Query 025097
Match_columns 258
No_of_seqs 238 out of 741
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 03:41:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025097.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025097hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 9.4E-36 3.2E-40 226.9 6.9 75 83-161 1-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 7.2E-35 2.5E-39 223.0 5.7 74 84-161 5-78 (78)
3 3m91_A Proteasome-associated A 91.4 0.82 2.8E-05 32.1 7.0 42 8-49 8-49 (51)
4 2zxx_A Geminin; coiled-coil, c 87.8 0.76 2.6E-05 35.0 4.8 28 10-37 42-69 (79)
5 2rpr_A Flywch-type zinc finger 87.4 0.45 1.5E-05 35.3 3.4 53 95-160 21-74 (87)
6 1ci6_A Transcription factor AT 84.9 2.4 8.3E-05 30.2 6.0 42 7-48 21-62 (63)
7 1t2k_D Cyclic-AMP-dependent tr 83.2 3.1 0.00011 29.2 5.9 41 7-47 20-60 (61)
8 2wt7_A Proto-oncogene protein 82.9 4.3 0.00015 28.8 6.6 41 7-47 21-61 (63)
9 2oxj_A Hybrid alpha/beta pepti 81.3 2.3 7.8E-05 27.7 4.2 26 8-33 7-32 (34)
10 1wrd_A TOM1, target of MYB pro 81.3 4.3 0.00015 31.5 6.7 44 9-52 6-65 (103)
11 1jnm_A Proto-oncogene C-JUN; B 80.1 2 6.8E-05 30.3 4.0 41 7-47 20-60 (62)
12 3c3f_A Alpha/beta peptide with 77.3 3.6 0.00012 26.7 4.2 26 8-33 7-32 (34)
13 1kd8_B GABH BLL, GCN4 acid bas 77.3 4.2 0.00014 26.8 4.5 27 8-34 7-33 (36)
14 1uii_A Geminin; human, DNA rep 77.1 3.2 0.00011 31.9 4.6 24 11-34 55-78 (83)
15 2r2v_A GCN4 leucine zipper; co 75.9 4.6 0.00016 26.3 4.3 26 8-33 7-32 (34)
16 1wlq_A Geminin; coiled-coil; 2 75.0 3.2 0.00011 31.9 4.1 26 10-35 46-71 (83)
17 2wt7_B Transcription factor MA 74.7 3.3 0.00011 32.1 4.2 36 8-43 54-89 (90)
18 1dh3_A Transcription factor CR 72.6 4.8 0.00016 28.1 4.2 32 8-39 21-52 (55)
19 1uo4_A General control protein 72.1 4.6 0.00016 26.3 3.6 27 7-33 6-32 (34)
20 3m48_A General control protein 72.0 4.6 0.00016 26.1 3.6 27 7-33 5-31 (33)
21 2oa5_A Hypothetical protein BQ 71.4 3 0.0001 33.6 3.3 26 8-33 7-32 (110)
22 3m9b_A Proteasome-associated A 70.4 5.6 0.00019 36.0 5.2 44 8-51 53-96 (251)
23 3s9g_A Protein hexim1; cyclin 70.2 3.6 0.00012 32.7 3.4 22 9-30 65-86 (104)
24 3c3g_A Alpha/beta peptide with 68.6 7.9 0.00027 25.0 4.2 26 8-33 6-31 (33)
25 1zxa_A CGMP-dependent protein 67.3 6 0.00021 29.1 3.9 34 7-40 23-56 (67)
26 2wvr_A Geminin; DNA replicatio 66.4 6.4 0.00022 34.8 4.6 39 10-52 123-161 (209)
27 1hjb_A Ccaat/enhancer binding 66.2 13 0.00046 28.3 5.9 39 11-49 38-76 (87)
28 3hnw_A Uncharacterized protein 66.2 17 0.00057 29.7 6.8 42 8-49 88-129 (138)
29 1kd8_A GABH AIV, GCN4 acid bas 63.7 12 0.00041 24.6 4.3 28 7-34 6-33 (36)
30 1gd2_E Transcription factor PA 63.2 8.2 0.00028 28.4 4.0 27 10-36 37-63 (70)
31 2dgc_A Protein (GCN4); basic d 62.8 11 0.00038 26.8 4.6 32 8-39 29-60 (63)
32 2wq1_A General control protein 62.8 12 0.00041 24.2 4.2 26 8-33 6-31 (33)
33 1oxz_A ADP-ribosylation factor 62.6 21 0.00073 30.6 7.1 45 8-52 68-129 (186)
34 2bni_A General control protein 62.0 8.6 0.00029 25.0 3.4 26 8-33 7-32 (34)
35 1o3x_A ADP-ribosylation factor 61.9 24 0.00084 28.8 7.1 44 9-52 44-104 (140)
36 1naf_A ADP-ribosylation factor 61.3 20 0.00069 30.0 6.6 45 8-52 52-113 (158)
37 1lwu_C Fibrinogen gamma chain; 61.1 19 0.00064 33.4 6.9 47 7-53 10-56 (323)
38 3a7o_A Autophagy protein 16; c 61.0 34 0.0012 25.7 7.0 40 10-49 19-58 (75)
39 1wmi_B RELB, hypothetical prot 60.9 4.8 0.00017 29.5 2.3 24 10-33 5-28 (67)
40 1ykh_B RNA polymerase II holoe 59.9 17 0.0006 29.3 5.8 50 2-51 78-127 (132)
41 1ci6_A Transcription factor AT 59.0 11 0.00037 26.8 3.9 26 9-34 37-62 (63)
42 2j5u_A MREC protein; bacterial 59.0 6 0.00021 34.9 3.1 23 13-35 23-45 (255)
43 2hy6_A General control protein 58.1 17 0.0006 23.6 4.3 26 8-33 7-32 (34)
44 2zqm_A Prefoldin beta subunit 58.0 38 0.0013 25.4 7.2 46 7-52 68-113 (117)
45 1yke_B RNA polymerase II holoe 57.8 19 0.00064 29.9 5.8 51 2-52 78-128 (151)
46 1wr6_A ADP-ribosylation factor 56.4 2.8 9.5E-05 33.3 0.4 41 12-52 4-60 (111)
47 3bas_A Myosin heavy chain, str 56.2 38 0.0013 25.3 6.8 42 8-49 20-61 (89)
48 4dzo_A Mitotic spindle assembl 55.6 20 0.00067 28.8 5.4 35 8-42 3-37 (123)
49 1cz6_A Protein (androctonin); 55.5 3.8 0.00013 24.8 0.9 9 120-128 16-24 (26)
50 1wt6_A Myotonin-protein kinase 55.2 36 0.0012 25.9 6.4 38 12-49 27-64 (81)
51 1gu4_A CAAT/enhancer binding p 55.2 17 0.00058 27.2 4.6 38 10-47 37-74 (78)
52 4h22_A Leucine-rich repeat fli 55.0 29 0.001 27.5 6.1 38 9-46 44-81 (103)
53 1t2k_D Cyclic-AMP-dependent tr 54.7 16 0.00054 25.4 4.2 23 10-32 37-59 (61)
54 3q8t_A Beclin-1; autophagy, AT 54.3 40 0.0014 25.8 6.7 26 11-36 6-31 (96)
55 2yy0_A C-MYC-binding protein; 52.4 26 0.0009 24.3 4.9 29 9-37 19-47 (53)
56 1t6f_A Geminin; coiled-coil, c 52.3 11 0.00038 24.9 2.7 20 11-30 16-35 (37)
57 4etp_A Kinesin-like protein KA 52.0 32 0.0011 32.3 7.0 11 100-110 138-150 (403)
58 2w6b_A RHO guanine nucleotide 49.3 69 0.0023 22.8 7.1 36 10-45 11-46 (56)
59 2akf_A Coronin-1A; coiled coil 49.0 38 0.0013 21.4 4.7 25 13-37 3-27 (32)
60 3u06_A Protein claret segregat 48.6 38 0.0013 31.9 7.0 11 100-110 136-148 (412)
61 3a7p_A Autophagy protein 16; c 48.3 52 0.0018 27.6 7.0 43 9-51 68-117 (152)
62 4etp_A Kinesin-like protein KA 47.8 26 0.00089 32.9 5.6 10 40-49 48-57 (403)
63 2wuj_A Septum site-determining 46.0 22 0.00076 24.7 3.7 28 9-36 27-54 (57)
64 3u06_A Protein claret segregat 46.0 34 0.0012 32.3 6.2 33 12-44 6-38 (412)
65 2jee_A YIIU; FTSZ, septum, coi 45.7 79 0.0027 23.9 7.0 28 10-37 21-48 (81)
66 2yy0_A C-MYC-binding protein; 44.9 46 0.0016 23.0 5.2 32 16-47 19-50 (53)
67 4h22_A Leucine-rich repeat fli 43.1 82 0.0028 24.9 7.0 43 8-50 36-78 (103)
68 2wt7_A Proto-oncogene protein 42.6 37 0.0013 23.8 4.5 22 12-33 40-61 (63)
69 1a92_A Delta antigen; leucine 42.5 27 0.00091 24.4 3.6 21 10-30 15-35 (50)
70 1fmh_A General control protein 41.9 49 0.0017 20.9 4.4 30 10-39 2-31 (33)
71 3mtu_E Head morphogenesis prot 41.5 46 0.0016 25.1 5.0 29 9-37 44-72 (77)
72 2oqq_A Transcription factor HY 41.2 36 0.0012 23.0 4.0 23 10-32 18-40 (42)
73 3s9g_A Protein hexim1; cyclin 41.2 65 0.0022 25.5 6.1 39 13-51 41-79 (104)
74 1nkp_B MAX protein, MYC proto- 41.0 23 0.0008 25.8 3.4 30 18-47 49-78 (83)
75 2aze_B Transcription factor E2 40.9 47 0.0016 25.9 5.3 35 8-42 5-39 (106)
76 3v86_A De novo design helix; c 40.8 26 0.00088 21.3 2.9 20 9-28 7-26 (27)
77 3q8t_A Beclin-1; autophagy, AT 39.7 1.1E+02 0.0039 23.2 7.2 34 18-51 41-74 (96)
78 1m1j_C Fibrinogen gamma chain; 39.2 56 0.0019 31.1 6.5 46 7-52 89-134 (409)
79 1gd2_E Transcription factor PA 38.5 59 0.002 23.7 5.2 40 7-46 27-66 (70)
80 2fxo_A Myosin heavy chain, car 37.8 90 0.0031 24.6 6.6 41 8-48 19-59 (129)
81 1fxk_C Protein (prefoldin); ar 37.3 1.1E+02 0.0039 23.5 7.1 46 7-52 86-131 (133)
82 1go4_E MAD1 (mitotic arrest de 36.3 48 0.0017 26.0 4.7 33 3-35 6-38 (100)
83 1hjb_A Ccaat/enhancer binding 36.0 52 0.0018 25.0 4.7 25 12-36 53-77 (87)
84 1fxk_A Prefoldin; archaeal pro 35.8 70 0.0024 23.5 5.4 44 7-50 63-106 (107)
85 1uii_A Geminin; human, DNA rep 35.0 91 0.0031 23.8 5.9 30 18-47 41-70 (83)
86 2c9l_Y EB1, zebra, BZLF1 trans 34.8 18 0.00062 26.0 1.8 17 21-37 34-50 (63)
87 3a5t_A Transcription factor MA 34.3 0.36 1.2E-05 38.5 -7.9 37 11-47 67-103 (107)
88 3hnw_A Uncharacterized protein 34.1 1.3E+02 0.0044 24.3 7.1 39 11-49 77-122 (138)
89 2z5i_A TM, general control pro 33.9 44 0.0015 23.0 3.6 26 10-35 20-45 (52)
90 2wg5_A General control protein 33.5 34 0.0012 26.5 3.4 26 10-35 8-33 (109)
91 1gu4_A CAAT/enhancer binding p 33.4 20 0.0007 26.7 2.0 23 12-34 53-75 (78)
92 2zxx_A Geminin; coiled-coil, c 33.4 25 0.00086 26.6 2.5 27 17-43 28-54 (79)
93 2efr_A General control protein 32.2 1.4E+02 0.0049 24.8 7.2 43 8-50 104-146 (155)
94 2dgc_A Protein (GCN4); basic d 32.2 39 0.0013 24.0 3.2 24 9-32 37-60 (63)
95 1p9i_A Cortexillin I/GCN4 hybr 31.8 62 0.0021 20.2 3.6 22 15-36 5-26 (31)
96 1jnm_A Proto-oncogene C-JUN; B 30.8 23 0.00079 24.7 1.8 21 12-32 39-59 (62)
97 1fzc_C Fibrin; blood coagulati 30.7 26 0.0009 32.3 2.7 46 7-52 2-47 (319)
98 3o0z_A RHO-associated protein 29.6 1E+02 0.0035 26.2 6.0 34 10-43 98-138 (168)
99 3oja_A Leucine-rich immune mol 29.6 1.2E+02 0.004 27.9 6.9 24 12-35 438-461 (487)
100 4ani_A Protein GRPE; chaperone 28.8 1.1E+02 0.0039 26.6 6.3 39 9-47 59-97 (213)
101 2q6q_A Spindle POLE BODY compo 28.6 86 0.0029 23.4 4.6 36 13-48 7-45 (74)
102 2xdj_A Uncharacterized protein 28.5 1.1E+02 0.0039 22.8 5.4 28 15-42 26-53 (83)
103 3l4f_A RHO guanine nucleotide 28.1 1.7E+02 0.0058 21.1 7.0 43 9-51 7-49 (61)
104 3nmd_A CGMP dependent protein 28.0 74 0.0025 23.6 4.2 34 16-49 33-66 (72)
105 2wy7_Q SBI, IGG-binding protei 27.8 27 0.00092 26.0 1.8 41 9-52 30-72 (80)
106 1dh3_A Transcription factor CR 27.6 37 0.0013 23.4 2.4 25 8-32 28-52 (55)
107 2aze_A Transcription factor DP 27.5 1.6E+02 0.0055 24.7 6.7 39 9-47 5-43 (155)
108 2p90_A Hypothetical protein CG 27.4 69 0.0024 29.1 4.9 34 8-41 235-268 (319)
109 1am9_A Srebp-1A, protein (ster 27.1 73 0.0025 23.3 4.1 23 12-34 53-75 (82)
110 3ghg_A Fibrinogen alpha chain; 25.5 1.5E+02 0.0052 29.6 7.1 45 10-54 132-193 (562)
111 1xiw_B T-cell surface glycopro 25.2 16 0.00056 26.8 0.2 28 99-126 17-54 (79)
112 3nmd_A CGMP dependent protein 25.1 88 0.003 23.2 4.2 34 2-36 13-46 (72)
113 3twe_A Alpha4H; unknown functi 24.9 1.2E+02 0.0041 18.4 4.0 21 12-32 4-24 (27)
114 3brv_B NF-kappa-B essential mo 24.8 1.1E+02 0.0037 22.7 4.6 27 16-42 8-38 (70)
115 4emc_A Monopolin complex subun 24.8 95 0.0033 26.9 5.0 40 11-50 15-54 (190)
116 1nlw_A MAD protein, MAX dimeri 24.8 73 0.0025 23.4 3.7 30 18-47 49-78 (80)
117 3vkg_A Dynein heavy chain, cyt 24.7 1.1E+02 0.0039 36.3 6.9 46 7-52 2012-2057(3245)
118 3i00_A HIP-I, huntingtin-inter 24.5 2.3E+02 0.008 22.5 6.9 24 7-30 13-36 (120)
119 3oja_B Anopheles plasmodium-re 24.3 1.7E+02 0.0059 27.3 7.1 28 16-43 537-564 (597)
120 2zdi_C Prefoldin subunit alpha 24.3 2.1E+02 0.0072 22.7 6.7 47 7-53 96-142 (151)
121 1fxk_C Protein (prefoldin); ar 24.1 1E+02 0.0035 23.8 4.7 34 17-50 2-35 (133)
122 4b4t_K 26S protease regulatory 23.6 1.7E+02 0.0057 27.6 6.9 41 9-49 49-89 (428)
123 3f6n_A Virion-associated prote 23.3 1.1E+02 0.0038 25.0 4.8 30 11-40 4-33 (129)
124 1ik9_A DNA repair protein XRCC 23.2 1.4E+02 0.0046 25.9 5.7 34 9-42 132-165 (213)
125 3u59_A Tropomyosin beta chain; 22.9 2.4E+02 0.0083 21.1 6.9 40 9-48 23-62 (101)
126 2l5g_A GPS2 protein, G protein 22.7 94 0.0032 20.5 3.5 18 10-27 16-33 (38)
127 3sjb_C Golgi to ER traffic pro 22.2 2.3E+02 0.0078 21.9 6.2 41 8-48 22-74 (93)
128 2wuj_A Septum site-determining 22.1 55 0.0019 22.7 2.4 23 9-31 34-56 (57)
129 2d7c_C RAB11 family-interactin 22.0 1.3E+02 0.0044 20.1 4.1 23 13-35 5-27 (42)
130 3sja_C Golgi to ER traffic pro 22.0 2.3E+02 0.0079 20.5 5.8 39 9-47 6-56 (65)
131 2wg5_A General control protein 21.6 83 0.0028 24.3 3.6 25 26-50 10-34 (109)
132 1t3j_A Mitofusin 1; coiled coi 21.5 2.9E+02 0.0098 21.4 7.1 39 11-49 49-90 (96)
133 3n7n_E Monopolin complex subun 21.3 20 0.00068 28.1 0.0 22 10-31 51-72 (95)
134 1ez3_A Syntaxin-1A; three heli 20.9 2.2E+02 0.0075 21.3 5.9 15 37-51 95-109 (127)
135 3bas_A Myosin heavy chain, str 20.7 2.6E+02 0.0089 20.6 7.1 42 8-49 13-54 (89)
136 3gp4_A Transcriptional regulat 20.6 3E+02 0.01 21.7 6.9 38 9-46 81-118 (142)
137 2wvr_A Geminin; DNA replicatio 20.2 1.8E+02 0.0063 25.5 5.9 40 12-52 118-157 (209)
138 3m9b_A Proteasome-associated A 20.1 80 0.0027 28.4 3.6 25 12-36 71-95 (251)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=9.4e-36 Score=226.94 Aligned_cols=75 Identities=53% Similarity=0.983 Sum_probs=70.1
Q ss_pred ceEEEecccCCccccccCCccccccCccccCCCCCCcceeecccCCCCCcccccceeecCCCcEEEEEeccccCCCCCC
Q 025097 83 SRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQC 161 (258)
Q Consensus 83 ~rv~v~~~~~d~s~~~~DGy~WRKYGQK~ikgn~~PRsYYRCs~~~~gC~akK~VQr~~~D~~~~~~tY~G~HnH~~p~ 161 (258)
+||.|++.++ ..+++|||+|||||||.|+|+++||+||||++. ||+|+|+|||+++|+.+++|||+|+|||+.|.
T Consensus 1 ~r~~v~t~~~--~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~--gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 1 SRIVVHTQTL--FDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSP--GCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp CEEEEEEECS--SSCCCCSSCEEEEEEECCTTCSSCEEEEEECST--TCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CeEEEEecCC--CCcCCCCchhhhCcccccCCCCCceeEeEcCCC--CCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 5899999875 468899999999999999999999999999985 79999999999999999999999999999885
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=7.2e-35 Score=223.03 Aligned_cols=74 Identities=47% Similarity=0.903 Sum_probs=66.3
Q ss_pred eEEEecccCCccccccCCccccccCccccCCCCCCcceeecccCCCCCcccccceeecCCCcEEEEEeccccCCCCCC
Q 025097 84 RIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQC 161 (258)
Q Consensus 84 rv~v~~~~~d~s~~~~DGy~WRKYGQK~ikgn~~PRsYYRCs~~~~gC~akK~VQr~~~D~~~~~~tY~G~HnH~~p~ 161 (258)
+|.|++.++ ..+++|||+|||||||.|+|+++||+||||++. ||+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus 5 ~~~~~t~s~--~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~--gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 5 SSGVQTTSE--VDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTP--GCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ---CCCCCC--CCCCCSSSCBCCCEEECCTTCSSCEEEEEEECS--SCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred eEEEeccCC--CCcCCCCchhhhCcccccCCCcCeeEEeecCcC--CCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 677888875 367899999999999999999999999999995 79999999999999999999999999999874
No 3
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=91.40 E-value=0.82 Score=32.06 Aligned_cols=42 Identities=17% Similarity=0.277 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 49 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 49 (258)
++.+..|+.++..+.+-|.+|.++|..-...-..|..+|..+
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677788999999999999999999999999999999988776
No 4
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=87.80 E-value=0.76 Score=35.03 Aligned_cols=28 Identities=14% Similarity=0.399 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVKAMNN 37 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~~~~~ 37 (258)
+++.+++|+.++++||+.|++|++.+..
T Consensus 42 ~ie~~~eEi~~LkeEN~~L~el~~~~~~ 69 (79)
T 2zxx_A 42 EIEQKDSEIARLRKENKDLAEVAEHVQY 69 (79)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999987654
No 5
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=87.42 E-value=0.45 Score=35.35 Aligned_cols=53 Identities=19% Similarity=0.407 Sum_probs=34.7
Q ss_pred cccccCCccccccCccccCCCCCCcceeecccCC-CCCcccccceeecCCCcEEEEEeccccCCCCC
Q 025097 95 SLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMAS-SGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQ 160 (258)
Q Consensus 95 s~~~~DGy~WRKYGQK~ikgn~~PRsYYRCs~~~-~gC~akK~VQr~~~D~~~~~~tY~G~HnH~~p 160 (258)
..++-|||...+--+ ...+.|.+|+... .+|+|+-.... + . + ...+.|||++.
T Consensus 21 ~~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~---~-~-~--~~~~~HnH~p~ 74 (87)
T 2rpr_A 21 RFLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG---H-R-I--MVMRSHCHQPD 74 (87)
T ss_dssp EEEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET---T-E-E--EECSCCSSCCC
T ss_pred cEEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC---C-C-E--ECCCCcCCCCc
Confidence 457789998775322 1236899999853 36999855442 2 2 2 35688999764
No 6
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=84.87 E-value=2.4 Score=30.25 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=36.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHE 48 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~ 48 (258)
+.++...|+.++..+..+|..|+.-+..+-.-...|..-|.+
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456788999999999999999999999999888888776654
No 7
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=83.17 E-value=3.1 Score=29.17 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=35.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 47 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 47 (258)
+.+.+..|+.+...+..||..|..-+..+.+....|...|+
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667889999999999999999999999988888887664
No 8
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=82.87 E-value=4.3 Score=28.77 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=34.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 47 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 47 (258)
+.+.+..|+.|...+..+|..|..-+..+.+.+..|...|.
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999999999988888887776553
No 9
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=81.34 E-value=2.3 Score=27.71 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVK 33 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~ 33 (258)
+++++.|-.|=..+..|+.||++||.
T Consensus 7 E~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 7 EXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 67788888888888999999999884
No 10
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=81.32 E-value=4.3 Score=31.49 Aligned_cols=44 Identities=20% Similarity=0.372 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHhc
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLVK----------------AMNNQCNDLLARIHEANRT 52 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL~----------------~~~~~y~~Lq~~l~~~~~~ 52 (258)
++++.+..||+.|+.--+-|.+||+ .+.+.|..+|-.|+.+...
T Consensus 6 eq~~k~~~el~~v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~qp~i~~li~~ 65 (103)
T 1wrd_A 6 EQIGKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQ 65 (103)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5788999999999999999999998 3457788888888888764
No 11
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=80.07 E-value=2 Score=30.34 Aligned_cols=41 Identities=20% Similarity=0.346 Sum_probs=32.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 47 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 47 (258)
+.+.+..|+.+...+..||..|..-+..+.+....|...|+
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999988888877776554
No 12
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=77.32 E-value=3.6 Score=26.74 Aligned_cols=26 Identities=15% Similarity=0.370 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVK 33 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~ 33 (258)
+++++.|-.|...+..|..||+.||.
T Consensus 7 EdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 7 EXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 67888888888888899999998885
No 13
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=77.26 E-value=4.2 Score=26.76 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKA 34 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~ 34 (258)
+++++.|-.|...+..|..||+++|..
T Consensus 7 E~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 7 KAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 678888888888999999999998865
No 14
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=77.07 E-value=3.2 Score=31.86 Aligned_cols=24 Identities=13% Similarity=0.371 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 11 MKLLQAKLEHVRKQNENLRHLVKA 34 (258)
Q Consensus 11 ~~~L~~EL~rv~eEN~rL~~mL~~ 34 (258)
++.|++|+..+++||.+|+++..+
T Consensus 55 ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 55 IEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554443
No 15
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=75.87 E-value=4.6 Score=26.31 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVK 33 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~ 33 (258)
+++++.|-.|...+..|..||+++|.
T Consensus 7 edKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 7 ADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 67888888888888888999999886
No 16
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=74.98 E-value=3.2 Score=31.89 Aligned_cols=26 Identities=15% Similarity=0.438 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVKAM 35 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~~~ 35 (258)
.++.+.+|+.++++||++|+++-.++
T Consensus 46 ~ie~~~eEi~~Lk~en~~L~elA~~~ 71 (83)
T 1wlq_A 46 EIEQKDSEIARLRKENKDLAEVAEHV 71 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777765543
No 17
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=74.74 E-value=3.3 Score=32.06 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLL 43 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq 43 (258)
+.+...|+.|++++..||.++..-++.+-..|.+|+
T Consensus 54 E~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L~ 89 (90)
T 2wt7_B 54 ENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKLA 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456678889999999999999999999999998875
No 18
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=72.64 E-value=4.8 Score=28.10 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQC 39 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y 39 (258)
..-++.|+.++..+.+||..|..-|..+.+.|
T Consensus 21 k~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 21 KEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45578899999999999999999988887665
No 19
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=72.09 E-value=4.6 Score=26.30 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=22.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVK 33 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~ 33 (258)
-+++++.|-.|...+..|..||+++|.
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 367888888888999999999998875
No 20
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=72.04 E-value=4.6 Score=26.12 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=21.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVK 33 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~ 33 (258)
-+++++.|-.|=..+..|..||+++|.
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 367788888888888888888888874
No 21
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=71.40 E-value=3 Score=33.56 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVK 33 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~ 33 (258)
+-.++.|.+||.|++-||+.|+.-|.
T Consensus 7 ~~t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 7 DKTYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55688999999999999999987665
No 22
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=70.42 E-value=5.6 Score=35.95 Aligned_cols=44 Identities=16% Similarity=0.279 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 51 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 51 (258)
++.+..|+.++..+.+.|++|++.|.........|+.++..+.+
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45678899999999999999999999999999999999988854
No 23
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=70.19 E-value=3.6 Score=32.74 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025097 9 EKMKLLQAKLEHVRKQNENLRH 30 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~ 30 (258)
.++..|++||+|++.||.+|..
T Consensus 65 ~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3677899999999999998864
No 24
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=68.65 E-value=7.9 Score=25.02 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVK 33 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~ 33 (258)
+++++.|-.|=..+..|..||++||.
T Consensus 6 EdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 6 EXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 56777777777777788888888874
No 25
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=67.33 E-value=6 Score=29.14 Aligned_cols=34 Identities=15% Similarity=0.274 Sum_probs=26.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCN 40 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~ 40 (258)
+++.+..|+.+|+.-.+|.+.|+..|+.++.-..
T Consensus 23 Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 23 KEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6777889999999999999999998887765443
No 26
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=66.42 E-value=6.4 Score=34.76 Aligned_cols=39 Identities=13% Similarity=0.284 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 52 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 52 (258)
+++.|++|+.++++||..|+++..++- .|..-|..++..
T Consensus 123 ~ie~l~eEi~~LkeEn~eLkeLae~~q----~la~vi~~l~~~ 161 (209)
T 2wvr_A 123 EIEQKDNEIARLKKENKELAEVAEHVQ----YMAELIERLNGE 161 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhcC
Confidence 456777888888888888877666543 333444444443
No 27
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=66.20 E-value=13 Score=28.31 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 11 MKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 49 (258)
Q Consensus 11 ~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 49 (258)
...++.+...+.+||.+|+.-|..+......|+.-|..+
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 456777888888999999999988888888887766543
No 28
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=66.18 E-value=17 Score=29.69 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 49 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 49 (258)
+.++..|..||...+.++..++.-+..+.+.++.|+.++..+
T Consensus 88 ~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 88 DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666666667777777766655
No 29
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=63.70 E-value=12 Score=24.62 Aligned_cols=28 Identities=7% Similarity=0.155 Sum_probs=21.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKA 34 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~ 34 (258)
-+++++.|..|-..+..|..||+.+|..
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 3667777777878888888888888864
No 30
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=63.21 E-value=8.2 Score=28.41 Aligned_cols=27 Identities=19% Similarity=0.318 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVKAMN 36 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~~~~ 36 (258)
++..|+.+...+..||..|+..|..+.
T Consensus 37 ~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 37 QVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455566666666655554
No 31
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=62.79 E-value=11 Score=26.85 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQC 39 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y 39 (258)
.+.+..|+.++..+..||..|..-+..+.+.+
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999988777765543
No 32
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=62.76 E-value=12 Score=24.17 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVK 33 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~ 33 (258)
+++++.|-.|-..+..|..||+++|.
T Consensus 6 EdKVEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 6 EDKIEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 56777777777788888888888874
No 33
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=62.59 E-value=21 Score=30.57 Aligned_cols=45 Identities=16% Similarity=0.279 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhc
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKA-----------------MNNQCNDLLARIHEANRT 52 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~-----------------~~~~y~~Lq~~l~~~~~~ 52 (258)
-++++.+..||+.|+.--+=|.+||+. +.+.|..+|-.|+.+...
T Consensus 68 ~e~~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e 129 (186)
T 1oxz_A 68 MEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASD 129 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888999999999999999984 678888899999998864
No 34
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=61.98 E-value=8.6 Score=25.02 Aligned_cols=26 Identities=15% Similarity=0.351 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVK 33 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~ 33 (258)
+++++.|-.|=..+..|..||++||.
T Consensus 7 EdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 7 EDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 56777777777777778888888775
No 35
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=61.89 E-value=24 Score=28.78 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhc
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLVKA-----------------MNNQCNDLLARIHEANRT 52 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL~~-----------------~~~~y~~Lq~~l~~~~~~ 52 (258)
++++.+..||..|+.--+-|.+||+. +.+.|..+|-.|+.+...
T Consensus 44 e~~~k~~~eLe~v~~n~~LL~EML~~~~p~~~~~~~d~Ell~eL~~~ck~~qp~i~~li~e 104 (140)
T 1o3x_A 44 EKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASD 104 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888999999999999999984 567788888888888754
No 36
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=61.29 E-value=20 Score=29.99 Aligned_cols=45 Identities=16% Similarity=0.279 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhc
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKA-----------------MNNQCNDLLARIHEANRT 52 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~-----------------~~~~y~~Lq~~l~~~~~~ 52 (258)
-++++.+..||+.|+.--+=|.+||+. +.+.|..+|-.|+.+...
T Consensus 52 ~e~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i~~Li~e 113 (158)
T 1naf_A 52 MEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASD 113 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888999999999999999984 677888889999998864
No 37
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=61.07 E-value=19 Score=33.36 Aligned_cols=47 Identities=13% Similarity=0.131 Sum_probs=39.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTY 53 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~~ 53 (258)
+.+++..|+.-|.++.++-+.|+.+|..+..+...|+.+|.+++++-
T Consensus 10 ~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 10 ILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888999999999999999999999998888753
No 38
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=61.01 E-value=34 Score=25.68 Aligned_cols=40 Identities=15% Similarity=0.288 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 49 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 49 (258)
.++.|++||..--.|-++|++.|..-..++..|--.|..+
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiisl 58 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISG 58 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHh
Confidence 5678999999999999999999999999998887666544
No 39
>1wmi_B RELB, hypothetical protein PHS014; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: a.137.13.1
Probab=60.86 E-value=4.8 Score=29.48 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVK 33 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~ 33 (258)
++..+-.||.|++-|-+||..||-
T Consensus 5 kv~~vl~ELeRlkveiQRLE~ml~ 28 (67)
T 1wmi_B 5 KVGDVLKELERLKVEIQRLEAMLM 28 (67)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445577899999999999999985
No 40
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=59.89 E-value=17 Score=29.26 Aligned_cols=50 Identities=10% Similarity=0.052 Sum_probs=35.6
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025097 2 DSHNSPKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 51 (258)
Q Consensus 2 ~~~~~~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 51 (258)
|++|+-+..-+.-.+.|.++.+||+....-|....+.=..|..++.+++.
T Consensus 78 dsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~ 127 (132)
T 1ykh_B 78 DSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIE 127 (132)
T ss_dssp HHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788766556666777777777777777777777776777777766654
No 41
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=59.03 E-value=11 Score=26.81 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLVKA 34 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL~~ 34 (258)
.+-..|++++..+..|+..|+.+|..
T Consensus 37 ~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 37 KKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34467888888888888888888764
No 42
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=59.02 E-value=6 Score=34.93 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025097 13 LLQAKLEHVRKQNENLRHLVKAM 35 (258)
Q Consensus 13 ~L~~EL~rv~eEN~rL~~mL~~~ 35 (258)
.|.+|-+++++||.+|+..+..+
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~~~~~ 45 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQLESEV 45 (255)
T ss_dssp ---CTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555544433
No 43
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=58.09 E-value=17 Score=23.55 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVK 33 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~ 33 (258)
+++++.|-.+=..+..|..||+++|.
T Consensus 7 EdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 7 ADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 56666666666777778888888775
No 44
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=58.02 E-value=38 Score=25.38 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=41.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 52 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 52 (258)
.++-...|+..+..+.++-++|..-+..+.+.+..|+.+|.++++.
T Consensus 68 ~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~~ 113 (117)
T 2zqm_A 68 KDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRP 113 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4666788999999999999999999999999999999999999865
No 45
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=57.77 E-value=19 Score=29.87 Aligned_cols=51 Identities=12% Similarity=0.056 Sum_probs=38.2
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025097 2 DSHNSPKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 52 (258)
Q Consensus 2 ~~~~~~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 52 (258)
|++|+-+..-+.-.+.|.++.+||+....-|....+.=..|..++.+++..
T Consensus 78 dsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ 128 (151)
T 1yke_B 78 DSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIED 128 (151)
T ss_dssp HHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578887766666677778888888888887877777777777777777654
No 46
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G
Probab=56.39 E-value=2.8 Score=33.26 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHhc
Q 025097 12 KLLQAKLEHVRKQNENLRHLVK----------------AMNNQCNDLLARIHEANRT 52 (258)
Q Consensus 12 ~~L~~EL~rv~eEN~rL~~mL~----------------~~~~~y~~Lq~~l~~~~~~ 52 (258)
+.+..||++|+.--+-|.+||+ .+...|..+|-.|+.+...
T Consensus 4 ~k~~~eLe~V~~n~~LL~EML~~~~pg~~~~~d~ell~ELy~~ck~~qp~i~kL~~e 60 (111)
T 1wr6_A 4 TKRLHTLEEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELFDQCENKRRTLFKLASE 60 (111)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788889888888999987 4567788888889988864
No 47
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=56.19 E-value=38 Score=25.32 Aligned_cols=42 Identities=17% Similarity=0.285 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 49 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 49 (258)
++++..|++.|.+....-+.|......+...++.|+.|+.++
T Consensus 20 eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~ea 61 (89)
T 3bas_A 20 LKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQL 61 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 334444444444444555566666777777777777774443
No 48
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=55.60 E-value=20 Score=28.79 Aligned_cols=35 Identities=11% Similarity=0.254 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDL 42 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~L 42 (258)
-.|++.|++||......|+||+++-..-...|..-
T Consensus 3 ~~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFRea 37 (123)
T 4dzo_A 3 SKEVAELKKQVESAELKNQRLKEVFQTKIQEFRKA 37 (123)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999988776666543
No 49
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=55.53 E-value=3.8 Score=24.80 Aligned_cols=9 Identities=22% Similarity=0.988 Sum_probs=7.7
Q ss_pred ceeecccCC
Q 025097 120 AYFRCSMAS 128 (258)
Q Consensus 120 sYYRCs~~~ 128 (258)
.||+|++.|
T Consensus 16 cyykctnrp 24 (26)
T 1cz6_A 16 CYYKCTNRP 24 (26)
T ss_dssp CEEEECCCC
T ss_pred eEEEccCCC
Confidence 699999875
No 50
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=55.20 E-value=36 Score=25.93 Aligned_cols=38 Identities=21% Similarity=0.396 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 12 KLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 49 (258)
Q Consensus 12 ~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 49 (258)
..+.+||.+|++.|.-+..-|...-..+..|..+|..+
T Consensus 27 Q~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l 64 (81)
T 1wt6_A 27 QSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999988888877777777777665543
No 51
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=55.19 E-value=17 Score=27.17 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 47 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 47 (258)
....++.+...+..||..|+.-|..+......|+..|.
T Consensus 37 r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888999999999999988888777776543
No 52
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=55.04 E-value=29 Score=27.50 Aligned_cols=38 Identities=16% Similarity=0.194 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARI 46 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l 46 (258)
+.+..|+-|+++-..|..+|+.+.+.+...+..|+.+|
T Consensus 44 E~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 44 EQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555555555555544
No 53
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=54.70 E-value=16 Score=25.44 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLV 32 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL 32 (258)
+-..|..|+..+.+|+..|+.+|
T Consensus 37 ~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 37 LNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777777777777777665
No 54
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=54.27 E-value=40 Score=25.77 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 11 MKLLQAKLEHVRKQNENLRHLVKAMN 36 (258)
Q Consensus 11 ~~~L~~EL~rv~eEN~rL~~mL~~~~ 36 (258)
+++|++||..+..|-.+|-.-|..+-
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lE 31 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVE 31 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555544444444433
No 55
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=52.38 E-value=26 Score=24.27 Aligned_cols=29 Identities=17% Similarity=0.340 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLVKAMNN 37 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL~~~~~ 37 (258)
..+++|+.|+..++.++..|..-+..++.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777777777766665554
No 56
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=52.29 E-value=11 Score=24.86 Aligned_cols=20 Identities=15% Similarity=0.406 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025097 11 MKLLQAKLEHVRKQNENLRH 30 (258)
Q Consensus 11 ~~~L~~EL~rv~eEN~rL~~ 30 (258)
++.-.+|+.++++||..|.+
T Consensus 16 ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 16 IEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHh
Confidence 45567788888888888875
No 57
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=51.99 E-value=32 Score=32.26 Aligned_cols=11 Identities=45% Similarity=0.709 Sum_probs=6.9
Q ss_pred CCcccc--ccCcc
Q 025097 100 DGHQWR--KYGQK 110 (258)
Q Consensus 100 DGy~WR--KYGQK 110 (258)
|||.-= =|||.
T Consensus 138 ~G~N~tifAYGqT 150 (403)
T 4etp_A 138 DGYNVAIFAYGQT 150 (403)
T ss_dssp TTCCEEEEEESCT
T ss_pred CCcceEEEEECCC
Confidence 676543 67774
No 58
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=49.33 E-value=69 Score=22.83 Aligned_cols=36 Identities=14% Similarity=0.290 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLAR 45 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~ 45 (258)
.+=+|..|+..++.||++|+..|+.=-..-..|..-
T Consensus 11 tVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~ 46 (56)
T 2w6b_A 11 TVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKL 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999999999998887655444444443
No 59
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=49.02 E-value=38 Score=21.45 Aligned_cols=25 Identities=8% Similarity=0.235 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 13 LLQAKLEHVRKQNENLRHLVKAMNN 37 (258)
Q Consensus 13 ~L~~EL~rv~eEN~rL~~mL~~~~~ 37 (258)
.|++||+.++.-.++|.+.|+++.+
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888888887754
No 60
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=48.60 E-value=38 Score=31.94 Aligned_cols=11 Identities=45% Similarity=0.685 Sum_probs=6.1
Q ss_pred CCcccc--ccCcc
Q 025097 100 DGHQWR--KYGQK 110 (258)
Q Consensus 100 DGy~WR--KYGQK 110 (258)
|||.-= =|||.
T Consensus 136 ~G~n~tifAYGqT 148 (412)
T 3u06_A 136 DGYNICIFAYGQT 148 (412)
T ss_dssp TTCCEEEEEESST
T ss_pred CCCceEEEEecCC
Confidence 566532 66764
No 61
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=48.34 E-value=52 Score=27.63 Aligned_cols=43 Identities=12% Similarity=0.170 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHh
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHL-------VKAMNNQCNDLLARIHEANR 51 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~m-------L~~~~~~y~~Lq~~l~~~~~ 51 (258)
..+..|+.||..+..+.+.|.+- +..+.+-|.+||.|+..+-.
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~ 117 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQ 117 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888854 45667778888877765543
No 62
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=47.76 E-value=26 Score=32.86 Aligned_cols=10 Identities=20% Similarity=0.298 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 025097 40 NDLLARIHEA 49 (258)
Q Consensus 40 ~~Lq~~l~~~ 49 (258)
..|.+.+.++
T Consensus 48 r~l~n~~~el 57 (403)
T 4etp_A 48 RTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 3344444444
No 63
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=45.97 E-value=22 Score=24.70 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLVKAMN 36 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL~~~~ 36 (258)
+=+..+.+++.++..||..|++-|..+.
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788889999999999988877654
No 64
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=45.96 E-value=34 Score=32.30 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 12 KLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLA 44 (258)
Q Consensus 12 ~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~ 44 (258)
..|++||.++.++.+.|..-+..+.+....|..
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~ 38 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKE 38 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433333333333
No 65
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=45.65 E-value=79 Score=23.93 Aligned_cols=28 Identities=25% Similarity=0.495 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVKAMNN 37 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~~~~~ 37 (258)
.+..|+.|++.++++|..|..-...+..
T Consensus 21 tI~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 21 TITLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666888888888887665555333
No 66
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=44.86 E-value=46 Score=22.98 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 16 AKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 47 (258)
Q Consensus 16 ~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 47 (258)
.|.+.++.||..|+.-+..+.+....|+.+|.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777888888888777777777777766553
No 67
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=43.11 E-value=82 Score=24.91 Aligned_cols=43 Identities=19% Similarity=0.194 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEAN 50 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~ 50 (258)
++.++.+++.|-.++.|++....-+......+..|+.++..+-
T Consensus 36 KD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk 78 (103)
T 4h22_A 36 KDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVK 78 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777777888777778888888888888877653
No 68
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=42.56 E-value=37 Score=23.83 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025097 12 KLLQAKLEHVRKQNENLRHLVK 33 (258)
Q Consensus 12 ~~L~~EL~rv~eEN~rL~~mL~ 33 (258)
..|..|+..+.+|...|+.||.
T Consensus 40 ~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 40 SALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666654
No 69
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=42.50 E-value=27 Score=24.43 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRH 30 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~ 30 (258)
+++.|+.+|++++..+++|.+
T Consensus 15 k~eeler~lrk~kk~iKklEd 35 (50)
T 1a92_A 15 KLEELERDLRKLKKKIKKLEE 35 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhc
Confidence 568899999999999999976
No 70
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=41.85 E-value=49 Score=20.90 Aligned_cols=30 Identities=17% Similarity=0.419 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVKAMNNQC 39 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~~~~~~y 39 (258)
+++.|+.|......||-+|..-+.++...|
T Consensus 2 evaqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 2 EVAQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 578899999999999999988777665433
No 71
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=41.46 E-value=46 Score=25.14 Aligned_cols=29 Identities=17% Similarity=0.324 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLVKAMNN 37 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL~~~~~ 37 (258)
.++..|+++|..-+++++.+.++|++...
T Consensus 44 KTIDDLEDkL~~eKEK~k~i~eeLDqTL~ 72 (77)
T 3mtu_E 44 SEYNDLEEKVAHAKEENLNMHQMLDQTLL 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45567777777777777777777776543
No 72
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=41.22 E-value=36 Score=23.00 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLV 32 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL 32 (258)
....|++.+.-+..||.-|+.+|
T Consensus 18 ~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 18 KNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHh
Confidence 33445555555555555555443
No 73
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=41.19 E-value=65 Score=25.52 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025097 13 LLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 51 (258)
Q Consensus 13 ~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 51 (258)
.|+..+.++.+||+||+..-...+..-.+|+..|..+..
T Consensus 41 ~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ 79 (104)
T 3s9g_A 41 ELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRA 79 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHH
Confidence 588889999999999998766667777777776666543
No 74
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=40.97 E-value=23 Score=25.77 Aligned_cols=30 Identities=13% Similarity=0.272 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 18 LEHVRKQNENLRHLVKAMNNQCNDLLARIH 47 (258)
Q Consensus 18 L~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 47 (258)
+..+.+++++|..-++.+...-..|+.+|.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444454444444444455555443
No 75
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=40.90 E-value=47 Score=25.88 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDL 42 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~L 42 (258)
.+++..|++||..+.++-+.|-+++..+..+-..|
T Consensus 5 ~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~l 39 (106)
T 2aze_B 5 GGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLL 39 (106)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999998888766554433
No 76
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=40.79 E-value=26 Score=21.34 Aligned_cols=20 Identities=10% Similarity=0.370 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025097 9 EKMKLLQAKLEHVRKQNENL 28 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL 28 (258)
+++..|+-|.+-++.|.+.|
T Consensus 7 devgelkgevralkdevkdl 26 (27)
T 3v86_A 7 DEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHhcc
Confidence 44455555555555554443
No 77
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=39.73 E-value=1.1e+02 Score=23.18 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025097 18 LEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 51 (258)
Q Consensus 18 L~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 51 (258)
|..+.+|-++|..-=...-..|++++.+++++..
T Consensus 41 l~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~d 74 (96)
T 3q8t_A 41 LEKVQAEAERLDQEEAQYQREYSEFKRQQLELDD 74 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333445678998888887754
No 78
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=39.17 E-value=56 Score=31.12 Aligned_cols=46 Identities=11% Similarity=0.095 Sum_probs=33.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 52 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 52 (258)
|.+++..|++-+....++-+.|+.+|.....+...|+.++.+++.+
T Consensus 89 ml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~ 134 (409)
T 1m1j_C 89 IIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESH 134 (409)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3344445555555556678889999988888889999888888764
No 79
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=38.51 E-value=59 Score=23.73 Aligned_cols=40 Identities=8% Similarity=0.213 Sum_probs=25.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARI 46 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l 46 (258)
++..+..|+.++..+..+|..|..-...+-.....|+..+
T Consensus 27 K~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 27 KEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778888888888888776654444444445555443
No 80
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=37.82 E-value=90 Score=24.57 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHE 48 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~ 48 (258)
++++..|++.|.+....-+.|..-...+....+.|+.+|..
T Consensus 19 ~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~ 59 (129)
T 2fxo_A 19 KEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQA 59 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555556666666666666776666654
No 81
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=37.34 E-value=1.1e+02 Score=23.52 Aligned_cols=46 Identities=9% Similarity=0.151 Sum_probs=38.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 52 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 52 (258)
.++..+.|...+..+.+.-++|..-|..+.+.+..++..+.++++.
T Consensus 86 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 86 FEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3566678888888888888999999999999999999998888764
No 82
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=36.28 E-value=48 Score=25.97 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=24.6
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 3 SHNSPKEKMKLLQAKLEHVRKQNENLRHLVKAM 35 (258)
Q Consensus 3 ~~~~~eee~~~L~~EL~rv~eEN~rL~~mL~~~ 35 (258)
++|--.+++..|..|+..+..||.+|++-++.+
T Consensus 6 ~~~~~~e~~~~lr~ei~~Le~E~~rLr~~~~~L 38 (100)
T 1go4_E 6 SFLFSREEADTLRLKVEELEGERSRLEEEKRML 38 (100)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566788999999999999999998866543
No 83
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=36.02 E-value=52 Score=25.02 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 12 KLLQAKLEHVRKQNENLRHLVKAMN 36 (258)
Q Consensus 12 ~~L~~EL~rv~eEN~rL~~mL~~~~ 36 (258)
..|+.|+..+..|...|+.+|..+.
T Consensus 53 ~~Lr~~v~~L~~E~~~Lr~ll~~~p 77 (87)
T 1hjb_A 53 ERLQKKVEQLSRELSTLRNLFKQLP 77 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 3455555555555555555555443
No 84
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=35.79 E-value=70 Score=23.55 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=36.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEAN 50 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~ 50 (258)
.++-...|+..+..+.++-++|..-+..+......|+.+|.+++
T Consensus 63 ~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~~~ 106 (107)
T 1fxk_A 63 KDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEAM 106 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666788899999999999999999999999999988887653
No 85
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=34.96 E-value=91 Score=23.77 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 18 LEHVRKQNENLRHLVKAMNNQCNDLLARIH 47 (258)
Q Consensus 18 L~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 47 (258)
|..+-+||++|..-|..+.+--..|+..+.
T Consensus 41 L~eaL~EN~~Lh~~ie~l~eEi~~lk~en~ 70 (83)
T 1uii_A 41 LYEALKENEKLHKEIEQKDNEIARLKKENK 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666555555554444444433
No 86
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=34.84 E-value=18 Score=25.99 Aligned_cols=17 Identities=35% Similarity=0.470 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025097 21 VRKQNENLRHLVKAMNN 37 (258)
Q Consensus 21 v~eEN~rL~~mL~~~~~ 37 (258)
-.+||.||+-+|.+||-
T Consensus 34 ks~en~rlr~l~kqmcp 50 (63)
T 2c9l_Y 34 KSSENDRLRLLLKQMCP 50 (63)
T ss_dssp HHHHHHHHHHHHHHHCT
T ss_pred hcccchHHHHHHHHhCC
Confidence 36899999999999984
No 87
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=34.32 E-value=0.36 Score=38.55 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 11 MKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 47 (258)
Q Consensus 11 ~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 47 (258)
+..|+.|++++.+||.+|+.=++.+-..|.+|+.++.
T Consensus 67 ~~~L~~e~e~L~~En~~l~~E~~~lk~k~e~L~~~a~ 103 (107)
T 3a5t_A 67 KAELQQEVEKLASENASMKLELDALRSKYEALQNFAR 103 (107)
T ss_dssp HTTTSSTTTTTTSTTSHHHHTTTSSSSCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345678888889999999999999999999986543
No 88
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=34.14 E-value=1.3e+02 Score=24.33 Aligned_cols=39 Identities=18% Similarity=0.271 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 025097 11 MKLLQAKLEHVRKQNENLRHL-------VKAMNNQCNDLLARIHEA 49 (258)
Q Consensus 11 ~~~L~~EL~rv~eEN~rL~~m-------L~~~~~~y~~Lq~~l~~~ 49 (258)
.+.|+.+|....+|...|+.= ++.+......|+..+.++
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l 122 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKY 122 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444 444444444444444443
No 89
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=33.90 E-value=44 Score=23.03 Aligned_cols=26 Identities=8% Similarity=0.056 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVKAM 35 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~~~ 35 (258)
++..|+.||..-+++++.+.+.|++.
T Consensus 20 ~ID~LEdeL~~eKek~~~i~~eLD~t 45 (52)
T 2z5i_A 20 LVDDLEDELYAQKLKYKAISEELDHA 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34445555555555555555555543
No 90
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=33.54 E-value=34 Score=26.52 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVKAM 35 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~~~ 35 (258)
.+..|++|++.+++|.++|++-|..+
T Consensus 8 ~~~~l~~~~~~l~~~i~~lkeel~~L 33 (109)
T 2wg5_A 8 RMKQLEDKVEELLSKNYHLENEVARL 33 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777776666655443
No 91
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=33.42 E-value=20 Score=26.73 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025097 12 KLLQAKLEHVRKQNENLRHLVKA 34 (258)
Q Consensus 12 ~~L~~EL~rv~eEN~rL~~mL~~ 34 (258)
..|+.|+..+..|+..|+.+|.+
T Consensus 53 ~~L~~~v~~L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 53 ERLQKKVEQLSRELSTLRNLFKQ 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666655544
No 92
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=33.37 E-value=25 Score=26.59 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 17 KLEHVRKQNENLRHLVKAMNNQCNDLL 43 (258)
Q Consensus 17 EL~rv~eEN~rL~~mL~~~~~~y~~Lq 43 (258)
=|...-+||++|-.-|+...+-...|+
T Consensus 28 AL~eaL~EN~~Lh~~ie~~~eEi~~Lk 54 (79)
T 2zxx_A 28 ALYEALKENEKLHKEIEQKDSEIARLR 54 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667788888777665554444444
No 93
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=32.22 E-value=1.4e+02 Score=24.78 Aligned_cols=43 Identities=12% Similarity=0.245 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEAN 50 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~ 50 (258)
+..+..|+.+|..-++.++.+..+|+......+.++.-|..+-
T Consensus 104 Ek~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~ 146 (155)
T 2efr_A 104 EKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLE 146 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 3456778888888888888899998887777777776665553
No 94
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=32.17 E-value=39 Score=24.00 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLV 32 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL 32 (258)
.+++.|+.|-..+..|..+|+++|
T Consensus 37 ~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 37 DKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444
No 95
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=31.80 E-value=62 Score=20.20 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025097 15 QAKLEHVRKQNENLRHLVKAMN 36 (258)
Q Consensus 15 ~~EL~rv~eEN~rL~~mL~~~~ 36 (258)
-+=|.-+..||++|+.-++.+.
T Consensus 5 nallasleaenkqlkakveell 26 (31)
T 1p9i_A 5 NALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556678888887666554
No 96
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=30.84 E-value=23 Score=24.72 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025097 12 KLLQAKLEHVRKQNENLRHLV 32 (258)
Q Consensus 12 ~~L~~EL~rv~eEN~rL~~mL 32 (258)
..|..|+..+.+|+..|+.+|
T Consensus 39 ~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 39 SELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555544
No 97
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=30.69 E-value=26 Score=32.33 Aligned_cols=46 Identities=11% Similarity=0.127 Sum_probs=30.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 52 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 52 (258)
|-|++..|++.+-.+.++-+.|+.+|..+.++...|+.++..++.+
T Consensus 2 ~~~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~ 47 (319)
T 1fzc_C 2 MLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 47 (319)
T ss_dssp --------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466667777777777888888888888888888888888877764
No 98
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=29.61 E-value=1e+02 Score=26.16 Aligned_cols=34 Identities=18% Similarity=0.380 Sum_probs=23.9
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEH-------VRKQNENLRHLVKAMNNQCNDLL 43 (258)
Q Consensus 10 e~~~L~~EL~r-------v~eEN~rL~~mL~~~~~~y~~Lq 43 (258)
.+..|.+||.| +..||++|.+.|..+-.-+..|.
T Consensus 98 ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 98 RITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44555555555 45699999999998877665555
No 99
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=29.59 E-value=1.2e+02 Score=27.94 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 12 KLLQAKLEHVRKQNENLRHLVKAM 35 (258)
Q Consensus 12 ~~L~~EL~rv~eEN~rL~~mL~~~ 35 (258)
+..++|.+++.+||.||+..|+.+
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 438 DMYQHKETQLAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhhhhhhhhhhh
Confidence 445555566666666666666544
No 100
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=28.84 E-value=1.1e+02 Score=26.57 Aligned_cols=39 Identities=10% Similarity=0.226 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 47 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 47 (258)
++++.|+++|..+.++...|+.-+-++...|..++.+..
T Consensus 59 ~e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~ 97 (213)
T 4ani_A 59 EELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTR 97 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888877777766666666544
No 101
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=28.59 E-value=86 Score=23.37 Aligned_cols=36 Identities=14% Similarity=0.279 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 025097 13 LLQAKLEHVRKQNENLRHLVKAM---NNQCNDLLARIHE 48 (258)
Q Consensus 13 ~L~~EL~rv~eEN~rL~~mL~~~---~~~y~~Lq~~l~~ 48 (258)
.|...|.+-++|-.||.-+++.+ ..+|..|-..|.+
T Consensus 7 eL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~ 45 (74)
T 2q6q_A 7 ELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLED 45 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444544444443333 2455555554443
No 102
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=28.47 E-value=1.1e+02 Score=22.83 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 15 QAKLEHVRKQNENLRHLVKAMNNQCNDL 42 (258)
Q Consensus 15 ~~EL~rv~eEN~rL~~mL~~~~~~y~~L 42 (258)
..-|..++.|..+|+..++...-.-..|
T Consensus 26 q~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql 53 (83)
T 2xdj_A 26 QQQLSDNQSDIDSLRGQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3334444444444444444443333333
No 103
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=28.09 E-value=1.7e+02 Score=21.11 Aligned_cols=43 Identities=12% Similarity=0.300 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR 51 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~ 51 (258)
+.+=+|..|+..++.||++++.-|+.....-..|..-+-.+..
T Consensus 7 DtVYalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k 49 (61)
T 3l4f_A 7 DTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLK 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445788999999999999999998877777777665555543
No 104
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=28.00 E-value=74 Score=23.65 Aligned_cols=34 Identities=9% Similarity=0.066 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 16 AKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 49 (258)
Q Consensus 16 ~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 49 (258)
+||+.-.+..+.|..-|....+.-..||.+|..+
T Consensus 33 eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 33 EELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444455555555555556666666544
No 105
>2wy7_Q SBI, IGG-binding protein; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Staphylococcus aureus} PDB: 2wy8_Q 2jvg_A 2jvh_A
Probab=27.82 E-value=27 Score=25.96 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhc
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHL--VKAMNNQCNDLLARIHEANRT 52 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~m--L~~~~~~y~~Lq~~l~~~~~~ 52 (258)
+++..+++| -+-|||||... -.+..+--..||.||..++.+
T Consensus 30 peISkpqik---dsienrrlaqrevnkapmdvkehlqkqldalvaq 72 (80)
T 2wy7_Q 30 DAISKLNEK---DSIENRRLAQREVNKAPMDVKEHLQKQLDALVAQ 72 (80)
T ss_dssp HHHHHHHHC---CCHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred ccccccchh---hhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHh
Confidence 344444444 34589998642 222234557799999888754
No 106
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=27.61 E-value=37 Score=23.44 Aligned_cols=25 Identities=12% Similarity=0.305 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLV 32 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL 32 (258)
+.++..|+.|-..+..++..|+.++
T Consensus 28 E~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 28 ENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556667777777777776666543
No 107
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=27.48 E-value=1.6e+02 Score=24.72 Aligned_cols=39 Identities=5% Similarity=0.020 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH 47 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 47 (258)
.+.+.|++|-.+..+.-++-++.|..+...+.+||+-+.
T Consensus 5 qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafknLv~ 43 (155)
T 2aze_A 5 QECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQ 43 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999888888888888888888888888887443
No 108
>2p90_A Hypothetical protein CGL1923; structural genomics, PSI-2, MCSG structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} SCOP: c.56.8.1
Probab=27.39 E-value=69 Score=29.07 Aligned_cols=34 Identities=12% Similarity=0.303 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCND 41 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~ 41 (258)
+++++..+++++++.+++..+.+++..+-+.|.+
T Consensus 235 ~e~A~~~e~~i~~l~~~~~e~~~~V~~LE~~~D~ 268 (319)
T 2p90_A 235 ERDAEKVHRQLMEQTEESSEIQRVVGALEQQYDS 268 (319)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhh
Confidence 4677889999999999999999999999888876
No 109
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=27.13 E-value=73 Score=23.29 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025097 12 KLLQAKLEHVRKQNENLRHLVKA 34 (258)
Q Consensus 12 ~~L~~EL~rv~eEN~rL~~mL~~ 34 (258)
..|+.++.++.+||..|+..+..
T Consensus 53 ~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 53 RFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777777777777776543
No 110
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=25.52 E-value=1.5e+02 Score=29.56 Aligned_cols=45 Identities=11% Similarity=0.078 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhcCC
Q 025097 10 KMKLLQAKLEHVRKQNENLRHLVKAM-----------------NNQCNDLLARIHEANRTYS 54 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~mL~~~-----------------~~~y~~Lq~~l~~~~~~~~ 54 (258)
.+.+|+.=|+.+..|-+||+.-++.- .+.|..+|+||..+....-
T Consensus 132 nIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~a~dL 193 (562)
T 3ghg_A 132 HIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIAKDL 193 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHhhccc
Confidence 34667777777788888888777633 3789999999999987653
No 111
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=25.23 E-value=16 Score=26.77 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=19.4
Q ss_pred cCCccccccCccc--------cC--CCCCCcceeeccc
Q 025097 99 KDGHQWRKYGQKV--------TK--DNPSPRAYFRCSM 126 (258)
Q Consensus 99 ~DGy~WRKYGQK~--------ik--gn~~PRsYYRCs~ 126 (258)
.++++|-|-|... +. ...-||+||.|..
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~~ 54 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNG 54 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC-
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEecC
Confidence 6778999988642 22 3345999999954
No 112
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=25.14 E-value=88 Score=23.23 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=14.7
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 2 DSHNSPKEKMKLLQAKLEHVRKQNENLRHLVKAMN 36 (258)
Q Consensus 2 ~~~~~~eee~~~L~~EL~rv~eEN~rL~~mL~~~~ 36 (258)
++..+|.. +..|+..|.+-.+|-+...+.+..+-
T Consensus 13 ~~~~~mgt-i~eLq~~L~~K~eELr~kd~~I~eLE 46 (72)
T 3nmd_A 13 ASIEGRGS-LRDLQYALQEKIEELRQRDALIDELE 46 (72)
T ss_dssp ------CH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444433 45555555555555555555544443
No 113
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=24.94 E-value=1.2e+02 Score=18.38 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025097 12 KLLQAKLEHVRKQNENLRHLV 32 (258)
Q Consensus 12 ~~L~~EL~rv~eEN~rL~~mL 32 (258)
..|-.||+.++|.-++|+.-|
T Consensus 4 delykeledlqerlrklrkkl 24 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456667777777777776554
No 114
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=24.80 E-value=1.1e+02 Score=22.73 Aligned_cols=27 Identities=26% Similarity=0.629 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHH
Q 025097 16 AKLEHVRKQNENLRHLVKAMN----NQCNDL 42 (258)
Q Consensus 16 ~EL~rv~eEN~rL~~mL~~~~----~~y~~L 42 (258)
+-|.++-.||..|++.|.+-+ +.|..|
T Consensus 8 e~~q~ll~EN~~LreAlkqsNq~mkeR~eeL 38 (70)
T 3brv_B 8 ETLQRCLEENQELRDAIRQSNQILRERCEEL 38 (70)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 347788999999999988543 555555
No 115
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=24.80 E-value=95 Score=26.95 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 11 MKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEAN 50 (258)
Q Consensus 11 ~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~ 50 (258)
++.-...+..+..||..|..-|+.....-.+||.+|..+-
T Consensus 15 l~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~ 54 (190)
T 4emc_A 15 IDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLN 54 (190)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334445556666666666666666666666665553
No 116
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=24.75 E-value=73 Score=23.42 Aligned_cols=30 Identities=7% Similarity=0.283 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 18 LEHVRKQNENLRHLVKAMNNQCNDLLARIH 47 (258)
Q Consensus 18 L~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~ 47 (258)
+..+.+++++|..-.+.+-..-..|+.+|.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555555555555543
No 117
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=24.70 E-value=1.1e+02 Score=36.32 Aligned_cols=46 Identities=9% Similarity=0.180 Sum_probs=33.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 52 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 52 (258)
+.++++.+++||...+++-+.++.+|..+.++-..|+.++.+++.+
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~e 2057 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRE 2057 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777777777777777777777777666553
No 118
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=24.48 E-value=2.3e+02 Score=22.46 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=17.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRH 30 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~ 30 (258)
+|..++.|.-|+++++.|..+|..
T Consensus 13 rD~~Ie~Lkreie~lk~ele~l~~ 36 (120)
T 3i00_A 13 KDHLIERLYREISGLKAQLENMKT 36 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888888877777743
No 119
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=24.34 E-value=1.7e+02 Score=27.32 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 16 AKLEHVRKQNENLRHLVKAMNNQCNDLL 43 (258)
Q Consensus 16 ~EL~rv~eEN~rL~~mL~~~~~~y~~Lq 43 (258)
+|++.+++|..+|+..++...+....|+
T Consensus 537 ~~~~~~~~~~~~le~~~~~~~~~~~~l~ 564 (597)
T 3oja_B 537 KETEDLEQENIALEKQLDNKRAKQAELR 564 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHhhhHHHHHHHhhhhhHHHHHH
Confidence 4444444444444444444443333333
No 120
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=24.28 E-value=2.1e+02 Score=22.65 Aligned_cols=47 Identities=9% Similarity=0.232 Sum_probs=38.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 025097 7 PKEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTY 53 (258)
Q Consensus 7 ~eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~~ 53 (258)
.++..+.|...+..+.+.-++|..-|..+.+.+..++..+.++++..
T Consensus 96 ~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~ 142 (151)
T 2zdi_C 96 IDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQ 142 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566778888888888888888888888888888888888887643
No 121
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=24.06 E-value=1e+02 Score=23.79 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 17 KLEHVRKQNENLRHLVKAMNNQCNDLLARIHEAN 50 (258)
Q Consensus 17 EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~ 50 (258)
|+.++.+.-++|..++..+......|+..+.++.
T Consensus 2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~ 35 (133)
T 1fxk_C 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELE 35 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666666655555555555553
No 122
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.59 E-value=1.7e+02 Score=27.60 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 49 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 49 (258)
.++..|+.|++.+..|++.|+.-+..+.+.|..|+.++..+
T Consensus 49 ~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l 89 (428)
T 4b4t_K 49 FKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRI 89 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888899999888888888888888887655
No 123
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=23.29 E-value=1.1e+02 Score=25.03 Aligned_cols=30 Identities=10% Similarity=0.252 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 11 MKLLQAKLEHVRKQNENLRHLVKAMNNQCN 40 (258)
Q Consensus 11 ~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~ 40 (258)
+..++.|++++.++.+.|..++.+|.++-.
T Consensus 4 l~~i~~ei~e~~~~i~~l~~~Ik~il~~~~ 33 (129)
T 3f6n_A 4 LNQIQKEVSEILSDQKSMKADIKAILELLG 33 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 567889999999999999999988765543
No 124
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=23.17 E-value=1.4e+02 Score=25.88 Aligned_cols=34 Identities=26% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDL 42 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~L 42 (258)
+.+..|++++.++.+||.+|....+.+.+.+..+
T Consensus 132 ~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~ 165 (213)
T 1ik9_A 132 DTIAENQAKNEHLQKENERLLRDWNDVQGRFEKA 165 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 125
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=22.89 E-value=2.4e+02 Score=21.11 Aligned_cols=40 Identities=5% Similarity=0.160 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHE 48 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~ 48 (258)
+.++.+++++.....++.++..=+..+..+...|+..+..
T Consensus 23 d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~ 62 (101)
T 3u59_A 23 DRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEK 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666666666555543
No 126
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=22.74 E-value=94 Score=20.54 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNEN 27 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~r 27 (258)
++..|+.+|..+++|-.+
T Consensus 16 Qi~~l~~kl~~LkeEKHQ 33 (38)
T 2l5g_A 16 QILKLEEKLLALQEEKHQ 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 127
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=22.16 E-value=2.3e+02 Score=21.93 Aligned_cols=41 Identities=12% Similarity=0.200 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNE------------NLRHLVKAMNNQCNDLLARIHE 48 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~------------rL~~mL~~~~~~y~~Lq~~l~~ 48 (258)
-.+...|+.|+.+++.|+. ||+.-++.+.+.+..|...|..
T Consensus 22 a~~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~ 74 (93)
T 3sjb_C 22 SKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQS 74 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888874 6777777777777777766554
No 128
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=22.11 E-value=55 Score=22.66 Aligned_cols=23 Identities=9% Similarity=0.166 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHL 31 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~m 31 (258)
+.++.|..|..++++++++|.+-
T Consensus 34 ~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 34 KDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566777777777777766553
No 129
>2d7c_C RAB11 family-interacting protein 3; GTP-ASE, coiled-coil, protein transport; HET: GTP MES; 1.75A {Homo sapiens} SCOP: h.1.31.1
Probab=22.05 E-value=1.3e+02 Score=20.13 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025097 13 LLQAKLEHVRKQNENLRHLVKAM 35 (258)
Q Consensus 13 ~L~~EL~rv~eEN~rL~~mL~~~ 35 (258)
.|.+.|.+-.+.|++|+.-++.+
T Consensus 5 eL~~~l~~qee~n~~Le~YID~L 27 (42)
T 2d7c_C 5 ELMEAIQKQEEINFRLQDYIDRI 27 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777778899999888865
No 130
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=22.00 E-value=2.3e+02 Score=20.54 Aligned_cols=39 Identities=13% Similarity=0.208 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
Q 025097 9 EKMKLLQAKLEHVRKQNE------------NLRHLVKAMNNQCNDLLARIH 47 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~------------rL~~mL~~~~~~y~~Lq~~l~ 47 (258)
.+...|+.|+.+++.|++ ||+.-++.+.+.|..|...|.
T Consensus 6 ~~~~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~ 56 (65)
T 3sja_C 6 KKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQ 56 (65)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355678888888888774 667777777777777766554
No 131
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=21.59 E-value=83 Score=24.26 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 26 ENLRHLVKAMNNQCNDLLARIHEAN 50 (258)
Q Consensus 26 ~rL~~mL~~~~~~y~~Lq~~l~~~~ 50 (258)
++|+..+..+.+.+..|+..+..+.
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666667777777777776664
No 132
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=21.50 E-value=2.9e+02 Score=21.42 Aligned_cols=39 Identities=15% Similarity=0.307 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 025097 11 MKLLQAKLEHVRKQNENLRHLVK---AMNNQCNDLLARIHEA 49 (258)
Q Consensus 11 ~~~L~~EL~rv~eEN~rL~~mL~---~~~~~y~~Lq~~l~~~ 49 (258)
...|++|+.++..|-.+|..... .+..+-.-|.+.|...
T Consensus 49 ~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 49 QKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENF 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 35688888888888877766443 3334445555555443
No 133
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=21.31 E-value=20 Score=28.10 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025097 10 KMKLLQAKLEHVRKQNENLRHL 31 (258)
Q Consensus 10 e~~~L~~EL~rv~eEN~rL~~m 31 (258)
++..|-.||..++.||.+|+++
T Consensus 51 Qv~qLt~~lQ~~~~Ene~Lke~ 72 (95)
T 3n7n_E 51 QIAQLNKQLQLSFQENEKLLSV 72 (95)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999985
No 134
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=20.94 E-value=2.2e+02 Score=21.32 Aligned_cols=15 Identities=20% Similarity=0.160 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHh
Q 025097 37 NQCNDLLARIHEANR 51 (258)
Q Consensus 37 ~~y~~Lq~~l~~~~~ 51 (258)
..+.+|...|.++|.
T Consensus 95 ~q~~~L~~kf~e~m~ 109 (127)
T 1ez3_A 95 TQHSTLSRKFVEVMS 109 (127)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555566665554
No 135
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=20.66 E-value=2.6e+02 Score=20.63 Aligned_cols=42 Identities=17% Similarity=0.290 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 8 KEKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEA 49 (258)
Q Consensus 8 eee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~ 49 (258)
++++..+.+||..+++.-.+.......+-..+..|-....++
T Consensus 13 eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L 54 (89)
T 3bas_A 13 EEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDL 54 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555544445555555544444433
No 136
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=20.62 E-value=3e+02 Score=21.67 Aligned_cols=38 Identities=5% Similarity=0.227 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 9 EKMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARI 46 (258)
Q Consensus 9 ee~~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l 46 (258)
+..+.|++.+.++.++-++|..++..+...-...+..+
T Consensus 81 ~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~ 118 (142)
T 3gp4_A 81 ARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHL 118 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888888877777665554444443
No 137
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=20.17 E-value=1.8e+02 Score=25.52 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025097 12 KLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT 52 (258)
Q Consensus 12 ~~L~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~ 52 (258)
+.|..++..+.+|+.+|++|+..+.+.-..+|. |.+++.+
T Consensus 118 ~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~-la~vi~~ 157 (209)
T 2wvr_A 118 EKLHKEIEQKDNEIARLKKENKELAEVAEHVQY-MAELIER 157 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 345555555666666666666555555554442 3444433
No 138
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=20.07 E-value=80 Score=28.45 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025097 12 KLLQAKLEHVRKQNENLRHLVKAMN 36 (258)
Q Consensus 12 ~~L~~EL~rv~eEN~rL~~mL~~~~ 36 (258)
+.|+++|++.+.|..+|++=|+.+.
T Consensus 71 e~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 71 SKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456666666666666666665553
Done!