BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025097
         (258 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1,
           An Sa-Induced And Partially Npr1-Dependent Transcription
           Factor
          Length = 76

 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 47/63 (74%), Gaps = 2/63 (3%)

Query: 97  IVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHN 156
           IV DG++WRKYGQK  K +P PR+Y+RCS  S GCPVKK V+R   D   L+ TYEG+H+
Sbjct: 13  IVNDGYRWRKYGQKSVKGSPYPRSYYRCS--SPGCPVKKHVERSSHDTKLLITTYEGKHD 70

Query: 157 HDV 159
           HD+
Sbjct: 71  HDM 73


>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of
           Atwrky4
 pdb|2LEX|A Chain A, Complex Of The C-Terminal Wrky Domain Of Atwrky4 And A
           W-Box Dna
          Length = 78

 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 47/63 (74%), Gaps = 2/63 (3%)

Query: 97  IVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHN 156
           ++ DG++WRKYGQKV K NP PR+Y++C+  + GC V+K V+R   D   +V TYEG+HN
Sbjct: 16  LLDDGYRWRKYGQKVVKGNPYPRSYYKCT--TPGCGVRKHVERAATDPKAVVTTYEGKHN 73

Query: 157 HDV 159
           HD+
Sbjct: 74  HDL 76


>pdb|2PYX|A Chain A, Crystal Structure Of Tryptophan Halogenase (Yp_750003.1)
           From Shewanella Frigidimarina Ncimb 400 At 1.50 A
           Resolution
 pdb|2PYX|B Chain B, Crystal Structure Of Tryptophan Halogenase (Yp_750003.1)
           From Shewanella Frigidimarina Ncimb 400 At 1.50 A
           Resolution
          Length = 526

 Score = 30.0 bits (66), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 16/64 (25%), Positives = 30/64 (46%)

Query: 123 RCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIVH 182
           + S A + C  +   Q  +  KS + A Y  ++N+    ++   S  LT +C+ K  + H
Sbjct: 134 QVSFAEAVCSQQVLTQLGLAPKSIVTAQYHFQNNYGYHLNAAKFSQLLTEHCTQKLGVTH 193

Query: 183 CPDY 186
             D+
Sbjct: 194 IRDH 197


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.127    0.374 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,388,987
Number of Sequences: 62578
Number of extensions: 272553
Number of successful extensions: 544
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 537
Number of HSP's gapped (non-prelim): 8
length of query: 258
length of database: 14,973,337
effective HSP length: 97
effective length of query: 161
effective length of database: 8,903,271
effective search space: 1433426631
effective search space used: 1433426631
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)