Query 025098
Match_columns 258
No_of_seqs 171 out of 1306
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 03:43:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025098.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025098hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kew_A DHHA1 domain protein; s 100.0 1E-63 3.5E-68 429.3 22.2 226 7-258 1-229 (241)
2 2e1b_A PH0108, 216AA long hypo 100.0 3.3E-59 1.1E-63 395.5 14.4 207 7-256 4-215 (216)
3 2zze_A Alanyl-tRNA synthetase; 100.0 1.5E-55 5.2E-60 424.6 24.5 234 5-258 513-752 (752)
4 2ztg_A Alanyl-tRNA synthetase; 100.0 1.4E-53 4.8E-58 410.8 25.1 231 5-258 501-738 (739)
5 1v4p_A Alanyl-tRNA synthetase; 100.0 2.4E-30 8.1E-35 208.5 11.9 141 114-258 4-152 (157)
6 1tke_A Threonyl-tRNA synthetas 99.9 1E-27 3.5E-32 203.8 12.3 165 75-256 39-222 (224)
7 1nyr_A Threonyl-tRNA synthetas 99.9 1.7E-24 5.8E-29 209.6 10.5 167 75-257 41-222 (645)
8 1qf6_A THRRS, threonyl-tRNA sy 99.9 3.3E-24 1.1E-28 207.2 11.9 154 75-245 39-203 (642)
9 1kzl_A Riboflavin synthase; bi 50.6 68 0.0023 25.9 7.9 87 20-114 104-191 (208)
10 3a35_A Lumazine protein, LUMP; 43.1 98 0.0033 24.6 7.7 85 20-113 103-189 (190)
11 1vje_A Autoinducer-2 productio 40.7 41 0.0014 26.2 4.8 60 114-178 52-112 (166)
12 1j6x_A Autoinducer-2 productio 28.8 83 0.0028 24.3 4.8 59 114-177 50-109 (160)
13 1j6w_A Autoinducer-2 productio 27.1 88 0.003 24.5 4.7 59 114-177 49-112 (175)
14 1j98_A Autoinducer-2 productio 23.1 1E+02 0.0036 23.7 4.4 59 114-177 49-113 (157)
No 1
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=1e-63 Score=429.29 Aligned_cols=226 Identities=26% Similarity=0.339 Sum_probs=198.9
Q ss_pred cc-eeceeccccceEeeeEEEEEEecCCCeEEEEEcCccccCCCCCCCCCeEEEEecCCCeEEEEEEEEEeCCEEEEEEE
Q 025098 7 PT-KLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGV 85 (258)
Q Consensus 7 ~t-~~ly~~~~y~~~~~a~V~~v~~~~~~~~~ivld~T~Fype~GGQ~~D~G~i~~~~~~~~~~V~~v~~~~~~i~H~~~ 85 (258)
|| ++|||+|||+++++|+|+++.. .++.++|+||+|||||||||||+|+|+|. + +.|.+|++.+|.++|++
T Consensus 1 mT~~~ly~~d~y~~~~~a~V~~~~~-~~~~~~vvLd~T~FYpegGGQ~~D~G~i~----~--~~V~~v~~~~g~i~H~~- 72 (241)
T 3kew_A 1 MSLTKLYYEDQYIKEFKGEIIEVKE-IDGKFHVLLDQTAFFPGGGGQMGDLGLID----G--IKVLDVYEEEGKVYHVL- 72 (241)
T ss_dssp --CEEGGGTCTTCCEEEECEEEEEE-ETTEEEEEESEECCCCCBTTBCCCCEEET----T--EEEEEEEEETTEEEEEE-
T ss_pred CcchhhhhhCcccceeEEEEEEEEe-cCCeEEEEEeCCcccCCCCCCCCCEEEEe----e--EEEEEEEEeCCEEEEEE-
Confidence 46 9999999999999999999996 45568999999999999999999999994 3 55999999999999974
Q ss_pred EecCCcccccccCCCCEEEEEEcchhhhhhhhcccHHHHHHHHHHHh-CCCcccCCccccC-CCCceEeecCCCCHHHHh
Q 025098 86 VENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQKV-GLGHLEPGKGYHF-PDGPYVEYKGSVPQNELQ 163 (258)
Q Consensus 86 ~~~~~~~~~~~~~~g~~V~~~iD~~rR~~~~~~HTa~HlL~~al~~~-~~~~~~~~~g~~~-~~~~~~d~~~~~~~~~l~ 163 (258)
. +++.+|++|.+.|||+||+++|++|||+|||++|++++ +.. ..|+++ ++++|+||...++++++.
T Consensus 73 -~-------~~l~~g~~V~~~vD~~rR~~~~~~HTa~HLL~~al~~~~g~~----~~G~~v~~~~~r~Df~~~lt~e~l~ 140 (241)
T 3kew_A 73 -E-------KEPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGAN----TCGFHLGKEISTVDIVGFLDEKTIR 140 (241)
T ss_dssp -S-------SCCCCCSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCC----EEEEEECSSCEEEEEESCCCHHHHH
T ss_pred -C-------CcCCCCCEEEEEECHHHhhhHHHHHHHHHHHHHHHHHHCCCC----eEeccccCCeEEEEECCCCCHHHHH
Confidence 2 46789999999999999999999999999999999875 542 257766 578999999889999988
Q ss_pred hhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCCCCCCCCCCCCcEEEEECCCCCcCccccccccccccccEEEEEE
Q 025098 164 SKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI 243 (258)
Q Consensus 164 ~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~~~~~~~~~~vRvv~ig~~~~~~CgGtHV~~T~eIg~~~I~~~ 243 (258)
+ ||++||++|++|+||++.+++++||++++..++++ ++++.||+|+||++|.+|||||||+|||+||.|+|++.
T Consensus 141 ~----IE~~vn~~I~~~~pV~~~~~~~~eA~~~~~~~~~e--~~~~~VRvv~ig~~~~~~CgGtHV~~TgeIg~fkI~~~ 214 (241)
T 3kew_A 141 E----AEKEANRLIFENLEVKSYAPSKKELKKVKTRRALP--KTDEEIRIVEIVGLDLNACCGVHPRNTRDLQVIKIRRW 214 (241)
T ss_dssp H----HHHHHHHHHHHTCBEEEECCCTTTTTTCCCSSCCC--CCSSCCCEEEETTTEEEECCSCCCSBSGGGCCEEEEEE
T ss_pred H----HHHHHHHHHHcCCCEEEEEcCHHHHHhcChhhcCC--ccCCcEEEEEECCeEEEcCCCCCcCCHhhcCCEEEEEE
Confidence 7 99999999999999999999999999875333321 14678999999999999999999999999999999999
Q ss_pred EEeCCEEEEEEEecC
Q 025098 244 RTKKGTTKVFYSVGS 258 (258)
Q Consensus 244 ~~~~~~~Ri~~~~~~ 258 (258)
++.++.+||+|.+|.
T Consensus 215 ~~~~~~~RI~~~~G~ 229 (241)
T 3kew_A 215 EKHKNATRIEYVAGN 229 (241)
T ss_dssp EEETTEEEEEEEEGG
T ss_pred eccCCcEEEEEEECH
Confidence 988888999999984
No 2
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=100.00 E-value=3.3e-59 Score=395.51 Aligned_cols=207 Identities=27% Similarity=0.371 Sum_probs=177.6
Q ss_pred cceeceeccccceEeeeEEEEEEecCCCeEEEEEcCccccCCCCCCCCCeEEEEecCCCeEEEEEEEEEe-CCEEEEEEE
Q 025098 7 PTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSK-DGIVFHYGV 85 (258)
Q Consensus 7 ~t~~ly~~~~y~~~~~a~V~~v~~~~~~~~~ivld~T~Fype~GGQ~~D~G~i~~~~~~~~~~V~~v~~~-~~~i~H~~~ 85 (258)
||+++||+|||+++++|+|+++.. .+|+||+|||||||||||+|+|+|. + |.|.+|++. +|.++|++.
T Consensus 4 ~t~~ly~~d~y~~~~~a~V~~~~~-----~~vvld~T~Fype~GGQ~~D~G~i~----~--~~V~~v~~~~~~~i~H~~~ 72 (216)
T 2e1b_A 4 MTRKLYYEDAYLKEAKGRVLEIRD-----NAILLDQTIFYPTGGGQPHDRGTIN----G--VEVLDVYKDEEGNVWHVVK 72 (216)
T ss_dssp SCCCSTTSCTTCCEEEECBCCCCS-----SCCCBSCCCSCCCCTTCCCCCEEET----T--EEEEEEECCTTCCCEEEES
T ss_pred hhHHHHhhCcccceeeEEEEEEeC-----CEEEEeCCCccCCCCCCCCCEEEEc----c--EEEEEEEECcCCEEEEEEc
Confidence 699999999999999999999842 2799999999999999999999994 3 569999997 899999853
Q ss_pred EecCCcccccccCCCCEEEEEEcchhhhhhhhcccHHHHHHHHHHHh-CCCcccCCccccCCCCceEeec--CCCCHHHH
Q 025098 86 VENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQKV-GLGHLEPGKGYHFPDGPYVEYK--GSVPQNEL 162 (258)
Q Consensus 86 ~~~~~~~~~~~~~~g~~V~~~iD~~rR~~~~~~HTa~HlL~~al~~~-~~~~~~~~~g~~~~~~~~~d~~--~~~~~~~l 162 (258)
. .+++.+|++|.+.|||+||+++|++|||+|||++|++++ |..++....+...++++|+||. ..++++ +
T Consensus 73 ~-------~~~l~~g~~v~~~vD~~rR~~~~~~HTA~HlL~~Al~~~~g~~~~~~~g~~v~~~~~r~Df~~~~~lt~e-l 144 (216)
T 2e1b_A 73 E-------PEKFKVGDEVELKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPENLNKY-K 144 (216)
T ss_dssp C-------GGGCCSSSCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCEEEECCBCSSEEEEEEECSSCGGGG-H
T ss_pred c-------CCCcCCCCEEEEEECHHHHHHHHHHhHHHHHHHHHHHHHcCCccceeeeeeEcCCcEEEEEeCCCCCCHH-H
Confidence 1 246789999999999999999999999999999999875 4310223333444788999995 346664 6
Q ss_pred hhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCCCCCCCCCCCCcEEEEECCCCCcCccccccccccccccEEEEE
Q 025098 163 QSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQ 242 (258)
Q Consensus 163 ~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~~~~~~~~~~vRvv~ig~~~~~~CgGtHV~~T~eIg~~~I~~ 242 (258)
.+ ||++||++|++++||.+.++++ +|+|+||++|.+|||||||+|||+||.|+|++
T Consensus 145 ~~----IE~~vn~~I~~~~pv~~~~~~~--------------------vRvv~ig~~~~~~CgGtHV~~TgeIg~fkI~~ 200 (216)
T 2e1b_A 145 EQ----IISLFNKYVDEGGEVKIWWEGD--------------------RRYTQIRDFEVIPCGGTHVKDIKEIGHIKKLK 200 (216)
T ss_dssp HH----HHHHHHHHHHHCCBEEEEESSS--------------------CEEEEETTSCEECCCSCCCSBGGGTCCEEEEE
T ss_pred HH----HHHHHHHHHhcCCCEEEEEcCC--------------------EEEEEECCEEEECCCCCCcccHhhCceEEEEE
Confidence 65 9999999999999999988662 89999999999999999999999999999999
Q ss_pred EEE-eCCEEEEEEEe
Q 025098 243 IRT-KKGTTKVFYSV 256 (258)
Q Consensus 243 ~~~-~~~~~Ri~~~~ 256 (258)
.++ ++|..||+|.+
T Consensus 201 ~~~~~~g~rRi~~~l 215 (216)
T 2e1b_A 201 RSSIGRGKQRLEMWL 215 (216)
T ss_dssp EEEEETTEEEEEEEE
T ss_pred EeEEcCCEEEEEEEE
Confidence 886 56889999987
No 3
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=100.00 E-value=1.5e-55 Score=424.64 Aligned_cols=234 Identities=24% Similarity=0.376 Sum_probs=203.8
Q ss_pred CCcceeceeccccceEeeeEEEEEEecCCCeEEEEEcCccccCCCCCCCCCeEEEEecCCCeEEEEEEEEEeCCEEEEEE
Q 025098 5 VIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYG 84 (258)
Q Consensus 5 ~~~t~~ly~~~~y~~~~~a~V~~v~~~~~~~~~ivld~T~Fype~GGQ~~D~G~i~~~~~~~~~~V~~v~~~~~~i~H~~ 84 (258)
.++|+.+||++||+++++|+|+++.. .+|+||+|||||||||||+|+|+|..+ +..|.|.+|++.+|.++|++
T Consensus 513 ~~~T~~l~Y~~~yl~~~~a~Vl~i~~-----~~VVLD~TpFYpEgGGQ~~D~G~I~~~--g~~~~V~dv~k~~g~ivH~~ 585 (752)
T 2zze_A 513 LPDTRRLYYEDPFMXEFDAXVLRVIX-----DWVILDATAFYPEGGGQPYDTGVLIVN--GREVXVTNVQXVGXVIIHXV 585 (752)
T ss_dssp SCCCEEHHHHCTTCCEEEEEEEEEET-----TEEEESEECSCCSBTTBCCCCEEEEET--TEEEEEEEEEEETTEEEEEE
T ss_pred CCCceeecccCCccceEEEEEEEEEc-----CEEEEeCCCCCCCCCCCCCCEEEEEeC--CEEEEEEeeeecCcEEEEec
Confidence 47899999999999999999999984 589999999999999999999999874 34577999999999999975
Q ss_pred EEecCCcccccccCCCCEEEEEEcchhhhhhhhcccHHHHHHHHHHHh-CCCcccCCccccC-CCCceEeec--CCCCHH
Q 025098 85 VVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQKV-GLGHLEPGKGYHF-PDGPYVEYK--GSVPQN 160 (258)
Q Consensus 85 ~~~~~~~~~~~~~~~g~~V~~~iD~~rR~~~~~~HTa~HlL~~al~~~-~~~~~~~~~g~~~-~~~~~~d~~--~~~~~~ 160 (258)
.. .+.+.+|++|++.|||+||+.+|++|||+|||++||+++ |. ++ .+.|+++ ++++|+||. ..++++
T Consensus 586 ~~-------~~~l~vGd~V~~~VD~~rR~~~mr~HTAtHLL~~ALr~vlG~-~v-~q~Gs~v~~d~~rfDFs~~~~lt~e 656 (752)
T 2zze_A 586 ED-------PGAFXEGMIVHGXIDWXRRIQHMRHHTGTHVLMGALVRVLGR-HV-WQAGSQLTTDWARLDISHYXRISEE 656 (752)
T ss_dssp SC-------GGGCCTTCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCT-TC-EEEEEEECSSCEEEEEECSSCCCHH
T ss_pred cc-------cCccCcCCeEEEEEeHHHHHHHHHHhHHHHHHHHHHHHHcCC-ce-eeecCcccCCceEEEEeCCCCCCHH
Confidence 32 246789999999999999999999999999999999986 43 22 2356665 778999985 578999
Q ss_pred HHhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCCCC-CCCCCCCCcEEEEECCCCCcCccccccccccccccEE
Q 025098 161 ELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLP-HYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMK 239 (258)
Q Consensus 161 ~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~~-~~~~~~~~vRvv~ig~~~~~~CgGtHV~~T~eIg~~~ 239 (258)
+|.+ ||++||++|++++||.+.+++++||.+.++..+. ...++++.||||+||++|.++||||||+|||+||.|+
T Consensus 657 dL~~----IE~~vNeiI~~nlpV~~~~~s~eEA~~~~~~~lf~~ge~ygd~VRVV~IGd~svelCGGTHV~nTgeIG~fK 732 (752)
T 2zze_A 657 ELXE----IEMLANRIVMEDRXVTWEWLPRTTAEQXYGFRLYQGGVVPGREIRVVXIEDWDVQACGGTHLPSTGLVGPIX 732 (752)
T ss_dssp HHHH----HHHHHHHHHHHTCBEEEEEEEHHHHHHHHCGGGCSSCCCCSSEEEEEEETTTEEEECCSCCCSBGGGGCCEE
T ss_pred HHHH----HHHHHHHHHHhCCccceeecCHHHHhhcchhhhhcCCCCCCCeEEEEEECCceeCCCCCCccCCHhHccEEE
Confidence 8887 9999999999999999999999999998653322 2234567899999999999999999999999999999
Q ss_pred EEEEEE-eCCEEEEEEEecC
Q 025098 240 VSQIRT-KKGTTKVFYSVGS 258 (258)
Q Consensus 240 I~~~~~-~~~~~Ri~~~~~~ 258 (258)
|++.++ ++|..||+|.+|.
T Consensus 733 Ils~s~i~~GvrRIeavtG~ 752 (752)
T 2zze_A 733 ILRTERIQDGVERIIFACGE 752 (752)
T ss_dssp EEEEEEEETTEEEEEEEECC
T ss_pred EEEEEEEcCCEEEEEEEeCC
Confidence 999976 6899999999984
No 4
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.4e-53 Score=410.85 Aligned_cols=231 Identities=29% Similarity=0.384 Sum_probs=200.1
Q ss_pred CCcceeceeccccceEeeeEEEEEEecCCCeEEEEEcCccccCCCCCCCCCeEEEEecCCCeEEEEEEEEEeCCEEEEEE
Q 025098 5 VIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYG 84 (258)
Q Consensus 5 ~~~t~~ly~~~~y~~~~~a~V~~v~~~~~~~~~ivld~T~Fype~GGQ~~D~G~i~~~~~~~~~~V~~v~~~~~~i~H~~ 84 (258)
.++|+.+||++||+++++|+|+++.. .+|+||+|||||||||||+|+|+|..+ +..|.|.+|++.+|.++|++
T Consensus 501 ~~~T~~l~Y~~~y~~~~~a~Vl~i~~-----~~VVLD~TpFYpEgGGQ~~D~G~I~~~--g~~~~V~dv~k~~g~ivH~~ 573 (739)
T 2ztg_A 501 YPATEKLYYDDPTLLEFEAEVIGVEG-----DFVILNRSAFYPESGGQDNDVGYLIAN--GGKFEVVDVLEADGVVLHVV 573 (739)
T ss_dssp CCCCEECTTTCTTCCEEEEEEEEEET-----TEEEESEECCCCSBTTBCCCCEEEEET--TEEEEECEEEEETTEEEEEC
T ss_pred CCCceeecccCCcccEEEEEEEEEEc-----CEEEEeCCCCCCCCCCCCCCEEEEEEC--CEEEEEEEEEEECCEEEEEE
Confidence 57899999999999999999999984 589999999999999999999999874 34577999999999999974
Q ss_pred EEecCCccccccc-CCCCEEEEEEcchhhhhhhhcccHHHHHHHHHHHh-CCCcccCCccccC-CCCceEeec--CCCCH
Q 025098 85 VVENSGGEFEMEL-EKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQKV-GLGHLEPGKGYHF-PDGPYVEYK--GSVPQ 159 (258)
Q Consensus 85 ~~~~~~~~~~~~~-~~g~~V~~~iD~~rR~~~~~~HTa~HlL~~al~~~-~~~~~~~~~g~~~-~~~~~~d~~--~~~~~ 159 (258)
. +.+ .+|++|++.|||+||+.+|++|||+|||++|++++ |. ++. +.|+++ ++++|+||. ..+++
T Consensus 574 ~---------~~~~~~Gd~V~~~VD~~rR~~~m~~HTAtHLL~~ALr~vlG~-~v~-q~GS~v~~d~~r~DF~~~~~lT~ 642 (739)
T 2ztg_A 574 K---------GAKPEVGTKVKGVIDSDVRWRHMRHHSATHVLLYSLQKVLGN-HVW-QAGARKEFSKARLDVTHFRRPSE 642 (739)
T ss_dssp C---------SSCCCTTCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCT-TCC-EEECCSCCSSCEEEEECSSCCCH
T ss_pred c---------ccCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHhcCC-cEE-ecCcEEcCCcEEEEEeCCCCCCH
Confidence 2 233 68999999999999999999999999999999986 43 333 245544 678999985 57999
Q ss_pred HHHhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCCCCC-CCCCCCCcEEEEECCCCCcCccccccccccccccE
Q 025098 160 NELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPH-YIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISM 238 (258)
Q Consensus 160 ~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~~~-~~~~~~~vRvv~ig~~~~~~CgGtHV~~T~eIg~~ 238 (258)
+++.+ ||++||++|++++||.+.+++++||.++++..+.. ..++++.||||+||+ +.++||||||+|||+||.|
T Consensus 643 edL~~----IE~~vNeiI~~nlpV~~~~~s~eEA~~~~~l~L~~~~~~~~d~VRVV~IGd-~~elCGGTHV~nTgeIg~f 717 (739)
T 2ztg_A 643 EEIKE----IEMLANREILANKPIKWEWMDRIEAERKFGFRLYQGGVPPGRKIRVVQVGD-DVQACGGTHCRSTGEIGML 717 (739)
T ss_dssp HHHHH----HHHHHHHHHHTTCBEEEEEEEHHHHHHHHCGGGGTTCCCCSSEEEEEEETT-EEEECCSCCCSBGGGGCCE
T ss_pred HHHHH----HHHHHHHHHHcCCCEEEEEeCHHHHHHhCCHhhhcCCCCCCCeEEEEEECC-eeeCcCCcCcccHhHcCcE
Confidence 98887 99999999999999999999999999987533321 345567899999999 7999999999999999999
Q ss_pred EEEEEEE-eCCEEEEEEEecC
Q 025098 239 KVSQIRT-KKGTTKVFYSVGS 258 (258)
Q Consensus 239 ~I~~~~~-~~~~~Ri~~~~~~ 258 (258)
+|++.++ ++|..||+|.+|.
T Consensus 718 kIls~s~i~~GvrRIeavtG~ 738 (739)
T 2ztg_A 718 KILKVESIQDGVIRFEFAAGE 738 (739)
T ss_dssp EEEEEEEEETTEEEEEEEESC
T ss_pred EEEEEeEEcCCEEEEEEEecC
Confidence 9999976 6899999999984
No 5
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Probab=99.97 E-value=2.4e-30 Score=208.48 Aligned_cols=141 Identities=20% Similarity=0.252 Sum_probs=113.6
Q ss_pred hhhhcccHHHHHHHHHHHhCCCcccCCccccCCC-CceEee--cCCCCHHHHhhhHHHHHHHHHHHHHcCCceEEEEcCH
Q 025098 114 LNSRLHSAGHLLDVCMQKVGLGHLEPGKGYHFPD-GPYVEY--KGSVPQNELQSKTKELELEANALISRGGKVMVAVLPY 190 (258)
Q Consensus 114 ~~~~~HTa~HlL~~al~~~~~~~~~~~~g~~~~~-~~~~d~--~~~~~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~ 190 (258)
..|++|||+|||++|++++...+..+..++.+.+ ++|++| ...++++++.+ ||++||++|++++||.+.++++
T Consensus 4 ~~~~~HSa~HlL~~Al~~~~~~~~~~~~~~~i~~~~~~~~~d~~~~~t~e~l~~----IE~~~n~~I~~~~pi~~~~~~~ 79 (157)
T 1v4p_A 4 IEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIRE----IERLANEKVKENAPIKIYELPR 79 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEETTEEEEEEECSSCCCHHHHHH----HHHHHHHHHHHTCBCEEEEEEH
T ss_pred hHHHhHHHHHHHHHHHHHHhCCCcEEecCceecCCCcEEEEEeCCCCCHHHHHH----HHHHHHHHHHcCCCEEEEEeCH
Confidence 4699999999999999986221233344555544 677666 46799998887 9999999999999999999999
Q ss_pred HHHhhhcCCCCCCC--CCCC-CCcEEEEECCCCCcCccccccccccccccEEEEEEEE--eCCEEEEEEEecC
Q 025098 191 EEASMLCGGCLPHY--IPQG-STPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRT--KKGTTKVFYSVGS 258 (258)
Q Consensus 191 ~ea~~~~~~~~~~~--~~~~-~~vRvv~ig~~~~~~CgGtHV~~T~eIg~~~I~~~~~--~~~~~Ri~~~~~~ 258 (258)
+||.++|+..+.+. ++.+ +.||+|+||++|.++||||||+|||+||.|+|++.+. +++..||+|.++|
T Consensus 80 ~eA~~~f~~~~~~~~~~~~~~~~vrv~~ig~~~~~~C~GtHv~~Tg~I~~fki~~~~~~~~~~~l~v~~~v~~ 152 (157)
T 1v4p_A 80 EEAEKMFGEDMYDLFPVPEDVRILKVVVIEDWNVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEIHFELLE 152 (157)
T ss_dssp HHHHHHHGGGGSCSSCCCTTCCEEEEEEETTTEEEECCSCCCSBGGGTCCEEEEEEEEETTTTEEEEEEEEC-
T ss_pred HHHHHhhCccccccccCCCCCCeEEEEEECCeeEeCCCCCccCChhhcceEEEEEEEecCCCcEEEEEEEEee
Confidence 99999876432211 2332 5799999999999999999999999999999999875 5678999999875
No 6
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=99.95 E-value=1e-27 Score=203.83 Aligned_cols=165 Identities=16% Similarity=0.238 Sum_probs=131.1
Q ss_pred EeCCEEEEEEEEecCCcccccccCCCCEEEEEEcchhh-hhhhhcccHHHHHHHHHHHhCCCcccCCccccCCCCceEee
Q 025098 75 SKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRR-KLNSRLHSAGHLLDVCMQKVGLGHLEPGKGYHFPDGPYVEY 153 (258)
Q Consensus 75 ~~~~~i~H~~~~~~~~~~~~~~~~~g~~V~~~iD~~rR-~~~~~~HTa~HlL~~al~~~~~~~~~~~~g~~~~~~~~~d~ 153 (258)
+.||.++++ ..++..|+.|+. |+++.+ -..|++|||+|||++|++++. +......|+++++|+|+||
T Consensus 39 kvNg~l~dL----------~~~l~~~~~ve~-it~~~~~g~~~~~HS~~HlL~~A~~~~~-~~~~~~~g~~~~~g~y~d~ 106 (224)
T 1tke_A 39 RVNGELVDA----------CDLIENDAQLSI-ITAKDEEGLEIIRHSCAHLLGHAIKQLW-PHTKMAIGPVIDNGFYYDV 106 (224)
T ss_dssp EETTEEEET----------TCCBCSCEEEEE-ECTTSHHHHHHHHHHHHHHHHHHHHHHS-TTCEECCCCEETTEEEEEE
T ss_pred EECCEEecc----------ceEcCCCCeEEE-EecCchhHHHHHHHHHHHHHHHHHHHHC-CCcEEEECCccCCeEEEEE
Confidence 357877762 246777888885 777666 489999999999999999872 2233345777888999998
Q ss_pred c--CCCCHHHHhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCC---CC----CCC-CCCCCCcEEEEECCCCCcC
Q 025098 154 K--GSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGG---CL----PHY-IPQGSTPRIVKLGDNPGCP 223 (258)
Q Consensus 154 ~--~~~~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~---~~----~~~-~~~~~~vRvv~ig~~~~~~ 223 (258)
. ..+++++|.+ ||++||++|++++||.+.+++++||.++|.. .+ ... .++++.||+|++|++ .++
T Consensus 107 ~~~~~~t~edl~~----IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~~~~k~~l~~~~~~~~~~v~vy~~g~~-~dl 181 (224)
T 1tke_A 107 DLDRTLTQEDVEA----LEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEY-VDM 181 (224)
T ss_dssp ECSSCCCHHHHHH----HHHHHHHHHTTCCBCEEEECCHHHHHHHHHHTTCHHHHHHHHHHSCTTCCCEEEEETTE-EEE
T ss_pred eCCCCCCHHHHHH----HHHHHHHHHhCCCCEEEEEecHHHHHHHHHHcCCchHHHHhccccCCCCeeEEEEeCCE-EEE
Confidence 5 5799999887 9999999999999999999999999998631 11 111 345678999999998 799
Q ss_pred ccccccccccccccEEEEEEEE--------eCCEEEEEEEe
Q 025098 224 CGGTHVSDISEIISMKVSQIRT--------KKGTTKVFYSV 256 (258)
Q Consensus 224 CgGtHV~~T~eIg~~~I~~~~~--------~~~~~Ri~~~~ 256 (258)
|+||||+|||+||.|+|++.+. .+-..||+-++
T Consensus 182 C~G~Hv~~Tg~i~~fkl~~~~~~yw~g~~~~~~lqRiyg~a 222 (224)
T 1tke_A 182 CRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTA 222 (224)
T ss_dssp ESCCCCSBGGGCCCEEEEEEEEEEGGGCTTSCEEEEEEEEE
T ss_pred CCCcCCCcCcccceEEEEEecceeEcCCCCCceeEEEEEec
Confidence 9999999999999999999874 11257988765
No 7
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.91 E-value=1.7e-24 Score=209.56 Aligned_cols=167 Identities=19% Similarity=0.312 Sum_probs=133.3
Q ss_pred EeCCEEEEEEEEecCCcccccccCCCCEEEEEEcchhhhhhhhcccHHHHHHHHHHHhCCCcccCCccccCCCCceEeec
Q 025098 75 SKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRLHSAGHLLDVCMQKVGLGHLEPGKGYHFPDGPYVEYK 154 (258)
Q Consensus 75 ~~~~~i~H~~~~~~~~~~~~~~~~~g~~V~~~iD~~rR~~~~~~HTa~HlL~~al~~~~~~~~~~~~g~~~~~~~~~d~~ 154 (258)
+.||.++++ ..++..+.+|+..-..+.+...+++|||+|||++|++++ ++....+.|+.+++|+|+||.
T Consensus 41 ~vng~~~dl----------~~~l~~d~~v~~~~~~~~~g~~~~~HSa~HlL~~A~~~~-~~~~~~~~g~~~~~g~~~Df~ 109 (645)
T 1nyr_A 41 KFNGQLVDL----------TKPLETDGSIEIVTPGSEEALEVLRHSTAHLMAHAIKRL-YGNVKFGVGPVIEGGFYYDFD 109 (645)
T ss_dssp EETTEEECT----------TSCCCSCBCCCEECTTSHHHHHHHHHHHHHHHHHHHHHH-SSSCEECCCCEETTEEEEEEE
T ss_pred EECCEEEeC----------CcccCCCCeEEEeeccchhHHHHHHHHHHHHHHHHHHHH-cCCcEEEECCccCCceEEEec
Confidence 357776652 245666777777656666779999999999999999987 323455678888999999985
Q ss_pred --CCCCHHHHhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCC-CC----CCCCCCCCCcEEEEECCCCCcCcccc
Q 025098 155 --GSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGG-CL----PHYIPQGSTPRIVKLGDNPGCPCGGT 227 (258)
Q Consensus 155 --~~~~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~-~~----~~~~~~~~~vRvv~ig~~~~~~CgGt 227 (258)
..++++++.+ ||++||++|++++||.+.+++++||.++|+. .+ ...++.++.||+|++|++ .++|+||
T Consensus 110 ~~~~~t~edl~~----IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~yk~~li~~~~~~~~vrv~~~g~~-~dlC~G~ 184 (645)
T 1nyr_A 110 IDQNISSDDFEQ----IEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPEDENVTLYSQGDF-TDLCRGV 184 (645)
T ss_dssp CSSCCCSTTHHH----HHHHHHHHHHTTCCEEEEECTTTHHHHHCSSCHHHHHHHCCCSSSCCCEEEEETTE-EEECCSC
T ss_pred CCCCCCHHHHHH----HHHHHHHHHHhCCCeEEEEecHHHHHHHHhhCcchHHHhhcCCCCCeeEEEEECCE-EEecCCc
Confidence 5789998887 9999999999999999999999999999862 11 123344568999999998 7999999
Q ss_pred ccccccccccEEEEEEEE--------eCCEEEEEEEec
Q 025098 228 HVSDISEIISMKVSQIRT--------KKGTTKVFYSVG 257 (258)
Q Consensus 228 HV~~T~eIg~~~I~~~~~--------~~~~~Ri~~~~~ 257 (258)
||+|||+||.|+|++.+. .....||+-++.
T Consensus 185 Hv~~Tg~i~~fkl~~~~~a~~~~~~~~~~l~ri~g~~~ 222 (645)
T 1nyr_A 185 HVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAF 222 (645)
T ss_dssp CCSCGGGCCEEEEEEEEEEETTSCSSSCEEEEEEEEEE
T ss_pred ccCCCCCCceEEEeeeCchHHHHHhHHHHHHHHHHHhc
Confidence 999999999999999862 223568876653
No 8
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=99.90 E-value=3.3e-24 Score=207.20 Aligned_cols=154 Identities=17% Similarity=0.241 Sum_probs=123.9
Q ss_pred EeCCEEEEEEEEecCCcccccccCCCCEEEEEEcch-hhhhhhhcccHHHHHHHHHHHhCCCcccCCccccCCCCceEee
Q 025098 75 SKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDES-RRKLNSRLHSAGHLLDVCMQKVGLGHLEPGKGYHFPDGPYVEY 153 (258)
Q Consensus 75 ~~~~~i~H~~~~~~~~~~~~~~~~~g~~V~~~iD~~-rR~~~~~~HTa~HlL~~al~~~~~~~~~~~~g~~~~~~~~~d~ 153 (258)
+.||.+++. ..++..+.+|+ -|+++ .+...+++|||+|||++|++++ ++....+.|+++++|+|+||
T Consensus 39 ~vng~~~dl----------~~~l~~d~~~~-~~~~~~~~~~~~~~HSa~HlL~~Al~~~-~~~~~~~~G~~i~~gfy~Df 106 (642)
T 1qf6_A 39 RVNGELVDA----------CDLIENDAQLS-IITAKDEEGLEIIRHSCAHLLGHAIKQL-WPHTKMAIGPVIDNGFYYDV 106 (642)
T ss_dssp EETTEEEET----------TSCBCSCEECC-EECTTSHHHHHHHHHHHHHHHHHHHHHH-CTTCEECCCCEETTEEEEEE
T ss_pred EECCEEecc----------ccccCCCceEE-EeecCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEECCccCCeeEEEE
Confidence 357877762 24566665666 34554 6778999999999999999987 32333467888889999998
Q ss_pred c--CCCCHHHHhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcC---CCCC-----CCCCCCCCcEEEEECCCCCcC
Q 025098 154 K--GSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCG---GCLP-----HYIPQGSTPRIVKLGDNPGCP 223 (258)
Q Consensus 154 ~--~~~~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~---~~~~-----~~~~~~~~vRvv~ig~~~~~~ 223 (258)
. ..+++++|.+ ||++||++|++++||.+.+++++||.+++. ..+. ..++.++.||+|++|++ .++
T Consensus 107 ~~~~~~t~edl~~----IE~~m~~iI~~~~~v~~~~~~~~eA~~~~~~~~e~yk~~li~~~~~~~~~v~vy~~g~~-~dl 181 (642)
T 1qf6_A 107 DLDRTLTQEDVEA----LEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEY-VDM 181 (642)
T ss_dssp ECSSCCCHHHHHH----HHHHHHHHHHHTCBEEEEECCHHHHHHHHHHHTCHHHHHHHHHHSCTTCCCEEEEETTE-EEC
T ss_pred eCCCCCCHHHHHH----HHHHHHHHHHcCCCEEEEEecHHHHHHHhhhhCCcchhhhhhcccCCCCceEEEEECCE-EEe
Confidence 5 5799999987 999999999999999999999999998863 2221 23344568999999998 699
Q ss_pred ccccccccccccccEEEEEEEE
Q 025098 224 CGGTHVSDISEIISMKVSQIRT 245 (258)
Q Consensus 224 CgGtHV~~T~eIg~~~I~~~~~ 245 (258)
|+||||+|||+||.|+|++++.
T Consensus 182 C~GpHv~~Tg~I~~fkl~~~~~ 203 (642)
T 1qf6_A 182 CRGPHVPNMRFCHHFKLMKTAG 203 (642)
T ss_dssp CSSCCCSBGGGCCSEEEEEEEE
T ss_pred cCCCccCCCCcceeEEEeeecc
Confidence 9999999999999999999876
No 9
>1kzl_A Riboflavin synthase; biosynthesis of riboflavin, ligand binding, transferase; HET: CRM; 2.10A {Schizosaccharomyces pombe} SCOP: b.43.4.3 b.43.4.3
Probab=50.63 E-value=68 Score=25.91 Aligned_cols=87 Identities=10% Similarity=0.105 Sum_probs=53.6
Q ss_pred EeeeEEEEEEecCCCeEEEEEcCccccCCCCCCCCCeEEEEecCCCeEEEEEEEEEeCCEEEEEEEEecCCc-ccccccC
Q 025098 20 QSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENSGG-EFEMELE 98 (258)
Q Consensus 20 ~~~a~V~~v~~~~~~~~~ivld~T~Fype~GGQ~~D~G~i~~~~~~~~~~V~~v~~~~~~i~H~~~~~~~~~-~~~~~~~ 98 (258)
...|+|+++.+ .++...+.+.--| |+-.-.....|.|..+ ++..+|.+|.. +..-+++ ++.... -..+..+
T Consensus 104 Dg~g~i~~~~~-~~~~~~~~~~~~p--~~l~~yiv~KGsIaid--GiSLTV~~v~~-~~F~v~l--IP~T~~~T~l~~~~ 175 (208)
T 1kzl_A 104 DTVAEIVEKKQ-DGEAIDFTFRPRD--PFVLKYIVYKGYIALD--GTSLTITHVDD-STFSIMM--ISYTQSKVIMAKKN 175 (208)
T ss_dssp CEEEEEEEEEE-ETTEEEEEEEESS--GGGGGGCCTTCEEEET--TEEEEEEEECS-SCEEEEE--CHHHHTTSGGGGCC
T ss_pred eeeeEEEEEEe-cCCcEEEEEEeCC--HHHHhhhhhCCEEEEe--eEEeEEEeEcC-CEEEEEE--ehhhHhhcccccCC
Confidence 45789999885 4444444443201 1223357889999997 56667888753 2333443 331110 0124578
Q ss_pred CCCEEEEEEcchhhhh
Q 025098 99 KGKEVRLWVDESRRKL 114 (258)
Q Consensus 99 ~g~~V~~~iD~~rR~~ 114 (258)
+|+.|.+++|.--||-
T Consensus 176 ~Gd~VNlE~D~~~kyv 191 (208)
T 1kzl_A 176 VGDLVNVEVDQIGKYT 191 (208)
T ss_dssp TTCEEEEEECTHHHHH
T ss_pred CCCEEEEeEehHHHHH
Confidence 9999999999999984
No 10
>3a35_A Lumazine protein, LUMP; luminous bacteria, homologue of riboflavin synthase, luminescent protein; HET: RBF; 1.42A {Photobacterium kishitanii} PDB: 3a3b_B* 3a3g_A*
Probab=43.11 E-value=98 Score=24.57 Aligned_cols=85 Identities=14% Similarity=0.132 Sum_probs=48.5
Q ss_pred EeeeEEEEEEecCCCeEEEEEcCccccCCCCCCCCCeEEEEecCCCeEEEEEEEEEeCCEEEEEEEEecCCc-ccccccC
Q 025098 20 QSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENSGG-EFEMELE 98 (258)
Q Consensus 20 ~~~a~V~~v~~~~~~~~~ivld~T~Fype~GGQ~~D~G~i~~~~~~~~~~V~~v~~~~~~i~H~~~~~~~~~-~~~~~~~ 98 (258)
...|+|+++.+ .++...+.+.-. ++=.-.....|.|..+ ++..+|.++.. +..-+++ ++.... -..+.++
T Consensus 103 dg~g~i~~~~~-~~~~~~~~~~~p---~~~~~yi~~KGsIavd--GvSLTV~~v~~-~~f~v~l--IP~T~~~T~l~~~~ 173 (190)
T 3a35_A 103 KGVATVDNITE-EEDRLKVYIKIP---KDLIENILSEDHIGIN--GVSHSIEEISD-DIIFINY--PKNLSITTNLGTLE 173 (190)
T ss_dssp CEEEEEEEEEE-ETTEEEEEEECC---TTSCSCCCTTSEEEET--TEEEECCEEET-TEEEEEE--ETTHHHHSGGGGCC
T ss_pred eEEEEEEEEEE-cCCeEEEEEEeC---HHHHhcCCcCCEEEEC--CEEEEEEEecC-CEEEEEE--eHHHHhhcccccCc
Confidence 46789999986 444455555431 2224467889999987 56667877752 2222332 332110 0124578
Q ss_pred CCCEEEEE-Ecchhhh
Q 025098 99 KGKEVRLW-VDESRRK 113 (258)
Q Consensus 99 ~g~~V~~~-iD~~rR~ 113 (258)
+|+.|.++ +|.--||
T Consensus 174 ~Gd~VNlE~~D~~~ky 189 (190)
T 3a35_A 174 KGSDVNVETLNVSNEW 189 (190)
T ss_dssp TTCEEEEEECC-----
T ss_pred CCCEEEEecccccccc
Confidence 99999999 9987776
No 11
>1vje_A Autoinducer-2 production protein LUXS; structural genomics, hydrolase; 1.64A {Deinococcus radiodurans} SCOP: d.185.1.2 PDB: 1vgx_A 1inn_A 1j6v_A 1vh2_A
Probab=40.65 E-value=41 Score=26.22 Aligned_cols=60 Identities=18% Similarity=0.232 Sum_probs=38.3
Q ss_pred hhhhcccHHHHHHHHHHHhCCCcccCC-ccccCCCCceEeecCCCCHHHHhhhHHHHHHHHHHHHH
Q 025098 114 LNSRLHSAGHLLDVCMQKVGLGHLEPG-KGYHFPDGPYVEYKGSVPQNELQSKTKELELEANALIS 178 (258)
Q Consensus 114 ~~~~~HTa~HlL~~al~~~~~~~~~~~-~g~~~~~~~~~d~~~~~~~~~l~~~~~~IE~~~n~~I~ 178 (258)
...-.||..||++..++...-+-+-.+ .|+- -|||+-.-+..+.+++.+ .+++.++.++.
T Consensus 52 ~~~~iHTlEHL~A~~lRnh~~~iId~sPMGCr--TGFYlil~G~~~~~~v~~---~~~~~l~~Il~ 112 (166)
T 1vje_A 52 DPAAIHTLEHLLAGYMRDHLEGVVDVSPMGAR--TGMYMAVIGEPDEQGVMK---AFEAALKDTAG 112 (166)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTEEEEEECTTS--SEEEEEEESSCCHHHHHH---HHHHHHHHHHT
T ss_pred CCcchhHHHHHHHHHHhcCCCCeEEECCcccc--cccEEEEeCCCCHHHHHH---HHHHHHHHHHh
Confidence 346789999999999987521111110 2332 368887777788877644 46666766664
No 12
>1j6x_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling protein; 2.38A {Helicobacter pylori} SCOP: d.185.1.2
Probab=28.82 E-value=83 Score=24.31 Aligned_cols=59 Identities=19% Similarity=0.171 Sum_probs=37.5
Q ss_pred hhhhcccHHHHHHHHHHHhCCCcccCC-ccccCCCCceEeecCCCCHHHHhhhHHHHHHHHHHHH
Q 025098 114 LNSRLHSAGHLLDVCMQKVGLGHLEPG-KGYHFPDGPYVEYKGSVPQNELQSKTKELELEANALI 177 (258)
Q Consensus 114 ~~~~~HTa~HlL~~al~~~~~~~~~~~-~g~~~~~~~~~d~~~~~~~~~l~~~~~~IE~~~n~~I 177 (258)
...-.||..||++..++...-+-+-.+ .|+- -|||+-.-+..+.+++.+ .+++.++.++
T Consensus 50 ~~~~iHTlEHL~A~~lRnh~~~iId~sPMGCr--TGFYlil~G~~~~~~v~~---~~~~~l~~Il 109 (160)
T 1j6x_A 50 DMPSLHSLEHLVAEIIRNHANYVVDWSPMGCQ--TGFYLTVLNHDNYTEILE---VLEKTMQDVL 109 (160)
T ss_dssp CHHHHHHHHHHHHHHHHHHCSCEEEEEECTTS--SEEEEEEESCCCHHHHHH---HHHHHHHHHT
T ss_pred CCcchhHHHHHHHHHHhhCCCCeEEECCcCcc--hhcEEEEeCCCCHHHHHH---HHHHHHHHHH
Confidence 356789999999999987521111110 2332 368887777788877644 4666666655
No 13
>1j6w_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling protein; 2.10A {Haemophilus influenzae} SCOP: d.185.1.2 PDB: 1joe_A
Probab=27.14 E-value=88 Score=24.55 Aligned_cols=59 Identities=15% Similarity=0.243 Sum_probs=37.2
Q ss_pred hhhhcccHHHHHHHHHHHh-CCCcccC-C---ccccCCCCceEeecCCCCHHHHhhhHHHHHHHHHHHH
Q 025098 114 LNSRLHSAGHLLDVCMQKV-GLGHLEP-G---KGYHFPDGPYVEYKGSVPQNELQSKTKELELEANALI 177 (258)
Q Consensus 114 ~~~~~HTa~HlL~~al~~~-~~~~~~~-~---~g~~~~~~~~~d~~~~~~~~~l~~~~~~IE~~~n~~I 177 (258)
...-.||..||++..+|.. .....+. - .|+- -|||+-.-+..+.+++.+ .+++.++.++
T Consensus 49 ~~~~iHTlEHL~A~~lRnh~~~~~~~iId~sPMGCr--TGFYlil~G~~~~~~v~~---~~~~~l~~Il 112 (175)
T 1j6w_A 49 SPKGIHTLEHLFAGFMRDHLNGDSIEIIDISPMGCR--TGFYMSLIGTPNEQKVSE---AWLASMQDVL 112 (175)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCBTTBEEEEEEECTTS--SEEEEEEESCCCHHHHHH---HHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHhhCccCCCCeEEEeCCcCcc--cccEEEEeCCCCHHHHHH---HHHHHHHHHH
Confidence 3467899999999999874 1101111 0 2332 368887777788877644 4666666665
No 14
>1j98_A Autoinducer-2 production protein LUXS; autoinducer synthesis, signaling protein; 1.20A {Bacillus subtilis} SCOP: d.185.1.2 PDB: 1jqw_A 1jvi_A* 1ie0_A 2fqo_A* 2fqt_A* 1ycl_A*
Probab=23.14 E-value=1e+02 Score=23.68 Aligned_cols=59 Identities=20% Similarity=0.292 Sum_probs=36.5
Q ss_pred hhhhcccHHHHHHHHHHHh-CC-CcccCC----ccccCCCCceEeecCCCCHHHHhhhHHHHHHHHHHHH
Q 025098 114 LNSRLHSAGHLLDVCMQKV-GL-GHLEPG----KGYHFPDGPYVEYKGSVPQNELQSKTKELELEANALI 177 (258)
Q Consensus 114 ~~~~~HTa~HlL~~al~~~-~~-~~~~~~----~g~~~~~~~~~d~~~~~~~~~l~~~~~~IE~~~n~~I 177 (258)
...-.||..||++..++.. .+ +..... .|+ .-|||+-.-+..+.+++.+ .+++.++.++
T Consensus 49 ~~~~iHTlEHL~A~~lRnh~~~~~~~~iId~sPMGC--rTGFYl~l~G~~~~~~v~~---~~~~~l~~il 113 (157)
T 1j98_A 49 KPDTIHTLEHLLAFTIRSHAEKYDHFDIIDISPMGC--QTGYYLVVSGETTSAEIVD---LLEDTMKEAV 113 (157)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCSSEEEEEEEECTT--SSEEEEEEEECCCHHHHHH---HHHHHHHHHT
T ss_pred CcccchHHHHHHHHHHhcCccccCCCCEEEeCCcCc--ccccEEEEeCCCCHHHHHH---HHHHHHHHHH
Confidence 3567899999999999874 21 111110 222 2368887767778777644 3666666655
Done!