Query 025100
Match_columns 258
No_of_seqs 256 out of 1835
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 02:41:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025100.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025100hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1671 Ubiquinol cytochrome c 100.0 7E-53 1.5E-57 367.4 6.0 195 64-258 16-210 (210)
2 TIGR01416 Rieske_proteo ubiqui 100.0 1.3E-42 2.9E-47 299.6 17.1 163 93-258 1-174 (174)
3 cd03470 Rieske_cytochrome_bc1 100.0 2.3E-36 5E-41 248.7 13.8 124 135-258 1-126 (126)
4 COG0723 QcrA Rieske Fe-S prote 100.0 2.2E-33 4.7E-38 240.9 9.8 158 90-258 7-166 (177)
5 PRK13474 cytochrome b6-f compl 99.9 3E-27 6.5E-32 204.8 14.3 137 91-258 11-162 (178)
6 TIGR03171 soxL2 Rieske iron-su 99.9 4.8E-24 1E-28 198.3 9.3 166 82-252 51-269 (321)
7 cd03528 Rieske_RO_ferredoxin R 99.9 3.1E-21 6.7E-26 149.1 9.8 93 138-258 5-98 (98)
8 cd03476 Rieske_ArOX_small Smal 99.9 2.4E-21 5.1E-26 159.6 9.5 101 138-257 7-113 (126)
9 cd03478 Rieske_AIFL_N AIFL (ap 99.8 6.3E-21 1.4E-25 147.5 9.2 91 138-256 4-95 (95)
10 TIGR02377 MocE_fam_FeS Rieske 99.8 1.5E-20 3.2E-25 148.0 9.8 94 138-258 6-100 (101)
11 cd03530 Rieske_NirD_small_Baci 99.8 3.1E-20 6.7E-25 144.2 9.9 93 138-258 5-98 (98)
12 PF00355 Rieske: Rieske [2Fe-2 99.8 4.6E-20 1E-24 142.1 9.5 87 138-252 6-96 (97)
13 PRK09965 3-phenylpropionate di 99.8 7.4E-20 1.6E-24 145.0 8.9 92 138-258 7-100 (106)
14 cd03477 Rieske_YhfW_C YhfW fam 99.8 1.3E-19 2.9E-24 141.1 9.9 83 139-248 4-86 (91)
15 cd03474 Rieske_T4moC Toluene-4 99.8 2.7E-19 5.8E-24 141.4 10.9 92 138-257 5-97 (108)
16 cd03469 Rieske_RO_Alpha_N Ries 99.8 2.5E-19 5.4E-24 142.5 10.3 93 138-257 5-109 (118)
17 TIGR02694 arsenite_ox_S arseni 99.8 3.8E-19 8.1E-24 147.3 9.6 102 137-256 9-114 (129)
18 cd03467 Rieske Rieske domain; 99.8 5E-18 1.1E-22 131.4 10.3 87 138-250 5-92 (98)
19 cd03471 Rieske_cytochrome_b6f 99.8 3.8E-18 8.2E-23 141.0 10.0 66 191-258 43-110 (126)
20 cd03531 Rieske_RO_Alpha_KSH Th 99.7 7.8E-18 1.7E-22 135.6 10.4 93 138-257 6-104 (115)
21 cd04337 Rieske_RO_Alpha_Cao Ca 99.7 7.2E-18 1.6E-22 138.7 10.3 93 138-257 22-118 (129)
22 COG2146 {NirD} Ferredoxin subu 99.7 1.1E-17 2.4E-22 133.9 9.6 93 137-257 8-103 (106)
23 PRK09511 nirD nitrite reductas 99.7 1.8E-17 3.8E-22 132.8 9.8 93 138-257 8-106 (108)
24 TIGR02378 nirD_assim_sml nitri 99.7 1.6E-17 3.5E-22 130.8 8.7 93 138-258 6-104 (105)
25 cd03479 Rieske_RO_Alpha_PhDO_l 99.7 2.6E-17 5.7E-22 137.5 10.3 94 137-257 25-128 (144)
26 cd03529 Rieske_NirD Assimilato 99.7 2.4E-17 5.1E-22 129.7 9.4 92 138-257 5-102 (103)
27 cd03532 Rieske_RO_Alpha_VanA_D 99.7 3.2E-17 6.8E-22 131.9 10.2 92 138-257 10-107 (116)
28 cd04338 Rieske_RO_Alpha_Tic55 99.7 3.9E-17 8.5E-22 135.1 10.1 94 137-257 21-123 (134)
29 cd03548 Rieske_RO_Alpha_OMO_CA 99.7 2.7E-16 5.9E-21 130.1 10.4 92 138-257 19-121 (136)
30 cd03475 Rieske_SoxF_SoxL SoxF 99.7 2.2E-16 4.7E-21 136.6 9.9 114 142-256 16-157 (171)
31 cd03480 Rieske_RO_Alpha_PaO Ri 99.7 3.7E-16 8E-21 130.0 9.9 94 138-257 22-127 (138)
32 cd03473 Rieske_CMP_Neu5Ac_hydr 99.7 2.1E-16 4.5E-21 127.4 7.8 88 139-253 13-104 (107)
33 cd03536 Rieske_RO_Alpha_DTDO T 99.6 1.6E-15 3.5E-20 123.5 10.7 93 138-257 5-112 (123)
34 PF13806 Rieske_2: Rieske-like 99.6 1.3E-15 2.8E-20 121.6 9.1 92 138-257 6-103 (104)
35 cd03472 Rieske_RO_Alpha_BPDO_l 99.6 3.1E-15 6.7E-20 123.1 10.4 76 138-239 13-90 (128)
36 cd03545 Rieske_RO_Alpha_OHBDO_ 99.6 9.1E-15 2E-19 123.4 10.7 76 137-238 29-106 (150)
37 cd03541 Rieske_RO_Alpha_CMO Ri 99.6 8.7E-15 1.9E-19 119.2 8.8 79 139-243 7-86 (118)
38 cd03535 Rieske_RO_Alpha_NDO Ri 99.6 2.4E-14 5.3E-19 116.6 11.2 76 138-239 7-84 (123)
39 cd03537 Rieske_RO_Alpha_PrnD T 99.6 2E-14 4.3E-19 118.0 9.9 92 139-257 9-112 (123)
40 cd03542 Rieske_RO_Alpha_HBDO R 99.5 1.5E-14 3.2E-19 118.4 7.9 85 138-249 5-91 (123)
41 cd03538 Rieske_RO_Alpha_AntDO 99.5 1.9E-14 4.2E-19 120.8 8.6 77 138-240 27-106 (146)
42 cd03539 Rieske_RO_Alpha_S5H Th 99.5 5.5E-14 1.2E-18 115.8 10.3 75 138-238 5-81 (129)
43 PLN00095 chlorophyllide a oxyg 99.5 6.1E-14 1.3E-18 134.3 10.7 93 138-257 77-176 (394)
44 PLN02281 chlorophyllide a oxyg 99.5 1.5E-13 3.3E-18 136.1 10.8 93 138-257 225-321 (536)
45 PLN02518 pheophorbide a oxygen 99.3 8E-12 1.7E-16 124.6 9.9 94 138-257 95-203 (539)
46 TIGR03229 benzo_1_2_benA benzo 99.2 3.1E-11 6.8E-16 117.6 8.3 76 138-239 43-120 (433)
47 COG4638 HcaE Phenylpropionate 99.2 1.3E-10 2.7E-15 109.2 10.4 74 138-237 32-106 (367)
48 TIGR03228 anthran_1_2_A anthra 99.2 9.7E-11 2.1E-15 114.3 9.8 76 138-239 43-120 (438)
49 PF10399 UCR_Fe-S_N: Ubiquitin 98.5 1.5E-07 3.3E-12 64.0 4.1 36 89-127 6-41 (41)
50 PF02921 UCR_TM: Ubiquinol cyt 98.4 2.7E-07 5.9E-12 68.2 3.3 59 67-129 2-64 (64)
51 PF08802 CytB6-F_Fe-S: Cytochr 94.8 0.045 9.7E-07 37.0 3.6 34 91-127 5-38 (39)
52 TIGR02811 formate_TAT formate 89.3 0.53 1.2E-05 35.0 3.7 16 91-106 8-23 (66)
53 PF10518 TAT_signal: TAT (twin 84.5 1.2 2.5E-05 27.4 2.6 14 92-105 2-15 (26)
54 PF10080 DUF2318: Predicted me 84.0 13 0.00029 29.9 9.3 84 142-257 1-90 (102)
55 TIGR01409 TAT_signal_seq Tat ( 82.6 1.2 2.6E-05 27.7 2.2 18 92-109 1-18 (29)
56 COG4393 Predicted membrane pro 79.1 32 0.0007 33.6 11.4 90 134-257 289-388 (405)
57 COG0473 LeuB Isocitrate/isopro 56.5 7.2 0.00016 37.8 2.0 35 203-237 251-287 (348)
58 PF07897 DUF1675: Protein of u 46.4 8.9 0.00019 36.2 0.9 22 212-233 247-268 (284)
59 PRK09898 hypothetical protein; 37.2 21 0.00044 31.5 1.7 13 92-104 13-25 (208)
60 PRK09476 napG quinol dehydroge 35.0 55 0.0012 30.0 4.2 17 90-106 7-23 (254)
61 COG0375 HybF Zn finger protein 32.5 21 0.00045 29.5 0.9 18 216-233 85-104 (115)
62 PF09263 PEX-2N: Peroxisome bi 31.6 25 0.00055 27.7 1.1 58 143-223 28-86 (87)
63 PRK06451 isocitrate dehydrogen 31.3 26 0.00056 34.7 1.5 34 204-237 313-346 (412)
64 PRK13747 putative mercury resi 31.1 15 0.00032 28.3 -0.2 9 216-224 24-32 (78)
65 PRK08997 isocitrate dehydrogen 29.3 32 0.00069 33.2 1.6 35 203-237 242-276 (334)
66 TIGR02088 LEU3_arch isopropylm 29.3 25 0.00055 33.6 1.0 35 203-237 234-268 (322)
67 PF05052 MerE: MerE protein; 28.9 17 0.00037 27.9 -0.2 11 216-226 24-34 (75)
68 PRK14993 tetrathionate reducta 28.8 62 0.0013 29.5 3.4 12 91-102 2-13 (244)
69 PLN02329 3-isopropylmalate deh 27.7 33 0.00071 34.1 1.5 35 203-237 304-339 (409)
70 PRK10882 hydrogenase 2 protein 26.7 48 0.001 31.8 2.3 13 93-105 2-14 (328)
71 PRK07362 isocitrate dehydrogen 25.2 42 0.0009 34.0 1.7 35 204-238 377-411 (474)
72 PRK09400 secE preprotein trans 23.7 2.1E+02 0.0045 20.9 4.7 13 91-103 26-38 (61)
73 PRK14990 anaerobic dimethyl su 21.5 81 0.0018 33.2 3.1 13 91-103 13-25 (814)
74 TIGR00169 leuB 3-isopropylmala 21.4 45 0.00097 32.3 1.0 34 204-237 257-291 (349)
75 PRK14025 multifunctional 3-iso 21.3 57 0.0012 31.4 1.7 35 203-237 239-273 (330)
76 PRK08572 rps17p 30S ribosomal 21.2 36 0.00077 27.8 0.3 17 219-236 18-34 (108)
77 PRK11433 aldehyde oxidoreducta 20.8 2.8E+02 0.0061 25.3 6.0 17 145-161 48-64 (217)
No 1
>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion]
Probab=100.00 E-value=7e-53 Score=367.43 Aligned_cols=195 Identities=51% Similarity=0.917 Sum_probs=180.3
Q ss_pred CcccccccCCCccccccCcccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhcceeeeeCCCC
Q 025100 64 PATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSI 143 (258)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~RR~Fl~~~~~g~~~v~a~~~~~~~~p~v~~~~ps~~~~A~a~v~VdlsdL 143 (258)
...+++++.|+....+++.++++....++.|+.|.|++++++.+..+.+++..+..||.+|.++++++|++++|+++++|
T Consensus 16 ~~~~t~~~~p~~~~~~~~~~~~~~~~~~~~k~~~sy~~~g~~~~~~a~~ak~~v~~fi~smsAsadvlA~akiei~l~~I 95 (210)
T KOG1671|consen 16 GSSHTDLMVPDFSDYRRESVKDHQDTGEERKGFRSYLMVGAGAAGRAYAAKNLVTTFISSMSASADVLAMAKIEIKLSDI 95 (210)
T ss_pred ccccccccCCCchhhhchhhhccccchhhhhceeeEEEecccceeehhhhhhhHHHHHHHhhhhhhhhhheeeeeeeecC
Confidence 34489999999888888888876666676667678888776666667777899999999999999999999999999999
Q ss_pred CCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCCCCEEEccCC
Q 025100 144 EPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCH 223 (258)
Q Consensus 144 ~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd~gg~~CPCH 223 (258)
|+|..++|+|+||||||.|||++||+.+++++.+.|||||.|.+|.++.+|++++++||||||+|.++.+|+|+|+||||
T Consensus 96 PeGk~~~~kwrGkpvfirhrt~~ei~~~r~V~~s~lrDPq~d~~rvk~~ewl~~igVCThLGCVp~~~AGd~gg~~CPCH 175 (210)
T KOG1671|consen 96 PEGKTVAFKWRGKPVFIRHRTKAEIEGERNVPQSTLRDPQDDVDRVKKPEWLVVIGVCTHLGCVPIANAGDYGGYYCPCH 175 (210)
T ss_pred CCCCCcceeccCCceEEeeccccccccccccchhhccCchhhhhhccCcceEEEEeeeccccccccccccccCceecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEeCCCCceecCCCCCCCcCceEEEeeCCEEEEC
Q 025100 224 GSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 258 (258)
Q Consensus 224 GS~FDlsGrv~~GPAp~nL~vppy~~~~d~~I~IG 258 (258)
|||||.+||+++||||.||++|.|+|.++++|+||
T Consensus 176 GSHYdasGRIrkGPAPlnlevP~y~F~~~d~vivg 210 (210)
T KOG1671|consen 176 GSHYDASGRIRKGPAPLNLEVPTYEFTSEDKVIVG 210 (210)
T ss_pred cccccccCceecCCCCCccCCCceecccCceEecC
Confidence 99999999999999999999999999887899887
No 2
>TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit. Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix.
Probab=100.00 E-value=1.3e-42 Score=299.58 Aligned_cols=163 Identities=53% Similarity=1.006 Sum_probs=146.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhc-ceeeeeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhh
Q 025100 93 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAM-ASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLA 171 (258)
Q Consensus 93 ~RR~Fl~~~~~g~~~v~a~~~~~~~~p~v~~~~ps~~~~A~-a~v~VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~ 171 (258)
+||+||+.++++.++++++ .+++|++.+|.|+++.++. ++++|++++|++|+.+.|.|+|+||+|+|+|++||+.+
T Consensus 1 ~RR~fl~~~~~~~~~~~~~---~~~~p~v~~~~P~~~~~a~~~~~~v~l~eL~pG~~~~v~~~GkpI~I~~~t~~~~~~~ 77 (174)
T TIGR01416 1 TRRDFLYAATGAVGAVGAA---AAAVPFIDSMNPSASVKAAGAPTEVDVSKIQPGQQLTVEWRGKPVFIRRRTKKEIDAL 77 (174)
T ss_pred ChHHHHHHHHHHHHHHHHH---HHHHHHHheeCcchhccccCCcEEEEHHHCCCCCeEEEEECCeEEEEEeCCHHHhhhh
Confidence 5999999988766655543 4689999999999998887 78999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcccc--------cccccCCcEEEEEccccCCCeeccCCCC--CCCEEEccCCCeEeCCCCceecCCCCCC
Q 025100 172 NSVDLGSLRDPQQD--------AERVKNPEWLVVVGVCTHLGCIPLPNAG--DFGGWFCPCHGSHYDISGRIRKGPAPYN 241 (258)
Q Consensus 172 ~~~~~~~lrDP~~~--------~~R~~~ge~~a~~~vCTHLGC~p~~~~g--d~gg~~CPCHGS~FDlsGrv~~GPAp~n 241 (258)
.+++.+.|+||++. ..|+.+++|+|++++|||+||++.|... ++++|+||||||+||++|+++.|||++|
T Consensus 78 ~~~~~~~l~Dp~~~~~~~~~~~~~r~~~~~~~a~~~~CtH~Gc~~~~~~~~~~~~~~~CPcHgs~Fd~~G~~~~gpa~~~ 157 (174)
T TIGR01416 78 KALDLGALKDPNSEAQQPDYARVKRSGKPEWLVVIGICTHLGCIPTYGPEEGDKGGFFCPCHGSHYDTAGRVRKGPAPLN 157 (174)
T ss_pred hccchhhcCCCcccccCcchhhhhhccCCcEEEEEeccCCCCCccccccCCCCCCEEEeCCCCCEECCCCcEecCCCCCC
Confidence 99999999999653 2466689999999999999999987632 2578999999999999999999999999
Q ss_pred CcCceEEEeeCCEEEEC
Q 025100 242 LEVPSYSFLDENKMLIG 258 (258)
Q Consensus 242 L~vppy~~~~d~~I~IG 258 (258)
|++|||+|++|++|+||
T Consensus 158 L~~~~~~~~~~~~~~ig 174 (174)
T TIGR01416 158 LPVPPYKFLSDTTILIG 174 (174)
T ss_pred CCCCCEEEcCCCEEEeC
Confidence 99999999888899998
No 3
>cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including uni- and multi-cellular eukaryotes, plants (in their mitochondria) and bacteria. The cytochrome bc(1) and b6f complexes are central components of the respiratory and photosynthetic electron transport chains, respectively, which carry out similar core electron and proton transfer steps. The bc(1) and b6f complexes share a common core structure of three catalytic subunits: cyt b, the Rieske ISP, and either a cyt c1 in the bc(1) complex or cyt f in the b6f complex, which are arranged in an integral membrane-bound dimeric complex. While the core of the b6f complex is similar to that of the bc(1) complex, the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=100.00 E-value=2.3e-36 Score=248.69 Aligned_cols=124 Identities=65% Similarity=1.248 Sum_probs=115.3
Q ss_pred eeeeeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCccc--ccccccCCcEEEEEccccCCCeeccCCC
Q 025100 135 SLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQ--DAERVKNPEWLVVVGVCTHLGCIPLPNA 212 (258)
Q Consensus 135 ~v~VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~--~~~R~~~ge~~a~~~vCTHLGC~p~~~~ 212 (258)
+++||+++|++|+.++|+|+|+||||+|||++||+.+.+.+...+.||+. +..|+.+++|+|++++|||+||.+.++.
T Consensus 1 ~~~vdl~~l~~G~~~~v~w~Gkpv~I~~rt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~CtH~gc~~~~~~ 80 (126)
T cd03470 1 PVEVDLSKIEEGQLITVEWRGKPVFIRRRTPEEIAEAKAVDLSLLDDPDPAANRVRSGKPEWLVVIGICTHLGCVPTYRA 80 (126)
T ss_pred CEEEEhhhCCCCCEEEEEECCeEEEEEECCHHHHhhhhhcchhhcCCccccccccccCCCcEEEEeCcCCCCCCeecccc
Confidence 47899999999999999999999999999999999999998888888765 4578899999999999999999999876
Q ss_pred CCCCEEEccCCCeEeCCCCceecCCCCCCCcCceEEEeeCCEEEEC
Q 025100 213 GDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 258 (258)
Q Consensus 213 gd~gg~~CPCHGS~FDlsGrv~~GPAp~nL~vppy~~~~d~~I~IG 258 (258)
.+.+.|+||||||+||++|+++.|||++||++||+++.++++|+||
T Consensus 81 ~~~~~~~CPcHgs~Fdl~G~~~~gPa~~~L~~~p~~~~~~~~l~ig 126 (126)
T cd03470 81 GDYGGFFCPCHGSHYDASGRIRKGPAPLNLEVPPYKFLSDTTIVIG 126 (126)
T ss_pred CCCCEEEecCcCCEECCCCeEecCCCCCCCCeeeEEEecCCEEEeC
Confidence 6678999999999999999999999999999999999777899998
No 4
>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion]
Probab=100.00 E-value=2.2e-33 Score=240.92 Aligned_cols=158 Identities=42% Similarity=0.630 Sum_probs=130.4
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh-hhcceeeeeCCCCCCCCeEEEEECCEEEEEEeCCHHHH
Q 025100 90 GDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDV-LAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDI 168 (258)
Q Consensus 90 ~~~~RR~Fl~~~~~g~~~v~a~~~~~~~~p~v~~~~ps~~~-~A~a~v~VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i 168 (258)
...+||+||..++.+.+++++ ..+++|++.++.|+++. .+.+.+++|...+.+++..++.|+++|+|+.+|++.++
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~---~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 83 (177)
T COG0723 7 TGLSRRDFLVLLTTGVGAVGA---GAALYPAVESVDPPAGGGLAGAPIEVDDSGIGPGPLVTVPWRGKPVFLLRRTEYAG 83 (177)
T ss_pred ccccHHHhhhhhhccccccce---eeeeeehhhcccCcccccccCCceeeeccCCccceEEEEecCCCCeeeEeeccccc
Confidence 466899999998765554443 25778999999998876 66689999999999999999999999999999987666
Q ss_pred HhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccC-CCCCCCEEEccCCCeEeCCCCceecCCCCCCCcCceE
Q 025100 169 KLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLP-NAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSY 247 (258)
Q Consensus 169 ~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~-~~gd~gg~~CPCHGS~FDlsGrv~~GPAp~nL~vppy 247 (258)
.+.......++.++ .++|+|++++||||||.+.| +..+.++|+||||||+||.+|+|++|||++||+++++
T Consensus 84 ~~~~~~~~~~~~~~--------~~~~~a~~~iCtHlGC~~~~~~~~~~~~~~CPCHGS~yd~~g~vv~GPA~~~L~~~~~ 155 (177)
T COG0723 84 PKGGVTRDGDGGVG--------NKEIVAYSAICTHLGCTVPWNNAGAEGGFFCPCHGSRYDPDGGVVKGPAPRPLPIPPL 155 (177)
T ss_pred ccccceecccCCCC--------CccEEEEeeeccCCCCccCcccCCCCCeEEccCCCCeEcCCCCeeCCCCCCCcCCceE
Confidence 66554444444443 26999999999999999999 4556799999999999999999999999999999999
Q ss_pred EEeeCCEEEEC
Q 025100 248 SFLDENKMLIG 258 (258)
Q Consensus 248 ~~~~d~~I~IG 258 (258)
++.+|..+.+|
T Consensus 156 ~~~~d~~~~~~ 166 (177)
T COG0723 156 EYDSDKLYLIG 166 (177)
T ss_pred EEeCCceEEEE
Confidence 99555555553
No 5
>PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional
Probab=99.95 E-value=3e-27 Score=204.80 Aligned_cols=137 Identities=26% Similarity=0.500 Sum_probs=109.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhccee--------eeeCCCC----CCCCeEEEE-ECCEE
Q 025100 91 DPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASL--------EVDLSSI----EPGSTVTVK-WRGKP 157 (258)
Q Consensus 91 ~~~RR~Fl~~~~~g~~~v~a~~~~~~~~p~v~~~~ps~~~~A~a~v--------~VdlsdL----~pG~~~~v~-w~GkP 157 (258)
|.+||+||+.++.|.++++++ .+++|++.+|.|+++..+.... .|.++++ ++|+...|. ..|++
T Consensus 11 d~~RR~FL~~~~~~~gg~~a~---~~~~P~v~~~~Pp~~~~~~g~~~a~d~~G~~I~~s~~~~~~~~g~~~~v~~~~g~~ 87 (178)
T PRK13474 11 SMGRRQFMNLLTFGTVTGVAL---GALYPVVKYFIPPSAGGAGGGTTAKDELGNDIPASQFLATHPAGDRSLVQGLKGDP 87 (178)
T ss_pred CccHHHHHHHHHHHHHHHHHH---HHHHHhhheeCChhHccCCCcceeecccCCeeehhhccccCCCCCcEEEEEcCCCe
Confidence 568999999987665555432 4789999999999876554211 3467777 889888887 67887
Q ss_pred EEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcE--EEEEccccCCCeeccCCCCCCCEEEccCCCeEeCCCCceec
Q 025100 158 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEW--LVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRK 235 (258)
Q Consensus 158 V~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~--~a~~~vCTHLGC~p~~~~gd~gg~~CPCHGS~FDlsGrv~~ 235 (258)
.+++.+ .++++ ++++++|||+||++.++..+ +.|.||||||+||.+|.++.
T Consensus 88 ~~lv~~--------------------------~~g~~~~~a~~~~CtH~gc~l~~~~~~-~~~~CP~Hgs~Fd~tG~~~~ 140 (178)
T PRK13474 88 TYLVVE--------------------------EDGTIASYGINAVCTHLGCVVPWNSGE-NKFQCPCHGSQYDATGKVVR 140 (178)
T ss_pred EEEEEe--------------------------CCCEEEEEEecCCCCCCCCccccccCC-CEEEecCcCCEECCCCCCcc
Confidence 444332 36788 67899999999999887654 69999999999999999999
Q ss_pred CCCCCCCcCceEEEeeCCEEEEC
Q 025100 236 GPAPYNLEVPSYSFLDENKMLIG 258 (258)
Q Consensus 236 GPAp~nL~vppy~~~~d~~I~IG 258 (258)
||++++|+.+++++ +|+.|+|.
T Consensus 141 gPa~~~L~~y~v~v-~~g~v~v~ 162 (178)
T PRK13474 141 GPAPLSLALVHVTV-EDDKVLFS 162 (178)
T ss_pred CCCCCCCCeEeEEE-ECCEEEEE
Confidence 99999999999987 78898873
No 6
>TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2. This iron-sulfur protein is found in a contiguous genomic region with subunits of cytochrome b558/566 in several archaeal species, and appears to be part of a cytochrome bc1-analogous system.
Probab=99.90 E-value=4.8e-24 Score=198.32 Aligned_cols=166 Identities=21% Similarity=0.265 Sum_probs=115.5
Q ss_pred cccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhc-c---ee------eeeCCCCCCCCeEEE
Q 025100 82 YNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAM-A---SL------EVDLSSIEPGSTVTV 151 (258)
Q Consensus 82 ~~~~r~~~~~~~RR~Fl~~~~~g~~~v~a~~~~~~~~p~v~~~~ps~~~~A~-a---~v------~VdlsdL~pG~~~~v 151 (258)
|-.+++.+.+.+||+||..+++|++++++ ..++|++.+|.|++++++. + .+ .|..++|++|+...+
T Consensus 51 ~~~~~~~~vD~~RR~fL~~al~gAga~a~----~~avPlv~~l~PP~~a~atG~pk~La~D~~GnPIKASdL~vnSp~~~ 126 (321)
T TIGR03171 51 YVNKNVGGVDEGRRKFLKGLIFGIAAAAV----VGIIPGLRVLVPPTVAAASGFPKSLLVDSSGNPIKASSIPVNSPIIT 126 (321)
T ss_pred hhhcccCCCCccHHHHHHHHHHHHHHHHh----hhhhhheecccCchhhhccCCCceEEecCCCCeeeHHHccCCCcccc
Confidence 34578888899999999988776655332 3468999999998876644 2 11 278899999998854
Q ss_pred EE----CCEEEEEEeCCHHHHHhhccCCCCCCCCccccc-ccc-----cCCcEEEEEccccCCCeeccC---CC------
Q 025100 152 KW----RGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDA-ERV-----KNPEWLVVVGVCTHLGCIPLP---NA------ 212 (258)
Q Consensus 152 ~w----~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~-~R~-----~~ge~~a~~~vCTHLGC~p~~---~~------ 212 (258)
.. .+.|-++++..+...... +++..+++.|+... ++. .++.++||+++|||+||++.+ .+
T Consensus 127 lfeyPl~gdP~fLIklgka~~~~v-~i~p~~v~~~~~g~~y~~pgGVGp~~~IVAyS~IC~H~GC~~~~~~~Ypp~~~~~ 205 (321)
T TIGR03171 127 IFEYPMTGEPNFLLNLGDSSGKPV-EIPPTKVVVPQTGKTYTFPGGVGPNKSIVAYSAICQHLGCTPPYIHFYPPNYVNP 205 (321)
T ss_pred cccCcCCCCcHHHHHhhhhcCCce-ecCccccccCCCCcceeccCCcCCCCCEEEEecccCcCCCCcchhhccCcccccc
Confidence 33 244555544322111111 44555566565432 222 478999999999999998832 11
Q ss_pred -------------------C---CCCEEEccCCCeEeCC-C-CceecCCCCCCCcCceEEEeeC
Q 025100 213 -------------------G---DFGGWFCPCHGSHYDI-S-GRIRKGPAPYNLEVPSYSFLDE 252 (258)
Q Consensus 213 -------------------g---d~gg~~CPCHGS~FDl-s-Grv~~GPAp~nL~vppy~~~~d 252 (258)
. ..+.|.||||||+||. . |.++.|||+++|+.+++++.++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPCHgS~FD~~~gg~Vv~GPA~rpLp~i~l~~d~~ 269 (321)
T TIGR03171 206 SQLTAPEPDQLTAQALLAAKQANVPALIHCDCHGSTYDPYHGAAVLTGPTVRPLPAVILEWDSS 269 (321)
T ss_pred cccccccccccchhhhhhhhccCCCCeEECCCCCCEECCCCCCceeCCCCCCCCCcceEEEeCC
Confidence 0 1248999999999999 4 5899999999999999998533
No 7
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=99.85 E-value=3.1e-21 Score=149.09 Aligned_cols=93 Identities=20% Similarity=0.374 Sum_probs=83.3
Q ss_pred eeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCCCCE
Q 025100 138 VDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGG 217 (258)
Q Consensus 138 VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd~gg 217 (258)
..+++|++|+.+.+.+.|++++|+|. +++++|+.++|||+||++..+..+.+.
T Consensus 5 ~~~~~l~~g~~~~~~~~g~~~~v~r~---------------------------~~~~~a~~~~CpH~g~~L~~g~~~~~~ 57 (98)
T cd03528 5 CAVDELPEGEPKRVDVGGRPIAVYRV---------------------------DGEFYATDDLCTHGDASLSEGYVEGGV 57 (98)
T ss_pred EEhhhcCCCCEEEEEECCeEEEEEEE---------------------------CCEEEEECCcCCCCCCCCCCCeEeCCE
Confidence 57889999999999999999999862 569999999999999999876556678
Q ss_pred EEccCCCeEeCC-CCceecCCCCCCCcCceEEEeeCCEEEEC
Q 025100 218 WFCPCHGSHYDI-SGRIRKGPAPYNLEVPSYSFLDENKMLIG 258 (258)
Q Consensus 218 ~~CPCHGS~FDl-sGrv~~GPAp~nL~vppy~~~~d~~I~IG 258 (258)
+.||||||+||+ +|+++.+|+..+|+.++.++ +++.|+|.
T Consensus 58 i~Cp~Hg~~fd~~~G~~~~~p~~~~L~~~~v~~-~~g~v~v~ 98 (98)
T cd03528 58 IECPLHGGRFDLRTGKALSLPATEPLKTYPVKV-EDGDVYVD 98 (98)
T ss_pred EEeCCcCCEEECCCCcccCCCCCCCcceEeEEE-ECCEEEEC
Confidence 999999999999 99999999999999888886 78899873
No 8
>cd03476 Rieske_ArOX_small Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate. It consists of two subunits, a large subunit similar to members of the DMSO reductase family of molybdenum enzymes and a small subunit with a Rieske-type [2Fe-2S] cluster. The large subunit of ArOX contains the molybdenum site at which the oxidation of arsenite occurs. The small subunit contains a domain homologous to the Rieske domains of the cytochrome bc(1) and cytochrome b6f complexes as well as naphthalene 1,2-dioxygenase. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer.
Probab=99.85 E-value=2.4e-21 Score=159.62 Aligned_cols=101 Identities=24% Similarity=0.464 Sum_probs=83.5
Q ss_pred eeCCCCCCCCeEEEEECC--EEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCCC
Q 025100 138 VDLSSIEPGSTVTVKWRG--KPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDF 215 (258)
Q Consensus 138 VdlsdL~pG~~~~v~w~G--kPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd~ 215 (258)
+++++|++|+.+.|.+.+ ++++|+|..+++.. .+..+++++|++++|||+||++.++. +.
T Consensus 7 ~~~~~l~~g~~~~~~~~~~~~~i~v~r~~~~~~~-----------------~~~~~g~~~A~~~~CpH~g~~L~~g~-~~ 68 (126)
T cd03476 7 ANLSQLSPGQPVTFNYPDESSPCVLVKLGVPVPG-----------------GVGPDNDIVAFSALCTHMGCPLTYDP-SN 68 (126)
T ss_pred eeHHHCCCCCeEEEEcCCCCCcEEEEECCccccC-----------------ccccCCEEEEEeCcCCCCCccccccc-cC
Confidence 488999999999999988 79999875321111 11246899999999999999998865 66
Q ss_pred CEEEccCCCeEeCC--CCceecCCCCCCCcCceEEEee--CCEEEE
Q 025100 216 GGWFCPCHGSHYDI--SGRIRKGPAPYNLEVPSYSFLD--ENKMLI 257 (258)
Q Consensus 216 gg~~CPCHGS~FDl--sGrv~~GPAp~nL~vppy~~~~--d~~I~I 257 (258)
+.|.||||||+||+ +|+++.||+..+|+++|+++ + ++.|+|
T Consensus 69 ~~v~CP~Hg~~Fdl~tgG~~~~gPa~~~L~~ypv~v-e~~~g~V~~ 113 (126)
T cd03476 69 KTFVCPCHFSQFDPARGGQMVSGQATQNLPQIVLEY-DEASGDIYA 113 (126)
T ss_pred CEEEccCcCCEEeCCCCCeEEcCCCCCCCCeEEEEE-ECCCCEEEE
Confidence 78999999999999 47999999999999999997 5 777764
No 9
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=99.84 E-value=6.3e-21 Score=147.46 Aligned_cols=91 Identities=22% Similarity=0.366 Sum_probs=80.9
Q ss_pred eeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCCCCE
Q 025100 138 VDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGG 217 (258)
Q Consensus 138 VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd~gg 217 (258)
+.+++|++|+.+.+.+.|++|+|+|. +++++|+.++|||+||++.++..+.+.
T Consensus 4 ~~~~~l~~g~~~~~~~~~~~v~v~r~---------------------------~g~~~A~~~~CpH~g~~L~~g~~~~~~ 56 (95)
T cd03478 4 CRLSDLGDGEMKEVDVGDGKVLLVRQ---------------------------GGEVHAIGAKCPHYGAPLAKGVLTDGR 56 (95)
T ss_pred eehhhCCCCCEEEEEeCCcEEEEEEE---------------------------CCEEEEEcCcCcCCCCccCCCeEeCCE
Confidence 57889999999999999999999862 689999999999999999876555688
Q ss_pred EEccCCCeEeCC-CCceecCCCCCCCcCceEEEeeCCEEE
Q 025100 218 WFCPCHGSHYDI-SGRIRKGPAPYNLEVPSYSFLDENKML 256 (258)
Q Consensus 218 ~~CPCHGS~FDl-sGrv~~GPAp~nL~vppy~~~~d~~I~ 256 (258)
+.||||||+||+ +|++..+|+..+|+.++.++ +++.|+
T Consensus 57 i~CP~Hg~~Fdl~tG~~~~~p~~~~l~~~~v~~-~~g~i~ 95 (95)
T cd03478 57 IRCPWHGACFNLRTGDIEDAPALDSLPCYEVEV-EDGRVY 95 (95)
T ss_pred EEcCCCCCEEECCCCcCcCCCccCCcceEEEEE-ECCEEC
Confidence 999999999999 99999999988899888886 777774
No 10
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=99.84 E-value=1.5e-20 Score=147.99 Aligned_cols=94 Identities=18% Similarity=0.241 Sum_probs=83.5
Q ss_pred eeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCCCCE
Q 025100 138 VDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGG 217 (258)
Q Consensus 138 VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd~gg 217 (258)
+.+++|++|+.+.+..+|++++|+|. .+++++|+.+.|||+|+++..+..+.+.
T Consensus 6 ~~~~dl~~g~~~~~~~~g~~i~l~r~--------------------------~~g~~~A~~~~CpH~g~~L~~G~~~~~~ 59 (101)
T TIGR02377 6 CDADDIGREDVARFDHGGRTFAIYRT--------------------------PDDQYYATDGLCTHEYAHLADGLVMDTT 59 (101)
T ss_pred EEHHHcCCCCEEEEEECCeEEEEEEe--------------------------CCCEEEEEcCcCCCCCCCCCCCEEcCCE
Confidence 57889999999999999999999862 2689999999999999998876555688
Q ss_pred EEccCCCeEeCC-CCceecCCCCCCCcCceEEEeeCCEEEEC
Q 025100 218 WFCPCHGSHYDI-SGRIRKGPAPYNLEVPSYSFLDENKMLIG 258 (258)
Q Consensus 218 ~~CPCHGS~FDl-sGrv~~GPAp~nL~vppy~~~~d~~I~IG 258 (258)
+.|||||++||+ +|+++.+|+..+|+++|.++ +++.|+|.
T Consensus 60 i~CP~Hg~~Fdl~tG~~~~~p~~~~l~~y~v~v-~~g~v~V~ 100 (101)
T TIGR02377 60 VECPKHAGCFDYRTGEALNPPVCVNLKTYPVKV-VDGAVYVD 100 (101)
T ss_pred EECCccCCEEECCCCcccCCCccCCcceEeEEE-ECCEEEEe
Confidence 999999999998 99999999888999999886 88999873
No 11
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=99.83 E-value=3.1e-20 Score=144.16 Aligned_cols=93 Identities=19% Similarity=0.280 Sum_probs=81.5
Q ss_pred eeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCCCCE
Q 025100 138 VDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGG 217 (258)
Q Consensus 138 VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd~gg 217 (258)
+.+++|++|+.+.+...|++++|+|. .+++++|+.++|||+||++.++..+.+.
T Consensus 5 ~~~~~l~~~~~~~~~~~g~~i~l~r~--------------------------~~g~~~A~~~~CpH~g~~L~~g~~~~~~ 58 (98)
T cd03530 5 GALEDIPPRGARKVQTGGGEIAVFRT--------------------------ADDEVFALENRCPHKGGPLSEGIVHGEY 58 (98)
T ss_pred EEHHHCCCCCcEEEEECCEEEEEEEe--------------------------CCCCEEEEcCcCCCCCCCccCCEEcCCE
Confidence 46788999999999999999999863 3589999999999999999887666689
Q ss_pred EEccCCCeEeCC-CCceecCCCCCCCcCceEEEeeCCEEEEC
Q 025100 218 WFCPCHGSHYDI-SGRIRKGPAPYNLEVPSYSFLDENKMLIG 258 (258)
Q Consensus 218 ~~CPCHGS~FDl-sGrv~~GPAp~nL~vppy~~~~d~~I~IG 258 (258)
+.||||||+||+ +|.+ .+|+...|+.+|.++ +++.|+|+
T Consensus 59 i~Cp~Hg~~Fdl~~G~~-~~p~~~~l~~y~v~v-~~g~v~v~ 98 (98)
T cd03530 59 VTCPLHNWVIDLETGEA-QGPDEGCVRTFPVKV-EDGRVYLG 98 (98)
T ss_pred EECCCCCCEEECCCCCC-CCCCCCccceEeEEE-ECCEEEEC
Confidence 999999999999 8986 577778899888886 78999986
No 12
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=99.82 E-value=4.6e-20 Score=142.06 Aligned_cols=87 Identities=31% Similarity=0.548 Sum_probs=74.5
Q ss_pred eeCCCCCC-CCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCC--CC
Q 025100 138 VDLSSIEP-GSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNA--GD 214 (258)
Q Consensus 138 VdlsdL~p-G~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~--gd 214 (258)
+..++|++ |..+.+.+.++.|++++ .+++++|+.++|||+||++.++. .+
T Consensus 6 ~~~~el~~~~~~~~~~~~~~~v~~~~---------------------------~~g~~~A~~~~CpH~g~~l~~~~~~~~ 58 (97)
T PF00355_consen 6 CRSSELPEPGDVKRVDVGGKLVLVRR---------------------------SDGEIYAFSNRCPHQGCPLSEGPFSED 58 (97)
T ss_dssp EEGGGSHSTTEEEEEEETTEEEEEEE---------------------------TTTEEEEEESB-TTTSBBGGCSSEETT
T ss_pred eEHHHCCCCCCEEEEEcCCcEEEEEe---------------------------CCCCEEEEEccCCccceeEcceecccc
Confidence 47788888 88989999777887764 38999999999999999999883 44
Q ss_pred CCEEEccCCCeEeCC-CCceecCCCCCCCcCceEEEeeC
Q 025100 215 FGGWFCPCHGSHYDI-SGRIRKGPAPYNLEVPSYSFLDE 252 (258)
Q Consensus 215 ~gg~~CPCHGS~FDl-sGrv~~GPAp~nL~vppy~~~~d 252 (258)
.+.+.||||||+||+ +|+++.||+..+|+.+|.++ ++
T Consensus 59 ~~~i~Cp~Hg~~Fd~~tG~~~~~p~~~~l~~~~v~v-e~ 96 (97)
T PF00355_consen 59 GGVIVCPCHGWRFDLDTGECVGGPAPRPLPLYPVKV-EG 96 (97)
T ss_dssp TTEEEETTTTEEEETTTSBEEESTTCSBSTEEEEEE-ET
T ss_pred cCEEEeCCcCCEEeCCCceEecCCCCCCcCCCCeEE-eC
Confidence 578999999999999 69999999999999999887 44
No 13
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=99.81 E-value=7.4e-20 Score=145.01 Aligned_cols=92 Identities=14% Similarity=0.208 Sum_probs=79.2
Q ss_pred eeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCCC-C
Q 025100 138 VDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDF-G 216 (258)
Q Consensus 138 VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd~-g 216 (258)
+.+++|++|+.+.|... ++++|++ .+++++|+.++|||+||++..+..+. +
T Consensus 7 ~~~~~l~~g~~~~~~~~-~~i~v~~---------------------------~~g~~~A~~~~CpH~g~~L~~G~~~~~~ 58 (106)
T PRK09965 7 CPVADLPEGEALRVDTS-PVIALFN---------------------------VGGEFYAIDDRCSHGNASLSEGYLEDDA 58 (106)
T ss_pred eeHHHcCCCCeEEEeCC-CeEEEEE---------------------------ECCEEEEEeCcCCCCCCCCCceEECCCC
Confidence 57889999999999887 7888875 27899999999999999987554444 6
Q ss_pred EEEccCCCeEeCC-CCceecCCCCCCCcCceEEEeeCCEEEEC
Q 025100 217 GWFCPCHGSHYDI-SGRIRKGPAPYNLEVPSYSFLDENKMLIG 258 (258)
Q Consensus 217 g~~CPCHGS~FDl-sGrv~~GPAp~nL~vppy~~~~d~~I~IG 258 (258)
.+.||||||+||+ +|+++.+|+...|+.++.++ +++.|+|.
T Consensus 59 ~i~Cp~Hg~~Fd~~tG~~~~~p~~~~l~~y~v~v-~~g~v~v~ 100 (106)
T PRK09965 59 TVECPLHAASFCLRTGKALCLPATDPLRTYPVHV-EGGDIFID 100 (106)
T ss_pred EEEcCCCCCEEEcCCCCeeCCCCCCCcceEeEEE-ECCEEEEE
Confidence 7999999999999 99999989888999888886 78899873
No 14
>cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. It is commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. YhfW is found in bacteria, some eukaryotes and archaea.
Probab=99.81 E-value=1.3e-19 Score=141.07 Aligned_cols=83 Identities=34% Similarity=0.640 Sum_probs=73.9
Q ss_pred eCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCCCCEE
Q 025100 139 DLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGW 218 (258)
Q Consensus 139 dlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd~gg~ 218 (258)
.+++|++|+.+.+.+.|++|+|++. .+++++|+.++|||+||.+.++.. .+.|
T Consensus 4 ~~~dl~~g~~~~~~~~g~~v~v~r~--------------------------~~g~~~A~~~~CpH~g~~l~~g~~-~~~i 56 (91)
T cd03477 4 DIEDLAPGEGGVVNIGGKRLAVYRD--------------------------EDGVLHTVSATCTHLGCIVHWNDA-EKSW 56 (91)
T ss_pred chhhcCCCCeEEEEECCEEEEEEEC--------------------------CCCCEEEEcCcCCCCCCCCcccCC-CCEE
Confidence 5688999999999999999999862 378999999999999999987654 3689
Q ss_pred EccCCCeEeCCCCceecCCCCCCCcCceEE
Q 025100 219 FCPCHGSHYDISGRIRKGPAPYNLEVPSYS 248 (258)
Q Consensus 219 ~CPCHGS~FDlsGrv~~GPAp~nL~vppy~ 248 (258)
.||||||+||.+|+++.+|+..+|+.++.+
T Consensus 57 ~CP~Hg~~Fd~~G~~~~~Pa~~~l~~y~v~ 86 (91)
T cd03477 57 DCPCHGSRFSYDGEVIEGPAVSGLKPADDA 86 (91)
T ss_pred ECCCCCCEECCCCcEeeCCCCCCCCeeEee
Confidence 999999999999999999999999976665
No 15
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=99.80 E-value=2.7e-19 Score=141.36 Aligned_cols=92 Identities=20% Similarity=0.273 Sum_probs=79.7
Q ss_pred eeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCCCCE
Q 025100 138 VDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGG 217 (258)
Q Consensus 138 VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd~gg 217 (258)
+.+++|++|+.+.+.+.|++++|+++ .+++++|+.++|||+||++..+..+.+.
T Consensus 5 ~~~~~l~~g~~~~~~~~~~~~~~~~~--------------------------~~g~~~A~~n~CpH~g~~L~~g~~~g~~ 58 (108)
T cd03474 5 CSLDDVWEGEMELVDVDGEEVLLVAP--------------------------EGGEFRAFQGICPHQEIPLAEGGFDGGV 58 (108)
T ss_pred eehhccCCCceEEEEECCeEEEEEEc--------------------------cCCeEEEEcCcCCCCCCCcccCcccCCE
Confidence 57889999999999999988877753 3789999999999999999887666678
Q ss_pred EEccCCCeEeCC-CCceecCCCCCCCcCceEEEeeCCEEEE
Q 025100 218 WFCPCHGSHYDI-SGRIRKGPAPYNLEVPSYSFLDENKMLI 257 (258)
Q Consensus 218 ~~CPCHGS~FDl-sGrv~~GPAp~nL~vppy~~~~d~~I~I 257 (258)
+.||||||+||+ +|.+. +|+..+|+.+++++ +++.|+|
T Consensus 59 i~CP~Hg~~Fdl~~G~~~-~~~~~~L~~~~v~v-~~g~v~v 97 (108)
T cd03474 59 LTCRAHLWQFDADTGEGL-NPRDCRLARYPVKV-EGGDILV 97 (108)
T ss_pred EEeCCcCCEEECCCcccc-CCCCCccceEeEEE-ECCEEEE
Confidence 999999999999 77765 68888999888886 7888987
No 16
>cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the i
Probab=99.80 E-value=2.5e-19 Score=142.53 Aligned_cols=93 Identities=26% Similarity=0.448 Sum_probs=80.5
Q ss_pred eeCCCCC-CCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCC-CC
Q 025100 138 VDLSSIE-PGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAG-DF 215 (258)
Q Consensus 138 VdlsdL~-pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~g-d~ 215 (258)
..+++|+ +|+.+.+.+.|++|+|+|. .+++++|+.++|||+||++.++.. +.
T Consensus 5 ~~~~el~~~g~~~~~~~~~~~i~v~r~--------------------------~~g~~~a~~n~CpH~g~~L~~g~~~~~ 58 (118)
T cd03469 5 GHSSELPEPGDYVTLELGGEPLVLVRD--------------------------RDGEVRAFHNVCPHRGARLCEGRGGNA 58 (118)
T ss_pred EEHHHCCCCCCEEEEEECCccEEEEEC--------------------------CCCCEEEEEEeCCCCCCEeeeccCCCC
Confidence 4678899 9999999999999999863 378999999999999999998766 67
Q ss_pred CEEEccCCCeEeCCCCceecCCCCCC----------CcCceEEEeeCCEEEE
Q 025100 216 GGWFCPCHGSHYDISGRIRKGPAPYN----------LEVPSYSFLDENKMLI 257 (258)
Q Consensus 216 gg~~CPCHGS~FDlsGrv~~GPAp~n----------L~vppy~~~~d~~I~I 257 (258)
+.+.||||||+||+.|+++.+|+..+ |+.++.++ .++.|+|
T Consensus 59 ~~i~Cp~Hg~~Fd~~G~~~~~P~~~~~~~~~~~~~~L~~~~v~~-~~g~v~v 109 (118)
T cd03469 59 GRLVCPYHGWTYDLDGKLVGVPREEGFPGFDKEKLGLRTVPVEE-WGGLIFV 109 (118)
T ss_pred CEEECCCCCCEECCCCcEEeCCcccccCCCCHHHCCCeEEEEEE-ECCEEEE
Confidence 89999999999999999999987643 77666664 7888887
No 17
>TIGR02694 arsenite_ox_S arsenite oxidase, small subunit. This model represents the small subunit of an arsenite oxidase complex. It is a Rieske protein and appears to rely on the Tat (twin-arginine translocation) system to cross the membrane. Although this enzyme could run in the direction of arsenate reduction to arsenite in principle, the relevant biological function is arsenite oxidation for energy metabolism, not arsenic resistance. Homologs to both large (TIGR02693) and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7.
Probab=99.79 E-value=3.8e-19 Score=147.29 Aligned_cols=102 Identities=22% Similarity=0.385 Sum_probs=81.0
Q ss_pred eeeCCCCCCCCeEEEEECC--EEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCC
Q 025100 137 EVDLSSIEPGSTVTVKWRG--KPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGD 214 (258)
Q Consensus 137 ~VdlsdL~pG~~~~v~w~G--kPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd 214 (258)
.+.+++|++|+++.|.+.+ .+++|++... |..... ..+++++|++++|||+||++.++. +
T Consensus 9 v~~~~dl~~g~~~~~~~~~~~~~~~v~~~~~----------------~~~~~~-~~~G~~~A~~~~CpH~g~~L~~~~-~ 70 (129)
T TIGR02694 9 VANISELKLNEPLDFNYPDASSPGVLLKLGT----------------PVEGGV-GPDGDIVAFSTLCTHMGCPVSYSA-D 70 (129)
T ss_pred EEeHHHCCCCCCEEEecCCCCCCEEEEecCC----------------cccCcc-ccCCEEEEEeCcCCCCCccccccc-C
Confidence 3688999999999999876 4788887321 111111 137899999999999999998764 5
Q ss_pred CCEEEccCCCeEeCC-C-CceecCCCCCCCcCceEEEeeCCEEE
Q 025100 215 FGGWFCPCHGSHYDI-S-GRIRKGPAPYNLEVPSYSFLDENKML 256 (258)
Q Consensus 215 ~gg~~CPCHGS~FDl-s-Grv~~GPAp~nL~vppy~~~~d~~I~ 256 (258)
.+.|.||||||+||+ + |+++.||+..+|+.+++++.+++.|+
T Consensus 71 ~~~i~CP~Hga~Fdl~tgG~~~~gP~~~~L~~y~v~v~~~G~V~ 114 (129)
T TIGR02694 71 NKTFNCPCHFSVFDPEKGGQQVWGQATQNLPQIVLRVADNGDIF 114 (129)
T ss_pred CCEEEcCCCCCEECCCCCCcEECCCCCCCCCeeEEEEECCCeEE
Confidence 578999999999999 4 69999999999999999985456654
No 18
>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.
Probab=99.76 E-value=5e-18 Score=131.36 Aligned_cols=87 Identities=36% Similarity=0.630 Sum_probs=77.3
Q ss_pred eeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCCCCE
Q 025100 138 VDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGG 217 (258)
Q Consensus 138 VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd~gg 217 (258)
...++|++|..+.+...|+.++|++. .+++++|+.+.|||.||++..+..+.+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~v~~~--------------------------~~~~~~a~~~~CpH~g~~l~~~~~~~~~ 58 (98)
T cd03467 5 GALSELPPGGGRVVVVGGGPVVVVRR--------------------------EGGEVYALSNRCTHQGCPLSEGEGEDGC 58 (98)
T ss_pred eeccccCCCceEEEEECCeEEEEEEe--------------------------CCCEEEEEcCcCCCCCccCCcCccCCCE
Confidence 45677899999999999999999863 3679999999999999999887656789
Q ss_pred EEccCCCeEeCC-CCceecCCCCCCCcCceEEEe
Q 025100 218 WFCPCHGSHYDI-SGRIRKGPAPYNLEVPSYSFL 250 (258)
Q Consensus 218 ~~CPCHGS~FDl-sGrv~~GPAp~nL~vppy~~~ 250 (258)
+.||||||+||+ +|+++.||+..+|+.++.++.
T Consensus 59 i~Cp~H~~~f~~~~G~~~~~p~~~~l~~~~v~~~ 92 (98)
T cd03467 59 IVCPCHGSRFDLRTGEVVSGPAPRPLPKYPVKVE 92 (98)
T ss_pred EEeCCCCCEEeCCCccCcCCCCCCCcCEEEEEEe
Confidence 999999999999 999999999999998888863
No 19
>cd03471 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The cytochrome b6f complex from Mastigocladus laminosus, a thermophilic cyanobacterium, contains four large subunits, including cytochrome f, cytochrome b6, the Rieske ISP, and subunit IV; as well as four small hydrophobic subunits, PetG, PetL, PetM, and PetN. Rieske ISP, one of the large subunits of the cytochrome bc-type complexes, is involved in respiratory and photosynthetic electron transfer. The core of the chloroplast b6f complex is similar to the analogous respiratory cytochrome bc(1) complex, but the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.76 E-value=3.8e-18 Score=141.04 Aligned_cols=66 Identities=38% Similarity=0.809 Sum_probs=58.7
Q ss_pred CCcE--EEEEccccCCCeeccCCCCCCCEEEccCCCeEeCCCCceecCCCCCCCcCceEEEeeCCEEEEC
Q 025100 191 NPEW--LVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 258 (258)
Q Consensus 191 ~ge~--~a~~~vCTHLGC~p~~~~gd~gg~~CPCHGS~FDlsGrv~~GPAp~nL~vppy~~~~d~~I~IG 258 (258)
++++ +|++++|||+||++.++.+ .+.++||||||+||.+|+++.||++.+|+++++++ +++.|+|+
T Consensus 43 dg~i~~~A~~~~CpH~G~~l~~~~~-~~~i~CP~Hg~~Fd~tG~~~~gPa~~~L~~y~V~v-edg~I~V~ 110 (126)
T cd03471 43 DKTIANYGINAVCTHLGCVVPWNAA-ENKFKCPCHGSQYDATGKVVRGPAPLSLALVHATV-DDDKVVLS 110 (126)
T ss_pred CCeEEEEEecCCCcCCCCCcCccCC-CCEEEcCCCCCEECCCCCEecCCCCCCCceEeEEE-ECCEEEEE
Confidence 6766 8999999999999887654 36899999999999999999999999999999987 78999873
No 20
>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH). The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia.
Probab=99.75 E-value=7.8e-18 Score=135.64 Aligned_cols=93 Identities=14% Similarity=0.118 Sum_probs=79.6
Q ss_pred eeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCCCCE
Q 025100 138 VDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGG 217 (258)
Q Consensus 138 VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd~gg 217 (258)
..+++|++|+.+.++..|.+++|+|. .+++++|+.++|||+|+.|..+..+.+.
T Consensus 6 ~~~~dl~~g~~~~~~~~g~~i~l~r~--------------------------~~g~~~a~~n~CpH~ga~L~~G~~~~~~ 59 (115)
T cd03531 6 GLARDFRDGKPHGVEAFGTKLVVFAD--------------------------SDGALNVLDAYCRHMGGDLSQGTVKGDE 59 (115)
T ss_pred EEHHHCCCCCeEEEEECCeEEEEEEC--------------------------CCCCEEEEcCcCCCCCCCCccCcccCCE
Confidence 46778999999999999999999862 4789999999999999999988777789
Q ss_pred EEccCCCeEeCCCCceecCCC------CCCCcCceEEEeeCCEEEE
Q 025100 218 WFCPCHGSHYDISGRIRKGPA------PYNLEVPSYSFLDENKMLI 257 (258)
Q Consensus 218 ~~CPCHGS~FDlsGrv~~GPA------p~nL~vppy~~~~d~~I~I 257 (258)
+.||+|||+||++|+++.-|+ ...|..+|.++ .++.|+|
T Consensus 60 i~CP~Hg~~fd~~G~~~~~p~~~~~p~~~~l~~ypv~~-~~g~v~v 104 (115)
T cd03531 60 IACPFHDWRWGGDGRCKAIPYARRVPPLARTRAWPTLE-RNGQLFV 104 (115)
T ss_pred EECCCCCCEECCCCCEEECCcccCCCcccccceEeEEE-ECCEEEE
Confidence 999999999999999998764 24566666664 7888877
No 21
>cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b. CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner
Probab=99.75 E-value=7.2e-18 Score=138.73 Aligned_cols=93 Identities=18% Similarity=0.239 Sum_probs=80.8
Q ss_pred eeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCCCCE
Q 025100 138 VDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGG 217 (258)
Q Consensus 138 VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd~gg 217 (258)
+.+++|++|+.+.+++.|++++|+|. .+++++|+.+.|||.||++..+..+.+.
T Consensus 22 ~~~~el~~g~~~~~~v~g~~l~l~r~--------------------------~~g~v~A~~n~CpH~g~~L~~G~~~~~~ 75 (129)
T cd04337 22 EFSKDLKMDTMVPFELFGQPWVLFRD--------------------------EDGTPGCIRDECAHRACPLSLGKVIEGR 75 (129)
T ss_pred EEHHHCCCCCeEEEEECCcEEEEEEC--------------------------CCCcEEEEeCcCCCCcCCcccCcEeCCE
Confidence 57788999999999999999999863 3789999999999999999987766789
Q ss_pred EEccCCCeEeCCCCceecCCCC----CCCcCceEEEeeCCEEEE
Q 025100 218 WFCPCHGSHYDISGRIRKGPAP----YNLEVPSYSFLDENKMLI 257 (258)
Q Consensus 218 ~~CPCHGS~FDlsGrv~~GPAp----~nL~vppy~~~~d~~I~I 257 (258)
+.||||||+||.+|+++..|+. .+|+.++.++ +++.|+|
T Consensus 76 i~CP~Hgw~Fd~tG~~~~~P~~~~~~~~l~~y~v~v-~~g~V~V 118 (129)
T cd04337 76 IQCPYHGWEYDGDGECTKMPSTKCLNVGIAALPCME-QDGMIWV 118 (129)
T ss_pred EEeCCCCCEECCCCCEEeCCcCCCccCCcceEeEEE-ECCEEEE
Confidence 9999999999999999998864 3677777775 7888876
No 22
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=99.74 E-value=1.1e-17 Score=133.89 Aligned_cols=93 Identities=19% Similarity=0.357 Sum_probs=78.7
Q ss_pred eeeCCCCCCCCeEEEEECC-EEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCCC
Q 025100 137 EVDLSSIEPGSTVTVKWRG-KPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDF 215 (258)
Q Consensus 137 ~VdlsdL~pG~~~~v~w~G-kPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd~ 215 (258)
.+.+++|++|..+.|.+.+ +.+++++ .+++++|+.|+|||.||++..+..+.
T Consensus 8 ~c~~~dl~~~~~~~v~~~~~~~~~~~~---------------------------~~g~v~A~~n~CpH~~~~l~~g~v~~ 60 (106)
T COG2146 8 ICKVDDLPEGGGVRVLVGGGRFALVVR---------------------------ADGEVFAIDNRCPHAGAPLSRGLVEG 60 (106)
T ss_pred EEehHhcCCCCceEEEecCCEEEEEEe---------------------------cCCEEEEEeCcCCCCCCcccccEeCC
Confidence 3678999999999999955 6776654 38999999999999999987776554
Q ss_pred C-EEEccCCCeEeCC-CCceecCCCCCCCcCceEEEeeCCEEEE
Q 025100 216 G-GWFCPCHGSHYDI-SGRIRKGPAPYNLEVPSYSFLDENKMLI 257 (258)
Q Consensus 216 g-g~~CPCHGS~FDl-sGrv~~GPAp~nL~vppy~~~~d~~I~I 257 (258)
+ .+.||||+++||+ ||+++.+|+...|+++|.++ +++.|+|
T Consensus 61 ~~~i~Cp~H~a~Fdl~tG~~~~~p~~~~l~~y~vrv-e~g~v~v 103 (106)
T COG2146 61 DETVVCPLHGARFDLRTGECLEPPAGKTLKTYPVRV-EGGRVFV 103 (106)
T ss_pred CCEEECCccCCEEEcCCCceecCCCCCceeEEeEEE-ECCEEEE
Confidence 4 5999999999999 99999998755588888887 7999987
No 23
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=99.73 E-value=1.8e-17 Score=132.77 Aligned_cols=93 Identities=11% Similarity=0.144 Sum_probs=77.2
Q ss_pred eeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCee-ccCCCC-C-
Q 025100 138 VDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCI-PLPNAG-D- 214 (258)
Q Consensus 138 VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~-p~~~~g-d- 214 (258)
+.+++|++|+.+.|..+|+.|+|+|. ..+++|+|+.+.|||.|+. +..+.. +
T Consensus 8 ~~~~dl~~g~~~~v~v~g~~i~l~~~-------------------------~~~g~~~A~~n~CpH~~~~~L~~G~~~~~ 62 (108)
T PRK09511 8 CKIDDILPGTGVCALVGDEQVAIFRP-------------------------YHDEQVFAISNIDPFFQASVLSRGLIAEH 62 (108)
T ss_pred eEHhHcCCCceEEEEECCEEEEEEEE-------------------------CCCCEEEEEeCcCCCCCCcccCCceEccC
Confidence 68899999999999999999999861 0268999999999999996 554432 1
Q ss_pred CC--EEEccCCCeEeCC-CCceecCCCCCCCcCceEEEeeCCEEEE
Q 025100 215 FG--GWFCPCHGSHYDI-SGRIRKGPAPYNLEVPSYSFLDENKMLI 257 (258)
Q Consensus 215 ~g--g~~CPCHGS~FDl-sGrv~~GPAp~nL~vppy~~~~d~~I~I 257 (258)
.+ .+.||+||++||+ ||+++..|+ .+|++||.++ +|+.|+|
T Consensus 63 ~g~~~V~CP~H~~~Fdl~TG~~~~~~~-~~l~typV~v-e~g~V~v 106 (108)
T PRK09511 63 QGELWVASPLKKQRFRLSDGLCMEDEQ-FSVKHYDARV-KDGVVQL 106 (108)
T ss_pred CCeEEEECCCCCCEEECCCcccCCCCC-ccEeeEeEEE-ECCEEEE
Confidence 12 3999999999999 999997554 6899999987 8999987
No 24
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=99.72 E-value=1.6e-17 Score=130.77 Aligned_cols=93 Identities=13% Similarity=0.229 Sum_probs=76.2
Q ss_pred eeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCC-CeeccCCCCCCC
Q 025100 138 VDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHL-GCIPLPNAGDFG 216 (258)
Q Consensus 138 VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHL-GC~p~~~~gd~g 216 (258)
+.+++|++|+.+.+...|++++|++. .+++++|+.+.|||. ++++..+..+.+
T Consensus 6 ~~~~el~~g~~~~~~v~g~~l~v~r~--------------------------~~~~~~a~~~~CpH~g~~~L~~g~~~~~ 59 (105)
T TIGR02378 6 CAIDDIPEETGVCVLLGDTQIAIFRV--------------------------PGDQVFAIQNMCPHKRAFVLSRGIVGDA 59 (105)
T ss_pred EEHHHCCCCCcEEEEECCEEEEEEEe--------------------------CCCcEEEEeCcCCCCCCccccceEEccC
Confidence 57889999999999999999999862 257899999999999 666665432223
Q ss_pred ----EEEccCCCeEeCC-CCceecCCCCCCCcCceEEEeeCCEEEEC
Q 025100 217 ----GWFCPCHGSHYDI-SGRIRKGPAPYNLEVPSYSFLDENKMLIG 258 (258)
Q Consensus 217 ----g~~CPCHGS~FDl-sGrv~~GPAp~nL~vppy~~~~d~~I~IG 258 (258)
.+.||||||+||+ +|++..+|. ..|+++|.++ +++.|+|+
T Consensus 60 ~~~~~i~Cp~Hg~~Fdl~tG~~~~~~~-~~L~~y~v~v-~~g~v~v~ 104 (105)
T TIGR02378 60 QGELWVACPLHKRNFRLEDGRCLEDDS-GSVRTYEVRV-EDGRVYVA 104 (105)
T ss_pred CCcEEEECCcCCCEEEcCCccccCCCC-ccEeeEeEEE-ECCEEEEe
Confidence 3999999999999 999997764 5799888886 78899884
No 25
>cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PhDO and CBDO are two-component RO systems, containing oxygenase and reductase components. PhDO catalyzes the dihydroxylation of phthalate to form th
Probab=99.72 E-value=2.6e-17 Score=137.47 Aligned_cols=94 Identities=17% Similarity=0.175 Sum_probs=79.7
Q ss_pred eeeCCCCC-CCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCCC
Q 025100 137 EVDLSSIE-PGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDF 215 (258)
Q Consensus 137 ~VdlsdL~-pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd~ 215 (258)
.+.+++|+ +|+.+.+.+.|.+++|+|. .+++++|+.++|||.||.+.++..+.
T Consensus 25 v~~~~eL~~~g~~~~~~~~g~~i~v~r~--------------------------~~G~v~A~~n~CpHrG~~L~~G~~~~ 78 (144)
T cd03479 25 VALSSELTEDGQPVRVRLLGEDLVAFRD--------------------------TSGRVGLLDEHCPHRGASLVFGRVEE 78 (144)
T ss_pred EEEHHHCCCCCCEEEEEECCcEEEEEEe--------------------------CCCCEEEEcCcCCCCCCcccCCcccC
Confidence 35788898 7999999999999998762 37899999999999999999887667
Q ss_pred CEEEccCCCeEeCCCCceecCCCCC---------CCcCceEEEeeCCEEEE
Q 025100 216 GGWFCPCHGSHYDISGRIRKGPAPY---------NLEVPSYSFLDENKMLI 257 (258)
Q Consensus 216 gg~~CPCHGS~FDlsGrv~~GPAp~---------nL~vppy~~~~d~~I~I 257 (258)
+.|.||||||+||.+|+++..|+.. .|..++.++ .++.|+|
T Consensus 79 ~~i~CP~Hgw~F~~~G~~~~~P~~~~~~~~~~~~~l~~~~v~~-~~G~I~V 128 (144)
T cd03479 79 CGLRCCYHGWKFDVDGQCLEMPSEPPDSQLKQKVRQPAYPVRE-RGGLVWA 128 (144)
T ss_pred CEEEccCCCcEECCCCCEEECCCCccccCCccccCcceEeEEE-ECCEEEE
Confidence 8999999999999999999988643 466666654 7888887
No 26
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=99.72 E-value=2.4e-17 Score=129.72 Aligned_cols=92 Identities=15% Similarity=0.146 Sum_probs=75.6
Q ss_pred eeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeec-cCCCC---
Q 025100 138 VDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIP-LPNAG--- 213 (258)
Q Consensus 138 VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p-~~~~g--- 213 (258)
+.+++|++|+.+.+...|++|+|+|. .+++++|+.+.|||.|+++ ..+..
T Consensus 5 ~~~~~l~~g~~~~~~~~g~~i~l~r~--------------------------~~g~~~A~~~~CpH~g~~ll~~G~~~~~ 58 (103)
T cd03529 5 CALDDLPPGSGVAALVGDTQIAIFRL--------------------------PGREVYAVQNMDPHSRANVLSRGIVGDI 58 (103)
T ss_pred eEHHHCCCCCcEEEEECCEEEEEEEe--------------------------CCCeEEEEeCcCCCCCCcccCCceEccc
Confidence 47789999999999999999999862 2459999999999999974 33321
Q ss_pred -CCCEEEccCCCeEeCC-CCceecCCCCCCCcCceEEEeeCCEEEE
Q 025100 214 -DFGGWFCPCHGSHYDI-SGRIRKGPAPYNLEVPSYSFLDENKMLI 257 (258)
Q Consensus 214 -d~gg~~CPCHGS~FDl-sGrv~~GPAp~nL~vppy~~~~d~~I~I 257 (258)
+.+.+.||+|||+||+ +|+++.+|.. +|+.++.++ +++.|+|
T Consensus 59 ~~~~~i~Cp~Hg~~Fdl~tG~~~~~p~~-~l~~y~v~~-~~g~v~v 102 (103)
T cd03529 59 GGEPVVASPLYKQHFSLKTGRCLEDEDV-SVATFPVRV-EDGEVYV 102 (103)
T ss_pred CCCeEEECCCCCCEEEcCCCCccCCCCc-cEeeEeEEE-ECCEEEE
Confidence 1247999999999998 9999998864 688877776 7889987
No 27
>cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degrad
Probab=99.72 E-value=3.2e-17 Score=131.87 Aligned_cols=92 Identities=17% Similarity=0.251 Sum_probs=79.7
Q ss_pred eeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCCCCE
Q 025100 138 VDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGG 217 (258)
Q Consensus 138 VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd~gg 217 (258)
+..++|+ |+.+.++..|.+++|+|. .+++++|+.++|||.|+++..+..+.+.
T Consensus 10 ~~~~el~-~~~~~~~~~g~~i~l~r~--------------------------~~g~~~a~~n~CpH~g~~L~~G~~~~~~ 62 (116)
T cd03532 10 AWADELG-DKPLARTLLGEPVVLYRT--------------------------QDGRVAALEDRCPHRSAPLSKGSVEGGG 62 (116)
T ss_pred EEHHHcC-CCcEEEEECCceEEEEEC--------------------------CCCCEEEeCCcCCCCCCCccCCcccCCE
Confidence 5678888 999999999999999862 3789999999999999999887767789
Q ss_pred EEccCCCeEeCCCCceecCCCC------CCCcCceEEEeeCCEEEE
Q 025100 218 WFCPCHGSHYDISGRIRKGPAP------YNLEVPSYSFLDENKMLI 257 (258)
Q Consensus 218 ~~CPCHGS~FDlsGrv~~GPAp------~nL~vppy~~~~d~~I~I 257 (258)
+.||+|||+||.+|+++..|+. .+|+.++.++ .++.|+|
T Consensus 63 i~Cp~Hg~~fd~~G~~~~~p~~~~~~~~~~l~~~~v~~-~~g~v~v 107 (116)
T cd03532 63 LVCGYHGLEFDSDGRCVHMPGQERVPAKACVRSYPVVE-RDALIWI 107 (116)
T ss_pred EEeCCCCcEEcCCCCEEeCCCCCCCCCccccccCCEEE-ECCEEEE
Confidence 9999999999999999998764 3688888885 7888886
No 28
>cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane. This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis.
Probab=99.71 E-value=3.9e-17 Score=135.06 Aligned_cols=94 Identities=14% Similarity=0.105 Sum_probs=80.0
Q ss_pred eeeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCCCC
Q 025100 137 EVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFG 216 (258)
Q Consensus 137 ~VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd~g 216 (258)
.+.+++|++|+.+.+++.|++|+|+|. .+++++|+.++|+|.|++|..+..+.+
T Consensus 21 v~~~~el~~~~~~~~~v~g~~ivl~r~--------------------------~~G~v~A~~n~CpHrga~L~~G~~~~~ 74 (134)
T cd04338 21 LYLLKDVPTDAPLGLSVYDEPFVLFRD--------------------------QNGQLRCLEDRCPHRLAKLSEGQLIDG 74 (134)
T ss_pred EEEHHHCCCCCCEEEEECCceEEEEEc--------------------------CCCCEEEEcCcCCCCcCcccCCeecCC
Confidence 468899999999999999999999863 378999999999999999998777778
Q ss_pred EEEccCCCeEeCCCCceecCCCC---------CCCcCceEEEeeCCEEEE
Q 025100 217 GWFCPCHGSHYDISGRIRKGPAP---------YNLEVPSYSFLDENKMLI 257 (258)
Q Consensus 217 g~~CPCHGS~FDlsGrv~~GPAp---------~nL~vppy~~~~d~~I~I 257 (258)
.+.||+|||+||.+|+++..|.. ..|+.++.++ .++.|+|
T Consensus 75 ~i~CP~Hgw~Fd~~G~~~~~P~~~~~~~~~~~~~l~~y~v~~-~~G~V~V 123 (134)
T cd04338 75 KLECLYHGWQFGGEGKCVKIPQLPADAKIPKNACVKSYEVRD-SQGVVWM 123 (134)
T ss_pred EEEccCCCCEECCCCCEEECCCCCccCCCCcccCcceEeEEE-ECCEEEE
Confidence 99999999999999999987642 3466666664 7888887
No 29
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=99.68 E-value=2.7e-16 Score=130.08 Aligned_cols=92 Identities=18% Similarity=0.306 Sum_probs=76.3
Q ss_pred eeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCC--CCC
Q 025100 138 VDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNA--GDF 215 (258)
Q Consensus 138 VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~--gd~ 215 (258)
+..++|++|+.+.|++.|++++|+| .+++++|+.+.|||.|+.+..+. .+.
T Consensus 19 ~~~~el~~g~~~~~~~~g~~i~l~r---------------------------~~g~v~A~~n~CpHrg~~L~~g~~~~~~ 71 (136)
T cd03548 19 LFSHELEEGEPKGIQLCGEPILLRR---------------------------VDGKVYALKDRCLHRGVPLSKKPECFTK 71 (136)
T ss_pred EEHHHCCCCCeEEEEECCcEEEEEe---------------------------cCCEEEEEeCcCcCCCCccccCcccccC
Confidence 5778899999999999999999975 27899999999999999988653 345
Q ss_pred CEEEccCCCeEeCC-CCceecC---CC-----CCCCcCceEEEeeCCEEEE
Q 025100 216 GGWFCPCHGSHYDI-SGRIRKG---PA-----PYNLEVPSYSFLDENKMLI 257 (258)
Q Consensus 216 gg~~CPCHGS~FDl-sGrv~~G---PA-----p~nL~vppy~~~~d~~I~I 257 (258)
+.+.||+|||+||+ +|+++.. |. ...|+.+|+++ .++.|+|
T Consensus 72 ~~i~Cp~Hgw~Fdl~tG~~~~~~~~p~~~~~~~~~L~~ypv~~-~~g~V~v 121 (136)
T cd03548 72 GTITCWYHGWTYRLDDGKLVTILANPDDPLIGRTGLKTYPVEE-AKGMIFV 121 (136)
T ss_pred CEEEecCCccEEeCCCccEEEcccCCCccccccCCCceEeEEE-ECCEEEE
Confidence 78999999999998 9999863 32 24577777665 7888876
No 30
>cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. SoxF is a subunit of the terminal oxidase supercomplex SoxM in the plasma membrane of Sulfolobus acidocaldarius that combines features of a cytochrome bc(1) complex and a cytochrome. The Rieske domain of SoxF has a 12 residue insertion which is not found in eukaryotic and bacterial Rieske proteins and is thought to influence the redox properties of the iron-sulfur cluster. SoxL is a Rieske protein which may be part of an archaeal bc-complex homologue whose physiological function is still unknown. SoxL has two features not seen in other Rieske proteins; (i) a significantly greater distance between the two cluster-binding sites and (ii) an unexpected Pro - Asp substitution at one of the cluster binding sites. SoxF and SoxL are found in archaea and in bacteria.
Probab=99.67 E-value=2.2e-16 Score=136.58 Aligned_cols=114 Identities=23% Similarity=0.420 Sum_probs=75.1
Q ss_pred CCCCCCe--EEEEEC--CEEEEEEeCCHHHHHhhccCCCCCCCCcccc-cccc-----cCCcEEEEEccccCCCeeccCC
Q 025100 142 SIEPGST--VTVKWR--GKPVFIRRRTEEDIKLANSVDLGSLRDPQQD-AERV-----KNPEWLVVVGVCTHLGCIPLPN 211 (258)
Q Consensus 142 dL~pG~~--~~v~w~--GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~-~~R~-----~~ge~~a~~~vCTHLGC~p~~~ 211 (258)
+|+.++. +.|.+. +.|-|+++...+--...... .....=|++. .++. .+++++|++++|||+||.+.+.
T Consensus 16 ~~~~n~~~~~~F~YP~~~~p~~li~lg~~~~~~~~~~-~~~~~~~~~g~~y~~~gGVGp~g~IvA~S~iCpHlGc~l~~~ 94 (171)
T cd03475 16 QLQVNSPKIYLFAYPLTNEPCFLLNLGASSGQPVVEI-PNPVKYPGTGGQYTWPGGVGPNKSIVAFSAICQHLGCQPPPI 94 (171)
T ss_pred cccCCCCceEEEeCCCCCCCeEEEecCCccCCceecc-cccceecCCCceeeccCccCCCCEEEEEeCcCCCCCCccccc
Confidence 4777777 556654 78889988643211100000 0001112221 1232 3789999999999999988641
Q ss_pred ---------------CCCCCEEEccCCCeEeCC-CC-ceecCCCCCCCcCceEEEee-CCEEE
Q 025100 212 ---------------AGDFGGWFCPCHGSHYDI-SG-RIRKGPAPYNLEVPSYSFLD-ENKML 256 (258)
Q Consensus 212 ---------------~gd~gg~~CPCHGS~FDl-sG-rv~~GPAp~nL~vppy~~~~-d~~I~ 256 (258)
..+.+.|+||||||+||+ +| .++.|||+++|+++++++.+ .+.|+
T Consensus 95 ~~y~~~~~~~~~~~g~~~~~~i~CPcHgS~FD~~tGg~v~~GPA~~pLp~~~L~~d~~~d~iy 157 (171)
T cd03475 95 VSYPSYYPPDKAPGLASKGAVIHCCCHGSTYDPYKGGVVLTGPAPRPLPAVILEYDSSTDDLY 157 (171)
T ss_pred ccccccccccccccccccCCEEEcCCCCCEEeCCCCCeEcCCCCCCCcCEeEEEEeCCCCcEE
Confidence 123578999999999999 55 78889999999999998842 34554
No 31
>cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PaO expression increases upon physical wounding of plant leaves and is thought to catalyze a key step in chlorophyll degradation. The
Probab=99.66 E-value=3.7e-16 Score=129.96 Aligned_cols=94 Identities=17% Similarity=0.289 Sum_probs=77.8
Q ss_pred eeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCC-CC
Q 025100 138 VDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGD-FG 216 (258)
Q Consensus 138 VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd-~g 216 (258)
+.+++|++|+.+.+++.|++|+|+|.. .+++++|+.++|||.|++|..+... .+
T Consensus 22 ~~~~el~~g~~~~~~~~g~~i~v~r~~-------------------------~dG~~~A~~n~CpHrga~L~~G~~~~~~ 76 (138)
T cd03480 22 AYVEDLDPSRPTPFTLLGRDLVIWWDR-------------------------NSQQWRAFDDQCPHRLAPLSEGRIDEEG 76 (138)
T ss_pred EEHHHCCCCCcEEEEECCeeEEEEEEC-------------------------CCCEEEEEcCCCcCCcCccccceEcCCC
Confidence 578899999999999999999998620 2799999999999999999876543 46
Q ss_pred EEEccCCCeEeCCCCceecCCC-----------CCCCcCceEEEeeCCEEEE
Q 025100 217 GWFCPCHGSHYDISGRIRKGPA-----------PYNLEVPSYSFLDENKMLI 257 (258)
Q Consensus 217 g~~CPCHGS~FDlsGrv~~GPA-----------p~nL~vppy~~~~d~~I~I 257 (258)
.+.||+|||+||.+|+++..|. ...|..+|.++ .++.|+|
T Consensus 77 ~i~CP~Hgw~Fd~tG~~~~~P~~~~~g~~~~~~~~~l~~ypv~v-~~g~V~V 127 (138)
T cd03480 77 CLECPYHGWSFDGSGSCQRIPQAAEGGKAHTSPRACVASLPTAV-RQGLLFV 127 (138)
T ss_pred EEEeCCCCCEECCCCCEEECCCCccccccCCCcccccceEeEEE-ECCEEEE
Confidence 8999999999999999998763 24566666664 7888877
No 32
>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production.
Probab=99.66 E-value=2.1e-16 Score=127.41 Aligned_cols=88 Identities=15% Similarity=0.239 Sum_probs=72.0
Q ss_pred eCCCCCCCCeEEEEE-CCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCC--CCCC
Q 025100 139 DLSSIEPGSTVTVKW-RGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPN--AGDF 215 (258)
Q Consensus 139 dlsdL~pG~~~~v~w-~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~--~gd~ 215 (258)
++.+|++|+.+.|.+ .|+.|+|++. +++|+|+.+.|||.|+++..+ ..+.
T Consensus 13 ~l~eL~~G~~~~v~v~~g~~I~V~~~---------------------------~G~~~A~~n~CpH~g~pL~~g~g~~~g 65 (107)
T cd03473 13 EVANLKEGINFFRNKEDGKKYIIYKS---------------------------KSELKACKNQCKHQGGLFIKDIEDLDG 65 (107)
T ss_pred HHhcCCCCceEEEEecCCcEEEEEEE---------------------------CCEEEEEcCCCCCCCccccCCcceEeC
Confidence 457899999999999 9999999862 789999999999999998763 3456
Q ss_pred CEEEccCCCeEeCC-CCceecCCCCCCCcCceEEEeeCC
Q 025100 216 GGWFCPCHGSHYDI-SGRIRKGPAPYNLEVPSYSFLDEN 253 (258)
Q Consensus 216 gg~~CPCHGS~FDl-sGrv~~GPAp~nL~vppy~~~~d~ 253 (258)
+.+.||+|||+||+ +|+++..|+..+-+-.-.++.+++
T Consensus 66 ~~V~CP~Hg~~FDLrTG~~~~~p~~~~~~~~~~~~~~~~ 104 (107)
T cd03473 66 RTVRCTKHNWKLDVSTMKYVNPPDSFCQDELVVEYDEDG 104 (107)
T ss_pred CEEEeCCCCCEEEcCCCCCccCCcccccceeEEEEcccC
Confidence 78999999999999 999999888766663333433343
No 33
>cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO). DTDO is a novel aromatic-ring-hydroxylating dioxygenase found in Pseudomonas and other proteobacteria that degrades dehydroabietic acid (DhA). Specifically, DitA hydroxylates 7-oxodehydroabietic acid to 7-oxo-11,12-dihydroxy-8, 13-abietadien acid. The ditA1 and ditA2 genes encode the alpha and beta subunits of the oxygenase component of DTDO while the ditA3 gene encodes the ferredoxin component of DTDO. The organization of the genes encoding the various diterpenoid dioxygenase components, the phylogenetic distinctiveness of both the alpha subunit and the ferredoxin component, and the unusual iron-sulfur cluster of the ferredoxin all suggest that this enzyme belongs to a new class of aromatic ring-hydroxylating dioxygenases.
Probab=99.64 E-value=1.6e-15 Score=123.50 Aligned_cols=93 Identities=20% Similarity=0.277 Sum_probs=72.8
Q ss_pred eeCCCCCC-CCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCC-CC
Q 025100 138 VDLSSIEP-GSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAG-DF 215 (258)
Q Consensus 138 VdlsdL~p-G~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~g-d~ 215 (258)
+.+++|++ |..+++...|++|+|+|. .+++++|+.|+|||.|+++..+.. +.
T Consensus 5 ~~~~el~~~g~~~~~~~~~~~i~v~r~--------------------------~~g~v~A~~n~CpH~g~~L~~~~~~~~ 58 (123)
T cd03536 5 GHESEIPNKGDFMVRDMGSDSVIVARD--------------------------KDGEIHVSLNVCPHRGMRISTTDGGNT 58 (123)
T ss_pred EEHHHCCCCCCEEEEEECCceEEEEEC--------------------------CCCCEEEEeeeCCCCCCCcccccCCCc
Confidence 46678887 666666899999999863 378999999999999999976543 33
Q ss_pred CEEEccCCCeEeCCCCceecCCCC-------------CCCcCceEEEeeCCEEEE
Q 025100 216 GGWFCPCHGSHYDISGRIRKGPAP-------------YNLEVPSYSFLDENKMLI 257 (258)
Q Consensus 216 gg~~CPCHGS~FDlsGrv~~GPAp-------------~nL~vppy~~~~d~~I~I 257 (258)
..+.||+|||+||.+|.++..|.. .+|..++.++ .++.|+|
T Consensus 59 ~~i~Cp~Hgw~fd~~G~~~~~p~~~~~~~~~~~~~~~~~L~~~~v~~-~~g~Ifv 112 (123)
T cd03536 59 QIHVCIYHGWAFRPNGDFIGAPVEKECMHGKMRTKAELGLHKARVTL-YGGLIFA 112 (123)
T ss_pred CEEECCcCCCEECCCCcEEECCccccccccCCCCHHHCCCcceeEEE-ECCEEEE
Confidence 578999999999999999988764 4466555554 6788876
No 34
>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A.
Probab=99.63 E-value=1.3e-15 Score=121.56 Aligned_cols=92 Identities=17% Similarity=0.303 Sum_probs=79.1
Q ss_pred eeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccC-CCeeccCCCCC--
Q 025100 138 VDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTH-LGCIPLPNAGD-- 214 (258)
Q Consensus 138 VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTH-LGC~p~~~~gd-- 214 (258)
+.+++|++|+.+.+..+|+.|.|+|. .++++||+.+.||| .+-++..+..+
T Consensus 6 ~~~~~L~~~~~~~~~v~g~~Ialf~~--------------------------~~~~vyAi~n~Cph~~~~~Ls~G~i~~~ 59 (104)
T PF13806_consen 6 CPLDDLPPGEGRAVEVDGRQIALFRV--------------------------RDGEVYAIDNRCPHSQAGPLSDGLIGDG 59 (104)
T ss_dssp EETTTSCTTSEEEEEETTEEEEEEEE--------------------------STTEEEEEESBETTTTSSCGCGSEEEEC
T ss_pred ccHHHCCCCCcEEEEECCeEEEEEEe--------------------------CCCCEEEEeccCCccCCcccceeEEccC
Confidence 68999999999999999999999972 37899999999999 68777766422
Q ss_pred --CCEEEccCCCeEeCC-CCceecCCCCCCCcCceEEEeeCCEEEE
Q 025100 215 --FGGWFCPCHGSHYDI-SGRIRKGPAPYNLEVPSYSFLDENKMLI 257 (258)
Q Consensus 215 --~gg~~CPCHGS~FDl-sGrv~~GPAp~nL~vppy~~~~d~~I~I 257 (258)
...+.||+|+++||+ +|+++.+|. ..|+++|.++ +|+.|+|
T Consensus 60 ~g~~~V~CPlH~~~f~L~tG~~~~~~~-~~l~~ypvrv-~~g~V~V 103 (104)
T PF13806_consen 60 NGEPCVACPLHKWRFDLRTGECLEDPD-VSLRTYPVRV-EDGQVYV 103 (104)
T ss_dssp TTEEEEEETTTTEEEETTTTEESSECS-EBSBEEEEEE-CTTEEEE
T ss_pred CCCEEEECCCCCCeEECCCcCcCCCCC-CcEEeEEEEE-ECCEEEE
Confidence 247899999999999 999998766 7799999887 7999987
No 35
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=99.62 E-value=3.1e-15 Score=123.10 Aligned_cols=76 Identities=25% Similarity=0.400 Sum_probs=63.7
Q ss_pred eeCCCCCC-CCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCC-CCC
Q 025100 138 VDLSSIEP-GSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNA-GDF 215 (258)
Q Consensus 138 VdlsdL~p-G~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~-gd~ 215 (258)
..+++|++ |..+++.+.|++|+|+|. .+++++|+.++|||.||++..+. ++.
T Consensus 13 ~~~~el~~~g~~~~~~~~~~~i~l~r~--------------------------~~g~i~A~~n~C~Hrg~~L~~g~~g~~ 66 (128)
T cd03472 13 GHETHIPKAGDYLTTYMGEDPVIVVRQ--------------------------KDGSIRVFLNQCRHRGMRICRSDAGNA 66 (128)
T ss_pred EEHHHCCCCCCEEEEEECCceEEEEEC--------------------------CCCCEEEEhhhCcCCCCeeeccCCCCc
Confidence 46677875 666778899999998862 37899999999999999998654 344
Q ss_pred CEEEccCCCeEeCCCCceecCCCC
Q 025100 216 GGWFCPCHGSHYDISGRIRKGPAP 239 (258)
Q Consensus 216 gg~~CPCHGS~FDlsGrv~~GPAp 239 (258)
+.+.||||||+||++|++++.|+.
T Consensus 67 ~~i~CP~Hgw~fd~~G~~~~~P~~ 90 (128)
T cd03472 67 KAFTCTYHGWAYDTAGNLVNVPFE 90 (128)
T ss_pred CEEECCcCCeEECCCcCEEeccCc
Confidence 589999999999999999999874
No 36
>cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobe
Probab=99.59 E-value=9.1e-15 Score=123.37 Aligned_cols=76 Identities=22% Similarity=0.339 Sum_probs=65.4
Q ss_pred eeeCCCCC-CCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCC-CCC
Q 025100 137 EVDLSSIE-PGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPN-AGD 214 (258)
Q Consensus 137 ~VdlsdL~-pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~-~gd 214 (258)
.+..++|+ +|+.+++++.|++|+|+|. .+++++|+.|+|||.|+++..+ .++
T Consensus 29 v~~~~el~~~g~~~~~~i~g~~iiv~r~--------------------------~~g~v~A~~n~CpHrg~~L~~g~~g~ 82 (150)
T cd03545 29 VGLEAEIPNAGDFKSTFVGDTPVVVTRA--------------------------EDGSLHAWVNRCAHRGALVCRERRGN 82 (150)
T ss_pred EEEHHHCCCCCCEEEEEECCceEEEEEC--------------------------CCCCEEEEcccCcCCCCEecccccCC
Confidence 35778897 6999999999999999763 3789999999999999998865 345
Q ss_pred CCEEEccCCCeEeCCCCceecCCC
Q 025100 215 FGGWFCPCHGSHYDISGRIRKGPA 238 (258)
Q Consensus 215 ~gg~~CPCHGS~FDlsGrv~~GPA 238 (258)
.+.+.||+|||+||++|+++..|+
T Consensus 83 ~~~i~CP~Hgw~Fdl~G~~~~ip~ 106 (150)
T cd03545 83 DGSLTCVYHQWAYDLKGNLKGVPF 106 (150)
T ss_pred CCEEECCCCCCEECCCCCEEECcc
Confidence 578999999999999999999875
No 37
>cd03541 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. CMO is a novel RO found in certain plants which catalyzes the first step in betaine synthesis. CMO is not found in animals or bacteria. In these organisms, the first step in betaine synthesis is catalyzed by either the membrane-bound choline dehydrogenase (CDH) or the soluble choline oxidase (COX).
Probab=99.57 E-value=8.7e-15 Score=119.17 Aligned_cols=79 Identities=20% Similarity=0.334 Sum_probs=66.8
Q ss_pred eCCCCC-CCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCCCCE
Q 025100 139 DLSSIE-PGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGG 217 (258)
Q Consensus 139 dlsdL~-pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd~gg 217 (258)
..++|+ +|..+++++.|++|+|+|. .+++++|+.++|+|.|+++..+.++.+.
T Consensus 7 ~~~el~~~g~~~~~~~~g~~i~v~r~--------------------------~dg~v~A~~n~C~Hrg~~L~~g~~~~~~ 60 (118)
T cd03541 7 YSDQVKEKNQYFTGRLGNVEYVVCRD--------------------------GNGKLHAFHNVCTHRASILACGSGKKSC 60 (118)
T ss_pred EHHHCCCCCCeEEEEECCeEEEEEEC--------------------------CCCCEEEEeCCCCCCcCCccCCccccCE
Confidence 456676 4667799999999999863 3789999999999999999887777788
Q ss_pred EEccCCCeEeCCCCceecCCCCCCCc
Q 025100 218 WFCPCHGSHYDISGRIRKGPAPYNLE 243 (258)
Q Consensus 218 ~~CPCHGS~FDlsGrv~~GPAp~nL~ 243 (258)
|.||+|||+||++|+++..|....++
T Consensus 61 i~CP~Hgw~f~l~G~l~~~P~~~~~~ 86 (118)
T cd03541 61 FVCPYHGWVYGLDGSLTKATQATGIQ 86 (118)
T ss_pred EEeCCCCCEEcCCCeEEeCCCccccc
Confidence 99999999999999999988765443
No 38
>cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 1
Probab=99.57 E-value=2.4e-14 Score=116.57 Aligned_cols=76 Identities=24% Similarity=0.311 Sum_probs=63.4
Q ss_pred eeCCCCCC-CCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCC-C
Q 025100 138 VDLSSIEP-GSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGD-F 215 (258)
Q Consensus 138 VdlsdL~p-G~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd-~ 215 (258)
..+++|++ |..+.+++.|.+++|+|. .+++++|+.++|||.|+++..+..+ .
T Consensus 7 ~~~~el~~~g~~~~~~~~~~~iiv~r~--------------------------~~g~~~A~~n~CpHrg~~L~~g~~~~~ 60 (123)
T cd03535 7 GHESEIPNAGDYVVRYIGDDSFIVCRD--------------------------EDGEIRAMFNSCRHRGMQVCRAEMGNT 60 (123)
T ss_pred EEHHHCCCCCCEEEEEECCeEEEEEEC--------------------------CCCCEEEEcccCccCCCEeeccccCCC
Confidence 46788887 666677799999999863 3789999999999999999866433 3
Q ss_pred CEEEccCCCeEeCCCCceecCCCC
Q 025100 216 GGWFCPCHGSHYDISGRIRKGPAP 239 (258)
Q Consensus 216 gg~~CPCHGS~FDlsGrv~~GPAp 239 (258)
+.+.||+|||+||.+|+++..|+.
T Consensus 61 ~~i~Cp~Hgw~Fd~tG~~~~~p~~ 84 (123)
T cd03535 61 SHFRCPYHGWTYRNTGRLVGVPAQ 84 (123)
T ss_pred CEEECCcCCCEECCCcCEeeCCCc
Confidence 579999999999999999998864
No 39
>cd03537 Rieske_RO_Alpha_PrnD This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD). PrnD is a novel Rieske N-oxygenase that catalyzes the final step in the pyrrolnitrin biosynthetic pathway, the oxidation of the amino group in aminopyrrolnitrin to a nitro group, forming the antibiotic pyrrolnitrin. The biosynthesis of pyrrolnitrin is one of the best examples of enzyme-catalyzed arylamine oxidation. Although arylamine oxygenases are widely distributed within the microbial world and used in a variety of metabolic reactions, PrnD represents one of only two known examples of arylamine oxygenases or N-oxygenases involved in arylnitro group formation, the other being AurF involved in aureothin biosynthesis.
Probab=99.56 E-value=2e-14 Score=117.99 Aligned_cols=92 Identities=20% Similarity=0.280 Sum_probs=71.8
Q ss_pred eCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCCCCEE
Q 025100 139 DLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGW 218 (258)
Q Consensus 139 dlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd~gg~ 218 (258)
..++|+ ++.+.+++.|++++|+|. .+++++|+.++|+|.|+.+..+..+.+.+
T Consensus 9 ~~~~l~-~~~~~~~~~g~~ivl~r~--------------------------~~g~v~a~~n~CpHrg~~Ls~G~v~~~~l 61 (123)
T cd03537 9 RSDDLK-DKPTELTLFGRPCVAWRG--------------------------ATGRAVVMDRHCSHLGANLADGRVKDGCI 61 (123)
T ss_pred EHHHcC-CCcEEEEECCeEEEEEEc--------------------------cCCEEEEEcCCCCCCCCCccCCEEeCCEE
Confidence 455664 677889999999999862 37899999999999999999877667889
Q ss_pred EccCCCeEeCCCCceecCCC-----------CCCCcCceEEE-eeCCEEEE
Q 025100 219 FCPCHGSHYDISGRIRKGPA-----------PYNLEVPSYSF-LDENKMLI 257 (258)
Q Consensus 219 ~CPCHGS~FDlsGrv~~GPA-----------p~nL~vppy~~-~~d~~I~I 257 (258)
.||+|||+||.+|+++..|. |....+..|.+ ..++.|+|
T Consensus 62 ~CpyHGw~Fd~~G~~~~iP~~~~~~~~~~~~p~~~~~~~~pv~e~~G~Vwv 112 (123)
T cd03537 62 QCPFHHWRYDEQGQCVHIPGHSTAVRRLEPVPRGARQPTLVTAERYGYVWV 112 (123)
T ss_pred ECCCCCCEECCCCCEEECCCCcccccccccCCcccccccEeEEEECCEEEE
Confidence 99999999999999998764 21233344544 36777765
No 40
>cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol.
Probab=99.54 E-value=1.5e-14 Score=118.45 Aligned_cols=85 Identities=25% Similarity=0.387 Sum_probs=66.5
Q ss_pred eeCCCCCC-CCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCC-CCC
Q 025100 138 VDLSSIEP-GSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNA-GDF 215 (258)
Q Consensus 138 VdlsdL~p-G~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~-gd~ 215 (258)
+.+++|++ |+.+.++..|.+|+|+|. .+++++|+.++|||.|+.+..+. ++.
T Consensus 5 ~~~~elp~~g~~~~~~~~~~~i~l~r~--------------------------~~g~v~A~~n~C~Hrg~~L~~g~~~~~ 58 (123)
T cd03542 5 AHESQIPNNNDYFTTTIGRQPVVITRD--------------------------KDGELNAFINACSHRGAMLCRRKQGNK 58 (123)
T ss_pred EEHHHCCCCCCEEEEEECCcEEEEEEC--------------------------CCCCEEEEcccCcCCCCccccccccCC
Confidence 46778886 667888899999999862 37899999999999999998653 345
Q ss_pred CEEEccCCCeEeCCCCceecCCCCCCCcCceEEE
Q 025100 216 GGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSF 249 (258)
Q Consensus 216 gg~~CPCHGS~FDlsGrv~~GPAp~nL~vppy~~ 249 (258)
+.|.||+|||+||.+|+++.-|. ..++.++..|
T Consensus 59 ~~i~CP~Hg~~Fd~~G~~~~~p~-~~~~~y~~~~ 91 (123)
T cd03542 59 GTFTCPFHGWTFSNTGKLLKVKD-PKTAGYPEGF 91 (123)
T ss_pred CEEECcCCCCEecCCccEEECCc-ccccCcCccc
Confidence 68999999999999999996553 3344444333
No 41
>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine.
Probab=99.54 E-value=1.9e-14 Score=120.81 Aligned_cols=77 Identities=22% Similarity=0.380 Sum_probs=65.4
Q ss_pred eeCCCCC-CCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCC-CC-
Q 025100 138 VDLSSIE-PGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNA-GD- 214 (258)
Q Consensus 138 VdlsdL~-pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~-gd- 214 (258)
..+++|+ +|+.+++++.|++|+|+|. .+++++|+.++|||.|+.+..+. +.
T Consensus 27 ~~~~elp~~G~~~~~~i~g~~i~v~r~--------------------------~~g~v~A~~n~CpHrg~~L~~~~~g~~ 80 (146)
T cd03538 27 GHESQVPNPGDYITTRIGDQPVVMVRH--------------------------TDGSVHVLYNRCPHKGTKIVSDGCGNT 80 (146)
T ss_pred EEHHHCCCCCCEEEEEECCeeEEEEEC--------------------------CCCCEEEEeccCcCCCCEeeccccccc
Confidence 4678898 7999999999999999863 37899999999999999986543 32
Q ss_pred CCEEEccCCCeEeCCCCceecCCCCC
Q 025100 215 FGGWFCPCHGSHYDISGRIRKGPAPY 240 (258)
Q Consensus 215 ~gg~~CPCHGS~FDlsGrv~~GPAp~ 240 (258)
.+.+.||+|||+||++|+++..|+-+
T Consensus 81 ~~~i~CP~Hgw~Fd~~G~~~~~p~~~ 106 (146)
T cd03538 81 GKFFRCPYHAWSFKTDGSLLAIPLKK 106 (146)
T ss_pred CCEEECCCCCCEECCCCCEEECCchh
Confidence 45799999999999999999998644
No 42
>cd03539 Rieske_RO_Alpha_S5H This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H). S5H converts salicylate (2-hydroxybenzoate), a metabolic intermediate of phenanthrene, to gentisate (2,5-dihydroxybenzoate) as part of an alternate pathway for naphthalene catabolism. S5H is a multicomponent enzyme made up of NagGH (the oxygenase components), NagAa (the ferredoxin reductase component), and NagAb (the ferredoxin component). The oxygenase component is made up of alpha (NagG) and beta (NagH) subunits.
Probab=99.53 E-value=5.5e-14 Score=115.81 Aligned_cols=75 Identities=24% Similarity=0.373 Sum_probs=63.0
Q ss_pred eeCCCCC-CCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCC-CCC
Q 025100 138 VDLSSIE-PGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNA-GDF 215 (258)
Q Consensus 138 VdlsdL~-pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~-gd~ 215 (258)
...++|+ +|..+++.+.+++|+|+|. .+++++|+.|+|+|.|+.+..+. ++.
T Consensus 5 ~~~~~l~~~g~~~~~~~~~~~v~v~r~--------------------------~dg~v~A~~n~C~Hrg~~L~~g~~~~~ 58 (129)
T cd03539 5 GLEAEIPNPGDFKRTLIGERSVIMTRD--------------------------PDGGINVVENVCAHRGMRFCRERNGNA 58 (129)
T ss_pred EEHHHCCCCCCEEEEEECCcEEEEEEC--------------------------CCCCEEEEeccCcCCCCEeeeeccCcc
Confidence 3556787 5899999999999998763 37899999999999999988653 444
Q ss_pred CEEEccCCCeEeCCCCceecCCC
Q 025100 216 GGWFCPCHGSHYDISGRIRKGPA 238 (258)
Q Consensus 216 gg~~CPCHGS~FDlsGrv~~GPA 238 (258)
+.+.||+|||+||++|+++.-|.
T Consensus 59 ~~l~CPyHgw~fdl~G~l~~~p~ 81 (129)
T cd03539 59 KDFVCPYHQWNYSLKGDLQGVPF 81 (129)
T ss_pred CEEECCCCCCEECCCCCEeeccc
Confidence 68999999999999999998664
No 43
>PLN00095 chlorophyllide a oxygenase; Provisional
Probab=99.51 E-value=6.1e-14 Score=134.28 Aligned_cols=93 Identities=16% Similarity=0.219 Sum_probs=78.4
Q ss_pred eeCCCC-CCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCCCC
Q 025100 138 VDLSSI-EPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFG 216 (258)
Q Consensus 138 VdlsdL-~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd~g 216 (258)
..+++| ++|+.+.|+..|++++|+|. .+++|+|+.+.|+|.||++..+..+.+
T Consensus 77 a~ssdL~~~g~~~~f~L~GepIVL~Rd--------------------------~dGqv~Af~N~CPHRGapLSeG~v~~g 130 (394)
T PLN00095 77 AFAAGLRDEDALIAFDLFNVPWVLFRD--------------------------ADGEAGCIKDECAHRACPLSLGKLVDG 130 (394)
T ss_pred EEHHHCCCCCceEEEEECCEEEEEEEC--------------------------CCCCEEEEeccCCCCCCccccCcccCC
Confidence 578889 78999999999999999862 378999999999999999998877778
Q ss_pred EEEccCCCeEeCCCCceecCCCCCC------CcCceEEEeeCCEEEE
Q 025100 217 GWFCPCHGSHYDISGRIRKGPAPYN------LEVPSYSFLDENKMLI 257 (258)
Q Consensus 217 g~~CPCHGS~FDlsGrv~~GPAp~n------L~vppy~~~~d~~I~I 257 (258)
.+.||+|||+||.+|+|..-|.... +..+|.++ .++.|+|
T Consensus 131 ~L~CPYHGW~FD~~G~C~~iP~~~~~~~~~~v~tYPV~e-~dGlVwV 176 (394)
T PLN00095 131 KAQCPYHGWEYETGGECAKMPSCKKFLKGVFADAAPVIE-RDGFIFL 176 (394)
T ss_pred EEEecCCCcEECCCCCEeeCCCccccccccccceEEEEE-ECCEEEE
Confidence 9999999999999999999886432 34555554 7888876
No 44
>PLN02281 chlorophyllide a oxygenase
Probab=99.48 E-value=1.5e-13 Score=136.12 Aligned_cols=93 Identities=20% Similarity=0.289 Sum_probs=78.2
Q ss_pred eeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCCCCE
Q 025100 138 VDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGG 217 (258)
Q Consensus 138 VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd~gg 217 (258)
+..++|++|+.+.+++.|++|+|+|. .+|+++|+.++|+|.||++..+..+.+.
T Consensus 225 a~s~EL~~g~~~~v~llG~~IVL~R~--------------------------~dG~v~A~~D~CPHRgaPLs~G~v~g~~ 278 (536)
T PLN02281 225 AFTADLKHDTMVPIECFEQPWVIFRG--------------------------EDGKPGCVRNTCAHRACPLDLGTVNEGR 278 (536)
T ss_pred EEHHHCCCCCeEEEEECCEEEEEEEC--------------------------CCCeEEEEeCcCcCCCCccccceeeCCE
Confidence 56778988999999999999988762 4789999999999999999988777789
Q ss_pred EEccCCCeEeCCCCceecCCCC----CCCcCceEEEeeCCEEEE
Q 025100 218 WFCPCHGSHYDISGRIRKGPAP----YNLEVPSYSFLDENKMLI 257 (258)
Q Consensus 218 ~~CPCHGS~FDlsGrv~~GPAp----~nL~vppy~~~~d~~I~I 257 (258)
+.||+|||+||.+|+|+..|.. ..|..+|.+. .++.|+|
T Consensus 279 L~CPYHGW~FD~dG~cv~iP~~~~~~~~l~sYPV~e-~~GlVwV 321 (536)
T PLN02281 279 IQCPYHGWEYSTDGECKKMPSTKLLKVKIKSLPCLE-QEGMIWI 321 (536)
T ss_pred EEeCCCCCEECCCCCEeeCCCCccccCCcceEeEEE-ECCEEEE
Confidence 9999999999999999998864 2355555553 6888876
No 45
>PLN02518 pheophorbide a oxygenase
Probab=99.30 E-value=8e-12 Score=124.59 Aligned_cols=94 Identities=15% Similarity=0.244 Sum_probs=74.5
Q ss_pred eeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCC-CC
Q 025100 138 VDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGD-FG 216 (258)
Q Consensus 138 VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd-~g 216 (258)
..+++|++|+.+.++..|++++|+|. ..+|+|+|+.++|+|.|+++..+..+ .+
T Consensus 95 a~~~dL~~g~p~~~~llG~~lVl~Rd-------------------------~~~G~~~A~~d~CPHRgapLS~G~v~~~g 149 (539)
T PLN02518 95 SLVEDLDPSVPTPFQLLGRDLVLWKD-------------------------PNQGEWVAFDDKCPHRLAPLSEGRIDENG 149 (539)
T ss_pred EEHHHCCCCCeEEEEECCEEEEEEEE-------------------------CCCCeEEEEcccCcCcCCCcccceecCCC
Confidence 35567778999999999999999861 03789999999999999999987653 57
Q ss_pred EEEccCCCeEeCCCCceecCCCC--------------CCCcCceEEEeeCCEEEE
Q 025100 217 GWFCPCHGSHYDISGRIRKGPAP--------------YNLEVPSYSFLDENKMLI 257 (258)
Q Consensus 217 g~~CPCHGS~FDlsGrv~~GPAp--------------~nL~vppy~~~~d~~I~I 257 (258)
.+.||+|||+||.+|+|+.-|.. ..+..+|.++ .++.|+|
T Consensus 150 ~L~CpYHGW~Fd~~G~c~~IP~~~~~~~~~~~~~~~~a~v~sypv~e-~~GlIwV 203 (539)
T PLN02518 150 HLQCSYHGWSFDGCGSCTRIPQAAPEGPEARAVKSPRACAIKFPTMV-SQGLLFV 203 (539)
T ss_pred EEEcCCCCCEEcCCCCeeecccccccccccccccCcccccceEeEEE-ECCEEEE
Confidence 89999999999999999875421 1255555554 7888876
No 46
>TIGR03229 benzo_1_2_benA benzoate 1,2-dioxygenase, large subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family all act on benzoate, but may have additional activities on various benozate analogs. This model describes the large subunit. Between the trusted and noise cutoffs are similar enzymes, likely to act on benzoate but perhaps best identified according to some other activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).
Probab=99.21 E-value=3.1e-11 Score=117.56 Aligned_cols=76 Identities=28% Similarity=0.488 Sum_probs=64.5
Q ss_pred eeCCCCC-CCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCC-CCCC
Q 025100 138 VDLSSIE-PGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPN-AGDF 215 (258)
Q Consensus 138 VdlsdL~-pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~-~gd~ 215 (258)
+..++|+ +|..+++.+.|.||+|+|. .++++.|+.|+|+|.|+.+..+ .++.
T Consensus 43 ~~~selp~~gd~~t~~~~~~~vvv~R~--------------------------~dG~i~af~N~C~HRga~L~~~~~g~~ 96 (433)
T TIGR03229 43 AHESQIPNNNDYYTTYMGRQPIFIARN--------------------------KDGELNAFINACSHRGAMLCRHKRGNK 96 (433)
T ss_pred EEHHHCCCCCCeEEEEECCeEEEEEEC--------------------------CCCcEEEEeCcCCCCCCCcccccccCC
Confidence 4678886 5677889999999999862 4799999999999999998864 3556
Q ss_pred CEEEccCCCeEeCCCCceecCCCC
Q 025100 216 GGWFCPCHGSHYDISGRIRKGPAP 239 (258)
Q Consensus 216 gg~~CPCHGS~FDlsGrv~~GPAp 239 (258)
..|.||+|||+||.+|++++-|.+
T Consensus 97 ~~~~CPyHgW~f~~~G~l~~vP~~ 120 (433)
T TIGR03229 97 TTYTCPFHGWTFNNSGKLLKVKDP 120 (433)
T ss_pred CEEEcCCCCCEecCCcceEeCCCc
Confidence 789999999999999999988763
No 47
>COG4638 HcaE Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]
Probab=99.18 E-value=1.3e-10 Score=109.21 Aligned_cols=74 Identities=30% Similarity=0.499 Sum_probs=66.2
Q ss_pred eeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCCC-C
Q 025100 138 VDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDF-G 216 (258)
Q Consensus 138 VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd~-g 216 (258)
.-.++|++++.+++...|++++|+| ..+++|.|+.++|+|.|..+..+.... +
T Consensus 32 ~~~~el~~~~~~~~~i~g~~lvi~R--------------------------~~dg~~~al~d~C~HRga~Ls~g~~~~~~ 85 (367)
T COG4638 32 AHSSELPKPDPLTVRIGGEPLVVVR--------------------------DKDGQVHALADVCPHRGARLSEGRVGGKG 85 (367)
T ss_pred ccHHHCCCCCceeEEEcCeEEEEEE--------------------------CCCCCEEEEeccCCCCCchhccccCCCCc
Confidence 4668898999999999999999975 368999999999999999999886555 7
Q ss_pred EEEccCCCeEeCCCCceecCC
Q 025100 217 GWFCPCHGSHYDISGRIRKGP 237 (258)
Q Consensus 217 g~~CPCHGS~FDlsGrv~~GP 237 (258)
.+.||+|||.||.+|+++.-|
T Consensus 86 ~l~CpyHgW~y~~~G~~~~ip 106 (367)
T COG4638 86 RLTCPYHGWTYDLDGRLRGVP 106 (367)
T ss_pred eEecCCCceEECCCCcEecCC
Confidence 999999999999999999777
No 48
>TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=99.17 E-value=9.7e-11 Score=114.31 Aligned_cols=76 Identities=28% Similarity=0.446 Sum_probs=64.7
Q ss_pred eeCCCCC-CCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccC-CCCCC
Q 025100 138 VDLSSIE-PGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLP-NAGDF 215 (258)
Q Consensus 138 VdlsdL~-pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~-~~gd~ 215 (258)
...++|+ +|+.+++.+.+.||+|+|. .+|++.|+.|+|+|.|+.+.. +.++.
T Consensus 43 ~h~selp~~GDy~t~~ig~~pviv~R~--------------------------~dG~i~a~~N~C~HRGa~L~~~~~Gn~ 96 (438)
T TIGR03228 43 CHESELPNNHDFVTVRAGRQPMIVTRD--------------------------GKGELHALVNACQHRGATLTRVGKGNQ 96 (438)
T ss_pred EEHHHCCCCCCeEEEEECCeEEEEEEC--------------------------CCCCEEEEcccCCCCCCccccCCcccc
Confidence 4567775 5999999999999999862 589999999999999999885 45666
Q ss_pred CEEEccCCCeEeCCCCceecCCCC
Q 025100 216 GGWFCPCHGSHYDISGRIRKGPAP 239 (258)
Q Consensus 216 gg~~CPCHGS~FDlsGrv~~GPAp 239 (258)
..|.||+|||.||.+|++++-|.+
T Consensus 97 ~~~~CPYHgW~y~~dG~L~~vp~~ 120 (438)
T TIGR03228 97 STFTCPFHAWCYKSDGRLVKVKAP 120 (438)
T ss_pred CEEEcCCCCCcccCCCceeecCcc
Confidence 789999999999999999976643
No 49
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=98.50 E-value=1.5e-07 Score=63.99 Aligned_cols=36 Identities=33% Similarity=0.380 Sum_probs=26.1
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 025100 89 PGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSAS 127 (258)
Q Consensus 89 ~~~~~RR~Fl~~~~~g~~~v~a~~~~~~~~p~v~~~~ps 127 (258)
+.+.+||+||++++++.+++|++ .++||||.+|+|+
T Consensus 6 ~~~~~RRdFL~~at~~~gavG~~---~~a~Pfv~s~~Ps 41 (41)
T PF10399_consen 6 PVDPTRRDFLTIATSAVGAVGAA---AAAWPFVSSMNPS 41 (41)
T ss_dssp ----HHHHHHHHHHHHHHHHHHH---HHHHHHHHTTSS-
T ss_pred CCCchHHHHHHHHHHHHHHHHHH---HHHHHHHhccCCC
Confidence 44779999999988776666653 5889999999996
No 50
>PF02921 UCR_TM: Ubiquinol cytochrome reductase transmembrane region; InterPro: IPR004192 The ubiquinol cytochrome c reductase (cytochrome bc1) complex is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. The bc1 complex contains 11 subunits, 3 respiratory subunits (cytochrome B, cytochrome C1, Rieske protein), 2 core proteins and 6 low-molecular weight proteins. Each subunit of the cytochrome bc1 complex provides a single helix (this domain) to make up the transmembrane region of the complex.; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1NU1_E 1L0L_E 1BCC_E 1SQB_E 1SQQ_E 1SQP_E 1PPJ_E 2A06_R 1BE3_E 1BGY_E ....
Probab=98.38 E-value=2.7e-07 Score=68.23 Aligned_cols=59 Identities=36% Similarity=0.580 Sum_probs=45.5
Q ss_pred cccccCCCccccccCccccc----CCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Q 025100 67 VAAVKNPTSKIVYDEYNHER----YPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKD 129 (258)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~r----~~~~~~~RR~Fl~~~~~g~~~v~a~~~~~~~~p~v~~~~ps~~ 129 (258)
+.+++.|+ |++|+.+. ..+.+++||.|.|+++++++++++.+++..+..||.+|++++|
T Consensus 2 htdi~~Pd----F~~Yr~~~~~~~~~~~~~~rr~fsY~~~g~~~~~~a~~AK~~V~~fv~~mSaSAD 64 (64)
T PF02921_consen 2 HTDIKVPD----FSDYRRKSPSKRSRESDDSRRAFSYFMVGGGGVASAYAAKSTVQDFVSSMSASAD 64 (64)
T ss_dssp GGGTS--------TTTBSGGTTS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSHH
T ss_pred CCCCCCCC----chhhcccccccccCCCCcccceeeehhhhhHHHHHHHHHHHHHHHHHHhcCccCC
Confidence 45667775 88886553 2234778999999999888999999999999999999999986
No 51
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=94.76 E-value=0.045 Score=37.00 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=24.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 025100 91 DPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSAS 127 (258)
Q Consensus 91 ~~~RR~Fl~~~~~g~~~v~a~~~~~~~~p~v~~~~ps 127 (258)
|.+||+||..+++|++++.++ ..+.|++.++.|.
T Consensus 5 dm~RR~lmN~ll~Gava~~a~---~~lyP~~~ffvPP 38 (39)
T PF08802_consen 5 DMSRRQLMNLLLGGAVAVPAG---GMLYPYVKFFVPP 38 (39)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHS--
T ss_pred ChhHHHHHHHHHHhhHHHHHH---HHhhhheeEecCC
Confidence 678999999998876655543 5678888888775
No 52
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=89.35 E-value=0.53 Score=35.03 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=12.2
Q ss_pred CcchhHHHHHHHHHHH
Q 025100 91 DPSKRAFAYFVLTGGR 106 (258)
Q Consensus 91 ~~~RR~Fl~~~~~g~~ 106 (258)
+.+||+||+.+.++++
T Consensus 8 ~~sRR~Flk~lg~~aa 23 (66)
T TIGR02811 8 DPSRRDLLKGLGVGAA 23 (66)
T ss_pred CccHHHHHHHHHHHHH
Confidence 6689999998755444
No 53
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=84.53 E-value=1.2 Score=27.36 Aligned_cols=14 Identities=21% Similarity=0.067 Sum_probs=10.5
Q ss_pred cchhHHHHHHHHHH
Q 025100 92 PSKRAFAYFVLTGG 105 (258)
Q Consensus 92 ~~RR~Fl~~~~~g~ 105 (258)
.+||+||+...+++
T Consensus 2 ~sRR~fLk~~~a~~ 15 (26)
T PF10518_consen 2 LSRRQFLKGGAAAA 15 (26)
T ss_pred CcHHHHHHHHHHHH
Confidence 47999999875443
No 54
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=83.96 E-value=13 Score=29.88 Aligned_cols=84 Identities=20% Similarity=0.406 Sum_probs=56.5
Q ss_pred CCCCCCeEEEEE--CCE--EEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCCCCE
Q 025100 142 SIEPGSTVTVKW--RGK--PVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGG 217 (258)
Q Consensus 142 dL~pG~~~~v~w--~Gk--PV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd~gg 217 (258)
+|..|+...+.| +|+ +.|++++ .++.+.+..+.| .=|-......+.+.
T Consensus 1 ~v~Dgklh~y~y~~~G~~vrff~i~~--------------------------~dg~~~va~daC--eiC~~~GY~q~g~~ 52 (102)
T PF10080_consen 1 DVKDGKLHRYAYTDDGKEVRFFAIKK--------------------------PDGSYRVAFDAC--EICGPKGYYQEGDQ 52 (102)
T ss_pred CccCCcEEEEEEcCCCEEEEEEEEEC--------------------------CCCCEEEEEEec--cccCCCceEEECCE
Confidence 466888888877 355 5677764 368888888887 34533322345689
Q ss_pred EEccCCCeEeCC--CCceecCCCCCCCcCceEEEeeCCEEEE
Q 025100 218 WFCPCHGSHYDI--SGRIRKGPAPYNLEVPSYSFLDENKMLI 257 (258)
Q Consensus 218 ~~CPCHGS~FDl--sGrv~~GPAp~nL~vppy~~~~d~~I~I 257 (258)
+.|---|-+|.+ -|....|=-|-|| +|++ ++++|+|
T Consensus 53 lvC~~C~~~~~~~~ig~~~GGCNP~P~---~~~~-~~~~I~I 90 (102)
T PF10080_consen 53 LVCKNCGVRFNLPTIGGKSGGCNPIPL---PYTV-DGGNIII 90 (102)
T ss_pred EEEecCCCEEehhhcccccCCCCccCC---ceEe-cCCeEEE
Confidence 999999999999 4644444222333 6886 7888887
No 55
>TIGR01409 TAT_signal_seq Tat (twin-arginine translocation) pathway signal sequence. Members with small amino acid side chains at the -1 and -3 positions from the C-terminus of the model should be predicted to be cleaved as are Sec pathway signal sequences. Members are almost exclusively bacterial, although archaeal sequences are also found. A large fraction of the members of this family may have bound redox-active cofactors.
Probab=82.56 E-value=1.2 Score=27.68 Aligned_cols=18 Identities=22% Similarity=0.100 Sum_probs=12.7
Q ss_pred cchhHHHHHHHHHHHHHH
Q 025100 92 PSKRAFAYFVLTGGRFVY 109 (258)
Q Consensus 92 ~~RR~Fl~~~~~g~~~v~ 109 (258)
.+||+||+.+..++++++
T Consensus 1 ~sRR~Flk~~~~~~a~~~ 18 (29)
T TIGR01409 1 LSRRDFLKGAAAAGAAAG 18 (29)
T ss_pred CchhhhHHHHHHHHHHHh
Confidence 379999999865544443
No 56
>COG4393 Predicted membrane protein [Function unknown]
Probab=79.06 E-value=32 Score=33.59 Aligned_cols=90 Identities=22% Similarity=0.431 Sum_probs=56.5
Q ss_pred ceeeeeCCCCCCCCeEEEEE---CCEEE--EEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccc---cCCC
Q 025100 134 ASLEVDLSSIEPGSTVTVKW---RGKPV--FIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVC---THLG 205 (258)
Q Consensus 134 a~v~VdlsdL~pG~~~~v~w---~GkPV--~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vC---THLG 205 (258)
..+.+++++++.|....+.| +||-| |+++|-+ ++..+.|+-+-| --+|
T Consensus 289 n~v~ipie~vrDgkLHRF~yIA~dGkaVRFflInk~p------------------------dr~s~~avfDAC~iCGd~G 344 (405)
T COG4393 289 NMVVIPIEQVRDGKLHRFVYIADDGKAVRFFLINKRP------------------------DRLSLGAVFDACDICGDQG 344 (405)
T ss_pred CEEEEEHHHcccCceEEEEEEccCCcEEEEEEEecCC------------------------CCCCceeeehHHHhccccc
Confidence 57789999999999999988 68765 7777522 134455555544 3333
Q ss_pred eeccCCCCCCCEEEcc-CCCeEeCC-CCceecCCCCCCCcCceEEEeeCCEEEE
Q 025100 206 CIPLPNAGDFGGWFCP-CHGSHYDI-SGRIRKGPAPYNLEVPSYSFLDENKMLI 257 (258)
Q Consensus 206 C~p~~~~gd~gg~~CP-CHGS~FDl-sGrv~~GPAp~nL~vppy~~~~d~~I~I 257 (258)
.+ .+++.+.|- |-=-.|=. -|. -.|=-|-||| |++ +|++|+|
T Consensus 345 Yv-----~e~dqvICv~C~VrmfipSIGk-~GGCNPvPle---ye~-ddnki~I 388 (405)
T COG4393 345 YV-----MEGDQVICVRCDVRMFIPSIGK-KGGCNPVPLE---YEI-DDNKIII 388 (405)
T ss_pred eE-----eECCEEEEEEccEEEEcccCCC-CCCCCCCcee---EEe-cCcEEEE
Confidence 33 234678875 33334544 454 2333345565 776 8899987
No 57
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=56.51 E-value=7.2 Score=37.80 Aligned_cols=35 Identities=43% Similarity=0.614 Sum_probs=27.6
Q ss_pred CCCeeccCCCCCC--CEEEccCCCeEeCCCCceecCC
Q 025100 203 HLGCIPLPNAGDF--GGWFCPCHGSHYDISGRIRKGP 237 (258)
Q Consensus 203 HLGC~p~~~~gd~--gg~~CPCHGS~FDlsGrv~~GP 237 (258)
-+|-.|+.+-++. -.+|=|||||-.|..|+-+..|
T Consensus 251 slGl~PSAnig~~~~~~lfEPvHGSAPDIAGkgiANP 287 (348)
T COG0473 251 SLGLAPSANLGDERGPALFEPVHGSAPDIAGKGIANP 287 (348)
T ss_pred ccccCccCccCCCCCCceeecCCCCcccccCCCccCh
Confidence 3666666655554 6899999999999999987776
No 58
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=46.44 E-value=8.9 Score=36.21 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=16.3
Q ss_pred CCCCCEEEccCCCeEeCCCCce
Q 025100 212 AGDFGGWFCPCHGSHYDISGRI 233 (258)
Q Consensus 212 ~gd~gg~~CPCHGS~FDlsGrv 233 (258)
.++.-.|+|-|||+++..+.=|
T Consensus 247 ~~~~v~i~c~chg~~~~~~efv 268 (284)
T PF07897_consen 247 KGEEVRIVCVCHGSFLSPAEFV 268 (284)
T ss_pred CCCeEEEEEEecCCCCCHHHHH
Confidence 3445679999999999874433
No 59
>PRK09898 hypothetical protein; Provisional
Probab=37.24 E-value=21 Score=31.49 Aligned_cols=13 Identities=15% Similarity=0.156 Sum_probs=10.3
Q ss_pred cchhHHHHHHHHH
Q 025100 92 PSKRAFAYFVLTG 104 (258)
Q Consensus 92 ~~RR~Fl~~~~~g 104 (258)
.+||.||+.+..+
T Consensus 13 ~~RR~flk~~~~~ 25 (208)
T PRK09898 13 LTRLEFLRISGKG 25 (208)
T ss_pred hhHHHHHHhhcch
Confidence 6899999987433
No 60
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=35.05 E-value=55 Score=30.05 Aligned_cols=17 Identities=18% Similarity=0.169 Sum_probs=12.2
Q ss_pred CCcchhHHHHHHHHHHH
Q 025100 90 GDPSKRAFAYFVLTGGR 106 (258)
Q Consensus 90 ~~~~RR~Fl~~~~~g~~ 106 (258)
...+||.||..++.+++
T Consensus 7 ~~~~rr~f~~~~~~~~~ 23 (254)
T PRK09476 7 PQNGRRRFLRDVVRTAG 23 (254)
T ss_pred CCccHHHHHHHHHHHHH
Confidence 46789999988754433
No 61
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=32.51 E-value=21 Score=29.51 Aligned_cols=18 Identities=28% Similarity=0.617 Sum_probs=14.1
Q ss_pred CEEEcc-CCCeEeCC-CCce
Q 025100 216 GGWFCP-CHGSHYDI-SGRI 233 (258)
Q Consensus 216 gg~~CP-CHGS~FDl-sGrv 233 (258)
..+.|| ||+-.+++ +|+=
T Consensus 85 ~~~~CP~C~s~~~~i~~G~e 104 (115)
T COG0375 85 LDYRCPKCGSINLRIIGGDE 104 (115)
T ss_pred heeECCCCCCCceEEecCCe
Confidence 456699 99999998 7763
No 62
>PF09263 PEX-2N: Peroxisome biogenesis factor 1, N-terminal ; InterPro: IPR015343 This domain adopts a Cdc48 domain 2-like fold, with a beta-alpha-beta(3) arrangement. It has been suggested that this domain may be involved in interactions with ubiquitin, ubiquitin-like protein modifiers, or ubiquitin-like domains, such as Ubx. Furthermore, the domain may possess a putative adaptor or substrate binding site, allowing for peroxisomal biogenesis, membrane fusion and protein translocation []. ; PDB: 1WLF_A.
Probab=31.56 E-value=25 Score=27.70 Aligned_cols=58 Identities=24% Similarity=0.417 Sum_probs=27.4
Q ss_pred CCCCCeEEEEECCE-EEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCCCCEEEcc
Q 025100 143 IEPGSTVTVKWRGK-PVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCP 221 (258)
Q Consensus 143 L~pG~~~~v~w~Gk-PV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd~gg~~CP 221 (258)
+.++|.+.+.|... |||+-.- . -|. +...++ -...+|.|+|=-+.-..|+ ..|.=|
T Consensus 28 L~q~qAvEvsWg~~~pvfLSW~-----------e---~r~------~~~~~e--n~~EinrqlgeKLGl~dGe-QvfLrp 84 (87)
T PF09263_consen 28 LQQNQAVEVSWGHQSPVFLSWV-----------E---GRS------FSDQGE--NVAEINRQLGEKLGLSDGE-QVFLRP 84 (87)
T ss_dssp --TT--EEEESSS---EEE-EE-----------E----SS---------------EEEEEHHHHHHTT--TT--EEEEEE
T ss_pred HhhCceEEEEeCCCCcEEEEee-----------c---ccc------cCCccc--cHHHHHHHHHHhhCCCcCC-eEeeee
Confidence 67999999999988 9988541 1 010 011112 3456777888776555454 577777
Q ss_pred CC
Q 025100 222 CH 223 (258)
Q Consensus 222 CH 223 (258)
|+
T Consensus 85 Cs 86 (87)
T PF09263_consen 85 CS 86 (87)
T ss_dssp -S
T ss_pred CC
Confidence 75
No 63
>PRK06451 isocitrate dehydrogenase; Validated
Probab=31.31 E-value=26 Score=34.74 Aligned_cols=34 Identities=32% Similarity=0.553 Sum_probs=26.0
Q ss_pred CCeeccCCCCCCCEEEccCCCeEeCCCCceecCC
Q 025100 204 LGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGP 237 (258)
Q Consensus 204 LGC~p~~~~gd~gg~~CPCHGS~FDlsGrv~~GP 237 (258)
+|..|+.+-++...+|=|+|||..|..|+-+..|
T Consensus 313 lGl~pSanig~~~alFEpvHGSAPdiAGk~iANP 346 (412)
T PRK06451 313 IGMLGGANIGDTGGMFEAIHGTAPKYAGKNVANP 346 (412)
T ss_pred hhhcceeeeCCCCceeECCCCCccccCCCCCcCc
Confidence 4555554445556899999999999999987776
No 64
>PRK13747 putative mercury resistance protein; Provisional
Probab=31.07 E-value=15 Score=28.34 Aligned_cols=9 Identities=44% Similarity=0.981 Sum_probs=7.2
Q ss_pred CEEEccCCC
Q 025100 216 GGWFCPCHG 224 (258)
Q Consensus 216 gg~~CPCHG 224 (258)
..+.||||=
T Consensus 24 AvLTCPCHL 32 (78)
T PRK13747 24 AVLTCPCHL 32 (78)
T ss_pred HHhcCcchH
Confidence 468899994
No 65
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=29.29 E-value=32 Score=33.16 Aligned_cols=35 Identities=37% Similarity=0.495 Sum_probs=26.6
Q ss_pred CCCeeccCCCCCCCEEEccCCCeEeCCCCceecCC
Q 025100 203 HLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGP 237 (258)
Q Consensus 203 HLGC~p~~~~gd~gg~~CPCHGS~FDlsGrv~~GP 237 (258)
=+|..|+.+-++...+|=|+|||--|++|+-+..|
T Consensus 242 glGl~psanig~~~a~FEp~HGSAPdIAGk~iANP 276 (334)
T PRK08997 242 GLGMAPGANIGRDAAIFEAVHGSAPDIAGKNLANP 276 (334)
T ss_pred CCCcCcceeECCCceEEECCCCchhhhCCCCccCc
Confidence 45555555544446889999999999999888776
No 66
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=29.26 E-value=25 Score=33.63 Aligned_cols=35 Identities=43% Similarity=0.629 Sum_probs=25.9
Q ss_pred CCCeeccCCCCCCCEEEccCCCeEeCCCCceecCC
Q 025100 203 HLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGP 237 (258)
Q Consensus 203 HLGC~p~~~~gd~gg~~CPCHGS~FDlsGrv~~GP 237 (258)
=+|..|+.+-++...+|=|.||+.||+.|+-+..|
T Consensus 234 glGl~pSanig~~~a~fep~hGsa~diaG~~~aNp 268 (322)
T TIGR02088 234 SLGLAPSANIGDRKALFEPVHGSAPDIAGKGIANP 268 (322)
T ss_pred CCCCCceeEEcCCceEEecCCCChhHhCCCCCCCh
Confidence 35555554445556899999999999999877665
No 67
>PF05052 MerE: MerE protein; InterPro: IPR007746 The prokaryotic MerE (or URF-1) protein is part of the mercury resistance operon often located on plasmids or transposons [, ]. It has been suggested that MerE is a broad mercury transporter mediating transport across the bacterial membrane [].
Probab=28.88 E-value=17 Score=27.90 Aligned_cols=11 Identities=36% Similarity=0.715 Sum_probs=7.8
Q ss_pred CEEEccCCCeE
Q 025100 216 GGWFCPCHGSH 226 (258)
Q Consensus 216 gg~~CPCHGS~ 226 (258)
..+.||||=-.
T Consensus 24 A~lTCPCHLpi 34 (75)
T PF05052_consen 24 ALLTCPCHLPI 34 (75)
T ss_pred HHhhCcchHHH
Confidence 45789999543
No 68
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=28.80 E-value=62 Score=29.52 Aligned_cols=12 Identities=42% Similarity=0.387 Sum_probs=9.5
Q ss_pred CcchhHHHHHHH
Q 025100 91 DPSKRAFAYFVL 102 (258)
Q Consensus 91 ~~~RR~Fl~~~~ 102 (258)
+.+||.||+.+.
T Consensus 2 ~~~RR~flk~~~ 13 (244)
T PRK14993 2 DSSKRQFLQQLG 13 (244)
T ss_pred CccHHHHHHHHH
Confidence 458999999764
No 69
>PLN02329 3-isopropylmalate dehydrogenase
Probab=27.70 E-value=33 Score=34.07 Aligned_cols=35 Identities=37% Similarity=0.697 Sum_probs=26.6
Q ss_pred CCCeeccCCCCCC-CEEEccCCCeEeCCCCceecCC
Q 025100 203 HLGCIPLPNAGDF-GGWFCPCHGSHYDISGRIRKGP 237 (258)
Q Consensus 203 HLGC~p~~~~gd~-gg~~CPCHGS~FDlsGrv~~GP 237 (258)
=+|..|+.+-++. ..+|=|.|||--|+.|+-+..|
T Consensus 304 glGlaPSanig~~~~a~FEpvHGSAPdIAGk~iANP 339 (409)
T PLN02329 304 SIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANP 339 (409)
T ss_pred CcccCceeecCCCCceeeeccCCCchhhcCCcccCh
Confidence 3555555555543 3799999999999999988777
No 70
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=26.74 E-value=48 Score=31.81 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=9.7
Q ss_pred chhHHHHHHHHHH
Q 025100 93 SKRAFAYFVLTGG 105 (258)
Q Consensus 93 ~RR~Fl~~~~~g~ 105 (258)
+||.||+.+.+++
T Consensus 2 ~RR~fl~~~~~~~ 14 (328)
T PRK10882 2 NRRNFLKAASAGA 14 (328)
T ss_pred CHHHHHHHHHHHH
Confidence 6999999864443
No 71
>PRK07362 isocitrate dehydrogenase; Validated
Probab=25.23 E-value=42 Score=33.99 Aligned_cols=35 Identities=34% Similarity=0.457 Sum_probs=26.6
Q ss_pred CCeeccCCCCCCCEEEccCCCeEeCCCCceecCCC
Q 025100 204 LGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPA 238 (258)
Q Consensus 204 LGC~p~~~~gd~gg~~CPCHGS~FDlsGrv~~GPA 238 (258)
+|..|+.+-++...+|=|+|||--|..|+-+..|.
T Consensus 377 lGlaPSANiG~~~a~FEpvHGSAPdIAGk~iANP~ 411 (474)
T PRK07362 377 LGMAPGANIGDNAAIFEATHGTAPKHAGLDRINPG 411 (474)
T ss_pred ccccceeeeCCCceeeecCCCCchhhcCCCCcCcH
Confidence 45555544455568999999999999999887773
No 72
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=23.67 E-value=2.1e+02 Score=20.93 Aligned_cols=13 Identities=15% Similarity=0.427 Sum_probs=10.1
Q ss_pred CcchhHHHHHHHH
Q 025100 91 DPSKRAFAYFVLT 103 (258)
Q Consensus 91 ~~~RR~Fl~~~~~ 103 (258)
.++|+.|...+-+
T Consensus 26 KPd~~Ef~~ia~~ 38 (61)
T PRK09400 26 KPTREEFLLVAKV 38 (61)
T ss_pred CCCHHHHHHHHHH
Confidence 5689999998743
No 73
>PRK14990 anaerobic dimethyl sulfoxide reductase subunit A; Provisional
Probab=21.51 E-value=81 Score=33.22 Aligned_cols=13 Identities=15% Similarity=0.181 Sum_probs=10.5
Q ss_pred CcchhHHHHHHHH
Q 025100 91 DPSKRAFAYFVLT 103 (258)
Q Consensus 91 ~~~RR~Fl~~~~~ 103 (258)
+.+||.||+.+.+
T Consensus 13 ~~sRR~FLk~~~~ 25 (814)
T PRK14990 13 EVSRRGLVKTTAI 25 (814)
T ss_pred CccHHHHHHHHHH
Confidence 6789999997643
No 74
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=21.35 E-value=45 Score=32.31 Aligned_cols=34 Identities=44% Similarity=0.658 Sum_probs=25.4
Q ss_pred CCeeccCCCC-CCCEEEccCCCeEeCCCCceecCC
Q 025100 204 LGCIPLPNAG-DFGGWFCPCHGSHYDISGRIRKGP 237 (258)
Q Consensus 204 LGC~p~~~~g-d~gg~~CPCHGS~FDlsGrv~~GP 237 (258)
+|..|+.+-+ +...+|=|.|||-.|.+|+-+..|
T Consensus 257 lGlapSanig~~~~a~FEp~HGSAPdiAGk~iANP 291 (349)
T TIGR00169 257 LGMLPSASLGSDGFGLFEPVHGSAPDIAGKGIANP 291 (349)
T ss_pred CCCCceEEECCCCCEEEECCCCChhHhcCCCCCCh
Confidence 4555544444 445899999999999999987776
No 75
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=21.29 E-value=57 Score=31.39 Aligned_cols=35 Identities=46% Similarity=0.647 Sum_probs=26.3
Q ss_pred CCCeeccCCCCCCCEEEccCCCeEeCCCCceecCC
Q 025100 203 HLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGP 237 (258)
Q Consensus 203 HLGC~p~~~~gd~gg~~CPCHGS~FDlsGrv~~GP 237 (258)
=+|..|+.+-++...+|=|.|||--|+.|+-+..|
T Consensus 239 glGl~psanig~~~a~FEp~HGSAPdiAGk~iANP 273 (330)
T PRK14025 239 GLGLAPSANIGDKYGLFEPVHGSAPDIAGKGIANP 273 (330)
T ss_pred CCCcccceeeCCCcceeEcCCCCchhhCCCCCcCc
Confidence 34555555445556889999999999999877776
No 76
>PRK08572 rps17p 30S ribosomal protein S17P; Reviewed
Probab=21.25 E-value=36 Score=27.85 Aligned_cols=17 Identities=35% Similarity=0.909 Sum_probs=11.4
Q ss_pred EccCCCeEeCCCCceecC
Q 025100 219 FCPCHGSHYDISGRIRKG 236 (258)
Q Consensus 219 ~CPCHGS~FDlsGrv~~G 236 (258)
.||+||.. -+.|+.+.|
T Consensus 18 ~cP~~g~l-~irgk~l~G 34 (108)
T PRK08572 18 NCPFHGTL-PVRGQVLEG 34 (108)
T ss_pred CCCCccee-eeeeEEEEE
Confidence 39999933 226777666
No 77
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=20.83 E-value=2.8e+02 Score=25.26 Aligned_cols=17 Identities=35% Similarity=0.286 Sum_probs=12.3
Q ss_pred CCCeEEEEECCEEEEEE
Q 025100 145 PGSTVTVKWRGKPVFIR 161 (258)
Q Consensus 145 pG~~~~v~w~GkPV~I~ 161 (258)
+...+++.++|+++-+-
T Consensus 48 ~~~~i~~~VNG~~~~~~ 64 (217)
T PRK11433 48 EISPVTLKVNGKTEQLE 64 (217)
T ss_pred cCceEEEEECCEEEEEe
Confidence 34557889999987653
Done!