Query 025098
Match_columns 258
No_of_seqs 171 out of 1306
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 02:40:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025098.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025098hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02961 alanine-tRNA ligase 100.0 2E-59 4.2E-64 399.9 27.8 221 36-256 3-223 (223)
2 COG2872 Predicted metal-depend 100.0 3.7E-58 8E-63 390.4 23.4 230 7-258 1-236 (241)
3 TIGR03683 A-tRNA_syn_arch alan 100.0 1.8E-55 3.8E-60 434.9 27.2 234 4-258 497-736 (902)
4 PRK13902 alaS alanyl-tRNA synt 100.0 2.5E-55 5.5E-60 433.7 27.1 234 4-258 493-732 (900)
5 COG0013 AlaS Alanyl-tRNA synth 100.0 6.9E-53 1.5E-57 407.4 27.1 239 5-258 454-704 (879)
6 TIGR00344 alaS alanine--tRNA l 100.0 1.1E-52 2.3E-57 414.0 26.8 235 6-258 450-697 (851)
7 PRK00252 alaS alanyl-tRNA synt 100.0 2.6E-51 5.7E-56 405.6 26.6 233 7-258 444-690 (865)
8 PLN02900 alanyl-tRNA synthetas 100.0 5E-51 1.1E-55 403.5 27.1 237 6-258 486-737 (936)
9 KOG0188 Alanyl-tRNA synthetase 100.0 4E-42 8.6E-47 321.2 15.8 223 20-257 471-710 (895)
10 KOG2105 Predicted metal-depend 100.0 1E-36 2.3E-41 259.2 13.5 224 10-257 13-246 (415)
11 PRK01584 alanyl-tRNA synthetas 100.0 1E-27 2.2E-32 227.0 13.8 141 110-256 448-592 (594)
12 PLN02837 threonine-tRNA ligase 99.8 9.3E-21 2E-25 183.2 12.2 140 101-245 30-178 (614)
13 PRK12305 thrS threonyl-tRNA sy 99.8 1.5E-20 3.2E-25 181.2 13.0 136 115-257 7-157 (575)
14 PRK00413 thrS threonyl-tRNA sy 99.8 8.9E-20 1.9E-24 177.8 15.3 156 95-256 49-221 (638)
15 PRK12444 threonyl-tRNA synthet 99.8 3.8E-18 8.2E-23 166.2 14.8 155 96-256 54-225 (639)
16 PLN02908 threonyl-tRNA synthet 99.7 3.7E-17 8.1E-22 160.1 14.1 143 96-245 101-253 (686)
17 PF01411 tRNA-synt_2c: tRNA sy 99.7 3.1E-17 6.8E-22 156.5 8.4 93 8-111 452-552 (552)
18 TIGR00418 thrS threonyl-tRNA s 99.7 4.8E-16 1E-20 149.6 11.3 133 118-255 1-149 (563)
19 PF07973 tRNA_SAD: Threonyl an 99.6 2.6E-15 5.6E-20 95.3 4.8 43 211-253 1-44 (44)
20 COG0441 ThrS Threonyl-tRNA syn 99.6 1.2E-14 2.7E-19 138.2 10.9 124 112-245 24-151 (589)
21 smart00863 tRNA_SAD Threonyl a 99.4 1.5E-13 3.3E-18 87.3 4.1 43 211-253 1-44 (44)
22 KOG1637 Threonyl-tRNA syntheta 97.5 4.6E-05 1E-09 70.2 1.9 36 115-153 67-103 (560)
23 PRK14799 thrS threonyl-tRNA sy 96.9 0.0011 2.4E-08 63.8 5.0 42 213-255 70-117 (545)
24 COG1854 LuxS LuxS protein invo 71.7 11 0.00025 30.1 5.3 60 114-178 49-112 (161)
25 COG4014 Uncharacterized protei 71.7 6 0.00013 28.5 3.4 28 20-47 21-48 (97)
26 COG0307 RibC Riboflavin syntha 64.4 59 0.0013 27.4 8.4 86 20-114 101-188 (204)
27 PRK02260 S-ribosylhomocysteina 62.8 81 0.0017 25.5 9.7 60 113-177 48-111 (158)
28 PF02664 LuxS: S-Ribosylhomocy 37.7 61 0.0013 26.1 4.2 62 113-179 47-113 (157)
29 PF10750 DUF2536: Protein of u 36.8 28 0.00061 23.7 1.9 25 158-186 16-40 (68)
30 PF09871 DUF2098: Uncharacteri 33.6 56 0.0012 23.8 3.2 27 20-47 15-41 (91)
31 PRK15464 cold shock-like prote 27.8 1.7E+02 0.0038 20.0 4.7 34 78-114 29-62 (70)
32 PLN02741 riboflavin synthase 26.0 3.9E+02 0.0084 22.3 9.0 86 20-113 104-191 (194)
33 PRK10354 RNA chaperone/anti-te 24.4 2.3E+02 0.0051 19.1 5.3 33 78-113 29-61 (70)
34 PRK15463 cold shock-like prote 21.9 2.2E+02 0.0047 19.4 4.3 33 78-113 29-61 (70)
35 PRK09937 stationary phase/star 20.5 3E+02 0.0065 19.0 5.1 33 78-113 26-58 (74)
36 PRK09507 cspE cold shock prote 20.5 2.8E+02 0.0062 18.7 5.0 33 78-113 28-60 (69)
37 cd04089 eRF3_II eRF3_II: domai 20.2 3E+02 0.0066 18.9 5.3 10 95-104 24-33 (82)
No 1
>PLN02961 alanine-tRNA ligase
Probab=100.00 E-value=2e-59 Score=399.90 Aligned_cols=221 Identities=69% Similarity=1.167 Sum_probs=191.5
Q ss_pred EEEEEcCccccCCCCCCCCCeEEEEecCCCeEEEEEEEEEeCCEEEEEEEEecCCcccccccCCCCEEEEEEcchhhhhh
Q 025098 36 RALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLN 115 (258)
Q Consensus 36 ~~ivld~T~Fype~GGQ~~D~G~i~~~~~~~~~~V~~v~~~~~~i~H~~~~~~~~~~~~~~~~~g~~V~~~iD~~rR~~~ 115 (258)
++|+||+|+|||||||||+|+|+|...+++..|.|.+|++.+|.++|++.+..+..+...++.+|++|+++|||+||+.+
T Consensus 3 ~~viLd~T~FYpegGGQp~D~G~i~~~~~~~~~~V~~v~~~~g~i~H~~~~~~~~~~~~~~l~~G~~V~~~ID~~rR~~~ 82 (223)
T PLN02961 3 IALVLDRTIFHPQGGGQPSDTGRIVISGGDTKFSVQDVRRKDGVVYHYGVFEGSNPESASPFEAGDEVTVTVDESRRKLH 82 (223)
T ss_pred eEEEeCCceEcCCCCCCCCcEEEEEecCCCcEEEEEEEEEECCEEEEEEEecCcccccCCCCCCCCEEEEEECHHHHhhh
Confidence 68999999999999999999999987554456789999999999999976642111112467899999999999999999
Q ss_pred hhcccHHHHHHHHHHHhCCCcccCCccccCCCCceEeecCCCCHHHHhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhh
Q 025098 116 SRLHSAGHLLDVCMQKVGLGHLEPGKGYHFPDGPYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASM 195 (258)
Q Consensus 116 ~~~HTa~HlL~~al~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~ 195 (258)
|++|||+|||++||++++++....++|+++++++|++|...++.+++.+.+++||+++|++|++++||++.+++++||++
T Consensus 83 m~~HTa~HLL~~al~~~~~~~~~~~~g~~~~~~~~v~~~~~i~~~~~~~~~~~iE~~~N~~I~~~~~V~~~~~~~~ea~~ 162 (223)
T PLN02961 83 SRLHSAGHLLDVCMARVGLGPLEPGKGYHFPDGPFVEYKGKIPQGELDSKQDELEAEANELIAEGGKVSAAVLPYDEAAE 162 (223)
T ss_pred hccCcHHHHHHHHHHHcCCCccccccccccCCccceeecccCCHHHHHhHHHHHHHHHHHHHHcCCceeEEEeCHHHHHH
Confidence 99999999999999986443344567888888999999888998887555678999999999999999999999999998
Q ss_pred hcCCCCCCCCCCCCCcEEEEECCCCCcCccccccccccccccEEEEEEEEeCCEEEEEEEe
Q 025098 196 LCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRTKKGTTKVFYSV 256 (258)
Q Consensus 196 ~~~~~~~~~~~~~~~vRvv~ig~~~~~~CgGtHV~~T~eIg~~~I~~~~~~~~~~Ri~~~~ 256 (258)
+.+..+|.+.++++.+|+|+|++++.+|||||||.||++||.|+|+++++++|..||+|.+
T Consensus 163 ~~~~~~~~~~~~~~~vRiV~I~~~d~~~CgGTHv~nT~eig~i~I~~~~~~kg~~Rv~~~~ 223 (223)
T PLN02961 163 LCGGSLPDYIAKDSTPRIVKIGDSPGCPCGGTHVADVSEITSVKVTQIRVKKGVTRVSYTI 223 (223)
T ss_pred hcCCcCCCcCCCCCceEEEEECCCccCccCCcccCchhccccEEEEEEEecCCEEEEEEeC
Confidence 8655566666667789999999999999999999999999999999999889999999974
No 2
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]
Probab=100.00 E-value=3.7e-58 Score=390.38 Aligned_cols=230 Identities=33% Similarity=0.544 Sum_probs=194.9
Q ss_pred cceeceeccccceEeeeEEEEEEecCCCeEEEEEcCccccCCCCCCCCCeEEEEecCCCeEEEEEEEEEeCCEEEEEEEE
Q 025098 7 PTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVV 86 (258)
Q Consensus 7 ~t~~ly~~~~y~~~~~a~V~~v~~~~~~~~~ivld~T~Fype~GGQ~~D~G~i~~~~~~~~~~V~~v~~~~~~i~H~~~~ 86 (258)
||++||++|+|+.+++|+|+++.. ..|+||+|+|||+|||||+|+|+|.+.++.. .|.++.+.+..|+|++..
T Consensus 1 ~T~~ly~~D~y~~e~~~~v~~v~~-----~~i~ld~T~Fyp~~GGQp~D~G~l~~~~~~~--~~~~~~~~~~~I~H~~~~ 73 (241)
T COG2872 1 MTEKLYYDDSYLKEFEATVVDVED-----NEIVLDRTIFYPTGGGQPGDTGTLIWAGGEY--VVEDVTKDGEEIVHVLAE 73 (241)
T ss_pred CccceeccccccccceEEEEEEeC-----CeEEEEeccccCCCCCCcCCceEEEeCCceE--EEEEEEecceEEEEEecC
Confidence 699999999999999999999995 3899999999999999999999999986544 488888888899997421
Q ss_pred ecCCcccccccCCCCEEEEEEcchhhhhhhhcccHHHHHHHHHHHh-CCCcccCCccc-cCCCCceEeecCCCCHHHHhh
Q 025098 87 ENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQKV-GLGHLEPGKGY-HFPDGPYVEYKGSVPQNELQS 164 (258)
Q Consensus 87 ~~~~~~~~~~~~~g~~V~~~iD~~rR~~~~~~HTa~HlL~~al~~~-~~~~~~~~~g~-~~~~~~~~d~~~~~~~~~l~~ 164 (258)
. ..+++|++|.+.|||+|||++||+|||+|||++++.+. ++ +. .|+ ..++.+++||+...+++.+.+
T Consensus 74 ~-------~~~~vG~~V~~~IDW~rRy~~mr~HTa~Hlls~~~~~~~~~--~~--~g~~i~~d~~~iD~~~e~~~~~~~~ 142 (241)
T COG2872 74 H-------AKLKVGDKVKLKIDWERRYRHMRMHTALHLLSAVLYKVYGA--LT--TGFEIGEDYARIDFDGEDTEDEIEE 142 (241)
T ss_pred c-------ccCCCCCEEEEEECcHHHHHHHhhhHHHHHHHHHhhccccc--ee--ecceecccccccccccccchhhHHH
Confidence 1 35789999999999999999999999999999999875 32 22 344 446789999986666565554
Q ss_pred hHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCC-CCCCCCCC--CCCcEEEEECCCCCcCccccccccccccccEEEE
Q 025098 165 KTKELELEANALISRGGKVMVAVLPYEEASMLCGG-CLPHYIPQ--GSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVS 241 (258)
Q Consensus 165 ~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~-~~~~~~~~--~~~vRvv~ig~~~~~~CgGtHV~~T~eIg~~~I~ 241 (258)
+++++|+++++|+|+...+++++||.+.++. ++....++ .+.+|+|+|+|+|++|||||||+||+|||.|+|+
T Consensus 143 ----v~~~~ne~v~~~~~v~~~~i~~EE~~~~p~~~~~~~~~~~~~~g~iRiV~I~did~qpCgGtHVk~T~EIG~Iki~ 218 (241)
T COG2872 143 ----VEALANELVKENLPVIIYFIPREEAEKLPGLVKLKNKVPPDVEGKIRIVEIGDIDVQPCGGTHVKNTGEIGEIKIL 218 (241)
T ss_pred ----HHHHHHHHHHcCCeeeeeecCHHHHhhCcChhhhcccCCccccceEEEEEECCeeccCCCCcccCCccceEEEEEE
Confidence 9999999999999999999999999998763 22222222 3489999999999999999999999999999999
Q ss_pred EEEE-eCCEEEEEEEecC
Q 025098 242 QIRT-KKGTTKVFYSVGS 258 (258)
Q Consensus 242 ~~~~-~~~~~Ri~~~~~~ 258 (258)
+.++ +|+..||+|.+++
T Consensus 219 k~e~k~k~~~Rv~f~~~~ 236 (241)
T COG2872 219 KTEKKGKGNRRVYFTLGE 236 (241)
T ss_pred EEEEecCceEEEEEEecc
Confidence 9975 5689999999985
No 3
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=100.00 E-value=1.8e-55 Score=434.89 Aligned_cols=234 Identities=27% Similarity=0.438 Sum_probs=202.6
Q ss_pred CCCcceeceeccccceEeeeEEEEEEecCCCeEEEEEcCccccCCCCCCCCCeEEEEecCCCeEEEEEEEEEeCCEEEEE
Q 025098 4 EVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHY 83 (258)
Q Consensus 4 ~~~~t~~ly~~~~y~~~~~a~V~~v~~~~~~~~~ivld~T~Fype~GGQ~~D~G~i~~~~~~~~~~V~~v~~~~~~i~H~ 83 (258)
++++|+++||++||+++++|+|+++.. .+|+||+|+|||||||||+|+|+|..+++ .+.|.+|++.+|.++|+
T Consensus 497 ~~~~T~~l~y~~~~~~e~~a~Vl~i~~-----~~vvLd~T~FYpEgGGQ~~D~G~I~~~~~--~~~V~dv~k~~g~i~H~ 569 (902)
T TIGR03683 497 DLPETRRLFYEDPTMREFEAKVLGVFD-----NYVVLDQTAFYPEGGGQPADTGYLITNGG--KIRVVDVQKVGGVIVHK 569 (902)
T ss_pred cCCCceEeccccCccceEEEEEEEEEc-----CEEEEeCCCCCCCCCCCCCCEEEEEeCCc--EEEEEEEEEECCEEEEE
Confidence 468899999999999999999999984 58999999999999999999999987643 36699999999999997
Q ss_pred EEEecCCcccccccCCCCEEEEEEcchhhhhhhhcccHHHHHHHHHHHh-CCCcccCCccccC-CCCceEeec--CCCCH
Q 025098 84 GVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQKV-GLGHLEPGKGYHF-PDGPYVEYK--GSVPQ 159 (258)
Q Consensus 84 ~~~~~~~~~~~~~~~~g~~V~~~iD~~rR~~~~~~HTa~HlL~~al~~~-~~~~~~~~~g~~~-~~~~~~d~~--~~~~~ 159 (258)
+. .+.+.+|++|++.|||+||+++|++|||+|||++|++++ |. ++. +.|+++ ++.+++||. ..+++
T Consensus 570 ~~--------~~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~~alr~vlG~-~v~-q~Gs~v~~d~~r~Df~~~~~lt~ 639 (902)
T TIGR03683 570 VD--------GEGIKEGDEVKGEIDWERRLRLMRHHTATHVLLAAARRVLGR-HVW-QAGAQKDTDKARLDITHYKRISE 639 (902)
T ss_pred eC--------CCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCC-cee-ecCccccCCcEEEEEeCCCCCCH
Confidence 52 123789999999999999999999999999999999986 43 443 345554 678999986 57999
Q ss_pred HHHhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCCC-CCCCCCCCCcEEEEECCCCCcCccccccccccccccE
Q 025098 160 NELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCL-PHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISM 238 (258)
Q Consensus 160 ~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~-~~~~~~~~~vRvv~ig~~~~~~CgGtHV~~T~eIg~~ 238 (258)
+++.+ ||+.+|++|++++||++.+++++||++..+..+ +...++++.||||+|+++|.++||||||.|||+||.|
T Consensus 640 eel~~----IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~~~l~~~~~~~~~~VRVV~Ig~~d~e~CgGTHV~nTgeIG~~ 715 (902)
T TIGR03683 640 EEIKE----IERLANRIVMENRPVSVKWMDRNEAEQKYGFRLYQGGVPPGREIRVVEIEDWDVQACGGTHCRNTGEIGPI 715 (902)
T ss_pred HHHHH----HHHHHHHHHHhCCCeEEEEeCHHHHHhcCchhhhccCCCCCCeEEEEEECCeeeeCCCCCCccchhcCceE
Confidence 98887 999999999999999999999999998754332 2234567889999999999999999999999999999
Q ss_pred EEEEEEE-eCCEEEEEEEecC
Q 025098 239 KVSQIRT-KKGTTKVFYSVGS 258 (258)
Q Consensus 239 ~I~~~~~-~~~~~Ri~~~~~~ 258 (258)
+|++.++ ++|..||+|++|+
T Consensus 716 kI~~~~~i~~Gv~RIe~v~G~ 736 (902)
T TIGR03683 716 KILKTERIQDGVERIEFAAGE 736 (902)
T ss_pred EEEEEEEecCCeEEEEEEECh
Confidence 9999986 6789999999984
No 4
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.5e-55 Score=433.72 Aligned_cols=234 Identities=30% Similarity=0.450 Sum_probs=201.8
Q ss_pred CCCcceeceeccccceEeeeEEEEEEecCCCeEEEEEcCccccCCCCCCCCCeEEEEecCCCeEEEEEEEEEeCCEEEEE
Q 025098 4 EVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHY 83 (258)
Q Consensus 4 ~~~~t~~ly~~~~y~~~~~a~V~~v~~~~~~~~~ivld~T~Fype~GGQ~~D~G~i~~~~~~~~~~V~~v~~~~~~i~H~ 83 (258)
++++|+++||++||+++++|+|+++.. .+|+||+|+|||||||||+|+|+|..++. .+.|.+|++.+|.++|+
T Consensus 493 ~~~~T~~l~y~~~~~~~~~a~Vl~i~~-----~~vvLD~T~FYpEgGGQ~~D~G~I~~~~~--~~~V~dv~k~~g~i~H~ 565 (900)
T PRK13902 493 DLPETEKLFYEDPYMREFEAKVLGVID-----NYVVLDQTAFYPEGGGQPADTGVLIVDGK--GYKVVDVQKVGGVIVHV 565 (900)
T ss_pred cCCCceEeccccCccceEEEEEEEEEc-----CEEEEeCCCCCCCCCCCCCCEEEEEeCCc--EEEEEEEEEECCEEEEE
Confidence 467899999999999999999999984 48999999999999999999999987543 46699999999999997
Q ss_pred EEEecCCcccccccCCCCEEEEEEcchhhhhhhhcccHHHHHHHHHHHh-CCCcccCCccccC-CCCceEeec--CCCCH
Q 025098 84 GVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQKV-GLGHLEPGKGYHF-PDGPYVEYK--GSVPQ 159 (258)
Q Consensus 84 ~~~~~~~~~~~~~~~~g~~V~~~iD~~rR~~~~~~HTa~HlL~~al~~~-~~~~~~~~~g~~~-~~~~~~d~~--~~~~~ 159 (258)
+ . .+.+.+|++|++.|||+||+++|++|||+|||++|++++ |. ++. +.|+++ ++.+++||. ..+++
T Consensus 566 ~--~------~~~~~~G~~V~~~VD~~rR~~~mr~HTAtHLL~~al~~vlG~-~v~-q~Gs~v~~d~~r~Df~~~~~lt~ 635 (900)
T PRK13902 566 L--E------GEPPKKGDEVRGEIDWERRYRLMRHHTATHIILAAARKVLGD-HVW-QAGAQKTVDKARLDITHYKRITR 635 (900)
T ss_pred e--C------CCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCC-cee-ecCccccCCCEEEEEeCCCCCCH
Confidence 5 2 123346999999999999999999999999999999986 43 333 245544 678999986 57999
Q ss_pred HHHhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCCC-CCCCCCCCCcEEEEECCCCCcCccccccccccccccE
Q 025098 160 NELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCL-PHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISM 238 (258)
Q Consensus 160 ~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~-~~~~~~~~~vRvv~ig~~~~~~CgGtHV~~T~eIg~~ 238 (258)
+++.+ ||+.+|++|++++||++.+++++||++..+..+ +...++++.||||+|+++|.++||||||.|||+||.|
T Consensus 636 eel~~----IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~~~l~~~g~~~~~~VRVV~Ig~~d~e~CgGTHV~nTgeIG~~ 711 (900)
T PRK13902 636 EEVKE----IERLANEIVMENRPVKVEWMDRNEAEQKYGFRLYQGGVPPGKTIRVVEIGDWDVEACGGTHVSNTGEIGPI 711 (900)
T ss_pred HHHHH----HHHHHHHHHHcCCCEEEEecCHHHHHhccchhhhccCCCCCCeEEEEEECCeeeeCCCCCCcCcHhhCeeE
Confidence 98887 999999999999999999999999998764332 2334667889999999999999999999999999999
Q ss_pred EEEEEEE-eCCEEEEEEEecC
Q 025098 239 KVSQIRT-KKGTTKVFYSVGS 258 (258)
Q Consensus 239 ~I~~~~~-~~~~~Ri~~~~~~ 258 (258)
+|++.++ ++|..||+|.+|.
T Consensus 712 kI~~~e~i~~Gv~RIe~v~G~ 732 (900)
T PRK13902 712 KILKTERIQDGVERLEFAAGD 732 (900)
T ss_pred EEEEEEEecCCeEEEEEEECh
Confidence 9999986 6788999999984
No 5
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.9e-53 Score=407.36 Aligned_cols=239 Identities=29% Similarity=0.371 Sum_probs=202.0
Q ss_pred CCcceeceeccccceEeeeEEEEEEec------CCCeEEEEEcCccccCCCCCCCCCeEEEEecCCCeEEEEEEEEEeC-
Q 025098 5 VIPTKLDYYDNMLKLQSTSKLISYFKG------DDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKD- 77 (258)
Q Consensus 5 ~~~t~~ly~~~~y~~~~~a~V~~v~~~------~~~~~~ivld~T~Fype~GGQ~~D~G~i~~~~~~~~~~V~~v~~~~- 77 (258)
.++|+.+||++++.. +++.++..... +++..+||||+||||||||||++|+|+|..++ +..|.|.||++.+
T Consensus 454 ~~~tef~gY~~~~~~-~~i~~l~~~~~~v~~~~~g~~~~vVld~TpFYaEsGGQ~~D~G~i~~~~-~~~~~V~dvqK~~~ 531 (879)
T COG0013 454 LPETEFLGYDDLEME-FKVLVLFVDGKEVSELNEGQEVYVVLDQTPFYAESGGQVGDTGYIFGDG-GGRFEVTDVQKVGN 531 (879)
T ss_pred CCCceeeecccccce-EEEEEEEecCcccccccCCceEEEEEecCCccCCCCCccCceEEEEecC-CcEEEEEEEEEcCC
Confidence 578999999997766 55555443321 24568999999999999999999999999875 4578899999987
Q ss_pred CEEEEEEEEecCCcccccccCCCCEEEEEEcchhhhhhhhcccHHHHHHHHHHHhCCCcccCCcccc-CCCCceEeec--
Q 025098 78 GIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQKVGLGHLEPGKGYH-FPDGPYVEYK-- 154 (258)
Q Consensus 78 ~~i~H~~~~~~~~~~~~~~~~~g~~V~~~iD~~rR~~~~~~HTa~HlL~~al~~~~~~~~~~~~g~~-~~~~~~~d~~-- 154 (258)
+.++|.+.+. .+.+++|+.|.+.|||+||+++|++|||+|||++||+++..+++.+ .|+. .++..++||+
T Consensus 532 ~~~vH~~~~~------~G~l~~gd~V~~~vD~~rR~~~~~nHTATHLLh~ALr~VLG~hV~Q-aGSlv~~~~lRfDfsH~ 604 (879)
T COG0013 532 GVIVHKGKVE------SGELKVGDEVTAEVDEERRRRLMRNHTATHLLHAALRKVLGDHVWQ-AGSLVDPEKLRFDFSHY 604 (879)
T ss_pred ceEEEEEeec------cCccCCCCEEEEEECHHHHHHHHhhChHHHHHHHHHHHHhCcccee-cCcccCCCeeEEeecCC
Confidence 8999998665 3579999999999999999999999999999999999974556654 5554 4667899985
Q ss_pred CCCCHHHHhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCC-CCCCCCCCCCCcEEEEECCCCCcCcccccccccc
Q 025098 155 GSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGG-CLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDIS 233 (258)
Q Consensus 155 ~~~~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~-~~~~~~~~~~~vRvv~ig~~~~~~CgGtHV~~T~ 233 (258)
+.+|.++|.+ ||+.+|++|++|.||.+.++++++|++. |- +|... ++++.||||+||++|.++||||||.|||
T Consensus 605 ~~it~Eel~~----IE~~vNe~I~~n~~V~~~~m~~~eAk~~-Ga~alfGe-kY~~~VRVV~ig~~SvElCGGTHv~~Tg 678 (879)
T COG0013 605 KALTAEELKE----IERLVNEIIRENLPVKTEEMDLDEAKAK-GAMALFGE-KYGDEVRVVEIGDFSVELCGGTHVSNTG 678 (879)
T ss_pred CCCCHHHHHH----HHHHHHHHHHcCCceeEEEccHHHHHHh-ChHhhcCC-cCCCeEEEEEECCceeeccCCcccCCcc
Confidence 6899999987 9999999999999999999999999987 31 23332 2336899999999999999999999999
Q ss_pred ccccEEEEEEEE-eCCEEEEEEEecC
Q 025098 234 EIISMKVSQIRT-KKGTTKVFYSVGS 258 (258)
Q Consensus 234 eIg~~~I~~~~~-~~~~~Ri~~~~~~ 258 (258)
+||.|+|++.+. ..|+.||++++|.
T Consensus 679 ~IG~fkI~~e~~i~aGVrRIeavtG~ 704 (879)
T COG0013 679 DIGLFKIISEEGIAAGVRRIEAVTGE 704 (879)
T ss_pred ceeeEEEEEecccccCeEEEEEEcCH
Confidence 999999999985 6799999999873
No 6
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=100.00 E-value=1.1e-52 Score=414.01 Aligned_cols=235 Identities=32% Similarity=0.421 Sum_probs=199.0
Q ss_pred CcceeceeccccceEeeeEEEEEEe--------cCCCeEEEEEcCccccCCCCCCCCCeEEEEecCCCeEEEEEEEEEeC
Q 025098 6 IPTKLDYYDNMLKLQSTSKLISYFK--------GDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKD 77 (258)
Q Consensus 6 ~~t~~ly~~~~y~~~~~a~V~~v~~--------~~~~~~~ivld~T~Fype~GGQ~~D~G~i~~~~~~~~~~V~~v~~~~ 77 (258)
++|+++||++ .+++|+|+++.. ..++..+|+||+|+|||||||||+|+|+|..+ +..+.|.+|++.+
T Consensus 450 ~~t~~l~Y~~---~~~~a~V~~i~~~~~~v~~~~~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~~--~~~~~V~dv~~~~ 524 (851)
T TIGR00344 450 PATEFLGYED---LEFEAKVIGLFEDGKPVDEAEAGQSVYVILDQTPFYAESGGQIGDTGYLIAN--DGKFRVVDVQKPN 524 (851)
T ss_pred CCccccceec---ccccEEEEEEEeCCccceecccCCceEEEEeCCCCCCCCCCCCCCEEEEecC--CcEEEEEEEEEEC
Confidence 6789999998 788999999984 12446899999999999999999999999854 3346799999999
Q ss_pred CEEEEEEEEecCCcccccccCCCCEEEEEEcchhhhhhhhcccHHHHHHHHHHHh-CCCcccCCcccc-CCCCceEeec-
Q 025098 78 GIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQKV-GLGHLEPGKGYH-FPDGPYVEYK- 154 (258)
Q Consensus 78 ~~i~H~~~~~~~~~~~~~~~~~g~~V~~~iD~~rR~~~~~~HTa~HlL~~al~~~-~~~~~~~~~g~~-~~~~~~~d~~- 154 (258)
|.++|++.+. .+++.+|++|++.|||+||+.+|++|||+|||++||+++ |. ++.+ .|++ .++.+|+||.
T Consensus 525 g~i~H~~~~~------~g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aAL~~vlg~-~v~q-~Gs~v~~d~~r~Df~~ 596 (851)
T TIGR00344 525 GVVFHFGEVE------GGSLKVGDKVIAVIDEKRRLRIMRNHSATHLLHAALQKVLGN-HVWQ-AGSLVSVKKLRFDFSH 596 (851)
T ss_pred CEEEEEEEec------cCCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceEe-ccCcccCCcEEEEecC
Confidence 9999987654 236789999999999999999999999999999999986 43 3332 4554 4778999996
Q ss_pred -CCCCHHHHhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCCCCCCCCCCCCcEEEEECCCCCcCcccccccccc
Q 025098 155 -GSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDIS 233 (258)
Q Consensus 155 -~~~~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~~~~~~~~~~vRvv~ig~~~~~~CgGtHV~~T~ 233 (258)
..++++++.+ ||++||++|++++||.+.+++++||++.+...+... ++++.||||+||++|.+|||||||.||+
T Consensus 597 ~~~lt~eel~~----IE~~vNelI~~n~pV~~~~~~~eeA~~~~~~~~~~e-~y~~~VRVV~Ig~~d~e~CgGTHV~nTg 671 (851)
T TIGR00344 597 YRALTREELEK----IEDLVNEQILANIPIKVIFMDLDEAKAKGAFALFGE-KYGEKVRVVSVGDVSVELCGGTHVRNTG 671 (851)
T ss_pred CCCCCHHHHHH----HHHHHHHHHHhCCceEEEEeCHHHHHhcchhhhcCC-CCCCeEEEEEECCeeccCCCCCccCChh
Confidence 4799998887 999999999999999999999999998754322111 2256899999999999999999999999
Q ss_pred ccccEEEEEEEE-eCCEEEEEEEecC
Q 025098 234 EIISMKVSQIRT-KKGTTKVFYSVGS 258 (258)
Q Consensus 234 eIg~~~I~~~~~-~~~~~Ri~~~~~~ 258 (258)
+||.|+|++.++ ++|..||+|++|+
T Consensus 672 eIg~~kI~~~~~~~~G~~RIe~v~G~ 697 (851)
T TIGR00344 672 EIGLFKIVKESGIAAGVRRIEAVTGN 697 (851)
T ss_pred hCeEEEEEEEeEecCCeEEEEEEEcH
Confidence 999999999985 6688999999984
No 7
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.6e-51 Score=405.62 Aligned_cols=233 Identities=32% Similarity=0.436 Sum_probs=194.8
Q ss_pred cceeceeccccceEeeeEEEEEEec--------CCCeEEEEEcCccccCCCCCCCCCeEEEEecCCCeEEEEEEEEEe-C
Q 025098 7 PTKLDYYDNMLKLQSTSKLISYFKG--------DDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSK-D 77 (258)
Q Consensus 7 ~t~~ly~~~~y~~~~~a~V~~v~~~--------~~~~~~ivld~T~Fype~GGQ~~D~G~i~~~~~~~~~~V~~v~~~-~ 77 (258)
+|+.+||++ .+++|+|+++... .++.++|+||+|+|||||||||+|+|+|.. + ..|.|.+|++. +
T Consensus 444 ~t~f~~Y~~---~~~~a~v~~i~~~~~~~~~~~~g~~~~vvLd~T~FYpegGGQ~~D~G~I~~-~--~~~~V~~v~~~~~ 517 (865)
T PRK00252 444 ATEFVGYDT---LEAEAKVLALFVDGESVDSAKAGEEVEVVLDKTPFYAESGGQVGDTGVIED-G--GVFEVTDTQKPPN 517 (865)
T ss_pred CCeeeeeee---ccccEEEEEEEeCCceeeeccCCCeEEEEEeCCCCCCCCCCCCCCEEEEee-C--cEEEEEEEEEccC
Confidence 578888876 5789999999841 244589999999999999999999999986 3 24669999997 9
Q ss_pred CEEEEEEEEecCCcccccccCCCCEEEEEEcchhhhhhhhcccHHHHHHHHHHHh-CCCcccCCccccC-CCCceEeec-
Q 025098 78 GIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQKV-GLGHLEPGKGYHF-PDGPYVEYK- 154 (258)
Q Consensus 78 ~~i~H~~~~~~~~~~~~~~~~~g~~V~~~iD~~rR~~~~~~HTa~HlL~~al~~~-~~~~~~~~~g~~~-~~~~~~d~~- 154 (258)
|.++|++.+. .+++.+|++|++.|||+||+.+|++|||+|||++|++++ |. ++.+ .|++. ++++++||.
T Consensus 518 g~i~H~~~~~------~~~l~~G~~V~~~ID~~rR~~~m~~HTa~HLL~~al~~~lg~-~v~q-~Gs~~~~~~~r~Df~~ 589 (865)
T PRK00252 518 GLIVHRGKVE------EGELKVGDEVTAEVDEERRRAIARNHSATHLLHAALREVLGE-HVTQ-AGSLVAPDRLRFDFSH 589 (865)
T ss_pred CEEEEEEEec------cCCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhhh-heEe-ccCcccCCeEEEEeec
Confidence 9999987543 245789999999999999999999999999999999886 43 3332 44444 678999985
Q ss_pred -CCCCHHHHhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCCCCCCCCCCCCcEEEEECCCCCcCcccccccccc
Q 025098 155 -GSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDIS 233 (258)
Q Consensus 155 -~~~~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~~~~~~~~~~vRvv~ig~~~~~~CgGtHV~~T~ 233 (258)
..++++++.+ ||++||++|++++||.+.+++++||.+.....+.+. ++++.||||+||+++.+|||||||+||+
T Consensus 590 ~~~lt~eel~~----IE~~vN~lI~~n~pV~~~~~~~~eA~~~~~~~~~~~-~y~~~VRVV~Ig~~d~~~CgGTHV~nTg 664 (865)
T PRK00252 590 FEALTPEELRK----IEDLVNEKIRENLPVETEEMSIEEAKKMGAMALFGE-KYGDEVRVVSIGDFSIELCGGTHVSNTG 664 (865)
T ss_pred CCCCCHHHHHH----HHHHHHHHHHhCCCeEEEEeCHHHHHhCCchhhccc-cCCCeEEEEEECCceeeCCCCCccCCcc
Confidence 5799998887 999999999999999999999999998532222111 2367899999999999999999999999
Q ss_pred ccccEEEEEEEE-eCCEEEEEEEecC
Q 025098 234 EIISMKVSQIRT-KKGTTKVFYSVGS 258 (258)
Q Consensus 234 eIg~~~I~~~~~-~~~~~Ri~~~~~~ 258 (258)
+||.|+|++.++ ++|..||+|++|.
T Consensus 665 eIg~~kI~~~~~~~~g~~RI~~v~G~ 690 (865)
T PRK00252 665 DIGLFKIVSESGVAAGVRRIEAVTGE 690 (865)
T ss_pred cCeEEEEEEEeeecCCeEEEEEEECH
Confidence 999999999986 5688899999984
No 8
>PLN02900 alanyl-tRNA synthetase
Probab=100.00 E-value=5e-51 Score=403.53 Aligned_cols=237 Identities=26% Similarity=0.360 Sum_probs=196.6
Q ss_pred CcceeceeccccceEeeeEEEEEEec--------CCCeEEEEEcCccccCCCCCCCCCeEEEEecCCCeEEEEEEEEEeC
Q 025098 6 IPTKLDYYDNMLKLQSTSKLISYFKG--------DDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKD 77 (258)
Q Consensus 6 ~~t~~ly~~~~y~~~~~a~V~~v~~~--------~~~~~~ivld~T~Fype~GGQ~~D~G~i~~~~~~~~~~V~~v~~~~ 77 (258)
++|+.++|+.. .+++|+|+++... .++.++|+||+|+|||||||||+|+|+|.+.++ ..|.|.+|++.+
T Consensus 486 ~~t~f~gY~~~--~~~~~~v~~i~~~~~~v~~~~~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~~~~-~~~~V~dv~k~~ 562 (936)
T PLN02900 486 ATDDFLKYDWL--SDHEAVVKAILTGGGFVESVSEGDEVGIVLDKTSFYAESGGQIGDTGVLEGSGG-AVVEVSDVQKAG 562 (936)
T ss_pred CCCcccccccC--CccceEEEEEEECCceeeeccCCCeEEEEEeCCCCCCCCCCCCCCEEEEecCCC-CEEEEEEEEEEC
Confidence 56888998874 2278999999741 234689999999999999999999999986542 146799999999
Q ss_pred CEEEEEEEEecCCcccccccCCCCEEEEEEcchhhhhhhhcccHHHHHHHHHHHh-CCCcccCCccccC-CCCceEeec-
Q 025098 78 GIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQKV-GLGHLEPGKGYHF-PDGPYVEYK- 154 (258)
Q Consensus 78 ~~i~H~~~~~~~~~~~~~~~~~g~~V~~~iD~~rR~~~~~~HTa~HlL~~al~~~-~~~~~~~~~g~~~-~~~~~~d~~- 154 (258)
|.++|++.+. .+++.+|++|++.|||+||+.+|++|||+|||++|++++ |. ++. +.|+++ ++.+++||.
T Consensus 563 g~i~H~~~~~------~g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlG~-~v~-q~Gs~v~~d~~r~Df~~ 634 (936)
T PLN02900 563 GFVLHIGTVT------EGSVSVGDAVTCKVDYDRRRRIAPNHTATHLLNSALKEVLGD-HVD-QKGSLVAFEKLRFDFSH 634 (936)
T ss_pred CEEEEEEEec------cCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHcCC-cEE-eccccccCCeEEEEeeC
Confidence 9999987554 246789999999999999999999999999999999886 43 332 356655 678999985
Q ss_pred -CCCCHHHHhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCC-CCCCCCCCCCCcEEEEECCC-CCcCcccccccc
Q 025098 155 -GSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGG-CLPHYIPQGSTPRIVKLGDN-PGCPCGGTHVSD 231 (258)
Q Consensus 155 -~~~~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~-~~~~~~~~~~~vRvv~ig~~-~~~~CgGtHV~~ 231 (258)
..++++++.+ ||++||++|++++||++.+++++||.+..+. ++... ++.+.||||+|+++ |.++||||||.|
T Consensus 635 ~~~lt~eel~~----IE~~vNe~I~~n~pV~~~~~~~eEA~~~~g~~~~f~e-~y~~~VRVV~Ig~~~d~elCGGTHV~n 709 (936)
T PLN02900 635 GKPMTPEELRE----VESLVNEWIGDALPVEAKEMPLADAKRINGLRAVFGE-KYPDPVRVVSVGGVYSMELCGGTHVSN 709 (936)
T ss_pred CCCCCHHHHHH----HHHHHHHHHHhCCCeEEEEcCHHHHhhccChHhhcCC-CCCCcEEEEEECCccceeCCCCCcCCc
Confidence 6799999887 9999999999999999999999999985431 11111 12458999999998 999999999999
Q ss_pred ccccccEEEEEEEE-eCCEEEEEEEecC
Q 025098 232 ISEIISMKVSQIRT-KKGTTKVFYSVGS 258 (258)
Q Consensus 232 T~eIg~~~I~~~~~-~~~~~Ri~~~~~~ 258 (258)
|++||.|+|++.++ ++|..||+|++|.
T Consensus 710 TgeIG~fkIls~~~~~~G~rRIe~v~G~ 737 (936)
T PLN02900 710 TAEAEAFKLLSEEGIAKGIRRITAVTGG 737 (936)
T ss_pred cccCceEEEEEEeeecCCeEEEEEEEcH
Confidence 99999999999885 6688899999984
No 9
>KOG0188 consensus Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4e-42 Score=321.20 Aligned_cols=223 Identities=29% Similarity=0.474 Sum_probs=189.6
Q ss_pred EeeeEEEEEEe--------cCCCeEEEEEcCccccCCCCCCCCCeEEEEecC-CCeEEEEEEEEEeCCEEEEEEEEecCC
Q 025098 20 QSTSKLISYFK--------GDDGRRALILESTIFHPQGGGQPSDTGFIIVAD-SDFKFIVHDVRSKDGIVFHYGVVENSG 90 (258)
Q Consensus 20 ~~~a~V~~v~~--------~~~~~~~ivld~T~Fype~GGQ~~D~G~i~~~~-~~~~~~V~~v~~~~~~i~H~~~~~~~~ 90 (258)
.++++|+++.. ..+++++|+||+|+||+|+|||.+|+|.|...+ ....|.|..++. +|+++|++.+.
T Consensus 471 ~~~~~il~l~~e~~~v~~~~~g~~~givldktnFYaEqGGQ~~D~G~lv~~~~~~~~fnV~~~~~-gg~vvh~g~l~--- 546 (895)
T KOG0188|consen 471 VCKTRILALYREDQFVESIPKGQECGIVLDKTNFYAEQGGQIYDTGKLVIDGDEDFVFNVKRVQV-GGYVVHIGVLE--- 546 (895)
T ss_pred cchhhhhhhhcCCceeeecCCCceEEEEeecceeehhcCCcccccceEEEecCccceeehhhccc-CCEEEEEeeec---
Confidence 66788888764 346789999999999999999999999999875 344567777776 89999998764
Q ss_pred cccccccCCCCEEEEEEcchhhhhhhhcccHHHHHHHHHHHhCCCcccCCccccC-CCCceEeec--CCCCHHHHhhhHH
Q 025098 91 GEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQKVGLGHLEPGKGYHF-PDGPYVEYK--GSVPQNELQSKTK 167 (258)
Q Consensus 91 ~~~~~~~~~g~~V~~~iD~~rR~~~~~~HTa~HlL~~al~~~~~~~~~~~~g~~~-~~~~~~d~~--~~~~~~~l~~~~~ 167 (258)
+.+.+|++|++.+|.+||+.+|++|||+|||++||+++.. -+.++|+.. ++..++||. ..++.+++..
T Consensus 547 ----~~l~vgdqv~~~~De~rR~~im~nHTaTHlLN~aLr~~l~--~t~QkGSlV~pdklRfDf~~k~~lt~eql~~--- 617 (895)
T KOG0188|consen 547 ----GDLSVGDQVELHVDEERRQLIMRNHTATHLLNFALRQVLK--GTDQKGSLVAPDKLRFDFSTKGALTKEQLKK--- 617 (895)
T ss_pred ----cccccchhHHHHhhHHHHHHHhhcchHHHHHHHHHHHhcc--cccccccccChhHeeeecccCCCCCHHHHHH---
Confidence 5789999999999999999999999999999999999752 234577766 678899985 4599999887
Q ss_pred HHHHHHHHHHHcCCceEEEEcCHHHHhhhcCC-CCCCCCCCCCCcEEEEECC---CCCcCccccccccccccccEEEEEE
Q 025098 168 ELELEANALISRGGKVMVAVLPYEEASMLCGG-CLPHYIPQGSTPRIVKLGD---NPGCPCGGTHVSDISEIISMKVSQI 243 (258)
Q Consensus 168 ~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~-~~~~~~~~~~~vRvv~ig~---~~~~~CgGtHV~~T~eIg~~~I~~~ 243 (258)
+|+.||++|.++.+|+..++++++|++..+. ..++..+| +.||||.+|. .++++|||||+.|||+||.|.|.+-
T Consensus 618 -vE~~~ne~I~~~~~V~~~e~~l~~ak~i~glr~v~~E~YP-dpVRVVsvg~~~~~svE~CgGTH~~~t~~i~~fvI~se 695 (895)
T KOG0188|consen 618 -VEDKINEFIQKNAPVYAKELPLAEAKKIPGLRAVFDEVYP-DPVRVVSVGAGQLTSVEFCGGTHLTNTSHIGDFVIVSE 695 (895)
T ss_pred -HHHHHHHHHhcCCceEEEecCHHHHhcCCCcccccCCccC-CceEEEEeccccccceeecCCcccccccccceEEEech
Confidence 9999999999999999999999999998763 33444444 6899999985 6789999999999999999999998
Q ss_pred E-EeCCEEEEEEEec
Q 025098 244 R-TKKGTTKVFYSVG 257 (258)
Q Consensus 244 ~-~~~~~~Ri~~~~~ 257 (258)
+ ..+|..||--..|
T Consensus 696 ~~iakgirRivavTG 710 (895)
T KOG0188|consen 696 EGIAKGIRRIVAVTG 710 (895)
T ss_pred hhhhhceeEEEEecc
Confidence 7 4789999987765
No 10
>KOG2105 consensus Predicted metal-dependent hydrolase, contains AlaS domain [General function prediction only]
Probab=100.00 E-value=1e-36 Score=259.23 Aligned_cols=224 Identities=26% Similarity=0.358 Sum_probs=170.1
Q ss_pred eceeccccceEeeeEEEEEEecCC-----CeEEEEEcCccccCCCCCCCCCeEEEEecCCCeEEEEEEEEEeCCEEEEEE
Q 025098 10 LDYYDNMLKLQSTSKLISYFKGDD-----GRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYG 84 (258)
Q Consensus 10 ~ly~~~~y~~~~~a~V~~v~~~~~-----~~~~ivld~T~Fype~GGQ~~D~G~i~~~~~~~~~~V~~v~~~~~~i~H~~ 84 (258)
+.++.+++++.|++.|+++.+.++ ..+.+.|.+|++||+|||||+|.|++.+ +. |..|.+.+-..-|.
T Consensus 13 ~~~~~~~~~~dfkt~vvsc~p~~~kk~eieg~~i~lqdtiLfpegggqp~d~gf~~~----v~--V~~VsR~G~~A~H~- 85 (415)
T KOG2105|consen 13 LACQRNSFLFDFKTLVVSCEPTKNKKGEIEGYEIELQDTILFPEGGGQPSDSGFLKI----VE--VSHVSRFGLHAKHH- 85 (415)
T ss_pred cccchhhhhhhccccccccccccCCcceeecceeeeeeeEeccCCCCCCCccccccc----ee--EEEeeccccchhhc-
Confidence 467788999999999999986332 3489999999999999999999999974 33 88888887777774
Q ss_pred EEecCCcccccccCCCCEEEEEEcchhhhhhhhcccHHHHHHHHHHHh-CCCcccCCccccCCCCceEee-cCCCCHHHH
Q 025098 85 VVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQKV-GLGHLEPGKGYHFPDGPYVEY-KGSVPQNEL 162 (258)
Q Consensus 85 ~~~~~~~~~~~~~~~g~~V~~~iD~~rR~~~~~~HTa~HlL~~al~~~-~~~~~~~~~g~~~~~~~~~d~-~~~~~~~~l 162 (258)
+ ..++.||.+|++.|||++|.++|+.||++||+++++.++ .....+|..|... +.++. ..+++.+++
T Consensus 86 -~-------~~~iePGt~V~V~VD~qkR~D~MQQHsGQHLitAvad~~fKlkTtSWelG~~~---sa~e~~~~~mTaeqv 154 (415)
T KOG2105|consen 86 -V-------NDYIEPGTTVEVAVDEQKRMDYMQQHSGQHLITAVADHLFKLKTTSWELGRFR---SAIELDTPSMTAEQV 154 (415)
T ss_pred -c-------CCCCCCCCeEEEEecHHHHhHHHHHhcchhHHHHHHHhhhccceeeeecccee---eccccCCCCccHHHH
Confidence 2 357899999999999999999999999999999999875 2222222223211 11222 235788887
Q ss_pred hhhHHHHHHHHHHHHHcCCceEEEEcCHHH--HhhhcCCCCCCCCCCCCCcEEEEECCCCCcCccccccccccccccEEE
Q 025098 163 QSKTKELELEANALISRGGKVMVAVLPYEE--ASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKV 240 (258)
Q Consensus 163 ~~~~~~IE~~~n~~I~~~~~v~~~~~~~~e--a~~~~~~~~~~~~~~~~~vRvv~ig~~~~~~CgGtHV~~T~eIg~~~I 240 (258)
.. ||+.+|+.|+.-+|+.+.+.+.++ ..+..+..+|+. -.+.+|+|.|+|+|+++||||||+||++|+.++|
T Consensus 155 aa----ieqsvNe~I~d~~~~~v~E~sl~d~eVeqVS~~~~~D~--haG~iRvvnI~~vDSN~CCGTHvs~~Sdl~vI~I 228 (415)
T KOG2105|consen 155 AA----IEQSVNEKIRDRLPVNVRELSLDDPEVEQVSGRGLPDD--HAGPIRVVNIEGVDSNMCCGTHVSNLSDLQVIKI 228 (415)
T ss_pred HH----HHHHHHHHHHhccchheeecccCCcchhhccCCCCccc--ccCceEEEeecCccCCccccccccchhhcceEEE
Confidence 76 999999999999999999877654 222222112211 1368999999999999999999999999999999
Q ss_pred EEEEE-eCCEEEEEEEec
Q 025098 241 SQIRT-KKGTTKVFYSVG 257 (258)
Q Consensus 241 ~~~~~-~~~~~Ri~~~~~ 257 (258)
++.++ +++.+...|..|
T Consensus 229 Lgtekg~k~rtN~~f~~G 246 (415)
T KOG2105|consen 229 LGTEKGKKNRTNLIFLSG 246 (415)
T ss_pred eeccccccCccceEEEec
Confidence 99987 445444444433
No 11
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=99.95 E-value=1e-27 Score=227.01 Aligned_cols=141 Identities=21% Similarity=0.289 Sum_probs=116.6
Q ss_pred hhhhhhhhcccHHHHHHHHHHHhCCCcccCCccccC-CCCceEeec--CCCCHHHHhhhHHHHHHHHHHHHHcCCceEEE
Q 025098 110 SRRKLNSRLHSAGHLLDVCMQKVGLGHLEPGKGYHF-PDGPYVEYK--GSVPQNELQSKTKELELEANALISRGGKVMVA 186 (258)
Q Consensus 110 ~rR~~~~~~HTa~HlL~~al~~~~~~~~~~~~g~~~-~~~~~~d~~--~~~~~~~l~~~~~~IE~~~n~~I~~~~~v~~~ 186 (258)
++|+.+|++|||+|||++|++++ ++....+.|+++ ++++|+||. .+++++++.+ ||++||++|+++.||++.
T Consensus 448 d~g~~~~r~HTAtHLL~~ALr~v-lG~~v~q~Gs~v~~d~~r~DF~~~~~it~edL~~----IE~~vNeiI~~n~pV~~~ 522 (594)
T PRK01584 448 DHSYETTKLHTATHLLHKALRLV-LGDHVRQKGSNITAERLRFDFSHPEKMTDDEIKK----VEDIVNLQIKNDLSVKKE 522 (594)
T ss_pred cccccHHHHHHHHHHHHHHHHHH-cCccceeecCCcCCCcEEEEEeCCCCCCHHHHHH----HHHHHHHHHHhCCCeEEE
Confidence 35778999999999999999986 222233467655 678999986 5789998887 999999999999999999
Q ss_pred EcCHHHHhhhcCCCCCCCCCCCCCcEEEEECCCCCcCccccccccccccccEEEEEEEE-eCCEEEEEEEe
Q 025098 187 VLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRT-KKGTTKVFYSV 256 (258)
Q Consensus 187 ~~~~~ea~~~~~~~~~~~~~~~~~vRvv~ig~~~~~~CgGtHV~~T~eIg~~~I~~~~~-~~~~~Ri~~~~ 256 (258)
+++++||++....++... ++++.||||+||++|.++||||||.||++||.|+|++.++ ++|..||+.++
T Consensus 523 ~~s~eEA~~~~~~~lf~e-~y~~~VRVV~Igd~d~elCGGTHV~nTgeIG~fkI~s~~s~g~GvrRI~av~ 592 (594)
T PRK01584 523 VMSLEEAREKGAMALFGE-KYEDIVKVYEIDGFSKEVCGGPHVENTGELGTFKIQKEQSSSSGVRRIRAIL 592 (594)
T ss_pred EcCHHHHHhcchhhhccc-cCCCcEEEEEECCeeeeCCCCCCCCCcccCceEEEEecccccCCeEEEEEEe
Confidence 999999998643222111 2467899999999999999999999999999999999875 66899999875
No 12
>PLN02837 threonine-tRNA ligase
Probab=99.84 E-value=9.3e-21 Score=183.18 Aligned_cols=140 Identities=20% Similarity=0.288 Sum_probs=115.6
Q ss_pred CEEEEEEcchhhhhhhhcccHHHHHHHHHHHhCCCcccCCccccCCCCceEeec-CCCCHHHHhhhHHHHHHHHHHHHHc
Q 025098 101 KEVRLWVDESRRKLNSRLHSAGHLLDVCMQKVGLGHLEPGKGYHFPDGPYVEYK-GSVPQNELQSKTKELELEANALISR 179 (258)
Q Consensus 101 ~~V~~~iD~~rR~~~~~~HTa~HlL~~al~~~~~~~~~~~~g~~~~~~~~~d~~-~~~~~~~l~~~~~~IE~~~n~~I~~ 179 (258)
.+|++.+|.+.|...+.+|||+|||++|++++ ++......|+.+++|+|+||. .+++++++.+ ||++||++|++
T Consensus 30 ~~~~~~~~~~~~~~~~~~HSa~HLL~~Av~~l-~~~~~~~ig~~~~~g~y~D~~~~~lt~edl~~----IEk~m~~iI~~ 104 (614)
T PLN02837 30 ERVVLPTNESSEKLLKIRHTCAHVMAMAVQKL-FPDAKVTIGPWIENGFYYDFDMEPLTDKDLKR----IKKEMDRIISR 104 (614)
T ss_pred ceEEEEeccChhhHHHHHHHHHHHHHHHHHHH-cCCcEEEECCccCCCEEEEecCCCCCHHHHHH----HHHHHHHHHHc
Confidence 58999999999999999999999999999886 222344567778899999986 4688898887 99999999999
Q ss_pred CCceEEEEcCHHHHhhhcCC---CCCCC-CC--CCCCcEEEEECCCCCcCcccccccccccc--ccEEEEEEEE
Q 025098 180 GGKVMVAVLPYEEASMLCGG---CLPHY-IP--QGSTPRIVKLGDNPGCPCGGTHVSDISEI--ISMKVSQIRT 245 (258)
Q Consensus 180 ~~~v~~~~~~~~ea~~~~~~---~~~~~-~~--~~~~vRvv~ig~~~~~~CgGtHV~~T~eI--g~~~I~~~~~ 245 (258)
|+||+..+++++||.+.|.. .+... ++ +.+.||+|+|||...++|+||||+|||+| +.|+|++++-
T Consensus 105 n~pI~~~~v~~eEA~~~f~~~~~~~k~~Ll~~~~~~~Iriy~ig~~~~D~c~GpHv~sTg~I~~~~~kl~~~~g 178 (614)
T PLN02837 105 NLPLVREEVSREEAQKRIMAINEPYKLEILEGIKEEPITIYHIGEEWWDLCAGPHVERTGKINKKAVELESVAG 178 (614)
T ss_pred CCCEEEEEecHHHHHHHHHHcCCchhHHHhccCCCCeEEEEEECCeEEEecCCCCcccccccccceEEEEEeeh
Confidence 99999999999999998632 11111 11 24579999999833788999999999999 8899988764
No 13
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.84 E-value=1.5e-20 Score=181.17 Aligned_cols=136 Identities=21% Similarity=0.274 Sum_probs=111.0
Q ss_pred hhhcccHHHHHHHHHHHhCCCcccCCccccCCCCceEeecC--CCCHHHHhhhHHHHHHHHHHHHHcCCceEEEEcCHHH
Q 025098 115 NSRLHSAGHLLDVCMQKVGLGHLEPGKGYHFPDGPYVEYKG--SVPQNELQSKTKELELEANALISRGGKVMVAVLPYEE 192 (258)
Q Consensus 115 ~~~~HTa~HlL~~al~~~~~~~~~~~~g~~~~~~~~~d~~~--~~~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~e 192 (258)
.+.+|||+|||++|++++ ++......++++++|+|+||.. .++++++.+ ||++||++|+++.||....++++|
T Consensus 7 ~~~~hS~~hlL~~A~~~~-~~~~~~~~~~~~~~g~~~d~~~~~~it~e~l~~----Ie~~m~~lI~~~~pi~~~~v~~ee 81 (575)
T PRK12305 7 EVIRHSAAHVLAQAVQEL-FPDAKLGIGPPIEDGFYYDFDVPEPFTPEDLKK----IEKKMKKIIKRGLPFEREEVSREE 81 (575)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCceEEeCCCcCCeEEEEeeCCCCCCHHHHHH----HHHHHHHHHhcCCCEEEEEecHHH
Confidence 468999999999999886 3334455677778999999854 688888877 999999999999999999999999
Q ss_pred HhhhcCC-CC----CCCCCCCCCcEEEEECCCCCcCccccccccccccccEEEEEEE--------EeCCEEEEEEEec
Q 025098 193 ASMLCGG-CL----PHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIR--------TKKGTTKVFYSVG 257 (258)
Q Consensus 193 a~~~~~~-~~----~~~~~~~~~vRvv~ig~~~~~~CgGtHV~~T~eIg~~~I~~~~--------~~~~~~Ri~~~~~ 257 (258)
|.+++.. .+ .... +++.||+|+||++ .++|+||||+|||+||.|+|++++ +.++..||+.++=
T Consensus 82 A~~~f~~~~~k~~l~~~~-~~~~vri~~ig~~-~d~c~Gthv~~T~~i~~f~i~~~~~~~~~~~~~~~~l~Ri~g~~~ 157 (575)
T PRK12305 82 AREEFANEPYKLELIDDI-PEEGITIYDNGDF-EDLCRGPHVPNTKFIKAFKLTSVAGAYWRGDEKNPQLQRIYGTAW 157 (575)
T ss_pred HHHhCCcChhHHHhhhhc-CCCeEEEEEECCE-EEECCCCCCCCccCCceeEEEEEcceEECCCCCCcceEEEEEEec
Confidence 9998753 11 1112 2347999999997 489999999999999999999883 3567899998763
No 14
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.83 E-value=8.9e-20 Score=177.80 Aligned_cols=156 Identities=20% Similarity=0.315 Sum_probs=127.3
Q ss_pred cccCCCCEEEEEEcchhhhhhhhcccHHHHHHHHHHHhCCCcccCCccccCCCCceEeec--CCCCHHHHhhhHHHHHHH
Q 025098 95 MELEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQKVGLGHLEPGKGYHFPDGPYVEYK--GSVPQNELQSKTKELELE 172 (258)
Q Consensus 95 ~~~~~g~~V~~~iD~~rR~~~~~~HTa~HlL~~al~~~~~~~~~~~~g~~~~~~~~~d~~--~~~~~~~l~~~~~~IE~~ 172 (258)
..+..+.+|+..-..+.+-..+.+|||+|||++|++++ ++......+++.++|+|+||. ..++++++.+ ||++
T Consensus 49 ~~l~~d~~Vefi~~~~~~g~~~y~hS~~hll~~A~~~~-~~~~~~~~~~~~~~g~y~d~~~~~~lt~e~l~~----Ie~~ 123 (638)
T PRK00413 49 TPIEEDASLEIITAKDEEGLEIIRHSAAHLLAQAVKRL-YPDAKLTIGPVIENGFYYDFDRERPFTPEDLEA----IEKE 123 (638)
T ss_pred ccccCCCceeeeeccchhhHHHHhhhHHHHHHHHHHHH-cCCceEEECCccCCeEEEEEeCCCCCCHHHHHH----HHHH
Confidence 45677788998888888888999999999999999986 333444567777889999984 4689888877 9999
Q ss_pred HHHHHHcCCceEEEEcCHHHHhhhcCCC-CC------CCCCCCCCcEEEEECCCCCcCccccccccccccccEEEEEEE-
Q 025098 173 ANALISRGGKVMVAVLPYEEASMLCGGC-LP------HYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIR- 244 (258)
Q Consensus 173 ~n~~I~~~~~v~~~~~~~~ea~~~~~~~-~~------~~~~~~~~vRvv~ig~~~~~~CgGtHV~~T~eIg~~~I~~~~- 244 (258)
||++|++|+||....++++||.++|... .+ ...+.++.+|+|+++++ .++|+||||+|||+|+.|+|.+.+
T Consensus 124 m~~iI~~~~pi~~~~v~~~eA~~~f~~~~~~~k~~ll~~~~~~~~v~iy~~~~~-~d~c~G~hv~~Tg~i~~f~i~~~~~ 202 (638)
T PRK00413 124 MKEIIKENYPIEREVVSREEAIELFKDRGEPYKVELIEEIPEDEEISLYRQGEF-VDLCRGPHVPSTGKIKAFKLLKVAG 202 (638)
T ss_pred HHHHHhcCCCEEEEEecHHHHHHHHHhcCCccHHHHhhcCCCCCeEEEEEECCE-EEECCCCCCCcccCCceeEEEEEcc
Confidence 9999999999999999999999987531 11 12233457999999997 589999999999999999999883
Q ss_pred -------EeCCEEEEEEEe
Q 025098 245 -------TKKGTTKVFYSV 256 (258)
Q Consensus 245 -------~~~~~~Ri~~~~ 256 (258)
+.++..||+=.+
T Consensus 203 g~~l~~~~~~~l~Ri~g~~ 221 (638)
T PRK00413 203 AYWRGDSKNKMLQRIYGTA 221 (638)
T ss_pred eEEcCCCcchheEEEEeee
Confidence 356788887554
No 15
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=99.77 E-value=3.8e-18 Score=166.24 Aligned_cols=155 Identities=22% Similarity=0.343 Sum_probs=116.9
Q ss_pred ccCCCCEEEEEEcchhhhhhhhcccHHHHHHHHHHHhCCCcccCCccccCCCCceEeec--CCCCHHHHhhhHHHHHHHH
Q 025098 96 ELEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQKVGLGHLEPGKGYHFPDGPYVEYK--GSVPQNELQSKTKELELEA 173 (258)
Q Consensus 96 ~~~~g~~V~~~iD~~rR~~~~~~HTa~HlL~~al~~~~~~~~~~~~g~~~~~~~~~d~~--~~~~~~~l~~~~~~IE~~~ 173 (258)
++..+.+|+..=-.+.--..+.+||++|||++|++++ ++......++..++|+|+||. ..++++++.+ ||++|
T Consensus 54 ~i~~d~~i~fv~~~~~~g~~iy~hS~~hlL~~A~~~~-~~~~~~~i~~~~~~g~y~d~~~~~~it~edl~~----Ie~~m 128 (639)
T PRK12444 54 NLEEDAEVEIITIDSNEGVEIARHSAAHILAQAVKRL-YGDVNLGVGPVIENGFYYDMDLPSSVNVEDLRK----IEKEM 128 (639)
T ss_pred ccCCCCeEEEecCCChHHHHHHHHHHHHHHHHHHHHH-cCCcEEEeCCcCCCeEEEEEeCCCCCCHHHHHH----HHHHH
Confidence 4455555654433333444678999999999999886 223334456667889999985 3688898887 99999
Q ss_pred HHHHHcCCceEEEEcCHHHHhhhcCCC-CC------CCCCCCCCcEEEEECCCCCcCccccccccccccccEEEEEEEEe
Q 025098 174 NALISRGGKVMVAVLPYEEASMLCGGC-LP------HYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRTK 246 (258)
Q Consensus 174 n~~I~~~~~v~~~~~~~~ea~~~~~~~-~~------~~~~~~~~vRvv~ig~~~~~~CgGtHV~~T~eIg~~~I~~~~~~ 246 (258)
|++|++++||....++++||.++|... .+ ...+.+..+|+|+++++ .+.|+||||+|||+|+.|+|++.+..
T Consensus 129 ~eiI~~~~pI~~~~v~~eeA~~~F~~~~~~~K~~ll~~~~~~~~v~iy~~~~~-~D~c~G~hv~sTg~ik~f~l~~~~~g 207 (639)
T PRK12444 129 KKIINENIKIERVEVSREEAAKLFQEMNDRLKLELLEAIPSGESITLYKQGEF-VDLCRGPHLPSTGYLKAFQLTHVSGA 207 (639)
T ss_pred HHHHhcCCCEEEEEecHHHHHHHHhhcCCchHHHHHhcCCCCCeEEEEEECCE-EEEcCCcCCCCCCCCceeEEEEEcce
Confidence 999999999999999999999987531 11 12233457999999996 68899999999999999999887643
Q ss_pred --------CCEEEEEEEe
Q 025098 247 --------KGTTKVFYSV 256 (258)
Q Consensus 247 --------~~~~Ri~~~~ 256 (258)
+...||+=++
T Consensus 208 ~~~g~~~~~~l~Ri~g~a 225 (639)
T PRK12444 208 YWRGDSNNQVLQRIYGVA 225 (639)
T ss_pred EEcCCCCCcceEEEEEEe
Confidence 4567876443
No 16
>PLN02908 threonyl-tRNA synthetase
Probab=99.73 E-value=3.7e-17 Score=160.10 Aligned_cols=143 Identities=15% Similarity=0.190 Sum_probs=110.8
Q ss_pred ccCCCCEEEEEEcchhhhhhhhcccHHHHHHHHHHHhCCCcccCCccccCC--CCceEeec---CCCCHHHHhhhHHHHH
Q 025098 96 ELEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQKVGLGHLEPGKGYHFP--DGPYVEYK---GSVPQNELQSKTKELE 170 (258)
Q Consensus 96 ~~~~g~~V~~~iD~~rR~~~~~~HTa~HlL~~al~~~~~~~~~~~~g~~~~--~~~~~d~~---~~~~~~~l~~~~~~IE 170 (258)
++..+.++++.=-.+..-.-+.+||++|||.+|++++-. .....|+.+. +|+|+|+. ..++++++.. ||
T Consensus 101 ~l~~d~~le~l~~~~~eg~~~y~hS~ahlL~~A~~~~~~--~~l~ig~~i~~~~Gfy~d~~~~~~~~t~edl~~----Ie 174 (686)
T PLN02908 101 PLEGDCKLKLFKFDDDEGRDTFWHSSAHILGEALELEYG--CKLCIGPCTTRGEGFYYDAFYGDRTLNEEDFKP----IE 174 (686)
T ss_pred cccCCCeeEEeccccHHHHHHHHHHHHHHHHHHHHHHhC--CeEEecCccccCCcEEEEeecCCCCCCHHHHHH----HH
Confidence 455455566443333355568999999999999988511 2234566676 78999964 3689998887 99
Q ss_pred HHHHHHHHcCCceEEEEcCHHHHhhhcCC-CC----CCCCCCCCCcEEEEECCCCCcCccccccccccccccEEEEEEEE
Q 025098 171 LEANALISRGGKVMVAVLPYEEASMLCGG-CL----PHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRT 245 (258)
Q Consensus 171 ~~~n~~I~~~~~v~~~~~~~~ea~~~~~~-~~----~~~~~~~~~vRvv~ig~~~~~~CgGtHV~~T~eIg~~~I~~~~~ 245 (258)
++|+++|++++||+...++++||.++|.. .+ ....++++.++++++|++ .++|.||||+|||+|+.|+|++.+.
T Consensus 175 ~~m~~iI~~~~pi~r~~v~~eeA~e~F~~~~~K~~ll~~~~~~~~v~vY~~g~~-~D~c~Gphv~sTg~ik~f~l~~~~~ 253 (686)
T PLN02908 175 ARAEKAVKEKQPFERIEVTREEALEMFSENKFKVEIINDLPEDATITVYRCGPL-VDLCRGPHIPNTSFVKAFACLKASS 253 (686)
T ss_pred HHHHHHHhcCCCeEEEEEcHHHHHHHHhhCCcHHHHHhhCCCCCeeEEEEECCE-EEecCCCCCCCCCccceeEEEEecc
Confidence 99999999999999999999999998852 11 122344557999999997 6889999999999999999988873
No 17
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=99.70 E-value=3.1e-17 Score=156.49 Aligned_cols=93 Identities=39% Similarity=0.593 Sum_probs=58.3
Q ss_pred ceeceeccccceEeeeEEEEEEe--------cCCCeEEEEEcCccccCCCCCCCCCeEEEEecCCCeEEEEEEEEEeCCE
Q 025098 8 TKLDYYDNMLKLQSTSKLISYFK--------GDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGI 79 (258)
Q Consensus 8 t~~ly~~~~y~~~~~a~V~~v~~--------~~~~~~~ivld~T~Fype~GGQ~~D~G~i~~~~~~~~~~V~~v~~~~~~ 79 (258)
|+.++|++ ++++|+|+++.. ..++..+||||+|+|||||||||+|+|+|..++ ..|.|.+|++.+|.
T Consensus 452 teF~gYe~---~~~~akVlal~~~~~~~~~v~~~~~~~VVLD~T~FYpegGGQ~~D~G~I~~~~--~~~~V~dv~k~~g~ 526 (552)
T PF01411_consen 452 TEFVGYEY---LECEAKVLALFKDGEFVAKVEEGEEGYVVLDKTPFYPEGGGQPGDTGTIIGDG--GEFEVTDVQKVGGV 526 (552)
T ss_dssp EETCCCC---------TT---TT--EEEEEEEEEETTEEEESEE-S--SBTTB----EEECCTT--EEEEEEEEEEETTE
T ss_pred cccceeec---ccccceEEEEEeCCEEEeeecCCceEEEEECCccccCCCCCCCCCeEEEeecc--eEEEEEEEEEECCE
Confidence 55678876 245555554421 123347899999999999999999999998763 66889999999999
Q ss_pred EEEEEEEecCCcccccccCCCCEEEEEEcchh
Q 025098 80 VFHYGVVENSGGEFEMELEKGKEVRLWVDESR 111 (258)
Q Consensus 80 i~H~~~~~~~~~~~~~~~~~g~~V~~~iD~~r 111 (258)
++|++.+. .+.+.+|+.|++.|||+|
T Consensus 527 i~H~~~~~------~g~l~~G~~V~~~VD~eR 552 (552)
T PF01411_consen 527 ILHIGEVE------SGSLKVGDEVTAEVDWER 552 (552)
T ss_dssp EEEEESSG-------GG--TTSEEEEEE-HHH
T ss_pred EEEEEecc------CCCCCCCCEEEEEecCCC
Confidence 99986542 257899999999999997
No 18
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=99.66 E-value=4.8e-16 Score=149.59 Aligned_cols=133 Identities=21% Similarity=0.291 Sum_probs=104.1
Q ss_pred cccHHHHHHHHHHHhCCCcccCCccccCCCCceEeec--CCCCHHHHhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhh
Q 025098 118 LHSAGHLLDVCMQKVGLGHLEPGKGYHFPDGPYVEYK--GSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASM 195 (258)
Q Consensus 118 ~HTa~HlL~~al~~~~~~~~~~~~g~~~~~~~~~d~~--~~~~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~ 195 (258)
+||++|||++|++++ .+......++.+++|+|+||. ..++++++.+ ||++||++|++++||....++++||.+
T Consensus 1 ~HS~~hLl~~Al~~~-~~~~~~~~~~~i~~g~~~df~~~~~~t~eel~~----Ie~~m~~lI~~~~pi~~~~~~~eeA~~ 75 (563)
T TIGR00418 1 RHSIAHLLAEALKQL-YPDVKLAIGPVVEDGFYYDFELDRSFTQEDLEK----IEKDMKEIAKKNYPVAKLSVSLEEALE 75 (563)
T ss_pred CChHHHHHHHHHHHH-cCCcEEEEcCCcCCCceecccCCCCCCHHHHHH----HHHHHHHHHhcCCCEEEEEECHHHHHH
Confidence 699999999999886 323334556777889999985 3688888887 999999999999999999999999999
Q ss_pred hcC--CCCC----CCCCCCCCcEEEEECCCCCcCccccccccccccccEEEEEEEEe--------CCEEEEEEE
Q 025098 196 LCG--GCLP----HYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRTK--------KGTTKVFYS 255 (258)
Q Consensus 196 ~~~--~~~~----~~~~~~~~vRvv~ig~~~~~~CgGtHV~~T~eIg~~~I~~~~~~--------~~~~Ri~~~ 255 (258)
.+. ..+. +..+++..||++.+|++..+.|.||||+|||.|+.|+|.+.... +-..||+-+
T Consensus 76 ~f~~~~~~k~~Ll~~~~~~~~v~vy~~g~~~~d~~~G~~v~~Tg~i~~f~l~~~~~g~~l~~~~~~~l~Ri~g~ 149 (563)
T TIGR00418 76 AFKVLEPYKLELLDEIPNGVKRTPYGWGKAFVDLCKGPHLPNTSFIKAFKLEKVAGAYWRGDSKNKMLQRIYGT 149 (563)
T ss_pred HHhccChhHHHHHhcCCCCCeEEEEEeCCEEEEEcCCCcCCCCCCCceeEEEEeccceEeEcCCCCceEeeeec
Confidence 875 1111 11123467999999994489999999999999999999866532 345666543
No 19
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [].; GO: 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3KEW_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A 1NYQ_B 1NYR_A 2ZTG_A 2ZZF_A ....
Probab=99.58 E-value=2.6e-15 Score=95.34 Aligned_cols=43 Identities=35% Similarity=0.597 Sum_probs=35.6
Q ss_pred cEEEEECCCCCcCccccccccccccccEEEEEEE-EeCCEEEEE
Q 025098 211 PRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIR-TKKGTTKVF 253 (258)
Q Consensus 211 vRvv~ig~~~~~~CgGtHV~~T~eIg~~~I~~~~-~~~~~~Ri~ 253 (258)
||+|+||+++.++||||||+||++|+.|+|++.+ ++++..||+
T Consensus 1 vRvv~i~~~~~~~C~GtHv~~T~~i~~~~i~~~~~~~~~~~RI~ 44 (44)
T PF07973_consen 1 VRVVRIGDFDVDLCGGTHVPNTGEIGHFKILKGESKGKGLRRIY 44 (44)
T ss_dssp EEEEEETTTEEEEESS---SBGGGG-CEEEEEEEEEETTEEEEE
T ss_pred CEEEEECCeeEECCCCcccCChhEECcEEEEEeEEEcCCcEEeC
Confidence 6999999999999999999999999999999766 478999986
No 20
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1.2e-14 Score=138.20 Aligned_cols=124 Identities=20% Similarity=0.279 Sum_probs=103.1
Q ss_pred hhhhhhcccHHHHHHHHHHHhCCCcccCCccccCCCCceEeec--CCCCHHHHhhhHHHHHHHHHHHHHcCCceEEEEcC
Q 025098 112 RKLNSRLHSAGHLLDVCMQKVGLGHLEPGKGYHFPDGPYVEYK--GSVPQNELQSKTKELELEANALISRGGKVMVAVLP 189 (258)
Q Consensus 112 R~~~~~~HTa~HlL~~al~~~~~~~~~~~~g~~~~~~~~~d~~--~~~~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~ 189 (258)
...-..+||++|||+.|++++ ++. ...|+.+++|+|+||. .+++++++.. ||+.|++++.+++++....++
T Consensus 24 ~~~~~~rhs~ah~l~~av~~l-~p~--~~~gp~ie~gfyyd~~~~~~~~~~dl~~----ie~~m~~i~~~~~~~~~~~~~ 96 (589)
T COG0441 24 EGLEIIRHSCAHVLAQAVKRL-YPD--VTIGPVIEEGFYYDFDVKEPITPEDLLK----IEKEMKEIAKENLPIEREVVS 96 (589)
T ss_pred cchhhhhhHHHHHHHHHHHHh-CCC--ccccCcccceeEEeeccCCCCCHHHHHH----HHHHHHHHHHhcCceEEEEec
Confidence 455678999999999999987 434 3457888999999985 4489999988 999999999999999999999
Q ss_pred HHHHhhhcCCCCCCC-C-CCCCCcEEEEECCCCCcCccccccccccccccEEEEEEEE
Q 025098 190 YEEASMLCGGCLPHY-I-PQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRT 245 (258)
Q Consensus 190 ~~ea~~~~~~~~~~~-~-~~~~~vRvv~ig~~~~~~CgGtHV~~T~eIg~~~I~~~~~ 245 (258)
+++|++.|+ .|..+ + ..+..+.+++-|.+ .++|.||||++|+.| .|++++++.
T Consensus 97 ~e~a~~~f~-~yK~~~i~~~~~~~s~y~~~~~-~dlc~gph~~~t~~i-~fkl~~~~~ 151 (589)
T COG0441 97 REEARAPFG-PYKAELIDCKGHPLSEYSQGEF-VDLCRGPHVPSTGKI-AFKLLKLAG 151 (589)
T ss_pred HHHHHHHhh-hhHHHHHhcCCCCceeEecCcc-ccccCCCCCCccceE-EEEEEEecc
Confidence 999999986 33211 1 12367889998887 899999999999999 999998863
No 21
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain. The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Probab=99.43 E-value=1.5e-13 Score=87.34 Aligned_cols=43 Identities=33% Similarity=0.565 Sum_probs=38.6
Q ss_pred cEEEEECCCCCcCccccccccccccccEEEEEEEE-eCCEEEEE
Q 025098 211 PRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRT-KKGTTKVF 253 (258)
Q Consensus 211 vRvv~ig~~~~~~CgGtHV~~T~eIg~~~I~~~~~-~~~~~Ri~ 253 (258)
+|+|.|+++|.+||+||||.||++||.|+|++.+. .++..||+
T Consensus 1 vriv~i~~~~~~~C~GtHv~~t~~I~~i~i~~~~~~~~~~~Ri~ 44 (44)
T smart00863 1 VRVVSIGDFDVELCGGTHVPNTGEIGAFKILSVSGAYWGLQRIY 44 (44)
T ss_pred CEEEEECCEEEECCCCcccCChhhCcEEEEEEEeeeecCeEEeC
Confidence 68999999999999999999999999999999987 45667874
No 22
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=4.6e-05 Score=70.18 Aligned_cols=36 Identities=28% Similarity=0.460 Sum_probs=28.9
Q ss_pred hhhcccHHHHHHHHHHHh-CCCcccCCccccCCCCceEee
Q 025098 115 NSRLHSAGHLLDVCMQKV-GLGHLEPGKGYHFPDGPYVEY 153 (258)
Q Consensus 115 ~~~~HTa~HlL~~al~~~-~~~~~~~~~g~~~~~~~~~d~ 153 (258)
-..|||++|+|+.|++++ |+ ++. .|+.+++|+|+|+
T Consensus 67 ~vfwhssahvlg~a~e~~~g~-~lc--~Gpp~~~gf~yd~ 103 (560)
T KOG1637|consen 67 DVFWHSSAHVLGEALEQEYGA-HLC--IGPPIEEGFYYDM 103 (560)
T ss_pred eeeeehhhhHhhHHHHHhcCe-eEe--eCCCCcCceehhh
Confidence 479999999999999986 43 333 5788889999875
No 23
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=96.95 E-value=0.0011 Score=63.84 Aligned_cols=42 Identities=14% Similarity=0.053 Sum_probs=33.1
Q ss_pred EEEECCCCCcCccc-cccccccccccEEEEEEEEeC-----CEEEEEEE
Q 025098 213 IVKLGDNPGCPCGG-THVSDISEIISMKVSQIRTKK-----GTTKVFYS 255 (258)
Q Consensus 213 vv~ig~~~~~~CgG-tHV~~T~eIg~~~I~~~~~~~-----~~~Ri~~~ 255 (258)
++.+|.+ +++|.| |||+||+.|+.|++++++..+ -..||+=+
T Consensus 70 ~~~~~~~-~~~~~~~ph~~~t~~~~~fkl~~~~~~g~~~~~~l~Riyg~ 117 (545)
T PRK14799 70 IVYKGNK-VSIIEDKVSISTNLNPKYFEILNISTHHPNPNEQYVRIRGV 117 (545)
T ss_pred EEEccCc-eeecCCCCCCCCCCCcceEEEEEeccCCCccCceeEEEEEe
Confidence 3347776 899999 999999999999999998642 34677643
No 24
>COG1854 LuxS LuxS protein involved in autoinducer AI2 synthesis [Signal transduction mechanisms]
Probab=71.68 E-value=11 Score=30.09 Aligned_cols=60 Identities=20% Similarity=0.277 Sum_probs=39.3
Q ss_pred hhhhcccHHHHHHHHHHHhCCCcccCC----ccccCCCCceEeecCCCCHHHHhhhHHHHHHHHHHHHH
Q 025098 114 LNSRLHSAGHLLDVCMQKVGLGHLEPG----KGYHFPDGPYVEYKGSVPQNELQSKTKELELEANALIS 178 (258)
Q Consensus 114 ~~~~~HTa~HlL~~al~~~~~~~~~~~----~g~~~~~~~~~d~~~~~~~~~l~~~~~~IE~~~n~~I~ 178 (258)
...-.||..||++..+|...-+..+.. .|+ .-|||+-+-+..+.+++.+ .+++.+.++..
T Consensus 49 ~~~~iHTlEHL~A~~iRnh~~g~~~iID~SPMGC--rTGFYm~l~G~~~~~~i~~---~~~~~m~dvl~ 112 (161)
T COG1854 49 PPAGIHTLEHLLAGFIRNHLNGNVEIIDISPMGC--RTGFYMILIGTPTSQDIAD---VLEATMKDVLK 112 (161)
T ss_pred CccchhhHHHHHHHHHHhcccCceeEEEecCccc--ccceEEEEECCCCHHHHHH---HHHHHHHHHHc
Confidence 345689999999999997522111111 233 2478988877777777644 47777777765
No 25
>COG4014 Uncharacterized protein conserved in archaea [Function unknown]
Probab=71.67 E-value=6 Score=28.53 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=23.4
Q ss_pred EeeeEEEEEEecCCCeEEEEEcCccccC
Q 025098 20 QSTSKLISYFKGDDGRRALILESTIFHP 47 (258)
Q Consensus 20 ~~~a~V~~v~~~~~~~~~ivld~T~Fyp 47 (258)
-...+|.+|...+++..||+||.|.+|-
T Consensus 21 gTvgrV~dIkkdEdG~~WV~LdstdLwY 48 (97)
T COG4014 21 GTVGRVVDIKKDEDGDIWVVLDSTDLWY 48 (97)
T ss_pred CceeeEEEEEeecCCceEEEEecCCcee
Confidence 4568899998777888999999988765
No 26
>COG0307 RibC Riboflavin synthase alpha chain [Coenzyme metabolism]
Probab=64.41 E-value=59 Score=27.37 Aligned_cols=86 Identities=15% Similarity=0.160 Sum_probs=51.4
Q ss_pred EeeeEEEEEEecCCCeEEEEEcCcc-ccCCCCCCCCCeEEEEecCCCeEEEEEEEEEeCCEEEEEEEEecCCc-cccccc
Q 025098 20 QSTSKLISYFKGDDGRRALILESTI-FHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENSGG-EFEMEL 97 (258)
Q Consensus 20 ~~~a~V~~v~~~~~~~~~ivld~T~-Fype~GGQ~~D~G~i~~~~~~~~~~V~~v~~~~~~i~H~~~~~~~~~-~~~~~~ 97 (258)
..+|+|+++.+ +++.+.+.+-..+ -+ -=...-.|.|..+ ++..+|.+|. .+..-+++ ++-... -.-+..
T Consensus 101 Dg~g~I~~i~~-~~na~~~~~~~~~~~l---~kyiv~KGsIavD--GiSLTV~~v~-~~~F~V~l--IPhT~~~T~l~~~ 171 (204)
T COG0307 101 DGTGEIVKIEK-DGNAVRFWFKAPPEEL---AKYIVEKGSIAVD--GISLTVNEVE-DDTFSVSL--IPHTLERTTLGEK 171 (204)
T ss_pred eeEEEEEEEEE-cCCeEEEEEEcCCHHH---HhhhcccceEEEe--eEEEEEEEEc-CCEEEEEE--Eecchhhcchhhc
Confidence 45788888885 4444555543221 11 1124567888886 5666788887 33344553 332110 002356
Q ss_pred CCCCEEEEEEcchhhhh
Q 025098 98 EKGKEVRLWVDESRRKL 114 (258)
Q Consensus 98 ~~g~~V~~~iD~~rR~~ 114 (258)
++|+.|.+++|.--||-
T Consensus 172 ~~Gd~VNiE~D~l~kyv 188 (204)
T COG0307 172 KVGDRVNIEIDVLAKYV 188 (204)
T ss_pred cCCCEEEEeEcHHHHHH
Confidence 89999999999998875
No 27
>PRK02260 S-ribosylhomocysteinase; Provisional
Probab=62.76 E-value=81 Score=25.47 Aligned_cols=60 Identities=17% Similarity=0.280 Sum_probs=37.2
Q ss_pred hhhhhcccHHHHHHHHHHHhCCC--cc-cC-CccccCCCCceEeecCCCCHHHHhhhHHHHHHHHHHHH
Q 025098 113 KLNSRLHSAGHLLDVCMQKVGLG--HL-EP-GKGYHFPDGPYVEYKGSVPQNELQSKTKELELEANALI 177 (258)
Q Consensus 113 ~~~~~~HTa~HlL~~al~~~~~~--~~-~~-~~g~~~~~~~~~d~~~~~~~~~l~~~~~~IE~~~n~~I 177 (258)
......||..||++..++..... .+ -. -.|+ .-|||+-.-+..+.+++.+ .+++.+..+.
T Consensus 48 m~~~alHTlEHL~At~lRn~~~~~~~iI~~sPMGC--rTGFYli~~g~~~~~~i~~---l~~~~l~~i~ 111 (158)
T PRK02260 48 MPTAGIHTLEHLLAGFLRNHLDGGVEIIDISPMGC--RTGFYLILIGTPDEEDVAD---ALKATLEDVL 111 (158)
T ss_pred CCCcchhHHHHHHHHHHhhCccCCceEEEECCCcc--ccccEEEEeCCCCHHHHHH---HHHHHHHHHH
Confidence 34567899999999999874110 01 00 0233 2368887777788887654 3566665554
No 28
>PF02664 LuxS: S-Ribosylhomocysteinase (LuxS); InterPro: IPR003815 In bacteria, the regulation of gene expression in response to changes in cell density is called quorum sensing. Quorum-sensing bacteria produce, release, and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. For example, enteric bacteria use quorum sensing to regulate several traits that allow them to establish and maintain infection in their host, including motility, biofilm formation, and virulence-specific genes []. The LuxS/AI-2 system is one of several quorum sensing mechanisms. AI-2 (autoinducer-2) is a signalling molecule that functions in interspecies communication by regulating niche-specific genes with diverse functions in various bacteria, often in response to population density. LuxS (S-ribosylhomocysteinase; 4.4.1.21 from EC) is an autoinducer-production protein that has a metabolic function as a component of the activated methyl cycle. LuxS converts S-ribosylhomocysteine to homocysteine and 4,5-dihydroxy-2,3-pentanedione (DPD); DPD can then spontaneously cyclise to active AI-2 [, ]. LuxS is a homodimeric iron-dependent metalloenzyme containing two identical tetrahedral metal-binding sites similar to those found in peptidases and amidases []. ; GO: 0005506 iron ion binding, 0009372 quorum sensing; PDB: 1J6X_B 1VGX_A 1INN_B 1VJE_B 1J6V_A 1VH2_A 1J6W_B 1JOE_B 1J98_A 1IE0_A ....
Probab=37.68 E-value=61 Score=26.13 Aligned_cols=62 Identities=15% Similarity=0.206 Sum_probs=35.2
Q ss_pred hhhhhcccHHHHHHHHHHHh-CC--Ccc-cC-CccccCCCCceEeecCCCCHHHHhhhHHHHHHHHHHHHHc
Q 025098 113 KLNSRLHSAGHLLDVCMQKV-GL--GHL-EP-GKGYHFPDGPYVEYKGSVPQNELQSKTKELELEANALISR 179 (258)
Q Consensus 113 ~~~~~~HTa~HlL~~al~~~-~~--~~~-~~-~~g~~~~~~~~~d~~~~~~~~~l~~~~~~IE~~~n~~I~~ 179 (258)
......||..||++..++.. .+ ..+ -. -.|+ .-|||+-..+..+.+++.+ .+++.++.++..
T Consensus 47 m~~~~lHTlEHL~A~~lRn~~~~~~~~iI~~gPMGC--rTGFYli~~g~~~~~~i~~---l~~~~l~~i~~~ 113 (157)
T PF02664_consen 47 MDTAALHTLEHLFATYLRNHLDGDKDKIIDFGPMGC--RTGFYLILWGDPSSEDIAD---LLKETLEFILEF 113 (157)
T ss_dssp --HHHHHHHHHHHHHHHHHHHSCTTEEEEEEEE-TT--SSEEEEEEESS--HHHHHH---HHHHHHHHHHT-
T ss_pred CCCcchhHHHHHHHHHHhcCccCCCCeEEEecCccc--ccccEEEEeCCCCHHHHHH---HHHHHHHHHHhc
Confidence 34567899999999999875 21 011 00 0233 2368887777777776543 366666666543
No 29
>PF10750 DUF2536: Protein of unknown function (DUF2536); InterPro: IPR019686 This entry represents proteins with unknown function appears to be restricted to Bacillus spp.
Probab=36.81 E-value=28 Score=23.75 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=18.6
Q ss_pred CHHHHhhhHHHHHHHHHHHHHcCCceEEE
Q 025098 158 PQNELQSKTKELELEANALISRGGKVMVA 186 (258)
Q Consensus 158 ~~~~l~~~~~~IE~~~n~~I~~~~~v~~~ 186 (258)
...++.. +|+++|+.|..|.++-..
T Consensus 16 EA~~l~~----LEkkIneqIe~NkailL~ 40 (68)
T PF10750_consen 16 EANDLQT----LEKKINEQIEHNKAILLE 40 (68)
T ss_pred ecchHHH----HHHHHHHHHhcCceEEEE
Confidence 3345555 999999999998876443
No 30
>PF09871 DUF2098: Uncharacterized protein conserved in archaea (DUF2098); InterPro: IPR019209 This family of proteins have no known function.
Probab=33.56 E-value=56 Score=23.82 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=21.4
Q ss_pred EeeeEEEEEEecCCCeEEEEEcCccccC
Q 025098 20 QSTSKLISYFKGDDGRRALILESTIFHP 47 (258)
Q Consensus 20 ~~~a~V~~v~~~~~~~~~ivld~T~Fyp 47 (258)
-...+|+++. .+++..|+.||.|-+|-
T Consensus 15 GT~G~V~diK-~ed~~~wv~LD~t~L~Y 41 (91)
T PF09871_consen 15 GTVGKVVDIK-EEDGETWVLLDSTDLYY 41 (91)
T ss_pred CeEEEEEEEE-EeCCCeEEEEccCCcee
Confidence 4567888886 46778999999998876
No 31
>PRK15464 cold shock-like protein CspH; Provisional
Probab=27.85 E-value=1.7e+02 Score=19.99 Aligned_cols=34 Identities=15% Similarity=0.078 Sum_probs=23.4
Q ss_pred CEEEEEEEEecCCcccccccCCCCEEEEEEcchhhhh
Q 025098 78 GIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKL 114 (258)
Q Consensus 78 ~~i~H~~~~~~~~~~~~~~~~~g~~V~~~iD~~rR~~ 114 (258)
+..+|+-.+.... ...|.+|+.|+..+...+|-.
T Consensus 29 DvFvH~s~l~~~g---~~~l~~G~~V~f~v~~~~kG~ 62 (70)
T PRK15464 29 EVQVHISAFTPRD---AEVLIPGLRVEFCRVNGLRGP 62 (70)
T ss_pred cEEEEehhehhcC---CCCCCCCCEEEEEEEECCCCc
Confidence 4678875553221 235899999999998887743
No 32
>PLN02741 riboflavin synthase
Probab=26.05 E-value=3.9e+02 Score=22.26 Aligned_cols=86 Identities=19% Similarity=0.177 Sum_probs=49.6
Q ss_pred EeeeEEEEEEecCCCeEEEEEcCccccCCC-CCCCCCeEEEEecCCCeEEEEEEEEEeCCEEEEEEEEecCCc-cccccc
Q 025098 20 QSTSKLISYFKGDDGRRALILESTIFHPQG-GGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENSGG-EFEMEL 97 (258)
Q Consensus 20 ~~~a~V~~v~~~~~~~~~ivld~T~Fype~-GGQ~~D~G~i~~~~~~~~~~V~~v~~~~~~i~H~~~~~~~~~-~~~~~~ 97 (258)
...|+|+++.. .++...+.+.- |+. -...-..|.|..+ ++..+|.++...++. +-+..++.... -..+.+
T Consensus 104 d~~~~i~~~~~-~~~~~~~~i~~----p~~~~~yi~~KGsIavd--GvSLTV~~v~~~~~~-f~v~lIP~T~~~T~l~~~ 175 (194)
T PLN02741 104 DGTGTIVEQEP-EGDSLWVKVKA----DPELLKYIVPKGFIAVD--GTSLTVVDVDDEEGC-FNFMLVPYTQQKVVIPLK 175 (194)
T ss_pred cEEEEEEEEEE-CCCcEEEEEEE----CHHHHcccccCcEEEEe--eEEEEEEEeecCCCE-EEEEEcHHHHhhcccccC
Confidence 56788999885 33334444431 221 2346788999887 566678888542332 33222322110 002457
Q ss_pred CCCCEEEEEEcchhhh
Q 025098 98 EKGKEVRLWVDESRRK 113 (258)
Q Consensus 98 ~~g~~V~~~iD~~rR~ 113 (258)
++|+.|.+++|.=-||
T Consensus 176 k~Gd~VNiE~D~~~ky 191 (194)
T PLN02741 176 KVGDKVNLEVDILGKY 191 (194)
T ss_pred CCCCEEEEeEEchhhh
Confidence 9999999999955444
No 33
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=24.36 E-value=2.3e+02 Score=19.14 Aligned_cols=33 Identities=18% Similarity=0.537 Sum_probs=22.3
Q ss_pred CEEEEEEEEecCCcccccccCCCCEEEEEEcchhhh
Q 025098 78 GIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRK 113 (258)
Q Consensus 78 ~~i~H~~~~~~~~~~~~~~~~~g~~V~~~iD~~rR~ 113 (258)
+..+|+-.+.... ...|.+|+.|+..+....|-
T Consensus 29 dvfvH~s~l~~~g---~~~l~~G~~V~f~~~~~~~G 61 (70)
T PRK10354 29 DVFVHFSAIQNDG---YKSLDEGQKVSFTIESGAKG 61 (70)
T ss_pred cEEEEEeeccccC---CCCCCCCCEEEEEEEECCCC
Confidence 4667865554221 14689999999999887654
No 34
>PRK15463 cold shock-like protein CspF; Provisional
Probab=21.95 E-value=2.2e+02 Score=19.44 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=22.6
Q ss_pred CEEEEEEEEecCCcccccccCCCCEEEEEEcchhhh
Q 025098 78 GIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRK 113 (258)
Q Consensus 78 ~~i~H~~~~~~~~~~~~~~~~~g~~V~~~iD~~rR~ 113 (258)
+..+|+-.+.... ...|.+|+.|+..+...+|-
T Consensus 29 DvFvH~sal~~~g---~~~l~~G~~V~f~v~~~~~G 61 (70)
T PRK15463 29 DVQVHISALNLRD---AEELTTGLRVEFCRINGLRG 61 (70)
T ss_pred cEEEEehhhhhcC---CCCCCCCCEEEEEEEECCCC
Confidence 4678864443211 24689999999999887764
No 35
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=20.53 E-value=3e+02 Score=18.99 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=22.9
Q ss_pred CEEEEEEEEecCCcccccccCCCCEEEEEEcchhhh
Q 025098 78 GIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRK 113 (258)
Q Consensus 78 ~~i~H~~~~~~~~~~~~~~~~~g~~V~~~iD~~rR~ 113 (258)
+..+|+-.+.... ...|.+|+.|+..+-..+|-
T Consensus 26 dVFvH~s~i~~~g---~~~l~~G~~V~f~~~~~~~G 58 (74)
T PRK09937 26 DIFAHYSTIQMDG---YRTLKAGQSVQFDVHQGPKG 58 (74)
T ss_pred cEEEEEeeccccC---CCCCCCCCEEEEEEEECCCC
Confidence 4678875554321 24689999999999877664
No 36
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=20.46 E-value=2.8e+02 Score=18.70 Aligned_cols=33 Identities=15% Similarity=0.435 Sum_probs=21.9
Q ss_pred CEEEEEEEEecCCcccccccCCCCEEEEEEcchhhh
Q 025098 78 GIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRK 113 (258)
Q Consensus 78 ~~i~H~~~~~~~~~~~~~~~~~g~~V~~~iD~~rR~ 113 (258)
+..+|+-.+.... ...|.+|+.|+..+-..+|-
T Consensus 28 dvfvH~s~l~~~g---~~~l~~G~~V~f~~~~~~~G 60 (69)
T PRK09507 28 DVFVHFSAIQTNG---FKTLAEGQRVEFEITNGAKG 60 (69)
T ss_pred eEEEEeecccccC---CCCCCCCCEEEEEEEECCCC
Confidence 4567764443211 14689999999999887654
No 37
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=20.22 E-value=3e+02 Score=18.91 Aligned_cols=10 Identities=20% Similarity=0.385 Sum_probs=4.8
Q ss_pred cccCCCCEEE
Q 025098 95 MELEKGKEVR 104 (258)
Q Consensus 95 ~~~~~g~~V~ 104 (258)
+.+++|++|.
T Consensus 24 G~i~~G~~v~ 33 (82)
T cd04089 24 GTIKKGDKLL 33 (82)
T ss_pred eEEecCCEEE
Confidence 3445555544
Done!