Query 025097
Match_columns 258
No_of_seqs 238 out of 741
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 02:39:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025097.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025097hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03106 WRKY: WRKY DNA -bindi 100.0 5.9E-33 1.3E-37 203.5 3.3 59 98-158 1-59 (60)
2 smart00774 WRKY DNA binding do 100.0 6.9E-32 1.5E-36 197.9 5.0 59 98-157 1-59 (59)
3 PF04500 FLYWCH: FLYWCH zinc f 95.8 0.009 1.9E-07 41.4 2.8 52 96-157 10-62 (62)
4 PF03101 FAR1: FAR1 DNA-bindin 91.4 0.29 6.3E-06 36.8 3.9 31 129-160 60-90 (91)
5 COG4026 Uncharacterized protei 90.2 0.69 1.5E-05 43.2 5.9 43 9-51 163-205 (290)
6 PF00170 bZIP_1: bZIP transcri 88.4 2.4 5.1E-05 30.8 6.5 40 7-46 24-63 (64)
7 PHA03162 hypothetical protein; 85.9 0.97 2.1E-05 38.7 3.7 30 4-33 8-37 (135)
8 PHA03155 hypothetical protein; 85.1 1.2 2.7E-05 37.2 3.9 33 1-34 1-33 (115)
9 PF04201 TPD52: Tumour protein 84.4 3.1 6.6E-05 36.7 6.2 40 7-46 27-66 (162)
10 PF08650 DASH_Dad4: DASH compl 83.2 1.9 4.2E-05 33.3 4.0 39 7-46 23-62 (72)
11 PF05377 FlaC_arch: Flagella a 81.0 10 0.00022 28.0 6.9 44 8-52 6-49 (55)
12 smart00338 BRLZ basic region l 80.9 6.9 0.00015 28.3 6.0 40 7-46 24-63 (65)
13 PF05812 Herpes_BLRF2: Herpesv 80.8 2.8 6.1E-05 35.2 4.4 28 7-34 1-28 (118)
14 KOG4196 bZIP transcription fac 80.4 5.2 0.00011 34.3 5.9 36 12-47 84-119 (135)
15 TIGR02894 DNA_bind_RsfA transc 78.4 8.4 0.00018 34.0 6.8 39 9-47 111-149 (161)
16 PF06005 DUF904: Protein of un 78.0 13 0.00029 28.4 7.0 42 11-52 20-68 (72)
17 PF06295 DUF1043: Protein of u 76.2 11 0.00024 31.3 6.6 42 9-50 32-77 (128)
18 PRK11677 hypothetical protein; 76.0 11 0.00023 32.1 6.6 40 9-48 36-79 (134)
19 KOG4010 Coiled-coil protein TP 72.1 12 0.00025 34.2 6.1 39 8-46 43-81 (208)
20 PRK00888 ftsB cell division pr 72.0 10 0.00022 30.7 5.2 37 7-43 32-68 (105)
21 PF07544 Med9: RNA polymerase 70.1 7 0.00015 30.2 3.8 37 2-38 45-81 (83)
22 PF03127 GAT: GAT domain; Int 68.6 23 0.0005 27.7 6.5 46 8-53 3-64 (100)
23 PRK04325 hypothetical protein; 67.5 31 0.00068 26.3 6.9 50 1-50 1-50 (74)
24 PF15294 Leu_zip: Leucine zipp 67.2 16 0.00035 34.7 6.3 41 11-51 127-174 (278)
25 TIGR03689 pup_AAA proteasome A 67.0 12 0.00027 38.0 5.8 43 10-52 2-44 (512)
26 PF07795 DUF1635: Protein of u 66.5 21 0.00045 32.8 6.6 37 14-50 24-60 (214)
27 PF04977 DivIC: Septum formati 66.3 12 0.00026 27.2 4.3 30 7-36 22-51 (80)
28 PF06696 Strep_SA_rep: Strepto 66.2 13 0.00027 23.5 3.6 21 8-28 4-24 (25)
29 PF13094 CENP-Q: CENP-Q, a CEN 65.6 28 0.00061 29.3 6.9 44 9-52 41-84 (160)
30 PF07716 bZIP_2: Basic region 64.4 17 0.00036 25.7 4.5 30 7-36 23-52 (54)
31 TIGR02449 conserved hypothetic 61.9 50 0.0011 25.1 6.9 38 8-45 6-43 (65)
32 PF05377 FlaC_arch: Flagella a 61.7 18 0.00039 26.7 4.3 42 4-45 9-50 (55)
33 COG1792 MreC Cell shape-determ 61.6 8.7 0.00019 36.0 3.4 9 131-139 178-186 (284)
34 TIGR00219 mreC rod shape-deter 61.2 10 0.00022 35.5 3.7 21 16-36 66-86 (283)
35 PF11221 Med21: Subunit 21 of 61.0 27 0.00058 29.4 6.0 50 2-51 90-139 (144)
36 PF08826 DMPK_coil: DMPK coile 58.7 52 0.0011 24.6 6.4 38 12-49 14-51 (61)
37 PF01920 Prefoldin_2: Prefoldi 58.6 23 0.0005 27.0 4.8 45 7-51 60-104 (106)
38 TIGR02338 gimC_beta prefoldin, 57.5 51 0.0011 26.3 6.7 45 7-51 65-109 (110)
39 PF09755 DUF2046: Uncharacteri 57.1 32 0.00069 33.3 6.4 41 9-49 254-294 (310)
40 PRK13923 putative spore coat p 57.1 42 0.0009 29.9 6.7 40 9-48 111-150 (170)
41 PF07412 Geminin: Geminin; In 56.5 11 0.00024 34.3 3.0 26 10-35 133-158 (200)
42 PRK13922 rod shape-determining 56.3 14 0.0003 33.6 3.7 22 12-33 72-93 (276)
43 PF06657 Cep57_MT_bd: Centroso 55.4 48 0.0011 25.6 6.1 41 11-51 19-64 (79)
44 PF13851 GAS: Growth-arrest sp 54.4 42 0.00092 29.9 6.4 42 10-51 42-83 (201)
45 PLN03097 FHY3 Protein FAR-RED 52.8 18 0.0004 39.0 4.4 32 129-161 159-190 (846)
46 PRK10884 SH3 domain-containing 52.2 52 0.0011 29.7 6.6 14 8-21 99-112 (206)
47 PF02183 HALZ: Homeobox associ 51.7 36 0.00077 23.8 4.4 27 11-37 14-40 (45)
48 COG4026 Uncharacterized protei 51.5 52 0.0011 31.1 6.6 44 7-50 133-176 (290)
49 PF13815 Dzip-like_N: Iguana/D 51.1 51 0.0011 26.8 5.9 36 9-44 80-115 (118)
50 KOG4005 Transcription factor X 50.9 49 0.0011 31.4 6.4 41 7-47 95-135 (292)
51 PF06156 DUF972: Protein of un 49.3 53 0.0012 26.8 5.7 21 10-30 23-43 (107)
52 TIGR03752 conj_TIGR03752 integ 47.9 59 0.0013 33.2 6.9 23 10-32 74-96 (472)
53 TIGR02894 DNA_bind_RsfA transc 47.6 84 0.0018 27.8 7.0 34 11-44 106-139 (161)
54 PRK14127 cell division protein 47.2 71 0.0015 26.4 6.2 39 11-49 32-70 (109)
55 PF13118 DUF3972: Protein of u 47.2 60 0.0013 27.7 5.8 29 12-40 81-109 (126)
56 PF11365 DUF3166: Protein of u 46.7 45 0.00099 27.1 4.8 32 8-39 14-45 (96)
57 PF14775 NYD-SP28_assoc: Sperm 46.2 39 0.00084 24.9 4.0 24 11-34 35-58 (60)
58 PRK13169 DNA replication intia 46.0 39 0.00084 27.9 4.4 21 10-30 23-43 (110)
59 PRK10884 SH3 domain-containing 45.6 48 0.001 29.9 5.3 25 20-44 136-160 (206)
60 PF07106 TBPIP: Tat binding pr 45.4 85 0.0018 26.6 6.6 26 8-33 78-103 (169)
61 PF11932 DUF3450: Protein of u 45.2 83 0.0018 28.4 6.9 43 9-51 56-98 (251)
62 KOG1962 B-cell receptor-associ 45.0 56 0.0012 30.1 5.7 43 8-50 150-192 (216)
63 PF10168 Nup88: Nuclear pore c 44.8 65 0.0014 34.2 6.9 45 8-52 578-622 (717)
64 PF03112 DUF244: Uncharacteriz 44.2 44 0.00096 29.4 4.7 21 9-29 77-97 (158)
65 PF03980 Nnf1: Nnf1 ; InterPr 43.9 33 0.00072 27.1 3.7 32 4-35 75-106 (109)
66 PRK09343 prefoldin subunit bet 43.5 1.2E+02 0.0025 25.0 6.9 47 7-53 69-115 (121)
67 PF11577 NEMO: NF-kappa-B esse 43.1 60 0.0013 24.8 4.7 32 13-44 3-38 (68)
68 PF07875 Coat_F: Coat F domain 42.7 45 0.00097 24.0 3.9 31 23-53 27-57 (64)
69 PRK14127 cell division protein 42.2 57 0.0012 27.0 4.8 33 10-42 38-70 (109)
70 PF04111 APG6: Autophagy prote 41.3 88 0.0019 29.7 6.7 15 36-50 98-112 (314)
71 PRK14160 heat shock protein Gr 40.9 91 0.002 28.5 6.4 44 7-50 52-95 (211)
72 COG3352 FlaC Putative archaeal 40.4 1.1E+02 0.0023 27.1 6.5 45 4-48 67-111 (157)
73 PF14645 Chibby: Chibby family 40.4 91 0.002 25.8 5.8 39 7-45 69-114 (116)
74 PRK13729 conjugal transfer pil 40.4 63 0.0014 33.0 5.8 38 10-47 84-121 (475)
75 PRK14148 heat shock protein Gr 40.2 1.1E+02 0.0023 27.7 6.6 40 8-47 39-78 (195)
76 PF11544 Spc42p: Spindle pole 40.2 1.5E+02 0.0032 23.4 6.6 40 10-49 6-48 (76)
77 TIGR02209 ftsL_broad cell divi 40.0 54 0.0012 24.4 4.1 30 8-37 30-59 (85)
78 PF03859 CG-1: CG-1 domain; I 39.8 11 0.00024 31.8 0.3 9 98-106 51-59 (118)
79 PF08614 ATG16: Autophagy prot 39.6 1.3E+02 0.0029 26.1 7.1 37 13-49 127-163 (194)
80 KOG0288 WD40 repeat protein Ti 39.5 74 0.0016 32.3 6.0 26 10-35 49-74 (459)
81 PF15233 SYCE1: Synaptonemal c 39.4 86 0.0019 27.1 5.6 38 12-49 37-74 (134)
82 PF07407 Seadorna_VP6: Seadorn 39.3 67 0.0014 31.9 5.6 29 9-37 32-60 (420)
83 PRK15422 septal ring assembly 39.3 1.2E+02 0.0025 24.1 5.9 38 9-46 18-55 (79)
84 PF12329 TMF_DNA_bd: TATA elem 39.1 1.4E+02 0.0031 22.6 6.3 45 5-49 8-52 (74)
85 cd00632 Prefoldin_beta Prefold 38.3 1.5E+02 0.0033 23.3 6.7 44 7-50 61-104 (105)
86 PF09789 DUF2353: Uncharacteri 38.0 90 0.002 30.3 6.2 47 5-51 5-51 (319)
87 COG2770 ResE FOG: HAMP domain 37.6 44 0.00095 25.3 3.3 30 3-32 52-82 (83)
88 PF06156 DUF972: Protein of un 37.5 95 0.0021 25.4 5.4 35 10-44 9-43 (107)
89 PF15079 DUF4546: Domain of un 37.1 99 0.0021 28.0 5.9 38 12-50 50-91 (205)
90 KOG1510 RNA polymerase II holo 36.8 1.1E+02 0.0024 26.5 6.0 48 2-49 77-124 (139)
91 TIGR00219 mreC rod shape-deter 36.6 76 0.0017 29.7 5.4 23 11-33 68-90 (283)
92 KOG0804 Cytoplasmic Zn-finger 36.3 1.1E+02 0.0023 31.4 6.6 43 9-51 389-449 (493)
93 PF04111 APG6: Autophagy prote 35.9 1.4E+02 0.003 28.4 7.1 42 8-49 42-83 (314)
94 PF10805 DUF2730: Protein of u 35.9 1.3E+02 0.0029 24.1 6.0 42 8-49 48-91 (106)
95 PF10224 DUF2205: Predicted co 35.8 1.3E+02 0.0027 23.7 5.6 35 12-53 33-67 (80)
96 PF15058 Speriolin_N: Sperioli 35.6 63 0.0014 29.5 4.5 39 11-50 7-45 (200)
97 PF12325 TMF_TATA_bd: TATA ele 35.5 1.2E+02 0.0026 25.3 5.8 10 11-20 32-41 (120)
98 PRK13169 DNA replication intia 35.4 1.1E+02 0.0023 25.4 5.4 34 10-43 9-42 (110)
99 PF10805 DUF2730: Protein of u 35.1 1.2E+02 0.0025 24.5 5.5 34 2-36 59-92 (106)
100 TIGR03752 conj_TIGR03752 integ 34.1 1.1E+02 0.0024 31.3 6.4 28 10-37 67-94 (472)
101 PRK13922 rod shape-determining 33.9 1.1E+02 0.0025 27.7 6.0 21 16-36 69-89 (276)
102 PF04999 FtsL: Cell division p 33.8 72 0.0016 24.5 4.0 27 10-36 43-69 (97)
103 PF07526 POX: Associated with 33.6 1.2E+02 0.0026 25.9 5.6 36 16-51 70-105 (140)
104 COG1730 GIM5 Predicted prefold 33.2 1.7E+02 0.0036 25.3 6.5 48 6-53 91-138 (145)
105 PF00170 bZIP_1: bZIP transcri 32.9 1.4E+02 0.003 21.5 5.1 34 16-49 26-59 (64)
106 PF10211 Ax_dynein_light: Axon 32.8 1.9E+02 0.0041 25.5 7.0 41 11-51 122-162 (189)
107 cd00890 Prefoldin Prefoldin is 32.7 1.9E+02 0.0041 22.7 6.4 43 7-49 85-127 (129)
108 PF15035 Rootletin: Ciliary ro 32.5 1.4E+02 0.003 26.5 6.1 35 13-47 85-119 (182)
109 PRK14139 heat shock protein Gr 32.5 1.5E+02 0.0032 26.6 6.3 40 8-47 31-70 (185)
110 PF14662 CCDC155: Coiled-coil 32.1 1.3E+02 0.0029 27.3 6.0 35 8-42 94-128 (193)
111 PF04888 SseC: Secretion syste 32.0 1.8E+02 0.0039 26.8 7.0 44 8-51 243-286 (306)
112 PRK10803 tol-pal system protei 32.0 1.6E+02 0.0034 27.2 6.6 43 9-51 61-103 (263)
113 PRK03947 prefoldin subunit alp 31.6 2.3E+02 0.0049 23.2 6.9 46 7-52 92-137 (140)
114 PF09730 BicD: Microtubule-ass 31.3 1.3E+02 0.0029 32.2 6.6 42 8-49 40-81 (717)
115 PRK14158 heat shock protein Gr 31.3 1.9E+02 0.0041 26.1 6.8 41 7-47 38-78 (194)
116 smart00574 POX domain associat 31.2 1.4E+02 0.0031 25.9 5.7 36 16-51 70-105 (140)
117 PRK05771 V-type ATP synthase s 31.1 1.6E+02 0.0034 30.4 7.0 45 7-51 213-257 (646)
118 PF02996 Prefoldin: Prefoldin 31.1 2.2E+02 0.0047 22.2 6.5 44 8-51 76-119 (120)
119 PF01166 TSC22: TSC-22/dip/bun 31.1 86 0.0019 23.6 3.8 21 9-29 14-34 (59)
120 PF10473 CENP-F_leu_zip: Leuci 30.5 2.1E+02 0.0046 24.6 6.6 29 14-42 71-99 (140)
121 PF04420 CHD5: CHD5-like prote 30.2 1.7E+02 0.0038 25.0 6.2 39 7-45 38-88 (161)
122 PRK14143 heat shock protein Gr 30.1 1.8E+02 0.0039 26.9 6.6 41 7-47 65-105 (238)
123 PF04012 PspA_IM30: PspA/IM30 29.6 2.3E+02 0.0049 24.8 7.0 45 8-52 97-141 (221)
124 KOG0673 Thymidylate synthase [ 29.4 22 0.00048 33.7 0.6 32 96-127 111-163 (293)
125 PF12808 Mto2_bdg: Micro-tubul 29.3 99 0.0021 22.6 3.8 24 12-35 25-48 (52)
126 PF04849 HAP1_N: HAP1 N-termin 29.1 1.6E+02 0.0035 28.5 6.3 37 13-49 245-281 (306)
127 PF12107 VEK-30: Plasminogen ( 28.7 50 0.0011 19.2 1.7 11 15-25 2-12 (17)
128 PHA02557 22 prohead core prote 28.6 57 0.0012 31.1 3.1 34 2-35 141-174 (271)
129 PF05064 Nsp1_C: Nsp1-like C-t 28.4 1.7E+02 0.0037 23.8 5.6 40 8-47 56-95 (116)
130 PF13851 GAS: Growth-arrest sp 28.2 2.5E+02 0.0054 25.0 7.0 43 9-51 93-135 (201)
131 PF12711 Kinesin-relat_1: Kine 27.9 1.7E+02 0.0038 23.3 5.3 22 18-39 46-67 (86)
132 PRK14163 heat shock protein Gr 27.9 2.2E+02 0.0048 26.1 6.7 42 7-48 38-79 (214)
133 PF14645 Chibby: Chibby family 27.8 1.5E+02 0.0031 24.6 5.1 31 12-42 67-97 (116)
134 COG3105 Uncharacterized protei 27.7 2.5E+02 0.0054 24.4 6.5 40 10-49 42-85 (138)
135 PF12325 TMF_TATA_bd: TATA ele 27.5 2.5E+02 0.0055 23.4 6.5 42 11-52 18-59 (120)
136 PF08781 DP: Transcription fac 27.2 2.6E+02 0.0057 24.2 6.7 38 10-47 2-39 (142)
137 PF11559 ADIP: Afadin- and alp 27.1 2.7E+02 0.0058 23.0 6.7 36 12-47 55-90 (151)
138 PRK14147 heat shock protein Gr 26.6 1.9E+02 0.0041 25.4 5.8 43 5-47 14-56 (172)
139 PF06005 DUF904: Protein of un 26.5 2.9E+02 0.0064 21.0 6.6 20 12-31 14-33 (72)
140 PF10174 Cast: RIM-binding pro 26.4 1.2E+02 0.0027 32.7 5.5 43 5-47 360-402 (775)
141 PF11932 DUF3450: Protein of u 26.3 2.6E+02 0.0057 25.2 6.9 43 9-51 49-91 (251)
142 PRK09413 IS2 repressor TnpA; R 26.2 1.2E+02 0.0025 24.5 4.2 23 11-33 73-95 (121)
143 PF12709 Kinetocho_Slk19: Cent 26.1 2.2E+02 0.0047 22.9 5.6 30 9-38 49-78 (87)
144 COG5509 Uncharacterized small 26.1 1.1E+02 0.0024 23.4 3.6 20 8-27 31-50 (65)
145 PRK01203 prefoldin subunit alp 25.9 2.7E+02 0.0058 23.7 6.4 42 7-50 85-126 (130)
146 PF05565 Sipho_Gp157: Siphovir 25.9 2.5E+02 0.0055 24.0 6.4 42 12-53 50-91 (162)
147 PF07106 TBPIP: Tat binding pr 25.8 1.8E+02 0.0038 24.7 5.4 34 10-43 73-106 (169)
148 PF10146 zf-C4H2: Zinc finger- 25.7 2.6E+02 0.0056 25.8 6.8 37 11-47 34-70 (230)
149 smart00787 Spc7 Spc7 kinetocho 25.6 2.5E+02 0.0054 26.9 6.9 44 9-52 151-194 (312)
150 PF08285 DPM3: Dolichol-phosph 25.4 1E+02 0.0022 24.6 3.6 25 3-27 62-86 (91)
151 PF01486 K-box: K-box region; 25.1 1.1E+02 0.0024 23.9 3.7 25 9-33 75-99 (100)
152 PF05384 DegS: Sensor protein 25.0 2.9E+02 0.0063 24.1 6.7 41 10-50 28-68 (159)
153 PF07160 DUF1395: Protein of u 24.9 2.3E+02 0.0049 26.1 6.3 39 7-45 34-72 (243)
154 PF10226 DUF2216: Uncharacteri 24.8 95 0.002 28.3 3.7 23 10-32 56-78 (195)
155 PF11594 Med28: Mediator compl 24.7 2.5E+02 0.0054 23.3 5.8 38 8-45 41-78 (106)
156 PRK03947 prefoldin subunit alp 24.4 2.3E+02 0.005 23.1 5.7 36 7-42 4-39 (140)
157 PF13747 DUF4164: Domain of un 24.3 2E+02 0.0043 22.6 5.1 35 10-44 33-67 (89)
158 PF12711 Kinesin-relat_1: Kine 24.0 2E+02 0.0044 22.9 5.0 23 10-32 45-67 (86)
159 PRK14162 heat shock protein Gr 24.0 2.6E+02 0.0056 25.2 6.3 38 10-47 40-77 (194)
160 PF15369 KIAA1328: Uncharacter 23.9 2.3E+02 0.0051 27.7 6.4 33 4-36 3-35 (328)
161 PRK14155 heat shock protein Gr 23.8 1.8E+02 0.0039 26.4 5.4 43 7-49 11-53 (208)
162 COG3074 Uncharacterized protei 23.6 3.4E+02 0.0074 21.4 6.1 34 10-43 19-52 (79)
163 PRK14161 heat shock protein Gr 23.6 2.5E+02 0.0055 24.8 6.1 37 11-47 21-57 (178)
164 PF03670 UPF0184: Uncharacteri 23.5 2.8E+02 0.0061 22.1 5.7 40 14-53 24-63 (83)
165 PF10198 Ada3: Histone acetylt 23.3 2.3E+02 0.005 23.9 5.6 30 10-39 41-70 (131)
166 PF04340 DUF484: Protein of un 23.0 3.2E+02 0.007 24.1 6.7 27 10-36 41-67 (225)
167 KOG2751 Beclin-like protein [S 23.0 2.1E+02 0.0045 29.2 6.0 42 10-51 177-218 (447)
168 PF08651 DASH_Duo1: DASH compl 23.0 2.9E+02 0.0062 21.4 5.6 23 13-35 2-24 (78)
169 KOG3894 SNARE protein Syntaxin 22.9 2E+02 0.0044 28.1 5.7 37 16-52 211-247 (316)
170 KOG4673 Transcription factor T 22.8 2.3E+02 0.0051 30.9 6.5 45 8-52 879-926 (961)
171 PF08317 Spc7: Spc7 kinetochor 22.7 2.9E+02 0.0064 26.0 6.8 31 9-39 209-239 (325)
172 PF12777 MT: Microtubule-bindi 22.7 1.1E+02 0.0023 29.2 3.9 32 11-42 230-261 (344)
173 PF03962 Mnd1: Mnd1 family; I 22.5 3E+02 0.0065 24.3 6.4 24 24-47 143-166 (188)
174 PF14662 CCDC155: Coiled-coil 22.4 3.1E+02 0.0067 25.0 6.5 38 9-46 22-59 (193)
175 PTZ00454 26S protease regulato 22.2 3.4E+02 0.0073 26.6 7.3 41 6-46 12-52 (398)
176 PF15066 CAGE1: Cancer-associa 22.0 2.6E+02 0.0055 29.0 6.5 42 12-53 400-441 (527)
177 COG3879 Uncharacterized protei 22.0 3E+02 0.0065 25.9 6.5 40 10-49 58-101 (247)
178 PF09457 RBD-FIP: FIP domain ; 21.9 1.9E+02 0.0042 20.6 4.1 24 12-35 3-33 (48)
179 PF09726 Macoilin: Transmembra 21.8 2.3E+02 0.005 30.2 6.4 42 10-51 426-481 (697)
180 PRK10698 phage shock protein P 21.8 3.7E+02 0.0079 24.3 6.9 45 9-53 99-143 (222)
181 PRK14160 heat shock protein Gr 21.7 3.3E+02 0.0072 24.9 6.6 41 8-48 60-100 (211)
182 PF03962 Mnd1: Mnd1 family; I 21.5 3.8E+02 0.0082 23.7 6.8 26 8-33 68-93 (188)
183 PF04822 Takusan: Takusan; In 21.5 2.5E+02 0.0055 22.2 5.1 42 9-50 19-69 (84)
184 smart00340 HALZ homeobox assoc 21.5 2.2E+02 0.0048 20.3 4.2 24 12-35 8-31 (44)
185 KOG4005 Transcription factor X 21.4 2.7E+02 0.0058 26.6 6.1 26 5-30 86-111 (292)
186 PF13600 DUF4140: N-terminal d 21.4 2.7E+02 0.0059 21.5 5.3 29 7-35 68-96 (104)
187 PF05531 NPV_P10: Nucleopolyhe 21.4 2.7E+02 0.006 21.7 5.2 44 8-51 17-63 (75)
188 PRK09413 IS2 repressor TnpA; R 21.3 2.3E+02 0.0049 22.8 5.0 24 9-32 78-101 (121)
189 PF04880 NUDE_C: NUDE protein, 21.2 44 0.00096 29.5 0.9 7 12-18 17-23 (166)
190 PF09728 Taxilin: Myosin-like 21.1 2.6E+02 0.0055 26.7 6.0 41 11-51 52-92 (309)
191 PF13874 Nup54: Nucleoporin co 21.1 4.6E+02 0.0099 21.8 6.9 47 7-53 42-95 (141)
192 KOG4191 Histone acetyltransfer 21.1 1.5E+02 0.0033 30.5 4.6 29 10-38 409-437 (516)
193 TIGR00293 prefoldin, archaeal 21.1 4E+02 0.0086 21.2 6.4 40 8-47 85-124 (126)
194 COG4467 Regulator of replicati 20.9 96 0.0021 26.1 2.7 35 10-44 9-43 (114)
195 KOG2129 Uncharacterized conser 20.9 2.4E+02 0.0053 29.0 6.0 38 9-46 278-315 (552)
196 PF13935 Ead_Ea22: Ead/Ea22-li 20.9 3.1E+02 0.0067 22.9 5.9 38 12-49 70-109 (139)
197 PRK14154 heat shock protein Gr 20.9 2.8E+02 0.0062 25.3 6.0 38 10-47 53-90 (208)
198 PHA02047 phage lambda Rz1-like 20.8 2.7E+02 0.0059 23.0 5.3 36 18-53 29-64 (101)
199 KOG2010 Double stranded RNA bi 20.8 3.2E+02 0.0069 27.3 6.6 44 8-51 153-196 (405)
200 PF14988 DUF4515: Domain of un 20.8 3.3E+02 0.0072 24.5 6.4 39 12-50 152-190 (206)
201 PRK04778 septation ring format 20.8 2.7E+02 0.0059 28.4 6.5 42 8-49 118-159 (569)
202 PF08647 BRE1: BRE1 E3 ubiquit 20.6 2.7E+02 0.0057 21.9 5.1 36 15-50 2-37 (96)
203 PTZ00454 26S protease regulato 20.5 3.2E+02 0.007 26.8 6.7 44 8-51 21-64 (398)
204 KOG0804 Cytoplasmic Zn-finger 20.5 2.5E+02 0.0053 29.0 6.0 47 7-53 380-426 (493)
205 COG1842 PspA Phage shock prote 20.3 4E+02 0.0087 24.4 6.9 45 8-52 98-142 (225)
206 PF02370 M: M protein repeat; 20.2 1.8E+02 0.0039 17.7 3.1 18 12-29 4-21 (21)
207 PF14282 FlxA: FlxA-like prote 20.2 3.2E+02 0.0069 21.9 5.6 41 11-51 28-72 (106)
208 PF06160 EzrA: Septation ring 20.2 2.9E+02 0.0064 28.2 6.6 42 8-49 114-155 (560)
209 PF08317 Spc7: Spc7 kinetochor 20.2 3.9E+02 0.0084 25.2 7.0 44 8-51 155-198 (325)
No 1
>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif. The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.
Probab=99.97 E-value=5.9e-33 Score=203.51 Aligned_cols=59 Identities=56% Similarity=1.141 Sum_probs=52.2
Q ss_pred ccCCccccccCccccCCCCCCcceeecccCCCCCcccccceeecCCCcEEEEEeccccCCC
Q 025097 98 VKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHD 158 (258)
Q Consensus 98 ~~DGy~WRKYGQK~ikgn~~PRsYYRCs~~~~gC~akK~VQr~~~D~~~~~~tY~G~HnH~ 158 (258)
++|||+|||||||.|+|+++||+||||++. +|+|+|+|||+.+|+.+++|||+|+|||+
T Consensus 1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~--~C~akK~Vqr~~~d~~~~~vtY~G~H~h~ 59 (60)
T PF03106_consen 1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHP--GCPAKKQVQRSADDPNIVIVTYEGEHNHP 59 (60)
T ss_dssp --SSS-EEEEEEEEETTTTCEEEEEEEECT--TEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred CCCCCchhhccCcccCCCceeeEeeecccc--ChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence 589999999999999999999999999997 79999999999999999999999999997
No 2
>smart00774 WRKY DNA binding domain. The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.
Probab=99.97 E-value=6.9e-32 Score=197.90 Aligned_cols=59 Identities=59% Similarity=1.133 Sum_probs=56.1
Q ss_pred ccCCccccccCccccCCCCCCcceeecccCCCCCcccccceeecCCCcEEEEEeccccCC
Q 025097 98 VKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNH 157 (258)
Q Consensus 98 ~~DGy~WRKYGQK~ikgn~~PRsYYRCs~~~~gC~akK~VQr~~~D~~~~~~tY~G~HnH 157 (258)
++|||+|||||||.|+|+++||+||||++.+ ||+|+|+|||+++|+.+++|||+|+|||
T Consensus 1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~-~C~a~K~Vq~~~~d~~~~~vtY~g~H~h 59 (59)
T smart00774 1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQ-GCPAKKQVQRSDDDPSVVEVTYEGEHTH 59 (59)
T ss_pred CCCcccccccCcEecCCCcCcceEEeccccC-CCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence 4799999999999999999999999999943 6999999999999999999999999998
No 3
>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.
Probab=95.76 E-value=0.009 Score=41.44 Aligned_cols=52 Identities=33% Similarity=0.569 Sum_probs=28.3
Q ss_pred ccccCCccccccCccccCCCCCCcceeecccCCC-CCcccccceeecCCCcEEEEEeccccCC
Q 025097 96 LIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASS-GCPVKKKVQRCMEDKSFLVATYEGEHNH 157 (258)
Q Consensus 96 ~~~~DGy~WRKYGQK~ikgn~~PRsYYRCs~~~~-gC~akK~VQr~~~D~~~~~~tY~G~HnH 157 (258)
.++-|||.-.++... ....|+||+.... +|+|+-.+. .++. .+. ...++|||
T Consensus 10 ~L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~~-~~~-~~~~~HnH 62 (62)
T PF04500_consen 10 KLVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGDG-RVV-RTNGEHNH 62 (62)
T ss_dssp EEEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----TT-EEE-E-S---SS
T ss_pred EEEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCCC-EEE-ECCCccCC
Confidence 467899987766655 3468999998753 799987777 3344 333 44499998
No 4
>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants. It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.
Probab=91.43 E-value=0.29 Score=36.78 Aligned_cols=31 Identities=32% Similarity=0.581 Sum_probs=26.7
Q ss_pred CCCcccccceeecCCCcEEEEEeccccCCCCC
Q 025097 129 SGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQ 160 (258)
Q Consensus 129 ~gC~akK~VQr~~~D~~~~~~tY~G~HnH~~p 160 (258)
.||+|+=.|-+.. |....++.+..+|||+.-
T Consensus 60 tgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L~ 90 (91)
T PF03101_consen 60 TGCKARINVKRRK-DGKWRVTSFVLEHNHPLC 90 (91)
T ss_pred cCCCEEEEEEEcc-CCEEEEEECcCCcCCCCC
Confidence 3799999998876 778889999999999974
No 5
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=90.21 E-value=0.69 Score=43.18 Aligned_cols=43 Identities=21% Similarity=0.355 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 51 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 51 (258)
-+++.++++|.++..||-+|.+|+..+...|..|..+|.++-.
T Consensus 163 ~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~ 205 (290)
T COG4026 163 AEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence 3556778888888889999999999999999999999988854
No 6
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=88.37 E-value=2.4 Score=30.77 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=35.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARI 46 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l 46 (258)
+...++.|+.++..+..||..|..-+..+...+..|...+
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 24 KKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4567889999999999999999999999999999998764
No 7
>PHA03162 hypothetical protein; Provisional
Probab=85.85 E-value=0.97 Score=38.70 Aligned_cols=30 Identities=20% Similarity=0.343 Sum_probs=27.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 4 HNSPKEKMKLLQAKLEHVRKQNENLRHLVK 33 (258)
Q Consensus 4 ~~~~eee~~~L~~EL~rv~eEN~rL~~mL~ 33 (258)
-|++...++.|++||.+++-||+.|+.-|.
T Consensus 8 ~pk~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 8 CPKAQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888999999999999999999998873
No 8
>PHA03155 hypothetical protein; Provisional
Probab=85.12 E-value=1.2 Score=37.18 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=26.7
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 1 MDSHNSPKEKMKLLQAKLEHVRKQNENLRHLVKA 34 (258)
Q Consensus 1 ~~~~~~~eee~~~L~~EL~rv~eEN~rL~~mL~~ 34 (258)
|++-| .+..++.|++||.|++-||+.|+.-|.+
T Consensus 1 mas~~-~~~tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 1 MASGR-ACADVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44444 4566899999999999999999988753
No 9
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=84.39 E-value=3.1 Score=36.71 Aligned_cols=40 Identities=23% Similarity=0.491 Sum_probs=36.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARI 46 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l 46 (258)
.+++-+.|+.||.+|.+|-..|+..|.+-...+..|+..|
T Consensus 27 sEeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 27 SEEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 5778899999999999999999999999988888888875
No 10
>PF08650 DASH_Dad4: DASH complex subunit Dad4; InterPro: IPR013959 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=83.17 E-value=1.9 Score=33.29 Aligned_cols=39 Identities=23% Similarity=0.362 Sum_probs=32.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCND-LLARI 46 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~-Lq~~l 46 (258)
..+.+..|-.+|+++...|..| +++.+|+++|.. .+-+|
T Consensus 23 LNEsv~~lN~~l~eIn~~N~~l-e~~~qm~enY~~nv~fnL 62 (72)
T PF08650_consen 23 LNESVAELNQELEEINRANKNL-EIVAQMWENYQRNVQFNL 62 (72)
T ss_pred HHHHHHHHHHHHHHHHHccccH-HHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999 899999999953 44443
No 11
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=81.00 E-value=10 Score=27.99 Aligned_cols=44 Identities=20% Similarity=0.446 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 52 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 52 (258)
+.++..+..++.-++.||+.|++-|+.+.++-..|=. |.+++.+
T Consensus 6 En~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~-lYE~Vs~ 49 (55)
T PF05377_consen 6 ENELPRIESSINTVKKENEEISESVEKIEENVKDLLS-LYEVVSN 49 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHc
Confidence 5567777778888888888888888888877766644 4444444
No 12
>smart00338 BRLZ basic region leucin zipper.
Probab=80.93 E-value=6.9 Score=28.32 Aligned_cols=40 Identities=20% Similarity=0.419 Sum_probs=34.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARI 46 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l 46 (258)
+...+..|+.++..+..||..|..-++.+...+..|..++
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566789999999999999999999999888888887654
No 13
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=80.84 E-value=2.8 Score=35.22 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=23.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKA 34 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~ 34 (258)
++-.++.|.+||.+++-||+.|+.-|..
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3556899999999999999999977654
No 14
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=80.41 E-value=5.2 Score=34.34 Aligned_cols=36 Identities=22% Similarity=0.334 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 12 KLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 47 (258)
Q Consensus 12 ~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 47 (258)
..|..||+++.+||-+|..-|+....+|.+|+.-.+
T Consensus 84 ~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 84 AELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 468999999999999999999999999999998655
No 15
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=78.36 E-value=8.4 Score=33.98 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 47 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 47 (258)
++++.|+.++..+..||++|..-+..+.++|.+|-..+.
T Consensus 111 ~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 111 NQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMD 149 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777888888888888899988765443
No 16
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=78.00 E-value=13 Score=28.37 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025097 11 MKLLQAKLEHVRKQ-------NENLRHLVKAMNNQCNDLLARIHEANRT 52 (258)
Q Consensus 11 ~~~L~~EL~rv~eE-------N~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 52 (258)
+..|+.|+.+++++ |..|+.-...+...+++.+.+|..++.+
T Consensus 20 i~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555554 7777777777788888888888877653
No 17
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=76.18 E-value=11 Score=31.30 Aligned_cols=42 Identities=10% Similarity=0.311 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 025097 9 EKMKLLQAKLEHVRKQNEN----LRHLVKAMNNQCNDLLARIHEAN 50 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~r----L~~mL~~~~~~y~~Lq~~l~~~~ 50 (258)
.+++..+.||.+.+.|... =.++|+.|.++|..|..||.+--
T Consensus 32 ~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~~Hla~~a 77 (128)
T PF06295_consen 32 QELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQKLYQHLAKGA 77 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555554444333 23477789999999999987653
No 18
>PRK11677 hypothetical protein; Provisional
Probab=76.00 E-value=11 Score=32.15 Aligned_cols=40 Identities=18% Similarity=0.276 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 025097 9 EKMKLLQAKLEHVRKQN----ENLRHLVKAMNNQCNDLLARIHE 48 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN----~rL~~mL~~~~~~y~~Lq~~l~~ 48 (258)
.+++..+.||++.+.|. -+-.++|+.|.++|..|..||..
T Consensus 36 ~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~Ly~HlA~ 79 (134)
T PRK11677 36 YELEKNKAELEEYRQELVSHFARSAELLDTMAKDYRQLYQHMAK 79 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333 24567889999999999999965
No 19
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=72.09 E-value=12 Score=34.17 Aligned_cols=39 Identities=21% Similarity=0.374 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARI 46 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l 46 (258)
++|-+.|..||.+|.||--.|+..|.+-...+..|...|
T Consensus 43 e~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 43 EEEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345578999999999999999999998888888777654
No 20
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=71.98 E-value=10 Score=30.70 Aligned_cols=37 Identities=8% Similarity=0.149 Sum_probs=29.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLL 43 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq 43 (258)
...+++.+++|+.+++.+|++|+.-+..+.++...+.
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiE 68 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIE 68 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHH
Confidence 4567888999999999999999999888877543333
No 21
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=70.08 E-value=7 Score=30.20 Aligned_cols=37 Identities=8% Similarity=0.191 Sum_probs=32.2
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 2 DSHNSPKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQ 38 (258)
Q Consensus 2 ~~~~~~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~ 38 (258)
..+||.+..++.-++||+.+.+++++.+++|...-+.
T Consensus 45 ~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~ 81 (83)
T PF07544_consen 45 RELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKER 81 (83)
T ss_pred HhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578999999999999999999999999999876554
No 22
>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3. The GAT domain stabilises membrane bound ARF1 in its GTP bound state, by interfering with GAP proteins [].; GO: 0006886 intracellular protein transport, 0005622 intracellular; PDB: 1YD8_H 1WR6_C 1WRD_A 1O3X_A 1J2J_B 1NWM_X 1X79_A 1OXZ_A 1NAF_A.
Probab=68.59 E-value=23 Score=27.73 Aligned_cols=46 Identities=17% Similarity=0.370 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHhcC
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVK----------------AMNNQCNDLLARIHEANRTY 53 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~----------------~~~~~y~~Lq~~l~~~~~~~ 53 (258)
-++++.+..||..|+.--.-|.+||. .+.+.|..+|..|+.++..-
T Consensus 3 ~e~~~k~~~~l~~v~~~~~lL~emL~~~~~~~~~~~~~el~~eL~~~ck~~r~~i~~li~~~ 64 (100)
T PF03127_consen 3 PEQVSKRRSELEKVKNNAKLLNEMLDNYDPGEESSSDNELIQELYESCKSMRPRIQRLIEEV 64 (100)
T ss_dssp HCTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35678899999999999999999998 34567889999999998653
No 23
>PRK04325 hypothetical protein; Provisional
Probab=67.50 E-value=31 Score=26.26 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=33.4
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 1 MDSHNSPKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEAN 50 (258)
Q Consensus 1 ~~~~~~~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~ 50 (258)
||..+.+++.+..|+..|-....-...|...|..--..-..|+.++..+.
T Consensus 1 ~~~~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~ 50 (74)
T PRK04325 1 MDAVQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLY 50 (74)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888899999888888876666666666665544444455555554443
No 24
>PF15294 Leu_zip: Leucine zipper
Probab=67.24 E-value=16 Score=34.70 Aligned_cols=41 Identities=24% Similarity=0.498 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh
Q 025097 11 MKLLQAKLEHVRKQNENLRHLVKAMNNQC-------NDLLARIHEANR 51 (258)
Q Consensus 11 ~~~L~~EL~rv~eEN~rL~~mL~~~~~~y-------~~Lq~~l~~~~~ 51 (258)
.+.|..|..|+++||.+|+.-|..+...| ..|+.+|.++-.
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46699999999999999999887665444 567888877754
No 25
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=67.04 E-value=12 Score=38.00 Aligned_cols=43 Identities=21% Similarity=0.341 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 52 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 52 (258)
.+..|+.++..+.+.|+||.++|.+.......|+.+|..+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~p 44 (512)
T TIGR03689 2 DLRELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQP 44 (512)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3567899999999999999999999999999999999998654
No 26
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=66.47 E-value=21 Score=32.84 Aligned_cols=37 Identities=14% Similarity=0.220 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 14 LQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEAN 50 (258)
Q Consensus 14 L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~ 50 (258)
..+||+|..++-.+|..+|...+.--...|.|+..++
T Consensus 24 A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 24 ANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999988888888888777
No 27
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=66.32 E-value=12 Score=27.17 Aligned_cols=30 Identities=23% Similarity=0.493 Sum_probs=26.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMN 36 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~ 36 (258)
.+.++..|+.++..+++||++|+.-+..+.
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~ 51 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERLK 51 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456788999999999999999999999883
No 28
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=66.22 E-value=13 Score=23.50 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENL 28 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL 28 (258)
+.+++.-++||.||+++|...
T Consensus 4 qakla~YqaeLa~vqk~na~~ 24 (25)
T PF06696_consen 4 QAKLAQYQAELARVQKANADY 24 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 456788999999999999865
No 29
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=65.57 E-value=28 Score=29.33 Aligned_cols=44 Identities=16% Similarity=0.259 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 52 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 52 (258)
+.++.|++|+.++..+.++-.+.|..+-.+..++...+.+...+
T Consensus 41 ~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 41 HQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678999999999999999999999999999999988887665
No 30
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=64.41 E-value=17 Score=25.66 Aligned_cols=30 Identities=20% Similarity=0.451 Sum_probs=23.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMN 36 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~ 36 (258)
+......|+.++..+.+||..|...+..+-
T Consensus 23 kk~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 23 KKQREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667888999999999999988777653
No 31
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=61.94 E-value=50 Score=25.05 Aligned_cols=38 Identities=24% Similarity=0.328 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLAR 45 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~ 45 (258)
+++++.|..-..++++||..|+.-+..+...-..|...
T Consensus 6 e~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ek 43 (65)
T TIGR02449 6 AAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEK 43 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999998877665555544
No 32
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=61.69 E-value=18 Score=26.73 Aligned_cols=42 Identities=10% Similarity=0.112 Sum_probs=35.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 4 HNSPKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLAR 45 (258)
Q Consensus 4 ~~~~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~ 45 (258)
+|..+-.+..++.|+..++++..+|.+-+..+...|...-.+
T Consensus 9 ~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs~~ 50 (55)
T PF05377_consen 9 LPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEVVSNQ 50 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 355667789999999999999999999999999999765443
No 33
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=61.63 E-value=8.7 Score=35.98 Aligned_cols=9 Identities=22% Similarity=0.445 Sum_probs=3.7
Q ss_pred Cccccccee
Q 025097 131 CPVKKKVQR 139 (258)
Q Consensus 131 C~akK~VQr 139 (258)
|.+--+++|
T Consensus 178 ~~i~v~i~r 186 (284)
T COG1792 178 SKIPVKINR 186 (284)
T ss_pred cceeEEecc
Confidence 333344444
No 34
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=61.19 E-value=10 Score=35.46 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025097 16 AKLEHVRKQNENLRHLVKAMN 36 (258)
Q Consensus 16 ~EL~rv~eEN~rL~~mL~~~~ 36 (258)
.+|.++.+||++|+.-|..+.
T Consensus 66 ~~~~~l~~EN~~Lr~e~~~l~ 86 (283)
T TIGR00219 66 KDVNNLEYENYKLRQELLKKN 86 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466777788888887665553
No 35
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=60.98 E-value=27 Score=29.39 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=31.3
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025097 2 DSHNSPKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 51 (258)
Q Consensus 2 ~~~~~~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 51 (258)
|++|+.+..-+.-.+.|.++.+||+....-|....+.=..|..++.+++.
T Consensus 90 dsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~ 139 (144)
T PF11221_consen 90 DSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQELIR 139 (144)
T ss_dssp HHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788655444555666777777777666666666655666666665553
No 36
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=58.67 E-value=52 Score=24.60 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 12 KLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 49 (258)
Q Consensus 12 ~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 49 (258)
..+.+||.+|++.|..+..-|...-..-..|..+|..+
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L 51 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERL 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999998877777777776655
No 37
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=58.57 E-value=23 Score=26.98 Aligned_cols=45 Identities=18% Similarity=0.325 Sum_probs=39.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 51 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 51 (258)
.++-.+.|++++..+.++-.+|...+..+.+.+..++..|.+++.
T Consensus 60 ~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~~~ 104 (106)
T PF01920_consen 60 KEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYELFG 104 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455668899999999999999999999999999999998876654
No 38
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=57.54 E-value=51 Score=26.34 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=40.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 51 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 51 (258)
.++-...|+..++.+.++-++|...+..+.+.+..+|.+|.++++
T Consensus 65 ~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~~ 109 (110)
T TIGR02338 65 KEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEALA 109 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556668899999999999999999999999999999999998875
No 39
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=57.15 E-value=32 Score=33.29 Aligned_cols=41 Identities=20% Similarity=0.291 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 49 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 49 (258)
.++.....|...+.+||++|..-|..-.+.+.+|-.||.+.
T Consensus 254 ~k~~~~~~eek~ireEN~rLqr~L~~E~erreal~R~lses 294 (310)
T PF09755_consen 254 EKMAQYLQEEKEIREENRRLQRKLQREVERREALCRHLSES 294 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788889999999999999999999999999988765
No 40
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=57.07 E-value=42 Score=29.86 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHE 48 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~ 48 (258)
++++.|+.+.+.+..||++|+.-+..+.++|.+|-..+..
T Consensus 111 ~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~r 150 (170)
T PRK13923 111 EQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIMNR 150 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888899999999999999999999999998765443
No 41
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=56.54 E-value=11 Score=34.28 Aligned_cols=26 Identities=15% Similarity=0.457 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVKAM 35 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~~~ 35 (258)
+++.+.+|+.++++||..|.++.+++
T Consensus 133 ~ie~~~eEi~~lk~en~~L~elae~~ 158 (200)
T PF07412_consen 133 EIEQKDEEIAKLKEENEELKELAEHV 158 (200)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777778877777765543
No 42
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=56.29 E-value=14 Score=33.57 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025097 12 KLLQAKLEHVRKQNENLRHLVK 33 (258)
Q Consensus 12 ~~L~~EL~rv~eEN~rL~~mL~ 33 (258)
..|.+|-+++++||.+|+.-+.
T Consensus 72 ~~l~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 72 FDLREENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555444
No 43
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=55.39 E-value=48 Score=25.58 Aligned_cols=41 Identities=24% Similarity=0.421 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHh
Q 025097 11 MKLLQAKLEHVRKQNENLRHLVKAMN-----NQCNDLLARIHEANR 51 (258)
Q Consensus 11 ~~~L~~EL~rv~eEN~rL~~mL~~~~-----~~y~~Lq~~l~~~~~ 51 (258)
+..|+.||.+++-|-..|..++..+. .....|..+|..++.
T Consensus 19 l~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~ 64 (79)
T PF06657_consen 19 LKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVK 64 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHH
Confidence 46789999999999999999998774 456677777766654
No 44
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=54.36 E-value=42 Score=29.88 Aligned_cols=42 Identities=12% Similarity=0.260 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 51 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 51 (258)
..+..+.+|..+..||++|++=|......-..|+.++..+-.
T Consensus 42 ~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~k 83 (201)
T PF13851_consen 42 KEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEK 83 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566678888999999999999888888888888776643
No 45
>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
Probab=52.76 E-value=18 Score=39.04 Aligned_cols=32 Identities=25% Similarity=0.553 Sum_probs=26.6
Q ss_pred CCCcccccceeecCCCcEEEEEeccccCCCCCC
Q 025097 129 SGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQC 161 (258)
Q Consensus 129 ~gC~akK~VQr~~~D~~~~~~tY~G~HnH~~p~ 161 (258)
.||+|+=.|.+. .|..-.++-++.+|||+.-+
T Consensus 159 tGC~A~m~Vk~~-~~gkW~V~~fv~eHNH~L~p 190 (846)
T PLN03097 159 TDCKASMHVKRR-PDGKWVIHSFVKEHNHELLP 190 (846)
T ss_pred CCCceEEEEEEc-CCCeEEEEEEecCCCCCCCC
Confidence 379999999874 45668899999999999854
No 46
>PRK10884 SH3 domain-containing protein; Provisional
Probab=52.21 E-value=52 Score=29.70 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=5.8
Q ss_pred hHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHV 21 (258)
Q Consensus 8 eee~~~L~~EL~rv 21 (258)
+.+++.|++||..+
T Consensus 99 e~el~~l~~~l~~~ 112 (206)
T PRK10884 99 ENQVKTLTDKLNNI 112 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 47
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=51.71 E-value=36 Score=23.85 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 11 MKLLQAKLEHVRKQNENLRHLVKAMNN 37 (258)
Q Consensus 11 ~~~L~~EL~rv~eEN~rL~~mL~~~~~ 37 (258)
-+.|.++-.++..||.+|+..|..+.+
T Consensus 14 yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 14 YDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777888888888888877766553
No 48
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=51.47 E-value=52 Score=31.10 Aligned_cols=44 Identities=23% Similarity=0.400 Sum_probs=37.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEAN 50 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~ 50 (258)
+.+-.+.++++|+...+||..|..-|..+-..|+.+|..|-.+-
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le 176 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLE 176 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667788888999999999999999999999999998887663
No 49
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=51.07 E-value=51 Score=26.76 Aligned_cols=36 Identities=17% Similarity=0.383 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLA 44 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~ 44 (258)
+.++.|++++....+++++|+..+....+.-..|+.
T Consensus 80 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 80 SQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888888888888887777765
No 50
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=50.85 E-value=49 Score=31.42 Aligned_cols=41 Identities=17% Similarity=0.281 Sum_probs=21.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 47 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 47 (258)
+|.++..|++|=+++..||..|++.=.-+...-+.|.+.|.
T Consensus 95 me~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le 135 (292)
T KOG4005|consen 95 MEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELE 135 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34445555555555555665555555444444455555444
No 51
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=49.27 E-value=53 Score=26.83 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRH 30 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~ 30 (258)
+++.|+..+..+-|||.+|+.
T Consensus 23 ~~~~LK~~~~~l~EEN~~L~~ 43 (107)
T PF06156_consen 23 ELEELKKQLQELLEENARLRI 43 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555554
No 52
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=47.90 E-value=59 Score=33.19 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLV 32 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL 32 (258)
+++.|..|=+++++||++|+.+.
T Consensus 74 ~~~~l~~~N~~l~~eN~~L~~r~ 96 (472)
T TIGR03752 74 RLAKLISENEALKAENERLQKRE 96 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444555555556666666533
No 53
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=47.58 E-value=84 Score=27.82 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 11 MKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLA 44 (258)
Q Consensus 11 ~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~ 44 (258)
.+.|+.|+..+.++|+.|..-+..+......++.
T Consensus 106 ~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~e 139 (161)
T TIGR02894 106 NERLKNQNESLQKRNEELEKELEKLRQRLSTIEE 139 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555544444443
No 54
>PRK14127 cell division protein GpsB; Provisional
Probab=47.24 E-value=71 Score=26.38 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 11 MKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 49 (258)
Q Consensus 11 ~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 49 (258)
+..+..+++.+..||.+|++.+..+.+.-..++.++...
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 456677777778888888888877777777777766543
No 55
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=47.20 E-value=60 Score=27.66 Aligned_cols=29 Identities=14% Similarity=0.270 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 12 KLLQAKLEHVRKQNENLRHLVKAMNNQCN 40 (258)
Q Consensus 12 ~~L~~EL~rv~eEN~rL~~mL~~~~~~y~ 40 (258)
.+..+=++-+++||+=|++.|-.+-+.|.
T Consensus 81 ~aKdETI~~lk~EN~fLKeAl~s~QE~y~ 109 (126)
T PF13118_consen 81 DAKDETIEALKNENRFLKEALYSMQELYE 109 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555678889999999999999999993
No 56
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=46.71 E-value=45 Score=27.08 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQC 39 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y 39 (258)
+++++.|.-.|..|-++|++|+.=|......|
T Consensus 14 EEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 14 EEEAELLRRKLSELEDENKQLTEELNKYKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56778888888888888888888666554444
No 57
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=46.20 E-value=39 Score=24.93 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 11 MKLLQAKLEHVRKQNENLRHLVKA 34 (258)
Q Consensus 11 ~~~L~~EL~rv~eEN~rL~~mL~~ 34 (258)
-..|..|-..+.++|.+|+.+|.+
T Consensus 35 R~~l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 35 RAALIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367888889999999999998864
No 58
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=45.99 E-value=39 Score=27.93 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRH 30 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~ 30 (258)
+++.|+..|..+-|||.+|+.
T Consensus 23 el~~LK~~~~el~EEN~~L~i 43 (110)
T PRK13169 23 ELGALKKQLAELLEENTALRL 43 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554
No 59
>PRK10884 SH3 domain-containing protein; Provisional
Probab=45.58 E-value=48 Score=29.92 Aligned_cols=25 Identities=8% Similarity=0.231 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 20 HVRKQNENLRHLVKAMNNQCNDLLA 44 (258)
Q Consensus 20 rv~eEN~rL~~mL~~~~~~y~~Lq~ 44 (258)
++.+||++|++-|..+...=..|+.
T Consensus 136 ~L~~~n~~L~~~l~~~~~~~~~l~~ 160 (206)
T PRK10884 136 GLKEENQKLKNQLIVAQKKVDAANL 160 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333333333
No 60
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=45.36 E-value=85 Score=26.59 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVK 33 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~ 33 (258)
+.++..|++||..+..+++.|+.-|.
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELA 103 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666665554444
No 61
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=45.24 E-value=83 Score=28.40 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 51 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 51 (258)
.+...|..|++.+...|++|...++.....-..|+.++.++..
T Consensus 56 ~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 56 AEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777777777777777777766666543
No 62
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=45.01 E-value=56 Score=30.12 Aligned_cols=43 Identities=16% Similarity=0.228 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEAN 50 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~ 50 (258)
+++...+.+|++.+.+|-++...-|+..-+++.+|++|+.++.
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~ 192 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQ 192 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 5566667777777777777777777777777777777766553
No 63
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=44.80 E-value=65 Score=34.21 Aligned_cols=45 Identities=16% Similarity=0.278 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 52 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 52 (258)
-+++..|++|++.+++..++|.+-++.+.+++..|..++..+++.
T Consensus 578 l~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~ 622 (717)
T PF10168_consen 578 LKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQL 622 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888999999999999999999999999999998888764
No 64
>PF03112 DUF244: Uncharacterized protein family (ORF7) DUF; InterPro: IPR004335 Many of the proteins in this entry are Borrelia burgdorferi plasmid proteins of unknown function.
Probab=44.19 E-value=44 Score=29.45 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025097 9 EKMKLLQAKLEHVRKQNENLR 29 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~ 29 (258)
.+++.|+.||++++.||++.+
T Consensus 77 ~EI~~lq~ElnKiqnEn~k~e 97 (158)
T PF03112_consen 77 MEIDSLQTELNKIQNENKKRE 97 (158)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 367889999999999999874
No 65
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=43.92 E-value=33 Score=27.12 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=25.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 4 HNSPKEKMKLLQAKLEHVRKQNENLRHLVKAM 35 (258)
Q Consensus 4 ~~~~eee~~~L~~EL~rv~eEN~rL~~mL~~~ 35 (258)
+|.+..+.+.|.+.|..+.++|.+|..-|...
T Consensus 75 ~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 75 APYKKKEREQLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35567778889999999999999988776654
No 66
>PRK09343 prefoldin subunit beta; Provisional
Probab=43.50 E-value=1.2e+02 Score=24.97 Aligned_cols=47 Identities=21% Similarity=0.290 Sum_probs=41.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTY 53 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~~ 53 (258)
+++-.+.|.+.++-+..+-++|..-...+.+.+..++.+|.++++.-
T Consensus 69 ~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 69 KTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566889999999999999999999999999999999999998764
No 67
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=43.14 E-value=60 Score=24.77 Aligned_cols=32 Identities=25% Similarity=0.537 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 025097 13 LLQAKLEHVRKQNENLRHLVKA----MNNQCNDLLA 44 (258)
Q Consensus 13 ~L~~EL~rv~eEN~rL~~mL~~----~~~~y~~Lq~ 44 (258)
.+..-|.++-.||..|++.|.+ |.+.|..|..
T Consensus 3 e~~~~l~~LL~EN~~LKealrQ~N~~Mker~e~l~~ 38 (68)
T PF11577_consen 3 EMQQQLQELLQENQDLKEALRQNNQAMKERFEELLA 38 (68)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999984 4466666654
No 68
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=42.71 E-value=45 Score=24.01 Aligned_cols=31 Identities=16% Similarity=0.344 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 025097 23 KQNENLRHLVKAMNNQCNDLLARIHEANRTY 53 (258)
Q Consensus 23 eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~~ 53 (258)
.-|..|+..|..+...+...|.+|+++|.+.
T Consensus 27 ~~np~lR~~l~~~~~~~~~~~~~l~~~m~~k 57 (64)
T PF07875_consen 27 CANPELRQILQQILNECQQMQYELFNYMNQK 57 (64)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4688999999999999999999999999875
No 69
>PRK14127 cell division protein GpsB; Provisional
Probab=42.20 E-value=57 Score=26.96 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDL 42 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~L 42 (258)
..+.|..|+.++++||++|+.-|..+...-...
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 456777788888888888887777666544333
No 70
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=41.34 E-value=88 Score=29.72 Aligned_cols=15 Identities=20% Similarity=0.193 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHH
Q 025097 36 NNQCNDLLARIHEAN 50 (258)
Q Consensus 36 ~~~y~~Lq~~l~~~~ 50 (258)
-..|+.++.++.++.
T Consensus 98 ~~~~n~~~~~l~~~~ 112 (314)
T PF04111_consen 98 WREYNELQLELIEFQ 112 (314)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555443
No 71
>PRK14160 heat shock protein GrpE; Provisional
Probab=40.92 E-value=91 Score=28.48 Aligned_cols=44 Identities=14% Similarity=0.254 Sum_probs=34.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEAN 50 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~ 50 (258)
.+..++.|+.++..+.+++..|..-+..+.+.|..+++-|..+-
T Consensus 52 ~~~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~R 95 (211)
T PRK14160 52 NEVKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYR 95 (211)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888888888888888888888888888887776664
No 72
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=40.43 E-value=1.1e+02 Score=27.12 Aligned_cols=45 Identities=13% Similarity=0.319 Sum_probs=36.8
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 4 HNSPKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHE 48 (258)
Q Consensus 4 ~~~~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~ 48 (258)
+.+....+....+||+|+.++-++|......+...++.+..+...
T Consensus 67 ~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~q 111 (157)
T COG3352 67 IEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQ 111 (157)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHH
Confidence 445667788899999999999999999999998888877765443
No 73
>PF14645 Chibby: Chibby family
Probab=40.42 E-value=91 Score=25.79 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=25.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLR-------HLVKAMNNQCNDLLAR 45 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~-------~mL~~~~~~y~~Lq~~ 45 (258)
..++...|+.|..++.|||.-|+ +||+.....++.++.+
T Consensus 69 ~~~~~~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~ 114 (116)
T PF14645_consen 69 DGEENQRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKE 114 (116)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556667777777777777665 5666666666655544
No 74
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=40.37 E-value=63 Score=33.00 Aligned_cols=38 Identities=11% Similarity=0.258 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 47 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 47 (258)
+++.|+.||+.++..++.|...|..+.+.-..|+.|+.
T Consensus 84 qLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 84 QYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44444445554445556677777777777778887763
No 75
>PRK14148 heat shock protein GrpE; Provisional
Probab=40.23 E-value=1.1e+02 Score=27.69 Aligned_cols=40 Identities=5% Similarity=0.210 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 47 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 47 (258)
+.+++.|+++|..+.+|...|++.+-+....+..++.+..
T Consensus 39 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~ 78 (195)
T PRK14148 39 EEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAE 78 (195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667777777777777666666666555555554433
No 76
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=40.20 E-value=1.5e+02 Score=23.36 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVKAM---NNQCNDLLARIHEA 49 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~~~---~~~y~~Lq~~l~~~ 49 (258)
+-..|..+|..-.+|..||...++.+ .-+|..|-.+|.+-
T Consensus 6 qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~ 48 (76)
T PF11544_consen 6 QNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQ 48 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777766654 35677776666543
No 77
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=39.99 E-value=54 Score=24.36 Aligned_cols=30 Identities=17% Similarity=0.367 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNN 37 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~ 37 (258)
..+++.++.|+..+++||.+|+.-+..+.+
T Consensus 30 ~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 30 NNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456677888888888888888887776654
No 78
>PF03859 CG-1: CG-1 domain; InterPro: IPR005559 CG-1 domains are highly conserved domains of about 130 amino-acid residues containing a predicted bipartite NLS and named after a partial cDNA clone isolated from parsley encoding a sequence-specific DNA-binding protein []. CG-1 domains are associated with CAMTA proteins (for CAlModulin -binding Transcription Activator) that are transcription factors containing a calmodulin-binding domain and ankyrins [].; GO: 0005516 calmodulin binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=39.77 E-value=11 Score=31.76 Aligned_cols=9 Identities=78% Similarity=1.527 Sum_probs=7.4
Q ss_pred ccCCccccc
Q 025097 98 VKDGHQWRK 106 (258)
Q Consensus 98 ~~DGy~WRK 106 (258)
=.|||.|||
T Consensus 51 RkDG~~WrK 59 (118)
T PF03859_consen 51 RKDGHNWRK 59 (118)
T ss_pred hcccceeEE
Confidence 369999994
No 79
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=39.62 E-value=1.3e+02 Score=26.14 Aligned_cols=37 Identities=8% Similarity=0.196 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 13 LLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 49 (258)
Q Consensus 13 ~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 49 (258)
.|+.++..+.++.+.+...+..+.+-|.+|+.++.-+
T Consensus 127 ~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~ 163 (194)
T PF08614_consen 127 QLEEKIKDLEEELKEKNKANEILQDELQALQLQLNML 163 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444455667777777766544
No 80
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=39.53 E-value=74 Score=32.25 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVKAM 35 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~~~ 35 (258)
++..++.||+|+++||..|.+-+-+.
T Consensus 49 ~~~~~E~~l~~Lq~e~~~l~e~~v~~ 74 (459)
T KOG0288|consen 49 KLQEKELELNRLQEENTQLNEERVRE 74 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999988766543
No 81
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=39.36 E-value=86 Score=27.06 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 12 KLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 49 (258)
Q Consensus 12 ~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 49 (258)
++|..||+-++.|.-.|.+.|..--+-+..||.|-.+-
T Consensus 37 eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLqlhcqek 74 (134)
T PF15233_consen 37 EALQRELDSLNGEKVHLEEILNKKQETLRILQLHCQEK 74 (134)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999998888888888776544
No 82
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=39.35 E-value=67 Score=31.88 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLVKAMNN 37 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL~~~~~ 37 (258)
+|...|+.|=.+++.||..|+.-|+++.+
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~ 60 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLEN 60 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888877766633
No 83
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=39.28 E-value=1.2e+02 Score=24.11 Aligned_cols=38 Identities=24% Similarity=0.409 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARI 46 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l 46 (258)
|.+..|+-|++.++++|..|..-...+...-..|...-
T Consensus 18 dtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en 55 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELEREN 55 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45677999999999999999887776555555454433
No 84
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=39.12 E-value=1.4e+02 Score=22.59 Aligned_cols=45 Identities=20% Similarity=0.303 Sum_probs=33.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 5 NSPKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 49 (258)
Q Consensus 5 ~~~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 49 (258)
-.+|++++.|.+|.+.++.-.-++...+..+...-..+...+.++
T Consensus 8 ~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l 52 (74)
T PF12329_consen 8 AEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKEL 52 (74)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999998887777777776666666665555544
No 85
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=38.32 E-value=1.5e+02 Score=23.26 Aligned_cols=44 Identities=18% Similarity=0.319 Sum_probs=37.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEAN 50 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~ 50 (258)
.++-...|...+..+..+-++|..-+..+.+....|+.+|.++.
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666788999999999999999999999999999999888763
No 86
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=38.00 E-value=90 Score=30.28 Aligned_cols=47 Identities=15% Similarity=0.322 Sum_probs=43.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025097 5 NSPKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 51 (258)
Q Consensus 5 ~~~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 51 (258)
-+|-+.+-.|-.||+.-+.|-.+.+.|.+++.+.|.+|+....++..
T Consensus 5 ~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~ 51 (319)
T PF09789_consen 5 QSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQ 51 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45778888999999999999999999999999999999999998874
No 87
>COG2770 ResE FOG: HAMP domain [Signal transduction mechanisms]
Probab=37.56 E-value=44 Score=25.26 Aligned_cols=30 Identities=7% Similarity=0.056 Sum_probs=24.8
Q ss_pred CCCC-chHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 3 SHNS-PKEKMKLLQAKLEHVRKQNENLRHLV 32 (258)
Q Consensus 3 ~~~~-~eee~~~L~~EL~rv~eEN~rL~~mL 32 (258)
..|. +.+|++.|+.+++++..+.++-.+.|
T Consensus 52 ~i~~~~~dEi~~L~~a~~~m~~~l~~~~~~l 82 (83)
T COG2770 52 EIPQPMLDEIGELAKAFNRMRDSLQRALSAL 82 (83)
T ss_pred cCCccchhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3566 88999999999999999988876654
No 88
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=37.51 E-value=95 Score=25.36 Aligned_cols=35 Identities=14% Similarity=0.285 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLA 44 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~ 44 (258)
.+..|++-|..+.++-..|+..+..+.+-=.+|+.
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~ 43 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRI 43 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777765555554
No 89
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=37.12 E-value=99 Score=28.03 Aligned_cols=38 Identities=18% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 12 KLLQAKLEHVRKQNE----NLRHLVKAMNNQCNDLLARIHEAN 50 (258)
Q Consensus 12 ~~L~~EL~rv~eEN~----rL~~mL~~~~~~y~~Lq~~l~~~~ 50 (258)
..|..||++|+||-+ .++..-+.|-.+|..|+. |+++|
T Consensus 50 ~eLkNeLREVREELkEKmeEIKQIKdiMDKDFDKL~E-FVEIM 91 (205)
T PF15079_consen 50 QELKNELREVREELKEKMEEIKQIKDIMDKDFDKLHE-FVEIM 91 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHH
No 90
>KOG1510 consensus RNA polymerase II holoenzyme and mediator subcomplex, subunit SURB7/SRB7 [Transcription]
Probab=36.79 E-value=1.1e+02 Score=26.51 Aligned_cols=48 Identities=15% Similarity=0.263 Sum_probs=27.5
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 2 DSHNSPKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 49 (258)
Q Consensus 2 ~~~~~~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 49 (258)
|++|+-+-..+.-.++|.++.+||+.-..-|..+...=..|-.|+..+
T Consensus 77 dsLP~~~~~~e~Ql~~i~kLq~en~e~~~el~~~v~~~e~Ll~~vq~~ 124 (139)
T KOG1510|consen 77 DSLPGEEGSAEAQLEKIKKLQEENEEVALELEELVSKGEKLLEQVQSL 124 (139)
T ss_pred HhCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678887666655555566666666655544444444444444444433
No 91
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=36.61 E-value=76 Score=29.65 Aligned_cols=23 Identities=9% Similarity=0.068 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025097 11 MKLLQAKLEHVRKQNENLRHLVK 33 (258)
Q Consensus 11 ~~~L~~EL~rv~eEN~rL~~mL~ 33 (258)
+..|++|-+++++|+.+|..-|.
T Consensus 68 ~~~l~~EN~~Lr~e~~~l~~~~~ 90 (283)
T TIGR00219 68 VNNLEYENYKLRQELLKKNQQLE 90 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777666633333
No 92
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=36.32 E-value=1.1e+02 Score=31.42 Aligned_cols=43 Identities=21% Similarity=0.274 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHh
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLVKA------------------MNNQCNDLLARIHEANR 51 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL~~------------------~~~~y~~Lq~~l~~~~~ 51 (258)
++++.++.||...+|||+.|..-+.. .-+.-..||.||.++|-
T Consensus 389 ~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 389 TKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMF 449 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhe
Confidence 45566777777777777766654443 33444566777777664
No 93
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=35.95 E-value=1.4e+02 Score=28.38 Aligned_cols=42 Identities=19% Similarity=0.388 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 49 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 49 (258)
++....+++||..+..|.++|..-|..+-.....|..++.++
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~l 83 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEEL 83 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777777777777776666666666665554
No 94
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=35.90 E-value=1.3e+02 Score=24.08 Aligned_cols=42 Identities=24% Similarity=0.476 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHV--RKQNENLRHLVKAMNNQCNDLLARIHEA 49 (258)
Q Consensus 8 eee~~~L~~EL~rv--~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 49 (258)
+..+..|+.+|+.+ +.+-.+|...|+.+.....+|..+|..+
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34455555555555 5555555555555555555555555443
No 95
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=35.83 E-value=1.3e+02 Score=23.70 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 025097 12 KLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTY 53 (258)
Q Consensus 12 ~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~~ 53 (258)
..|......|++||.+|+. .=..||..+..+|...
T Consensus 33 ~~L~~Rve~Vk~E~~kL~~-------EN~~Lq~YI~nLm~~s 67 (80)
T PF10224_consen 33 EALSDRVEEVKEENEKLES-------ENEYLQQYIGNLMSSS 67 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhh
Confidence 3444445555555555543 2245777777887754
No 96
>PF15058 Speriolin_N: Speriolin N terminus
Probab=35.56 E-value=63 Score=29.54 Aligned_cols=39 Identities=26% Similarity=0.433 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 11 MKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEAN 50 (258)
Q Consensus 11 ~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~ 50 (258)
-+-|...++|+-.||.+|+..+.-|.||+. |+.-|.+..
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLirEN~e-LksaL~ea~ 45 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLIRENHE-LKSALGEAC 45 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHHhh
Confidence 356788889999999999999999999986 444355543
No 97
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=35.51 E-value=1.2e+02 Score=25.32 Aligned_cols=10 Identities=30% Similarity=0.428 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 025097 11 MKLLQAKLEH 20 (258)
Q Consensus 11 ~~~L~~EL~r 20 (258)
+..|+.||.+
T Consensus 32 ~~~l~~el~~ 41 (120)
T PF12325_consen 32 LASLQEELAR 41 (120)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 98
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=35.43 E-value=1.1e+02 Score=25.40 Aligned_cols=34 Identities=15% Similarity=0.164 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLL 43 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq 43 (258)
.+..|+.-|..+.+|-..|+..|..+.+-=.+|+
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~ 42 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALR 42 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666554444444
No 99
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=35.11 E-value=1.2e+02 Score=24.45 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=22.7
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 2 DSHNSPKEKMKLLQAKLEHVRKQNENLRHLVKAMN 36 (258)
Q Consensus 2 ~~~~~~eee~~~L~~EL~rv~eEN~rL~~mL~~~~ 36 (258)
+.+|+.++ +..|+-+|.+|+.+-+.|..-|+.|.
T Consensus 59 ~~LPt~~d-v~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 59 EHLPTRDD-VHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HhCCCHHH-HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34555554 66777777777777777777776663
No 100
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=34.05 E-value=1.1e+02 Score=31.28 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVKAMNN 37 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~~~~~ 37 (258)
++..|+.||..+..+|++|+.-.+++..
T Consensus 67 ~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 67 EVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466778888888888888888888865
No 101
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=33.91 E-value=1.1e+02 Score=27.68 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025097 16 AKLEHVRKQNENLRHLVKAMN 36 (258)
Q Consensus 16 ~EL~rv~eEN~rL~~mL~~~~ 36 (258)
..+..+.+||++|+.-+..+.
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~ 89 (276)
T PRK13922 69 ASLFDLREENEELKKELLELE 89 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777776655544
No 102
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=33.83 E-value=72 Score=24.55 Aligned_cols=27 Identities=19% Similarity=0.519 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVKAMN 36 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~~~~ 36 (258)
+++.++.|..++.+||++|+--+..+.
T Consensus 43 ~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 43 ELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466777777777778877776665554
No 103
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=33.59 E-value=1.2e+02 Score=25.87 Aligned_cols=36 Identities=6% Similarity=0.263 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025097 16 AKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 51 (258)
Q Consensus 16 ~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 51 (258)
.|..++...--||-.||+.|...|+.-..|+..++.
T Consensus 70 ~~~~e~q~kK~KLl~mL~eVd~RY~qY~~Qmq~Vvs 105 (140)
T PF07526_consen 70 AERQELQRKKAKLLSMLDEVDRRYRQYYDQMQAVVS 105 (140)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556678999999999999999888887765
No 104
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=33.17 E-value=1.7e+02 Score=25.34 Aligned_cols=48 Identities=17% Similarity=0.338 Sum_probs=42.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 025097 6 SPKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTY 53 (258)
Q Consensus 6 ~~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~~ 53 (258)
+-++.++.|+.+++.+.+.-++|..+|..+...+..|+..+..+.+++
T Consensus 91 ~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~ 138 (145)
T COG1730 91 SADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQ 138 (145)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778999999999999999999999999999999999888876653
No 105
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=32.86 E-value=1.4e+02 Score=21.46 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 16 AKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 49 (258)
Q Consensus 16 ~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 49 (258)
..+..+..+...|....+.+...+..|+..+..+
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433
No 106
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=32.81 E-value=1.9e+02 Score=25.52 Aligned_cols=41 Identities=24% Similarity=0.483 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025097 11 MKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 51 (258)
Q Consensus 11 ~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 51 (258)
...++.++..+.+|++.|+.-+..+..++..++.+..+..+
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~ 162 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQ 162 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888888888888888888887776544
No 107
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=32.71 E-value=1.9e+02 Score=22.73 Aligned_cols=43 Identities=23% Similarity=0.438 Sum_probs=35.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 49 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 49 (258)
.++..+.|+..+..+.++-.+|...|..+.+.+..|+..+..+
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 85 LEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455677888888899999999999999999999888877654
No 108
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=32.55 E-value=1.4e+02 Score=26.48 Aligned_cols=35 Identities=29% Similarity=0.469 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 13 LLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 47 (258)
Q Consensus 13 ~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 47 (258)
.|.+.|+.+...|..|++=|..+...+..|+..|.
T Consensus 85 lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 85 LLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777777777777765544
No 109
>PRK14139 heat shock protein GrpE; Provisional
Probab=32.54 E-value=1.5e+02 Score=26.56 Aligned_cols=40 Identities=13% Similarity=0.221 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 47 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 47 (258)
+.++..|++||..+.+|...|++.+-++...|..++.++.
T Consensus 31 ~~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~ 70 (185)
T PRK14139 31 EDAAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQ 70 (185)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888888777777666655555444
No 110
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=32.14 E-value=1.3e+02 Score=27.31 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDL 42 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~L 42 (258)
+.+-..|++|+.-+++||.+|..-.+.+-..+..|
T Consensus 94 EkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 94 EKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 44556788888888888888887777666655544
No 111
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=32.03 E-value=1.8e+02 Score=26.81 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 51 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 51 (258)
..+++.+++++...+..-+.|..++++..+.+..+...+.+++.
T Consensus 243 ~~~~~~~~A~~~~~~a~~~~l~~~~~~~~~~~~~~~e~~~~~~~ 286 (306)
T PF04888_consen 243 QKEAEKLQADQMELQAMMEQLQSIMDQAIKQFKKLMESFQQIMK 286 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888888888888888888777777777777766654
No 112
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=32.00 E-value=1.6e+02 Score=27.20 Aligned_cols=43 Identities=9% Similarity=0.173 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 51 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 51 (258)
.+++.|+.|+.+++-.++++..-|+.+.+.-..|...|.....
T Consensus 61 ~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 61 QQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666666666666666666666555555555555543
No 113
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=31.58 E-value=2.3e+02 Score=23.18 Aligned_cols=46 Identities=15% Similarity=0.321 Sum_probs=39.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 52 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 52 (258)
.++..+.|...+..+.+.-++|..-|..+.+.+..++..+.++..+
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888999999999999999999999999999998888654
No 114
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=31.27 E-value=1.3e+02 Score=32.21 Aligned_cols=42 Identities=26% Similarity=0.495 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 49 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 49 (258)
+.++..++.+|.++..||.||......+.+.+..|..+...+
T Consensus 40 ~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~l 81 (717)
T PF09730_consen 40 ENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRL 81 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888888999999999999888887777666554433
No 115
>PRK14158 heat shock protein GrpE; Provisional
Probab=31.27 E-value=1.9e+02 Score=26.08 Aligned_cols=41 Identities=10% Similarity=0.107 Sum_probs=28.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 47 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 47 (258)
.+++++.|+++|..+.+|...|++-+-++...|..++.++.
T Consensus 38 ~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~ 78 (194)
T PRK14158 38 AADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQ 78 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888888777777777777666666655555443
No 116
>smart00574 POX domain associated with HOX domains.
Probab=31.25 E-value=1.4e+02 Score=25.89 Aligned_cols=36 Identities=6% Similarity=0.271 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025097 16 AKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 51 (258)
Q Consensus 16 ~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 51 (258)
.|..++.-...||-.||+.|...|+.-..|+..++.
T Consensus 70 ~~r~e~q~kk~kLl~mL~eVd~RY~qY~~qmq~v~s 105 (140)
T smart00574 70 AERQELQRKKAKLLSMLEEVDRRYKHYYEQMQTVVS 105 (140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555678999999999999998888887765
No 117
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=31.13 E-value=1.6e+02 Score=30.40 Aligned_cols=45 Identities=22% Similarity=0.338 Sum_probs=37.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 51 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 51 (258)
.++.++.|++|+.++.+|-+.+++-|..+.+.|..+...+.+.+.
T Consensus 213 p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 257 (646)
T PRK05771 213 PSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLE 257 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577889999999999999999999999999888777775555544
No 118
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=31.09 E-value=2.2e+02 Score=22.24 Aligned_cols=44 Identities=16% Similarity=0.345 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 51 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 51 (258)
++..+-|...+..+.+.-++|..-+..+...+..++..+..+.+
T Consensus 76 ~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 119 (120)
T PF02996_consen 76 EEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLYQ 119 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566777788888888888888888888888888877766654
No 119
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=31.06 E-value=86 Score=23.59 Aligned_cols=21 Identities=19% Similarity=0.534 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025097 9 EKMKLLQAKLEHVRKQNENLR 29 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~ 29 (258)
++++.|++.+..+.+.|.+|.
T Consensus 14 EEVevLK~~I~eL~~~n~~Le 34 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLE 34 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555444
No 120
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=30.49 E-value=2.1e+02 Score=24.57 Aligned_cols=29 Identities=24% Similarity=0.487 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 14 LQAKLEHVRKQNENLRHLVKAMNNQCNDL 42 (258)
Q Consensus 14 L~~EL~rv~eEN~rL~~mL~~~~~~y~~L 42 (258)
|..||.-+++|+..|..||..+-+.-..|
T Consensus 71 L~~EL~~l~sEk~~L~k~lq~~q~kv~eL 99 (140)
T PF10473_consen 71 LELELDTLRSEKENLDKELQKKQEKVSEL 99 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443333333
No 121
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=30.20 E-value=1.7e+02 Score=25.01 Aligned_cols=39 Identities=8% Similarity=0.244 Sum_probs=25.0
Q ss_pred chHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Q 025097 7 PKEKMKLLQAKLEHVRKQNEN------------LRHLVKAMNNQCNDLLAR 45 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~r------------L~~mL~~~~~~y~~Lq~~ 45 (258)
..++...|+.|+.++++|++. |+.-++.+.+.+..|+..
T Consensus 38 ~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~ 88 (161)
T PF04420_consen 38 SSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKS 88 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788888888888764 555555555555555543
No 122
>PRK14143 heat shock protein GrpE; Provisional
Probab=30.14 E-value=1.8e+02 Score=26.95 Aligned_cols=41 Identities=15% Similarity=0.283 Sum_probs=29.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 47 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 47 (258)
.++++..|++||..+.+|.+.|+..+-++...|..++.+..
T Consensus 65 ~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~ 105 (238)
T PRK14143 65 NAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTS 105 (238)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888887777776666666665544
No 123
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=29.63 E-value=2.3e+02 Score=24.80 Aligned_cols=45 Identities=18% Similarity=0.343 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 52 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 52 (258)
+++++.|+..+......-.+|+.-|..+..++..|+.....++.+
T Consensus 97 e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar 141 (221)
T PF04012_consen 97 EEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAR 141 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777777777777777777777766654
No 124
>KOG0673 consensus Thymidylate synthase [Nucleotide transport and metabolism]
Probab=29.42 E-value=22 Score=33.69 Aligned_cols=32 Identities=31% Similarity=0.553 Sum_probs=23.2
Q ss_pred ccccCCccccccCcc---------------------ccCCCCCCcceeecccC
Q 025097 96 LIVKDGHQWRKYGQK---------------------VTKDNPSPRAYFRCSMA 127 (258)
Q Consensus 96 ~~~~DGy~WRKYGQK---------------------~ikgn~~PRsYYRCs~~ 127 (258)
+-+-=|++||-+|-| .||+||+-|----|.+-
T Consensus 111 lgpvyGfqWrHfgA~Y~~~~~dy~gqgvdQL~~vI~~ik~NP~drRIimsAwN 163 (293)
T KOG0673|consen 111 LGPVYGFQWRHFGARYEDCDSDYTGQGVDQLADVINKIKNNPDDRRIIMSAWN 163 (293)
T ss_pred cccccceeeeecCccccccccccccccHHHHHHHHHHHhcCCccceeeeeccC
Confidence 444568999999977 48888888865555543
No 125
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=29.31 E-value=99 Score=22.56 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 12 KLLQAKLEHVRKQNENLRHLVKAM 35 (258)
Q Consensus 12 ~~L~~EL~rv~eEN~rL~~mL~~~ 35 (258)
.....+|..+..||+.|+.-|...
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999988754
No 126
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=29.12 E-value=1.6e+02 Score=28.46 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 13 LLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 49 (258)
Q Consensus 13 ~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 49 (258)
.|+..+.....||..|..+|...-+.-..|++.|.++
T Consensus 245 dlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~el 281 (306)
T PF04849_consen 245 DLQQRCKQLAAENEELQQHLQASKESQRQLQAELQEL 281 (306)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555555554
No 127
>PF12107 VEK-30: Plasminogen (Pg) ligand in fibrinolytic pathway; InterPro: IPR021965 Pg is an important mediator of angiostatin production in the fibrinolytic pathway. Pg is made up of five subunit kringle molecules (Pg-K1 to Pg-K5), of which the first three make the protein angiostatin. VEK-30 is a domain of the group A streptococcal protein PAM. It binds to Pg-K2 of angiostatin and activates the molecule to mediate its anti-angiogenic effects. VEK-30 binds to angiostatin via a C-terminal lysine with argininyl and glutamyl side chain residues known as a 'through space isostere' [].; PDB: 2KJ4_B 2DOI_B 2DOH_C 1I5K_D.
Probab=28.67 E-value=50 Score=19.19 Aligned_cols=11 Identities=27% Similarity=0.631 Sum_probs=8.4
Q ss_pred HHHHHHHHHHH
Q 025097 15 QAKLEHVRKQN 25 (258)
Q Consensus 15 ~~EL~rv~eEN 25 (258)
.+||+|+++|-
T Consensus 2 ~aeLerLkner 12 (17)
T PF12107_consen 2 EAELERLKNER 12 (17)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHhc
Confidence 46888888774
No 128
>PHA02557 22 prohead core protein; Provisional
Probab=28.58 E-value=57 Score=31.10 Aligned_cols=34 Identities=15% Similarity=0.297 Sum_probs=24.6
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 2 DSHNSPKEKMKLLQAKLEHVRKQNENLRHLVKAM 35 (258)
Q Consensus 2 ~~~~~~eee~~~L~~EL~rv~eEN~rL~~mL~~~ 35 (258)
|++.+|.+++...+.||.++.+||..|++-++.+
T Consensus 141 dvV~em~~~L~E~e~~~~~l~~en~~l~e~i~~~ 174 (271)
T PHA02557 141 DVVAEMEEELDEMEEELNELFEENVALEEYINEV 174 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777777888888888888888776643
No 129
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=28.38 E-value=1.7e+02 Score=23.78 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 47 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 47 (258)
.+++..|..|+.++...-.+|...|+.|......|..-|.
T Consensus 56 ~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~ 95 (116)
T PF05064_consen 56 GEKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLD 95 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577899999999999999999999999888777766443
No 130
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=28.22 E-value=2.5e+02 Score=25.02 Aligned_cols=43 Identities=16% Similarity=0.352 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 51 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 51 (258)
..+..++.||..++-|++-|..-+..+-.-+..|...|...+.
T Consensus 93 ~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~ 135 (201)
T PF13851_consen 93 ARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQ 135 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888888888888888888888877776654
No 131
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=27.91 E-value=1.7e+02 Score=23.30 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025097 18 LEHVRKQNENLRHLVKAMNNQC 39 (258)
Q Consensus 18 L~rv~eEN~rL~~mL~~~~~~y 39 (258)
+-|--.||.+|++.|.++-.-|
T Consensus 46 vtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 46 VTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344578888888888777666
No 132
>PRK14163 heat shock protein GrpE; Provisional
Probab=27.86 E-value=2.2e+02 Score=26.13 Aligned_cols=42 Identities=14% Similarity=0.181 Sum_probs=30.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHE 48 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~ 48 (258)
.+...+.|+++|..+.+|...|+..|-++...|..++.++..
T Consensus 38 ~~~~~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~k 79 (214)
T PRK14163 38 DAAATAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVER 79 (214)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567888888888888888887777776666666655443
No 133
>PF14645 Chibby: Chibby family
Probab=27.77 E-value=1.5e+02 Score=24.60 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 12 KLLQAKLEHVRKQNENLRHLVKAMNNQCNDL 42 (258)
Q Consensus 12 ~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~L 42 (258)
.....|..++++||++|++=-..+.=+|.-|
T Consensus 67 ~~~~~~~~~l~~~n~~L~EENN~Lklk~elL 97 (116)
T PF14645_consen 67 TADGEENQRLRKENQQLEEENNLLKLKIELL 97 (116)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999998544444444333
No 134
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.67 E-value=2.5e+02 Score=24.39 Aligned_cols=40 Identities=15% Similarity=0.336 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNE----NLRHLVKAMNNQCNDLLARIHEA 49 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~----rL~~mL~~~~~~y~~Lq~~l~~~ 49 (258)
|++.++.+|+.-+.|-. +=.+||+.+..+|..|+.|+..-
T Consensus 42 ELe~~K~~ld~~rqel~~HFa~sAeLlktl~~dYqklyqHmA~s 85 (138)
T COG3105 42 ELEKVKAQLDEYRQELVKHFARSAELLKTLAQDYQKLYQHMAKS 85 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555554444432 34689999999999999998754
No 135
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=27.51 E-value=2.5e+02 Score=23.39 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025097 11 MKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 52 (258)
Q Consensus 11 ~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 52 (258)
++.|.++|++.-.|..-|+.-|..+...-..|...|..++..
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~ 59 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEE 59 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666555543
No 136
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=27.20 E-value=2.6e+02 Score=24.17 Aligned_cols=38 Identities=8% Similarity=0.086 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 47 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 47 (258)
+.+.|++|..+..+.-++=++.|..+...+.+||+-+.
T Consensus 2 ~~~~Le~ek~~~~~rI~~K~~~LqEL~~Q~va~knLv~ 39 (142)
T PF08781_consen 2 ECEELEEEKQRRRERIKKKKEQLQELILQQVAFKNLVQ 39 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999888888888888888888888888887443
No 137
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=27.06 E-value=2.7e+02 Score=23.04 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 12 KLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 47 (258)
Q Consensus 12 ~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 47 (258)
+.|.+++.++..++.+|...+..+.+....++..+.
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~ 90 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERELA 90 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555544444444433
No 138
>PRK14147 heat shock protein GrpE; Provisional
Probab=26.56 E-value=1.9e+02 Score=25.40 Aligned_cols=43 Identities=14% Similarity=0.117 Sum_probs=28.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 5 NSPKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 47 (258)
Q Consensus 5 ~~~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 47 (258)
+....+.+.|++||..+.+|...|+..+-+....|...+.++.
T Consensus 14 ~~~~~~~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~ 56 (172)
T PRK14147 14 AQNPPETDPLKAEVESLRSEIALVKADALRERADLENQRKRIA 56 (172)
T ss_pred cCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556678888888888888877776666655555555443
No 139
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=26.50 E-value=2.9e+02 Score=21.04 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025097 12 KLLQAKLEHVRKQNENLRHL 31 (258)
Q Consensus 12 ~~L~~EL~rv~eEN~rL~~m 31 (258)
..+.+-+.-++.||.+|++-
T Consensus 14 ~~aveti~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 14 QQAVETIALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 140
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=26.43 E-value=1.2e+02 Score=32.66 Aligned_cols=43 Identities=19% Similarity=0.331 Sum_probs=36.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 5 NSPKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 47 (258)
Q Consensus 5 ~~~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 47 (258)
+.+...+..+++|+.++..|-..|++||+..-..-+.||..+.
T Consensus 360 ~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie 402 (775)
T PF10174_consen 360 EKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIE 402 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677889999999999999999999988888888888843
No 141
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=26.33 E-value=2.6e+02 Score=25.19 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 51 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 51 (258)
++...|.+|++.+..|.+.|+.-...+...-..++..+.++-.
T Consensus 49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~ 91 (251)
T PF11932_consen 49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQ 91 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666666555566655555533
No 142
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=26.22 E-value=1.2e+02 Score=24.49 Aligned_cols=23 Identities=0% Similarity=-0.019 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025097 11 MKLLQAKLEHVRKQNENLRHLVK 33 (258)
Q Consensus 11 ~~~L~~EL~rv~eEN~rL~~mL~ 33 (258)
+..+++|+.++..|+++|+.=++
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~d 95 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENE 95 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666664433
No 143
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=26.14 E-value=2.2e+02 Score=22.89 Aligned_cols=30 Identities=17% Similarity=0.376 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLVKAMNNQ 38 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL~~~~~~ 38 (258)
.++..|+.|+..+..||.+|+.-|+...+-
T Consensus 49 k~v~~L~~e~~~l~~E~e~L~~~l~~e~~E 78 (87)
T PF12709_consen 49 KKVDELENENKALKRENEQLKKKLDTEREE 78 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888766543
No 144
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=26.09 E-value=1.1e+02 Score=23.36 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNEN 27 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~r 27 (258)
++.++.|++|+.|++.|-.+
T Consensus 31 ~eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 31 EERIALLQAEIERLKAELAK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34556667777776666544
No 145
>PRK01203 prefoldin subunit alpha; Provisional
Probab=25.93 E-value=2.7e+02 Score=23.75 Aligned_cols=42 Identities=24% Similarity=0.376 Sum_probs=34.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEAN 50 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~ 50 (258)
.+++++.|.+.++.+..--.+...+|..+.++|+.|. +.++.
T Consensus 85 ~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~--~~~~~ 126 (130)
T PRK01203 85 RERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY--ITEAT 126 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHh
Confidence 4567888888888888888888889999999998887 55543
No 146
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=25.87 E-value=2.5e+02 Score=23.98 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 025097 12 KLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTY 53 (258)
Q Consensus 12 ~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~~ 53 (258)
..++++..-+.+|-+||.+.-....+.-..|+.-|.+.|...
T Consensus 50 k~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~~ 91 (162)
T PF05565_consen 50 KNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEAA 91 (162)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 457888889999999999999999999999999999999875
No 147
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=25.76 E-value=1.8e+02 Score=24.66 Aligned_cols=34 Identities=21% Similarity=0.383 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLL 43 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq 43 (258)
++..|..|+..+.+|.+.|+.-+..+......|.
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLS 106 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555555555555554444444444443
No 148
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=25.70 E-value=2.6e+02 Score=25.77 Aligned_cols=37 Identities=14% Similarity=0.207 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 11 MKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 47 (258)
Q Consensus 11 ~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 47 (258)
++.++.|++.+..|-..+.+-|..|..+++.|-.-+.
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIk 70 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENIIK 70 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555544443
No 149
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=25.58 E-value=2.5e+02 Score=26.86 Aligned_cols=44 Identities=14% Similarity=0.218 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 52 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 52 (258)
+.++.|+++...+......|..++..+.+.|..|+..+..+.+.
T Consensus 151 ~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~ 194 (312)
T smart00787 151 ENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQL 194 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566667777777777777777778888888888887777654
No 150
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=25.37 E-value=1e+02 Score=24.62 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=21.8
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHH
Q 025097 3 SHNSPKEKMKLLQAKLEHVRKQNEN 27 (258)
Q Consensus 3 ~~~~~eee~~~L~~EL~rv~eEN~r 27 (258)
.|+.++|..+.|+.|+++.+++-|+
T Consensus 62 tFnDcpeA~~eL~~eI~eAK~dLr~ 86 (91)
T PF08285_consen 62 TFNDCPEAAKELQKEIKEAKADLRK 86 (91)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999988665
No 151
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=25.08 E-value=1.1e+02 Score=23.89 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLVK 33 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL~ 33 (258)
+++..|+.+...+.+||..|+.++.
T Consensus 75 ~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 75 EQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456666666667777777766653
No 152
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=25.03 E-value=2.9e+02 Score=24.14 Aligned_cols=41 Identities=17% Similarity=0.283 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEAN 50 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~ 50 (258)
+.+.|+.||..|+.+-...-.-.+.+...|...+.+|.++-
T Consensus 28 E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS 68 (159)
T PF05384_consen 28 EYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVS 68 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777666666666667777777777777663
No 153
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=24.85 E-value=2.3e+02 Score=26.15 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=30.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLAR 45 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~ 45 (258)
.++.+..++.+|++..+.+.+|+++...+-+++..|+.-
T Consensus 34 i~~~l~~~~~~l~~~~~~~~~lk~l~~~~~~~~~~l~hl 72 (243)
T PF07160_consen 34 IEELLNDIEQELQREEEALPKLKELMESSEEQQKKLQHL 72 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667778888888888888888888888888777653
No 154
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=24.83 E-value=95 Score=28.33 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLV 32 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL 32 (258)
++..|++...|+++||+.|++..
T Consensus 56 EIR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 56 EIRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666667777777654
No 155
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=24.70 E-value=2.5e+02 Score=23.35 Aligned_cols=38 Identities=13% Similarity=0.153 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLAR 45 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~ 45 (258)
++++..|++||.|-.+.-+|+.+-++..-..-..++.+
T Consensus 41 kEEi~eLK~ElqRKe~Ll~Kh~~kI~~w~~lL~d~~~~ 78 (106)
T PF11594_consen 41 KEEINELKEELQRKEQLLQKHYEKIDYWEKLLSDAQNQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 156
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=24.39 E-value=2.3e+02 Score=23.13 Aligned_cols=36 Identities=22% Similarity=0.421 Sum_probs=17.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDL 42 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~L 42 (258)
++.++..|.+.++.++++-..|...+..+...-..+
T Consensus 4 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~ 39 (140)
T PRK03947 4 SEQELEELAAQLQALQAQIEALQQQLEELQASINEL 39 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544444444333333
No 157
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=24.32 E-value=2e+02 Score=22.62 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLA 44 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~ 44 (258)
....|++|+.+|.+.-.||.+-|+..-..+..|..
T Consensus 33 ~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~ 67 (89)
T PF13747_consen 33 KRDELEEEIQRLDADRSRLAQELDQAEARANRLEE 67 (89)
T ss_pred hhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHH
Confidence 44678999999999999999999988777766654
No 158
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=24.00 E-value=2e+02 Score=22.94 Aligned_cols=23 Identities=9% Similarity=0.164 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLV 32 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL 32 (258)
++.....|.-|+.+||++|+.+-
T Consensus 45 evtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 45 EVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566666666666666544
No 159
>PRK14162 heat shock protein GrpE; Provisional
Probab=23.99 E-value=2.6e+02 Score=25.22 Aligned_cols=38 Identities=11% Similarity=0.232 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 47 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 47 (258)
+++.|+++|..+.+++..|++.+-++...|..++.+..
T Consensus 40 e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~ 77 (194)
T PRK14162 40 PVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYA 77 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888887777777666666655544
No 160
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=23.89 E-value=2.3e+02 Score=27.75 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=25.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 4 HNSPKEKMKLLQAKLEHVRKQNENLRHLVKAMN 36 (258)
Q Consensus 4 ~~~~eee~~~L~~EL~rv~eEN~rL~~mL~~~~ 36 (258)
-|--+..++.|..||-||+||-+.+.+-|..--
T Consensus 3 ~~~dk~ri~~li~~la~~~~~~e~~~~~~~~~~ 35 (328)
T PF15369_consen 3 CPEDKRRIANLIKELARVSEEKEVTEERLKAEQ 35 (328)
T ss_pred ChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344556688999999999999888877776433
No 161
>PRK14155 heat shock protein GrpE; Provisional
Probab=23.84 E-value=1.8e+02 Score=26.41 Aligned_cols=43 Identities=7% Similarity=0.061 Sum_probs=30.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 49 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 49 (258)
..++.+.|+.||..+.+|...|++.+-++...|..++.+...-
T Consensus 11 ~~~~~~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE 53 (208)
T PRK14155 11 GPFEADDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAERE 53 (208)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445578888888888888888887777776666666655433
No 162
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.63 E-value=3.4e+02 Score=21.35 Aligned_cols=34 Identities=26% Similarity=0.431 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLL 43 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq 43 (258)
.+..|+-|+++++|+|..|+.-.......-.+|+
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~ 52 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALE 52 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Confidence 3466888999999999887765554444444443
No 163
>PRK14161 heat shock protein GrpE; Provisional
Probab=23.61 E-value=2.5e+02 Score=24.84 Aligned_cols=37 Identities=8% Similarity=0.223 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 11 MKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 47 (258)
Q Consensus 11 ~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 47 (258)
++.+++||..+.+|...|++.+-++...|..++.+..
T Consensus 21 ~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ 57 (178)
T PRK14161 21 VETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLE 57 (178)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667776666666666666555555555544433
No 164
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=23.54 E-value=2.8e+02 Score=22.11 Aligned_cols=40 Identities=10% Similarity=0.183 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 025097 14 LQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTY 53 (258)
Q Consensus 14 L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~~ 53 (258)
-.+|+..|...--+|...|+.+-++-..|..+|.++++.+
T Consensus 24 ~~~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesn 63 (83)
T PF03670_consen 24 DEEEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESN 63 (83)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3567777777777788888888888888888888887643
No 165
>PF10198 Ada3: Histone acetyltransferases subunit 3; InterPro: IPR019340 This entry is found in Ada3 and homologous proteins which function as part of histone acetyltransferase complexes []. Ada3 is an essential component of the Ada transcriptional coactivator (alteration/deficiency in activation) complex. It plays a key role in linking histone acetyltransferase-containing complexes to p53 (tumour suppressor protein) thereby regulating p53 acetylation, stability and transcriptional activation following DNA damage [].
Probab=23.30 E-value=2.3e+02 Score=23.87 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVKAMNNQC 39 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~~~~~~y 39 (258)
++-.|+.||..+...|...+..|-.++..-
T Consensus 41 eLR~lQ~eLr~~~~~N~~rk~rL~~~~~e~ 70 (131)
T PF10198_consen 41 ELRRLQAELREQSAHNNARKKRLLKIAKEE 70 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346799999999999998888888776543
No 166
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=23.05 E-value=3.2e+02 Score=24.13 Aligned_cols=27 Identities=22% Similarity=0.473 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVKAMN 36 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~~~~ 36 (258)
-+...+--+.+++++|++|+.-|+.+.
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li 67 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELI 67 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677788999999999998888664
No 167
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=23.01 E-value=2.1e+02 Score=29.22 Aligned_cols=42 Identities=14% Similarity=0.250 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 51 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 51 (258)
+.+.|+.||+.+.+|+++|-.-|..+.+.-..|-.++.+.-.
T Consensus 177 ~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~ 218 (447)
T KOG2751|consen 177 SEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEF 218 (447)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999888777777777777644
No 168
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=22.96 E-value=2.9e+02 Score=21.37 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025097 13 LLQAKLEHVRKQNENLRHLVKAM 35 (258)
Q Consensus 13 ~L~~EL~rv~eEN~rL~~mL~~~ 35 (258)
+|+.||..++.-|.-+..+++.+
T Consensus 2 aL~kEL~~Lr~IN~~ie~~~~~L 24 (78)
T PF08651_consen 2 ALEKELEQLRKINPVIEGLIETL 24 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888888888888777776643
No 169
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.88 E-value=2e+02 Score=28.06 Aligned_cols=37 Identities=11% Similarity=0.249 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025097 16 AKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 52 (258)
Q Consensus 16 ~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 52 (258)
|++.-+.+||++|-.-+..+.+.|..++.+|.++.+-
T Consensus 211 e~~Q~~E~En~~l~~~~n~~~devrqie~~lvEI~~L 247 (316)
T KOG3894|consen 211 EQVQLLETENQRLLNELNELLDEVRQIEKRLVEISAL 247 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777777777777777777777777776543
No 170
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=22.75 E-value=2.3e+02 Score=30.87 Aligned_cols=45 Identities=20% Similarity=0.230 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhc
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVK---AMNNQCNDLLARIHEANRT 52 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~---~~~~~y~~Lq~~l~~~~~~ 52 (258)
+.....|.+||-.+..||.+|++-.+ .|...|.+|+.+...+++-
T Consensus 879 e~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a~Lqm 926 (961)
T KOG4673|consen 879 ESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAAALQM 926 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34456788899999999999987544 5668889999888877663
No 171
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=22.75 E-value=2.9e+02 Score=26.04 Aligned_cols=31 Identities=13% Similarity=0.297 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLVKAMNNQC 39 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y 39 (258)
++++.|++||..+..+...++.-|..+...-
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el 239 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEEL 239 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555554444443333333
No 172
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=22.70 E-value=1.1e+02 Score=29.18 Aligned_cols=32 Identities=9% Similarity=0.221 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 11 MKLLQAKLEHVRKQNENLRHLVKAMNNQCNDL 42 (258)
Q Consensus 11 ~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~L 42 (258)
++..+++|...+.+-.+|..-|..+...|...
T Consensus 230 l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~ 261 (344)
T PF12777_consen 230 LEEAEEQLAEKQAELAELEEKLAALQKEYEEA 261 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433
No 173
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=22.52 E-value=3e+02 Score=24.31 Aligned_cols=24 Identities=4% Similarity=0.025 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 24 QNENLRHLVKAMNNQCNDLLARIH 47 (258)
Q Consensus 24 EN~rL~~mL~~~~~~y~~Lq~~l~ 47 (258)
+.+.+++.+...++|...|+..+.
T Consensus 143 ~~~~~~~~anrwTDNI~~l~~~~~ 166 (188)
T PF03962_consen 143 EIKIAKEAANRWTDNIFSLKSYLK 166 (188)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 333333344444444444444433
No 174
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=22.39 E-value=3.1e+02 Score=25.00 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARI 46 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l 46 (258)
++...|+..+.-+-+.|.+|.+=+..++..+..||.-+
T Consensus 22 ~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal 59 (193)
T PF14662_consen 22 DENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQAL 59 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777777777777777777776433
No 175
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=22.21 E-value=3.4e+02 Score=26.63 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=19.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 6 SPKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARI 46 (258)
Q Consensus 6 ~~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l 46 (258)
++-.+...|.+++.++..+++.|..-+..+.+..+.|+.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (398)
T PTZ00454 12 STTHTERDLYEKLKELEKELEFLDIQEEYIKEEQKNLKREL 52 (398)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555444444444444444444444433
No 176
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=22.04 E-value=2.6e+02 Score=29.02 Aligned_cols=42 Identities=19% Similarity=0.191 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 025097 12 KLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTY 53 (258)
Q Consensus 12 ~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~~ 53 (258)
+..+..|.+-+.|++-|-.-|..+..+|..||-+.+.-|++.
T Consensus 400 a~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqK 441 (527)
T PF15066_consen 400 ANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQK 441 (527)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 455678888899999999999999999999999998877753
No 177
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.00 E-value=3e+02 Score=25.95 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVKAMN----NQCNDLLARIHEA 49 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~~~~----~~y~~Lq~~l~~~ 49 (258)
++..+++++.++..|-+.|..-|+... +.+++|+.++..+
T Consensus 58 e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l 101 (247)
T COG3879 58 ELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKL 101 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Confidence 344556666666666666666666655 5555666544433
No 178
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=21.92 E-value=1.9e+02 Score=20.62 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHH
Q 025097 12 KLLQAKLEHVRKQNEN-------LRHLVKAM 35 (258)
Q Consensus 12 ~~L~~EL~rv~eEN~r-------L~~mL~~~ 35 (258)
+.|..+|.+..++|.+ |++-++.+
T Consensus 3 eeL~~~l~~~e~~~~~k~~~v~eLe~YiD~L 33 (48)
T PF09457_consen 3 EELISLLKKQEEENARKDSRVRELEDYIDNL 33 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777 66655543
No 179
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=21.80 E-value=2.3e+02 Score=30.20 Aligned_cols=42 Identities=19% Similarity=0.387 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHh
Q 025097 10 KMKLLQAKLEHVRKQNENLRHL--------------VKAMNNQCNDLLARIHEANR 51 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~m--------------L~~~~~~y~~Lq~~l~~~~~ 51 (258)
+++.|++||...+..-+.|+.. |.++-..+..||..+..+++
T Consensus 426 dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~ 481 (697)
T PF09726_consen 426 DVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQ 481 (697)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555554444444455555 55677778888888888875
No 180
>PRK10698 phage shock protein PspA; Provisional
Probab=21.76 E-value=3.7e+02 Score=24.30 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTY 53 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~~ 53 (258)
+++..|+.++......-.+|+..|..+..++..++..-..++.+.
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~ 143 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRH 143 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777777777777666666543
No 181
>PRK14160 heat shock protein GrpE; Provisional
Probab=21.71 E-value=3.3e+02 Score=24.90 Aligned_cols=41 Identities=12% Similarity=0.185 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHE 48 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~ 48 (258)
++++..|+++|..+.++...|+..+-++...|...+.++..
T Consensus 60 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~k 100 (211)
T PRK14160 60 KDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAK 100 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777777777776666666655543
No 182
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=21.54 E-value=3.8e+02 Score=23.65 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVK 33 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~ 33 (258)
..+++.|+.|+.++.++-..|+.-|.
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~ 93 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIE 93 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666655555555555544
No 183
>PF04822 Takusan: Takusan; InterPro: IPR006907 This family includes several uncharacterised muridae (mouse and rat) proteins.
Probab=21.54 E-value=2.5e+02 Score=22.18 Aligned_cols=42 Identities=17% Similarity=0.316 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLVKAMN---------NQCNDLLARIHEAN 50 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL~~~~---------~~y~~Lq~~l~~~~ 50 (258)
.+++.|..||+.|..|-..|+..|.-+. -.|.-|..+=.++|
T Consensus 19 k~lE~L~~eL~~it~ERnELr~~L~~~~~~~~n~R~n~~ye~Lk~q~~~vM 69 (84)
T PF04822_consen 19 KELERLKFELQKITKERNELRDILALYTEGSLNNRPNPEYEMLKSQHEEVM 69 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCChHHHHHHHHHHHHH
Confidence 4688999999999999999999998554 35666655544444
No 184
>smart00340 HALZ homeobox associated leucin zipper.
Probab=21.51 E-value=2.2e+02 Score=20.27 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 12 KLLQAKLEHVRKQNENLRHLVKAM 35 (258)
Q Consensus 12 ~~L~~EL~rv~eEN~rL~~mL~~~ 35 (258)
+-|+.=-+.+.+||+||..-|..+
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eL 31 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQEL 31 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555667778888877655544
No 185
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=21.43 E-value=2.7e+02 Score=26.63 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=22.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHH
Q 025097 5 NSPKEKMKLLQAKLEHVRKQNENLRH 30 (258)
Q Consensus 5 ~~~eee~~~L~~EL~rv~eEN~rL~~ 30 (258)
+.|+..++.++-|+..+-|||++|..
T Consensus 86 DrKKaRm~eme~~i~dL~een~~L~~ 111 (292)
T KOG4005|consen 86 DRKKARMEEMEYEIKDLTEENEILQN 111 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999974
No 186
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=21.42 E-value=2.7e+02 Score=21.46 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=16.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAM 35 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~ 35 (258)
..+++..|+++|+.+..+-.++..-+..+
T Consensus 68 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~ 96 (104)
T PF13600_consen 68 DSPELKELEEELEALEDELAALQDEIQAL 96 (104)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666555554444
No 187
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=21.42 E-value=2.7e+02 Score=21.72 Aligned_cols=44 Identities=18% Similarity=0.329 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Q 025097 8 KEKMKLLQAKLEHVRKQNEN---LRHLVKAMNNQCNDLLARIHEANR 51 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~r---L~~mL~~~~~~y~~Lq~~l~~~~~ 51 (258)
++++.+|+..+..+++--.. |..-|+++...-..|+.++.++.+
T Consensus 17 d~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~ 63 (75)
T PF05531_consen 17 DDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQD 63 (75)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554333 444456666666777777666543
No 188
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=21.28 E-value=2.3e+02 Score=22.82 Aligned_cols=24 Identities=33% Similarity=0.355 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLV 32 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL 32 (258)
+++..|+.||.++..||.=|+..+
T Consensus 78 ~ei~~L~~el~~L~~E~diLKKa~ 101 (121)
T PRK09413 78 KQIKELQRLLGKKTMENELLKEAV 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555443
No 189
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=21.17 E-value=44 Score=29.50 Aligned_cols=7 Identities=43% Similarity=0.743 Sum_probs=4.0
Q ss_pred HHHHHHH
Q 025097 12 KLLQAKL 18 (258)
Q Consensus 12 ~~L~~EL 18 (258)
+.|++||
T Consensus 17 alLE~EL 23 (166)
T PF04880_consen 17 ALLESEL 23 (166)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4566666
No 190
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=21.12 E-value=2.6e+02 Score=26.66 Aligned_cols=41 Identities=10% Similarity=0.183 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025097 11 MKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 51 (258)
Q Consensus 11 ~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 51 (258)
...|..|...+..|+.+...+-+.+-..|..||.|=-.+..
T Consensus 52 ~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lke 92 (309)
T PF09728_consen 52 QEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKE 92 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666777777777777777778888777655543
No 191
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=21.10 E-value=4.6e+02 Score=21.85 Aligned_cols=47 Identities=15% Similarity=0.255 Sum_probs=25.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhcC
Q 025097 7 PKEKMKLLQAKLEHVRKQNENL-------RHLVKAMNNQCNDLLARIHEANRTY 53 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL-------~~mL~~~~~~y~~Lq~~l~~~~~~~ 53 (258)
++++++.+..-|..+.++-..| ..-|..+..++..|+.++..++.+.
T Consensus 42 Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~ 95 (141)
T PF13874_consen 42 QEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQ 95 (141)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554444 3344455677777888887777653
No 192
>KOG4191 consensus Histone acetyltransferases PCAF/SAGA/ADA, subunit TADA3L/NGG1 [Chromatin structure and dynamics]
Probab=21.08 E-value=1.5e+02 Score=30.50 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVKAMNNQ 38 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~~~~~~ 38 (258)
++..|++||.-|+.+|++-+.-|-+|...
T Consensus 409 eLR~lqaeLk~vS~~N~k~k~~Ll~la~e 437 (516)
T KOG4191|consen 409 ELRKLQAELKAVSAHNRKKKHDLLRLAPE 437 (516)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhHH
Confidence 34678999999999999988888777643
No 193
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=21.06 E-value=4e+02 Score=21.21 Aligned_cols=40 Identities=18% Similarity=0.388 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 47 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 47 (258)
++..+.|+..+..+.+.-++|...|..+.+.+..++..+.
T Consensus 85 ~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 85 EEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556778888888888888888888888888887776653
No 194
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=20.93 E-value=96 Score=26.06 Aligned_cols=35 Identities=11% Similarity=0.159 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLA 44 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~ 44 (258)
++..|++-|.....|-.-|+..|..+.+--.+||.
T Consensus 9 ~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~l 43 (114)
T COG4467 9 QVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRL 43 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 34445555555555555555555555555555554
No 195
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=20.90 E-value=2.4e+02 Score=28.96 Aligned_cols=38 Identities=21% Similarity=0.203 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARI 46 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l 46 (258)
+++..+.+|=..++|||.||...|-.-.+.-.+|=.|+
T Consensus 278 ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~l 315 (552)
T KOG2129|consen 278 EKLMQYRAEEVDHREENERLQRKLINELERREALCRML 315 (552)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555566666677777777776665555444444443
No 196
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=20.90 E-value=3.1e+02 Score=22.89 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 025097 12 KLLQAKLEHVRKQNENLRHL--VKAMNNQCNDLLARIHEA 49 (258)
Q Consensus 12 ~~L~~EL~rv~eEN~rL~~m--L~~~~~~y~~Lq~~l~~~ 49 (258)
=+|-.||++.+...+.|... ...+......|+.+|...
T Consensus 70 LALLDElE~~~~~i~~~~~~~e~~~~a~~~~~l~~~Le~a 109 (139)
T PF13935_consen 70 LALLDELERAQQRIAELEQECENEDIALDVQKLRVELEAA 109 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999877 777777787787777654
No 197
>PRK14154 heat shock protein GrpE; Provisional
Probab=20.85 E-value=2.8e+02 Score=25.29 Aligned_cols=38 Identities=13% Similarity=0.262 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 47 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 47 (258)
+.+.|++||..+.++...|+..+-++...|..++.+..
T Consensus 53 ~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~ 90 (208)
T PRK14154 53 SREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIE 90 (208)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888777777666666655555443
No 198
>PHA02047 phage lambda Rz1-like protein
Probab=20.83 E-value=2.7e+02 Score=22.99 Aligned_cols=36 Identities=8% Similarity=0.128 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 025097 18 LEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTY 53 (258)
Q Consensus 18 L~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~~ 53 (258)
|+--.+|-++|+.-|++....|.++|.|+.++-++.
T Consensus 29 ~g~~h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~ka 64 (101)
T PHA02047 29 LGIAHEEAKRQTARLEALEVRYATLQRHVQAVEART 64 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455578899999999999999999999999987653
No 199
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=20.81 E-value=3.2e+02 Score=27.26 Aligned_cols=44 Identities=16% Similarity=0.301 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 51 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 51 (258)
++.++.+++-|..-.-||+.+..=|.+.-.-|..||.++.++-+
T Consensus 153 KD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe 196 (405)
T KOG2010|consen 153 KDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKE 196 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777777777777777788877776643
No 200
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=20.80 E-value=3.3e+02 Score=24.50 Aligned_cols=39 Identities=21% Similarity=0.305 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 12 KLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEAN 50 (258)
Q Consensus 12 ~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~ 50 (258)
..+.+--..|..||++|+.-|..+...|..|+..-..+-
T Consensus 152 ~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le 190 (206)
T PF14988_consen 152 KSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLE 190 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666778999999999999999999999998766654
No 201
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=20.77 E-value=2.7e+02 Score=28.39 Aligned_cols=42 Identities=14% Similarity=0.275 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 49 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 49 (258)
++.+..+..+|..+.+-.++-+..+.++-+.|..|++.|.+-
T Consensus 118 e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~ 159 (569)
T PRK04778 118 EEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLAN 159 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677778888888888888888888888888888876654
No 202
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=20.62 E-value=2.7e+02 Score=21.93 Aligned_cols=36 Identities=11% Similarity=0.052 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 15 QAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEAN 50 (258)
Q Consensus 15 ~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~ 50 (258)
..||.++..+-+.+...+......+..|...+..+.
T Consensus 2 ~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~ 37 (96)
T PF08647_consen 2 QTELVSMEQAFKELSEQADKKVKELTILEQKKLRLE 37 (96)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666656555555555555555555444443
No 203
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=20.53 E-value=3.2e+02 Score=26.75 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 51 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 51 (258)
+++...|+.+++.+.++|+.|+..+..+...-..|+..+..+..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 21 YEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34566788889999999999999999888888888888877743
No 204
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=20.45 E-value=2.5e+02 Score=28.96 Aligned_cols=47 Identities=19% Similarity=0.218 Sum_probs=40.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTY 53 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~~ 53 (258)
.+.++..|++.+.++.+|-+-++++=..+.++-...+.++.++-.+.
T Consensus 380 ~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~ 426 (493)
T KOG0804|consen 380 VERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEERE 426 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 46677889999999999999999998899999999998888876543
No 205
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=20.26 E-value=4e+02 Score=24.38 Aligned_cols=45 Identities=22% Similarity=0.347 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 52 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 52 (258)
++.++.++.++..+.+--.+|+..|..+-.++..|..+...+..+
T Consensus 98 e~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar 142 (225)
T COG1842 98 EDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKAR 142 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888888888888888888888888888888887777654
No 206
>PF02370 M: M protein repeat; InterPro: IPR003345 This short repeat is found in multiple copies in bacterial M proteins. The M proteins bind to IgA and are closely associated with virulence. The M protein has been postulated to be a major group A streptococcal (GAS) virulence factor because of its contribution to the bacterial resistance to opsonophagocytosis [].; PDB: 2KK9_A.
Probab=20.22 E-value=1.8e+02 Score=17.75 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025097 12 KLLQAKLEHVRKQNENLR 29 (258)
Q Consensus 12 ~~L~~EL~rv~eEN~rL~ 29 (258)
..|++++..+.+|.+.|+
T Consensus 4 k~lEa~~qkLe~e~q~~e 21 (21)
T PF02370_consen 4 KQLEADHQKLEAEKQISE 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 568899999999888764
No 207
>PF14282 FlxA: FlxA-like protein
Probab=20.20 E-value=3.2e+02 Score=21.92 Aligned_cols=41 Identities=22% Similarity=0.387 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025097 11 MKLLQAKLEHVRK-QN---ENLRHLVKAMNNQCNDLLARIHEANR 51 (258)
Q Consensus 11 ~~~L~~EL~rv~e-EN---~rL~~mL~~~~~~y~~Lq~~l~~~~~ 51 (258)
+..|.++|..|.. +. +.-......|-..-..|+.||..+..
T Consensus 28 i~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~ 72 (106)
T PF14282_consen 28 IKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQS 72 (106)
T ss_pred HHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444544444 11 22233444455555666666666544
No 208
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=20.18 E-value=2.9e+02 Score=28.20 Aligned_cols=42 Identities=14% Similarity=0.301 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 49 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 49 (258)
++++..+..||..+.+-.++-+..+..+-+.|..|+..|.+-
T Consensus 114 e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~ 155 (560)
T PF06160_consen 114 EEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAH 155 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777777777777888888889999999887765
No 209
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=20.16 E-value=3.9e+02 Score=25.25 Aligned_cols=44 Identities=23% Similarity=0.387 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 51 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 51 (258)
++.++.|+.++..+.+...+|.+.+..+.+.|..|...+..+-+
T Consensus 155 ~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~ 198 (325)
T PF08317_consen 155 EENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQ 198 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666677777777777776665544
Done!