42 (123)
T ss_pred CceecCCCCCHH-HHHHHHhhCCcceEEEEeCCCCcEEEEEE
Confidence 467789999997 89999999999999999875578999987
No 86
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=95.70 E-value=0.018 Score=42.62 Aligned_cols=41 Identities=20% Similarity=0.489 Sum_probs=35.8
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV 257 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~ 257 (258)
++..++.+++++ ++++.+.+.+++++||++++ ++.+|+++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~ 42 (114)
T cd04613 2 DVVTIPEDTPLN-ELLDVIAHSPENNFPVVDDD-GRLVGIVSL 42 (114)
T ss_pred CceeeCCCCcHH-HHHHHHHhCCCcceeEECCC-CCEEEEEEH
Confidence 467789999997 99999999999999999875 789999873
No 87
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=95.70 E-value=0.0082 Score=52.44 Aligned_cols=57 Identities=23% Similarity=0.422 Sum_probs=51.1
Q ss_pred HHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 195 IAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 195 i~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+.++....+.+|.++|++ +..+++.|+|+. |+.+.+.+.|..-.||.++ |+++|++.
T Consensus 163 i~~m~siPk~~V~~~~s~--~~i~v~~d~tl~-eaak~f~~~~i~GaPVvd~--dk~vGiit 219 (294)
T COG2524 163 ISKMVSIPKEKVKNLMSK--KLITVRPDDTLR-EAAKLFYEKGIRGAPVVDD--DKIVGIIT 219 (294)
T ss_pred EeeeeecCcchhhhhccC--CceEecCCccHH-HHHHHHHHcCccCCceecC--CceEEEEE
Confidence 356678899999999996 789999999997 9999999999999999987 59999985
No 88
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.66 E-value=0.017 Score=43.59 Aligned_cols=50 Identities=30% Similarity=0.488 Sum_probs=42.4
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+..++++|. .+...++.+++++ ++++.+.+++.+++||.+++ ++++|++.
T Consensus 66 ~~~~~~~~~--~~~~~v~~~~~l~-~~~~~~~~~~~~~~~vv~~~-~~~~Gvit 115 (122)
T cd04637 66 NRRAHQIMT--RDPITVSPDTPVD-EASKLLLENSISCLPVVDEN-GQLIGIIT 115 (122)
T ss_pred HhHHHHhhc--CCCeeeCCCCcHH-HHHHHHHHcCCCeEeEECCC-CCEEEEEE
Confidence 346888885 4688899999997 99999999999999999754 78999986
No 89
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.65 E-value=0.019 Score=43.89 Aligned_cols=41 Identities=24% Similarity=0.395 Sum_probs=36.3
Q ss_pred ceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 214 ~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+++..++.++++. ++++.+.+++++++||.+++ +.++|+++
T Consensus 1 ~~~~~v~~~~~~~-~a~~~~~~~~~~~i~V~d~~-~~~~Giv~ 41 (126)
T cd04642 1 SKVVSIDSDERVL-DAFKLMRKNNISGLPVVDEK-GKLIGNIS 41 (126)
T ss_pred CCeEEECCCccHH-HHHHHHHHhCCCcccEECCC-CcEEEEEE
Confidence 3678899999997 99999999999999999865 88999986
No 90
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.65 E-value=0.028 Score=42.05 Aligned_cols=42 Identities=24% Similarity=0.333 Sum_probs=36.5
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV 257 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~ 257 (258)
++..++.++++. ++++.+.+.+++.+||++++.++++|+++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~ 43 (114)
T cd04630 2 NVVTIDGLATVA-EALQLMKEHGVSSLVVEKRRESDAYGIVTM 43 (114)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCEEEEEECCCCcEEEEEeh
Confidence 577899999997 999999999999999998755789999863
No 91
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.65 E-value=0.019 Score=43.33 Aligned_cols=40 Identities=20% Similarity=0.392 Sum_probs=35.1
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
++.+++.++++. ++.+.+.+.+++++||++++ +.++|+++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~ 41 (122)
T cd04803 2 PVVTLSEDDSLA-DAEELMREHRIRHLPVVNED-GKLVGLLT 41 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCcccccEECCC-CCEEEEEE
Confidence 567789999997 99999999999999999764 78999987
No 92
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=95.64 E-value=0.021 Score=42.28 Aligned_cols=41 Identities=27% Similarity=0.451 Sum_probs=36.1
Q ss_pred ceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 214 ~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
.++.+++.+++++ ++.+.+.+++++++||+++ .+.++|+++
T Consensus 2 ~~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~-~~~~~G~v~ 42 (108)
T cd04596 2 EDTGYLTTTDTVK-DWHELNKETGHSRFPVVDE-KNKVVGIVT 42 (108)
T ss_pred CccEEeCCCCCHH-HHHHHHHHcCCCceeEECC-CCeEEEEec
Confidence 4678999999997 9999999999999999975 478999986
No 93
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.64 E-value=0.023 Score=42.38 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=35.3
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
++.+++.++++. ++++.+.+.+++++||+++ .++++|+++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~-~~~~~Giv~ 41 (116)
T cd04643 2 EVAYVQDTNTLR-HALLVLTKHGYSAIPVLDK-EGKYVGTIS 41 (116)
T ss_pred CcEEECCCCcHH-HHHHHHHHCCCceeeeECC-CCcEEEEEe
Confidence 678899999997 9999999999999999975 367999986
No 94
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.64 E-value=0.023 Score=42.12 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=34.7
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
++..++.+++++ ++++.+.+++++++||++++ +..+|+++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~ 41 (111)
T cd04626 2 DFPTIDEDASIR-EALHEMLKYNTNEIIVKDNE-EKLKGVVT 41 (111)
T ss_pred CceEECCCccHH-HHHHHHHHhCCCeEEEEcCC-CCEEEEEe
Confidence 567789999997 89999999999999999763 67899986
No 95
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=95.59 E-value=0.013 Score=57.46 Aligned_cols=52 Identities=13% Similarity=0.212 Sum_probs=44.4
Q ss_pred cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
++..+|+|+|+|. ...++.+++++ |+.+.+.+++++++||.|++ ++.+|++.
T Consensus 444 L~~~~V~dim~~~--~~~v~~~~tl~-ea~~~l~~~~~~~~~VvD~~-g~lvGiVt 495 (574)
T PRK01862 444 LRTTQMRELIQPA--QTVVPPTASVA-DMTRVFLEYPVKYLYVVDDD-GRFRGAVA 495 (574)
T ss_pred HhhCcHHHHhcCC--CceeCCCCCHH-HHHHHHHhCCCceEEEEcCC-CeEEEEEE
Confidence 5678999999874 46689999997 99999999999999999763 67999986
No 96
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.57 E-value=0.02 Score=43.75 Aligned_cols=53 Identities=21% Similarity=0.362 Sum_probs=44.2
Q ss_pred cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeC-CCCcEEEEEE
Q 025095 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYE-EPTNIIGLIL 256 (258)
Q Consensus 201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~-~~D~IvGiv~ 256 (258)
+.+.+++++|.+ ++.+++.++++. ++++.+.++++..+||.++ +.+.++|++.
T Consensus 68 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit 121 (128)
T cd04632 68 MLDLPVYDAMSS--PVITASPNDSVR-DAVDRMLENDDSSVVVVTPDDDTKVVGILT 121 (128)
T ss_pred hccCcHHHHhcC--CCceECCCCcHH-HHHHHHHhCCCCeEeEeccCCCCcEEEEEE
Confidence 345679999974 688899999997 9999999999999999964 4467999985
No 97
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=95.56 E-value=0.031 Score=41.37 Aligned_cols=42 Identities=43% Similarity=0.776 Sum_probs=36.9
Q ss_pred ceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 214 ~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+++..++.+++++ ++.+.+.+.+++.+||.+++.+..+|++.
T Consensus 1 ~~~~~i~~~~~i~-~a~~~~~~~~~~~~~v~~~~~~~~~G~v~ 42 (111)
T cd04590 1 TDIVALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVH 42 (111)
T ss_pred CceEEEcCCCCHH-HHHHHHhhCCCceEEEECCCCceEEEEEE
Confidence 4788899999997 99999999999999999875478999986
No 98
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.55 E-value=0.028 Score=41.71 Aligned_cols=40 Identities=20% Similarity=0.319 Sum_probs=34.6
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+...++.+++++ ++.+.+.+.+++++||++++ +..+|+++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~ 41 (112)
T cd04624 2 PVVTVDPDTSIR-EAAKLMAEENVGSVVVVDPD-ERPIGIVT 41 (112)
T ss_pred CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEee
Confidence 345688999997 89999999999999999875 78999987
No 99
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=95.54 E-value=0.028 Score=41.62 Aligned_cols=40 Identities=15% Similarity=0.235 Sum_probs=35.2
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV 257 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~ 257 (258)
++..++.+++++ ++.+.+.+.+++++||.++ +.++|+++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~~~--~~~~G~v~~ 41 (111)
T cd04800 2 PPVTCSPDTTIR-EAARLMTEHRVSSLLVVDD--GRLVGIVTD 41 (111)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEh
Confidence 567789999997 8999999999999999986 899999873
No 100
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=95.52 E-value=0.023 Score=42.31 Aligned_cols=43 Identities=19% Similarity=0.376 Sum_probs=37.2
Q ss_pred cceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCC--CCcEEEEEE
Q 025095 213 IAETFAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLIL 256 (258)
Q Consensus 213 R~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~--~D~IvGiv~ 256 (258)
+++...++.+++++ ++.+.+.+.+++++||.++. .+..+|+++
T Consensus 1 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~ 45 (105)
T cd04591 1 VPLVVLLPEGMTVE-DLESLLSTTSHNGFPVVDSTEESPRLVGYIL 45 (105)
T ss_pred CCceEEecccccHH-HHHHHHHhCCCCCcceEcCCCCCCEEEEEEe
Confidence 46788899999997 89999999999999999764 477999986
No 101
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=95.51 E-value=0.025 Score=55.45 Aligned_cols=52 Identities=21% Similarity=0.303 Sum_probs=44.3
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCC-CcEEEEEE
Q 025095 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEP-TNIIGLIL 256 (258)
Q Consensus 202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~-D~IvGiv~ 256 (258)
++.+++|+|.+ +...++.|++++ ++++.+.+++.+++||.+++. ++++|+++
T Consensus 510 ~~~~v~dim~~--~~~~v~~d~~L~-~al~~m~~~~~~~lpVVd~~~~~~liGvIt 562 (574)
T PRK01862 510 TDKTAADYAHT--PFPLLTPDMPLG-DALEHFMAFQGERLPVVESEASPTLAGVVY 562 (574)
T ss_pred ccchHHHhccC--CCeeECCCCCHH-HHHHHHHhcCCCeeeeEeCCCCCeEEEEEE
Confidence 34679999975 567899999997 999999999999999998764 46999986
No 102
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.40 E-value=0.025 Score=41.86 Aligned_cols=40 Identities=18% Similarity=0.335 Sum_probs=34.7
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+...++.+++++ ++.+.+.+.+++++||++++ +..+|+++
T Consensus 2 ~~~~v~~~~~i~-e~~~~~~~~~~~~~~V~~~~-~~~~G~v~ 41 (111)
T cd04639 2 HFETLSPADTLD-DAADALLATTQHEFPVVDGD-GHLVGLLT 41 (111)
T ss_pred CceEcCCCCcHH-HHHHHHHHcCCCcceEECCC-CcEEEEee
Confidence 567789999997 99999988999999999864 68999986
No 103
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=95.39 E-value=0.033 Score=40.79 Aligned_cols=39 Identities=13% Similarity=0.273 Sum_probs=35.2
Q ss_pred EEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 216 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 216 v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+..++.++++. ++++.+.+++..++||.+++ ++++|++.
T Consensus 51 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~~-~~~~Giit 89 (96)
T cd04614 51 VVTATKRTTVS-ECAQKMKRNRIEQIPIINGN-DKLIGLLR 89 (96)
T ss_pred cEEecCCCCHH-HHHHHHHHhCCCeeeEECCC-CcEEEEEE
Confidence 78899999997 99999999999999999864 78999985
No 104
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=95.37 E-value=0.04 Score=40.67 Aligned_cols=49 Identities=24% Similarity=0.344 Sum_probs=41.2
Q ss_pred ccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 204 ~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
..++++|.+ +...++.+++++ ++++.+.+++..++||.+++ ++++|++.
T Consensus 55 ~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~v~ 103 (110)
T cd04605 55 KSVEDIMTR--NVITATPDEPID-VAARKMERHNISALPVVDAE-NRVIGIIT 103 (110)
T ss_pred cCHHHhcCC--CCeEECCCCcHH-HHHHHHHHhCCCEEeEECCC-CcEEEEEE
Confidence 348888864 567789999997 99999999999999999764 78999986
No 105
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=95.37 E-value=0.027 Score=42.29 Aligned_cols=40 Identities=23% Similarity=0.439 Sum_probs=35.2
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
++..++.+++++ ++.+.+.+.+++++||++++ ++++|+++
T Consensus 2 ~~~~~~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~ 41 (121)
T cd04584 2 DVVTITPTTTIA-EALELMREHKIRHLPVVDEE-GRLVGIVT 41 (121)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCcccEECCC-CcEEEEEE
Confidence 456788999997 99999999999999999875 78999987
No 106
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=95.35 E-value=0.036 Score=40.24 Aligned_cols=40 Identities=23% Similarity=0.537 Sum_probs=35.2
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
++..++.+++++ ++.+.+.+.+++++||++++ ++++|++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~ 41 (113)
T cd02205 2 DVVTVSPDDTVA-EALRLMLEHGISGLPVVDDD-GRLVGIVT 41 (113)
T ss_pred CceEecCCCCHH-HHHHHHHhcCCceEEEECCC-CCEEEEEe
Confidence 467789999997 99999999999999999875 79999986
No 107
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=95.35 E-value=0.015 Score=45.79 Aligned_cols=50 Identities=16% Similarity=0.139 Sum_probs=40.0
Q ss_pred hccccccccccccc-------cceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCC
Q 025095 199 LELTEKTASDAMTP-------IAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPT 249 (258)
Q Consensus 199 ~~~~~~~v~eiM~P-------R~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D 249 (258)
+.-.+..+.++|+| +.++.+++.++++. ++++.+.+++.+++||.+++.|
T Consensus 64 ~~~~~~~v~~i~~~~~~~~~~~~~~~~v~~~~~l~-ea~~~m~~~~~~~lPVvd~~~~ 120 (133)
T cd04592 64 KQTNTCLVSSVCTKGISYGGQECGLWTCTPDTDLT-TAKKLMEAKGVKQLPVVKRGVD 120 (133)
T ss_pred cccccccHHHHhhhhhhhcccCCCCEEECCCCCHH-HHHHHHHHcCCCcCCEecCCcC
Confidence 33444556678774 46788999999997 9999999999999999987654
No 108
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=95.34 E-value=0.022 Score=54.16 Aligned_cols=51 Identities=25% Similarity=0.345 Sum_probs=44.5
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
++.+++++|+| +..+++.+++.+ ++++.+.++++..+||.+++ ++++|++.
T Consensus 193 ~~~~v~~im~~--~~~~v~~~~~~~-eal~~m~~~~~~~lpVVD~~-g~lvGiIt 243 (449)
T TIGR00400 193 PEEILSSIMRS--SVFSIVGVNDQE-EVARLIQKYDFLAVPVVDNE-GRLVGIVT 243 (449)
T ss_pred CCCcHHHHhCC--CCeeECCCCCHH-HHHHHHHHcCCCEEeEEcCC-CeEEEEEE
Confidence 56789999987 577899999997 99999999999999999754 67999986
No 109
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=95.30 E-value=0.03 Score=41.44 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=39.5
Q ss_pred ccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 204 ~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
..++++|. +...++.++++. ++++.+.+++.+++||.+++ ++++|+++
T Consensus 57 ~~~~~~~~---~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit 104 (111)
T cd04590 57 LDLRDLLR---PPLFVPESTPLD-DLLEEMRKERSHMAIVVDEY-GGTAGLVT 104 (111)
T ss_pred CCHHHHhc---CCeecCCCCcHH-HHHHHHHhcCCcEEEEEECC-CCEEEEeE
Confidence 35666664 357789999997 99999999999999999763 67999986
No 110
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=95.30 E-value=0.021 Score=55.54 Aligned_cols=50 Identities=24% Similarity=0.365 Sum_probs=44.5
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+.+|+|+|.+ +..+++.++++. ++++.+.+++++++||.+++ ++.+|++.
T Consensus 67 ~~~V~dim~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~l~Givt 116 (546)
T PRK14869 67 KPQVRDLEID--KPVTVSPDTSLK-EAWNLMDENNVKTLPVVDEE-GKLLGLVS 116 (546)
T ss_pred CCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEE
Confidence 3689999985 788899999997 99999999999999999864 78999986
No 111
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.30 E-value=0.036 Score=41.06 Aligned_cols=50 Identities=18% Similarity=0.284 Sum_probs=42.2
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+..++++|.+ +...++.++++. ++++.+.+++.+++||.+++ +.++|++.
T Consensus 56 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gilt 105 (112)
T cd04624 56 DTPVSEIMTR--DLVTVDPDEPVA-EAAKLMRKNNIRHHLVVDKG-GELVGVIS 105 (112)
T ss_pred ccCHHHhccC--CCEEECCCCcHH-HHHHHHHHcCccEEEEEcCC-CcEEEEEE
Confidence 4568888864 577899999997 89999999999999999865 67999986
No 112
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.29 E-value=0.038 Score=42.21 Aligned_cols=40 Identities=20% Similarity=0.485 Sum_probs=35.5
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
++..++.++++. ++++.+.+.+++.+||++++ +.++|++.
T Consensus 2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it 41 (128)
T cd04632 2 DVITVREDDSVG-KAINVLREHGISRLPVVDDN-GKLTGIVT 41 (128)
T ss_pred CceEeCCCCCHH-HHHHHHHHcCCCEEEEECCC-CcEEEEEE
Confidence 567789999997 99999999999999999875 78999986
No 113
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=95.25 E-value=0.038 Score=40.72 Aligned_cols=41 Identities=15% Similarity=0.201 Sum_probs=35.6
Q ss_pred ceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025095 214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV 257 (258)
Q Consensus 214 ~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~ 257 (258)
+++.+++.+++++ ++.+.+.+.+++++||+++ ++.+|+++.
T Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~ 41 (111)
T cd04611 1 TQILTCPPDTSLA-EAASRMRERRISSIVVVDD--GRPLGIVTE 41 (111)
T ss_pred CCceEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEeH
Confidence 3567889999997 9999999999999999987 889999863
No 114
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.24 E-value=0.025 Score=42.14 Aligned_cols=49 Identities=22% Similarity=0.420 Sum_probs=40.1
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
.++++.++|.| +..+++.++++. ++++.+.+.+ .+||.+++ ++++|++.
T Consensus 61 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~--~~~Vv~~~-~~~~Gvit 109 (116)
T cd04643 61 VDLKVIDVMNT--DVPVIIDDADIE-EILHLLIDQP--FLPVVDDD-GIFIGIIT 109 (116)
T ss_pred hCCcHHHHhcC--CCceecCCCCHH-HHHHHHhcCC--ceeEEeCC-CeEEEEEE
Confidence 57789999977 467789999997 8999998755 59999754 68999986
No 115
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=95.20 E-value=0.037 Score=40.64 Aligned_cols=39 Identities=18% Similarity=0.358 Sum_probs=34.7
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
++.+++.++++. ++.+.+.+.+++++||.++ ++++|++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~ 40 (110)
T cd04609 2 DVVSVAPDDTVS-QAIERMREYGVSQLPVVDD--GRVVGSID 40 (110)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCceeeEeeC--CeeEEEEe
Confidence 467789999997 9999999999999999986 89999986
No 116
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=95.13 E-value=0.043 Score=40.33 Aligned_cols=40 Identities=23% Similarity=0.511 Sum_probs=35.0
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+...++.++++. ++.+.+.+++++++||.+++ ++++|+++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~ 42 (110)
T cd04601 3 DPITVSPDATVA-EALELMAEYGISGLPVVDDD-GKLVGIVT 42 (110)
T ss_pred CCeEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CEEEEEEE
Confidence 567789999997 89999999999999999865 88999986
No 117
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=95.12 E-value=0.038 Score=41.34 Aligned_cols=39 Identities=21% Similarity=0.434 Sum_probs=34.9
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
++.+++.+++++ ++++.+.+.+++++||.++ ++++|+++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~i~ 40 (122)
T cd04585 2 NPITVTPDTSLM-EALKLMKENSIRRLPVVDR--GKLVGIVT 40 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHhCCcceeeEecC--CeEEEEEe
Confidence 457789999997 9999999999999999987 89999986
No 118
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.09 E-value=0.032 Score=53.55 Aligned_cols=50 Identities=14% Similarity=0.260 Sum_probs=44.1
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+..++|+|++ +..+++.++++. ++++.+.+++..++||.+++ ++++|+|.
T Consensus 147 ~~~V~diMt~--~~itV~~d~sL~-eAl~lM~~~~i~~LPVVD~~-g~lvGIIT 196 (479)
T PRK07807 147 FTQVRDVMST--DLVTLPAGTDPR-EAFDLLEAARVKLAPVVDAD-GRLVGVLT 196 (479)
T ss_pred CCCHHHhccC--CceEECCCCcHH-HHHHHHHhcCCCEEEEEcCC-CeEEEEEE
Confidence 3679999985 788999999997 99999999999999999764 68999985
No 119
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=95.09 E-value=0.047 Score=40.17 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=32.4
Q ss_pred EEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 218 AIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 218 ~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
.++.++++. ++++.+.+.+++++||+++ ++.+|+++
T Consensus 5 ~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~ 40 (104)
T cd04594 5 KVKDYDKVY-EAKRIMIENDLLSLPVVDY--NKFLGAVY 40 (104)
T ss_pred EECCCCCHH-HHHHHHHHcCCcEEEEEEC--CEEEEEEE
Confidence 578899997 9999999999999999986 88999986
No 120
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=95.07 E-value=0.045 Score=40.47 Aligned_cols=39 Identities=26% Similarity=0.471 Sum_probs=34.8
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+...++.++++. ++.+.+.+.+++++||+++ ++.+|++.
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~ 41 (110)
T cd04595 3 PVKTVRPEATIE-EARELLLRYGHTALPVVEG--GRVVGIIS 41 (110)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCCCeeeEeeC--CEEEEEEE
Confidence 567889999997 8999999999999999987 88999986
No 121
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=95.07 E-value=0.045 Score=40.51 Aligned_cols=39 Identities=15% Similarity=0.388 Sum_probs=35.0
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
++.+++.+++++ ++++.+.+.+++++||+++ ++++|++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~i~ 40 (113)
T cd04622 2 DVVTVSPDDTIR-EAARLMREHDVGALPVCEN--DRLVGIVT 40 (113)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEE
Confidence 567789999997 9999999999999999986 89999986
No 122
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=95.06 E-value=0.046 Score=40.35 Aligned_cols=49 Identities=24% Similarity=0.378 Sum_probs=41.7
Q ss_pred ccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 204 ~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
..+.++|. .+...++.++++. ++++.+.+.+...+||.+++ +.++|++.
T Consensus 55 ~~v~~~~~--~~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~ 103 (110)
T cd04588 55 AKVKDVMT--KDVITIDEDEQLY-DAIRLMNKHNVGRLIVTDDE-GRPVGIIT 103 (110)
T ss_pred cCHHHHhc--CCceEECCCCCHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEE
Confidence 56788885 4778899999997 99999999999999999764 68999986
No 123
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=95.05 E-value=0.04 Score=40.60 Aligned_cols=39 Identities=18% Similarity=0.531 Sum_probs=34.7
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
++..++.++++. ++.+.+.+.+++++||+++ +..+|+++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~ 40 (111)
T cd04612 2 DVVTVPVDLTVD-EVLALMFGERHRGYPVVDD--GRLVGIVT 40 (111)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCCCcceEeeC--CeEEEEEE
Confidence 456788999997 9999999999999999987 88999987
No 124
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=95.02 E-value=0.034 Score=53.32 Aligned_cols=50 Identities=10% Similarity=0.222 Sum_probs=43.9
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+..++++|++ +..+++.++++. ++++.+.+++..++||.+++ ++++|+|.
T Consensus 145 ~~~V~dIMt~--~litv~~~~sL~-eAl~lM~~~~i~~LPVVD~~-g~LvGIIT 194 (475)
T TIGR01303 145 FTQVRDIMST--DLVTAPADTEPR-KAFDLLEHAPRDVAPLVDAD-GTLAGILT 194 (475)
T ss_pred CCCHHHHccC--CceEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEE
Confidence 3679999985 688899999997 99999999999999999754 67999985
No 125
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=94.96 E-value=0.052 Score=40.03 Aligned_cols=40 Identities=20% Similarity=0.338 Sum_probs=34.9
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV 257 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~ 257 (258)
++..++.+++++ ++.+.+.+.+++++||+++ +..+|+++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~ 41 (110)
T cd04588 2 PLITLNPNATLR-EAARLFNTHHIHGAPVVDD--GKLVGIVTL 41 (110)
T ss_pred CcEEECCCCCHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEH
Confidence 466788999997 8999999999999999987 789999873
No 126
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=94.95 E-value=0.056 Score=39.63 Aligned_cols=41 Identities=17% Similarity=0.338 Sum_probs=35.2
Q ss_pred ceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 214 ~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
.++..++.+++++ ++.+.+.+.+++++||++++ +..+|+++
T Consensus 2 ~~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~ 42 (109)
T cd04583 2 KNPVTITPDRTLA-EAIKLMRDKKVDSLLVVDKD-NKLLGIVS 42 (109)
T ss_pred CCCEEECCCCCHH-HHHHHHHHCCCceEEEEcCC-CcEEEEEE
Confidence 3566789999997 89999999999999999864 78999986
No 127
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=94.88 E-value=0.057 Score=39.40 Aligned_cols=40 Identities=18% Similarity=0.319 Sum_probs=34.3
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV 257 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~ 257 (258)
++..++.++++. ++++.+.+.+++++||.++ ++++|+++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~Giv~~ 41 (105)
T cd04599 2 DPITIDPLDSVG-RAARLMEKHRIGGLPVVED--GKLVGIITS 41 (105)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEeh
Confidence 456789999997 8999999999999999973 789999863
No 128
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=94.86 E-value=0.059 Score=39.40 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=34.8
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
++.+++.++++. ++++.+.+.+++.+||.+++ +..+|++.
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~ 41 (96)
T cd04614 2 NVPTVWEETPLP-VAVRIMELANVKALPVLDDD-GKLSGIIT 41 (96)
T ss_pred CccEeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEE
Confidence 567899999997 89999999999999999753 78899986
No 129
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=94.83 E-value=0.053 Score=40.73 Aligned_cols=40 Identities=18% Similarity=0.409 Sum_probs=35.1
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV 257 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~ 257 (258)
++..++.++++. ++.+.+.+.+++++||+++ ++++|+++.
T Consensus 2 ~~~~i~~~~~~~-~~~~~l~~~~~~~i~V~~~--~~~~G~v~~ 41 (121)
T cd04633 2 PVITVSPDDRVS-HARRLMLDHDISRLPVIEG--GKLVGIVTE 41 (121)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeeEEEEC--CEEEEEEch
Confidence 467789999997 9999999999999999986 899999863
No 130
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=94.75 E-value=0.052 Score=40.83 Aligned_cols=40 Identities=25% Similarity=0.500 Sum_probs=34.9
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
++.+++.++++. ++.+.+.+.+++++||+++ .+.++|++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~-~~~~~G~v~ 41 (122)
T cd04635 2 EPVTCTPDDPVS-KVWDLMLESGFTGLPVVQK-AGELIGIIT 41 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCCCcccEECC-CCcEEEEEE
Confidence 567889999997 8999999999999999964 478999986
No 131
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=94.75 E-value=0.065 Score=39.20 Aligned_cols=40 Identities=20% Similarity=0.525 Sum_probs=35.0
Q ss_pred ceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 214 ~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
.++..++.+.+++ ++++.+.+.+++++||.++ ++++|+++
T Consensus 2 ~~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~--~~~~g~v~ 41 (107)
T cd04610 2 RDVITVSPDNTVK-DVIKLIKETGHDGFPVVDN--GKVVGIVS 41 (107)
T ss_pred CCcEEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEE
Confidence 3577889999997 8999998889999999975 88999987
No 132
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=94.74 E-value=0.043 Score=40.61 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=34.9
Q ss_pred ceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 214 ~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
.++..++.++++. ++++.+.+++++++||++++ +..+|+++
T Consensus 2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~ 42 (114)
T cd04604 2 DALPLVSPDTSLK-DALLEMSRKGLGMTAVVDED-GRLVGIFT 42 (114)
T ss_pred CcccccCCCCcHH-HHHHHHHhcCccEEEEEcCC-CCEEEEec
Confidence 3566788999997 89999998999999999764 68999987
No 133
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=94.71 E-value=0.07 Score=39.45 Aligned_cols=39 Identities=23% Similarity=0.372 Sum_probs=34.1
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
++..++.++++. ++++.+.+++++++||.+++ +++|+++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~--~~~G~v~ 40 (112)
T cd04802 2 NVITVDPDTTVY-EAANIMTENNIGRLIVVDNE--KPVGIIT 40 (112)
T ss_pred CcEEECCCCCHH-HHHHHHHHCCCCEEEEEECC--EEEEEEE
Confidence 456789999997 89999999999999999864 8999986
No 134
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=94.68 E-value=0.068 Score=39.11 Aligned_cols=40 Identities=13% Similarity=0.277 Sum_probs=34.4
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
++..++.+++++ ++++.+.+.+++++||++++ ++++|++.
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~~~v~d~~-g~~~Giv~ 41 (106)
T cd04582 2 EPITVRPDDPLS-DALGLMDDSDLRALTVVDAD-GQPLGFVT 41 (106)
T ss_pred CCcEecCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEe
Confidence 567789999997 89999999999999999754 78999986
No 135
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=94.66 E-value=0.068 Score=39.55 Aligned_cols=39 Identities=15% Similarity=0.304 Sum_probs=34.0
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+...++.+++++ ++++.+.+.+++++||+++ ++++|+++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~ 40 (111)
T cd04589 2 PPLIVDASTSIR-DAARLMREHGADALLVRDG--DPRLGIVT 40 (111)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEecC--CeEEEEEE
Confidence 346788999997 8999999999999999987 78999987
No 136
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=94.55 E-value=0.072 Score=39.18 Aligned_cols=49 Identities=18% Similarity=0.381 Sum_probs=41.2
Q ss_pred ccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 204 ~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
..+.++|.+ ++..++.++++. ++++.+.+.+.+.+||.++ .++++|++.
T Consensus 56 ~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~-~~~~~G~it 104 (111)
T cd04612 56 VLVGDVMTR--DPVTASPDETLR-DALKRMAERDIGRLPVVDD-SGRLVGIVS 104 (111)
T ss_pred cCHHHhccC--CCeEECCCCCHH-HHHHHHHhCCCCeeeEEcC-CCCEEEEEE
Confidence 456777764 578899999997 8999999999999999976 367999986
No 137
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=94.55 E-value=0.041 Score=48.22 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=43.6
Q ss_pred ccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 204 ~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
.+|+++|.+. ++..++.++++. ++++.+.+.+++.+||.+++ ++.+|++.
T Consensus 155 ~~v~~im~~~-~~~~v~~~~~v~-~a~~~~~~~~~~~~~Vvd~~-g~~~Givt 204 (268)
T TIGR00393 155 VKVKDLMQTT-DLPLIAPTTSFK-DALLEMSEKRLGSAIVCDEN-NQLVGVFT 204 (268)
T ss_pred hhHHHHhCCC-CCCcCCCCCcHH-HHHHHHhhcCCcEEEEEeCC-CCEEEEEE
Confidence 7899999875 377899999997 89999999999999999764 78999986
No 138
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=94.53 E-value=0.071 Score=39.15 Aligned_cols=49 Identities=22% Similarity=0.400 Sum_probs=40.7
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+..+.++|.+ +..+++.++++. ++++.+.+++..++||.++ ++++|+++
T Consensus 51 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~G~it 99 (106)
T cd04638 51 EEQLALLMTR--DPPTVSPDDDVK-EAAKLMVENNIRRVPVVDD--GKLVGIVT 99 (106)
T ss_pred cchHHHHhcC--CCceECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEE
Confidence 3457778864 567789999996 9999999999999999975 58999986
No 139
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=94.35 E-value=0.063 Score=51.17 Aligned_cols=52 Identities=25% Similarity=0.436 Sum_probs=45.7
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
.+.+++++|+| .++.+++.+++++ ++++.+.+++..++||.+++ ++++|++.
T Consensus 141 ~~~~V~dvm~~-~~~~~V~~~~sl~-eal~~m~~~~~~~lpVVDe~-G~lvGiVT 192 (450)
T TIGR01302 141 KGKPVSEVMTR-EEVITVPEGIDLE-EALKVLHEHRIEKLPVVDKN-GELVGLIT 192 (450)
T ss_pred CCCCHHHhhCC-CCCEEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEE
Confidence 36789999986 5788999999997 99999999999999999764 67999986
No 140
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=94.32 E-value=0.089 Score=39.22 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=33.8
Q ss_pred EEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 216 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 216 v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
...++.++++. ++.+.+.+.+++++||++++ ++.+|+++
T Consensus 3 ~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~ 41 (115)
T cd04593 3 PPVLSATTPLR-EAAEQLIESKHGSALVVDRD-GGVVGIIT 41 (115)
T ss_pred CcEeCCCCCHH-HHHHHHHhCCCcEEEEEcCC-CCEEEEEE
Confidence 45678899997 89999999999999999764 78999986
No 141
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=94.17 E-value=0.15 Score=36.86 Aligned_cols=47 Identities=30% Similarity=0.591 Sum_probs=39.9
Q ss_pred ccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 206 ASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 206 v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+.++|. .+...++.++++. ++++.+.+.+.+.+||.+++ +.++|++.
T Consensus 60 ~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~ 106 (113)
T cd02205 60 VGDVMT--RDVVTVSPDTSLE-EAAELMLEHGIRRLPVVDDE-GRLVGIVT 106 (113)
T ss_pred HHHHhc--CCceecCCCcCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEE
Confidence 567775 4677788999997 99999999999999999876 78999986
No 142
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=94.14 E-value=0.11 Score=38.47 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=34.7
Q ss_pred ceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 214 ~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+++..++.+++++ ++.+.+.+.+++++||.++ ++++|++.
T Consensus 1 ~~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~ 40 (113)
T cd04587 1 TKPATVSPTTTVQ-EAAKLMREKRVSCVLVMDG--NKLVGIFT 40 (113)
T ss_pred CCCeEeCCCCCHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEE
Confidence 3567789999997 8999999999999999975 88999986
No 143
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=94.02 E-value=0.11 Score=38.51 Aligned_cols=43 Identities=21% Similarity=0.417 Sum_probs=37.3
Q ss_pred cccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 209 AMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 209 iM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+|.+ +..+++.++++. ++++.+.+++..++||.++ ++++|++.
T Consensus 56 ~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~pVv~~--~~~~Gvvt 98 (105)
T cd04591 56 YIDP--SPFTVSPRTSLE-KVHQLFRKLGLRHLLVVDE--GRLVGIIT 98 (105)
T ss_pred hccC--CCceECCCCcHH-HHHHHHHHcCCCEEEEEEC--CeEEEEEE
Confidence 7764 677899999997 9999999999999999953 68999986
No 144
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=94.00 E-value=0.082 Score=51.01 Aligned_cols=63 Identities=17% Similarity=0.292 Sum_probs=54.6
Q ss_pred hHHHHHHhhhc---cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025095 190 DETTIIAGALE---LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV 257 (258)
Q Consensus 190 ~E~~mi~~i~~---~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~ 257 (258)
.+++|..+++. =.+.+|++||| .++.+++.++.+= |++-.+.+.+.-|+||+++ ++++|+++.
T Consensus 197 T~~dl~~~v~~~g~~~~~~V~evmT--~p~~svd~~~~~f-eAml~m~r~~I~hl~V~e~--gq~~Gilt~ 262 (610)
T COG2905 197 TRKDLRSRVIADGRSKTQKVSEVMT--SPVISVDRGDFLF-EAMLMMLRNRIKHLPVTED--GQPLGILTL 262 (610)
T ss_pred ehHHHHHHHHhcCCCcccchhhhhc--cCceeecCcchHH-HHHHHHHHhCCceeeeecC--CeeeEEeeH
Confidence 46788888885 23578999999 6899999999995 9999999999999999987 799999975
No 145
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=93.98 E-value=0.12 Score=39.56 Aligned_cols=41 Identities=22% Similarity=0.414 Sum_probs=35.3
Q ss_pred ceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 214 ~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
.+...++.++++. ++.+.+.+++++++||.+++ ++.+|++.
T Consensus 2 ~~~~~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~ 42 (124)
T cd04608 2 KAPVTVLPTVTCA-EAIEILKEKGFDQLPVVDES-GKILGMVT 42 (124)
T ss_pred CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEE
Confidence 3567889999997 99999999999999999764 78999986
No 146
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=93.81 E-value=0.1 Score=39.04 Aligned_cols=51 Identities=20% Similarity=0.337 Sum_probs=40.7
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCc---eeeeeeCCCCcEEEEEE
Q 025095 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHS---RVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~S---R~PVy~~~~D~IvGiv~ 256 (258)
++.++.++|.+ +...++.+++++ ++++.+.+++.. .+||.+++ +.++|++.
T Consensus 59 ~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~vv~~~-~~~~Gvvs 112 (119)
T cd04598 59 GKKPVSEVMDP--DPLIVEADTPLE-EVSRLATGRDSQNLYDGFIVTEE-GRYLGIGT 112 (119)
T ss_pred cCCcHHHhcCC--CcEEecCCCCHH-HHHHHHHcCCcccccccEEEeeC-CeEEEEEE
Confidence 56789999975 577899999997 999999888753 45677654 78999986
No 147
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=93.79 E-value=0.11 Score=38.62 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=33.2
Q ss_pred eEEEEeCCCCccHHHHHHHHHcC-CceeeeeeCCCCcEEEEEE
Q 025095 215 ETFAIDINAKLDKELMNLILEKG-HSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~-~SR~PVy~~~~D~IvGiv~ 256 (258)
++..++.++++. ++.+.+.+.+ ++++||.++ .++++|+++
T Consensus 2 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~ 42 (114)
T cd04801 2 DFPTVPAHLTLR-EFVREYVLGSNQRRFVVVDN-EGRYVGIIS 42 (114)
T ss_pred CcceeCCCCCHH-HHHHHHhccCCceeEEEEcC-CCcEEEEEE
Confidence 567789999997 8999887665 899999975 378999986
No 148
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=93.72 E-value=0.096 Score=38.76 Aligned_cols=40 Identities=18% Similarity=0.315 Sum_probs=33.8
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
++..++.++++. ++.+.+.+.+++++||++++ +..+|+++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~ 41 (114)
T cd04629 2 NPVTFTPDMSVT-EAVEKLLKSKISGGPVVDDN-GNLVGFLS 41 (114)
T ss_pred CCeEeCCCCCHH-HHHHHHHhcCCCCccEECCC-CeEEEEee
Confidence 456788999997 89999988999999999753 67999986
No 149
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=93.68 E-value=0.17 Score=37.64 Aligned_cols=40 Identities=28% Similarity=0.431 Sum_probs=34.6
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+..+++.++++. ++.+.+.+++++++||.+++ ++++|++.
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~ 41 (111)
T cd04603 2 QTVSVNCENPLR-EAIKMINELGARAVVVVDEE-NKVLGQVT 41 (111)
T ss_pred ceEEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEE
Confidence 467889999997 89999999999999999753 68999986
No 150
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=93.68 E-value=0.16 Score=49.01 Aligned_cols=81 Identities=9% Similarity=0.252 Sum_probs=57.3
Q ss_pred cccHHHHHHHHHhhcccccCCCCC-----CHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCC
Q 025095 164 LFRRAELKTLVNLHGNEAGKGGEL-----THDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGH 238 (258)
Q Consensus 164 ~~s~eEl~~lv~~~~~e~~~~g~l-----~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~ 238 (258)
.+|+.++-.-+... + --|.+ -+++.+.++++-+.+ +.|++ +.++++.++++. ++++.+.+.++
T Consensus 60 ~vt~~~ma~a~a~~---G-glGvi~~~~~~e~~~~~v~kvk~~e-----~g~i~--dpvtv~pd~tv~-eA~~lm~~~~~ 127 (495)
T PTZ00314 60 TVTEHKMAIAMALM---G-GIGVIHNNCSIEEQVEEVRKVKRFE-----NGFIM--DPYVLSPNHTVA-DVLEIKEKKGF 127 (495)
T ss_pred ccccHHHHHHHHHC---C-CeEEecCCCCHHHHHHHHhhccccc-----ccccc--CCeecCCCCCHH-HHHHHHHHcCC
Confidence 46777776666531 1 11222 235677777776544 46653 557899999997 99999999999
Q ss_pred ceeeeeeCC--CCcEEEEEE
Q 025095 239 SRVPVYYEE--PTNIIGLIL 256 (258)
Q Consensus 239 SR~PVy~~~--~D~IvGiv~ 256 (258)
+++||.+++ .++++|+++
T Consensus 128 s~vpVvd~~~~~gkLvGIVt 147 (495)
T PTZ00314 128 SSILITVDGKVGGKLLGIVT 147 (495)
T ss_pred cEEEEEeCCccCCeEEEEEE
Confidence 999999864 367999986
No 151
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=93.68 E-value=0.17 Score=37.80 Aligned_cols=40 Identities=25% Similarity=0.325 Sum_probs=34.8
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
++..++.++++. ++.+.+.++++..+||.+++ ++.+|++.
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~-g~~~G~vt 41 (114)
T cd04619 2 RLAKIDVNATLQ-RAAKILGEPGIDLVVVCDPH-GKLAGVLT 41 (114)
T ss_pred ceEEECCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEe
Confidence 467789999997 99999999999999999764 68999986
No 152
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=93.24 E-value=0.14 Score=49.25 Aligned_cols=51 Identities=24% Similarity=0.400 Sum_probs=44.4
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+.+++++|++ .++++++.++++. ++++.+.+++++++||.+++ ++++|++.
T Consensus 146 ~~~V~dim~~-~~~v~v~~~~sl~-eal~~m~~~~~~~lpVVDe~-g~lvGiIT 196 (486)
T PRK05567 146 SQPVSEVMTK-ERLVTVPEGTTLE-EALELLHEHRIEKLPVVDDN-GRLKGLIT 196 (486)
T ss_pred CCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEE
Confidence 4679999984 4678899999997 99999999999999999865 68999985
No 153
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=93.20 E-value=0.17 Score=37.68 Aligned_cols=42 Identities=14% Similarity=0.389 Sum_probs=35.1
Q ss_pred ceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCC--CCcEEEEEE
Q 025095 214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLIL 256 (258)
Q Consensus 214 ~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~--~D~IvGiv~ 256 (258)
.+...++.++++. ++++.+.+.+++++||.++. .++++|++.
T Consensus 2 ~~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~ 45 (114)
T cd04602 2 TDPSVLSPDHTVA-DVLEIKEKKGFSGIPVTEDGKSGGKLLGIVT 45 (114)
T ss_pred CCCeEcCCCCCHH-HHHHHHHHcCCCceEEeeCCCcCCEEEEEEE
Confidence 3556788999997 89999999999999999863 478999986
No 154
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=93.12 E-value=0.18 Score=45.12 Aligned_cols=53 Identities=19% Similarity=0.303 Sum_probs=46.1
Q ss_pred ccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 200 ~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
.+...+++.||+| .+.++..|++.. |++..+.+.|+--+||.++ .+.++||+.
T Consensus 311 ~~~~~~vk~imt~--~v~tv~pdtpa~-~lvp~lad~g~H~lpvld~-~g~lvGIvs 363 (382)
T COG3448 311 FLRPPTVKGIMTT--PVVTVRPDTPAV-ELVPRLADEGLHALPVLDA-AGKLVGIVS 363 (382)
T ss_pred ccCCCcccccccC--cceeecCCCcHH-HHHHHhhcCCcceeeEEcC-CCcEEEEee
Confidence 4577899999996 467889999986 9999999999999999986 489999985
No 155
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=93.10 E-value=0.26 Score=47.75 Aligned_cols=82 Identities=12% Similarity=0.182 Sum_probs=57.4
Q ss_pred cccHHHHHHHHHhhcccccC----CCCCCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCc
Q 025095 164 LFRRAELKTLVNLHGNEAGK----GGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHS 239 (258)
Q Consensus 164 ~~s~eEl~~lv~~~~~e~~~----~g~l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~S 239 (258)
..|+.++-..+... ++= .+.=.++..+.++.+.+.. ..|+ .+.++++.++++. ++++.+.+++++
T Consensus 64 ~vt~~~lA~Ama~a---GGiGfI~~~as~E~q~~~Irkvk~~~-----~gmi--~dpvtV~pd~tV~-dA~~lm~~~~~~ 132 (505)
T PLN02274 64 TVTESDMAIAMAAL---GGIGIVHYNNTAEEQAAIVRKAKSRR-----VGFV--SDPVVKSPSSTIS-SLDELKASRGFS 132 (505)
T ss_pred ccchHHHHHHHHhC---CCeEEEcCCCCHHHHHHHHHHhhccc-----cccc--CCCeeeCCCCcHH-HHHHHHHhcCCc
Confidence 45677776666521 100 0111345567888888542 2366 4778899999997 999999999999
Q ss_pred eeeeeeCC--CCcEEEEEE
Q 025095 240 RVPVYYEE--PTNIIGLIL 256 (258)
Q Consensus 240 R~PVy~~~--~D~IvGiv~ 256 (258)
.+||.+++ .+.++|+|.
T Consensus 133 ~lpVvD~~~~~GklvGIVT 151 (505)
T PLN02274 133 SVCVTETGTMGSKLLGYVT 151 (505)
T ss_pred eEEEEeCCCcCCeEEEEEE
Confidence 99999764 367999986
No 156
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=92.80 E-value=0.25 Score=36.46 Aligned_cols=39 Identities=15% Similarity=0.388 Sum_probs=33.6
Q ss_pred EEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 216 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 216 v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
...++.++++. ++++.+.+++++++||.+++ +..+|++.
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~vvd~~-~~~~G~v~ 41 (113)
T cd04615 3 PSCVVLNTDIA-RAVAEMYTSGSRALPVVDDK-KRLVGIIT 41 (113)
T ss_pred CEEeeCCCcHH-HHHHHHHHcCCceEeEEcCC-CCEEEEEE
Confidence 46688999997 89999999999999999764 78999986
No 157
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=92.76 E-value=0.15 Score=44.72 Aligned_cols=50 Identities=18% Similarity=0.285 Sum_probs=44.7
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+.+|+|+|.+ ++++++.|+.+- |+++.+..++.-|+-|.+. .+..+|++.
T Consensus 233 ~~kV~~~M~k--~vitI~eDe~i~-dAir~M~~~nVGRLlV~ds-~gkpvGiIT 282 (294)
T COG2524 233 DAKVSDYMRK--NVITINEDEDIY-DAIRLMNKNNVGRLLVTDS-NGKPVGIIT 282 (294)
T ss_pred cccHHHHhcc--CCceEcCchhHH-HHHHHHHhcCcceEEEEcc-CCcEEEEEe
Confidence 5789999985 899999999997 9999999999999999964 488999974
No 158
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=92.74 E-value=0.17 Score=37.04 Aligned_cols=48 Identities=23% Similarity=0.318 Sum_probs=37.1
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+..+.++|.+ +...++.++++. ++.+.+.+ . ...||.+++ ++++|+++
T Consensus 56 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~-~-~~~~vv~~~-~~~~Gvvt 103 (110)
T cd04609 56 SLPVREVMGE--PLPTVDPDAPIE-ELSELLDR-G-NVAVVVDEG-GKFVGIIT 103 (110)
T ss_pred CcCHHHHhcC--CCceeCCCCcHH-HHHHHHHh-C-CceeEEecC-CeEEEEEe
Confidence 4678888854 577899999996 88888877 3 347888764 67999986
No 159
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=92.71 E-value=0.24 Score=37.68 Aligned_cols=40 Identities=25% Similarity=0.472 Sum_probs=34.1
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+..+++.+++++ ++++.+.++++..+||.+++ ++++|+++
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~ 41 (126)
T cd04640 2 KPIVIPADTSID-EALELMIKHGVRLLLVVDSD-DNFIGVIT 41 (126)
T ss_pred CCeEECCCCcHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEE
Confidence 356789999997 89999988888899999754 78999987
No 160
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=92.69 E-value=0.18 Score=37.67 Aligned_cols=39 Identities=13% Similarity=0.253 Sum_probs=33.5
Q ss_pred eEEEEeCCCCccHHHHHHHHHcC-CceeeeeeCCCCcEEEEEE
Q 025095 215 ETFAIDINAKLDKELMNLILEKG-HSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~-~SR~PVy~~~~D~IvGiv~ 256 (258)
++..++.++++. ++.+.+.+.+ ++++||.++ ++++|++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~ 41 (119)
T cd04598 2 PAPTVSPDTTVN-DVLERFERDPDLSALAVVDD--GRPVGLIM 41 (119)
T ss_pred CcCccCCCCcHH-HHHHHHHhCCCccEEEEEEC--CeeEEEEE
Confidence 345678899997 8999998887 899999987 89999986
No 161
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=91.98 E-value=0.72 Score=43.99 Aligned_cols=68 Identities=22% Similarity=0.333 Sum_probs=57.6
Q ss_pred CCCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCC---ceeeeeeCC-CCcEEEEEE
Q 025095 186 ELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGH---SRVPVYYEE-PTNIIGLIL 256 (258)
Q Consensus 186 ~l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~---SR~PVy~~~-~D~IvGiv~ 256 (258)
.++++|++-++..+...+-++..+|+ ++.++++.+.|++ ++++.+++.+. +++.+|==| .....|++.
T Consensus 114 ~l~~~~r~~v~~~l~y~e~taG~~Mt--~e~v~l~~~~Tv~-~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvs 185 (451)
T COG2239 114 LLDPEERARVRQLLSYPEDTAGRIMT--TEFVTLPEDVTVD-EALDRIRERAEDAETIYYLYVVDEKGKLLGVVS 185 (451)
T ss_pred hCCHHHHHHHHHhcCCChhhhhccce--eeeEEeccCcCHH-HHHHHHHHhcccccccceEEEECCccceEEEee
Confidence 47889999999999999999999999 5999999999997 99999997764 567777323 346999985
No 162
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=91.60 E-value=0.27 Score=47.22 Aligned_cols=50 Identities=16% Similarity=0.267 Sum_probs=42.7
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
..+++++|+ .+.++++.++++. ++.+.+.+++++.+||.+++ +..+|+|.
T Consensus 88 ~VKv~~iMi--~~pvtv~~d~tv~-eA~~~m~~~~~s~l~VVD~~-gklvGIVT 137 (479)
T PRK07807 88 WVKSRDLVF--DTPVTLSPDDTVG-DALALLPKRAHGAVVVVDEE-GRPVGVVT 137 (479)
T ss_pred hcccccccc--cCCeEECCCCCHH-HHHHHHHhcCCceEEEECCC-CeEEEEEe
Confidence 556789996 4678899999997 99999999999999999753 57999986
No 163
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=91.57 E-value=0.35 Score=35.83 Aligned_cols=39 Identities=15% Similarity=0.350 Sum_probs=32.2
Q ss_pred eEEEEeCCCCccHHHHHHHHHcC-CceeeeeeCCCCcEEEEEE
Q 025095 215 ETFAIDINAKLDKELMNLILEKG-HSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~-~SR~PVy~~~~D~IvGiv~ 256 (258)
+...++.+.++. ++++.+.+++ ++.+||.++ ++++|+++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~--~~~~G~v~ 41 (115)
T cd04620 2 HPLTVTPDTPVA-DAIALMSQQGDSSCVLVVEK--GRLLGIFT 41 (115)
T ss_pred CCeEeCCCCcHH-HHHHHHHhcCCCceEEEcCC--CcEEEEEe
Confidence 346788999997 8999998888 777888874 78999986
No 164
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=91.09 E-value=0.52 Score=34.83 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=33.6
Q ss_pred EEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025095 216 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV 257 (258)
Q Consensus 216 v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~ 257 (258)
.+.++.++++. ++.+.+.+.++..+||.+++ ++++|+++.
T Consensus 4 ~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~ 43 (113)
T cd04607 4 QLLVSPDASIL-DALRKIDKNALRIVLVVDEN-GRLLGTVTD 43 (113)
T ss_pred ceEECCCCCHH-HHHHHHHhcCcCEEEEECCC-CCEEEEEEc
Confidence 45688999997 99999998999999999764 679999873
No 165
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=90.52 E-value=0.64 Score=34.82 Aligned_cols=40 Identities=10% Similarity=0.215 Sum_probs=34.2
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+..+++.++++. ++.+.+.+++.+.+||.+++ ++.+|++.
T Consensus 2 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~Givt 41 (118)
T cd04617 2 PPVVVRENTSVY-DAIVTLFLEDVGSLFVVDED-GDLVGVVS 41 (118)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEE
Confidence 457889999997 89999999999999999763 67999986
No 166
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=90.41 E-value=0.34 Score=46.83 Aligned_cols=60 Identities=15% Similarity=0.294 Sum_probs=43.6
Q ss_pred HhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCC--CCcEEEEEE
Q 025095 189 HDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLIL 256 (258)
Q Consensus 189 ~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~--~D~IvGiv~ 256 (258)
+++.+++..+-++... .++.| ..++.++++. ++++.+.+++++.+||.+++ .+.++|++.
T Consensus 87 e~qa~lV~kVk~~~~g---~i~~~----~tV~pd~tl~-eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT 148 (502)
T PRK07107 87 ESEAAMVRRVKNYKAG---FVVSD----SNLTPDNTLA-DVLDLKEKTGHSTVAVTEDGTAHGKLLGIVT 148 (502)
T ss_pred HHHHHHHHHHHHHhcC---CcCCC----CEeCCCCcHH-HHHHHHHhcCCCeEEEEeCCCcCCEEEEEEE
Confidence 5566665555443321 22223 5899999997 99999999999999999863 468999985
No 167
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=89.75 E-value=0.47 Score=34.88 Aligned_cols=36 Identities=14% Similarity=0.249 Sum_probs=28.8
Q ss_pred EeCCCCccHHHHHHHHHcCC-----ceeeeeeCCCCcEEEEEE
Q 025095 219 IDINAKLDKELMNLILEKGH-----SRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 219 l~~~~~~~~e~~~~~~~~~~-----SR~PVy~~~~D~IvGiv~ 256 (258)
++.++++. ++++.+.++++ ..+||.+++ ++.+|++.
T Consensus 2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~ 42 (109)
T cd04606 2 VREDWTVG-EALEYLRRNADDPETIYYIYVVDEE-GRLLGVVS 42 (109)
T ss_pred ccccCcHH-HHHHHHHhccCcccceeEEEEECCC-CCEEEEEE
Confidence 56788886 89999988884 678888654 78999986
No 168
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=89.32 E-value=0.2 Score=38.41 Aligned_cols=51 Identities=18% Similarity=0.200 Sum_probs=38.2
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHH---------HHcCCceeeeeeCCCCcEEEEEE
Q 025095 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLI---------LEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~---------~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
.+.+|.|+|++ +..+++.+++++ ++.+.+ .++...++||.++ .++++|++.
T Consensus 57 ~~~~v~~im~~--~~~~v~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~Givt 116 (124)
T cd04608 57 PSDPVSKALYK--QFKRVNKNDTLG-KLSRILETDAFLLVFFEQISSAAIGKEK-QEKPIGIVT 116 (124)
T ss_pred CCCcHHHHhhc--cceecCCCCCHH-HHHhhcccCCceEEEecccccccccccc-ccceEEEEe
Confidence 45789999975 677899999996 777744 2335667777764 379999986
No 169
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=88.98 E-value=0.96 Score=33.17 Aligned_cols=39 Identities=15% Similarity=0.301 Sum_probs=32.8
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
++..++.++++. ++.+.+.+.+++++||-++ ++++|++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~ 40 (112)
T cd04625 2 TIYTVAPETLLS-EAVATMAEQDLGSLVVMER--GELVGLLT 40 (112)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEE
Confidence 677899999997 8999998888888887753 78999986
No 170
>COG0517 FOG: CBS domain [General function prediction only]
Probab=88.55 E-value=1.1 Score=33.01 Aligned_cols=44 Identities=27% Similarity=0.512 Sum_probs=37.5
Q ss_pred ccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 208 DAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 208 eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
++|. .+..++..+.++. ++.+.+.+++++++||.+++ ..+|++.
T Consensus 3 ~~~~--~~~~~v~~~~~~~-~a~~~m~~~~~~~~~v~~~~--~l~Giit 46 (117)
T COG0517 3 DIMT--KDVITVKPDTSVR-DALLLMSENGVSAVPVVDDG--KLVGIIT 46 (117)
T ss_pred cccc--CCCEEECCCCcHH-HHHHHHHHcCCCEEEEeeCC--EEEEEEE
Confidence 4455 7888999999997 99999999999999999763 7899874
No 171
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=88.27 E-value=0.46 Score=44.37 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=44.1
Q ss_pred ccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEE
Q 025095 200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLI 255 (258)
Q Consensus 200 ~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv 255 (258)
+=..+.+.|+|+||. ++.+.+.+++ +.-+...++.--++||.+++ |+.+-++
T Consensus 167 ~~~~~~~~~vmt~~~--~~~~~gi~l~-~~neiL~~~kkGkl~iv~~~-gelva~~ 218 (503)
T KOG2550|consen 167 EDNSLLVSDVMTKNP--VTGAQGITLK-EANEILKKIKKGKLPVVDDK-GELVAML 218 (503)
T ss_pred hcccchhhhhccccc--ccccccccHH-HHHHHHHhhhcCCcceeccC-Cceeeee
Confidence 446688999999999 7788889997 88999999999999999764 7777665
No 172
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=88.13 E-value=0.66 Score=41.65 Aligned_cols=48 Identities=10% Similarity=0.146 Sum_probs=40.5
Q ss_pred ccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 204 ~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
.+++++|.| .+.++.++++. ++++.+++.+....||.++. +.++|+|.
T Consensus 133 ~~l~~l~r~---~~~V~e~~~l~-~~L~~m~~~~~~~a~VvDe~-G~viGiVT 180 (292)
T PRK15094 133 FSMDKVLRQ---AVVVPESKRVD-RMLKEFRSQRYHMAIVIDEF-GGVSGLVT 180 (292)
T ss_pred CCHHHHcCC---CcCcCCCCcHH-HHHHHHHhcCCEEEEEEeCC-CCEEEEeE
Confidence 347888875 34799999997 99999999999999999864 57999986
No 173
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=88.05 E-value=0.48 Score=45.16 Aligned_cols=54 Identities=20% Similarity=0.288 Sum_probs=47.1
Q ss_pred ccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025095 200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV 257 (258)
Q Consensus 200 ~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~ 257 (258)
.-++..++++|.++ ++.++.+++.+ |+.+.+.++...-.||.+++ +..+|++.+
T Consensus 192 a~~~~~i~~im~~~--~~~V~~~~dqe-evA~~~~~ydl~a~PVVd~~-~~LiG~iti 245 (451)
T COG2239 192 AEPDELLKDLMEDD--VVSVLADDDQE-EVARLFEKYDLLAVPVVDED-NRLIGIITI 245 (451)
T ss_pred CCcHhHHHHHhccc--ceeecccCCHH-HHHHHHHHhCCeecceECCC-CceeeeeeH
Confidence 55678899999987 88899999986 99999999999999999764 789999863
No 174
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=85.58 E-value=1.2 Score=42.90 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=41.4
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
..+++++|++ +.++++.++++. ++.+.+.+.+++.+||.++ +..+|+|.
T Consensus 87 ~VKv~eim~~--~pvtv~p~~tI~-eA~~lm~~~~~~~~vVvD~--gklvGIVT 135 (475)
T TIGR01303 87 FVKSRDLVLD--TPITLAPHDTVS-DAMALIHKRAHGAAVVILE--DRPVGLVT 135 (475)
T ss_pred hcchhhcccc--CCeEECCCCCHH-HHHHHHHhcCCeEEEEEEC--CEEEEEEE
Confidence 5567788875 567899999997 9999999999999999875 57999985
No 175
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=85.12 E-value=0.45 Score=46.67 Aligned_cols=47 Identities=21% Similarity=0.411 Sum_probs=41.9
Q ss_pred cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCc
Q 025095 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTN 250 (258)
Q Consensus 201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~ 250 (258)
.++.+++|+|.+ .+++++.-+.+. .+.+..+.+.|.-+||.|+..++
T Consensus 579 mr~L~a~ev~~~--pvi~l~~~ekV~-~Iv~vLk~t~HngFPVvd~~~~~ 625 (762)
T KOG0474|consen 579 MRNLTAGEVMSK--PVICLNRVEKVA-VIVDVLKSTNHNGFPVVDEPPSN 625 (762)
T ss_pred hhhhhHhhhccC--CeEEEechhhHH-HHHHHHHhcCcCCCccccCCCCc
Confidence 356789999998 999999999997 89999999999999999887654
No 176
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=83.25 E-value=2.4 Score=39.87 Aligned_cols=49 Identities=22% Similarity=0.206 Sum_probs=41.4
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+.+++++|.| ...++.++++. ++++.+++++....+|.++ -+.++|+|.
T Consensus 254 ~~~l~~~~~~---~~~Vpe~~~l~-~ll~~m~~~~~~~aiVvDE-~G~~~GiVT 302 (408)
T TIGR03520 254 NFDWQSLLRE---PYFVPENKKLD-DLLRDFQEKKNHLAIVVDE-YGGTSGLVT 302 (408)
T ss_pred CCCHHHHcCC---CeEeCCCCcHH-HHHHHHHhcCceEEEEEcC-CCCEEEEEE
Confidence 3457888875 67899999997 9999999999999999976 367999985
No 177
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=82.69 E-value=1.2 Score=34.08 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=28.1
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCC
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEE 247 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~ 247 (258)
++.+++.++++. ++.+.+.+.+++++||++++
T Consensus 2 ~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~ 33 (132)
T cd04636 2 DVITVKKDDTLR-DVVEILLTGKISGVPVVDNE 33 (132)
T ss_pred CCeEeCCCCcHH-HHHHHHHHhCCCccceECCC
Confidence 567889999997 99999999999999999764
No 178
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=81.62 E-value=2.3 Score=39.44 Aligned_cols=49 Identities=22% Similarity=0.492 Sum_probs=41.1
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
...+.+.|. .+..+++.++++. +++..+.+++++ +||.+++ +.++|+|.
T Consensus 301 ~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~i~ 349 (363)
T TIGR01186 301 AQGLQDVLI--DDIYTVDAGTLLR-ETVRKVLKAGIK-VPVVDED-QRLVGIVT 349 (363)
T ss_pred CCchhhhhc--cCCceECCCCcHH-HHHHHHHhCCCC-EEEECCC-CcEEEEEE
Confidence 346888885 4567899999997 999999999999 9999764 78999985
No 179
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=79.77 E-value=1.9 Score=33.02 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=28.2
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCC
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEE 247 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~ 247 (258)
++.+++.++++. ++++.+.++++.++||++++
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~~ 34 (135)
T cd04586 3 DVVTVSPETSVA-EAARLMLDNHISGLPVVDDD 34 (135)
T ss_pred CCEEeCCCCCHH-HHHHHHHHcCCCCceEECCC
Confidence 567889999997 99999999999999999764
No 180
>PF14044 NETI: NETI protein
Probab=79.75 E-value=2 Score=28.75 Aligned_cols=33 Identities=18% Similarity=0.428 Sum_probs=27.4
Q ss_pred EEEeCCCCccHHHHHHHHHcCCcee-----eeeeCCCCc
Q 025095 217 FAIDINAKLDKELMNLILEKGHSRV-----PVYYEEPTN 250 (258)
Q Consensus 217 ~~l~~~~~~~~e~~~~~~~~~~SR~-----PVy~~~~D~ 250 (258)
+.+..+.|++ +.++.+.+.||.-+ |||++..++
T Consensus 2 FeV~enETI~-~CL~RM~~eGY~PvrR~EkPiF~e~k~~ 39 (57)
T PF14044_consen 2 FEVEENETIS-DCLARMKKEGYMPVRRIEKPIFKEVKDG 39 (57)
T ss_pred eeccCCCcHH-HHHHHHHHcCCCceeeccccceEEecCC
Confidence 4577899997 99999999999855 999886664
No 181
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=69.35 E-value=6.2 Score=37.29 Aligned_cols=47 Identities=21% Similarity=0.359 Sum_probs=35.2
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+.++.++|.+ +...++.++++. ++++.+.+++ . ||..++ ++++|+|.
T Consensus 399 ~~~v~~im~~--~~~~v~~~~~l~-~a~~~~~~~~--~-~vV~~~-g~liGvvt 445 (454)
T TIGR01137 399 DDAVSKVMSK--KFIQIGEGEKLS-DLSKFLEKNS--S-AIVTEE-GKPIGVVT 445 (454)
T ss_pred CCCHHHhcCC--CCeEECCcCcHH-HHHHHHHHCC--e-eEEEEC-CEEEEEEE
Confidence 4579999975 567899999997 8998887643 3 444433 78999986
No 182
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=68.50 E-value=5.1 Score=39.54 Aligned_cols=53 Identities=26% Similarity=0.459 Sum_probs=40.6
Q ss_pred cccccccccccc-e--EEEEeCC-CCccHHHHHHHHHcCCceeeee-eCCCCcEEEEEE
Q 025095 203 EKTASDAMTPIA-E--TFAIDIN-AKLDKELMNLILEKGHSRVPVY-YEEPTNIIGLIL 256 (258)
Q Consensus 203 ~~~v~eiM~PR~-~--v~~l~~~-~~~~~e~~~~~~~~~~SR~PVy-~~~~D~IvGiv~ 256 (258)
++...++|-|+. + ...++.+ .+++ |....+.++.||-+||. +++....+|++.
T Consensus 542 ~t~~~~v~~p~~~~~~L~~i~~~s~tl~-~le~~~~~t~~sgfpvvl~~~sq~lvGfv~ 599 (696)
T KOG0475|consen 542 STLAIPVMEPCRSESCLIVITQDSMTLE-DLESLMEDTDFSGFPVVLSEDSQRLVGFVL 599 (696)
T ss_pred cchhhhhhchhcCchhheeccccceeHH-HHHHHHhhcccCCceEEEccccceeEEEEc
Confidence 566777887753 3 4555555 8887 89999999999999977 666778999974
No 183
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=66.33 E-value=9.3 Score=35.91 Aligned_cols=49 Identities=24% Similarity=0.390 Sum_probs=39.7
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+..+.++|.| +..+++.++++. +++..+.++.+. +||.++ .++.+|++.
T Consensus 336 ~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~-~~~~~g~~~ 384 (400)
T PRK10070 336 QQGLDAALID--APLAVDAQTPLS-ELLSHVGQAPCA-VPVVDE-DQQYVGIIS 384 (400)
T ss_pred CCchhhhhcc--CCceeCCCCCHH-HHHHHHHhCCCc-EEEECC-CCcEEEEEE
Confidence 4567788754 467899999997 999999998877 999965 488999985
No 184
>PHA00728 hypothetical protein
Probab=64.54 E-value=5.1 Score=31.06 Aligned_cols=55 Identities=18% Similarity=0.317 Sum_probs=42.9
Q ss_pred CCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeC
Q 025095 187 LTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYE 246 (258)
Q Consensus 187 l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~ 246 (258)
-++++-+-|+|-....++.++|..-|++.|+.++-+.- + - +.....+.|+|.|-+
T Consensus 34 ~~~e~lqEiEnPYTVTNRaIsElV~PkDTMfYLsgnqi-s-L---ILtAfEfarLP~YFg 88 (151)
T PHA00728 34 EEDEELQEIENPYTVTNRAISELVEPKDTMFYLSGNQI-S-L---ILTAFEFARLPAYFG 88 (151)
T ss_pred hhhhhHHHhcCCceehhHHHHHhcCCccceEEecCCch-h-h---HHHHHHHhhchhhhC
Confidence 34566777899999999999999999999999987653 2 2 233446899999955
No 185
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=60.41 E-value=16 Score=34.08 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=38.2
Q ss_pred cccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 211 TPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 211 ~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
...+++++...++++. ++++.+..++-.|+.|.++ .+.++|++.
T Consensus 307 ~~~~~vvtc~~~ssL~-~vi~~lv~~~vHRl~VVd~-~~~l~GvvS 350 (381)
T KOG1764|consen 307 IRFEGVVTCRPTSTLA-EVIDKLVAHRVHRLWVVDE-DGVLVGVIS 350 (381)
T ss_pred cccCccEEEeecchHH-HHHHHHHhcCceEEEEEcC-CCcEEEEee
Confidence 4445589999999997 9999999999999999987 477999985
No 186
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=53.13 E-value=22 Score=29.24 Aligned_cols=51 Identities=18% Similarity=0.291 Sum_probs=34.5
Q ss_pred hccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 199 LELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 199 ~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
=+..+.+|++||- +---.++.|.+++ . +..+.+. |--.-|.++ ++++||+.
T Consensus 125 e~i~~~~vr~vM~--e~fP~Vs~~~~l~-v-I~~LL~~-~~AVlV~e~--G~~vGIIT 175 (187)
T COG3620 125 ESIRSLRVREVMG--EPFPTVSPDESLN-V-ISQLLEE-HPAVLVVEN--GKVVGIIT 175 (187)
T ss_pred cchhhhhHHHHhc--CCCCcCCCCCCHH-H-HHHHHhh-CCeEEEEeC--CceEEEEe
Confidence 3567899999995 1223588999985 4 4444443 445666644 89999984
No 187
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=52.36 E-value=17 Score=34.00 Aligned_cols=47 Identities=15% Similarity=0.217 Sum_probs=36.6
Q ss_pred cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+.++.+ ..++..+++.|++++ +++....+++|. +||.++ ++.+|+|.
T Consensus 325 ~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~--~~~~g~~~ 371 (382)
T TIGR03415 325 EQEVES---LEAAPTVINPDTLMR-DVLAARHRTGGA-ILLVEN--GRIVGVIG 371 (382)
T ss_pred ccchhh---hcccCcccCCCCcHH-HHHHHHhcCCCC-eEEeeC--CeEEEEEe
Confidence 334555 355788899999997 999998888876 777764 89999984
No 188
>PF03563 Bunya_G2: Bunyavirus glycoprotein G2; InterPro: IPR005168 Bunyavirus has three genomic segments: small (S), middle-sized (M), and large (L). The S segment encodes the nucleocapsid and a non-structural protein. The M segment codes for two glycoproteins, G1 and G2, and another non-structural protein (NSm). The L segment codes for an RNA polymerase. This entry represents the polyprotein region forming the G2 glycoprotein, which interacts with the IPR005167 from INTERPRO G1 glycoprotein [].
Probab=48.06 E-value=82 Score=27.97 Aligned_cols=39 Identities=23% Similarity=0.378 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 025095 105 VTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLL 157 (258)
Q Consensus 105 ~~l~lvfgEi~PK~la~~~~~~~a~~~a~~l~~~~~l~~P~~~~l~~~~~~l~ 157 (258)
++++.++.-++-|+ ++.+++.-+|+|++++-+++-++-.
T Consensus 196 ~~~~~i~~~Iltkt--------------Yi~YlliPiF~P~~~~Yg~~ynk~c 234 (285)
T PF03563_consen 196 TLIIFIFLIILTKT--------------YICYLLIPIFYPIAYLYGWLYNKSC 234 (285)
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555566665 6788889999999999999888743
No 189
>PF11131 PhrC_PhrF: Rap-phr extracellular signalling
Probab=42.40 E-value=23 Score=21.40 Aligned_cols=17 Identities=6% Similarity=0.186 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025095 19 IVFLVMFAGLMSGLTLG 35 (258)
Q Consensus 19 ~~~llllsa~fs~~E~A 35 (258)
.++|+..++.|.+++.|
T Consensus 6 ~l~CLA~aavF~~a~va 22 (37)
T PF11131_consen 6 FLICLAAAAVFTAAGVA 22 (37)
T ss_pred HHHHHHHHHHHHhhccc
Confidence 45789999999999885
No 190
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=39.32 E-value=49 Score=30.78 Aligned_cols=52 Identities=15% Similarity=0.342 Sum_probs=42.9
Q ss_pred cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
-++++...+|+- .-.++...+++. .+-+.+.=.|+.-+||.+++ .+.+|++.
T Consensus 246 ~~~t~ieKVMtk--np~tv~~~tsVA-svaq~MiwE~iem~PVv~~n-~~llGiit 297 (432)
T COG4109 246 KPSTTIEKVMTK--NPITVRAKTSVA-SVAQMMIWEGIEMLPVVDSN-NTLLGIIT 297 (432)
T ss_pred CCCccHHHHhcc--CCeeecccchHH-HHHHHHHhccceeeeEEcCC-ceEEEEEE
Confidence 467788899984 456788889997 88889999999999999864 67999974
No 191
>PRK09334 30S ribosomal protein S25e; Provisional
Probab=36.45 E-value=27 Score=25.54 Aligned_cols=58 Identities=17% Similarity=0.309 Sum_probs=41.8
Q ss_pred CCHhHHHHHHhhhccccccccccc--cccceEEEE-------eCCCCccHHHHHHHHHcC-------Cceeeee
Q 025095 187 LTHDETTIIAGALELTEKTASDAM--TPIAETFAI-------DINAKLDKELMNLILEKG-------HSRVPVY 244 (258)
Q Consensus 187 l~~~E~~mi~~i~~~~~~~v~eiM--~PR~~v~~l-------~~~~~~~~e~~~~~~~~~-------~SR~PVy 244 (258)
-...|++.++|+..|++-+...++ +|+..+++. ..+.++.+.+++.+.+.| |+|.|+|
T Consensus 10 ~~~~~~~~~~n~v~~dk~t~dkl~kEV~~~K~ITps~lserlkI~~SlAr~~Lr~L~~kG~Ik~V~~~~~q~IY 83 (86)
T PRK09334 10 GSKTEKEIKSTIITLDEELLKRVAKEVKKEKIVTPYTLASKYGIKISVAKKVLRELEKRGVLVLYSKNRRTPIY 83 (86)
T ss_pred cccchhhhhhceeecCHHHHHHHHHHhccCcEEcHHHHHHHhcchHHHHHHHHHHHHHCCCEEEEecCCCeEEe
Confidence 455788899999999999999888 787777764 344455555666666655 6666766
No 192
>cd07178 terB_like_YebE tellurium resistance terB-like protein, subgroup 3. This family includes several uncharacterized bacterial proteins including an Escherichia coli protein called YebE. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=36.05 E-value=41 Score=24.81 Aligned_cols=15 Identities=33% Similarity=0.554 Sum_probs=7.9
Q ss_pred CCCCHhHHHHHHhhh
Q 025095 185 GELTHDETTIIAGAL 199 (258)
Q Consensus 185 g~l~~~E~~mi~~i~ 199 (258)
|.++++|+++|...+
T Consensus 14 G~id~~E~~~I~~~~ 28 (95)
T cd07178 14 GHIDEAERARILGEL 28 (95)
T ss_pred CCCCHHHHHHHHHHH
Confidence 555555555555544
No 193
>PRK10329 glutaredoxin-like protein; Provisional
Probab=34.73 E-value=58 Score=23.03 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=23.4
Q ss_pred EEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEE
Q 025095 217 FAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGL 254 (258)
Q Consensus 217 ~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGi 254 (258)
..++.+.. . +..+.+...|+..+||..-+.+.+.|+
T Consensus 29 ~~idi~~~-~-~~~~~~~~~g~~~vPvv~i~~~~~~Gf 64 (81)
T PRK10329 29 EMINVDRV-P-EAAETLRAQGFRQLPVVIAGDLSWSGF 64 (81)
T ss_pred EEEECCCC-H-HHHHHHHHcCCCCcCEEEECCEEEecC
Confidence 34555554 2 566667778999999886544556664
No 194
>PF15284 PAGK: Phage-encoded virulence factor
Probab=33.13 E-value=59 Score=22.11 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 025095 16 IVVIVFLVMFAGLMSGLTLGLMS 38 (258)
Q Consensus 16 l~~~~~llllsa~fs~~E~Al~s 38 (258)
+++.+++++.++.||++-+|--+
T Consensus 7 ifL~l~~~LsA~~FSasamAa~~ 29 (61)
T PF15284_consen 7 IFLALVFILSAAGFSASAMAADS 29 (61)
T ss_pred HHHHHHHHHHHhhhhHHHHHHhh
Confidence 45666778888899999888433
No 195
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=31.18 E-value=50 Score=30.87 Aligned_cols=51 Identities=22% Similarity=0.204 Sum_probs=39.1
Q ss_pred cccccccccccc-eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEE
Q 025095 203 EKTASDAMTPIA-ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLI 255 (258)
Q Consensus 203 ~~~v~eiM~PR~-~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv 255 (258)
.++..|.=.+-- ++..++.++++. ++++.+.+.+.|-+||.+++. +.+|+.
T Consensus 225 ~~s~~dl~ig~~~~i~~i~~~~~v~-~al~~m~~~~is~lpvV~~~g-~~v~~~ 276 (381)
T KOG1764|consen 225 SKSLSDLGIGTWSNIASISEDTPVI-EALKIMSERRISALPVVDENG-KKVGNY 276 (381)
T ss_pred hCCHHHhCcchhhhheeecCCCcHH-HHHHHHHhcCcCcceEEcCCC-ceecce
Confidence 344444444433 599999999997 999999999999999998754 447765
No 196
>TIGR03063 srtB_target sortase B cell surface sorting signal. Two different classes of sorting signal, both analogous to the sortase A signal LPXTG, may be recognized by the sortase SrtB. These are given as NXZTN and NPKXZ. Proteins sorted by this class of sortase are less common than the sortase A and LPXTG system. This model describes a number of cell surface protein C-terminal regions from Gram-positive bacteria that appear to be sortase B (SrtB) sorting signals.
Probab=30.81 E-value=64 Score=18.59 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=9.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHH
Q 025095 7 CCGMGFIIHIVVIVFLVMFAGLM 29 (258)
Q Consensus 7 ~~~~~~~~~l~~~~~llllsa~f 29 (258)
||+++....+.+..++++.|++|
T Consensus 1 NPkT~D~a~i~ly~~l~~~s~~~ 23 (29)
T TIGR03063 1 NPKTGDSAQIGLYAVLFLGSGLF 23 (29)
T ss_pred CCCCccchhHHHHHHHHHHHHHH
Confidence 34555433333333344445554
No 197
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=30.41 E-value=55 Score=23.23 Aligned_cols=47 Identities=23% Similarity=0.316 Sum_probs=37.1
Q ss_pred cccHHHHHHHHHhhcccccCCCCCCHhHHHHHHhhhccccccccccccccceEEEEeCCCC
Q 025095 164 LFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAK 224 (258)
Q Consensus 164 ~~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~ 224 (258)
..|.||+...+.. +-.+| +.+++|.|..=+.+.+|...+-+++....
T Consensus 19 ~~s~dev~~~v~~----Al~~~----------~~~l~LtD~kGr~~lVp~~~iaYVeiG~~ 65 (74)
T PF11305_consen 19 DQSADEVEAAVTD----ALADG----------SGVLTLTDEKGRRVLVPAASIAYVEIGSE 65 (74)
T ss_pred CCCHHHHHHHHHH----HHhCC----------CceEEEEeCCCCEEEEECCcEEEEEEcCC
Confidence 3578999998873 21222 16899999999999999999999998765
No 198
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=30.11 E-value=73 Score=23.63 Aligned_cols=12 Identities=17% Similarity=0.113 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 025095 24 MFAGLMSGLTLG 35 (258)
Q Consensus 24 llsa~fs~~E~A 35 (258)
++..++..+|.|
T Consensus 13 LA~lLlisSeva 24 (95)
T PF07172_consen 13 LAALLLISSEVA 24 (95)
T ss_pred HHHHHHHHhhhh
Confidence 333344444443
No 199
>CHL00038 psbL photosystem II protein L
Probab=27.46 E-value=95 Score=18.86 Aligned_cols=18 Identities=17% Similarity=0.484 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025095 12 FIIHIVVIVFLVMFAGLM 29 (258)
Q Consensus 12 ~~~~l~~~~~llllsa~f 29 (258)
.|-.+++.++.+++|.+|
T Consensus 19 y~GLLlifvl~vlfssyf 36 (38)
T CHL00038 19 YWGLLLIFVLAVLFSNYF 36 (38)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 466666666677777665
No 200
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=26.63 E-value=1.1e+02 Score=18.47 Aligned_cols=18 Identities=17% Similarity=0.484 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025095 12 FIIHIVVIVFLVMFAGLM 29 (258)
Q Consensus 12 ~~~~l~~~~~llllsa~f 29 (258)
.|..+++.++-+++|.+|
T Consensus 18 Y~GLllifvl~vLFssyf 35 (37)
T PF02419_consen 18 YWGLLLIFVLAVLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 466666666667777665
No 201
>PF14163 SieB: Superinfection exclusion protein B
Probab=26.18 E-value=3.3e+02 Score=21.50 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=17.6
Q ss_pred CCCHhHHHHHHhhhccccccccccccccceEEEEeCCCC
Q 025095 186 ELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAK 224 (258)
Q Consensus 186 ~l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~ 224 (258)
.++++|+..+.-.+.=+ +..+.++.+++
T Consensus 78 ~Lt~~EkavL~~~~~~~-----------~~~~~lp~~~~ 105 (151)
T PF14163_consen 78 SLTPEEKAVLREFYIQG-----------NNTLTLPYNNP 105 (151)
T ss_pred hCCHHHHHHHHHHHHCC-----------CCeEEecCCCH
Confidence 37888888887666433 33345666664
No 202
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=25.94 E-value=69 Score=32.77 Aligned_cols=49 Identities=12% Similarity=0.178 Sum_probs=38.3
Q ss_pred ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCc--EEEE
Q 025095 202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTN--IIGL 254 (258)
Q Consensus 202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~--IvGi 254 (258)
....|+++|+ +|+..+..+.|.. |+.+....+..--+|+.++. |+ .+|.
T Consensus 586 h~v~VE~iMV--~dv~yI~k~~Ty~-elre~l~~~~lR~~PlV~s~-esmiLlGS 636 (931)
T KOG0476|consen 586 HTVKVEHIMV--TDVKYITKDTTYR-ELREALQTTTLRSFPLVESK-ESMILLGS 636 (931)
T ss_pred eEEEeeeecc--ccceeeeccCcHH-HHHHHHHhCccceeccccCc-ccceeeeh
Confidence 4567999999 6999999999997 88887777767789998753 44 4554
No 203
>PRK03972 ribosomal biogenesis protein; Validated
Probab=25.75 E-value=1.1e+02 Score=26.27 Aligned_cols=34 Identities=12% Similarity=0.220 Sum_probs=28.7
Q ss_pred CCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 222 NAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 222 ~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+.+++ ++.+...+.||+.+.|..++.++.-|++.
T Consensus 35 k~~lk-el~~~A~~~g~TdLIVV~E~rg~P~~L~i 68 (208)
T PRK03972 35 KKTIQ-DLLMEAYDRGYERLLIINVWKGNPLKMTF 68 (208)
T ss_pred CccHH-HHHHHHHHCCCCeEEEEecCCCcCCeEEE
Confidence 35675 89999999999999999999888877754
No 204
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=25.73 E-value=72 Score=26.81 Aligned_cols=27 Identities=26% Similarity=0.521 Sum_probs=16.0
Q ss_pred HHHHHHhhcccccCCCCCCHhHHHHHHhhhc
Q 025095 170 LKTLVNLHGNEAGKGGELTHDETTIIAGALE 200 (258)
Q Consensus 170 l~~lv~~~~~e~~~~g~l~~~E~~mi~~i~~ 200 (258)
||.||... ...|.|+++|++.|.+.++
T Consensus 83 lrAMIaAA----kADG~ID~~Er~~I~~~l~ 109 (188)
T PF04391_consen 83 LRAMIAAA----KADGHIDEEERQRIEGALQ 109 (188)
T ss_pred HHHHHHHH----HcCCCCCHHHHHHHHHHHH
Confidence 55566532 2337777777777766553
No 205
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=25.57 E-value=1.7e+02 Score=27.54 Aligned_cols=51 Identities=10% Similarity=0.055 Sum_probs=36.6
Q ss_pred ccccccccccce-EEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 204 KTASDAMTPIAE-TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 204 ~~v~eiM~PR~~-v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
.+++++|.+... ....+.+.+.. ++++.+.+.+.++..|.+++ ++..|++.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~ 325 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPR-SALKLLQDEDREYGYVIERG-NKFVGAVS 325 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHH-HHHHHHHhcCCceEEEEcCC-CcEEEEEe
Confidence 567788854322 22334555665 89999999999999999764 68899885
No 206
>KOG3773 consensus Adiponutrin and related vesicular transport proteins; predicted alpha/beta hydrolase [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.38 E-value=4e+02 Score=24.60 Aligned_cols=77 Identities=18% Similarity=0.258 Sum_probs=58.2
Q ss_pred cccHHHHHHHHHhhcccccCCCCCCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeee
Q 025095 164 LFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPV 243 (258)
Q Consensus 164 ~~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PV 243 (258)
..--|-|+..++ ..++++-+++.++=+..+.+.+++. .. +.++.=.+-+ ++++.+..++| +|-
T Consensus 86 f~~~~~l~~~le---------~~LPpda~~la~~rl~iSlTr~~~~----~N-~lis~F~s~~-~liq~L~~scy--iP~ 148 (354)
T KOG3773|consen 86 FNLSDRLRSGLE---------DFLPPDAHWLASGRLHISLTRVKDR----EN-VLISEFPSRD-ELIQALMCSCY--IPM 148 (354)
T ss_pred cCHHHHHHHHHH---------HhCChHHHHHhhcceeEEEEeeeeh----hh-hhhhccccHH-HHHHHHHHhcc--Ccc
Confidence 334577887776 3589999999999999999999887 23 3344445555 89999999999 999
Q ss_pred eeCC-CCcEEEEEEe
Q 025095 244 YYEE-PTNIIGLILV 257 (258)
Q Consensus 244 y~~~-~D~IvGiv~~ 257 (258)
|-+. .-.+.|..|+
T Consensus 149 ysg~~pp~~rg~~yi 163 (354)
T KOG3773|consen 149 YSGLKPPIFRGVRYI 163 (354)
T ss_pred ccCCCCcceeeEEEe
Confidence 9664 4678888775
No 207
>PRK11573 hypothetical protein; Provisional
Probab=24.88 E-value=1.7e+02 Score=27.63 Aligned_cols=40 Identities=18% Similarity=0.130 Sum_probs=31.3
Q ss_pred eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025095 215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256 (258)
Q Consensus 215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~ 256 (258)
+...++.+.+++ ++++.+++++-.=--|.|+ -+.+.|+|.
T Consensus 263 ~~~~Vpe~~~l~-~lL~~~~~~~~~~AiVvDE-yG~~~GiVT 302 (413)
T PRK11573 263 EIYFVPEGTPLS-TQLVKFQRNKKKVGLVVDE-YGDIQGLVT 302 (413)
T ss_pred CCeEeCCCCcHH-HHHHHHHhcCCeEEEEEec-CCCeEEEee
Confidence 467899999997 9999998876555556654 578999985
No 208
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=24.81 E-value=1.7e+02 Score=19.65 Aligned_cols=34 Identities=24% Similarity=0.489 Sum_probs=20.8
Q ss_pred EeCCCCccHHHHHHHHHcCCceeeeeeCC-CCcEEEE
Q 025095 219 IDINAKLDKELMNLILEKGHSRVPVYYEE-PTNIIGL 254 (258)
Q Consensus 219 l~~~~~~~~e~~~~~~~~~~SR~PVy~~~-~D~IvGi 254 (258)
++.+.. . +..+.+.+.|++.+|+.--+ .+.+.|+
T Consensus 29 ~di~~~-~-~~~~~~~~~g~~~vP~v~~~g~~~~~G~ 63 (72)
T TIGR02194 29 INIDEQ-P-EAIDYVKAQGFRQVPVIVADGDLSWSGF 63 (72)
T ss_pred EECCCC-H-HHHHHHHHcCCcccCEEEECCCcEEecc
Confidence 444443 2 45666677899999987543 3346663
No 209
>PF09308 LuxQ-periplasm: LuxQ, periplasmic; InterPro: IPR015387 This entry represents the periplasmic sensor domain of the prokaryotic protein LuxQ, that assumes a structure consisting of two tandem Per/ARNT/Simple-minded (PAS) folds []. ; GO: 0004673 protein histidine kinase activity, 0016791 phosphatase activity; PDB: 2HJ9_C 2HJE_A 1ZHH_B 3C30_A 3C38_A.
Probab=24.74 E-value=79 Score=27.62 Aligned_cols=18 Identities=17% Similarity=0.573 Sum_probs=15.6
Q ss_pred eeeeeeCCCCcEEEEEEe
Q 025095 240 RVPVYYEEPTNIIGLILV 257 (258)
Q Consensus 240 R~PVy~~~~D~IvGiv~~ 257 (258)
|.||.+...++|+|++|.
T Consensus 131 R~pIi~~~tGEVlG~Ly~ 148 (238)
T PF09308_consen 131 RTPIIDPKTGEVLGYLYI 148 (238)
T ss_dssp EEEEE-TTTSBEEEEEEE
T ss_pred ecceeeCCCCeEEEEEEE
Confidence 789999999999999985
No 210
>TIGR00811 sit silicon transporter. Marine diatoms such as Cylindrotheca fusiformis encode at least six silicon transport protein homologues which exhibit similar size and topology. One characterized member of the family (Sit1) functions in the energy-dependent uptake of either Silicic acid [Si(OH)4] or Silicate [Si(OH)3O-] by a Na+ symport mechanism. The system is found in marine diatoms which make their "glass houses" out of silicon.
Probab=24.53 E-value=1.8e+02 Score=28.08 Aligned_cols=35 Identities=17% Similarity=0.427 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Q 025095 11 GFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLE 45 (258)
Q Consensus 11 ~~~~~l~~~~~llllsa~fs~~E~Al~s~~~~rl~ 45 (258)
..|..+++.++++..-|..=|...|++.+.+..-+
T Consensus 256 ~p~vAV~lff~~m~~vGMlEGmQiAffavakl~~e 290 (545)
T TIGR00811 256 PNGVAIVLFILLMSVVGLLEGMQIAFFAVAKIPKA 290 (545)
T ss_pred CccHHHHHHHHHHHHHHHhhhceeEEEEecCCCHH
Confidence 34555666666677778888888999999876655
No 211
>COG3462 Predicted membrane protein [Function unknown]
Probab=23.10 E-value=3e+02 Score=21.11 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=11.6
Q ss_pred CCCCCCHhHHHHHHhh
Q 025095 183 KGGELTHDETTIIAGA 198 (258)
Q Consensus 183 ~~g~l~~~E~~mi~~i 198 (258)
..|++++||.+-+.+-
T Consensus 99 AkGEItEEEY~r~~~~ 114 (117)
T COG3462 99 AKGEITEEEYRRIIRT 114 (117)
T ss_pred hcCCCCHHHHHHHHHH
Confidence 3599999997755543
No 212
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=23.02 E-value=83 Score=23.63 Aligned_cols=17 Identities=35% Similarity=0.694 Sum_probs=11.8
Q ss_pred eeeeeeCCCCcEEEEEEe
Q 025095 240 RVPVYYEEPTNIIGLILV 257 (258)
Q Consensus 240 R~PVy~~~~D~IvGiv~~ 257 (258)
..||++.+ ++++|+|.+
T Consensus 93 ~~PV~d~~-g~viG~V~V 109 (116)
T PF14827_consen 93 FAPVYDSD-GKVIGVVSV 109 (116)
T ss_dssp EEEEE-TT-S-EEEEEEE
T ss_pred EEeeECCC-CcEEEEEEE
Confidence 46999644 799999875
No 213
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=22.49 E-value=61 Score=30.74 Aligned_cols=81 Identities=16% Similarity=0.269 Sum_probs=55.3
Q ss_pred cccHHHHHHHHHhhcccccCCCC-----CCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCC
Q 025095 164 LFRRAELKTLVNLHGNEAGKGGE-----LTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGH 238 (258)
Q Consensus 164 ~~s~eEl~~lv~~~~~e~~~~g~-----l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~ 238 (258)
.+||.|....+...+- -|. =.+++..+++++=.|..--+ +|-+.+..+.++. ++++....+||
T Consensus 72 TVtes~MAiaMAl~gg----Ig~IHhNctpe~QA~~v~~vK~~~~g~~-------~~p~v~sp~~tvg-~v~~~k~~~gF 139 (503)
T KOG2550|consen 72 TVTESEMAIAMALLGG----IGFIHHNCTPEDQADMVRRVKNYENGFI-------NNPIVISPTTTVG-EVKEAKEKHGF 139 (503)
T ss_pred ccchhHHHHHHHhcCC----ceeeecCCCHHHHHHHHHHHHHhhcccc-------cCCcccCCcccch-hhhhhcccccc
Confidence 4677777666543210 011 14566777777776665333 2346688888887 99999999999
Q ss_pred ceeeeeeCCC--CcEEEEEE
Q 025095 239 SRVPVYYEEP--TNIIGLIL 256 (258)
Q Consensus 239 SR~PVy~~~~--D~IvGiv~ 256 (258)
+-+||-++.. ...+|+|.
T Consensus 140 ~g~pvTe~g~~~~KLvG~vt 159 (503)
T KOG2550|consen 140 SGIPVTEDGKRGSKLVGIIT 159 (503)
T ss_pred cccccccCCcccceeEEEEe
Confidence 9999997554 56899874
No 214
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=22.48 E-value=1.2e+02 Score=18.58 Aligned_cols=18 Identities=17% Similarity=0.510 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025095 12 FIIHIVVIVFLVMFAGLM 29 (258)
Q Consensus 12 ~~~~l~~~~~llllsa~f 29 (258)
.|-.+++.++.+++|.+|
T Consensus 20 y~GlLlifvl~vLFssYf 37 (39)
T PRK00753 20 YLGLLLVFVLGILFSSYF 37 (39)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 455566666667777665
No 215
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.20 E-value=3.2e+02 Score=19.17 Aligned_cols=35 Identities=26% Similarity=0.438 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHc
Q 025095 11 GFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKS 50 (258)
Q Consensus 11 ~~~~~l~~~~~llllsa~fs~~E~Al~s~~~~rl~~l~~~ 50 (258)
+.|+.+++++ +.++.|++-| ++-.+|.--+++.++
T Consensus 2 ~l~lail~iv-l~ll~G~~~G----~fiark~~~k~lk~N 36 (71)
T COG3763 2 SLWLAILLIV-LALLAGLIGG----FFIARKQMKKQLKDN 36 (71)
T ss_pred hhHHHHHHHH-HHHHHHHHHH----HHHHHHHHHHHHhhC
Confidence 4576664433 3444555555 444444444445443
Done!