BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025100
(258 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BCC|E Chain E, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|E Chain E, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|E Chain E, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 196
Score = 219 bits (558), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 95/179 (53%), Positives = 130/179 (72%)
Query: 80 DEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVD 139
D+Y+ + DPS++ F+Y V A + ++ +FV SMSAS DVLAM+ +E+
Sbjct: 18 DDYSTKSSRESDPSRKGFSYLVTAVTTLGVAYAAKNVVTQFVSSMSASADVLAMSKIEIK 77
Query: 140 LSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVG 199
LS I G + KWRGKP+F+R RT+++I +V++ LRDPQ D ERVK PEW++++G
Sbjct: 78 LSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIG 137
Query: 200 VCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 258
VCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIRKGPAP NLEVPSY F ++ +++G
Sbjct: 138 VCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPSYEFTSDDMVIVG 196
>pdb|1EZV|E Chain E, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|E Chain E, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|P Chain P, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KB9|E Chain E, Yeast Cytochrome Bc1 Complex
pdb|1P84|E Chain E, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
pdb|2IBZ|E Chain E, Yeast Cytochrome Bc1 Complex With Stigmatellin
pdb|3CX5|E Chain E, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|P Chain P, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|E Chain E, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|P Chain P, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 185
Score = 219 bits (557), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 95/164 (57%), Positives = 132/164 (80%), Gaps = 1/164 (0%)
Query: 95 RAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWR 154
R++AYF++ + ++ + + F+ SM+A+ DVLAMA +EV+L++I G V VKW+
Sbjct: 23 RSYAYFMVGAMGLLSSAGAKSTVETFISSMTATADVLAMAKVEVNLAAIPLGKNVVVKWQ 82
Query: 155 GKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGD 214
GKPVFIR RT +I+ ANSVD+ +L+DPQ DA+RVK+P+WL+++G+CTHLGC+P+ AGD
Sbjct: 83 GKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPIGEAGD 142
Query: 215 FGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 258
FGGWFCPCHGSHYDISGRIRKGPAP NLE+P+Y F D +K+++G
Sbjct: 143 FGGWFCPCHGSHYDISGRIRKGPAPLNLEIPAYEF-DGDKVIVG 185
>pdb|3CWB|E Chain E, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|R Chain R, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|E Chain E, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|R Chain R, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|E Chain E, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|R Chain R, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|E Chain E, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|R Chain R, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|E Chain E, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|R Chain R, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|E Chain E, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|R Chain R, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|E Chain E, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|R Chain R, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|E Chain E, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|R Chain R, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|E Chain E, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|R Chain R, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|E Chain E, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|R Chain R, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|E Chain E, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|R Chain R, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|E Chain E, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|R Chain R, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|E Chain E, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|R Chain R, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 196
Score = 210 bits (535), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 88/165 (53%), Positives = 122/165 (73%)
Query: 94 KRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKW 153
++ F+Y V A + ++ +F+ S+SAS DVLA++ +E+ LS I G V KW
Sbjct: 32 RKGFSYLVTATACVATAYAAKNVVTQFISSLSASADVLALSKIEIKLSDIPEGKNVAFKW 91
Query: 154 RGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAG 213
RGKP+F+R RT+ +I VD+ LRDPQ D +RVK PEW+++VGVCTHLGC+P+ N+G
Sbjct: 92 RGKPLFVRHRTQAEINQEAEVDVSKLRDPQHDLDRVKKPEWVILVGVCTHLGCVPIANSG 151
Query: 214 DFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 258
DFGG++CPCHGSHYD SGRIRKGPAPYNLEVP+Y F+ ++ +++G
Sbjct: 152 DFGGYYCPCHGSHYDASGRIRKGPAPYNLEVPTYQFVGDDLVVVG 196
>pdb|1QCR|E Chain E, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
pdb|1BGY|E Chain E, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|Q Chain Q, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|E Chain E, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|E Chain E, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|E Chain E, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|E Chain E, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|E Chain E, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|E Chain E, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|E Chain E, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|E Chain E, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|R Chain R, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|E Chain E, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|R Chain R, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1SQB|E Chain E, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|2A06|E Chain E, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|R Chain R, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|E Chain E, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|E Chain E, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQP|E Chain E, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
pdb|1SQQ|E Chain E, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|E Chain E, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|E Chain E, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|EE Chain e, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 196
Score = 210 bits (534), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 90/166 (54%), Positives = 123/166 (74%)
Query: 93 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVK 152
+++ F+Y V A + ++ +FV SMSAS DVLAM+ +E+ LS I G + K
Sbjct: 31 ARKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFK 90
Query: 153 WRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNA 212
WRGKP+F+R RT+++I +V++ LRDPQ D ERVK PEW++++GVCTHLGC+P+ NA
Sbjct: 91 WRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANA 150
Query: 213 GDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 258
GDFGG++CPCHGSHYD SGRIRKGPAP NLEVPSY F ++ +++G
Sbjct: 151 GDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPSYEFTSDDMVIVG 196
>pdb|1RIE|A Chain A, Structure Of A Water Soluble Fragment Of The Rieske Iron-
Sulfur Protein Of The Bovine Heart Mitochondrial
Cytochrome Bc1-complex
Length = 129
Score = 187 bits (475), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 78/129 (60%), Positives = 103/129 (79%)
Query: 130 VLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERV 189
VLAM+ +E+ LS I G + KWRGKP+F+R RT+++I +V++ LRDPQ D ERV
Sbjct: 1 VLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERV 60
Query: 190 KNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSF 249
K PEW++++GVCTHLGC+P+ NAGDFGG++CPCHGSHYD SGRIRKGPAP NLEVPSY F
Sbjct: 61 KKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPSYEF 120
Query: 250 LDENKMLIG 258
++ +++G
Sbjct: 121 TSDDMVIVG 129
>pdb|1ZRT|E Chain E, Rhodobacter Capsulatus Cytochrome Bc1 Complex With
Stigmatellin Bound
pdb|1ZRT|R Chain R, Rhodobacter Capsulatus Cytochrome Bc1 Complex With
Stigmatellin Bound
Length = 191
Score = 180 bits (456), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 95/188 (50%), Positives = 123/188 (65%), Gaps = 28/188 (14%)
Query: 93 SKRAFAYFVLTG-GRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTV 151
++R F Y G V + + LI + M+AS DV AMAS+ VD+S++E G+ +TV
Sbjct: 10 TRRDFLYHATAATGVVVTGAAVWPLINQ----MNASADVKAMASIFVDVSAVEVGTQLTV 65
Query: 152 KWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNP------------------- 192
KWRGKPVFIRRR E+DI+LA SV LG+LRD AE P
Sbjct: 66 KWRGKPVFIRRRDEKDIELARSVPLGALRDTS--AENANKPGAEATDENRTLPAFDGTNT 123
Query: 193 -EWLVVVGVCTHLGCIPLPN-AGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFL 250
EWLV++GVCTHLGC+P+ + +GDFGGWFCPCHGSHYD +GRIRKGPAP NL++P +F+
Sbjct: 124 GEWLVMLGVCTHLGCVPMGDKSGDFGGWFCPCHGSHYDSAGRIRKGPAPRNLDIPVAAFV 183
Query: 251 DENKMLIG 258
DE + +G
Sbjct: 184 DETTIKLG 191
>pdb|2YIU|C Chain C, X-Ray Structure Of The Dimeric Cytochrome Bc1 Complex From
The Soil Bacterium Paracoccus Denitrificans At 2.7
Angstrom Resolution
pdb|2YIU|F Chain F, X-Ray Structure Of The Dimeric Cytochrome Bc1 Complex From
The Soil Bacterium Paracoccus Denitrificans At 2.7
Angstrom Resolution
Length = 190
Score = 176 bits (445), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 84/153 (54%), Positives = 106/153 (69%), Gaps = 14/153 (9%)
Query: 120 FVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSL 179
V M+ S DV A+AS++VD+S +E G+ +TVKW GKPVFIRRRTE++I+ VDLG L
Sbjct: 38 LVNQMNPSADVQALASIQVDVSGVETGTQLTVKWLGKPVFIRRRTEDEIQAGREVDLGQL 97
Query: 180 RD-----------PQQDAERVKNP--EWLVVVGVCTHLGCIPLPN-AGDFGGWFCPCHGS 225
D P D R + EWLV++GVCTHLGC+P+ + AGDFGGWFCPCHGS
Sbjct: 98 IDRSAQNSNKPDAPATDENRTMDEAGEWLVMIGVCTHLGCVPIGDGAGDFGGWFCPCHGS 157
Query: 226 HYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 258
HYD SGRIR+GPAP NL +P FLD+ + +G
Sbjct: 158 HYDTSGRIRRGPAPQNLHIPVAEFLDDTTIKLG 190
>pdb|2QJP|C Chain C, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|F Chain F, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|I Chain I, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|L Chain L, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
Length = 179
Score = 164 bits (415), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 83/154 (53%), Positives = 103/154 (66%), Gaps = 15/154 (9%)
Query: 120 FVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSL 179
+ M+ S DV A+AS+ VD+SS+EPG +TVK+ GKP+FIRRRTE DI+L SV LG L
Sbjct: 26 LINQMNPSADVQALASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQL 85
Query: 180 RDPQ------------QDAERVKNP--EWLVVVGVCTHLGCIPLPN-AGDFGGWFCPCHG 224
D D R + EWLV+ GVCTHLGC+P+ +GDFGGWFCPCHG
Sbjct: 86 VDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTHLGCVPIGGVSGDFGGWFCPCHG 145
Query: 225 SHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 258
SHYD +GRIRKGPAP NL +P F+DE + +G
Sbjct: 146 SHYDSAGRIRKGPAPENLPIPLAKFIDETTIQLG 179
>pdb|2FYN|C Chain C, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|F Chain F, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|I Chain I, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|L Chain L, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|O Chain O, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|R Chain R, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2QJY|C Chain C, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|F Chain F, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|I Chain I, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|L Chain L, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|O Chain O, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|R Chain R, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
Length = 187
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/154 (53%), Positives = 102/154 (66%), Gaps = 15/154 (9%)
Query: 120 FVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSL 179
+ M+ S DV A+AS+ VD+SS+EPG +TVK+ GKP+FIRRRTE DI+L SV LG L
Sbjct: 34 LINQMNPSADVQALASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQL 93
Query: 180 RDPQ------------QDAERVKNP--EWLVVVGVCTHLGCIPLPN-AGDFGGWFCPCHG 224
D D R + EWLV+ GVCTHLGC P+ +GDFGGWFCPCHG
Sbjct: 94 VDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTHLGCSPIGGVSGDFGGWFCPCHG 153
Query: 225 SHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 258
SHYD +GRIRKGPAP NL +P F+DE + +G
Sbjct: 154 SHYDSAGRIRKGPAPENLPIPLAKFIDETTIQLG 187
>pdb|2QJK|C Chain C, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|F Chain F, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|I Chain I, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|L Chain L, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|O Chain O, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|R Chain R, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
Length = 179
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/154 (53%), Positives = 102/154 (66%), Gaps = 15/154 (9%)
Query: 120 FVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSL 179
+ M+ S DV A+AS+ VD+SS+EPG +TVK+ GKP+FIRRRTE DI+L SV LG L
Sbjct: 26 LINQMNPSADVQALASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQL 85
Query: 180 RDPQ------------QDAERVKNP--EWLVVVGVCTHLGCIPLPN-AGDFGGWFCPCHG 224
D D R + EWLV+ GVCTHLGC P+ +GDFGGWFCPCHG
Sbjct: 86 VDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTHLGCSPIGGVSGDFGGWFCPCHG 145
Query: 225 SHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 258
SHYD +GRIRKGPAP NL +P F+DE + +G
Sbjct: 146 SHYDSAGRIRKGPAPENLPIPLAKFIDETTIQLG 179
>pdb|2NUK|A Chain A, Soluble Domain Of The Rieske Iron-Sulfur Protein From
Rhodobacter Sphaeroides
Length = 141
Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/141 (55%), Positives = 96/141 (68%), Gaps = 15/141 (10%)
Query: 133 MASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQ--------- 183
+AS+ VD+SS+EPG +TVK+ GKP+FIRRRTE DI+L SV LG L D
Sbjct: 1 LASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAG 60
Query: 184 ---QDAERVKNP--EWLVVVGVCTHLGCIPLPN-AGDFGGWFCPCHGSHYDISGRIRKGP 237
D R + EWLV+ GVCTHLGC+P+ +GDFGGWFCPCHGSHYD +GRIRKGP
Sbjct: 61 AEATDQNRTLDEAGEWLVMWGVCTHLGCVPIGGVSGDFGGWFCPCHGSHYDSAGRIRKGP 120
Query: 238 APYNLEVPSYSFLDENKMLIG 258
AP NL +P F+DE + +G
Sbjct: 121 APENLPIPLAKFIDETTIQLG 141
>pdb|2NVE|A Chain A, Soluble Domain Of Rieske Iron Sulfur Protein
Length = 141
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/141 (54%), Positives = 96/141 (68%), Gaps = 15/141 (10%)
Query: 133 MASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQ--------- 183
+AS+ VD+SS+EPG +TVK+ GKP+FIRRRTE DI+L SV LG L D
Sbjct: 1 LASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAG 60
Query: 184 ---QDAERVKNP--EWLVVVGVCTHLGCIPLPN-AGDFGGWFCPCHGSHYDISGRIRKGP 237
D R + EWLV+ GVCTHLGC+P+ +GDFGGWFCPCHG+HYD +GRIRKGP
Sbjct: 61 AEATDQNRTLDEAGEWLVMWGVCTHLGCVPIGGVSGDFGGWFCPCHGTHYDSAGRIRKGP 120
Query: 238 APYNLEVPSYSFLDENKMLIG 258
AP NL +P F+DE + +G
Sbjct: 121 APENLPIPLAKFIDETTIQLG 141
>pdb|2NVG|A Chain A, Soluble Domain Of Rieske Iron Sulfur Protein
Length = 141
Score = 155 bits (391), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 77/141 (54%), Positives = 96/141 (68%), Gaps = 15/141 (10%)
Query: 133 MASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQ--------- 183
+AS+ VD+SS+EPG +TVK+ GKP+FIRRRTE DI+L SV LG L D
Sbjct: 1 LASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAG 60
Query: 184 ---QDAERVKNP--EWLVVVGVCTHLGCIPLPN-AGDFGGWFCPCHGSHYDISGRIRKGP 237
D R + EWLV+ GVCTHLGC+P+ +GDFGGWFCPCHG+HYD +GRIRKGP
Sbjct: 61 AEATDQNRTLDEAGEWLVMWGVCTHLGCVPIGGVSGDFGGWFCPCHGAHYDSAGRIRKGP 120
Query: 238 APYNLEVPSYSFLDENKMLIG 258
AP NL +P F+DE + +G
Sbjct: 121 APENLPIPLAKFIDETTIQLG 141
>pdb|2NUM|A Chain A, Soluble Domain Of Rieske Iron-Sulfur Protein
Length = 141
Score = 155 bits (391), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 77/141 (54%), Positives = 96/141 (68%), Gaps = 15/141 (10%)
Query: 133 MASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQ--------- 183
+AS+ VD+SS+EPG +TVK+ GKP+FIRRRTE DI+L SV LG L D
Sbjct: 1 LASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAG 60
Query: 184 ---QDAERVKNP--EWLVVVGVCTHLGCIPLPN-AGDFGGWFCPCHGSHYDISGRIRKGP 237
D R + EWLV+ GVCTHLGC+P+ +GDFGGWFCPCHGSH+D +GRIRKGP
Sbjct: 61 AEATDQNRTLDEAGEWLVMWGVCTHLGCVPIGGVSGDFGGWFCPCHGSHFDSAGRIRKGP 120
Query: 238 APYNLEVPSYSFLDENKMLIG 258
AP NL +P F+DE + +G
Sbjct: 121 APENLPIPLAKFIDETTIQLG 141
>pdb|2NWF|A Chain A, Soluble Domain Of Rieske Iron Sulfur Protein
Length = 141
Score = 154 bits (389), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 77/141 (54%), Positives = 96/141 (68%), Gaps = 15/141 (10%)
Query: 133 MASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQ--------- 183
+AS+ VD+SS+EPG +TVK+ GKP+FIRRRTE DI+L SV LG L D
Sbjct: 1 LASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAG 60
Query: 184 ---QDAERVKNP--EWLVVVGVCTHLGCIPLPN-AGDFGGWFCPCHGSHYDISGRIRKGP 237
D R + EWLV+ GVCTHLGC+P+ +GDFGGWFCPCHGSH+D +GRIRKGP
Sbjct: 61 AEATDQNRTLDEAGEWLVMWGVCTHLGCVPIGGVSGDFGGWFCPCHGSHWDSAGRIRKGP 120
Query: 238 APYNLEVPSYSFLDENKMLIG 258
AP NL +P F+DE + +G
Sbjct: 121 APENLPIPLAKFIDETTIQLG 141
>pdb|2NVF|A Chain A, Soluble Domain Of Rieske Iron-Sulfur Protein
Length = 141
Score = 154 bits (388), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 77/141 (54%), Positives = 95/141 (67%), Gaps = 15/141 (10%)
Query: 133 MASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQ--------- 183
+AS+ VD+SS+EPG +TVK+ GKP+FIRRRTE DI+L SV LG L D
Sbjct: 1 LASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAG 60
Query: 184 ---QDAERVKNP--EWLVVVGVCTHLGCIPLPN-AGDFGGWFCPCHGSHYDISGRIRKGP 237
D R + EWLV+ GVCTHLGC+P+ +GDFGGWFCPCHG HYD +GRIRKGP
Sbjct: 61 AEATDQNRTLDEAGEWLVMWGVCTHLGCVPIGGVSGDFGGWFCPCHGCHYDSAGRIRKGP 120
Query: 238 APYNLEVPSYSFLDENKMLIG 258
AP NL +P F+DE + +G
Sbjct: 121 APENLPIPLAKFIDETTIQLG 141
>pdb|1VF5|D Chain D, Crystal Structure Of Cytochrome B6f Complex From
M.Laminosus
pdb|1VF5|Q Chain Q, Crystal Structure Of Cytochrome B6f Complex From
M.Laminosus
pdb|2D2C|D Chain D, Crystal Structure Of Cytochrome B6f Complex With Dbmib
From M. Laminosus
pdb|2D2C|Q Chain Q, Crystal Structure Of Cytochrome B6f Complex With Dbmib
From M. Laminosus
Length = 179
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 18/105 (17%)
Query: 169 KLANSVDLGSLRDPQQDAERV------KNPEWLVVV-----------GVCTHLGCIPLPN 211
KL N+V + + +RV +P ++VV VCTHLGC+ N
Sbjct: 59 KLGNNVKVSKFLESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWN 118
Query: 212 AGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKML 256
A + + CPCHGS YD +GR+ +GPAP +L + + D+N +L
Sbjct: 119 AAE-NKFKCPCHGSQYDETGRVIRGPAPLSLALCHATVQDDNIVL 162
>pdb|2E74|D Chain D, Crystal Structure Of The Cytochrome B6f Complex From
M.Laminosus
pdb|2E75|D Chain D, Crystal Structure Of The Cytochrome B6f Complex With
2-nonyl-4- Hydroxyquinoline N-oxide (nqno) From
M.laminosus
pdb|2E76|D Chain D, Crystal Structure Of The Cytochrome B6f Complex With
Tridecyl- Stigmatellin (Tds) From M.Laminosus
pdb|4H0L|D Chain D, Cytochrome B6f Complex Crystal Structure From
Mastigocladus Laminosus With N-side Inhibitor Nqno
pdb|4H13|D Chain D, Crystal Structure Of The Cytochrome B6f Complex From
Mastigocladus Laminosus With Tds
Length = 179
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 18/105 (17%)
Query: 169 KLANSVDLGSLRDPQQDAERV------KNPEWLVVV-----------GVCTHLGCIPLPN 211
KL N+V + + +RV +P ++VV VCTHLGC+ N
Sbjct: 59 KLGNNVKVSKFLESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWN 118
Query: 212 AGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKML 256
A + + CPCHGS YD +G++ +GPAP +L + + D+N +L
Sbjct: 119 AAE-NKFKCPCHGSQYDETGKVIRGPAPLSLALCHATVQDDNIVL 162
>pdb|3AZC|A Chain A, Crystal Structure Of The Soluble Part Of Cytochrome B6f
Complex Iron- Sulfur Subunit From Thermosynechococcus
Elongatus Bp-1
Length = 133
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 199 GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKML 256
VCTHLGC+ N + + CPCHGS YD +G++ +GPAP +L + + +++K++
Sbjct: 59 AVCTHLGCVVPWNVSE-NKFICPCHGSQYDSTGKVVRGPAPLSLALVKATVTEDDKLV 115
>pdb|2ZT9|D Chain D, Crystal Structure Of The Cytochrome B6f Complex From
Nostoc Sp. Pcc 7120
pdb|4H44|D Chain D, 2.70 A Cytochrome B6f Complex Structure From Nostoc Pcc
7120
Length = 179
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 42/61 (68%), Gaps = 2/61 (3%)
Query: 197 VVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKML 256
+ VCTHLGC+ NA + + CPCHGS YD +G++ +GPAP +L + S++ + +K++
Sbjct: 104 INAVCTHLGCVVPWNAAE-NKFKCPCHGSQYDATGKVVRGPAPKSLAL-SHAKTENDKIV 161
Query: 257 I 257
+
Sbjct: 162 L 162
>pdb|1RFS|A Chain A, Rieske Soluble Fragment From Spinach
Length = 139
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 197 VVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKML 256
+ VCTHLGC+ NA + + CPCHGS Y+ GR+ +GPAP +L + ++ +D+ K++
Sbjct: 63 INAVCTHLGCVVPFNAAE-NKFICPCHGSQYNNQGRVVRGPAPLSLAL-AHCDVDDGKVV 120
Query: 257 I 257
Sbjct: 121 F 121
>pdb|1Q90|C Chain C, Structure Of The Cytochrome B6f (Plastohydroquinone :
Plastocyanin Oxidoreductase) From Chlamydomonas
Reinhardtii
Length = 127
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 200 VCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEV 244
VCTHLGC+ +P + CPCHGS Y+ G++ +GPAP +L +
Sbjct: 54 VCTHLGCV-VPWVAAENKFKCPCHGSQYNAEGKVVRGPAPLSLAL 97
>pdb|3FOU|A Chain A, Low Ph Structure Of The Rieske Protein From Thermus
Thermophilus At 2.1 A
pdb|3FOU|B Chain B, Low Ph Structure Of The Rieske Protein From Thermus
Thermophilus At 2.1 A
Length = 156
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 138 VDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVV 197
+ L ++PG + + P ++ E A + L + DP++ A V V
Sbjct: 25 IRLEELKPGDPFVLAYPMDPKTKVVKSGE----AKNTLLVARFDPEELAPEVAQHAAEGV 80
Query: 198 VG---VCTHLGCIPLPNAGDFGGWFCPCHGSHYDI 229
V VCTHLGCI D CPCHG YD+
Sbjct: 81 VAYSAVCTHLGCIVSQWVADEEAALCPCHGGVYDL 115
>pdb|1NYK|A Chain A, Crystal Structure Of The Rieske Protein From Thermus
Thermophilus
pdb|1NYK|B Chain B, Crystal Structure Of The Rieske Protein From Thermus
Thermophilus
Length = 165
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 181 DPQQDAERVKNPEWLVVVG---VCTHLGCIPLPNAGDFGGWFCPCHGSHYDI 229
DP++ A V VV VCTHLGCI D CPCHG YD+
Sbjct: 64 DPEELAPEVAQHAAEGVVAYSAVCTHLGCIVSQWVADEEAALCPCHGGVYDL 115
>pdb|1WPW|A Chain A, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
pdb|1WPW|B Chain B, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
Length = 336
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 200 VCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEV 244
+ LG P N GD F P HG+ +DI+G+ P + L V
Sbjct: 233 IAGSLGIAPSANIGDKKALFEPVHGAAFDIAGKNIGNPTAFLLSV 277
>pdb|3ASJ|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|C Chain C, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|D Chain D, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
Length = 334
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 196 VVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGR 232
+ G+ LG P N GD F P HGS DI+G+
Sbjct: 233 LAAGLVGGLGLAPSGNIGDTTAVFEPVHGSAPDIAGK 269
>pdb|1X0L|A Chain A, Crystal Structure Of Tetrameric Homoisocitrate
Dehydrogenase From An Extreme Thermophile, Thermus
Thermophilus
pdb|1X0L|B Chain B, Crystal Structure Of Tetrameric Homoisocitrate
Dehydrogenase From An Extreme Thermophile, Thermus
Thermophilus
Length = 333
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 196 VVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGR 232
+ G+ LG P N GD F P HGS DI+G+
Sbjct: 232 LAAGLVGGLGLAPSGNIGDTTAVFEPVHGSAPDIAGK 268
>pdb|3AH3|A Chain A, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|B Chain B, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|C Chain C, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|D Chain D, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
Length = 334
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 196 VVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGR 232
+ G+ LG P N GD F P HGS DI+G+
Sbjct: 233 LAAGLMGGLGLAPSGNIGDTTAVFEPVHGSAPDIAGK 269
>pdb|1JM1|A Chain A, Crystal Structure Of The Soluble Domain Of The Rieske
Protein Ii (Soxf) From Sulfolobus Acidocaldarius
Length = 204
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 13/58 (22%)
Query: 200 VCTHLGC-----IPLPNAGDFGGW------FCPCHGSHYDI--SGRIRKGPAPYNLEV 244
VC HLGC + + + D G + CPCHGS Y + G + GPAP L +
Sbjct: 93 VCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKDGGVVVSGPAPRPLPI 150
>pdb|3R8W|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
Length = 405
Score = 30.8 bits (68), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 179 LRDPQQDAERVKNPEWLVVVG-----VCTHLGCIPLPNAGDFG-GWFCPCHGSHYDISGR 232
+RDP+Q V N + ++ + +G +P + D G G F P HGS DI+G+
Sbjct: 271 VRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLSDSGPGLFEPIHGSAPDIAGQ 330
Query: 233 IRKGP 237
+ P
Sbjct: 331 DKANP 335
>pdb|1UGS|A Chain A, Crystal Structure Of Ay114t Mutant Of Co-Type Nitrile
Hydratase
Length = 203
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 146 GSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 205
G+ V VK P F +R + + + +G L+ +D V+N + + V VCT
Sbjct: 54 GAKVVVKAWTDPEFKKRLLADGTEACKELGIGGLQG--EDMMWVENTDEVHHVVVCTLCS 111
Query: 206 CIPLPNAGDFGGWF 219
C P P G WF
Sbjct: 112 CTPWPVLGLPPNWF 125
>pdb|1UGQ|A Chain A, Crystal Structure Of Apoenzyme Of Co-Type Nitrile
Hydratase
Length = 203
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 146 GSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 205
G+ V VK P F +R + + + +G L+ +D V+N + + V VCT
Sbjct: 54 GAKVVVKAWTDPEFKKRLLADGTEACKELGIGGLQG--EDMMWVENTDEVHHVVVCTLCS 111
Query: 206 CIPLPNAGDFGGWF 219
C P P G WF
Sbjct: 112 CYPWPVLGLPPNWF 125
>pdb|3TY3|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY3|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY4|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
pdb|3TY4|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
Length = 366
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 204 LGCIPLPNAGDFGGWFCPCHGSHYDISGR 232
LG +P N GD P HGS DI+GR
Sbjct: 273 LGLVPSANVGDNFVMSEPVHGSAPDIAGR 301
>pdb|2XR8|A Chain A, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|C Chain C, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|E Chain E, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|G Chain G, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|I Chain I, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|K Chain K, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|M Chain M, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|O Chain O, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|Q Chain Q, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|S Chain S, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|U Chain U, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|W Chain W, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XRX|A Chain A, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|C Chain C, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|E Chain E, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|G Chain G, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|I Chain I, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|K Chain K, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|M Chain M, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|O Chain O, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|Q Chain Q, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|S Chain S, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|U Chain U, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|W Chain W, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
Length = 459
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 188 RVKNPEWLVVVGVCTHLGC-IPLPNAGDFGGWFCPCHGSHYDISGRIRKGP 237
R K+ V + C H G I +AG+ + C HG YDI+G++ P
Sbjct: 87 RQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVP 137
>pdb|2XSH|A Chain A, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|C Chain C, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|E Chain E, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|G Chain G, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|I Chain I, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|K Chain K, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSO|A Chain A, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|C Chain C, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|E Chain E, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|G Chain G, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|I Chain I, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|K Chain K, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|M Chain M, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|O Chain O, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|Q Chain Q, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|S Chain S, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|U Chain U, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|W Chain W, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
Length = 459
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 188 RVKNPEWLVVVGVCTHLGC-IPLPNAGDFGGWFCPCHGSHYDISGRIRKGP 237
R K+ V + C H G I +AG+ + C HG YDI+G++ P
Sbjct: 87 RQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVP 137
>pdb|2YFI|A Chain A, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|C Chain C, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|E Chain E, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|G Chain G, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|I Chain I, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|K Chain K, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFJ|A Chain A, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|C Chain C, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|E Chain E, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|G Chain G, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|I Chain I, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|K Chain K, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFL|A Chain A, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|C Chain C, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|E Chain E, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|G Chain G, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|I Chain I, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|K Chain K, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
Length = 459
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 188 RVKNPEWLVVVGVCTHLGC-IPLPNAGDFGGWFCPCHGSHYDISGRIRKGP 237
R K+ V + C H G I +AG+ + C HG YDI+G++ P
Sbjct: 87 RQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVP 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,891,768
Number of Sequences: 62578
Number of extensions: 278483
Number of successful extensions: 633
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 577
Number of HSP's gapped (non-prelim): 37
length of query: 258
length of database: 14,973,337
effective HSP length: 97
effective length of query: 161
effective length of database: 8,903,271
effective search space: 1433426631
effective search space used: 1433426631
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)