BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025098
(258 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain
pdb|2ZZG|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
Oligomerization Domain
pdb|2ZZG|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
Oligomerization Domain
Length = 752
Score = 73.9 bits (180), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 120/261 (45%), Gaps = 34/261 (13%)
Query: 8 TKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFK 67
T+ YY++ + +K++ K +IL++T F+P+GGGQP DTG +IV + K
Sbjct: 516 TRRLYYEDPFMKEFDAKVLRVIKD-----WVILDATAFYPEGGGQPYDTGVLIVNGREVK 570
Query: 68 FIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDV 127
V +V+ ++ H VE+ G E + GK +D RR + R H+ H+L
Sbjct: 571 --VTNVQKVGKVIIHK--VEDPGAFKEGMIVHGK-----IDWKRRIQHMRHHTGTHVLMG 621
Query: 128 CMQKVGLGHLEPGKGYHFPDGPYVE---YKGSVPQNELQSKTKELELEANALISRGGKVM 184
+ +V H+ D ++ YK + + EL KE+E+ AN ++ KV
Sbjct: 622 ALVRVLGRHVWQAGSQLTTDWARLDISHYK-RISEEEL----KEIEMLANRIVMEDRKVT 676
Query: 185 VAVLPYEEAS------MLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISM 238
LP A + GG +P G R+VK+ D CGGTH+ + +
Sbjct: 677 WEWLPRTTAEQKYGFRLYQGGVVP-----GREIRVVKIEDWDVQACGGTHLPSTGLVGPI 731
Query: 239 KVSQI-RTKKGTTKVFYSVGS 258
K+ + R + G ++ ++ G
Sbjct: 732 KILRTERIQDGVERIIFACGE 752
>pdb|2ZTG|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase Lacking The C-Terminal Dimerization Domain In
Complex With Ala-Sa
Length = 739
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 117/262 (44%), Gaps = 26/262 (9%)
Query: 1 MNTEVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFII 60
+ E T+ YYD+ L+ +++I +GD +IL + F+P+ GGQ +D G++I
Sbjct: 497 LQNEYPATEKLYYDDPTLLEFEAEVIG-VEGD----FVILNRSAFYPESGGQDNDVGYLI 551
Query: 61 VADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHS 120
KF V DV DG+V H VV+ + E G +V+ +D R + R HS
Sbjct: 552 ANGG--KFEVVDVLEADGVVLH--VVKGAKPEV------GTKVKGVIDSDVRWRHXRHHS 601
Query: 121 AGHLLDVCMQKVGLGHL-EPGKGYHFPDGPYVEYKGSVPQNELQSKTKEL---ELEANAL 176
A H+L +QKV H+ + G F P E + + L E+ AN
Sbjct: 602 ATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRRPSEEEIKEIEXLANREILANKP 661
Query: 177 ISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEII 236
I + + GG +P G R+V++GD+ CGGTH EI
Sbjct: 662 IKWEWXDRIEAERKFGFRLYQGG-----VPPGRKIRVVQVGDDVQA-CGGTHCRSTGEIG 715
Query: 237 SMKVSQIRT-KKGTTKVFYSVG 257
+K+ ++ + + G + ++ G
Sbjct: 716 XLKILKVESIQDGVIRFEFAAG 737
>pdb|2E1B|A Chain A, Crystal Structure Of The Alax-M Trans-Editing Enzyme From
Pyrococcus Horikoshii
Length = 216
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 98/222 (44%), Gaps = 46/222 (20%)
Query: 27 SYFKGDDGR------RALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDV-RSKDGI 79
+Y K GR A++L+ TIF+P GGGQP D G I + V DV + ++G
Sbjct: 13 AYLKEAKGRVLEIRDNAILLDQTIFYPTGGGQPHDRGTINGVE------VLDVYKDEEGN 66
Query: 80 VFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQKV-GLGHLE 138
V+H V +F++ G EV L +D R R+H+ HLL+ + +V G G+ +
Sbjct: 67 VWH---VVKEPEKFKV----GDEVELKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQ 119
Query: 139 -PGKGYHFPDGPYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLC 197
G G G Y + P+N + K + + L N + GG+V
Sbjct: 120 LVGSGMSVEKG---RYDIAYPENLNKYKEQIISL-FNKYVDEGGEVK------------- 162
Query: 198 GGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMK 239
I R ++ D PCGGTHV DI EI +K
Sbjct: 163 -------IWWEGDRRYTQIRDFEVIPCGGTHVKDIKEIGHIK 197
>pdb|2ZZE|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain In Lysine-Methylated Form
pdb|2ZZE|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain In Lysine-Methylated Form
Length = 752
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 98/228 (42%), Gaps = 23/228 (10%)
Query: 38 LILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMEL 97
+IL++T F+P+GGGQP DTG +IV + V +V+ ++ H VE+ G E +
Sbjct: 541 VILDATAFYPEGGGQPYDTGVLIVNGREVX--VTNVQXVGXVIIH--XVEDPGAFXEGMI 596
Query: 98 EKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQKVGLGHLEPGKGYHFPDGPYVEYKGSV 157
G +D RR + R H+ H+L + +V H+ D ++
Sbjct: 597 VHGX-----IDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYX 651
Query: 158 PQNELQSKTKELELEANALISRGGKVMVAVLPYEEAS------MLCGGCLPHYIPQGSTP 211
+ + + E+E+ AN ++ V LP A + GG +P G
Sbjct: 652 RIS--EEELXEIEMLANRIVMEDRXVTWEWLPRTTAEQXYGFRLYQGGVVP-----GREI 704
Query: 212 RIVKLGDNPGCPCGGTHVSDISEIISMKVSQI-RTKKGTTKVFYSVGS 258
R+V + D GGTH+ + + + + R + G ++ ++ G
Sbjct: 705 RVVXIEDWDVQAXGGTHLPSTGLVGPIXILRTERIQDGVERIIFACGE 752
>pdb|1V4P|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase From
Pyrococcus Horikoshii Ot3
pdb|1V4P|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase From
Pyrococcus Horikoshii Ot3
pdb|1V4P|C Chain C, Crystal Structure Of Alanyl-Trna Synthetase From
Pyrococcus Horikoshii Ot3
pdb|1WXO|A Chain A, Structure Of Archaeal Trans-Editing Protein Alax In
Complex With Zinc
pdb|1WXO|B Chain B, Structure Of Archaeal Trans-Editing Protein Alax In
Complex With Zinc
pdb|1WXO|C Chain C, Structure Of Archaeal Trans-Editing Protein Alax In
Complex With Zinc
Length = 157
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 167 KELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVK---LGDNPGCP 223
+E+E AN + + + LP EEA + G + P RI+K + D
Sbjct: 56 REIERLANEKVKENAPIKIYELPREEAEKMFGEDMYDLFPVPEDVRILKVVVIEDWNVNA 115
Query: 224 CGGTHVSDISEIISMKVSQIRTKKG 248
C H EI +K+ ++R +K
Sbjct: 116 CNKEHTKTTGEIGPIKIRKVRFRKS 140
>pdb|3KEW|A Chain A, Crystal Structure Of Probable Alanyl-Trna-Synthase From
Clostridium Perfringens
pdb|3KEW|B Chain B, Crystal Structure Of Probable Alanyl-Trna-Synthase From
Clostridium Perfringens
Length = 241
Score = 33.9 bits (76), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 103/253 (40%), Gaps = 34/253 (13%)
Query: 15 NMLKLQSTSKLISYFKGD-------DGRRALILESTIFHPQGGGQPSDTGFIIVADSDFK 67
++ KL + I FKG+ DG+ ++L+ T F P GGGQ D G I D
Sbjct: 2 SLTKLYYEDQYIKEFKGEIIEVKEIDGKFHVLLDQTAFFPGGGGQMGDLGLI---DG--- 55
Query: 68 FIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDV 127
V DV ++G V+H E E +K K ++ +D RR + H HLL
Sbjct: 56 IKVLDVYEEEGKVYHV---------LEKEPKKLKNLQCELDWERRFDGMQQHLGQHLLSG 106
Query: 128 CMQKVGLGHLEPGKGYHF-PDGPYVEYKGSVPQNELQSKTKELELEANALISRGGKVM-V 185
C + + G+H + V+ G + + + +E E EAN LI +V
Sbjct: 107 CFYDLFGAN---TCGFHLGKEISTVDIVGFLDEKTI----REAEKEANRLIFENLEVKSY 159
Query: 186 AVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRT 245
A E + LP + IV L N C G H + ++ +K+ +
Sbjct: 160 APSKKELKKVKTRRALPKTDEEIRIVEIVGLDLN---ACCGVHPRNTRDLQVIKIRRWEK 216
Query: 246 KKGTTKVFYSVGS 258
K T++ Y G+
Sbjct: 217 HKNATRIEYVAGN 229
>pdb|1V7O|A Chain A, Alanyl-Trna Synthetase Editing Domain Homologue Protein
From Pyrococcus Horikoshii
pdb|1V7O|B Chain B, Alanyl-Trna Synthetase Editing Domain Homologue Protein
From Pyrococcus Horikoshii
pdb|1WNU|A Chain A, Structure Of Archaeal Trans-Editing Protein Alax In
Complex With L- Serine
pdb|1WNU|B Chain B, Structure Of Archaeal Trans-Editing Protein Alax In
Complex With L- Serine
Length = 165
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 167 KELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVK---LGDNPGCP 223
+E+E AN + + + LP EEA G P RI+K + D
Sbjct: 56 REIERLANEKVKENAPIKIYELPREEAEKXFGEDXYDLFPVPEDVRILKVVVIEDWNVNA 115
Query: 224 CGGTHVSDISEIISMKVSQIRTKKG 248
C H EI +K+ ++R +K
Sbjct: 116 CNKEHTKTTGEIGPIKIRKVRFRKS 140
>pdb|3MAL|A Chain A, Crystal Structure Of The Sdf2-Like Protein From
Arabidopsis
pdb|3MAL|B Chain B, Crystal Structure Of The Sdf2-Like Protein From
Arabidopsis
Length = 199
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 13/73 (17%)
Query: 49 GGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVD 108
G GQ S TGF V DS+ +IV V G E G ++ G +RL
Sbjct: 45 GSGQQSVTGFPGVVDSNSYWIVKPVP---------GTTEKQGD----AVKSGATIRLQHM 91
Query: 109 ESRRKLNSRLHSA 121
++R+ L+S LH++
Sbjct: 92 KTRKWLHSHLHAS 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,550,293
Number of Sequences: 62578
Number of extensions: 379273
Number of successful extensions: 874
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 862
Number of HSP's gapped (non-prelim): 10
length of query: 258
length of database: 14,973,337
effective HSP length: 97
effective length of query: 161
effective length of database: 8,903,271
effective search space: 1433426631
effective search space used: 1433426631
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)