BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>025103
MVLLSPSLSLPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVLF
GLSSSLSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYS
SAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKS
ALRVTSSQRMAESSVLDAHTSKVDGSGTKPLSTLCCFNRRARRLSLFYKCFNARQAVGRD
GTFLGKICCLISPSASHR

High Scoring Gene Products

Symbol, full name Information P value
PPD5
PsbP domain protein 5 		protein from Arabidopsis thaliana 1.1e-48

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  025103
        (258 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2144236 - symbol:PPD5 "PsbP domain protein 5" ...   508  1.1e-48   1


>TAIR|locus:2144236 [details] [associations]
            symbol:PPD5 "PsbP domain protein 5" species:3702
            "Arabidopsis thaliana" [GO:0005509 "calcium ion binding"
            evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0015979 "photosynthesis" evidence=IEA] [GO:0009543 "chloroplast
            thylakoid lumen" evidence=ISS] [GO:0031977 "thylakoid lumen"
            evidence=IDA] [GO:0009535 "chloroplast thylakoid membrane"
            evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0000023
            "maltose metabolic process" evidence=RCA] [GO:0010027 "thylakoid
            membrane organization" evidence=RCA] [GO:0019252 "starch
            biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
            diphosphate biosynthetic process, mevalonate-independent pathway"
            evidence=RCA] [GO:0045036 "protein targeting to chloroplast"
            evidence=RCA] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=RCA] InterPro:IPR002683 Pfam:PF01789
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0019898 GO:GO:0005509
            EMBL:AL163815 GO:GO:0009535 GO:GO:0031977 GO:GO:0015979
            GO:GO:0009543 Gene3D:3.40.1000.10 InterPro:IPR016123
            SUPFAM:SSF55724 GO:GO:0009654 EMBL:AY072412 EMBL:AY114705
            IPI:IPI00519791 PIR:T48504 RefSeq:NP_196706.2 UniGene:At.23497
            ProteinModelPortal:P82715 IntAct:P82715 STRING:P82715 PaxDb:P82715
            PRIDE:P82715 EnsemblPlants:AT5G11450.1 GeneID:831016
            KEGG:ath:AT5G11450 TAIR:At5g11450 eggNOG:NOG251236
            HOGENOM:HOG000012630 InParanoid:P82715 OMA:HNVACTA PhylomeDB:P82715
            ProtClustDB:CLSN2690150 BioCyc:MetaCyc:AT5G11450-MONOMER
            Genevestigator:P82715 Uniprot:P82715
        Length = 297

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 107/179 (59%), Positives = 131/179 (73%)

Query:    37 IVCSCASSKPIQ-QNGFCRRDLVXXXXXXXXXXXXPTPGSV---------AGEDVKMASF 86
             I  S  S++ I  + G  RRDLV            P    V         +GE++KM + 
Sbjct:    36 IARSGVSTRSISSEKGLSRRDLVLIGLSSPLSMFLPLSSPVTHAEEDVKMSGEELKMGTM 95

Query:    87 VDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNLII 146
             VD+INAY+Y YP++ PS+K +FKWVESRKPERYSSAAPLSP+ARLRIVSERVD+ DNL+I
Sbjct:    96 VDDINAYSYAYPLDYPSEKLVFKWVESRKPERYSSAAPLSPDARLRIVSERVDLTDNLVI 155

Query:   147 SVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDG 205
             S++IGPPN + L SK+K TW+AK+VADSVLSDKSALRVTSSQR+ ESSVLDAH S +DG
Sbjct:   156 SISIGPPNSR-LTSKEKKTWSAKEVADSVLSDKSALRVTSSQRLEESSVLDAHASDIDG 213


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.132   0.396    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      258       235   0.00088  113 3  11 22  0.39    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  184 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.17u 0.18s 20.35t   Elapsed:  00:00:01
  Total cpu time:  20.17u 0.18s 20.35t   Elapsed:  00:00:01
  Start:  Mon May 20 19:25:00 2013   End:  Mon May 20 19:25:01 2013

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