Query 025100
Match_columns 258
No_of_seqs 256 out of 1835
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 03:45:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025100.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025100hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cx5_E Cytochrome B-C1 complex 100.0 3.3E-50 1.1E-54 348.0 21.1 179 77-258 7-185 (185)
2 1pp9_E Ubiquinol-cytochrome C 100.0 2E-49 6.9E-54 346.3 20.1 188 67-258 2-196 (196)
3 2qjy_C Ubiquinol-cytochrome C 100.0 4.3E-45 1.5E-49 316.2 19.2 166 90-258 7-187 (187)
4 2nwf_A Ubiquinol-cytochrome C 100.0 1.1E-39 3.9E-44 271.3 14.2 125 134-258 2-141 (141)
5 1rie_A Rieske iron-sulfur prot 100.0 1.2E-35 4.1E-40 242.4 13.6 128 131-258 2-129 (129)
6 1vf5_D Rieske iron-sulfur prot 100.0 4E-31 1.4E-35 226.4 0.7 137 91-258 12-163 (179)
7 1nyk_A Rieske iron-sulfur prot 99.9 2.1E-27 7.1E-32 202.0 1.7 120 134-257 21-144 (165)
8 4aay_B AROB; oxidoreductase, r 99.9 9.4E-25 3.2E-29 187.4 9.2 144 91-257 9-160 (175)
9 3gce_A Ferredoxin component of 99.9 2E-22 6.8E-27 161.9 12.2 94 137-258 14-110 (121)
10 3dqy_A Toluene 1,2-dioxygenase 99.9 2.8E-22 9.5E-27 156.5 8.6 93 138-258 6-99 (106)
11 2qpz_A Naphthalene 1,2-dioxyge 99.9 9.2E-22 3.2E-26 152.7 11.3 92 138-257 8-100 (103)
12 1fqt_A Rieske-type ferredoxin 99.9 1.8E-21 6.1E-26 153.6 11.6 93 138-258 10-104 (112)
13 1g8k_B Arsenite oxidase; molyb 99.8 2E-21 6.7E-26 159.0 9.4 102 138-257 12-118 (133)
14 2i7f_A Ferredoxin component of 99.8 1.4E-21 4.9E-26 153.0 7.7 92 138-257 8-101 (108)
15 2de6_D Ferredoxin component of 99.8 5.1E-21 1.7E-25 152.2 10.0 92 138-257 9-102 (115)
16 1vm9_A Toluene-4-monooxygenase 99.8 9.2E-21 3.2E-25 149.0 9.2 93 138-258 6-100 (111)
17 1jm1_A Rieske iron-sulfur prot 99.8 2E-22 6.8E-27 176.7 -2.1 119 135-257 13-164 (204)
18 1rfs_A Rieske protein; iron-su 99.8 5.9E-20 2E-24 151.7 7.6 90 140-257 29-121 (139)
19 2jo6_A Nitrite reductase [NAD( 99.8 5E-19 1.7E-23 139.5 10.5 92 138-257 11-109 (113)
20 3c0d_A Putative nitrite reduct 99.8 2.1E-19 7.3E-24 143.6 8.3 92 138-257 10-107 (119)
21 2jza_A Nitrite reductase [NAD( 99.8 2.8E-18 9.5E-23 139.4 9.4 92 138-257 8-106 (130)
22 4aiv_A Probable nitrite reduct 99.7 1.7E-18 6E-23 139.3 7.6 94 138-258 14-114 (119)
23 3azc_A Cytochrome B6-F complex 99.5 8.6E-19 2.9E-23 144.4 0.0 91 139-257 22-116 (133)
24 3d89_A Rieske domain-containin 99.7 2.6E-17 8.8E-22 137.3 4.8 92 138-257 21-131 (157)
25 3gke_A DDMC; rieske cluster, n 99.6 1.5E-15 5.1E-20 141.2 10.0 92 138-257 13-111 (349)
26 2zyl_A Possible oxidoreductase 99.6 2.3E-15 8E-20 141.7 10.0 93 138-257 30-128 (386)
27 3gcf_A Terminal oxygenase comp 99.6 9.4E-15 3.2E-19 139.2 10.9 93 137-257 38-141 (394)
28 3gkq_A Terminal oxygenase comp 99.6 1.1E-14 3.8E-19 138.5 10.7 93 137-257 35-138 (389)
29 3vca_A Ring-hydroxylating diox 99.5 1.3E-14 4.4E-19 138.4 9.7 93 138-257 48-150 (412)
30 1z01_A 2-OXO-1,2-dihydroquinol 99.5 3.2E-14 1.1E-18 136.1 10.8 92 138-257 48-150 (446)
31 2de6_A Terminal oxygenase comp 99.5 3.6E-14 1.2E-18 133.3 10.8 92 138-257 33-135 (392)
32 3n0q_A Putative aromatic-ring 99.5 3E-14 1E-18 135.8 10.3 93 138-257 46-148 (409)
33 2gbw_A Biphenyl 2,3-dioxygenas 99.5 4.3E-14 1.5E-18 135.3 11.0 94 138-257 42-148 (454)
34 2bmo_A Oxygenase-alpha NBDO; n 99.5 5.3E-14 1.8E-18 134.3 10.0 93 138-257 41-148 (447)
35 2b1x_A Naphthalene dioxygenase 99.5 1E-13 3.4E-18 133.4 10.4 94 138-257 50-157 (470)
36 1uli_A Biphenyl dioxygenase la 99.5 8.3E-14 2.9E-18 133.7 8.7 93 138-257 60-165 (460)
37 3gzx_A Biphenyl dioxygenase su 99.4 2.2E-12 7.5E-17 124.7 10.8 75 138-238 62-138 (457)
38 1q90_R Cytochrome B6-F complex 94.7 0.033 1.1E-06 38.3 3.9 35 91-128 8-42 (49)
39 2pq4_B Periplasmic nitrate red 81.2 1.2 4.2E-05 28.3 2.9 13 92-104 3-15 (35)
40 3ty4_A Probable homoisocitrate 25.1 25 0.00087 32.9 1.5 35 203-237 272-306 (366)
41 3mp7_B Preprotein translocase 24.8 1E+02 0.0035 21.5 4.3 35 91-125 24-58 (61)
42 1x0l_A Homoisocitrate dehydrog 24.2 22 0.00077 32.8 1.0 34 204-237 240-273 (333)
43 1wpw_A 3-isopropylmalate dehyd 22.7 25 0.00085 32.5 0.9 34 204-237 237-270 (336)
44 3sbq_A Nitrous-oxide reductase 21.0 29 0.00099 34.9 1.1 15 91-105 17-31 (638)
No 1
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=100.00 E-value=3.3e-50 Score=347.97 Aligned_cols=179 Identities=54% Similarity=1.048 Sum_probs=165.2
Q ss_pred ccccCcccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhcceeeeeCCCCCCCCeEEEEECCE
Q 025100 77 IVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGK 156 (258)
Q Consensus 77 ~~~~~~~~~r~~~~~~~RR~Fl~~~~~g~~~v~a~~~~~~~~p~v~~~~ps~~~~A~a~v~VdlsdL~pG~~~~v~w~Gk 156 (258)
|+|++|+. .+..+.+||+||+++++++++++++++..+++||+.+|+|+++++|.+.++|++++|++|+.++|+|+|+
T Consensus 7 ~~~~~~~~--~~~~~~~RR~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~v~V~~s~l~~G~~~~v~~~g~ 84 (185)
T 3cx5_E 7 PNFDDVLK--ENNDADKGRSYAYFMVGAMGLLSSAGAKSTVETFISSMTATADVLAMAKVEVNLAAIPLGKNVVVKWQGK 84 (185)
T ss_dssp CCCTTTBC--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCGGGCCCCCEEEEGGGCCTTCEEEEEETTE
T ss_pred CCchhhcc--CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCcchhccCcEEEEHHHCCCCCeEEEEECCe
Confidence 46988853 3456789999999998777766666667889999999999999999999999999999999999999999
Q ss_pred EEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCCCCEEEccCCCeEeCCCCceecC
Q 025100 157 PVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKG 236 (258)
Q Consensus 157 PV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd~gg~~CPCHGS~FDlsGrv~~G 236 (258)
||||+|++++||+.+.++++++||||+++.+|..+++|+|++++|||+||+|.+..++.++|+||||||+||++|++++|
T Consensus 85 pv~v~r~~~~~i~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~iCtHlGc~p~~~~~~~~~~~CPcHGs~FD~~G~v~~g 164 (185)
T 3cx5_E 85 PVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPIGEAGDFGGWFCPCHGSHYDISGRIRKG 164 (185)
T ss_dssp EEEEEECCHHHHHHHHCSCGGGCSSCCCSTTTCSSTTEEEEECCCTTTSCCCEEEETTTTEEEETTTTEEECTTCCEEES
T ss_pred EEEEEECCHHHhhhhhhcchhhhcCcccccccccCCeEEEEecccCCCCceeccCCCCCCEEEcCCCCCEECCCCCEecC
Confidence 99999999999999999999999999999999999999999999999999887766677899999999999999999999
Q ss_pred CCCCCCcCceEEEeeCCEEEEC
Q 025100 237 PAPYNLEVPSYSFLDENKMLIG 258 (258)
Q Consensus 237 PAp~nL~vppy~~~~d~~I~IG 258 (258)
|++.||++|+|++ +|++|+||
T Consensus 165 Pa~~~L~v~p~~v-~~~~I~vg 185 (185)
T 3cx5_E 165 PAPLNLEIPAYEF-DGDKVIVG 185 (185)
T ss_dssp SCCSCCCCCCEEE-ETTEEEEC
T ss_pred CCCCCcceEEEEE-ECCEEEEC
Confidence 9999999999998 99999998
No 2
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=100.00 E-value=2e-49 Score=346.29 Aligned_cols=188 Identities=49% Similarity=0.986 Sum_probs=170.7
Q ss_pred cccccCCCccccccCcccccCCC-------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhcceeeee
Q 025100 67 VAAVKNPTSKIVYDEYNHERYPP-------GDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVD 139 (258)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~r~~~-------~~~~RR~Fl~~~~~g~~~v~a~~~~~~~~p~v~~~~ps~~~~A~a~v~Vd 139 (258)
+++++.| +|++|+.+.... .+.+||+|||++++++++++++++..+++||+.+|+|+++++|.++++++
T Consensus 2 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~RR~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~v~v~ 77 (196)
T 1pp9_E 2 HTDIKVP----DFSDYRRPEVLDSTKSSKESSEARKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSASADVLAMSKIEIK 77 (196)
T ss_dssp GGGCCCC----CCTTTBCGGGCCTTSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHCCCCEEEE
T ss_pred CCCcCCC----CchHhhcccccCcccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccccccccEEE
Confidence 4566666 488887543221 25679999999887777777777778999999999999999999999999
Q ss_pred CCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCCCCEEE
Q 025100 140 LSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWF 219 (258)
Q Consensus 140 lsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd~gg~~ 219 (258)
+++|++|+.++|+|+|+||||+|++++||+.++++++++|+||+++..|..+++|+|++++|||+||+|.++.++++.|+
T Consensus 78 ls~l~~G~~~~v~~~G~pV~V~r~t~~~i~~~~~~~~~~l~dp~~~~~r~~~ge~~a~~~~CtH~G~~l~~~~~~~~~~~ 157 (196)
T 1pp9_E 78 LSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDFGGYY 157 (196)
T ss_dssp GGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHHSCTTTCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETCSTTSSEE
T ss_pred HHHCCCCCeEEEEECCEEEEEEECCHHHHhhhhccccccccCcccccccccCCeEEEEECccCCCCeeccccCCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877778999
Q ss_pred ccCCCeEeCCCCceecCCCCCCCcCceEEEeeCCEEEEC
Q 025100 220 CPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 258 (258)
Q Consensus 220 CPCHGS~FDlsGrv~~GPAp~nL~vppy~~~~d~~I~IG 258 (258)
||||||+||++|++++||++.||++|||++++|++|+||
T Consensus 158 CP~HGs~FD~~G~v~~gPa~~~L~~~p~~v~~d~~I~vg 196 (196)
T 1pp9_E 158 CPCHGSHYDASGRIRKGPAPLNLEVPSYEFTSDDMVIVG 196 (196)
T ss_dssp ETTTTEEECTTCCEEESSCCSCCCCCCEEEETTTEEEEC
T ss_pred eCCCCCEECCCCCCccCCCCCCCcceeEEEEECCEEEEC
Confidence 999999999999999999999999999998789999998
No 3
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=100.00 E-value=4.3e-45 Score=316.23 Aligned_cols=166 Identities=53% Similarity=0.966 Sum_probs=150.0
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhcceeeeeCCCCCCCCeEEEEECCEEEEEEeCCHHHHH
Q 025100 90 GDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIK 169 (258)
Q Consensus 90 ~~~~RR~Fl~~~~~g~~~v~a~~~~~~~~p~v~~~~ps~~~~A~a~v~VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~ 169 (258)
.+.+||+||++++++++++++ ..+++||+.+|+|++++++.+.++|++++|++|+.++|+|+|+||||+|||++||+
T Consensus 7 ~~~~RR~Fl~~~~~~~~~~~a---~~~~~p~v~~~~p~~~~~a~~~v~v~ls~l~~G~~~~v~~~g~pv~i~rrt~~~i~ 83 (187)
T 2qjy_C 7 HAGTRRDFLYYATAGAGAVAT---GAAVWPLINQMNPSADVQALASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIE 83 (187)
T ss_dssp --CHHHHHHHHHHHHHHHHHH---HHHHHHHHHTTSCCTTTSCCCCEEEECTTCCTTEEEEEEETTEEEEEEECCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCCchhhcccccEEEEHHHCCCCCeEEEEECCEEEEEEECCHHHhh
Confidence 467899999998766555543 35789999999999999988899999999999999999999999999999999999
Q ss_pred hhccCCCCCCCCcc------------ccccccc--CCcEEEEEccccCCCeeccC-CCCCCCEEEccCCCeEeCCCCcee
Q 025100 170 LANSVDLGSLRDPQ------------QDAERVK--NPEWLVVVGVCTHLGCIPLP-NAGDFGGWFCPCHGSHYDISGRIR 234 (258)
Q Consensus 170 ~~~~~~~~~lrDP~------------~~~~R~~--~ge~~a~~~vCTHLGC~p~~-~~gd~gg~~CPCHGS~FDlsGrv~ 234 (258)
.++++++++|+||+ ++..|.. +++|+|+.++|||+||+|.+ ..++.+.|+||||||+||++|+++
T Consensus 84 ~~~~~~~~~l~dp~~~~~~~p~~~~~~~~~r~~~~~g~~~a~~~~C~H~G~~l~~~~~g~~~~~~CP~Hg~~Fd~~G~~~ 163 (187)
T 2qjy_C 84 LGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTHLGCSPIGGVSGDFGGWFCPCHGSHYDSAGRIR 163 (187)
T ss_dssp HHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTCCEEEEECCCTTTSCCCEEEEETTTTEEEETTTTEEECTTSCEE
T ss_pred hhhccchhhccCcccccccccccccccccccccCCCCeEEEEeCccCCCCeECccCcCCCcCEEEeCCCCCEECCCCeEe
Confidence 99999999999998 6777766 89999999999999999987 455568999999999999999999
Q ss_pred cCCCCCCCcCceEEEeeCCEEEEC
Q 025100 235 KGPAPYNLEVPSYSFLDENKMLIG 258 (258)
Q Consensus 235 ~GPAp~nL~vppy~~~~d~~I~IG 258 (258)
.||++.+|++|+|+|.+|++|+||
T Consensus 164 ~gPa~~~L~~~~~~v~~d~~i~ig 187 (187)
T 2qjy_C 164 KGPAPENLPIPLAKFIDETTIQLG 187 (187)
T ss_dssp ESSCCSCCCBCSEEEEETTEEEEC
T ss_pred CCCCCCCCceEEEEEEeCCEEEEC
Confidence 999999999999999778999998
No 4
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=100.00 E-value=1.1e-39 Score=271.29 Aligned_cols=125 Identities=62% Similarity=1.156 Sum_probs=117.9
Q ss_pred ceeeeeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcc------------ccccccc--CCcEEEEEc
Q 025100 134 ASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQ------------QDAERVK--NPEWLVVVG 199 (258)
Q Consensus 134 a~v~VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~------------~~~~R~~--~ge~~a~~~ 199 (258)
++++||+++|++|++++|+|+||||||+|||++||+.+++++++.|+||+ ++..|+. +++|+|+++
T Consensus 2 ~~~~vd~s~l~~g~~~~v~wrgkPv~i~~rt~~~~~~~~~~~~~~l~Dp~~~~~~~p~~~y~~~~~R~~~~~g~~~a~~~ 81 (141)
T 2nwf_A 2 ASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWG 81 (141)
T ss_dssp CCEEEECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTSCEEEEEC
T ss_pred CCEEEecccCCCCCEEEEEECCEEEEEEECCHHHHhhhhcccccccCCcccccccCCccccccchhccccCCCcEEEEeC
Confidence 58999999999999999999999999999999999999999999999999 6678877 899999999
Q ss_pred cccCCCeeccC-CCCCCCEEEccCCCeEeCCCCceecCCCCCCCcCceEEEeeCCEEEEC
Q 025100 200 VCTHLGCIPLP-NAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 258 (258)
Q Consensus 200 vCTHLGC~p~~-~~gd~gg~~CPCHGS~FDlsGrv~~GPAp~nL~vppy~~~~d~~I~IG 258 (258)
+|||+||+|.+ +.++.+.|+||||||+||++|+++.||++.+|++|++++.+|++|+||
T Consensus 82 ~C~H~G~~l~~~~~~~~~~~~CP~Hgs~Fd~~G~~~~gPa~~~L~~~pv~v~~d~~i~vg 141 (141)
T 2nwf_A 82 VCTHLGCVPIGGVSGDFGGWFCPCHGSHWDSAGRIRKGPAPENLPIPLAKFIDETTIQLG 141 (141)
T ss_dssp CCTTTCCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCCSCCCBCSEEESSSSEEEEC
T ss_pred cCCCCCeEccccCccCCCEEEcCCCCCEECCCCCCccCCCCCCCCceeEEEEECCEEEEC
Confidence 99999999998 566668999999999999999999999999999999998678999998
No 5
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Probab=100.00 E-value=1.2e-35 Score=242.45 Aligned_cols=128 Identities=60% Similarity=1.257 Sum_probs=121.0
Q ss_pred hhcceeeeeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccC
Q 025100 131 LAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLP 210 (258)
Q Consensus 131 ~A~a~v~VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~ 210 (258)
+|+++++|++++|++|+.++|.|+|+||+|+|++++||+.+.++++..|+||+++.+|..+++|+|+.++|||+||+|.+
T Consensus 2 ~a~~~~~v~~s~l~~G~~~~v~~~g~pv~v~r~~~~~~~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~~C~H~g~~l~~ 81 (129)
T 1rie_A 2 LAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIA 81 (129)
T ss_dssp -CCSSEEEEGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEE
T ss_pred cccCceEeeHHHCCCCCEEEEEECCeEEEEEECCHHHHhhhhccccceecCcccccccccCCeEEEEECccCCCCeeccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCEEEccCCCeEeCCCCceecCCCCCCCcCceEEEeeCCEEEEC
Q 025100 211 NAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLIG 258 (258)
Q Consensus 211 ~~gd~gg~~CPCHGS~FDlsGrv~~GPAp~nL~vppy~~~~d~~I~IG 258 (258)
+.++.+.|+||||||+||++|+++.||++.+|++|++++.+|++|+||
T Consensus 82 g~~~~~~i~CP~Hg~~fd~~G~~~~~P~~~~l~~~~v~v~~~~~v~vg 129 (129)
T 1rie_A 82 NAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPSYEFTSDDMVIVG 129 (129)
T ss_dssp TCTTTEEEEETTTTEEEETTCCEEESSCCSCCCCCCEEESSSSEEEEC
T ss_pred ccCCCCEEEcCCCCCEEcCCCCEeeCCCCCCCCceeEEEEeCCEEEEC
Confidence 877778899999999999999999999999999999997578999997
No 6
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Probab=99.96 E-value=4e-31 Score=226.43 Aligned_cols=137 Identities=28% Similarity=0.485 Sum_probs=111.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhc-ceeeee-----------CCCCCCCCeEEEE-ECCEE
Q 025100 91 DPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAM-ASLEVD-----------LSSIEPGSTVTVK-WRGKP 157 (258)
Q Consensus 91 ~~~RR~Fl~~~~~g~~~v~a~~~~~~~~p~v~~~~ps~~~~A~-a~v~Vd-----------lsdL~pG~~~~v~-w~GkP 157 (258)
+.+||+||+.++++++++++ ..+++|++.+|.|++...+. ..+.+| +++|++|+.+.+. +.|++
T Consensus 12 ~~~RR~Fl~~~~~~~~~~~~---~~~~~p~~~~~~p~~~~~~~~~~v~~d~~g~~i~~~~~~~~l~~g~~~~~~~~~g~~ 88 (179)
T 1vf5_D 12 DMGRRQFMNLLAFGTVTGVA---LGALYPLVKYFIPPSGGAVGGGTTAKDKLGNNVKVSKFLESHNAGDRVLVQGLKGDP 88 (179)
T ss_dssp CCCCCTTSCTTHHHHHHHHH---HHHHHHHHHHHSCCCCSSCCCCCCCCBTTSSCCCHHHHHHCCCTTCCCEESCSSSSC
T ss_pred CCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHhCCchhhcccCCcEEEccCCCeEehhhcccccCCCceEEEeccCCCe
Confidence 56899999988766555443 25689999999999876644 234444 5678999988886 78888
Q ss_pred EEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcE--EEEEccccCCCeeccCCCCCCCEEEccCCCeEeCCCCceec
Q 025100 158 VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEW--LVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRK 235 (258)
Q Consensus 158 V~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~--~a~~~vCTHLGC~p~~~~gd~gg~~CPCHGS~FDlsGrv~~ 235 (258)
++++++ .++++ +|++++|||+||++.++.. .+.|+||||||+||.+|+++.
T Consensus 89 ~~lv~~--------------------------~~g~~~~~a~~~~CtH~G~~l~~~~~-~~~~~CP~Hgs~Fd~~G~~~~ 141 (179)
T 1vf5_D 89 TYIVVE--------------------------SKEAIRDYGINAVCTHLGCVVPWNAA-ENKFKCPCHGSQYDETGRVIR 141 (179)
T ss_dssp EECCBC--------------------------TTCCBCSCCCBCBCTTTSCBCCBCSS-SSSEECTTTCCEECSSSCCCS
T ss_pred EEEEEE--------------------------CCCcEEEEEEeCccCCCCCCCcccCC-CCEEECCCCCCEECCCCcEec
Confidence 887653 24565 8999999999999998764 478999999999999999999
Q ss_pred CCCCCCCcCceEEEeeCCEEEEC
Q 025100 236 GPAPYNLEVPSYSFLDENKMLIG 258 (258)
Q Consensus 236 GPAp~nL~vppy~~~~d~~I~IG 258 (258)
||++.+|+++++++ +|+.|+|+
T Consensus 142 gPa~~~L~~~~v~v-~~g~v~v~ 163 (179)
T 1vf5_D 142 GPAPLSLALCHATV-QDDNIVLT 163 (179)
T ss_dssp SSCCSCCBCCCCCC-SSSSCCCC
T ss_pred CCCCCCCCeEEEEE-ECCEEEEE
Confidence 99999999999996 78888774
No 7
>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A
Probab=99.93 E-value=2.1e-27 Score=202.03 Aligned_cols=120 Identities=23% Similarity=0.503 Sum_probs=97.2
Q ss_pred ceeeeeCCCCCCCCeEEEEECCEEE--EEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCC
Q 025100 134 ASLEVDLSSIEPGSTVTVKWRGKPV--FIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPN 211 (258)
Q Consensus 134 a~v~VdlsdL~pG~~~~v~w~GkPV--~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~ 211 (258)
+.++|++++|++|++++|.|+|+|+ |+.+++.+++..+..++.+++ +|+.. .|..++ |+|++++|||+||.+..+
T Consensus 21 ~~~~v~~sdl~~G~~~~~~~~g~p~~~~~r~~~~~~~~~~~~~~p~~~-~~~~~-~~~~~g-v~A~~~~CpH~G~~L~~g 97 (165)
T 1nyk_A 21 EPKPIRLEELKPGDPFVLAYPMDPKTKVVKSGEAKNTLLVARFDPEEL-APEVA-QHAAEG-VVAYSAVCTHLGCIVSQW 97 (165)
T ss_dssp SCCBCBGGGCCTTSCCEEEEEECTTTCCBCTTSGGGCEEEEECCGGGS-CHHHH-TTCBTT-EEEEECBCTTTCCBCCEE
T ss_pred CCcEecHHHCCCCCEEEEEeCCCcchhhccCcchhcchheeccChhhc-Ccccc-ccccCC-EEEEEeecCCCCeEcccc
Confidence 6888999999999999999999997 444444443333445566667 67653 366555 999999999999999765
Q ss_pred CCCCCEEEccCCCeEeCC-CCc-eecCCCCCCCcCceEEEeeCCEEEE
Q 025100 212 AGDFGGWFCPCHGSHYDI-SGR-IRKGPAPYNLEVPSYSFLDENKMLI 257 (258)
Q Consensus 212 ~gd~gg~~CPCHGS~FDl-sGr-v~~GPAp~nL~vppy~~~~d~~I~I 257 (258)
..+.+.|+||||||+||+ +|. ++.||++.+|+++++++ +++.|+|
T Consensus 98 ~~~~~~i~CP~Hgs~Fd~~tG~~~~~gPa~~~L~~~~v~v-~~g~V~v 144 (165)
T 1nyk_A 98 VADEEAALCPCHGGVYDLRHGAQVIAGPPPRPVPQLPVRV-EDGVLVA 144 (165)
T ss_dssp EGGGTEEECTTTCCEEEGGGTTEEEESSCSSCCCEECEEE-ETTEEEE
T ss_pred cCCCCEEECCCCCCEEcCCCCCeeecCCCCCCCcEEEEEE-ECCEEEE
Confidence 556689999999999999 685 99999999999999997 7888887
No 8
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=99.91 E-value=9.4e-25 Score=187.45 Aligned_cols=144 Identities=15% Similarity=0.136 Sum_probs=88.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---hhhhhcc-eeeeeCCCCCCCCeEEEEECC--EEEEEEeCC
Q 025100 91 DPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSAS---KDVLAMA-SLEVDLSSIEPGSTVTVKWRG--KPVFIRRRT 164 (258)
Q Consensus 91 ~~~RR~Fl~~~~~g~~~v~a~~~~~~~~p~v~~~~ps---~~~~A~a-~v~VdlsdL~pG~~~~v~w~G--kPV~I~rRt 164 (258)
..+||+||+.+.++++++++ +.+|+-..+.+. ..++... ....++++|++|+.+.|.|.| .|++|+|.+
T Consensus 9 ~~~rr~fl~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~~~~~~p~~~v~~~~dL~~g~~~~v~~~~~~~pv~v~R~g 83 (175)
T 4aay_B 9 DIGRRQFLRGGALAAAGATA-----AVFGVGAPQARAATAAAGVEYPANRLANISELTLNEPLDVAYPDEDAAGVLLKLG 83 (175)
T ss_dssp ----------------------------------------CCSCCCCCEEEEEGGGCBBTBCEEEESSSTTSEEEEEECS
T ss_pred cccHHHHhhhhHHhhhheeE-----eccccccccccccccCcccCCCcceEEEHHHCCCCCEEEEEECCCCCEEEEEEcc
Confidence 67899999944333222221 223333332222 1112221 234699999999999999974 699999853
Q ss_pred HHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCCCCEEEccCCCeEeCCC--CceecCCCCCCC
Q 025100 165 EEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDIS--GRIRKGPAPYNL 242 (258)
Q Consensus 165 ~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd~gg~~CPCHGS~FDls--Grv~~GPAp~nL 242 (258)
++ .. .+|..+++|+|+.++|||+||++.++ .+.+.|.||||||+||+. |+++.||+..+|
T Consensus 84 ~~---------~~--------~~r~~~G~v~A~~n~CpH~G~~L~~g-~~~~~i~CP~Hg~~Fd~~~tG~~~~gPa~~~L 145 (175)
T 4aay_B 84 TR---------VE--------GGVGPDGDIVGFSTICPHKGFPLSYS-ADNKTFNCPGHFSVFDPEKGGQQVWGQATQNL 145 (175)
T ss_dssp SC---------CT--------TCBTTTTCEEEEECBCTTTCCBCEEE-TTTTEEECTTTCCEEEGGGTTEEEECSCSSCC
T ss_pred cc---------cc--------cccCCCCEEEEEeCCCCCCCCCCccC-CCCCEEEcCCCCCEECCCCCceEecCCCCCCc
Confidence 21 11 23446899999999999999999987 456899999999999994 999999999999
Q ss_pred cCceEEEeeCCEEEE
Q 025100 243 EVPSYSFLDENKMLI 257 (258)
Q Consensus 243 ~vppy~~~~d~~I~I 257 (258)
+.+++++.+|+.|++
T Consensus 146 ~~y~v~vd~dG~V~a 160 (175)
T 4aay_B 146 PQYVLRVADNGDIFA 160 (175)
T ss_dssp CBEEEEECTTSEEEE
T ss_pred CEEEEEEEcCCEEEE
Confidence 999998745777763
No 9
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans}
Probab=99.88 E-value=2e-22 Score=161.85 Aligned_cols=94 Identities=17% Similarity=0.314 Sum_probs=85.5
Q ss_pred eeeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCC--CCC
Q 025100 137 EVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPN--AGD 214 (258)
Q Consensus 137 ~VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~--~gd 214 (258)
.+.+++|++|+.+.+.+.|++|+|+| .+++++|+.++|||+||++.++ ..+
T Consensus 14 v~~~~el~~g~~~~~~~~g~~v~v~r---------------------------~~g~~~A~~n~CpH~g~~L~~G~~~~~ 66 (121)
T 3gce_A 14 VATLDQLKPGVPTAFDVDGDEVMVVR---------------------------DGDSVYAISNLCSHAEAYLDMGVFHAE 66 (121)
T ss_dssp EEEGGGSCTTCCEEEEETTEEEEEEE---------------------------ETTEEEEEESBCSSSSCBGGGSEEETT
T ss_pred EEEHHHCCCCCEEEEEECCEEEEEEE---------------------------ECCEEEEEeCcCCCCCCCCCCCceeec
Confidence 35889999999999999999999986 2789999999999999999987 556
Q ss_pred CCEEEccCCCeEeCC-CCceecCCCCCCCcCceEEEeeCCEEEEC
Q 025100 215 FGGWFCPCHGSHYDI-SGRIRKGPAPYNLEVPSYSFLDENKMLIG 258 (258)
Q Consensus 215 ~gg~~CPCHGS~FDl-sGrv~~GPAp~nL~vppy~~~~d~~I~IG 258 (258)
.+.|.||||||+||+ +|+++.||+..+|+.+++++ +++.|+|.
T Consensus 67 ~~~i~CP~Hg~~Fdl~tG~~~~~P~~~~L~~~~v~v-~~g~V~v~ 110 (121)
T 3gce_A 67 SLEIECPLHVGRFDVRTGAPTALPCVLPVRAYDVVV-DGTEILVA 110 (121)
T ss_dssp TTEEECTTTCCEEETTTCCEEETTCCSCCCBCCEEE-ETTEEEEC
T ss_pred CCEEEcCCCCCEEcCCCccEeCCCCcCCcceEEEEE-ECCEEEEE
Confidence 789999999999998 99999999999999999997 88999873
No 10
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*
Probab=99.87 E-value=2.8e-22 Score=156.55 Aligned_cols=93 Identities=17% Similarity=0.250 Sum_probs=84.0
Q ss_pred eeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCCCCE
Q 025100 138 VDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGG 217 (258)
Q Consensus 138 VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd~gg 217 (258)
..+++|++|+.+.+.+.|++|+|+| .+++++|+.++|||+||++.++..+.+.
T Consensus 6 ~~~~~l~~g~~~~~~~~g~~i~v~r---------------------------~~g~~~A~~~~CpH~g~~L~~g~~~~~~ 58 (106)
T 3dqy_A 6 LRQGDLPPGEMQRYEGGPEPVMVCN---------------------------VDGEFFAVQDTCTHGDWALSDGYLDGDI 58 (106)
T ss_dssp EEGGGSCTTCEEEECCSSSCEEEEE---------------------------ETTEEEEEESBCSSSSCBGGGSEEETTE
T ss_pred EEHHHCCCCCEEEEEECCEEEEEEE---------------------------ECCEEEEEeCcCCCCCCCCcCcEEeCCE
Confidence 4788999999999999999999986 2789999999999999999886555689
Q ss_pred EEccCCCeEeCC-CCceecCCCCCCCcCceEEEeeCCEEEEC
Q 025100 218 WFCPCHGSHYDI-SGRIRKGPAPYNLEVPSYSFLDENKMLIG 258 (258)
Q Consensus 218 ~~CPCHGS~FDl-sGrv~~GPAp~nL~vppy~~~~d~~I~IG 258 (258)
+.||||||+||+ +|+++.+|++.+|+.+++++ +++.|+|.
T Consensus 59 i~Cp~Hg~~Fdl~~G~~~~~P~~~~L~~~~v~~-~~g~v~v~ 99 (106)
T 3dqy_A 59 VECTLHFGKFCVRTGKVKALPACKPIKVFPIKV-EGDEVHVD 99 (106)
T ss_dssp EECTTTCCEEETTTCCEEETTCCSCCCEECEEE-ETTEEEEC
T ss_pred EECCCCCCEEeCCCCCEeCCCCCCCccEEEEEE-ECCEEEEE
Confidence 999999999997 99999999999999998886 78999873
No 11
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}
Probab=99.87 E-value=9.2e-22 Score=152.65 Aligned_cols=92 Identities=22% Similarity=0.314 Sum_probs=83.3
Q ss_pred eeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCCCCE
Q 025100 138 VDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGG 217 (258)
Q Consensus 138 VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd~gg 217 (258)
..+++|++|+.+.+.+.|++|+|+| .+++++|+.++|||+||++.++..+.+.
T Consensus 8 ~~~~~l~~g~~~~~~~~g~~i~v~r---------------------------~~g~~~A~~~~CpH~g~~L~~g~~~~~~ 60 (103)
T 2qpz_A 8 VALSDILEGDVLGVTVEGKELALYE---------------------------VEGEIYATDNLCTHGSARMSDGYLEGRE 60 (103)
T ss_dssp EETTSCCTTCEEEEEETTEEEEEEE---------------------------ETTEEEEEESBCSSSSCBGGGSEEETTE
T ss_pred EEHHHcCCCCEEEEEECCEEEEEEE---------------------------ECCEEEEECCcCCCCCCCCCCCeEeCCE
Confidence 5889999999999999999999986 3789999999999999999877545688
Q ss_pred EEccCCCeEeCC-CCceecCCCCCCCcCceEEEeeCCEEEE
Q 025100 218 WFCPCHGSHYDI-SGRIRKGPAPYNLEVPSYSFLDENKMLI 257 (258)
Q Consensus 218 ~~CPCHGS~FDl-sGrv~~GPAp~nL~vppy~~~~d~~I~I 257 (258)
+.||||||+||+ +|+++.+|+..+|+.++.++ +++.|+|
T Consensus 61 i~Cp~Hg~~Fd~~~G~~~~~P~~~~L~~~~v~~-~~g~v~v 100 (103)
T 2qpz_A 61 IECPLHQGRFDVCTGKALCAPVTQNIKTYPVKI-ENLRVMI 100 (103)
T ss_dssp EECTTTTCEEETTTCCEEETTCCSCCCEECEEE-ETTEEEE
T ss_pred EECCCCCCEEeCCCCCEeCCCCCCCCCEEeEEE-ECCEEEE
Confidence 999999999999 99999999999999888886 8888887
No 12
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*
Probab=99.86 E-value=1.8e-21 Score=153.57 Aligned_cols=93 Identities=18% Similarity=0.262 Sum_probs=83.5
Q ss_pred eeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCC-CCCCC
Q 025100 138 VDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPN-AGDFG 216 (258)
Q Consensus 138 VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~-~gd~g 216 (258)
..+++|++|+.+.+.+.|++|+|+|. +++++|+.++|||+||.+..+ ..+.+
T Consensus 10 ~~~~~l~~g~~~~~~~~g~~i~v~r~---------------------------~g~~~A~~n~CpH~g~~L~~g~~~~~~ 62 (112)
T 1fqt_A 10 CDRRDVPEGEALKVESGGTSVAIFNV---------------------------DGELFATQDRCTHGDWSLSDGGYLEGD 62 (112)
T ss_dssp EEGGGSCTTCEEEEEETTEEEEEEEE---------------------------TTEEEEEESBCTTSSCBSSTTCCEETT
T ss_pred EeHHHCCCCCeEEEEECCEEEEEEEE---------------------------CCEEEEEECCCCCCCcCCCCCCEEcCC
Confidence 58899999999999999999999862 689999999999999998866 44567
Q ss_pred EEEccCCCeEeCC-CCceecCCCCCCCcCceEEEeeCCEEEEC
Q 025100 217 GWFCPCHGSHYDI-SGRIRKGPAPYNLEVPSYSFLDENKMLIG 258 (258)
Q Consensus 217 g~~CPCHGS~FDl-sGrv~~GPAp~nL~vppy~~~~d~~I~IG 258 (258)
.|.||||||+||+ +|+++.+|+..+|+.++.++ +++.|+|.
T Consensus 63 ~i~CP~Hg~~Fd~~tG~~~~~P~~~~L~~~~v~~-~~g~v~v~ 104 (112)
T 1fqt_A 63 VVECSLHMGKFCVRTGKVKSPPPCEALKIFPIRI-EDNDVLVD 104 (112)
T ss_dssp EEECTTTCCEEETTTCCEEESSCCSCCCBCCEEE-ETTEEEEC
T ss_pred EEECCCCCCEEeCCCCcEeCCCCCCCccEEEEEE-ECCEEEEE
Confidence 8999999999999 99999999999999999986 78999873
No 13
>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B*
Probab=99.85 E-value=2e-21 Score=159.03 Aligned_cols=102 Identities=16% Similarity=0.296 Sum_probs=84.0
Q ss_pred eeCCCCCCCCeEEEEEC--CEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCCC
Q 025100 138 VDLSSIEPGSTVTVKWR--GKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDF 215 (258)
Q Consensus 138 VdlsdL~pG~~~~v~w~--GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd~ 215 (258)
..+++|++|+.+.|.|. |++++|+|.++++.. .+..+++++|+.++|||+||++.+. .+.
T Consensus 12 ~~~~dl~~g~~~~~~~~~~g~~v~v~r~~~~~~~-----------------~~~~~g~~~A~~n~CpH~g~~L~~~-~~~ 73 (133)
T 1g8k_B 12 SVAKNLAANEPVSFTYPDTSSPCVAVKLGAPVPG-----------------GVGPDDDIVAYSVLCTHMGCPTSYD-SSS 73 (133)
T ss_dssp EEGGGCCBTCCEEEECSSTTSEEEEEECSSCCTT-----------------CBTTTTCEEEEECBCTTTCCBCEEE-TTT
T ss_pred EEHHHCCCCCeEEEEecCCCceEEEEEccccccc-----------------cccCCCEEEEEeCcCCCCCCCCCcc-cCC
Confidence 58999999999999997 899999986432110 0123789999999999999999874 345
Q ss_pred CEEEccCCCeEeCC--CCceecCCCCCCCcCceEEEee-CCEEEE
Q 025100 216 GGWFCPCHGSHYDI--SGRIRKGPAPYNLEVPSYSFLD-ENKMLI 257 (258)
Q Consensus 216 gg~~CPCHGS~FDl--sGrv~~GPAp~nL~vppy~~~~-d~~I~I 257 (258)
+.|.||||||+||+ +|+++.||++.+|+.+++++.+ ++.|+|
T Consensus 74 ~~i~CP~Hg~~Fd~~~~G~~~~gP~~~~L~~~~v~v~~~g~~V~v 118 (133)
T 1g8k_B 74 KTFSCPCHFTEFDAEKAGQMICGEATADLPRVLLRYDAASDALTA 118 (133)
T ss_dssp TEEECTTTCCEEEGGGTTEEEESSCSSCCCEEEEEEETTTTEEEE
T ss_pred CEEECCCCCCEECCCCCCCEEcCCCCCCCCEEEEEEECCCCEEEE
Confidence 88999999999999 8999999999999998888743 566775
No 14
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Probab=99.85 E-value=1.4e-21 Score=152.98 Aligned_cols=92 Identities=22% Similarity=0.343 Sum_probs=82.4
Q ss_pred eeCCCCCCCCeEEEEECCEE-EEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCCCC
Q 025100 138 VDLSSIEPGSTVTVKWRGKP-VFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFG 216 (258)
Q Consensus 138 VdlsdL~pG~~~~v~w~GkP-V~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd~g 216 (258)
..+++|++|+.+.+.+.|++ |+|+|. +++++|+.++|||+||++.++..+.+
T Consensus 8 ~~~~~l~~g~~~~~~~~g~~~v~v~r~---------------------------~g~~~A~~~~CpH~g~~L~~g~~~~~ 60 (108)
T 2i7f_A 8 CQVASVKDGEPVAVYQEKMPALAVYNV---------------------------DGEVFVTDNLCTHGNAMLTDGYQDGT 60 (108)
T ss_dssp EEGGGCBTTBCEEECCTTSSCEEEEEE---------------------------TTEEEEEESBCSSSSCBGGGSEEETT
T ss_pred EEHhHcCCCCeEEEEECCeeEEEEEEE---------------------------CCEEEEEeCcCCCCCCCCCCCEEeCC
Confidence 57899999999999999999 999862 78999999999999999987655568
Q ss_pred EEEccCCCeEeCC-CCceecCCCCCCCcCceEEEeeCCEEEE
Q 025100 217 GWFCPCHGSHYDI-SGRIRKGPAPYNLEVPSYSFLDENKMLI 257 (258)
Q Consensus 217 g~~CPCHGS~FDl-sGrv~~GPAp~nL~vppy~~~~d~~I~I 257 (258)
.+.||||||+||+ +|+++.+|+..+|+.++.++ +++.|+|
T Consensus 61 ~i~Cp~Hg~~Fdl~tG~~~~~P~~~~L~~~~v~~-~~g~v~v 101 (108)
T 2i7f_A 61 IIECPFHGGSFDIATGAAKAFPCQIPIKTYPVTI-EDGWVCI 101 (108)
T ss_dssp EEECSSTTCEEETTTCCBCSTTCCSCCCEECEEE-ETTEEEE
T ss_pred EEEcCCCCCEEeCCCcCEeCCCCCCCccEEeEEE-ECCEEEE
Confidence 8999999999998 99999999999999888886 7899887
No 15
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D*
Probab=99.84 E-value=5.1e-21 Score=152.19 Aligned_cols=92 Identities=22% Similarity=0.346 Sum_probs=82.3
Q ss_pred eeCCCCCCCCeEEEEECCE-EEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCCCC
Q 025100 138 VDLSSIEPGSTVTVKWRGK-PVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFG 216 (258)
Q Consensus 138 VdlsdL~pG~~~~v~w~Gk-PV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd~g 216 (258)
..+++|++|+.+.+.+.|+ +|+|+|. +++++|+.++|||+||++.++..+.+
T Consensus 9 ~~~~el~~g~~~~~~~~g~~~v~v~r~---------------------------~g~~~A~~n~CpH~g~~L~~g~~~~~ 61 (115)
T 2de6_D 9 CAASDMQPGTIRRVNRVGAAPLAVYRV---------------------------GDQFYATEDTCTHGIASLSEGTLDGD 61 (115)
T ss_dssp EEGGGCCTTEEEEEEETTEEEEEEEEE---------------------------TTEEEEEESBCTTSSCBGGGSEEETT
T ss_pred EEHHHCCCCCeEEEEECCccEEEEEEE---------------------------CCEEEEEeCCCCCCCCCCcCCEEeCC
Confidence 5889999999999999999 9999862 78999999999999999987654568
Q ss_pred EEEccCCCeEeCC-CCceecCCCCCCCcCceEEEeeCCEEEE
Q 025100 217 GWFCPCHGSHYDI-SGRIRKGPAPYNLEVPSYSFLDENKMLI 257 (258)
Q Consensus 217 g~~CPCHGS~FDl-sGrv~~GPAp~nL~vppy~~~~d~~I~I 257 (258)
.|.||||||+||+ +|+++.+|+..+|+.+++++ +++.|+|
T Consensus 62 ~i~CP~Hg~~Fdl~tG~~~~~P~~~~L~~~~v~~-~~g~V~v 102 (115)
T 2de6_D 62 VIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEV-KEGEVYV 102 (115)
T ss_dssp EEECTTTCCEEETTTCCEEETTCCSCCCEEEEEE-SSSEEEE
T ss_pred EEECCCCCCEEcCCCcCEeCCCCcCCCCEEEEEE-ECCEEEE
Confidence 8999999999998 99999999999999888875 7888887
No 16
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=99.83 E-value=9.2e-21 Score=149.03 Aligned_cols=93 Identities=16% Similarity=0.178 Sum_probs=81.9
Q ss_pred eeCCCCCCCCeEEEEE-CCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCCCC
Q 025100 138 VDLSSIEPGSTVTVKW-RGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFG 216 (258)
Q Consensus 138 VdlsdL~pG~~~~v~w-~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd~g 216 (258)
..+++|++|+.+.+.+ .|++|+|+|. .+++++|+.++|||+||++.++..+.+
T Consensus 6 ~~~~~l~~g~~~~~~~~~g~~v~v~r~--------------------------~~g~~~A~~~~CpH~g~~L~~g~~~~~ 59 (111)
T 1vm9_A 6 CSLDDIWVGEMETFETSDGTEVLIVNS--------------------------EEHGVKAYQAMCPHQEILLSEGSYEGG 59 (111)
T ss_dssp EEGGGSCTTCEEEEECTTCCEEEEEEE--------------------------TTTEEEEEESBCSSSSCBGGGSEEETT
T ss_pred EEHHHCCCCCeEEEEEcCCCEEEEEEe--------------------------CCCeEEEEeCcCCCCCcCCCCceEcCC
Confidence 4788999999999999 9999999862 378999999999999999987655568
Q ss_pred EEEccCCCeEeCC-CCceecCCCCCCCcCceEEEeeCCEEEEC
Q 025100 217 GWFCPCHGSHYDI-SGRIRKGPAPYNLEVPSYSFLDENKMLIG 258 (258)
Q Consensus 217 g~~CPCHGS~FDl-sGrv~~GPAp~nL~vppy~~~~d~~I~IG 258 (258)
.|.||||||+||+ +|+++. |+..+|+.++.++ +++.|+|.
T Consensus 60 ~i~Cp~Hg~~Fd~~tG~~~~-p~~~~L~~~~v~~-~~g~v~v~ 100 (111)
T 1vm9_A 60 VITCRAHLWTFNDGTGHGIN-PDDAALAEYPVEV-KGDDIYVS 100 (111)
T ss_dssp EEECTTTCCEEETTTCBBSS-SSSCBCCEECEEE-ETTEEEEC
T ss_pred EEEcCCCCCEEeCCCccCCC-CCcCCcCEEEEEE-ECCEEEEe
Confidence 8999999999999 799998 9889999888886 78999873
No 17
>1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1
Probab=99.82 E-value=2e-22 Score=176.72 Aligned_cols=119 Identities=19% Similarity=0.352 Sum_probs=85.2
Q ss_pred eeeeeCCCCCCCCeEEEEECCEEEEE----EeCCHHHHHhhccCCC---CCCCCcccc-------ccccc-----CCcEE
Q 025100 135 SLEVDLSSIEPGSTVTVKWRGKPVFI----RRRTEEDIKLANSVDL---GSLRDPQQD-------AERVK-----NPEWL 195 (258)
Q Consensus 135 ~v~VdlsdL~pG~~~~v~w~GkPV~I----~rRt~~~i~~~~~~~~---~~lrDP~~~-------~~R~~-----~ge~~ 195 (258)
.+.+|++.| +|+++++ |+||++ ++|+++++.++...+. -.+.|++.. .+|+. +++++
T Consensus 13 ~~~~d~~~i-~~~l~~~---g~pv~vf~yP~~~~p~~l~~l~~~~~~~~v~v~~~~i~v~r~~~~~~r~~ggvg~~g~i~ 88 (204)
T 1jm1_A 13 YKVANIQQV-QQQIKSS---GCAVYFFAYPLTDEPCFLVDLQALTGQQITEIPNPYYGKYAGPLGQIQTIKGVGPNGTIF 88 (204)
T ss_dssp EEEEEHHHH-HHHHHHH---CCCEEEEECSSTTCEEEEEEHHHHHSSCCCEEECTTTTSSCTTGGGCCEEECBTTTTCEE
T ss_pred eEEEccccC-hHHhccC---CceEEEeecCCCCCHHHHHhcccccccceEeeCCceEEEEecCccccccccccccCCEEE
Confidence 445788877 7777544 777777 6777655444433211 113333322 34444 79999
Q ss_pred EEEccccCCCeeccCCC-----------CCCCEEEccCCCeEeCCC--CceecCCCCCCCcCceEEEe-eCCEEEE
Q 025100 196 VVVGVCTHLGCIPLPNA-----------GDFGGWFCPCHGSHYDIS--GRIRKGPAPYNLEVPSYSFL-DENKMLI 257 (258)
Q Consensus 196 a~~~vCTHLGC~p~~~~-----------gd~gg~~CPCHGS~FDls--Grv~~GPAp~nL~vppy~~~-~d~~I~I 257 (258)
|++++|||+||+|.++. .+.+.|+||||||+||+. |+++.||++.+|+.+++++. .++.|+|
T Consensus 89 A~~n~CpH~G~~L~~g~~~p~~~~~~~~~~~~~i~CP~Hgs~FDl~tGG~v~~gPa~~~L~~~~v~v~~~~g~v~v 164 (204)
T 1jm1_A 89 AFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKDGGVVVSGPAPRPLPIVILDYDSSTGDIYA 164 (204)
T ss_dssp EEESBCTTTCCBCCTTEEESSTTSSEEETTTTEEECTTTCCEEEGGGTSEEEESSCCSCCCBEEEEECTTTCEEEE
T ss_pred EEeCcCCCCCcCccccccccccccccccCCCCEEECCCCCCEEeCCCCCeEecCCCCCCCCeEeeEEEecCCEEEE
Confidence 99999999999998652 356899999999999994 69999999999999999873 1677764
No 18
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*
Probab=99.80 E-value=5.9e-20 Score=151.67 Aligned_cols=90 Identities=33% Similarity=0.749 Sum_probs=77.7
Q ss_pred CCCCCCCCeEEEE-ECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcE--EEEEccccCCCeeccCCCCCCC
Q 025100 140 LSSIEPGSTVTVK-WRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEW--LVVVGVCTHLGCIPLPNAGDFG 216 (258)
Q Consensus 140 lsdL~pG~~~~v~-w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~--~a~~~vCTHLGC~p~~~~gd~g 216 (258)
+++|++|+.+.+. +.|.+++++++ .++++ +|+.++|||+||.+.++. +.+
T Consensus 29 ~~dlp~g~~~~~~~~~g~~~ilv~~--------------------------~~G~i~~~A~~n~CpH~g~~L~~g~-~~~ 81 (139)
T 1rfs_A 29 LKTHAPGDRTLTQGLKGDPTYLVVE--------------------------SDKTLATFGINAVCTHLGCVVPFNA-AEN 81 (139)
T ss_dssp HHHSCTTCEEEEECGGGCEEEEEBC--------------------------TTSSBCSEEEECBCTTTCCBCCEET-TTT
T ss_pred HhhCCCCccEEEEecCCCeEEEEEe--------------------------CCCcEEEEEEeCcCCCCCCCCccCC-CCC
Confidence 5779999998887 56778777653 36788 999999999999998765 348
Q ss_pred EEEccCCCeEeCCCCceecCCCCCCCcCceEEEeeCCEEEE
Q 025100 217 GWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLI 257 (258)
Q Consensus 217 g~~CPCHGS~FDlsGrv~~GPAp~nL~vppy~~~~d~~I~I 257 (258)
.|.||||||+||.+|+++.+|++.+|+.+++++ +++.|+|
T Consensus 82 ~i~CP~Hg~~Fd~tG~~~~~P~~~~L~~~~v~v-~~g~V~V 121 (139)
T 1rfs_A 82 KFICPCHGSQYNNQGRVVRGPAPLSLALAHCDV-DDGKVVF 121 (139)
T ss_dssp EEECTTTCCEEETTCCEEESSCCSCCCEEEEEE-ETTEEEE
T ss_pred EEEcCCCCCEECCCCCCccCCCCCCCCEEEEEE-ECCEEEE
Confidence 899999999999999999999999999888886 7899987
No 19
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=99.79 E-value=5e-19 Score=139.51 Aligned_cols=92 Identities=9% Similarity=0.088 Sum_probs=78.4
Q ss_pred eeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCC-cEEEEEccccCCCe-eccCCCCC-
Q 025100 138 VDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNP-EWLVVVGVCTHLGC-IPLPNAGD- 214 (258)
Q Consensus 138 VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~g-e~~a~~~vCTHLGC-~p~~~~gd- 214 (258)
..+++|++|+.+.+.+.|++|+|+|. .++ +++|+.++|||+|| ++..+..+
T Consensus 11 ~~~~el~~g~~~~~~~~g~~i~v~r~--------------------------~~g~~~~A~~n~CpH~g~~~L~~G~~~~ 64 (113)
T 2jo6_A 11 CKIDDILPETGVCALLGDEQVAIFRP--------------------------YHSDQVFAISNIDPFFESSVLSRGLIAE 64 (113)
T ss_dssp EETTTSCTTEEEEEEETTEEEEEEEC--------------------------SSSSCCEEEESSCSSSCCSCSTTSEEEE
T ss_pred eeHHHCCCCCeEEEEECCEEEEEEEE--------------------------CCCCEEEEEeCcCCCCCCcccCCeEEec
Confidence 58899999999999999999999862 367 59999999999999 68765321
Q ss_pred --CC-EEEccCCCeEeCC-CCceecCCCCCCCcCceEEEeeCCEEEE
Q 025100 215 --FG-GWFCPCHGSHYDI-SGRIRKGPAPYNLEVPSYSFLDENKMLI 257 (258)
Q Consensus 215 --~g-g~~CPCHGS~FDl-sGrv~~GPAp~nL~vppy~~~~d~~I~I 257 (258)
.. .+.||||||+||+ +|+++.+|+ .+|+.++.++ +++.|+|
T Consensus 65 ~~g~~~i~CP~Hg~~Fd~~tG~~~~~P~-~~l~~~~v~v-~~g~V~v 109 (113)
T 2jo6_A 65 HQGELWVASPLKKQRFRLSDGLCMEDEQ-FSVKHYEARV-KDGVVQL 109 (113)
T ss_dssp ETTEEEEEETTTTEEEETTTTEETTTTT-TCCCEEEEEE-ETTEEEE
T ss_pred cCCCcEEECCCCCCEEeCCCccCCCCCc-ccccEEeEEE-ECCEEEE
Confidence 22 7999999999999 999999998 7788888876 7889887
No 20
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Probab=99.79 E-value=2.1e-19 Score=143.58 Aligned_cols=92 Identities=16% Similarity=0.065 Sum_probs=78.6
Q ss_pred eeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCe-eccCCCCC--
Q 025100 138 VDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGC-IPLPNAGD-- 214 (258)
Q Consensus 138 VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC-~p~~~~gd-- 214 (258)
..+++|++|+.+.+.+.|++|+|+|. .+++++|+.++|||+|| ++..+..+
T Consensus 10 ~~~~el~~g~~~~~~~~g~~v~v~r~--------------------------~~G~~~A~~n~CpH~g~~~L~~G~~~~~ 63 (119)
T 3c0d_A 10 CQLDDLMPFIGATVLIEGERVALFYI--------------------------PDSGVYAVQDWDPIGKAYVMSRGIVGDI 63 (119)
T ss_dssp EEGGGSCBTCCEEEEETTEEEEEEEE--------------------------TTTEEEEEESEETTTTEECGGGSEEEES
T ss_pred EEHHHCCCCCeEEEEECCeEEEEEEe--------------------------cCCeEEEEeCCCCCCCCccCCCeEEcCC
Confidence 58899999999999999999999862 37899999999999999 67755321
Q ss_pred -CC-EEEccCCCeEeCC-CCceecCCCCCCCcCceEEEeeCCEEEE
Q 025100 215 -FG-GWFCPCHGSHYDI-SGRIRKGPAPYNLEVPSYSFLDENKMLI 257 (258)
Q Consensus 215 -~g-g~~CPCHGS~FDl-sGrv~~GPAp~nL~vppy~~~~d~~I~I 257 (258)
.. .|.||||||+||+ +|+++.+|+ .+|+.+++++ +++.|+|
T Consensus 64 ~g~~~i~CP~Hg~~Fdl~tG~~~~~P~-~~l~~~~v~v-~~g~V~v 107 (119)
T 3c0d_A 64 NGEMCVASPLYKQHFSLKSGQCLEDEA-HCLKTWRVTV-DDNQVCY 107 (119)
T ss_dssp SSSEEEECTTTCCEEETTTCBBSSCTT-CBCCEECEEE-SSSEEEE
T ss_pred CCCeEEECCCCCCEEECCCCcCCCCCC-ceeeEEEEEE-ECCEEEE
Confidence 12 7999999999999 999999998 7788888886 7888887
No 21
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3
Probab=99.75 E-value=2.8e-18 Score=139.35 Aligned_cols=92 Identities=14% Similarity=0.138 Sum_probs=78.5
Q ss_pred eeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCC-cEEEEEccccCCCee-ccCCCC--
Q 025100 138 VDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNP-EWLVVVGVCTHLGCI-PLPNAG-- 213 (258)
Q Consensus 138 VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~g-e~~a~~~vCTHLGC~-p~~~~g-- 213 (258)
..+++|++|+.+.+.+.|++|+|+|. .++ +++|+.++|||+||. +..+..
T Consensus 8 ~~~~el~~g~~~~~~~~g~~i~v~r~--------------------------~~g~~v~A~~n~CpH~g~~~L~~G~~~~ 61 (130)
T 2jza_A 8 CKLDDILPGTGVCALVEQQQIAVFRP--------------------------RNDEQVYAISNIDPFAQASVLSRGIVAE 61 (130)
T ss_dssp EETTTSCTTBCCEEEETTEEEEEEBC--------------------------SSSSCCEEEBCCCTTTSSGGGTSSEEEE
T ss_pred EEHHHCCCCCeEEEEECCcEEEEEEE--------------------------CCCCEEEEEeCcCCCCCCCcCCCccCcc
Confidence 58899999999999999999999862 245 899999999999995 775532
Q ss_pred -CC-CEEEccCCCeEeCC-CCceecCCCCCCCcCceEEEeeCCEEEE
Q 025100 214 -DF-GGWFCPCHGSHYDI-SGRIRKGPAPYNLEVPSYSFLDENKMLI 257 (258)
Q Consensus 214 -d~-gg~~CPCHGS~FDl-sGrv~~GPAp~nL~vppy~~~~d~~I~I 257 (258)
+. ..+.||||||+||+ +|+++.+|+ .+|+.+++++ +++.|+|
T Consensus 62 ~~g~~~i~CP~Hg~~Fdl~tG~~~~~P~-~~L~~~~v~v-~~g~V~V 106 (130)
T 2jza_A 62 HQDDLWVASPLKKQHFRLYDGFCLEDGA-YSVAAYDTQV-TNGNVQI 106 (130)
T ss_dssp SSSSEEEECSSSCCEEETTTCCBSSCCS-SCCBCCCEEE-SSSEEEE
T ss_pred cCCCeEEECCCCCCEEeCCCcCCCCCCc-CcceEEEEEE-ECCEEEE
Confidence 22 27999999999999 999999998 7899999886 7888887
No 22
>4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis}
Probab=99.75 E-value=1.7e-18 Score=139.32 Aligned_cols=94 Identities=16% Similarity=0.158 Sum_probs=77.8
Q ss_pred eeCCCCCCCCeEEEEE-CCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCC---
Q 025100 138 VDLSSIEPGSTVTVKW-RGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAG--- 213 (258)
Q Consensus 138 VdlsdL~pG~~~~v~w-~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~g--- 213 (258)
+.+++|++|+.+.+.. +|++|.|+|. .+++++|+.+.|||.|+.+..+..
T Consensus 14 c~~~dL~~g~~~~~~~~~G~~v~l~r~--------------------------~dG~v~A~~n~CpH~ga~L~~~~~~~~ 67 (119)
T 4aiv_A 14 CAYDHLIPGRGVGVLLDDGSQVALFRL--------------------------DDGSVHAVGNVDPFSGAAVMSRGIVGD 67 (119)
T ss_dssp EEGGGSCTTCCEEEECTTSCEEEEEEC--------------------------TTSCEEEEESBCTTTCCBCGGGSEEEE
T ss_pred eEHHHcCCCCceEEEEcCCcEEEEEEc--------------------------CCCeEEEEECCCCCCCCccccCceecc
Confidence 5889999999998887 5899999862 478999999999999999876531
Q ss_pred --CCCEEEccCCCeEeCC-CCceecCCCCCCCcCceEEEeeCCEEEEC
Q 025100 214 --DFGGWFCPCHGSHYDI-SGRIRKGPAPYNLEVPSYSFLDENKMLIG 258 (258)
Q Consensus 214 --d~gg~~CPCHGS~FDl-sGrv~~GPAp~nL~vppy~~~~d~~I~IG 258 (258)
+...+.||+|||+||+ +|+++.+|+ .+|+.+|.++..|+.|+|+
T Consensus 68 ~~~~~~i~CP~Hg~~Fdl~tG~~~~~p~-~~l~~ypv~ve~dG~V~V~ 114 (119)
T 4aiv_A 68 RGGRAMVQSPILKQAFALDDGSCLDDPR-VSVPVYPARVTPEGRIQVA 114 (119)
T ss_dssp ETTEEEEECTTTCCEEETTTCBBSSCTT-CBCCEECEEECTTSEEEEE
T ss_pred ccCCCEEECCCCCCEEeCCCCcCcCCCC-CccceEEEEEEeCCEEEEe
Confidence 1235889999999998 999999987 4688888887447899984
No 23
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus}
Probab=99.54 E-value=8.6e-19 Score=144.44 Aligned_cols=91 Identities=30% Similarity=0.601 Sum_probs=75.0
Q ss_pred eCCCCCCCCeEEEE--ECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCc--EEEEEccccCCCeeccCCCCC
Q 025100 139 DLSSIEPGSTVTVK--WRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPE--WLVVVGVCTHLGCIPLPNAGD 214 (258)
Q Consensus 139 dlsdL~pG~~~~v~--w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge--~~a~~~vCTHLGC~p~~~~gd 214 (258)
=++++++|+.+.+. ..+..|++++ .+++ ++|+.++|||+||.+.++. +
T Consensus 22 ~~~~l~~g~~~~v~~l~g~~~vlv~~---------------------------~~G~~~v~A~~n~CpH~g~~L~~g~-~ 73 (133)
T 3azc_A 22 YLAKHLPGDRSLAQGIKGDPTYVIVT---------------------------EDHQIANYGLNAVCTHLGCVVPWNV-S 73 (133)
Confidence 45678899998887 5555555543 2566 9999999999999998775 4
Q ss_pred CCEEEccCCCeEeCCCCceecCCCCCCCcCceEEEeeCCEEEE
Q 025100 215 FGGWFCPCHGSHYDISGRIRKGPAPYNLEVPSYSFLDENKMLI 257 (258)
Q Consensus 215 ~gg~~CPCHGS~FDlsGrv~~GPAp~nL~vppy~~~~d~~I~I 257 (258)
.+.|.||||||+||.+|+++.+|+..+|+.+++++.+++.|+|
T Consensus 74 ~~~i~CP~Hg~~Fd~tG~~~~~P~~~~L~~ypv~v~~~g~V~V 116 (133)
T 3azc_A 74 ENKFICPCHGSQYDSTGKVVRGPAPLSLALVKATVTEDDKLVF 116 (133)
Confidence 5789999999999999999999999999988888536778876
No 24
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus}
Probab=99.67 E-value=2.6e-17 Score=137.25 Aligned_cols=92 Identities=16% Similarity=0.174 Sum_probs=74.7
Q ss_pred eeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCC---
Q 025100 138 VDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGD--- 214 (258)
Q Consensus 138 VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd--- 214 (258)
..+++|++|+.+.+.+.|++|+|+| .+++++|+.++|||+||.|.++..+
T Consensus 21 ~~~~el~~g~~~~~~~~g~~i~v~r---------------------------~~G~v~A~~n~CpH~g~~L~~G~~~~~~ 73 (157)
T 3d89_A 21 GREEDIRKSERMTAVVHDREVVIFY---------------------------HKGEYHAMDIRCYHSGGPLHLGEIEDFN 73 (157)
T ss_dssp EEHHHHHHHSEEEEEETTEEEEEEE---------------------------ETTEEEEEESBCTTTCCBGGGSEEEEET
T ss_pred EEHHHCCCCCeEEEEECCEEEEEEE---------------------------ECCEEEEEeCCCCCCCCCCcCCEecCcC
Confidence 5788898999999999999999986 2789999999999999999876432
Q ss_pred C-CEEEccCCCeEeCC-CCceec---CC----CC-------CCCcCceEEEeeCCEEEE
Q 025100 215 F-GGWFCPCHGSHYDI-SGRIRK---GP----AP-------YNLEVPSYSFLDENKMLI 257 (258)
Q Consensus 215 ~-gg~~CPCHGS~FDl-sGrv~~---GP----Ap-------~nL~vppy~~~~d~~I~I 257 (258)
. +.|.||||||+||+ +|+++. +| +. ..|..++.++ .++.|+|
T Consensus 74 g~~~i~CP~Hgw~Fdl~tG~~~~~~i~P~~~~~~~~~~~~~~~L~~~~v~v-~~G~V~V 131 (157)
T 3d89_A 74 GQSCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGVKQRIHTVKV-DNGNIYV 131 (157)
T ss_dssp TEEEEECTTTCCEEETTTCEEEEEECCCC-----CEEEEEEECSCEEEEEE-ETTEEEE
T ss_pred CCCEEECCCCCCEEecCCcCEEEeccCCCccccccccccccCcceEEEEEE-ECCEEEE
Confidence 1 57999999999999 999985 23 21 3577666664 7888887
No 25
>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A*
Probab=99.61 E-value=1.5e-15 Score=141.17 Aligned_cols=92 Identities=15% Similarity=0.187 Sum_probs=79.7
Q ss_pred eeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCCCCE
Q 025100 138 VDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGG 217 (258)
Q Consensus 138 VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd~gg 217 (258)
+..++| +|+.+.+.+.|++|+|+|. .+|+++|+.++|||.||.+..+..+.+.
T Consensus 13 ~~~~el-~g~~~~~~~~g~~vvv~R~--------------------------~~G~v~a~~n~CpHrg~~L~~G~~~~~~ 65 (349)
T 3gke_A 13 ALPEEL-SEKPLGRTILDTPLALYRQ--------------------------PDGVVAALLDICPHRFAPLSDGILVNGH 65 (349)
T ss_dssp ECGGGC-CSSCEEEEETTEEEEEEEC--------------------------TTSCEEEEESSCTTTCCCGGGCEEETTE
T ss_pred EEHHHC-CCCeEEEEECCEEEEEEEc--------------------------CCCcEEEEeCcCCCCCcCCccCCccceE
Confidence 467788 8999999999999999862 4789999999999999999987666789
Q ss_pred EEccCCCeEeCCCCceecCCC-------CCCCcCceEEEeeCCEEEE
Q 025100 218 WFCPCHGSHYDISGRIRKGPA-------PYNLEVPSYSFLDENKMLI 257 (258)
Q Consensus 218 ~~CPCHGS~FDlsGrv~~GPA-------p~nL~vppy~~~~d~~I~I 257 (258)
+.||||||+||++|+++.+|. ...|..+|.+. .++.|+|
T Consensus 66 i~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~l~~~~v~~-~~G~V~v 111 (349)
T 3gke_A 66 LQCPYHGLEFDGGGQCVHNPHGNGARPASLNVRSFPVVE-RDALIWI 111 (349)
T ss_dssp EECTTTCCEECTTCCEEECCSTTCCCCGGGCCCBCCEEE-ETTEEEE
T ss_pred EEECCCCCEEcCCCCccccCccccccccccccceeeEEE-ECCEEEE
Confidence 999999999999999999983 35677777765 7888887
No 26
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis}
Probab=99.59 E-value=2.3e-15 Score=141.73 Aligned_cols=93 Identities=15% Similarity=0.149 Sum_probs=79.3
Q ss_pred eeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCCCCCCE
Q 025100 138 VDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGG 217 (258)
Q Consensus 138 VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~gd~gg 217 (258)
...++|++|+.+.+.+.|++|+|+|. .+|+++|+.++|+|.||.+..+.++.+.
T Consensus 30 ~~~~el~~g~~~~~~~~g~~vvl~R~--------------------------~~G~v~a~~n~CpHrga~L~~g~~~~~~ 83 (386)
T 2zyl_A 30 GVAKDYLEGKPHGVEAFGTKLVVFAD--------------------------SHGDLKVLDGYCRHMGGDLSEGTVKGDE 83 (386)
T ss_dssp EEGGGGCSSSCEEEEETTEEEEEEEC--------------------------TTSCEEEEESBCTTTCCBGGGSEEETTE
T ss_pred EEHHHCCCCCeEEEEECCeEEEEEEC--------------------------CCCCEEEEcCcCCCCCCCCCCCcccCCE
Confidence 57788999999999999999999862 4789999999999999999877666689
Q ss_pred EEccCCCeEeCCCCceecCCCC------CCCcCceEEEeeCCEEEE
Q 025100 218 WFCPCHGSHYDISGRIRKGPAP------YNLEVPSYSFLDENKMLI 257 (258)
Q Consensus 218 ~~CPCHGS~FDlsGrv~~GPAp------~nL~vppy~~~~d~~I~I 257 (258)
+.||||||+||++|+++.+|+. ..|..+|.+. .++.|+|
T Consensus 84 i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~l~~~~v~~-~~G~v~v 128 (386)
T 2zyl_A 84 VACPFHDWRWGGDGRCKLVPYARRTPRMARTRSWTTDV-RSGLLFV 128 (386)
T ss_dssp EECTTTCCEEETTSBEEECTTCSSCCTTCBCCEECEEE-ETTEEEE
T ss_pred EEeCCCCCEECCCCCccccCcccccCcccCcceEeEEE-ECCEEEE
Confidence 9999999999999999999873 3566666654 7888876
No 27
>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans}
Probab=99.56 E-value=9.4e-15 Score=139.22 Aligned_cols=93 Identities=20% Similarity=0.275 Sum_probs=78.6
Q ss_pred eeeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCC--CC
Q 025100 137 EVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNA--GD 214 (258)
Q Consensus 137 ~VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~--gd 214 (258)
.+..++|++|+.+.+.+.|.+|+|+| .+|+++|+.++|||.||.+..+. ++
T Consensus 38 V~~~~ELp~G~~~~v~i~G~~VvV~R---------------------------~dG~v~A~~N~CpHRGa~Ls~G~~~~~ 90 (394)
T 3gcf_A 38 AAFDHELAEGEFVAVTMLGEKVLLTR---------------------------AKGEVKAIADGCAHRGVPFSKEPLCFK 90 (394)
T ss_dssp EEEGGGCCBTCEEEEEETTEEEEEEE---------------------------ETTEEEEEESSCTTTCCCGGGSCBCSS
T ss_pred EEEHHHCCCCCeEEEEECCEEEEEEE---------------------------eCCeEEEeeCcCCCCCCCCcCCcccCc
Confidence 35788999999999999999999975 37999999999999999999764 45
Q ss_pred CCEEEccCCCeEeCC-CCceecCCC--------CCCCcCceEEEeeCCEEEE
Q 025100 215 FGGWFCPCHGSHYDI-SGRIRKGPA--------PYNLEVPSYSFLDENKMLI 257 (258)
Q Consensus 215 ~gg~~CPCHGS~FDl-sGrv~~GPA--------p~nL~vppy~~~~d~~I~I 257 (258)
.+.+.||||||+||+ +|+++.+|+ ...|..+++++ .++.|+|
T Consensus 91 ~~~I~CPyHGW~Fdl~dG~cv~iP~~p~~~~~~~~~L~~ypV~e-~~G~VfV 141 (394)
T 3gcf_A 91 AGTVSCWYHGWTYDLDDGRLVDVLTSPGSPVIGKIGIKVYPVQV-AQGVVFV 141 (394)
T ss_dssp TTEEECTTTCEEEETTTCBEEEETTSTTCTTTTSCBCCEECEEE-ETTEEEE
T ss_pred CCEEECCCCCcEEECCCCceeccCCCcccccccccCceEEEEEE-ECCcEEE
Confidence 689999999999999 999998764 34566666654 7888876
No 28
>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas}
Probab=99.55 E-value=1.1e-14 Score=138.53 Aligned_cols=93 Identities=16% Similarity=0.177 Sum_probs=79.6
Q ss_pred eeeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCC--CC
Q 025100 137 EVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNA--GD 214 (258)
Q Consensus 137 ~VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~--gd 214 (258)
.+..++|++|+.+.+.+.|++|+|+| .+|+++|+.++|||.||.+..+. ++
T Consensus 35 V~~~~ELp~G~~~~v~i~G~~VvV~R---------------------------~dG~v~A~~N~CpHRGa~Ls~G~~~~~ 87 (389)
T 3gkq_A 35 VRLSAEVAEASPVPVQLLGEKVLLNR---------------------------VDGVVHAIADRCLHRGVTLSDKVECYS 87 (389)
T ss_dssp EEEGGGSCBTCCEEEEETTEEEEEEE---------------------------ETTEEEEEESSCTTTCCCGGGGCCCSB
T ss_pred EEEHHHCCCCCeEEEEECCEEEEEEE---------------------------eCCeEEEeCCcCCCCCCCccCCcccCc
Confidence 35888999999999999999999975 37999999999999999998764 45
Q ss_pred CCEEEccCCCeEeCC-CCceecCCC--------CCCCcCceEEEeeCCEEEE
Q 025100 215 FGGWFCPCHGSHYDI-SGRIRKGPA--------PYNLEVPSYSFLDENKMLI 257 (258)
Q Consensus 215 ~gg~~CPCHGS~FDl-sGrv~~GPA--------p~nL~vppy~~~~d~~I~I 257 (258)
.+.+.||||||+||+ +|+++..|+ ...|..++.++ .++.|+|
T Consensus 88 ~~~I~CPyHGW~Fdl~dG~cv~iP~~P~~~~~~~~~L~~ypV~e-~~G~VfV 138 (389)
T 3gkq_A 88 KATISCWYHGWTYRWDNGKLVDILTNPTSVQIGRHALKTYPVRE-EKGLVFL 138 (389)
T ss_dssp TTEEECTTTCEEEETTTCBEEEETTCTTCTTTTSCBCCBCCEEE-ETTEEEE
T ss_pred CCEEECCCCCCEEECCCCCeecccCCcccccccccCCcEEEEEE-ECCeEEE
Confidence 689999999999999 999998654 35677777775 7888876
No 29
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=99.54 E-value=1.3e-14 Score=138.43 Aligned_cols=93 Identities=22% Similarity=0.363 Sum_probs=77.5
Q ss_pred eeCCCCC-CCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeecc-CCCCCC
Q 025100 138 VDLSSIE-PGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPL-PNAGDF 215 (258)
Q Consensus 138 VdlsdL~-pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~-~~~gd~ 215 (258)
+..++|+ +|+.+++.+.|.+|+|+|. .+|+++|+.++|+|.||.+. .+.++.
T Consensus 48 ~~~~elp~~G~~~~~~i~g~~vvv~R~--------------------------~dG~v~A~~n~CpHrga~L~~~g~~~~ 101 (412)
T 3vca_A 48 VPVCQLAKAGSYTTLRVGAYEVVIVRS--------------------------RDGEVRAFHNSCRHRGSLICKARQGQV 101 (412)
T ss_dssp EEGGGGCSTTEEEEEEETTEEEEEEEC--------------------------TTSCEEEEESSCTTTCCCSCCSSEEEC
T ss_pred EEHHHCCCCCCeEEEEECCEEEEEEEc--------------------------CCCCEEEecccCCCCCCEeecccccCC
Confidence 5778897 6999999999999999862 47899999999999999997 455566
Q ss_pred CEEEccCCCeEeCCCCceecCCCC--------CCCcCceEEEeeCCEEEE
Q 025100 216 GGWFCPCHGSHYDISGRIRKGPAP--------YNLEVPSYSFLDENKMLI 257 (258)
Q Consensus 216 gg~~CPCHGS~FDlsGrv~~GPAp--------~nL~vppy~~~~d~~I~I 257 (258)
+.|.||||||+||++|+++.+|+. .+|..++.++ .++.|+|
T Consensus 102 ~~i~CPyHgw~fdldG~~~~~P~~~~~~~~~~~~L~~~~v~~-~~G~V~v 150 (412)
T 3vca_A 102 AKLVCPYHQWTYELDGKLIWANDMGPDFDASKYGLKPVNLRN-LDGLIYI 150 (412)
T ss_dssp SSEECTTTCCEECTTSCEEECTTCCTTCCGGGCSCCEEEEEE-ETTEEEE
T ss_pred CEEEcCCCCCEEcCCCccccCCccccccCcccCCCcEEEEEE-ECCEEEE
Confidence 789999999999999999999863 3566555553 7888887
No 30
>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A*
Probab=99.52 E-value=3.2e-14 Score=136.12 Aligned_cols=92 Identities=17% Similarity=0.252 Sum_probs=77.0
Q ss_pred eeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCC--CCC
Q 025100 138 VDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNA--GDF 215 (258)
Q Consensus 138 VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~--gd~ 215 (258)
...++|++|+.+.+.+.|++|+|+| .+|+++|+.++|+|.||.+..+. ++.
T Consensus 48 ~~~~el~~g~~~~~~~~g~~vvl~r---------------------------~~G~v~a~~n~CpHrga~L~~g~~~~~~ 100 (446)
T 1z01_A 48 LFTHELEEDQVQGIQICGVPIVLRR---------------------------VNGKVFALKDQCLHRGVRLSEKPTCFTK 100 (446)
T ss_dssp EEGGGSCBTCEEEEEETTEEEEEEE---------------------------ETTEEEEEESSCTTTCCCGGGSCCCSST
T ss_pred EEHHHCCCCCeEEEEECCEEEEEEE---------------------------eCCEEEEEeCcCCCCcCCCCCCccCCCC
Confidence 5778898999999999999999875 37899999999999999998774 456
Q ss_pred CEEEccCCCeEeCC-CCceecCCC-C-------CCCcCceEEEeeCCEEEE
Q 025100 216 GGWFCPCHGSHYDI-SGRIRKGPA-P-------YNLEVPSYSFLDENKMLI 257 (258)
Q Consensus 216 gg~~CPCHGS~FDl-sGrv~~GPA-p-------~nL~vppy~~~~d~~I~I 257 (258)
+.|.||||||+||+ +|+++.+|+ | ..|..++++. .++.|+|
T Consensus 101 ~~i~CpyHgw~fd~~~G~~~~~p~~p~~~~~~~~~l~~~~v~~-~~G~V~v 150 (446)
T 1z01_A 101 STISCWYHGFTFDLETGKLVTIVANPEDKLIGTTGVTTYPVHE-VNGMIFV 150 (446)
T ss_dssp TEEECTTTCEEEETTTCBEEEETTCTTCTTTTSCBCCEECEEE-ETTEEEE
T ss_pred CEEEeCCCCeEEeCCCCCccccCCCccccCcccCCCcEEEEEE-ECCEEEE
Confidence 89999999999998 999998764 2 3566555553 7888876
No 31
>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A*
Probab=99.52 E-value=3.6e-14 Score=133.31 Aligned_cols=92 Identities=16% Similarity=0.170 Sum_probs=77.9
Q ss_pred eeCCCCCCCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCC--CCC
Q 025100 138 VDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNA--GDF 215 (258)
Q Consensus 138 VdlsdL~pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~--gd~ 215 (258)
...++|++|+.+.+.+.|++|+|+| .+|+++|+.++|+|.||.|..+. ++.
T Consensus 33 ~~~~el~~g~~~~~~~~g~~vvl~R---------------------------~~G~v~a~~n~CpHrga~L~~g~~~~~~ 85 (392)
T 2de6_A 33 MFSKEINEGEPKTLKLLGENLLVNR---------------------------IDGKLYCLKDRCLHRGVQLSVKVECKTK 85 (392)
T ss_dssp EEGGGSCBTCCEEEEETTEEEEEEE---------------------------ETTEEEEEESSCTTTCCCGGGGCCCCST
T ss_pred EEHHHCCCCCeEEEEECCEEEEEEE---------------------------eCCEEEEEeCcCCCCCCCCcCCcccCCC
Confidence 5778999999999999999999985 27899999999999999998764 346
Q ss_pred CEEEccCCCeEeCC-CCceecCCC--------CCCCcCceEEEeeCCEEEE
Q 025100 216 GGWFCPCHGSHYDI-SGRIRKGPA--------PYNLEVPSYSFLDENKMLI 257 (258)
Q Consensus 216 gg~~CPCHGS~FDl-sGrv~~GPA--------p~nL~vppy~~~~d~~I~I 257 (258)
+.+.||||||+||+ +|+++.+|+ ...|..++.+. .++.|+|
T Consensus 86 ~~i~CpyHgw~f~~~~G~~~~~p~~p~~~~~~~~~l~~~~v~~-~~G~v~v 135 (392)
T 2de6_A 86 STITCWYHAWTYRWEDGVLCDILTNPTSAQIGRQKLKTYPVQE-AKGCVFI 135 (392)
T ss_dssp TEEECTTTCEEEETTTCBEEEETTCTTCTTTTSCBCCBCCEEE-ETTEEEE
T ss_pred CEEEeCCCCCEEcCCCCccccccCCccccccccCCCceEeEEE-ECCEEEE
Confidence 89999999999998 999998754 24677777664 7888886
No 32
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Probab=99.52 E-value=3e-14 Score=135.77 Aligned_cols=93 Identities=22% Similarity=0.303 Sum_probs=77.4
Q ss_pred eeCCCCC-CCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccC-CCCCC
Q 025100 138 VDLSSIE-PGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLP-NAGDF 215 (258)
Q Consensus 138 VdlsdL~-pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~-~~gd~ 215 (258)
+..++|+ +|+.+++.+.|.+|+|+|. .+|+++|+.|+|+|.|+.+.. +.++.
T Consensus 46 ~~~~elp~~G~~~~~~i~g~~vvv~R~--------------------------~dG~v~A~~n~C~Hrga~L~~~g~~~~ 99 (409)
T 3n0q_A 46 IPACELDKPGSYVTHQVGNYNVIIVRG--------------------------ADNVIRAFHNACRHRGSVICKAKKGNN 99 (409)
T ss_dssp EEGGGSCSTTEEEEEEETTEEEEEEEC--------------------------TTSCEEEEESCCTTTCCCSCCSSEEEC
T ss_pred EEHHHCCCCCCeEEEEECCEEEEEEEc--------------------------CCCCEEeecCcCCcCcCCccCcCccCC
Confidence 5778897 6999999999999999862 478999999999999999985 55566
Q ss_pred CEEEccCCCeEeCCCCceecCCCC--------CCCcCceEEEeeCCEEEE
Q 025100 216 GGWFCPCHGSHYDISGRIRKGPAP--------YNLEVPSYSFLDENKMLI 257 (258)
Q Consensus 216 gg~~CPCHGS~FDlsGrv~~GPAp--------~nL~vppy~~~~d~~I~I 257 (258)
+.|.||+|||+||++|+++.+|+. .+|..++.+. .++.|+|
T Consensus 100 ~~i~CpyHgw~fd~dG~~~~~P~~~~~~~~~~~~L~~~~v~~-~~G~Vfv 148 (409)
T 3n0q_A 100 PKLVCPYHQWTYELDGRLLWARDMGPDFEPSRHGLKTVHCRE-LAGLIYI 148 (409)
T ss_dssp SSEECTTTCCEECTTSCEEECTTCCTTCCGGGCSCCEEEEEE-ETTEEEE
T ss_pred CEEEECCCCCEEeCCCCcccCCcCCcccCcccCCCceEEEEE-ECCEEEE
Confidence 789999999999999999998852 4566555543 7888886
No 33
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=99.51 E-value=4.3e-14 Score=135.27 Aligned_cols=94 Identities=17% Similarity=0.273 Sum_probs=75.7
Q ss_pred eeCCCCC-CCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCC-CCC
Q 025100 138 VDLSSIE-PGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNA-GDF 215 (258)
Q Consensus 138 VdlsdL~-pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~-gd~ 215 (258)
...++|+ +|+.+++.+.|.+|+|+|. .+|+++|+.++|+|.||.+..+. ++.
T Consensus 42 ~~~~el~~~g~~~~~~~~~~~vvv~R~--------------------------~~G~v~a~~n~CpHrga~L~~g~~g~~ 95 (454)
T 2gbw_A 42 GHESLVPKPGDFITTYMAEDKVILSHQ--------------------------SDGTFRAFINSCSHRGNQICHADSGNA 95 (454)
T ss_dssp EEGGGSCSTTEEEEEEETTEEEEEEEC--------------------------TTSCEEEEESSCTTTCCCSCCCSEEEC
T ss_pred eEHHHCCCCCCeEEEEECCeEEEEEEc--------------------------CCCCEEEEeccCCCCCCCCcccccCCc
Confidence 5778898 6999999999999999862 47899999999999999998654 345
Q ss_pred CEEEccCCCeEeCCCCceecCCCCCC----------CcCceEEE-eeCCEEEE
Q 025100 216 GGWFCPCHGSHYDISGRIRKGPAPYN----------LEVPSYSF-LDENKMLI 257 (258)
Q Consensus 216 gg~~CPCHGS~FDlsGrv~~GPAp~n----------L~vppy~~-~~d~~I~I 257 (258)
+.|.||||||+||++|+++.+|+... +.+.+|.+ +.++.|+|
T Consensus 96 ~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~G~v~v 148 (454)
T 2gbw_A 96 KAFVCNYHGWVFGQDGSLVDVPLESRCYHNSLDKQKLAAKSVRVETYKGFIFG 148 (454)
T ss_dssp SEEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGCCCCEEEEEEETTEEEE
T ss_pred CEEEeCCCCCEecCCCCcccCCcccccccccCCHhhCCCeeEEEEEECCEEEE
Confidence 78999999999999999999987431 12334554 36888876
No 34
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=99.49 E-value=5.3e-14 Score=134.25 Aligned_cols=93 Identities=23% Similarity=0.323 Sum_probs=77.2
Q ss_pred eeCCCCC-CCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCC-CCC
Q 025100 138 VDLSSIE-PGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNA-GDF 215 (258)
Q Consensus 138 VdlsdL~-pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~-gd~ 215 (258)
...++|+ +|+.+++.+.|.+|+|+|. .+|+++|+.++|+|.||.+..+. ++.
T Consensus 41 ~~~~el~~~g~~~~~~~~~~~vvv~R~--------------------------~~G~v~a~~n~CpHrga~L~~g~~g~~ 94 (447)
T 2bmo_A 41 THDSLIPSPGDYVKAKMGVDEVIVSRQ--------------------------NDGSVRAFLNVCRHRGKTLVHAEAGNA 94 (447)
T ss_dssp EEGGGSCSTTEEEEEEETTEEEEEEEC--------------------------TTSCEEEEESBCTTTCCBCCCSSEEEC
T ss_pred eEHHHCCCCCCeEEEEECCeeEEEEEC--------------------------CCCCEEEEeccCcCCCCCccccccCCc
Confidence 5778897 6999999999999999862 47899999999999999998654 345
Q ss_pred CEEEccCCCeEeCCCCceecCCCC------------CCCcCce-EEEeeCCEEEE
Q 025100 216 GGWFCPCHGSHYDISGRIRKGPAP------------YNLEVPS-YSFLDENKMLI 257 (258)
Q Consensus 216 gg~~CPCHGS~FDlsGrv~~GPAp------------~nL~vpp-y~~~~d~~I~I 257 (258)
+.|.||||||+||++|+++..|+. ..|..++ ++. .++.|+|
T Consensus 95 ~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~v~~-~~G~v~v 148 (447)
T 2bmo_A 95 KGFVCGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIES-FHGFIYG 148 (447)
T ss_dssp SEEECTTTCCEEETTSCEEECTTHHHHTGGGCCGGGCCCCBCSEEEE-ETTEEEE
T ss_pred CeEECCCCcchhcCCCcccccCcccccccccCCHhHCCCcccceEEE-ECCEEEE
Confidence 789999999999999999999863 2566665 654 6888876
No 35
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=99.48 E-value=1e-13 Score=133.38 Aligned_cols=94 Identities=19% Similarity=0.264 Sum_probs=76.0
Q ss_pred eeCCCCCC-CCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCC-CCC
Q 025100 138 VDLSSIEP-GSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNA-GDF 215 (258)
Q Consensus 138 VdlsdL~p-G~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~-gd~ 215 (258)
...++|++ |+.+++.+.|.+|+|+|. .+++++|+.++|+|.||.+..+. ++.
T Consensus 50 ~~~~el~~~g~~~~~~~~g~~vvv~R~--------------------------~~G~v~a~~n~C~Hrga~L~~g~~~~~ 103 (470)
T 2b1x_A 50 AHESEIPERGDYVVRYISEDQFIVCRD--------------------------EGGEIRGHLNACRHRGMQVCRAEMGNT 103 (470)
T ss_dssp EEGGGSCSTTEEEEEEETTEEEEEEEC--------------------------TTSCEEEEESSCTTTCCCSCCSSEEEC
T ss_pred eeHHHCCCCCCeEEEEECCeEEEEEEc--------------------------CCCCEEEEecccCCCCCEeeccCcCCC
Confidence 57888985 788899999999999862 47899999999999999997654 233
Q ss_pred CEEEccCCCeEeCCCCceecCCCCC----------CCcCceE-EEe-eCCEEEE
Q 025100 216 GGWFCPCHGSHYDISGRIRKGPAPY----------NLEVPSY-SFL-DENKMLI 257 (258)
Q Consensus 216 gg~~CPCHGS~FDlsGrv~~GPAp~----------nL~vppy-~~~-~d~~I~I 257 (258)
+.|.||||||+||++|+++.+|+.. .+.++++ ++. .++.|+|
T Consensus 104 ~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~p~ve~~~G~Vfv 157 (470)
T 2b1x_A 104 SHFRCPYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWNLRPMPNLASYKGLIFG 157 (470)
T ss_dssp SEEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGGSCCBCSEEEEETTEEEE
T ss_pred CEEEECCCCCeecCCCceeecCcccccccccCCHhhCCCcccceEEEECCEEEE
Confidence 6899999999999999999998742 1445566 553 3888886
No 36
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=99.46 E-value=8.3e-14 Score=133.74 Aligned_cols=93 Identities=23% Similarity=0.296 Sum_probs=74.1
Q ss_pred eeCCCCC-CCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCC-CCC
Q 025100 138 VDLSSIE-PGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNA-GDF 215 (258)
Q Consensus 138 VdlsdL~-pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~-gd~ 215 (258)
...++|+ +|+.+++.+.|.+|+|+|. .+++++|+.++|+|.||.+..+. ++.
T Consensus 60 ~~~~el~~~g~~~~~~i~~~~vvv~R~--------------------------~~G~v~a~~n~CpHrga~L~~g~~g~~ 113 (460)
T 1uli_A 60 GHETQIPKAGDFMTNYMGEDPVMVVRQ--------------------------KNGEIRVFLNQCRHRGMRICRADGGNA 113 (460)
T ss_dssp EEGGGSCSTTEEEEEEETTEEEEEEEC--------------------------TTSCEEEEESCCTTTCCCSCCSSEEEC
T ss_pred EEHHHCCCCCCeEEEEECCeEEEEEEc--------------------------CCCCEEEEeeeCCCCCCCCccccCCCC
Confidence 5778897 5778899999999999862 47899999999999999998654 344
Q ss_pred CEEEccCCCeEeCCCCceecCCCCC-----------CCcCceEEEeeCCEEEE
Q 025100 216 GGWFCPCHGSHYDISGRIRKGPAPY-----------NLEVPSYSFLDENKMLI 257 (258)
Q Consensus 216 gg~~CPCHGS~FDlsGrv~~GPAp~-----------nL~vppy~~~~d~~I~I 257 (258)
+.|.||||||+||++|+++.+|+.. .|..++++ +.++.|+|
T Consensus 114 ~~i~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~L~~~~v~-~~~G~V~v 165 (460)
T 1uli_A 114 KSFTCSYHGWAYDTGGNLVSVPFEEQAFPGLRKEDWGPLQARVE-TYKGLIFA 165 (460)
T ss_dssp SCEECTTTCCEECTTCCEEECTTHHHHCTTCCGGGSSCCEEEEE-EETTEEEE
T ss_pred CEEEcCCCCCEEeCCCCEeeCCccccccCCCCHhHcCCceeeEE-EECCEEEE
Confidence 6899999999999999999998631 24433443 36888876
No 37
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=99.36 E-value=2.2e-12 Score=124.68 Aligned_cols=75 Identities=27% Similarity=0.438 Sum_probs=66.2
Q ss_pred eeCCCCC-CCCeEEEEECCEEEEEEeCCHHHHHhhccCCCCCCCCcccccccccCCcEEEEEccccCCCeeccCCC-CCC
Q 025100 138 VDLSSIE-PGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNA-GDF 215 (258)
Q Consensus 138 VdlsdL~-pG~~~~v~w~GkPV~I~rRt~~~i~~~~~~~~~~lrDP~~~~~R~~~ge~~a~~~vCTHLGC~p~~~~-gd~ 215 (258)
...++|+ +|+.+++.+.|.+|+|+|. .+++++|+.++|+|.|+.+..+. ++.
T Consensus 62 ~~~~elp~~G~~~~~~i~~~~vvv~R~--------------------------~dG~v~A~~n~C~Hrga~L~~g~~g~~ 115 (457)
T 3gzx_A 62 GHETHIPKIGDYLTTYMGEDPVIMVRQ--------------------------KDQSIKVFLNQCRHRGMRIVRSDGGNA 115 (457)
T ss_dssp EEGGGSCSTTEEEEEEETTEEEEEEEC--------------------------TTSCEEEEESCCTTTCCCSCCSSEEEC
T ss_pred eEHHHcCCCCCeEEEEECCEEEEEEEC--------------------------CCCeEEEEeCcCCCCCcCccCCCCCcC
Confidence 5778896 6999999999999999862 47999999999999999998764 456
Q ss_pred CEEEccCCCeEeCCCCceecCCC
Q 025100 216 GGWFCPCHGSHYDISGRIRKGPA 238 (258)
Q Consensus 216 gg~~CPCHGS~FDlsGrv~~GPA 238 (258)
+.|.||+|||.||++|+++..|+
T Consensus 116 ~~i~CpyHgw~fd~~G~~~~~P~ 138 (457)
T 3gzx_A 116 KAFTCTYHGWAYDIAGNLVNVPF 138 (457)
T ss_dssp SEEECTTTCCEEETTSCEEECTT
T ss_pred CEEEcCCCCCEecCCCcceecCc
Confidence 78999999999999999999986
No 38
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=94.66 E-value=0.033 Score=38.32 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=25.4
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Q 025100 91 DPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASK 128 (258)
Q Consensus 91 ~~~RR~Fl~~~~~g~~~v~a~~~~~~~~p~v~~~~ps~ 128 (258)
|.+||+||..++.|.+++.+ ...+.|++.++.|..
T Consensus 8 dm~RRqfln~l~~G~~a~~a---~~~~~P~v~ffvpP~ 42 (49)
T 1q90_R 8 DMNKRNIMNLILAGGAGLPI---TTLALGYGAFFVPPS 42 (49)
T ss_dssp CHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHSCC-
T ss_pred ChHHHHHHHHHHHHHHHHHH---HHHHHhhheeecCCc
Confidence 78999999999776544333 246789998887764
No 39
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=81.21 E-value=1.2 Score=28.27 Aligned_cols=13 Identities=23% Similarity=0.192 Sum_probs=9.8
Q ss_pred cchhHHHHHHHHH
Q 025100 92 PSKRAFAYFVLTG 104 (258)
Q Consensus 92 ~~RR~Fl~~~~~g 104 (258)
.+||+||+....+
T Consensus 3 lsRR~FLK~~aaa 15 (35)
T 2pq4_B 3 LSRRSFMKANAVA 15 (35)
T ss_dssp CCSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 5799999976433
No 40
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=25.07 E-value=25 Score=32.87 Aligned_cols=35 Identities=43% Similarity=0.524 Sum_probs=25.8
Q ss_pred CCCeeccCCCCCCCEEEccCCCeEeCCCCceecCC
Q 025100 203 HLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGP 237 (258)
Q Consensus 203 HLGC~p~~~~gd~gg~~CPCHGS~FDlsGrv~~GP 237 (258)
-+|-.|+.+-++...+|-|+|||--|..|+-+..|
T Consensus 272 slGl~pSanig~~~a~fEpvHGSAPdIaGk~iANP 306 (366)
T 3ty4_A 272 SLGLVPSANVGDNFVMSEPVHGSAPDIAGRGIANP 306 (366)
T ss_dssp CGGGCCCEEECSSCEEECCSSCCCTTTTTSSCCCC
T ss_pred chhhhcceeeCCCceEEecCCCChhhcCCCCccCc
Confidence 34544544445556899999999999999877666
No 41
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=24.82 E-value=1e+02 Score=21.53 Aligned_cols=35 Identities=9% Similarity=0.030 Sum_probs=19.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 025100 91 DPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMS 125 (258)
Q Consensus 91 ~~~RR~Fl~~~~~g~~~v~a~~~~~~~~p~v~~~~ 125 (258)
.++|+.|...+-..+.++...++-..++.++..+.
T Consensus 24 KPd~~Ef~~iak~~~iG~~i~G~iGf~Ikli~~~l 58 (61)
T 3mp7_B 24 KPNWATYKRAAKITGLGIILIGLIGMLIRIVGILI 58 (61)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66899999987433222222222345666665543
No 42
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=24.17 E-value=22 Score=32.77 Aligned_cols=34 Identities=44% Similarity=0.622 Sum_probs=24.6
Q ss_pred CCeeccCCCCCCCEEEccCCCeEeCCCCceecCC
Q 025100 204 LGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGP 237 (258)
Q Consensus 204 LGC~p~~~~gd~gg~~CPCHGS~FDlsGrv~~GP 237 (258)
+|-.|+.+-++...+|-|+|||--|..|+-+..|
T Consensus 240 lGl~psanig~~~a~fEp~HGSAPdiaGk~iANP 273 (333)
T 1x0l_A 240 LGLAPSGNIGDTTAVFEPVHGSAPDIAGKGIANP 273 (333)
T ss_dssp STTCEEEEECSSCEEEEESSCCCGGGTTSSCCCC
T ss_pred cccceeeEECCCceEEeCCCCChhhhcCCCCcCc
Confidence 3444443334556799999999999999877666
No 43
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=22.69 E-value=25 Score=32.51 Aligned_cols=34 Identities=41% Similarity=0.731 Sum_probs=24.5
Q ss_pred CCeeccCCCCCCCEEEccCCCeEeCCCCceecCC
Q 025100 204 LGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGP 237 (258)
Q Consensus 204 LGC~p~~~~gd~gg~~CPCHGS~FDlsGrv~~GP 237 (258)
+|-.|+.+-++.+.+|-|.|||--|..|+-+..|
T Consensus 237 lGl~pSanig~~~a~fEp~HGSApdiaGk~iANP 270 (336)
T 1wpw_A 237 LGIAPSANIGDKKALFEPVHGAAFDIAGKNIGNP 270 (336)
T ss_dssp GGGCEEEEECSSCEEEEESSCCCTTTTTSSCCCT
T ss_pred ccccceEEECCCCceEeCCCCCchhhCCCCCcCc
Confidence 3444443334556799999999999999876666
No 44
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=21.04 E-value=29 Score=34.89 Aligned_cols=15 Identities=27% Similarity=0.239 Sum_probs=0.0
Q ss_pred CcchhHHHHHHHHHH
Q 025100 91 DPSKRAFAYFVLTGG 105 (258)
Q Consensus 91 ~~~RR~Fl~~~~~g~ 105 (258)
..+||.||...++++
T Consensus 17 ~~~rr~~~~~~a~~~ 31 (638)
T 3sbq_A 17 GLSRRGFLGASAVTG 31 (638)
T ss_dssp ---------------
T ss_pred Ccchhhhhchhhhhh
Confidence 678999999875544
Done!