BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025103
         (258 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P82715|PPD5_ARATH PsbP domain-containing protein 5, chloroplastic OS=Arabidopsis
           thaliana GN=PPD5 PE=1 SV=3
          Length = 297

 Score =  227 bits (578), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 124/215 (57%), Positives = 152/215 (70%), Gaps = 12/215 (5%)

Query: 1   MVLLSPSLSLPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQ-QNGFCRRDLVL 59
           M LL PSL  P     R  R S +  + +       I  S  S++ I  + G  RRDLVL
Sbjct: 1   MALLCPSLPSPNSRLFRC-RSSNISSKYHGASKELMIARSGVSTRSISSEKGLSRRDLVL 59

Query: 60  FGLSSSLSLGFPTPGSV---------AGEDVKMASFVDEINAYTYLYPMELPSKKFLFKW 110
            GLSS LS+  P    V         +GE++KM + VD+INAY+Y YP++ PS+K +FKW
Sbjct: 60  IGLSSPLSMFLPLSSPVTHAEEDVKMSGEELKMGTMVDDINAYSYAYPLDYPSEKLVFKW 119

Query: 111 VESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKD 170
           VESRKPERYSSAAPLSP+ARLRIVSERVD+ DNL+IS++IGPPN + L SK+K TW+AK+
Sbjct: 120 VESRKPERYSSAAPLSPDARLRIVSERVDLTDNLVISISIGPPNSR-LTSKEKKTWSAKE 178

Query: 171 VADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDG 205
           VADSVLSDKSALRVTSSQR+ ESSVLDAH S +DG
Sbjct: 179 VADSVLSDKSALRVTSSQRLEESSVLDAHASDIDG 213


>sp|P84853|RIPL1_PHYDI Ribosome-inactivating protein PD-L1/PD-L2 OS=Phytolacca dioica PE=1
           SV=2
          Length = 261

 Score = 34.7 bits (78), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 8/142 (5%)

Query: 31  RLNNKAIVCSCASS---KPIQQNGF--CRRDLVLFGLSSSLSLGFPTPGSVAGEDVKMAS 85
           R N +  +CS +SS   KPI  N               S + LG     S  G+    +S
Sbjct: 97  RTNVENTLCSSSSSRDAKPINYNSLYSTLEKKAEVNSRSQVQLGIQILSSDIGKISGQSS 156

Query: 86  FVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNLI 145
           F D+  A   L  +++ S+   FK++E++    ++     SPN ++  + E    I   I
Sbjct: 157 FTDKTEAKFLLVAIQMVSEAARFKYIENQVKTNFNR--DFSPNDKILDLEENWGKISTAI 214

Query: 146 ISVTIGP-PNVQFLKSKDKSTW 166
              T G  P    LK+ D + W
Sbjct: 215 HDATNGALPKPLELKNADGTKW 236


>sp|C4L6N3|AROC_EXISA Chorismate synthase OS=Exiguobacterium sp. (strain ATCC BAA-1283 /
           AT1b) GN=aroC PE=3 SV=1
          Length = 387

 Score = 30.8 bits (68), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 130 RLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQR 189
           R++I S++V++   +   VT G P   ++++KD + W     A+ + SD    R  S  R
Sbjct: 48  RMQIESDQVEVRSGIRHGVTTGAPITFWIENKDHTHWKHVMQAEPIESDIEVKRRVSRPR 107


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.133    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,832,614
Number of Sequences: 539616
Number of extensions: 3494801
Number of successful extensions: 7471
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7466
Number of HSP's gapped (non-prelim): 6
length of query: 258
length of database: 191,569,459
effective HSP length: 115
effective length of query: 143
effective length of database: 129,513,619
effective search space: 18520447517
effective search space used: 18520447517
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)