BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025098
(258 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8PWU0|SYA_METMA Alanine--tRNA ligase OS=Methanosarcina mazei (strain ATCC BAA-159 /
DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=alaS PE=3
SV=1
Length = 926
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 132/256 (51%), Gaps = 22/256 (8%)
Query: 8 TKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFK 67
TK +YD +L+ + ++ F ++L++T F+ +GGGQP+D G I+ D+ ++
Sbjct: 511 TKRRFYDEPTRLEFEAVVLDVFDNH-----VVLDNTFFYAEGGGQPADIGTIVAEDTVYR 565
Query: 68 FIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDV 127
+ DV+ +G++ H +EN G E+ + KG+ + VDE RR +R H+A H+++
Sbjct: 566 VV--DVQVYEGVILH--TIENPGK--ELAITKGELITGKVDEKRRMTLARHHTATHIVND 619
Query: 128 CMQKVGLGHLEPGKGYHFPDGPYVE---YKGSVPQNELQSKTKELELEANALISRGGKVM 184
+KV H+ F D ++ YK P+ + +++EL AN + +V+
Sbjct: 620 AARKVLGKHIWQAGAQKFEDHSRLDLSHYKHISPE-----EIRQIELLANRTVMENKRVV 674
Query: 185 VAVLPYEEASMLCG-GCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI 243
+P EA + G G +P G RIVK+GD+ CGGTH + I +K+ +
Sbjct: 675 TEWMPRTEAEQVYGFGLYQGGVPPGEKIRIVKVGDDVEA-CGGTHCTSTGIIGPIKILKT 733
Query: 244 -RTKKGTTKVFYSVGS 258
R + G ++ ++ G+
Sbjct: 734 ERIQDGVERIEFAAGT 749
>sp|Q8TU79|SYA_METAC Alanine--tRNA ligase OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=alaS PE=3 SV=1
Length = 925
Score = 97.4 bits (241), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 128/255 (50%), Gaps = 22/255 (8%)
Query: 8 TKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFK 67
TK +YD +L+ + ++ F ++L++T F+ +GGGQP+D G I V D +K
Sbjct: 511 TKRRFYDEPTRLEFEAVVLDVFDNH-----IVLDNTFFYAEGGGQPADIGTISVGDIVYK 565
Query: 68 FIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDV 127
+ DV+ +G++ H V+ G E+E+ KG + VDE RR +R H+A H+++
Sbjct: 566 VV--DVQVYEGVIVH--TVDIPDG--ELEITKGDIITGKVDERRRMTLARHHTATHIVND 619
Query: 128 CMQKVGLGHLEPGKGYHFPDGPYVE---YKGSVPQNELQSKTKELELEANALISRGGKVM 184
+KV H+ F D ++ YK P+ + K++EL AN + +V+
Sbjct: 620 AARKVLGKHIWQAGAQKFEDHSRLDLSHYKHISPE-----ELKQIELLANRTVMENKRVI 674
Query: 185 VAVLPYEEASMLCG-GCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI 243
+P EA + G G +P G RIVK+GD+ CGGTH I +K+ +
Sbjct: 675 TEWMPRIEAEQVYGFGLYQGGVPPGEKIRIVKVGDDVEA-CGGTHCLSTGVIGPIKILKT 733
Query: 244 -RTKKGTTKVFYSVG 257
R + G +V ++ G
Sbjct: 734 ERIQDGVERVEFAAG 748
>sp|Q46CS0|SYA_METBF Alanine--tRNA ligase OS=Methanosarcina barkeri (strain Fusaro / DSM
804) GN=alaS PE=3 SV=1
Length = 923
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 128/255 (50%), Gaps = 22/255 (8%)
Query: 8 TKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFK 67
TK +YD +L+ + ++ F + ++L++T F+ +GGGQP+D G I A + +K
Sbjct: 511 TKRSFYDEPTRLEFEAVVLDIFDNN-----IVLDNTFFYAEGGGQPADMGTIATAYAVYK 565
Query: 68 FIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDV 127
+ DV+ DG++ H +EN G +++ KG V VDE RR +R H+A H+++
Sbjct: 566 VV--DVQVYDGVIVH--TIENPDG--NLDIRKGDIVNGKVDEKRRMTLARHHTATHIVND 619
Query: 128 CMQKVGLGHLEPGKGYHFPDGPYVE---YKGSVPQNELQSKTKELELEANALISRGGKVM 184
+KV H+ F D ++ YK P +EL K++EL AN ++ +V+
Sbjct: 620 AARKVLGTHIWQAGAQKFEDHSRLDLSHYKHISP-DEL----KQIELLANRMVMENKRVV 674
Query: 185 VAVLPYEEASMLCG-GCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI 243
+ EA G G +P G R+VK+GD+ C GTH + +K+ +
Sbjct: 675 TEWMSRTEAEQEYGFGLYQGGVPPGEKIRVVKVGDDVEA-CAGTHCVSTGVVGPIKILRT 733
Query: 244 -RTKKGTTKVFYSVG 257
R + G +V ++ G
Sbjct: 734 ERIQDGVERVEFAAG 748
>sp|O57734|ALAXL_PYRHO Alanyl-tRNA editing protein AlaX-L OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=alaXL PE=3 SV=1
Length = 404
Score = 94.7 bits (234), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 122/250 (48%), Gaps = 23/250 (9%)
Query: 12 YYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVH 71
YY + + +K++ K D R ++L+ TIF+P+GGGQP D G ++ +DF+ +V
Sbjct: 6 YYKDPYLREIDAKIVDVRKEKD-RVEVVLDRTIFYPEGGGQPGDRG--VIKGNDFEIMVE 62
Query: 72 DVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQK 131
D K+G +FH G + GE E G++V+L++D R N ++H+ H+L ++K
Sbjct: 63 DTIEKNGEIFHIGKLR---GEIPKE---GEKVKLYLDWEWRYGNMQMHTGQHILSAVLKK 116
Query: 132 VGLGHLEPGKGYHFPDGPYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVA---VL 188
L L+ F D +E G V + ++ ELE N +I V++ L
Sbjct: 117 --LYDLDTTGFNIFRDYAKIEVNGEVNWDMIERA----ELEVNKIIINDLPVVIEEYDKL 170
Query: 189 PYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRTK-K 247
P E A L RIVK+GD PCGGTHV E+ +KV + K K
Sbjct: 171 PEEIALKLRKNV----TKVKEKIRIVKIGDVDVTPCGGTHVKSTREVGIIKVLRFYKKSK 226
Query: 248 GTTKVFYSVG 257
++ ++ G
Sbjct: 227 NLWRIEFTCG 236
>sp|A0B6X3|SYA_METTP Alanine--tRNA ligase OS=Methanosaeta thermophila (strain DSM 6194 /
PT) GN=alaS PE=3 SV=1
Length = 913
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 114/225 (50%), Gaps = 19/225 (8%)
Query: 37 ALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEME 96
+++L+ T+F+P+GGGQP+D G ++V D F V+DV+ DG+V H VE G
Sbjct: 528 SVVLDRTLFYPEGGGQPADRG-VLVRDGQV-FNVNDVQMIDGVVLHR--VEQEG------ 577
Query: 97 LEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQKVGLGHLEPGKGYHFPDGPYVE--YK 154
L G V +D RR ++R H+A H+++ ++V H+ D ++ +
Sbjct: 578 LSPGDRVTGRIDMRRRMAHARHHTATHIVNDSAKRVLGRHVWQAGAQKSEDRARLDISHY 637
Query: 155 GSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPH-YIPQGSTPRI 213
+ EL K +ELEAN + V+ +P EEA L G L +P G R+
Sbjct: 638 RRISDEEL----KAIELEANRRVMEMIPVITEFMPREEAERLFGFQLYQGGVPPGREIRV 693
Query: 214 VKLGDNPGCPCGGTHVSDISEIISMKVSQI-RTKKGTTKVFYSVG 257
V++G + C GTHV++ I +K+ + R + G ++ ++ G
Sbjct: 694 VRVGSDIEA-CAGTHVTNTGMIGPIKILRTERVQDGVERIEFAAG 737
>sp|Q2LPL7|SYA_SYNAS Alanine--tRNA ligase OS=Syntrophus aciditrophicus (strain SB)
GN=alaS PE=3 SV=1
Length = 878
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 104/225 (46%), Gaps = 18/225 (8%)
Query: 19 LQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSK-D 77
LQ + S +G++G LI+ T F+ + GGQ DTG I DF F V D R D
Sbjct: 480 LQKEELVDSLAEGEEGE--LIVAETPFYGEIGGQIGDTGTI--EGEDFVFEVLDTRRPLD 535
Query: 78 GIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQKVGLGHL 137
++ H G V G KG V L V E +R+ HSA HLL M+ V H+
Sbjct: 536 NLISHVGRVIKGRGR------KGDSVNLIVAEDKRRATEANHSATHLLQAAMKTVMGNHI 589
Query: 138 EPGKGYHFPDGPYVEYK--GSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASM 195
+ + ++ + +NEL+ ++E ANA+I R V+ VLP EEA M
Sbjct: 590 KQSGSLVTAERLRFDFTHFSKIEENELE----QIENLANAVIRRNLPVVTRVLPLEEA-M 644
Query: 196 LCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKV 240
G G R+V++GD CGGTH+ +I +K+
Sbjct: 645 KTGATAVFDEKYGEKVRVVRMGDFSMELCGGTHIQRTGDIGFIKI 689
>sp|Q971J4|SYA_SULTO Alanine--tRNA ligase OS=Sulfolobus tokodaii (strain DSM 16993 / JCM
10545 / NBRC 100140 / 7) GN=alaS PE=3 SV=1
Length = 904
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 127/258 (49%), Gaps = 27/258 (10%)
Query: 7 PTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDF 66
PTK YY++ K T+K++S +K L+L+ T F+P+GGGQ DTG II +
Sbjct: 504 PTKKLYYEDQYKRSFTAKVVSVYKN-----YLVLDQTTFYPEGGGQIGDTG-IIKDEKGN 557
Query: 67 KFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLD 126
+ V D + ++FH E S L++G EV +D RR + H+ H++
Sbjct: 558 TYQVVDTQKVKDVIFHILDKEPS-------LKEGDEVYGEIDWQRRYRIMKHHTVTHVIL 610
Query: 127 VCMQKVGLGHLEPGKGYHFPDGPYVE---YKGSVPQNELQSKTKELELEANALISRGGKV 183
+KV H+ P ++ YK +P E + K++E AN +I+ V
Sbjct: 611 SAARKVLGEHVWQAGAEKTPQKGRLDITHYK--LPTEE---EIKKIEDLANYIINDRRSV 665
Query: 184 MVAVLPYEEASMLCGGCLPHY---IPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKV 240
++ EA M G + Y +P+G+ R++++ D CGGTH+S+ SEI ++K+
Sbjct: 666 RPLIINRTEAEMKYGVSI--YAGGVPEGADVRLIEIKDWDIEGCGGTHLSNTSEIGALKI 723
Query: 241 SQI-RTKKGTTKVFYSVG 257
+ + + G ++ Y G
Sbjct: 724 INVEKIQDGVIRLEYVAG 741
>sp|Q9HN24|SYA_HALSA Alanine--tRNA ligase OS=Halobacterium salinarum (strain ATCC 700922
/ JCM 11081 / NRC-1) GN=alaS PE=3 SV=1
Length = 929
Score = 81.6 bits (200), Expect = 5e-15, Method: Composition-based stats.
Identities = 73/257 (28%), Positives = 123/257 (47%), Gaps = 20/257 (7%)
Query: 8 TKLDYYDNMLKLQSTSKLISYFK--GDDGRRA--LILESTIFHPQGGGQPSDTGFIIVAD 63
T+ YYD+ + + ++ F+ G+DG A ++L+ T+F+P+GGGQP+DTG ++
Sbjct: 515 TETLYYDDAYGSEFEAVVLDVFEREGEDGDGAFDVVLDQTMFYPEGGGQPADTG--VLTG 572
Query: 64 SDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGH 123
D V DV+ +DG+V H +N G KG+ VR +D RR+ H+A H
Sbjct: 573 DDHTVDVIDVQERDGVVLHR-TTDNPG--------KGEFVRGQIDTERRRRLMAHHTATH 623
Query: 124 LLDVCMQKVGLGHLEPGKGYHFPDGPYVEYKGSVPQNELQSKTKELELEANALISRGGKV 183
++ ++V H+ D ++ + + KE+E AN ++ V
Sbjct: 624 IVVYAARQVLGEHVRQAGAQKGVDSSRIDVTHY--ERVDRETVKEIERVANEIVRANTSV 681
Query: 184 MVAVLPYEEASMLCGGCLPH-YIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKV-S 241
EA G L IP G R+V + D+ CGGTHV+ EI S+K+ +
Sbjct: 682 QCEWPDRHEAEAEYGFDLYQGGIPAGEQIRLVHVDDDVQA-CGGTHVARTGEIGSIKILN 740
Query: 242 QIRTKKGTTKVFYSVGS 258
R + G ++ ++ G+
Sbjct: 741 AERVQDGVERLTFAAGA 757
>sp|B0R7I0|SYA_HALS3 Alanine--tRNA ligase OS=Halobacterium salinarum (strain ATCC 29341
/ DSM 671 / R1) GN=alaS PE=3 SV=1
Length = 929
Score = 81.6 bits (200), Expect = 5e-15, Method: Composition-based stats.
Identities = 73/257 (28%), Positives = 123/257 (47%), Gaps = 20/257 (7%)
Query: 8 TKLDYYDNMLKLQSTSKLISYFK--GDDGRRA--LILESTIFHPQGGGQPSDTGFIIVAD 63
T+ YYD+ + + ++ F+ G+DG A ++L+ T+F+P+GGGQP+DTG ++
Sbjct: 515 TETLYYDDAYGSEFEAVVLDVFEREGEDGDGAFDVVLDQTMFYPEGGGQPADTG--VLTG 572
Query: 64 SDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGH 123
D V DV+ +DG+V H +N G KG+ VR +D RR+ H+A H
Sbjct: 573 DDHTVDVIDVQERDGVVLHR-TTDNPG--------KGEFVRGQIDTERRRRLMAHHTATH 623
Query: 124 LLDVCMQKVGLGHLEPGKGYHFPDGPYVEYKGSVPQNELQSKTKELELEANALISRGGKV 183
++ ++V H+ D ++ + + KE+E AN ++ V
Sbjct: 624 IVVYAARQVLGEHVRQAGAQKGVDSSRIDVTHY--ERVDRETVKEIERVANEIVRANTSV 681
Query: 184 MVAVLPYEEASMLCGGCLPH-YIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKV-S 241
EA G L IP G R+V + D+ CGGTHV+ EI S+K+ +
Sbjct: 682 QCEWPDRHEAEAEYGFDLYQGGIPAGEQIRLVHVDDDVQA-CGGTHVARTGEIGSIKILN 740
Query: 242 QIRTKKGTTKVFYSVGS 258
R + G ++ ++ G+
Sbjct: 741 AERVQDGVERLTFAAGA 757
>sp|A3CVP2|SYA_METMJ Alanine--tRNA ligase OS=Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1) GN=alaS PE=3 SV=1
Length = 915
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 121/256 (47%), Gaps = 26/256 (10%)
Query: 7 PTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDF 66
PTK YY+ +++ + ++ YF G +L+ T+F+P+GGGQPSDTG ++ ++S
Sbjct: 512 PTKKLYYELPNEVEFEAMVLDYFDG-----MAVLDQTLFYPEGGGQPSDTGTLVTSESMV 566
Query: 67 KFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLD 126
+ V +V ++ H +GG L +G V+ VDE RR R H+A H+L
Sbjct: 567 R--VEEVVKLGEVILH----RVTGG----PLMRGDRVKGMVDEERRWSLMRHHTATHVLL 616
Query: 127 VCMQKVGLGHLEPG---KGYHFPDGPYVEYKGSVPQNELQSKTKELELEANALISRGGKV 183
Q+V H+ KG Y+ P +EL + +ELEAN L+ V
Sbjct: 617 HAAQQVLGVHVHQAGAQKGSEVSRLDIRHYRHITP-DEL----RRIELEANRLVMADTPV 671
Query: 184 MVAVLPYEEASMLCG-GCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQ 242
+ V +A G G +P G R V++G + C GTHV EI ++V
Sbjct: 672 YIHVEERTKAEQKYGFGLYQGGVPPGREIRTVQVGADVQA-CAGTHVRTTGEIGPIRVLG 730
Query: 243 IR-TKKGTTKVFYSVG 257
+ + G ++ ++ G
Sbjct: 731 VEHIQDGVERLVFAAG 746
>sp|C3MR87|SYA_SULIL Alanine--tRNA ligase OS=Sulfolobus islandicus (strain L.S.2.15 /
Lassen #1) GN=alaS PE=3 SV=1
Length = 900
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 122/261 (46%), Gaps = 23/261 (8%)
Query: 3 TEVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVA 62
T + PT+ YY + K++ +K LIL+ T F+P+GGGQ DTG II
Sbjct: 499 TALQPTEKLYYKDQYMRSFEGKVLGVYKN-----YLILDKTTFYPEGGGQLGDTGLIIDE 553
Query: 63 DSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAG 122
S ++ V D + + ++ H E S ++ G VR ++ RR R H+
Sbjct: 554 KSSKRYEVIDTQKVNDVIVHILKEEPST------IKVGDNVRGEINWERRYRLMRHHTVT 607
Query: 123 HLLDVCMQKVGLGHLEPGKGYHFPDGPYVEYKGSVPQNELQSKTKE----LELEANALIS 178
H++ +KV H+ P+ KG + ++ T+E +E AN++IS
Sbjct: 608 HVILAAAKKVLGEHVWQAGAEKTPE------KGRLDITHHKTLTEEEVKLIENYANSVIS 661
Query: 179 RGGKVMVAVLPYEEASMLCGGCLPH-YIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIIS 237
+V + EA M G + +P +T R++++ D CGGTHVS+ SEI +
Sbjct: 662 DRRQVKPLEMNRMEAEMKYGVSIYEGGVPNSATIRLLEIKDWDIESCGGTHVSNTSEIGA 721
Query: 238 MKVSQI-RTKKGTTKVFYSVG 257
+K+ + R + G ++ Y G
Sbjct: 722 VKIINVERIQDGVIRLEYVAG 742
>sp|C3NG91|SYA_SULIN Alanine--tRNA ligase OS=Sulfolobus islandicus (strain Y.N.15.51 /
Yellowstone #2) GN=alaS PE=3 SV=1
Length = 900
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 122/261 (46%), Gaps = 23/261 (8%)
Query: 3 TEVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVA 62
T + PT+ YY + K++ +K LIL+ T F+P+GGGQ DTG II
Sbjct: 499 TALQPTEKLYYKDQYMRSFEGKVLGVYKN-----YLILDKTTFYPEGGGQLGDTGLIIDE 553
Query: 63 DSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAG 122
S ++ V D + + ++ H E S ++ G VR ++ RR R H+
Sbjct: 554 KSSKRYEVIDTQKVNDVIVHILKEEPST------IKVGDNVRGEINWERRYRLMRHHTVT 607
Query: 123 HLLDVCMQKVGLGHLEPGKGYHFPDGPYVEYKGSVPQNELQSKTKE----LELEANALIS 178
H++ +KV H+ P+ KG + ++ T+E +E AN++IS
Sbjct: 608 HVILAAAKKVLGEHVWQAGAEKTPE------KGRLDITHHKTLTEEEVKLIENYANSVIS 661
Query: 179 RGGKVMVAVLPYEEASMLCGGCLPH-YIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIIS 237
+V + EA M G + +P +T R++++ D CGGTHVS+ SEI +
Sbjct: 662 DRRQVKPLEMNRMEAEMKYGVSIYEGGVPNSATIRLLEIKDWDIESCGGTHVSNTSEIGA 721
Query: 238 MKVSQI-RTKKGTTKVFYSVG 257
+K+ + R + G ++ Y G
Sbjct: 722 VKIINVERIQDGVIRLEYVAG 742
>sp|C3N7E3|SYA_SULIY Alanine--tRNA ligase OS=Sulfolobus islandicus (strain Y.G.57.14 /
Yellowstone #1) GN=alaS PE=3 SV=1
Length = 900
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 122/261 (46%), Gaps = 23/261 (8%)
Query: 3 TEVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVA 62
T + PT+ YY + K++ +K LIL+ T F+P+GGGQ DTG II
Sbjct: 499 TALQPTEKLYYKDQYMRSFEGKVLGVYKN-----YLILDKTTFYPEGGGQLGDTGLIIDE 553
Query: 63 DSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAG 122
S ++ V D + + ++ H E S ++ G VR ++ RR R H+
Sbjct: 554 KSSKRYEVIDTQKVNDVIVHILKEEPST------IKVGDNVRGEINWERRYRLMRHHTVT 607
Query: 123 HLLDVCMQKVGLGHLEPGKGYHFPDGPYVEYKGSVPQNELQSKTKE----LELEANALIS 178
H++ +KV H+ P+ KG + ++ T+E +E AN++IS
Sbjct: 608 HVILAAAKKVLGEHVWQAGAEKTPE------KGRLDITHHKTLTEEEVKLIENYANSVIS 661
Query: 179 RGGKVMVAVLPYEEASMLCGGCLPH-YIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIIS 237
+V + EA M G + +P +T R++++ D CGGTHVS+ SEI +
Sbjct: 662 DRRQVKPLEMNRMEAEMKYGVSIYEGGVPNSATIRLLEIKDWDIESCGGTHVSNTSEIGA 721
Query: 238 MKVSQI-RTKKGTTKVFYSVG 257
+K+ + R + G ++ Y G
Sbjct: 722 VKIINVERIQDGVIRLEYVAG 742
>sp|Q054G6|SYA_LEPBL Alanine--tRNA ligase OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain L550) GN=alaS PE=3 SV=1
Length = 940
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 98/199 (49%), Gaps = 11/199 (5%)
Query: 37 ALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEME 96
A++L T F+P+GGGQ DTGF+ + FK V D + ++ ++ H+G V + GEF +
Sbjct: 507 AIVLNKTPFYPEGGGQVGDTGFLRQGKNVFK--VLDTQKENDVILHFGEVLS--GEFSI- 561
Query: 97 LEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQKVGLGHLEPGKGYHFPDGPYVEYKGS 156
+E+ V+ +RR+ HS HLL+ ++ + H+ P+ Y+ + S
Sbjct: 562 ---AQELEAEVEAARRERLRFHHSGTHLLNGALRNLLGDHVLQKGSVVSPE--YLRFDFS 616
Query: 157 VPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKL 216
P + +++E N I + V+ LP E+A + G G R+V++
Sbjct: 617 HPSALTSKEIRKIESWVNESIRKNYPVVTKELPIEDAKKI-GAVATFGEKYGDRVRVVQM 675
Query: 217 GDNPGCPCGGTHVSDISEI 235
GD CGGTHVS EI
Sbjct: 676 GDASVEFCGGTHVSHTGEI 694
>sp|Q04QG6|SYA_LEPBJ Alanine--tRNA ligase OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain JB197) GN=alaS PE=3 SV=1
Length = 940
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 98/199 (49%), Gaps = 11/199 (5%)
Query: 37 ALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEME 96
A++L T F+P+GGGQ DTGF+ + FK V D + ++ ++ H+G V + GEF +
Sbjct: 507 AIVLNKTPFYPEGGGQVGDTGFLRQGKNVFK--VLDTQKENDVILHFGEVLS--GEFSI- 561
Query: 97 LEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQKVGLGHLEPGKGYHFPDGPYVEYKGS 156
+E+ V+ +RR+ HS HLL+ ++ + H+ P+ Y+ + S
Sbjct: 562 ---AQELEAEVEAARRERLRFHHSGTHLLNGALRNLLGDHVLQKGSVVSPE--YLRFDFS 616
Query: 157 VPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKL 216
P + +++E N I + V+ LP E+A + G G R+V++
Sbjct: 617 HPSALTSKEIRKIESWVNESIRKNYPVVTKELPIEDAKKI-GAVATFGEKYGDRVRVVQM 675
Query: 217 GDNPGCPCGGTHVSDISEI 235
GD CGGTHVS EI
Sbjct: 676 GDASVEFCGGTHVSHTGEI 694
>sp|P96041|SYA_SULSO Alanine--tRNA ligase OS=Sulfolobus solfataricus (strain ATCC 35092
/ DSM 1617 / JCM 11322 / P2) GN=alaS PE=3 SV=2
Length = 900
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 121/261 (46%), Gaps = 23/261 (8%)
Query: 3 TEVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVA 62
T + PT+ YY + K++ +K LIL+ T F+P+GGGQ DTG II
Sbjct: 499 TTLQPTEKLYYKDQYMRSFEGKVLGIYKN-----YLILDKTTFYPEGGGQLGDTGLIIDE 553
Query: 63 DSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAG 122
S ++ V D + + ++ H E S ++ G VR ++ RR R H+
Sbjct: 554 KSSKRYEVVDTQKVNDVIIHVLKEEPST------IKVGDNVRGEINWERRYRLMRHHTVT 607
Query: 123 HLLDVCMQKVGLGHLEPGKGYHFPDGPYVEYKGSVPQNELQSKTKE----LELEANALIS 178
H++ +KV H+ P+ KG + ++ T+E +E AN++IS
Sbjct: 608 HVILAAAKKVLGDHIWQAGAEKTPE------KGRLDITHHKALTEEEVKLIENYANSVIS 661
Query: 179 RGGKVMVAVLPYEEASMLCGGCLPH-YIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIIS 237
V + EA M G + +P +T R++++ D CGGTHVS+ SEI +
Sbjct: 662 DRRPVKPLEMNRMEAEMKYGVSIYEGGVPNSATIRLLEIKDWDIESCGGTHVSNTSEIGA 721
Query: 238 MKVSQI-RTKKGTTKVFYSVG 257
+K+ + R + G ++ Y G
Sbjct: 722 VKIINVERIQDGIIRLEYVAG 742
>sp|Q57984|SYA_METJA Alanine--tRNA ligase OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=alaS PE=1 SV=1
Length = 892
Score = 79.0 bits (193), Expect = 4e-14, Method: Composition-based stats.
Identities = 68/234 (29%), Positives = 113/234 (48%), Gaps = 31/234 (13%)
Query: 38 LILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMEL 97
+IL+ T F+P+GGGQ +DTG+II D F+ + DV+ ++ IV+H +EN EL
Sbjct: 517 VILDRTAFYPEGGGQKADTGYIIKGDKKFRVV--DVQKENNIVYHK--IEN----LNDEL 568
Query: 98 EKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQKVGLGHL-EPGKGYHFPDGPY-VEYKG 155
++G V+ +D RR R H+A H+++ QKV H+ + G + +
Sbjct: 569 KEGDIVKGVIDWKRRLSLMRNHTATHIINAAAQKVLGRHVWQAGSDVDVDKARLDITHYK 628
Query: 156 SVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEAS------MLCGGCLPHYIPQGS 209
+ + EL K++E AN ++ + + EA + GG +P G+
Sbjct: 629 RISREEL----KDIERVANEIVLNNYNIKSIFMDRNEAEEKFGFRIYQGGVVP-----GN 679
Query: 210 TPRIVKLGDNPGC-----PCGGTHVSDISEIISMKVSQI-RTKKGTTKVFYSVG 257
RIV + D G CGGTH + E+ +K+ + R + G ++ YS G
Sbjct: 680 VLRIVIIEDENGNIVDVQACGGTHCQNTGEVGFIKIIKTERVQDGVERLIYSSG 733
>sp|A7I7S4|SYA_METB6 Alanine--tRNA ligase OS=Methanoregula boonei (strain 6A8) GN=alaS
PE=3 SV=1
Length = 914
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 125/256 (48%), Gaps = 24/256 (9%)
Query: 7 PTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDF 66
PTK YY+ + + +I +F +L+ T+F+P+GGGQP+DTG ++ +DS
Sbjct: 511 PTKKLYYEQPGDTEFEAVVIDFFD-----EYAVLDQTLFYPEGGGQPADTGSLVGSDSMA 565
Query: 67 KFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLD 126
+ V DV ++ H+ SGG L++G+ V+ +DE RR R H+A H+L
Sbjct: 566 R--VDDVIKVGEVILHH----ISGG----VLQRGERVKGMIDEERRFSLMRHHTATHILL 615
Query: 127 VCMQKVGLGHLEPGKGYHFPDGPYVEYK--GSVPQNELQSKTKELELEANALISRGGKVM 184
+ V H+ P+ ++ + + +EL +++E+EAN ++ V
Sbjct: 616 HAAKAVLGVHIHQSGAQKGPESSRIDIRHFKHITPDEL----RKIEIEANRMVMANRPVE 671
Query: 185 VAVLPYEEASMLCGGCLPH-YIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI 243
+++ +A G L +P G RIVK+ + C GTH EI ++K+ ++
Sbjct: 672 ISIENRTKAEQEYGFALYQGGVPPGKDLRIVKVAGDIEA-CAGTHCRSTGEIGAIKILRV 730
Query: 244 R-TKKGTTKVFYSVGS 258
+ G ++ ++ G+
Sbjct: 731 EHIQDGIERIEFAAGT 746
>sp|Q12U25|SYA_METBU Alanine--tRNA ligase OS=Methanococcoides burtonii (strain DSM 6242)
GN=alaS PE=3 SV=1
Length = 923
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 123/252 (48%), Gaps = 16/252 (6%)
Query: 8 TKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFK 67
TK +YD ++ + ++ F ++L++T+ +P+GGGQP+D G + V D K
Sbjct: 511 TKRLFYDEPNRMDFDAVVLEVFDNH-----IVLDNTLMYPEGGGQPADHGTLTVEDVVLK 565
Query: 68 FIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDV 127
+ D + DG+V H + E E+ + KG V V+E RR ++R H+A H+++
Sbjct: 566 VV--DTQMYDGVVVHTI----NEIEDELHIRKGDMVVGRVNEKRRMAHARHHTATHIIND 619
Query: 128 CMQKVGLGHLEPGKGYHFPDGPYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVAV 187
++V H+ F D ++ S + Q + ++E+ AN + + +++
Sbjct: 620 AAREVLGSHIWQTGAQKFADRARLDI--SHYKRITQEEANQIEIIANHTVMKNKRIISDW 677
Query: 188 LPYEEASMLCGGCLPH-YIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI-RT 245
+ EA G L +P G R++++G++ C GTH ++ + +K+ + R
Sbjct: 678 MDRTEAEQKYGFRLYQGGVPPGKMIRVLQVGNDIEA-CAGTHCTNTGLVGPIKILKTERI 736
Query: 246 KKGTTKVFYSVG 257
+ G ++ Y+ G
Sbjct: 737 QDGVERLEYAAG 748
>sp|C3MXH6|SYA_SULIM Alanine--tRNA ligase OS=Sulfolobus islandicus (strain M.14.25 /
Kamchatka #1) GN=alaS PE=3 SV=1
Length = 900
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 121/261 (46%), Gaps = 23/261 (8%)
Query: 3 TEVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVA 62
T + PT+ YY + K++ +K LIL+ T F+P+GGGQ DTG II
Sbjct: 499 TALQPTEKLYYKDQYMRSFEGKVLGVYKN-----YLILDKTTFYPEGGGQLGDTGLIIDE 553
Query: 63 DSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAG 122
S ++ V D + + ++ H E S ++ G VR ++ RR R H+
Sbjct: 554 KSSKRYEVIDTQKVNDVIVHILKEEPST------IKVGDNVRGEINWERRYRLMRHHTVT 607
Query: 123 HLLDVCMQKVGLGHLEPGKGYHFPDGPYVEYKGSVPQNELQSKTKE----LELEANALIS 178
H++ +KV H+ P+ KG + ++ T+E +E AN++IS
Sbjct: 608 HVILAAAKKVLGEHVWQAGAEKTPE------KGRLDITHHKTLTEEEVKLIENYANSVIS 661
Query: 179 RGGKVMVAVLPYEEASMLCGGCLPH-YIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIIS 237
V + EA M G + +P +T R++++ D CGGTHVS+ SEI +
Sbjct: 662 DRRPVKPLEMNRMEAEMKYGVSIYEGGVPNSATIRLLEIKDWDIESCGGTHVSNTSEIGA 721
Query: 238 MKVSQI-RTKKGTTKVFYSVG 257
+K+ + R + G ++ Y G
Sbjct: 722 VKIINVERIQDGVIRLEYVAG 742
>sp|C4KIK1|SYA_SULIK Alanine--tRNA ligase OS=Sulfolobus islandicus (strain M.16.4 /
Kamchatka #3) GN=alaS PE=3 SV=1
Length = 900
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 121/261 (46%), Gaps = 23/261 (8%)
Query: 3 TEVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVA 62
T + PT+ YY + K++ +K LIL+ T F+P+GGGQ DTG II
Sbjct: 499 TALQPTEKLYYKDQYMRSFEGKVLGVYKN-----YLILDKTTFYPEGGGQLGDTGLIIDE 553
Query: 63 DSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAG 122
S ++ V D + + ++ H E S ++ G VR ++ RR R H+
Sbjct: 554 KSSKRYEVIDTQKVNDVIVHILKEEPST------IKVGDNVRGEINWERRYRLMRHHTVT 607
Query: 123 HLLDVCMQKVGLGHLEPGKGYHFPDGPYVEYKGSVPQNELQSKTKE----LELEANALIS 178
H++ +KV H+ P+ KG + ++ T+E +E AN++IS
Sbjct: 608 HVILAAAKKVLGEHVWQAGAEKTPE------KGRLDITHHKTLTEEEVKLIENYANSVIS 661
Query: 179 RGGKVMVAVLPYEEASMLCGGCLPH-YIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIIS 237
V + EA M G + +P +T R++++ D CGGTHVS+ SEI +
Sbjct: 662 DRRPVKPLEMNRMEAEMKYGVSIYEGGVPNSATIRLLEIKDWDIESCGGTHVSNTSEIGA 721
Query: 238 MKVSQI-RTKKGTTKVFYSVG 257
+K+ + R + G ++ Y G
Sbjct: 722 VKIINVERIQDGVIRLEYVAG 742
>sp|C3MZC2|SYA_SULIA Alanine--tRNA ligase OS=Sulfolobus islandicus (strain M.16.27)
GN=alaS PE=3 SV=1
Length = 900
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 121/261 (46%), Gaps = 23/261 (8%)
Query: 3 TEVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVA 62
T + PT+ YY + K++ +K LIL+ T F+P+GGGQ DTG II
Sbjct: 499 TALQPTEKLYYKDQYMRSFEGKVLGVYKN-----YLILDKTTFYPEGGGQLGDTGLIIDE 553
Query: 63 DSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAG 122
S ++ V D + + ++ H E S ++ G VR ++ RR R H+
Sbjct: 554 KSSKRYEVIDTQKVNDVIVHILKEEPST------IKVGDNVRGEINWERRYRLMRHHTVT 607
Query: 123 HLLDVCMQKVGLGHLEPGKGYHFPDGPYVEYKGSVPQNELQSKTKE----LELEANALIS 178
H++ +KV H+ P+ KG + ++ T+E +E AN++IS
Sbjct: 608 HVILAAAKKVLGEHVWQAGAEKTPE------KGRLDITHHKTLTEEEVKLIENYANSVIS 661
Query: 179 RGGKVMVAVLPYEEASMLCGGCLPH-YIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIIS 237
V + EA M G + +P +T R++++ D CGGTHVS+ SEI +
Sbjct: 662 DRRPVKPLEMNRMEAEMKYGVSIYEGGVPNSATIRLLEIKDWDIESCGGTHVSNTSEIGA 721
Query: 238 MKVSQI-RTKKGTTKVFYSVG 257
+K+ + R + G ++ Y G
Sbjct: 722 VKIINVERIQDGVIRLEYVAG 742
>sp|B9LUG4|SYA_HALLT Alanine--tRNA ligase OS=Halorubrum lacusprofundi (strain ATCC 49239
/ DSM 5036 / JCM 8891 / ACAM 34) GN=alaS PE=3 SV=1
Length = 926
Score = 77.4 bits (189), Expect = 1e-13, Method: Composition-based stats.
Identities = 64/248 (25%), Positives = 116/248 (46%), Gaps = 16/248 (6%)
Query: 12 YYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVH 71
+YD+ + + + ++ F+ ++G ++L+ T+F+P+GGGQP+D G + ++ +
Sbjct: 520 FYDDQGRTEFEAVVLDVFELEEGYD-VVLDQTMFYPEGGGQPADRGQLTAGETTVDVV-- 576
Query: 72 DVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQK 131
DV+ ++G+V H + GEF VR VD RR H+A HL+ ++
Sbjct: 577 DVQERNGVVLHRTDADPGKGEF---------VRGQVDGDRRDRLRAHHTATHLIGHAARE 627
Query: 132 VGLGHLEPGKGYHFPDGPYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVAVLPYE 191
V H+ D ++ + + + + KE+E ANAL+ V
Sbjct: 628 VLGNHVRQAGAQKGIDSSRLDIRHF--ERITREQVKEIERVANALVRDDVPVRQEWPDRN 685
Query: 192 EASMLCGGCLPH-YIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIR-TKKGT 249
EA G L +P G+ R++ +GD C GTHV EI ++KV + + G
Sbjct: 686 EAESEHGFDLYQGGVPPGTNIRLIHVGDEDVQACAGTHVERTGEIGAVKVLKTEPVQDGV 745
Query: 250 TKVFYSVG 257
++ ++ G
Sbjct: 746 ERIVFAAG 753
>sp|Q18E76|SYA_HALWD Alanine--tRNA ligase OS=Haloquadratum walsbyi (strain DSM 16790)
GN=alaS PE=3 SV=1
Length = 923
Score = 75.9 bits (185), Expect = 3e-13, Method: Composition-based stats.
Identities = 66/253 (26%), Positives = 118/253 (46%), Gaps = 27/253 (10%)
Query: 12 YYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVH 71
YYD+ + + ++ F+ D G ++L+ T+F+P+GGGQP+D G + + + +
Sbjct: 519 YYDDQTGTEFEAVVLDIFEQDTGYD-IVLDQTMFYPEGGGQPADHGTLTTEEETIE--IT 575
Query: 72 DVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQK 131
DV+++DG++ H EN G KG +R +D RR+ + H+A H++ +K
Sbjct: 576 DVKAQDGVILHQA-TENPG--------KGDFIRGQLDVERRRRLMQHHTATHIIGHAARK 626
Query: 132 VGLGHLEPGKGYHFPDGPYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVAVLPYE 191
V H+ D + N +++KT +E AN +I + V
Sbjct: 627 VLGDHVRQAGAQKGTDSARFDLTHYERINRIEAKT--IESVANDIIRQNISVRQDWPDRH 684
Query: 192 EAS------MLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIR- 244
EA + GG IP G R + +GD+ CGGTHV+ +I ++K+
Sbjct: 685 EAENEHGFDLYQGG-----IPPGQNIRTITIGDDIQA-CGGTHVTRTGDIGTIKILTTEP 738
Query: 245 TKKGTTKVFYSVG 257
+ G ++ ++ G
Sbjct: 739 VQDGVERIVFAAG 751
>sp|Q9UY36|SYA_PYRAB Alanine--tRNA ligase OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=alaS PE=3 SV=1
Length = 914
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 121/261 (46%), Gaps = 34/261 (13%)
Query: 8 TKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFK 67
T+ YY++ + ++++ GD ++L+ T F+P+GGGQP DTG + V S+ K
Sbjct: 516 TRTLYYEDPFMKEFEARVLRVI-GD----WIVLDQTAFYPEGGGQPYDTGVLFVNGSEVK 570
Query: 68 FIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDV 127
V +V+ ++ H VEN G ++G EVR +D RR + R H+ H+L
Sbjct: 571 --VTNVQKVGKVIVHK--VENPGL-----FKEGMEVRGRIDWDRRIQHMRHHTGTHVLMG 621
Query: 128 CMQKVGLGHLEPGKGYHFPDGPYVE---YKGSVPQNELQSKTKELELEANALISRGGKVM 184
+ +V H+ D ++ YK + EL +E+E AN ++ KV
Sbjct: 622 ALVRVLGKHVWQAGSQLTTDWARLDISHYK-RISDEEL----REIERLANRIVMEDRKVT 676
Query: 185 VAVLPYEEAS------MLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISM 238
LP EA + GG +P G R+VK+ D CGGTH+ + +
Sbjct: 677 WEWLPRTEAEQRYGFRLYQGGVVP-----GRVIRVVKIEDWDVQACGGTHLPSTGLVGPI 731
Query: 239 KVSQI-RTKKGTTKVFYSVGS 258
K+ + R + G ++ ++ G
Sbjct: 732 KILRTERIQDGVERIIFACGE 752
>sp|Q2NEW4|SYA_METST Alanine--tRNA ligase OS=Methanosphaera stadtmanae (strain DSM 3091)
GN=alaS PE=3 SV=1
Length = 903
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 120/259 (46%), Gaps = 28/259 (10%)
Query: 8 TKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFK 67
TKL +YD++ + T+K++ + +IL TI++P+GGGQPSD G I + +
Sbjct: 488 TKLSFYDDLKQRTFTAKVLGVVDSN----KIILNQTIYYPEGGGQPSDIGTITRVNGEVL 543
Query: 68 FIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDV 127
I + + DGIV H+ E+ E +++ G+E+ +D RR L +R H+A HL+
Sbjct: 544 NITY-AQKVDGIVLHHVAKED---ESKLDNIVGEEITGEIDSKRRDLLTRNHTATHLVIA 599
Query: 128 CMQKVGLGHLEPGKGYHFPDGPYVE---YKGSVPQNELQSKTKELELEANALISRGGKVM 184
++V H+ D ++ YK + E+Q E+E AN + V
Sbjct: 600 SAREVLGKHIWQAGAQKGLDKTRIDLSHYK-RISHEEVQ----EIERLANKRVQENHPVN 654
Query: 185 VAVLPYEEAS------MLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISM 238
+ +A + GG +P G R+V++ C GTH +I +
Sbjct: 655 IQWYDRTDAEVKYGFKLYQGGIVP-----GKNIRVVEIPGIDVQACAGTHCEKTGDIGVI 709
Query: 239 KVSQI-RTKKGTTKVFYSV 256
K+ + R + G ++ Y+V
Sbjct: 710 KLLRTERVQDGVERLEYAV 728
>sp|A8A8X8|SYA_IGNH4 Alanine--tRNA ligase OS=Ignicoccus hospitalis (strain KIN4/I / DSM
18386 / JCM 14125) GN=alaS PE=3 SV=1
Length = 901
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 106/232 (45%), Gaps = 25/232 (10%)
Query: 34 GRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENSGGEF 93
R +IL+ T F+P+GGGQ +DTG I D ++ + DV+ ++ H + SGG+
Sbjct: 526 NRNYVILDKTAFYPEGGGQAADTGVIASGDESYRVV--DVQKVGDVIVHVLDRDYSGGKV 583
Query: 94 EMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQKVGLGHLEPGKGYHFPDGPYVEY 153
+ G+ +D RR R H+ HLL ++KV H+ P+ ++
Sbjct: 584 VV----GR-----IDWERRYRLMRHHTGTHLLLGALRKVLGDHVWQAGAEKTPEKARFDF 634
Query: 154 KGSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEA------SMLCGGCLPHYIPQ 207
P + + +++E AN +I K+ LP EA S+ GG +P
Sbjct: 635 THHKPLT--REEVRKIEEVANKVIDERRKIRAFTLPRNEAEARYWFSIYQGG-----VPM 687
Query: 208 GSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIR-TKKGTTKVFYSVGS 258
R+V++ C GTH+S+ E+ S+K+ R + G +V + G+
Sbjct: 688 SKDIRLVEIEGWDVEACFGTHLSNTGEVGSLKIISTRKIQDGVVRVEFVAGT 739
>sp|O28029|SYA_ARCFU Alanine--tRNA ligase OS=Archaeoglobus fulgidus (strain ATCC 49558 /
VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=alaS PE=1
SV=1
Length = 906
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 120/261 (45%), Gaps = 22/261 (8%)
Query: 1 MNTEVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFII 60
+ E T+ YYD+ L+ +++I +GD +IL + F+P+ GGQ +D G++I
Sbjct: 497 LQNEYPATEKLYYDDPTLLEFEAEVIG-VEGD----FVILNRSAFYPESGGQDNDVGYLI 551
Query: 61 VADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHS 120
KF V DV DG+V H VV+ + E G +V+ +D R + R HS
Sbjct: 552 ANGG--KFEVVDVLEADGVVLH--VVKGAKPEV------GTKVKGVIDSDVRWRHMRHHS 601
Query: 121 AGHLLDVCMQKVGLGHL-EPGKGYHFPDGPYVEYKGSVPQNELQSKTKELELEANALISR 179
A H+L +QKV H+ + G F P E + KE+E+ AN I
Sbjct: 602 ATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRRPSEE---EIKEIEMLANREILA 658
Query: 180 GGKVMVAVLPYEEASMLCGGCLPH-YIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISM 238
+ + EA G L +P G R+V++GD+ CGGTH EI +
Sbjct: 659 NKPIKWEWMDRIEAERKFGFRLYQGGVPPGRKIRVVQVGDDVQA-CGGTHCRSTGEIGML 717
Query: 239 KVSQIRT-KKGTTKVFYSVGS 258
K+ ++ + + G + ++ G
Sbjct: 718 KILKVESIQDGVIRFEFAAGE 738
>sp|O58035|SYA_PYRHO Alanine--tRNA ligase OS=Pyrococcus horikoshii (strain ATCC 700860 /
DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=alaS PE=1
SV=1
Length = 915
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 120/261 (45%), Gaps = 34/261 (13%)
Query: 8 TKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFK 67
T+ YY++ + +K++ K +IL++T F+P+GGGQP DTG +IV + K
Sbjct: 516 TRRLYYEDPFMKEFDAKVLRVIKD-----WVILDATAFYPEGGGQPYDTGVLIVNGREVK 570
Query: 68 FIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDV 127
V +V+ ++ H VE+ G E + GK +D RR + R H+ H+L
Sbjct: 571 --VTNVQKVGKVIIHK--VEDPGAFKEGMIVHGK-----IDWKRRIQHMRHHTGTHVLMG 621
Query: 128 CMQKVGLGHLEPGKGYHFPDGPYVE---YKGSVPQNELQSKTKELELEANALISRGGKVM 184
+ +V H+ D ++ YK + + EL KE+E+ AN ++ KV
Sbjct: 622 ALVRVLGRHVWQAGSQLTTDWARLDISHYK-RISEEEL----KEIEMLANRIVMEDRKVT 676
Query: 185 VAVLPYEEAS------MLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISM 238
LP A + GG +P G R+VK+ D CGGTH+ + +
Sbjct: 677 WEWLPRTTAEQKYGFRLYQGGVVP-----GREIRVVKIEDWDVQACGGTHLPSTGLVGPI 731
Query: 239 KVSQI-RTKKGTTKVFYSVGS 258
K+ + R + G ++ ++ G
Sbjct: 732 KILRTERIQDGVERIIFACGE 752
>sp|Q9JTG4|SYA_NEIMA Alanine--tRNA ligase OS=Neisseria meningitidis serogroup A /
serotype 4A (strain Z2491) GN=alaS PE=3 SV=1
Length = 874
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 103/231 (44%), Gaps = 22/231 (9%)
Query: 20 QSTSKLISYFK----------GDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFI 69
Q+ SK+++ +K GD G A++++ T F+ + GGQ D G+I S+ +F
Sbjct: 462 QTESKVLALYKDGEQVNELNEGDSG--AVVIDFTPFYAESGGQVGDVGYIF--SSENRFE 517
Query: 70 VHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCM 129
V D + VF V+ SG L+ G V VD+ R N R HSA HL+ +
Sbjct: 518 VRDTQKIKAAVFGQFGVQTSG-----RLKVGDSVTAKVDDEIRNANMRNHSATHLMHKAL 572
Query: 130 QKVGLGHLEPGKGYHFPDGPYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVAVLP 189
+ V GH+E KG + S PQ + E+E N + V A++
Sbjct: 573 RDVLGGHVEQ-KG-SLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAIMS 630
Query: 190 YEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKV 240
E+A G + G R++++G CGGTHVS +I K+
Sbjct: 631 MEDAQK-TGAMMLFGEKYGEEVRVLQMGGFSTELCGGTHVSRTGDIGLFKI 680
>sp|A9M198|SYA_NEIM0 Alanine--tRNA ligase OS=Neisseria meningitidis serogroup C (strain
053442) GN=alaS PE=3 SV=2
Length = 874
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 103/231 (44%), Gaps = 22/231 (9%)
Query: 20 QSTSKLISYFK----------GDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFI 69
Q+ SK+++ +K GD G A++++ T F+ + GGQ D G+I S+ +F
Sbjct: 462 QTESKVLALYKDGEQVNELNEGDSG--AVVIDFTPFYAESGGQVGDVGYIF--SSENRFE 517
Query: 70 VHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCM 129
V D + VF V+ SG L+ G V VD+ R N R HSA HL+ +
Sbjct: 518 VRDTQKIKAAVFGQFGVQTSG-----RLKVGDSVTAKVDDEIRNANMRNHSATHLMHKAL 572
Query: 130 QKVGLGHLEPGKGYHFPDGPYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVAVLP 189
+ V GH+E KG + S PQ + E+E N + V A++
Sbjct: 573 RDVLGGHVEQ-KG-SLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAIMS 630
Query: 190 YEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKV 240
E+A G + G R++++G CGGTHVS +I K+
Sbjct: 631 MEDAQK-TGAMMLFGEKYGEEVRVLQMGGFSTELCGGTHVSRTGDIGLFKI 680
>sp|A5UKU6|SYA_METS3 Alanine--tRNA ligase OS=Methanobrevibacter smithii (strain PS /
ATCC 35061 / DSM 861) GN=alaS PE=3 SV=1
Length = 897
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 109/231 (47%), Gaps = 17/231 (7%)
Query: 33 DGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENSGGE 92
DG+ L+ + T+F+P+GGGQPSD G I V + ++ + +V H+ G+
Sbjct: 512 DGKNTLVFDKTVFYPEGGGQPSDVGTISVDGAVVN--INYAEKVNNVVLHH-----VDGD 564
Query: 93 FEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQKVGLGHLEPG---KGYHFPDGP 149
+++ GK+V +D +RR +R HSA HL+ +K+ H+ KG
Sbjct: 565 VDLDNFVGKKVEGKIDWNRRITLARHHSATHLIVAAARKILGEHIWQAGAQKGVSRSRID 624
Query: 150 YVEYKGSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPH-YIPQG 208
YK + Q EL E+E AN + ++ + +EA L G L I G
Sbjct: 625 LSHYK-RISQEELN----EIEKLANEYVMDNIELDIKFYTRDEAESLYGFKLYQGGIVPG 679
Query: 209 STPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI-RTKKGTTKVFYSVGS 258
+ R+VK+ C GTHV +I +K+++ R + G ++ +S G+
Sbjct: 680 KSIRVVKIPGIDVQACAGTHVLRTGDIGPIKINKTERVQDGVERIDFSAGT 730
>sp|Q7NI36|SYA_GLOVI Alanine--tRNA ligase OS=Gloeobacter violaceus (strain PCC 7421)
GN=alaS PE=3 SV=1
Length = 871
Score = 72.4 bits (176), Expect = 3e-12, Method: Composition-based stats.
Identities = 65/237 (27%), Positives = 112/237 (47%), Gaps = 29/237 (12%)
Query: 29 FKGDDGRRA-------LILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVF 81
F+G+ RA L+L+ T F+P+GGGQ D G++ + D + DV+ +D ++
Sbjct: 466 FEGEPIERASAGASVQLVLDQTPFYPEGGGQIGDRGYL--SGPDLLVRIEDVQKRDTVIL 523
Query: 82 HYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQKV-GLGHLEPG 140
H G +E + G V+ +D + R+ + H+A HLL ++KV G + G
Sbjct: 524 HTGRIERG------TVATGDSVQAQIDLADRRRSQAHHTATHLLQAALKKVLGESVQQQG 577
Query: 141 KGYHFPDGPYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGC 200
F + + S P+ Q++ +++E N I+ + V+P ++A G
Sbjct: 578 SLVAFDR---LRFDFSWPKALSQAEIQQVEDLVNTWIAEAHTLSQEVMPIDQAK--ARGA 632
Query: 201 LPHYIPQ-GSTPRIVKLGDNPGCP---CGGTHVSDISEIISMK-VSQIRTKKGTTKV 252
L + + GS R++ D PG CGGTHV + +EI K VS+ G ++
Sbjct: 633 LAFFGEKYGSEVRVI---DVPGVSIELCGGTHVRNTAEIGLFKMVSETGIASGVRRI 686
>sp|A9KMW7|SYA1_CLOPH Alanine--tRNA ligase 1 OS=Clostridium phytofermentans (strain ATCC
700394 / DSM 18823 / ISDg) GN=alaS1 PE=3 SV=1
Length = 879
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 20/208 (9%)
Query: 38 LILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMEL 97
+I++ T F+ GGQ +D GFI+ D++F+ + ++ K G V H G V + G F++
Sbjct: 492 IIVDETPFYATMGGQTADIGFIVGKDAEFE-VEDTIKLKGGRVGHLGTV--TKGSFKV-- 546
Query: 98 EKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQKVGLGHLEPGKGYHFPDGPYVEYKGSV 157
G+ V L +D +R+ + HSA HLL ++ V H+E + + ++
Sbjct: 547 --GETVTLTIDTQKRQAIGKNHSATHLLQKALRNVLGSHVEQAGSFVTSERLRFDF---- 600
Query: 158 PQNELQSKTKE----LELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQ-GSTPR 212
+ TKE +E N I++ V+ V+ E+A G + + + G + R
Sbjct: 601 --THFSALTKEEIAKVEAMVNEEIAKNVPVVTDVMSVEDAKK--SGAMALFGEKYGDSVR 656
Query: 213 IVKLGDNPGCPCGGTHVSDISEIISMKV 240
+V +GD CGGTHV++ I K+
Sbjct: 657 VVTMGDFSKELCGGTHVANTGSITVFKI 684
>sp|A6US09|SYA_METVS Alanine--tRNA ligase OS=Methanococcus vannielii (strain SB / ATCC
35089 / DSM 1224) GN=alaS PE=3 SV=1
Length = 892
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 129/259 (49%), Gaps = 36/259 (13%)
Query: 8 TKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFK 67
T+L ++ N ++ + +K++ + +IL+ T+F+ +GGGQ D G I D
Sbjct: 503 TELLFFKNTMQSEFEAKVLKIVD-----KYIILDRTVFYAEGGGQKYDIGQISGVD---- 553
Query: 68 FIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDV 127
V DV+ K+GIVFH V++ S + E L KG E+ E+R KL R H+A H+++
Sbjct: 554 --VVDVQKKNGIVFH-KVLDISKFK-EGNLVKG-ELNF---ENRLKL-MRNHTATHVINA 604
Query: 128 CMQKVGLGHL-EPGKGYHFPDGPY-VEYKGSVPQNELQSKTKELELEANALISRGGKVMV 185
+++V H+ + G G V + + + E+ KE+E AN ++ G V
Sbjct: 605 ALKQVLGKHVWQTGSNVDTEKGRLDVTHYERISRKEI----KEIEKIANEIVLLGKPVTC 660
Query: 186 AVLPYEEAS------MLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMK 239
+ +A + GG +P G T RIV++ CGGTHV++ SEI +K
Sbjct: 661 KFMDRNDAEQEYGFKIYQGGVVP-----GDTLRIVEIDGIDVEACGGTHVTNTSEIGYIK 715
Query: 240 VSQI-RTKKGTTKVFYSVG 257
V + R + G ++ YS G
Sbjct: 716 VLKTERIQDGVERLEYSTG 734
>sp|Q2FQD6|SYA_METHJ Alanine--tRNA ligase OS=Methanospirillum hungatei (strain JF-1 /
DSM 864) GN=alaS PE=3 SV=1
Length = 916
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 116/255 (45%), Gaps = 24/255 (9%)
Query: 8 TKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFK 67
T+ +Y+ ++ +K++ F G + ++L+ T+F+P+GGGQP DTG + D
Sbjct: 513 TRKLFYERPGSMEFEAKVLEIFDG----QYVVLDQTLFYPEGGGQPGDTGLFLTPDG--- 565
Query: 68 FIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDV 127
VR D I ++ G + KG +R +DE RR R H+A H+L
Sbjct: 566 ---LTVRVCDTIKLGESILHRIDGG---NVRKGDMIRGILDEDRRLSLMRHHTATHILLH 619
Query: 128 CMQKVGLGHLEPG---KGYHFPDGPYVEYKGSVPQNELQSKTKELELEANALISRGGKVM 184
++V H+ KG + YK P+ + K++E+ AN L+
Sbjct: 620 AAKEVLGAHIHQAGAQKGEYSSRIDIRHYKHITPE-----ELKKIEVVANRLVMANSSTS 674
Query: 185 VAVLPYEEASMLCGGCLPH-YIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI 243
+A +A G CL +P GS R+VK+ + C GTH + +I ++ + ++
Sbjct: 675 IAWEDRTDAEQKYGFCLYQGGVPPGSRIRVVKVAGDIEA-CAGTHCAHTGDIGTISIIRV 733
Query: 244 R-TKKGTTKVFYSVG 257
+ G ++ ++ G
Sbjct: 734 EHVQDGVERLEFAAG 748
>sp|A2ST90|SYA_METLZ Alanine--tRNA ligase OS=Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z) GN=alaS PE=3 SV=1
Length = 913
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 118/255 (46%), Gaps = 26/255 (10%)
Query: 8 TKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFK 67
T+ +Y+ ++ + ++ F ++L++T+F+P+GGGQPSDTG ++ + +
Sbjct: 512 TRKSFYERPADMEFDATVLDIFDN-----YVVLDATLFYPEGGGQPSDTGMLVTKSTMVR 566
Query: 68 FIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDV 127
V +V + ++ H V EN+ L++G V+ +DE RR R HSA H++
Sbjct: 567 --VDEVVKWENVILH-KVRENT-------LKRGDRVKGVLDEDRRWALMRHHSATHMVLR 616
Query: 128 CMQKVGLGHLEPGKGYHFPDGPYVE---YKGSVPQNELQSKTKELELEANALISRGGKVM 184
++V H+ D ++ Y P+ + K++E AN L+ M
Sbjct: 617 AAKEVLGPHVHQAGSQLSTDVARLDIRHYTHITPE-----ELKQMETIANRLVMENLPTM 671
Query: 185 VAVLPYEEASMLCGGCLPH-YIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI 243
V + +A G L +P G R+V++G C GTH EI +K+ ++
Sbjct: 672 VKIENRVKAEQKFGFALYQGGVPPGKDIRVVQMGAEVQA-CAGTHCQSTGEIGPIKILKL 730
Query: 244 R-TKKGTTKVFYSVG 257
+ G ++ ++ G
Sbjct: 731 EHIQDGVERIEFAAG 745
>sp|Q67MV8|SYA_SYMTH Alanine--tRNA ligase OS=Symbiobacterium thermophilum (strain T /
IAM 14863) GN=alaS PE=3 SV=1
Length = 872
Score = 71.2 bits (173), Expect = 6e-12, Method: Composition-based stats.
Identities = 64/213 (30%), Positives = 97/213 (45%), Gaps = 15/213 (7%)
Query: 31 GDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRS-KDGIVFHYGVVENS 89
G+ ++L+ T F+ +GGGQ DTG I+ + V D R G HYG V+
Sbjct: 490 GEGSSVIIVLDRTPFYAEGGGQVGDTGQIVAPG--LRVEVEDCRKLPSGHHLHYGTVQ-- 545
Query: 90 GGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQKVGLGHLEPGKGYHFPDGP 149
E LE G++V VD +RK + H+A HLL +++V H++ PD
Sbjct: 546 ----EGFLEVGQQVEARVDARKRKDTQKNHTATHLLHKALREVLGTHVQQAGSLVAPDRL 601
Query: 150 YVEYKGSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQ-G 208
++ + P Q +E NA I V +P +EA L G + + + G
Sbjct: 602 RFDFTHTGPMTPEQ--IAAVEEMINAEIEAAEPVTWTEMPLDEARAL--GAMALFGEKYG 657
Query: 209 STPRIVKLGDNPGCP-CGGTHVSDISEIISMKV 240
R+V +GD CGG HVS+ SE+ K+
Sbjct: 658 EIVRVVSVGDGWSRELCGGCHVSNTSEVQYFKI 690
>sp|Q5F7C4|SYA_NEIG1 Alanine--tRNA ligase OS=Neisseria gonorrhoeae (strain ATCC 700825 /
FA 1090) GN=alaS PE=3 SV=1
Length = 874
Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 104/236 (44%), Gaps = 32/236 (13%)
Query: 20 QSTSKLISYFK----------GDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFI 69
Q+ SK+++ +K GD G A++++ T F+ + GGQ D G+I ++ +F
Sbjct: 462 QTESKVLALYKDGEQVVELNEGDSG--AVVIDFTPFYAESGGQVGDVGYIFAGEN--RFE 517
Query: 70 VHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCM 129
V D + VF V+ SG L+ G + VD+ R N R HSA HL+ +
Sbjct: 518 VRDTQKIKAAVFGQFGVQTSG-----RLKVGDSITAKVDDEIRNANMRNHSATHLMHKAL 572
Query: 130 QKVGLGHLEPGKGYHFPDGPYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVAVLP 189
+ V GH+E KG + S PQ + E+E N I V A++
Sbjct: 573 RDVLGGHVEQ-KG-SLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAIMS 630
Query: 190 YEEAS-----MLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKV 240
E+A ML G G R++++G CGGTHVS +I K+
Sbjct: 631 MEDAQKTDAMMLFGE------KYGDEVRVLQMGGFSTELCGGTHVSRTGDIGLFKI 680
>sp|B0SPT4|SYA_LEPBP Alanine--tRNA ligase OS=Leptospira biflexa serovar Patoc (strain
Patoc 1 / ATCC 23582 / Paris) GN=alaS PE=3 SV=1
Length = 919
Score = 70.9 bits (172), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 95/200 (47%), Gaps = 13/200 (6%)
Query: 37 ALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEME 96
++L+ T F+ +GGGQ DTG++ F+F V D + ++ H G++ +
Sbjct: 491 VIVLDKTPFYAEGGGQIGDTGYL--KKEGFQFQVQDTQKENDTFLHMGMI------LKGN 542
Query: 97 LEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQKVGLGHLEPGKGYHFPDGPYVEYKGS 156
L G V ++ RR+ + HS HLL+ ++++ LG KG Y+ + S
Sbjct: 543 LSVGDVVDSEIEVERRQNLANHHSGTHLLNGALRRI-LGSHVTQKG-SIVSADYLRFDFS 600
Query: 157 VPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQ-GSTPRIVK 215
P+ + + ++E + N +S V VL +A G L + + GS R++
Sbjct: 601 HPKALSKEEIIQIETDVNEAVSANIPVKTEVLEIGQAKE--SGALSMFDEKYGSVVRVIS 658
Query: 216 LGDNPGCPCGGTHVSDISEI 235
+GD CGGTHVS+ EI
Sbjct: 659 MGDKSKEFCGGTHVSNTKEI 678
>sp|B0SGD3|SYA_LEPBA Alanine--tRNA ligase OS=Leptospira biflexa serovar Patoc (strain
Patoc 1 / Ames) GN=alaS PE=3 SV=1
Length = 919
Score = 70.9 bits (172), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 95/200 (47%), Gaps = 13/200 (6%)
Query: 37 ALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEME 96
++L+ T F+ +GGGQ DTG++ F+F V D + ++ H G++ +
Sbjct: 491 VIVLDKTPFYAEGGGQIGDTGYL--KKEGFQFQVQDTQKENDTFLHMGMI------LKGN 542
Query: 97 LEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQKVGLGHLEPGKGYHFPDGPYVEYKGS 156
L G V ++ RR+ + HS HLL+ ++++ LG KG Y+ + S
Sbjct: 543 LSVGDVVDSEIEVERRQNLANHHSGTHLLNGALRRI-LGSHVTQKG-SIVSADYLRFDFS 600
Query: 157 VPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQ-GSTPRIVK 215
P+ + + ++E + N +S V VL +A G L + + GS R++
Sbjct: 601 HPKALSKEEIIQIETDVNEAVSANIPVKTEVLEIGQAKE--SGALSMFDEKYGSVVRVIS 658
Query: 216 LGDNPGCPCGGTHVSDISEI 235
+GD CGGTHVS+ EI
Sbjct: 659 MGDKSKEFCGGTHVSNTKEI 678
>sp|Q5UZE6|SYA_HALMA Alanine--tRNA ligase OS=Haloarcula marismortui (strain ATCC 43049 /
DSM 3752 / JCM 8966 / VKM B-1809) GN=alaS PE=3 SV=1
Length = 927
Score = 70.9 bits (172), Expect = 9e-12, Method: Composition-based stats.
Identities = 63/249 (25%), Positives = 116/249 (46%), Gaps = 16/249 (6%)
Query: 12 YYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVH 71
YY++ + + + ++ F D+ ++L+ T+F+P+GGGQP D G ++ D V
Sbjct: 522 YYEDQQRTEFEAVVLEVFDRDEDTYDVVLDQTMFYPEGGGQPPDKG--TLSTDDVSAEVT 579
Query: 72 DVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQK 131
DV+ ++ H + GEF VR VD +RR+ + H+A H++ ++
Sbjct: 580 DVQQYGDVIVHTCDDDPGKGEF---------VRGQVDATRRQRLMQHHTATHIVIHSARQ 630
Query: 132 VGLGHLEPGKGYHFPDGPYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVAVLPYE 191
V H+ D ++ + ++ + K KE+E AN +I V
Sbjct: 631 VLGEHVRQAGAQKGTDSARIDIRHY--ESVSREKVKEIERLANDIIQDNITVSQEWPDRN 688
Query: 192 EASMLCGGCLPH-YIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI-RTKKGT 249
+A G L IP G R++ +GD+ CGGTHV+ +I ++K+ R + G
Sbjct: 689 DAEERYGFDLYQGGIPAGEQIRLITVGDDVQA-CGGTHVARTGDIGAVKLLNTERIQDGV 747
Query: 250 TKVFYSVGS 258
++ ++ G+
Sbjct: 748 IRLTFAAGN 756
>sp|A6LMH9|SYA_THEM4 Alanine--tRNA ligase OS=Thermosipho melanesiensis (strain BI429 /
DSM 12029) GN=alaS PE=3 SV=1
Length = 859
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 116/245 (47%), Gaps = 28/245 (11%)
Query: 6 IPTKLDYYD------NMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFI 59
I TK YD +LK++ T K + K D LIL+ T F+P+ GGQ +D G
Sbjct: 445 ISTKFVGYDVLSTNARVLKIR-TEKFVDEVK--DVECELILDETPFYPEKGGQVADKG-- 499
Query: 60 IVADSDFKFIVHDVRSK-DGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRL 118
++ + +F+V +V +GI+ H G+ + ++ G + VDE +RK +R
Sbjct: 500 VIKGKNGEFVVTNVYVPVEGIIVH-------KGKLKGKIRVGDAIFASVDEKKRKATARN 552
Query: 119 HSAGHLLDVCMQKVGLGHLEPGKGYHFPDGPYVEYK--GSVPQNELQSKTKELELEANAL 176
H+A HLL ++KV H+ P+ ++ ++ + E++ ++E N
Sbjct: 553 HTATHLLHAALRKVLGTHVRQAGSLVAPERLRFDFTHYAALTKEEIE----KIEKMVNEK 608
Query: 177 ISRGGKVMVAVLPYEEASMLCGGCLPHYIPQ-GSTPRIVKLGDNPGCPCGGTHVSDISEI 235
I V V+ Y+EA + G + + + G R+V++ D CGGTHV + EI
Sbjct: 609 ILEAIDVNTKVMSYDEA--IKNGAMALFEEKYGDKVRVVRIRDFSEELCGGTHVKNTGEI 666
Query: 236 ISMKV 240
K+
Sbjct: 667 GLFKI 671
>sp|B2SZN0|SYA_BURPP Alanine--tRNA ligase OS=Burkholderia phytofirmans (strain DSM 17436
/ PsJN) GN=alaS PE=3 SV=1
Length = 874
Score = 70.5 bits (171), Expect = 1e-11, Method: Composition-based stats.
Identities = 60/211 (28%), Positives = 107/211 (50%), Gaps = 16/211 (7%)
Query: 33 DGRRALI-LESTIFHPQGGGQPSDTGFIIVADSDFKFIVHD-VRSKDGIVFHYGVVENSG 90
DGR+A++ L+ T F+ + GGQ D G ++A++ +F V D ++ + +V H+G +E
Sbjct: 484 DGRQAVVVLDHTPFYAESGGQVGDQG--VLANASVRFAVSDTLKVQADVVGHHGTLEQG- 540
Query: 91 GEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQKVGLGHLEPGKGYHFPDGPY 150
L+ G V+ +D RR +R HSA HL+ +++V H++ D
Sbjct: 541 -----TLKVGDVVKAEIDAVRRARTARNHSATHLMHKALREVLGSHVQQKGSLVDADKTR 595
Query: 151 VEYKGSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQ-GS 209
++ + P + Q + E + A L + G +V V+P++EA + GG + + + G
Sbjct: 596 FDFAHNAPMTDEQIRRVEEIVNAEVLANAPG--IVRVMPFDEA--VKGGAMALFGEKYGD 651
Query: 210 TPRIVKLGDNPGCPCGGTHVSDISEIISMKV 240
R++ LG + CGGTHV +I K+
Sbjct: 652 EVRVLDLGFSREL-CGGTHVHRTGDIGLFKI 681
>sp|A8MBI2|SYA_CALMQ Alanine--tRNA ligase OS=Caldivirga maquilingensis (strain ATCC
700844 / DSMZ 13496 / JCM 10307 / IC-167) GN=alaS PE=3
SV=1
Length = 899
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 119/267 (44%), Gaps = 42/267 (15%)
Query: 7 PTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDF 66
PT+ +Y++ + +K++ KG + ++L+STIF+P+GGGQP+D G + +
Sbjct: 497 PTRELFYEDTYAFEGKAKVLKVIKG----KYIVLDSTIFYPEGGGQPADRGVLRFNGVEA 552
Query: 67 KFIVHDVRSKDGIVFHY--GVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHL 124
K + DV+ ++ H G G EM +D RR R+H+ H+
Sbjct: 553 KVV--DVQRVGPVIVHVIDGPTPGVGDVVEMR----------IDSERRLGLMRMHTGTHI 600
Query: 125 LDVCMQKVGLGHL-EPGKGYHFPDG--PYVEYKGSVPQNELQSKTKELELEANALISRGG 181
L +++V H+ + G P Y+ P + K +E AN ++
Sbjct: 601 LLQSIRRVLGKHVWQAGAQKDIPLSRLDVTHYRLPTP-----DEVKRIEELANEVVLSDL 655
Query: 182 KVMVAVLPYEEAS------MLCGGCLPHYIPQGSTPRIVKLGDNPGC----PCGGTHVSD 231
V ++P EA + GG +P G RIVK+G+ CGGTH+
Sbjct: 656 PVKAELMPRNEAEAKYGFIIYQGGVVP-----GGEVRIVKVGEGNDTYDVEACGGTHLDR 710
Query: 232 ISEIISMKVSQI-RTKKGTTKVFYSVG 257
S I +K+ ++ + ++G + ++ G
Sbjct: 711 TSRIGLIKIVKVDKIQEGVIRFIFTTG 737
>sp|B0S104|SYA_FINM2 Alanine--tRNA ligase OS=Finegoldia magna (strain ATCC 29328)
GN=alaS PE=3 SV=1
Length = 873
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 114/244 (46%), Gaps = 21/244 (8%)
Query: 4 EVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRA------LILESTIFHPQGGGQPSDTG 57
E+ TK D Y++ L+ SK+I + D+ ++L+ T F+ +GGGQ D G
Sbjct: 447 ELPETKFDGYNS---LKDESKVIEIYGEDENNLKAGQMGIIVLDCTTFYGEGGGQVGDKG 503
Query: 58 FIIVADSDFKFIVHDVRSKDGIVF-HYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNS 116
I+ + +FK V+D + VF HY V E L G +V + VDE R+
Sbjct: 504 --IIYNDNFKAEVYDTKKTGKKVFLHYVKVT------EGSLHVGDKVTIEVDELNRRDIM 555
Query: 117 RLHSAGHLLDVCMQKVGLGHLEPGKGYHFPDGPYVEYKGSVPQNELQSKTKELELEANAL 176
+ HSA HLL ++ V H+ Y DG + + + + + + +++E N
Sbjct: 556 KNHSATHLLHQALKDVVGDHVNQAGSY--VDGERLRFDITHFEAVSKEQLEKVEQIVNDK 613
Query: 177 ISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEII 236
I+ G V + + EE+ + L Q R+V++GD CGGTHV S+I
Sbjct: 614 IALGIPVKIDEMSLEESQSIGARGLFEDKYQ-DVVRVVQMGDYSIELCGGTHVKTTSDIQ 672
Query: 237 SMKV 240
+K+
Sbjct: 673 MLKI 676
>sp|A7HH87|SYA_ANADF Alanine--tRNA ligase OS=Anaeromyxobacter sp. (strain Fw109-5)
GN=alaS PE=3 SV=1
Length = 904
Score = 70.5 bits (171), Expect = 1e-11, Method: Composition-based stats.
Identities = 63/204 (30%), Positives = 91/204 (44%), Gaps = 13/204 (6%)
Query: 38 LILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSK-DGIVFHYGVVENSGGEFEME 96
++ +T F+ + GGQ D G I + V D R G+V H GVVE E E
Sbjct: 520 VVTAATPFYGESGGQVGDQGSIAAPGGRVR--VEDTRRPVPGLVTHVGVVE------EGE 571
Query: 97 LEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQKVGLGHLEPGKGYHFPDGPYVEYKGS 156
L G V L VD+ RR L HSA HLL + +++ H++ PD Y+ + S
Sbjct: 572 LAVGDLVELAVDDRRRDLIRANHSATHLLQLALRETLGDHVKQAGSIVAPD--YLRFDFS 629
Query: 157 VPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKL 216
Q + + +E N L+ + AVL E+A G + G R+V+L
Sbjct: 630 HFQPLSEEELNAIERRVNELVRENAETETAVLKLEDARQ-SGAMMIFGEKYGDVVRVVRL 688
Query: 217 GDNPGCPCGGTHVSDISEIISMKV 240
G + CGGTHV +I K+
Sbjct: 689 GPSKEL-CGGTHVRRTGDIAFFKI 711
>sp|B1L762|SYA_KORCO Alanine--tRNA ligase OS=Korarchaeum cryptofilum (strain OPF8)
GN=alaS PE=3 SV=1
Length = 895
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 116/266 (43%), Gaps = 45/266 (16%)
Query: 7 PTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDF 66
PTKL YY + L+ ++++ Y G +IL+ T F+P+GGGQPSD G F
Sbjct: 489 PTKLLYYQDPYLLEFEARVLGYVDG-----KMILDRTAFYPEGGGQPSDIG-------SF 536
Query: 67 KFIVHDVRSKDGIVFHYGVVENSGGEFEMELE-----KGKEVRLWVDESRRKLNSRLHSA 121
++ GI E GG +E G+ VR VD RR R H+A
Sbjct: 537 EW--------RGIEVKVVGAEKHGGWILHSVEGDLPPAGEVVRARVDSWRRLNRMRHHTA 588
Query: 122 GHLLDVCMQKVGLGHLE---PGKGYHFPDGPYVEYKGSVPQNELQSKTKELELEANALIS 178
H++ ++V H+ KG YKG + Q EL + +E+ AN ++
Sbjct: 589 THVILEAARRVLGSHVWQWGAQKGDEESRLDITHYKG-ISQEEL----RRIEMLANEVVM 643
Query: 179 RGGKVMVAVLPYEEA------SMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDI 232
R V L +A ++ GG +P + R+V++ CGGTHV
Sbjct: 644 RNIPVRTLWLVRTDAERRYGFTLYQGGVVPDPV-----LRVVEIEGFNAQACGGTHVLRT 698
Query: 233 SEIISMKVSQIR-TKKGTTKVFYSVG 257
EI +K+ + R + G ++ +S G
Sbjct: 699 GEIGPIKIWRARKIQDGVIRLEFSAG 724
>sp|Q46AR9|ALAXM_METBF Alanyl-tRNA editing protein AlaX-M OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=alaXM PE=1 SV=1
Length = 243
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 107/224 (47%), Gaps = 20/224 (8%)
Query: 38 LILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMEL 97
++L+ T+F+P+ GGQPSDTG ++ +F V VR +G + H E G L
Sbjct: 28 VVLDRTVFYPESGGQPSDTGKLVRESDGAEFNVLYVRKFNGDISH----EIDGENVSNGL 83
Query: 98 EKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQKVGLGHLEPGKGYHFPDGPYVEYKGSV 157
+ G +V+ ++D RR + R+H+A H++ ++K + G D V++ V
Sbjct: 84 KAGDKVKGFIDWDRRYRHMRMHTATHVIANVIEKEAGAQI-TGNQLGL-DQSRVDFSLEV 141
Query: 158 PQNELQSKTKELELEANALISRGGKVMVAVLPYEEA-------SMLCGGCLPHYIPQGST 210
+ K E E AN LI++ V + ++ +EA + L G + +
Sbjct: 142 FD---RDKFAEYEKIANDLIAQKSPVNLYLVSRKEAEEKLSRLTTLAKG----FSDEIKE 194
Query: 211 PRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRTKKGTTKVFY 254
RIV++ CGGTHV + EI +K+ +++ K + + Y
Sbjct: 195 VRIVEIEGVTIEACGGTHVKNTEEIKGVKIIKLQNKGKSNRRMY 238
>sp|Q9JYG6|SYA_NEIMB Alanine--tRNA ligase OS=Neisseria meningitidis serogroup B (strain
MC58) GN=alaS PE=3 SV=1
Length = 874
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 102/231 (44%), Gaps = 22/231 (9%)
Query: 20 QSTSKLISYFK----------GDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFI 69
Q+ SK+++ +K GD G A++++ T F+ + GGQ D G+I ++ +F
Sbjct: 462 QTESKVLALYKDGEQVNELNEGDSG--AVVIDFTPFYAESGGQVGDVGYIFSGEN--RFE 517
Query: 70 VHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCM 129
V D + VF V+ SG L+ G V VD+ R N R HSA HL+ +
Sbjct: 518 VRDTQKIKAAVFGQFGVQTSG-----RLKVGDSVTAKVDDEIRNANMRNHSATHLMHKAL 572
Query: 130 QKVGLGHLEPGKGYHFPDGPYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVAVLP 189
+ V H+E KG + S PQ + E+E N I V A++
Sbjct: 573 RDVLGRHVEQ-KG-SLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAIMS 630
Query: 190 YEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKV 240
E+A G + G R++++G CGGTHVS +I K+
Sbjct: 631 MEDAQK-TGAMMLFGEKYGEEVRVLQMGGFSTELCGGTHVSRTGDIGLFKI 680
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,423,370
Number of Sequences: 539616
Number of extensions: 4799811
Number of successful extensions: 12360
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 570
Number of HSP's that attempted gapping in prelim test: 10812
Number of HSP's gapped (non-prelim): 897
length of query: 258
length of database: 191,569,459
effective HSP length: 115
effective length of query: 143
effective length of database: 129,513,619
effective search space: 18520447517
effective search space used: 18520447517
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)