Query 025103
Match_columns 258
No_of_seqs 45 out of 47
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 02:42:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025103.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025103hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00059 PsbP domain-containin 99.8 4.8E-20 1.1E-24 168.7 7.2 198 13-243 39-256 (286)
2 PLN00042 photosystem II oxygen 99.8 3.4E-19 7.4E-24 161.8 6.2 161 49-244 47-231 (260)
3 PF01789 PsbP: PsbP; InterPro 99.7 6.9E-17 1.5E-21 134.5 5.3 125 80-244 20-147 (175)
4 PLN00067 PsbP domain-containin 99.5 2.7E-14 5.8E-19 130.3 6.6 116 88-244 102-236 (263)
5 PLN00066 PsbP domain-containin 99.0 6.8E-10 1.5E-14 101.5 6.3 118 88-244 110-231 (262)
6 PLN03152 hypothetical protein; 98.8 3.3E-08 7.2E-13 89.7 10.5 161 54-244 33-213 (241)
7 PLN00059 PsbP domain-containin 88.8 0.56 1.2E-05 44.5 4.2 41 116-178 140-184 (286)
8 PLN00042 photosystem II oxygen 77.4 3.5 7.5E-05 38.8 4.3 47 135-189 140-199 (260)
9 PLN00064 photosystem II protei 44.2 9.7 0.00021 33.9 0.7 39 45-83 27-66 (166)
10 PF09860 DUF2087: Uncharacteri 40.6 16 0.00034 27.8 1.3 33 165-197 5-37 (71)
11 PF10657 RC-P840_PscD: Photosy 40.5 47 0.001 29.0 4.2 87 148-243 49-136 (144)
12 PF11216 DUF3012: Protein of u 39.0 18 0.00039 24.6 1.2 16 158-173 10-25 (32)
13 PF10518 TAT_signal: TAT (twin 33.6 15 0.00033 23.1 0.2 20 52-71 2-21 (26)
14 PF11548 Receptor_IA-2: Protei 30.8 7.2 0.00016 31.6 -2.0 66 123-188 12-80 (91)
15 PF08379 Bact_transglu_N: Bact 30.6 89 0.0019 23.0 3.9 20 136-155 51-70 (82)
16 COG4740 Predicted metalloprote 30.6 31 0.00066 30.9 1.6 15 201-215 160-174 (176)
17 PLN02999 photosystem II oxygen 29.1 27 0.00059 31.7 1.1 39 48-87 37-75 (190)
18 PF09211 DUF1958: Domain of un 26.2 23 0.0005 27.2 0.1 17 194-210 3-19 (65)
19 KOG4806 Uncharacterized conser 25.5 50 0.0011 33.2 2.2 130 110-249 120-279 (454)
20 TIGR02811 formate_TAT formate 24.9 30 0.00064 26.1 0.5 15 49-63 6-21 (66)
21 PF12318 FAD-SLDH: Membrane bo 21.6 35 0.00076 29.5 0.3 17 51-67 1-19 (168)
22 COG4041 Predicted membrane pro 20.4 59 0.0013 28.9 1.5 15 240-256 57-71 (171)
No 1
>PLN00059 PsbP domain-containing protein 1; Provisional
Probab=99.80 E-value=4.8e-20 Score=168.69 Aligned_cols=198 Identities=15% Similarity=0.180 Sum_probs=125.1
Q ss_pred ccccccCCCccccccccccCCCcccccccccCCccccCcccchhhhhhhhh--hhcccccCCCCCCccccccccceeccc
Q 025103 13 LHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVLFGLS--SSLSLGFPTPGSVAGEDVKMASFVDEI 90 (258)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ss~~~~~~~~RR~lll~Gl~--a~~a~l~p~s~a~AeE~~k~~~vvD~~ 90 (258)
..+-||-+.+.-+...+.+-+..-++-+|- ...+.--.+.||.++++|+. ..++.....+.++|+ .++|+.++|.+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~rr~~~~~~l~~~~~~~s~~~~~~a~a~-~~~l~~y~D~~ 116 (286)
T PLN00059 39 LLFSRPISSGPKHQSAKSAKPDSPVAINCL-TDAKQVCAVGRRKSMMMGLLMSGLIVSEANLPTAFAS-IPVFREYIDTF 116 (286)
T ss_pred hhccccccCCcccccccccCCCCCeeeecc-cchhhhhhhhhhhhhHHHHHHHHHHHHhhcCchhhcC-CcccceeEcCC
Confidence 444566555554444444433333333342 22234456889999998884 333455555577776 55899999999
Q ss_pred cceeEeecccCCCcccccceeeccCcccccCCCCCCcccceeeeeeeeecccce-eEEEEecCCCccccccCCCCC-CCh
Q 025103 91 NAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNL-IISVTIGPPNVQFLKSKDKST-WNA 168 (258)
Q Consensus 91 ~aYSF~YP~~~~~~~~~f~w~eSr~perYSSAaPLspdaRqRIVsEr~Di~d~l-~iSVtiGPp~~~~l~~kd~~~-w~a 168 (258)
+||+|+||.+| .++...++ .+|.- |+|+.. ++||.|.|+++. +.++..+ .+|
T Consensus 117 DGY~FlYP~GW--i~V~~~G~--------------------DVvFr--D~Ie~~ENVSV~ISs~sss--~~~sLeDLGsP 170 (286)
T PLN00059 117 DGYSFKYPQNW--IQVRGAGA--------------------DIFFR--DPVVLDENLSVEFSSPSSS--KYTSLEDLGSP 170 (286)
T ss_pred CCeEEeCCCCC--eEeccCCC--------------------ceEEe--ccCccccceEEEEecCCcc--cCCChHHcCCH
Confidence 99999999866 44433444 45544 555555 667777776631 3467777 488
Q ss_pred HHHHHHHhhcccc----cccCCCccccchhhhhcccccc-CCccceeEEeeec-cc----c--cc----hhhhhhhhhcc
Q 025103 169 KDVADSVLSDKSA----LRVTSSQRMAESSVLDAHTSKV-DGSGTKPLSTLCC-FN----R--RA----RRLSLFYKCFN 232 (258)
Q Consensus 169 k~VA~~VLadkst----~rvt~gQr~~~ssV~dA~~~~i-DG~~Yy~yEyi~Q-pN----~--~~----~~~~~fr~~~~ 232 (258)
++||+.|+..-.+ -|.-.|+. .+|++|.+++. ||+.||.|||..+ |+ | +. ..++-.||.+.
T Consensus 171 ~eVgerLlkqvLa~f~str~GsgRe---aeLVsA~~Re~~DGktYY~lEY~Vks~~~~n~~~~~~qdr~~~~~w~RH~LA 247 (286)
T PLN00059 171 EEVGKRVLRQYLTEFMSTRLGVKRE---ANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLA 247 (286)
T ss_pred HHHHHHHHHHHhcccccccCCCCcc---eEEEEeeeEEccCCcEEEEEEEEEEcCcccccccccccccccccccceeeEE
Confidence 9998887753222 24445665 58899998866 9999999999988 62 1 11 11334688877
Q ss_pred cceeeccccee
Q 025103 233 ARQAVGRDGTF 243 (258)
Q Consensus 233 ~~~~~~~~~~~ 243 (258)
+ .+-++|.|
T Consensus 248 ~--v~V~nGkL 256 (286)
T PLN00059 248 V--LGVENDRL 256 (286)
T ss_pred E--EEEeCCEE
Confidence 7 44455554
No 2
>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional
Probab=99.77 E-value=3.4e-19 Score=161.78 Aligned_cols=161 Identities=17% Similarity=0.202 Sum_probs=110.4
Q ss_pred cCcccchhhhhhhhhhhc--ccccCCCCCCcccc---------ccccceeccccceeEeecccC-CCcccccceeeccCc
Q 025103 49 QNGFCRRDLVLFGLSSSL--SLGFPTPGSVAGED---------VKMASFVDEINAYTYLYPMEL-PSKKFLFKWVESRKP 116 (258)
Q Consensus 49 ~~~~~RR~lll~Gl~a~~--a~l~p~s~a~AeE~---------~k~~~vvD~~~aYSF~YP~~~-~~~~~~f~w~eSr~p 116 (258)
...+.||..|++++++++ +-+.|+..+++|+. .+|.++.| |||+|+||.+| |+++..|.|++.+|+
T Consensus 47 ~~~~srr~~l~~~~ga~a~~~~~~pa~aay~~~anvfg~~k~~~gF~~y~~--dgY~FlyP~~W~~~ke~~~~G~dv~f~ 124 (260)
T PLN00042 47 NSAVSRRAALALLAGAAAAGAKVSPANAAYGESANVFGKPKTNTGFLPYNG--DGFKLLVPSKWNPSKEREFPGQVLRFE 124 (260)
T ss_pred cccccHHHHHHHHHHHHHhhcccCchhhhhcchhhccCCCCCCCCCeEeeC--CCeEEecCCCCccccccccCCceEEee
Confidence 345789988887777544 67888888888772 37777865 99999999999 455777788877777
Q ss_pred ccccCCCCCCcccceeeeeeeeecccceeEEEEecCCCccccccCCCCCC-ChHHHHHHH--------hhcc--cccccC
Q 025103 117 ERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTW-NAKDVADSV--------LSDK--SALRVT 185 (258)
Q Consensus 117 erYSSAaPLspdaRqRIVsEr~Di~d~l~iSVtiGPp~~~~l~~kd~~~w-~ak~VA~~V--------Ladk--st~rvt 185 (258)
|.+. ++ + ++||.|-|+++ +++.+. +|+++++.| ++.+ +-..-.
T Consensus 125 D~~~---~~----------------e--NVSV~Ispt~k-----~sI~dlGsPee~l~~vgylL~kq~~a~~t~s~~Gf~ 178 (260)
T PLN00042 125 DNFD---AT----------------S--NLSVMVTPTDK-----KSITDYGSPEEFLSKVSYLLGKQAYSGETASEGGFD 178 (260)
T ss_pred cccc---cc----------------c--cEEEEEecCCc-----CCHhhcCCHHHHHHHHHHHHHhhhccCccccccCcC
Confidence 7663 22 2 34455666653 566774 777876553 3432 111122
Q ss_pred CCccccchhhhhccccccCCccceeEEeeec-ccccchhhhhhhhhcccceeecccceee
Q 025103 186 SSQRMAESSVLDAHTSKVDGSGTKPLSTLCC-FNRRARRLSLFYKCFNARQAVGRDGTFL 244 (258)
Q Consensus 186 ~gQr~~~ssV~dA~~~~iDG~~Yy~yEyi~Q-pN~~~~~~~~fr~~~~~~~~~~~~~~~~ 244 (258)
|+|.. ..+|+||.++++||++||.|||..+ ||.. +..||.|-+ +.-.+|.|.
T Consensus 179 p~~va-ta~Lleas~re~dGk~YY~lE~~~~~ad~d----~~~RH~Lat--atV~~GkLY 231 (260)
T PLN00042 179 ANAVA-TAAVLESSTQEVGGKPYYYLSVLTRTADGD----EGGKHQLIT--ATVSDGKLY 231 (260)
T ss_pred ccccc-ceeEEEeeeEEeCCeEEEEEEEEEecCCCC----CCCceEEEE--EEEECCEEE
Confidence 55542 2478999999999999999999999 8632 223888877 556777764
No 3
>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.
Probab=99.66 E-value=6.9e-17 Score=134.48 Aligned_cols=125 Identities=19% Similarity=0.234 Sum_probs=89.5
Q ss_pred cccccceeccccceeEeecccCCCcccccceeeccCcccccCCCCCCcccceeeeeeeeecccce-eEEEEecCCCcccc
Q 025103 80 DVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNL-IISVTIGPPNVQFL 158 (258)
Q Consensus 80 ~~k~~~vvD~~~aYSF~YP~~~~~~~~~f~w~eSr~perYSSAaPLspdaRqRIVsEr~Di~d~l-~iSVtiGPp~~~~l 158 (258)
..+|.++.|..+||+|.||.+| .+....+ +.++.+ |.++.. +++|.|.|..+.
T Consensus 20 ~~~~~~y~d~~~~y~f~~P~gW--~~~~~~G--------------------~~v~f~--d~~~~~~nvsV~v~p~~~~-- 73 (175)
T PF01789_consen 20 STGFQPYTDSDDGYSFLYPSGW--EEVDVSG--------------------ADVVFR--DPIDADENVSVVVSPVPKD-- 73 (175)
T ss_dssp -SSEEEEEECTTTEEEEEETTE--EEEESTT--------------------EEEEEE--ETTETTSEEEEEEEE-STS--
T ss_pred CCCceEEEcCCCCEEEECCCCC--eecCCCC--------------------eEEEEE--CcccccceEEEEEEecCCc--
Confidence 4599999999999999999877 3333333 244433 555444 788889888864
Q ss_pred ccCCCCC-CChHHHHHHHhhcccccccCCCccccchhhhhccccccCCccceeEEeeec-ccccchhhhhhhhhccccee
Q 025103 159 KSKDKST-WNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGSGTKPLSTLCC-FNRRARRLSLFYKCFNARQA 236 (258)
Q Consensus 159 ~~kd~~~-w~ak~VA~~VLadkst~rvt~gQr~~~ssV~dA~~~~iDG~~Yy~yEyi~Q-pN~~~~~~~~fr~~~~~~~~ 236 (258)
+++.+ ++|++||+.++...... -..+ ...++++|.++++||++||+|||.++ |+ +..||.+-+ +
T Consensus 74 --~sl~~lGs~~~va~~l~~~~~~~-~~~~---~~a~li~a~~~~~~g~~yY~~Ey~~~~~~------~~~rh~l~~--~ 139 (175)
T PF01789_consen 74 --FSLEDLGSPEEVAERLLNGELAS-PGSG---REAELISASEREVDGKTYYEYEYTVQSPN------EGRRHNLAV--V 139 (175)
T ss_dssp ---SGGGG-SHHHHHHHHHHHCCCH-CTSS---EEEEEEEEEEEEETTEEEEEEEEEEEETT------EEEEEEEEE--E
T ss_pred --CchhhcCCHHHHHHHHhhhhccc-ccCC---cceEEEEeeeeecCCccEEEEEEEeccCC------CcccEEEEE--E
Confidence 26667 59999999998753221 1111 34688999999999999999999999 88 335888887 6
Q ss_pred ecccceee
Q 025103 237 VGRDGTFL 244 (258)
Q Consensus 237 ~~~~~~~~ 244 (258)
.-++|+|.
T Consensus 140 tv~~g~lY 147 (175)
T PF01789_consen 140 TVKNGKLY 147 (175)
T ss_dssp EEETTEEE
T ss_pred EEECCEEE
Confidence 66788764
No 4
>PLN00067 PsbP domain-containing protein 6; Provisional
Probab=99.50 E-value=2.7e-14 Score=130.27 Aligned_cols=116 Identities=12% Similarity=0.127 Sum_probs=79.2
Q ss_pred ccccceeEeecccCCCccccc---------------ceeeccCcccccCCCCCCcccceeeeeeeeecccceeEEEEecC
Q 025103 88 DEINAYTYLYPMELPSKKFLF---------------KWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGP 152 (258)
Q Consensus 88 D~~~aYSF~YP~~~~~~~~~f---------------~w~eSr~perYSSAaPLspdaRqRIVsEr~Di~d~l~iSVtiGP 152 (258)
+++-||+|+||-+| ++..+ .|+|.+|.| ..-+ ++||-|-|
T Consensus 102 ~~i~gY~FlyP~gW--~~v~Vs~~~sGnycqp~c~~p~~dv~F~D---------------------~~dg--nVSVIVSP 156 (263)
T PLN00067 102 GNVQPYQFILPPTW--KQTRVANILSGNYCQPKCAEPWVEVKFED---------------------EKQG--KVQVVASP 156 (263)
T ss_pred CCcccceEeCCCCC--cCccccccccCccccccccCCCceEEEeC---------------------CCCC--CEEEEEec
Confidence 57889999999988 33332 245444433 1223 44444445
Q ss_pred CCccc--cccCCCCC-CChHHHHHHHhhcccccccCCCccccchhhhhccccccCCccceeEEeeec-ccccchhhhhhh
Q 025103 153 PNVQF--LKSKDKST-WNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGSGTKPLSTLCC-FNRRARRLSLFY 228 (258)
Q Consensus 153 p~~~~--l~~kd~~~-w~ak~VA~~VLadkst~rvt~gQr~~~ssV~dA~~~~iDG~~Yy~yEyi~Q-pN~~~~~~~~fr 228 (258)
... + ...+++.+ .+|++|.+.|-.. .++ .++|. .+|+||.++++||+.||.|||..+ +++. |
T Consensus 157 V~r-~t~k~~~sIeDlGsPeeVl~~Lg~~-v~g--~~~~~---~eLLeAs~re~dGktYY~~E~~tp~a~~g-------R 222 (263)
T PLN00067 157 LIR-LTNKPNATIEEIGSPEKLIASLGPF-VTG--NSYDP---DELLETSVEKIGDQTYYKYVLETPFALTG-------S 222 (263)
T ss_pred ccc-cccCCCCChHHccCHHHHHHHhhHH-hhc--CCCCC---cceEEeeeEeeCCeEEEEEEEEecCCCCC-------c
Confidence 321 1 13456777 4999999997553 333 35566 478999999999999999999999 8866 8
Q ss_pred hhcccceeecccceee
Q 025103 229 KCFNARQAVGRDGTFL 244 (258)
Q Consensus 229 ~~~~~~~~~~~~~~~~ 244 (258)
|.|-+ ++-++|++.
T Consensus 223 HnLat--aTV~~GkLY 236 (263)
T PLN00067 223 HNLAK--ATAKGNTVV 236 (263)
T ss_pred eEEEE--EEEECCEEE
Confidence 88877 677888764
No 5
>PLN00066 PsbP domain-containing protein 4; Provisional
Probab=98.98 E-value=6.8e-10 Score=101.50 Aligned_cols=118 Identities=13% Similarity=0.136 Sum_probs=70.7
Q ss_pred ccccceeEeecccCCCcccccceeeccCcccccCCCCCCcccceeeeeeeeecccceeEEEEecCCCc---cccccCCCC
Q 025103 88 DEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNV---QFLKSKDKS 164 (258)
Q Consensus 88 D~~~aYSF~YP~~~~~~~~~f~w~eSr~perYSSAaPLspdaRqRIVsEr~Di~d~l~iSVtiGPp~~---~~l~~kd~~ 164 (258)
-++..|+|.||.+| ++..+.-+|.-- ++.-.|++.+ -.++ ++|-|-|.+. .+...+++.
T Consensus 110 ~~i~~Y~F~yP~GW--~ev~VS~~d~gg-----------~~vd~Rf~~~---~~~n--vsVvVspv~rla~~~~~~~sI~ 171 (262)
T PLN00066 110 SEITPYSFKVPQGW--EEVPVSIADLGG-----------TEIDLRFASD---KEGR--LKVVVAPVLRFADNLGDNATIE 171 (262)
T ss_pred cccCCeEEECCCCC--eEeecccccCCC-----------CceEEEeccC---CCcc--EEEEEeccccccccccCCCChH
Confidence 45678999999988 555554332221 1222233321 1222 3455555541 112345666
Q ss_pred C-CChHHHHHHHhhcccccccCCCccccchhhhhccccccCCccceeEEeeecccccchhhhhhhhhcccceeeccccee
Q 025103 165 T-WNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGSGTKPLSTLCCFNRRARRLSLFYKCFNARQAVGRDGTF 243 (258)
Q Consensus 165 ~-w~ak~VA~~VLadkst~rvt~gQr~~~ssV~dA~~~~iDG~~Yy~yEyi~QpN~~~~~~~~fr~~~~~~~~~~~~~~~ 243 (258)
+ .+|++|++.+... ..+ .+.| +.+|++|.+.+.||+.||.||| . ||.|-+ +.-.+|.|
T Consensus 172 dLGspeeVi~~l~~~-v~g--~~~~---e~eLl~a~~re~dGktYY~~E~------~-------rH~Las--aTV~~GrL 230 (262)
T PLN00066 172 EIGPPEKVISGFGPE-LIG--EPVE---EGKVLSMEVAEHSGRTYYQFEL------P-------PHTLVT--ATAAGNRV 230 (262)
T ss_pred HcCCHHHHHHHHHHH-hcC--CCcc---ccceeEeeeeecCCcEEEEEEE------e-------CceEEE--EEEECCEE
Confidence 7 4899999887653 222 1333 3689999999999999999999 1 676666 33456666
Q ss_pred e
Q 025103 244 L 244 (258)
Q Consensus 244 ~ 244 (258)
.
T Consensus 231 Y 231 (262)
T PLN00066 231 Y 231 (262)
T ss_pred E
Confidence 4
No 6
>PLN03152 hypothetical protein; Provisional
Probab=98.81 E-value=3.3e-08 Score=89.73 Aligned_cols=161 Identities=21% Similarity=0.259 Sum_probs=98.1
Q ss_pred chhhhhhhhh---hhcccccCCCCCCccccccccceecc-----------ccceeEeecccCCCcccccceeeccCcccc
Q 025103 54 RRDLVLFGLS---SSLSLGFPTPGSVAGEDVKMASFVDE-----------INAYTYLYPMELPSKKFLFKWVESRKPERY 119 (258)
Q Consensus 54 RR~lll~Gl~---a~~a~l~p~s~a~AeE~~k~~~vvD~-----------~~aYSF~YP~~~~~~~~~f~w~eSr~perY 119 (258)
||++++--.. .+++.-.|..+++|+..+.-.++.-. -+|++--||- ...|--.||+|
T Consensus 33 ~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nt~~w~~~~g~gf~~~~pp---------~f~di~e~~~~ 103 (241)
T PLN03152 33 RRDFILHTASLCASSLAAQNPLPPSLADPSKPSKPLLSGIANTKSWFQFYGDGFSIRVPP---------SFEDIMEPEDY 103 (241)
T ss_pred ccceeeehhHHHHhhhhcCCCCCccccCCCCCCCchheeeecchhhhhhhCCceEEeCCC---------ChhhhcChhhc
Confidence 7888774332 33344556667777664444443322 3577777874 23466788999
Q ss_pred cCCCCCC-cccceeeeeeeeecccce-eEEEEecCCC---ccccccCCCCC-CChHHHHHHHhhcccccccCCCccccch
Q 025103 120 SSAAPLS-PNARLRIVSERVDIIDNL-IISVTIGPPN---VQFLKSKDKST-WNAKDVADSVLSDKSALRVTSSQRMAES 193 (258)
Q Consensus 120 SSAaPLs-pdaRqRIVsEr~Di~d~l-~iSVtiGPp~---~~~l~~kd~~~-w~ak~VA~~VLadkst~rvt~gQr~~~s 193 (258)
++..-|= +-|.-|-+--|++=-|.. ++||.|-|.+ -.||..||+.| .+++||+ .++++ +|++.--.
T Consensus 104 ~~g~~~yg~~akp~~~~aRf~s~D~sEnVSVVIspv~~LK~tfle~kDLtDLGsp~EVg-kv~vP-------~g~~~~sa 175 (241)
T PLN03152 104 NAGLSLYGDKAKPRTFAARFASPDGSEVLSVVIRPSNQLKITFLEAKDITDLGSLKEAA-KIFVP-------GGATLYSA 175 (241)
T ss_pred ccccceecCCCCCcceeeeecCCCCCceEEEEEecCccccccccccCChhHcCCHHHHH-HhhCC-------Cccccccc
Confidence 7543332 122223333344333333 6788888876 33567799999 5999999 55554 55433222
Q ss_pred hhhhccccccCCccceeEEeeecccccchhhhhhhhhcccceeecccceee
Q 025103 194 SVLDAHTSKVDGSGTKPLSTLCCFNRRARRLSLFYKCFNARQAVGRDGTFL 244 (258)
Q Consensus 194 sV~dA~~~~iDG~~Yy~yEyi~QpN~~~~~~~~fr~~~~~~~~~~~~~~~~ 244 (258)
.+++.+ +++||+.||.|||... . ||.+.+ ++-.+|.|.
T Consensus 176 R~iel~-~E~dGKtYY~lEy~v~---~-------RH~LaT--VaVsrGKLY 213 (241)
T PLN03152 176 RTIKVK-EEEGIRTYYFYEFGRD---E-------QHVALV--ATVNSGKAY 213 (241)
T ss_pred ceeeee-eecCCceeEEEEEEeC---C-------cEEEEE--EEEcCCeEE
Confidence 334553 4999999999999985 3 777776 555666653
No 7
>PLN00059 PsbP domain-containing protein 1; Provisional
Probab=88.81 E-value=0.56 Score=44.47 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=31.4
Q ss_pred cccccCCCCCCcccceeee--e--eeeecccceeEEEEecCCCccccccCCCCCCChHHHHHHHhhc
Q 025103 116 PERYSSAAPLSPNARLRIV--S--ERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSD 178 (258)
Q Consensus 116 perYSSAaPLspdaRqRIV--s--Er~Di~d~l~iSVtiGPp~~~~l~~kd~~~w~ak~VA~~VLad 178 (258)
+|.+. +.+ |+.+.|. + +..|+.| +|||..+ ++.|.+.+|+.
T Consensus 140 rD~Ie---~~E-NVSV~ISs~sss~~~sLeD-------LGsP~eV-----------gerLlkqvLa~ 184 (286)
T PLN00059 140 RDPVV---LDE-NLSVEFSSPSSSKYTSLED-------LGSPEEV-----------GKRVLRQYLTE 184 (286)
T ss_pred eccCc---ccc-ceEEEEecCCcccCCChHH-------cCCHHHH-----------HHHHHHHHhcc
Confidence 45564 444 6667776 2 5789999 9999987 89999999985
No 8
>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional
Probab=77.41 E-value=3.5 Score=38.76 Aligned_cols=47 Identities=17% Similarity=0.340 Sum_probs=25.4
Q ss_pred eeeeecccceeEEEEecCCCccc-----------cccCCC--CCCChHHHHHHHhhcccccccCCCcc
Q 025103 135 SERVDIIDNLIISVTIGPPNVQF-----------LKSKDK--STWNAKDVADSVLSDKSALRVTSSQR 189 (258)
Q Consensus 135 sEr~Di~d~l~iSVtiGPp~~~~-----------l~~kd~--~~w~ak~VA~~VLadkst~rvt~gQr 189 (258)
.++.||.| +|+|+..+ +..+.. ....+..||.+-|-+ +..|..-||.
T Consensus 140 t~k~sI~d-------lGsPee~l~~vgylL~kq~~a~~t~s~~Gf~p~~vata~Lle-as~re~dGk~ 199 (260)
T PLN00042 140 TDKKSITD-------YGSPEEFLSKVSYLLGKQAYSGETASEGGFDANAVATAAVLE-SSTQEVGGKP 199 (260)
T ss_pred CCcCCHhh-------cCCHHHHHHHHHHHHHhhhccCccccccCcCcccccceeEEE-eeeEEeCCeE
Confidence 45678999 99998721 111211 224566676664444 2345555543
No 9
>PLN00064 photosystem II protein Psb27; Provisional
Probab=44.17 E-value=9.7 Score=33.91 Aligned_cols=39 Identities=18% Similarity=0.288 Sum_probs=27.2
Q ss_pred CccccCcccchhhhhhhhhhhc-ccccCCCCCCccccccc
Q 025103 45 KPIQQNGFCRRDLVLFGLSSSL-SLGFPTPGSVAGEDVKM 83 (258)
Q Consensus 45 s~~~~~~~~RR~lll~Gl~a~~-a~l~p~s~a~AeE~~k~ 83 (258)
-+-.++...||++|..|.++.. ++++|..+++|+.+..|
T Consensus 27 ~~~~~~~~~rr~~~~~~~~~~~~~~~~~~~~a~a~~~g~Y 66 (166)
T PLN00064 27 PPPRRNHLLRREFLSLATTILTSAALLPVAPAFAASDEEY 66 (166)
T ss_pred CchhhhhhHHHHHHHHHHHHHHHHHhccCcchhhccCCCh
Confidence 3345666789999998766444 47888888888655444
No 10
>PF09860 DUF2087: Uncharacterized protein conserved in bacteria (DUF2087); InterPro: IPR018656 This domain, found in various hypothetical prokaryotic proteins and transcriptional activators, has no known function.
Probab=40.61 E-value=16 Score=27.85 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=19.5
Q ss_pred CCChHHHHHHHhhcccccccCCCccccchhhhh
Q 025103 165 TWNAKDVADSVLSDKSALRVTSSQRMAESSVLD 197 (258)
Q Consensus 165 ~w~ak~VA~~VLadkst~rvt~gQr~~~ssV~d 197 (258)
.|+.++-...++-...+.+..+|+..+|.+|-+
T Consensus 5 ~~P~k~~~r~~iL~~l~~~f~~g~~y~E~EVN~ 37 (71)
T PF09860_consen 5 RWPSKRKKRLVILEYLASRFEPGREYSEKEVNE 37 (71)
T ss_pred ccCccHHHHHHHHHHHHHhCCCCCccCHHHHHH
Confidence 454444444433334444667999998888744
No 11
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=40.47 E-value=47 Score=28.98 Aligned_cols=87 Identities=16% Similarity=0.230 Sum_probs=64.2
Q ss_pred EEecCCCccccccCCCCCCChHHHHHHHhhcccccccCCCccccchhhhhccccccCCccceeEEeeec-ccccchhhhh
Q 025103 148 VTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGSGTKPLSTLCC-FNRRARRLSL 226 (258)
Q Consensus 148 VtiGPp~~~~l~~kd~~~w~ak~VA~~VLadkst~rvt~gQr~~~ssV~dA~~~~iDG~~Yy~yEyi~Q-pN~~~~~~~~ 226 (258)
++|.|++++ -+--+-++..+.+....--+=|-++|- . =-+|..++.+|-+.=|.-.|--. =-.+-|+.-+
T Consensus 49 l~i~pasGr------rkLspt~emi~~l~~geIel~VLttqp-D--Iai~l~~kVldnEnRYViDFD~RGvkwTMRdipV 119 (144)
T PF10657_consen 49 LTISPASGR------RKLSPTPEMIDKLISGEIELFVLTTQP-D--IAINLQQKVLDNENRYVIDFDKRGVKWTMRDIPV 119 (144)
T ss_pred EEEecCCCc------cccCCcHHHHHHHhcCceEEEEEccCC-C--eeechhhhhhcccceEEEeccCCcceeEeecCce
Confidence 347788765 122245677777776665555556654 1 12688999999999999999888 6899999999
Q ss_pred hhhhcccceeeccccee
Q 025103 227 FYKCFNARQAVGRDGTF 243 (258)
Q Consensus 227 fr~~~~~~~~~~~~~~~ 243 (258)
|++.++-.-.|+-||..
T Consensus 120 fy~~~~~~l~Veid~r~ 136 (144)
T PF10657_consen 120 FYNSLTRQLCVEIDRRT 136 (144)
T ss_pred EEccCCcEEEEEECCeE
Confidence 99999887888888754
No 12
>PF11216 DUF3012: Protein of unknown function (DUF3012); InterPro: IPR021379 This family of proteins with unknown function is restricted to Gammaproteobacteria.
Probab=38.96 E-value=18 Score=24.57 Aligned_cols=16 Identities=44% Similarity=0.835 Sum_probs=13.1
Q ss_pred cccCCCCCCChHHHHH
Q 025103 158 LKSKDKSTWNAKDVAD 173 (258)
Q Consensus 158 l~~kd~~~w~ak~VA~ 173 (258)
++.|+|.+|++.|.++
T Consensus 10 m~~kpK~dWtanea~~ 25 (32)
T PF11216_consen 10 MKEKPKGDWTANEAAD 25 (32)
T ss_pred HhhCCcccCcHhHHHH
Confidence 4668999999988765
No 13
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=33.60 E-value=15 Score=23.05 Aligned_cols=20 Identities=15% Similarity=0.288 Sum_probs=15.0
Q ss_pred ccchhhhhhhhhhhcccccC
Q 025103 52 FCRRDLVLFGLSSSLSLGFP 71 (258)
Q Consensus 52 ~~RR~lll~Gl~a~~a~l~p 71 (258)
++||++|-.++++.++.+++
T Consensus 2 ~sRR~fLk~~~a~~a~~~~~ 21 (26)
T PF10518_consen 2 LSRRQFLKGGAAAAAAAALG 21 (26)
T ss_pred CcHHHHHHHHHHHHHHHHhc
Confidence 57999999888766665555
No 14
>PF11548 Receptor_IA-2: Protein-tyrosine phosphatase receptor IA-2; InterPro: IPR021613 IA-2 is a protein-tyrosine phosphatase receptor that upon exocytosis, the cytoplasmic domain is cleaved and moves to the nucleus where it enhances transcription of the insulin gene. The mature exodomain of IA-2 participates in adhesion to the extracellular matrix and is self-proteolyzed in vitro by reactive oxygen species which may be a new shedding mechanism. ; PDB: 2QT7_B 3N01_B 3N4W_B 3NG8_A.
Probab=30.84 E-value=7.2 Score=31.59 Aligned_cols=66 Identities=23% Similarity=0.358 Sum_probs=39.7
Q ss_pred CCCCcccceeee---eeeeecccceeEEEEecCCCccccccCCCCCCChHHHHHHHhhcccccccCCCc
Q 025103 123 APLSPNARLRIV---SERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQ 188 (258)
Q Consensus 123 aPLspdaRqRIV---sEr~Di~d~l~iSVtiGPp~~~~l~~kd~~~w~ak~VA~~VLadkst~rvt~gQ 188 (258)
.||+++...+++ .|++++.-..-+.++|.+|.-.|--..+.+.+++-|||+....-|..+.-.+|=
T Consensus 12 d~ls~~~G~~l~~~la~~l~l~s~~F~~i~V~g~avTFrv~~N~~n~taadVa~~a~~~K~~Le~~tG~ 80 (91)
T PF11548_consen 12 DPLSWDEGSRLMEKLAELLHLPSSSFINISVVGPAVTFRVRPNNKNLTAADVAKQAVDNKNQLEKETGL 80 (91)
T ss_dssp TT--HHHHHHHHHHHHHHHTS-GGGEEEEEEETTEEEEEE---TT---HHHHHHHHHHTHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHHHHHhCCCcccceeeeecCceEEEEeccCcCCCCHHHHHHHHHHhHHHHHHhhCc
Confidence 367777777777 455555445556677777776776677778899999999988877766555553
No 15
>PF08379 Bact_transglu_N: Bacterial transglutaminase-like N-terminal region; InterPro: IPR013589 This region is found towards the N terminus of various archaeal and bacterial hypothetical proteins. Some of these are annotated as being transglutaminase-like proteins, and in fact contain a transglutaminase-like superfamily domain (IPR002931 from INTERPRO).
Probab=30.63 E-value=89 Score=23.01 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=12.8
Q ss_pred eeeecccceeEEEEecCCCc
Q 025103 136 ERVDIIDNLIISVTIGPPNV 155 (258)
Q Consensus 136 Er~Di~d~l~iSVtiGPp~~ 155 (258)
+..|+-+|.+..+.+-.|-.
T Consensus 51 ~~~D~fGN~v~~~~~~~ph~ 70 (82)
T PF08379_consen 51 EYTDFFGNRVHRFSFPEPHK 70 (82)
T ss_pred EEECCCCCEEEEEEECCCce
Confidence 34477777777777765443
No 16
>COG4740 Predicted metalloprotease [General function prediction only]
Probab=30.60 E-value=31 Score=30.89 Aligned_cols=15 Identities=7% Similarity=0.029 Sum_probs=13.0
Q ss_pred cccCCccceeEEeee
Q 025103 201 SKVDGSGTKPLSTLC 215 (258)
Q Consensus 201 ~~iDG~~Yy~yEyi~ 215 (258)
.++.|.|.|.|||+-
T Consensus 160 ~e~kGtp~weFEye~ 174 (176)
T COG4740 160 DELKGTPVWEFEYEK 174 (176)
T ss_pred CCcCCCcceEEEEEe
Confidence 567899999999974
No 17
>PLN02999 photosystem II oxygen-evolving enhancer 3 protein (PsbQ)
Probab=29.07 E-value=27 Score=31.75 Aligned_cols=39 Identities=26% Similarity=0.261 Sum_probs=24.3
Q ss_pred ccCcccchhhhhhhhhhhcccccCCCCCCcccccccccee
Q 025103 48 QQNGFCRRDLVLFGLSSSLSLGFPTPGSVAGEDVKMASFV 87 (258)
Q Consensus 48 ~~~~~~RR~lll~Gl~a~~a~l~p~s~a~AeE~~k~~~vv 87 (258)
.++-.+||.++..-++.++..+.. +++.+.|+-|-.+|+
T Consensus 37 ~~~~~~rr~~~~~~l~~~~~~~~~-~~~~~~e~~GtRsfL 75 (190)
T PLN02999 37 QQDIFTRRRTLTSLITFTVIGGAT-SSALAQEKWGTRSFI 75 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhcc-CcHHHHhhhhhHHHH
Confidence 666678888887666666654444 455555555555554
No 18
>PF09211 DUF1958: Domain of unknown function (DUF1958); InterPro: IPR015294 Penicillin-binding proteins are beta-lactam antibiotic-sensitive bacterial enzymes required for the growth and maintenance of the peptidoglycan layer of the bacterial cell wall that protects the cell from osmotic stress. Penicillin-binding protein 4 (PBP4) functions as a transpeptidase, and belongs to MEROPS peptidase family S11 (clan SE). PBP4 acts co-operatively with PBP2 in staphylococcal cell wall biosynthesis and susceptibility to antimicrobial agents []. This entry represents the C-terminal domain PBP4.; PDB: 1TVF_A 3HUN_A 3HUM_B.
Probab=26.20 E-value=23 Score=27.15 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=14.1
Q ss_pred hhhhccccccCCcccee
Q 025103 194 SVLDAHTSKVDGSGTKP 210 (258)
Q Consensus 194 sV~dA~~~~iDG~~Yy~ 210 (258)
+|+.+-+.+|||+.|+.
T Consensus 3 KvLskG~h~IdGk~y~v 19 (65)
T PF09211_consen 3 KVLSKGEHTIDGKKYYV 19 (65)
T ss_dssp EEE-SEEEEETTEEEEE
T ss_pred ccccCccEEECCEEEEe
Confidence 57899999999999974
No 19
>KOG4806 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.49 E-value=50 Score=33.24 Aligned_cols=130 Identities=22% Similarity=0.213 Sum_probs=67.9
Q ss_pred eeeccCcccccCCCCCCccc----ceeeeeee---e----ecccceeEEEEecCCCccccccCCCCC--CChHHHHHHHh
Q 025103 110 WVESRKPERYSSAAPLSPNA----RLRIVSER---V----DIIDNLIISVTIGPPNVQFLKSKDKST--WNAKDVADSVL 176 (258)
Q Consensus 110 w~eSr~perYSSAaPLspda----RqRIVsEr---~----Di~d~l~iSVtiGPp~~~~l~~kd~~~--w~ak~VA~~VL 176 (258)
=.-||+||.. ||||.. |.|||+.+ + |-++++ .-+-||..+... -+.=+.+ +-..--+-..=
T Consensus 120 ~s~sa~~d~~----~mSP~~~~~Gr~~~I~sr~P~~~~~~~~iq~~-~iiCig~~n~~~-v~~L~pdt~Y~~dvFvv~~~ 193 (454)
T KOG4806|consen 120 RSFSAKPDQQ----PMSPKLAAGGRHEGIYSRPPKVDRRLNPIQKV-HIICIGNKNIFT-VSDLKPDTQYYFDVFVVNIN 193 (454)
T ss_pred ceeeccCCcC----CCChhhhcCCceeeeecCCccccccccchhce-eEEEcCCccEEE-hhhcCCCceEEEEEEEEecC
Confidence 3457888866 899987 78888655 2 445553 346688888432 1111100 00000000111
Q ss_pred hcccccccCCCccccchhhhhcccc---------------ccCCccceeEEeeec-ccccchhhhhhhhhcc-cceeecc
Q 025103 177 SDKSALRVTSSQRMAESSVLDAHTS---------------KVDGSGTKPLSTLCC-FNRRARRLSLFYKCFN-ARQAVGR 239 (258)
Q Consensus 177 adkst~rvt~gQr~~~ssV~dA~~~---------------~iDG~~Yy~yEyi~Q-pN~~~~~~~~fr~~~~-~~~~~~~ 239 (258)
..-+|+++.+.|+..+ +++.+ -.-|..+|.|--=-. -|++....-...-|.| +|--+-|
T Consensus 194 r~~sTay~~t~~~t~e----~~kQk~~~Lk~g~l~qv~v~~~kG~kf~~f~~pq~~~~l~qp~mhllh~C~g~vrinl~R 269 (454)
T KOG4806|consen 194 RNMSTAYVGTFARTKE----EAKQKTVELKDGKLTQVFVKGRKGAKFLSFKVPQTTRSLGQPFMHLLHSCLGEVRINLLR 269 (454)
T ss_pred CCcceeeeeeehhhhh----hhcCCceeeccCcEEEEEecccccceEEEecCcchhhhcCCceeeeeecccccceeehhh
Confidence 2347888888888655 23222 124556665542111 3455444433444555 3455678
Q ss_pred cceeeeeeee
Q 025103 240 DGTFLGKICC 249 (258)
Q Consensus 240 ~~~~~~~~~~ 249 (258)
+|..|||--.
T Consensus 270 ~rkel~kS~a 279 (454)
T KOG4806|consen 270 QRKELGKSEA 279 (454)
T ss_pred chhhhccccc
Confidence 8888886433
No 20
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=24.91 E-value=30 Score=26.13 Aligned_cols=15 Identities=33% Similarity=0.583 Sum_probs=10.0
Q ss_pred cCcccchhhhh-hhhh
Q 025103 49 QNGFCRRDLVL-FGLS 63 (258)
Q Consensus 49 ~~~~~RR~lll-~Gl~ 63 (258)
+....||++|. +|++
T Consensus 6 ~~~~sRR~Flk~lg~~ 21 (66)
T TIGR02811 6 KADPSRRDLLKGLGVG 21 (66)
T ss_pred cCCccHHHHHHHHHHH
Confidence 44568999887 4444
No 21
>PF12318 FAD-SLDH: Membrane bound FAD containing D-sorbitol dehydrogenase ; InterPro: IPR024651 There are two types of membrane-bound D-sorbitol dehydrogenase: PQQ-SLDH (pyrroloquinoline quinone sorbitol dehydrogenase) and FAD-SLDH (FAD-containing sorbitol dehydrogenase). FAD-SLDH is involved in oxidation of D-sorbitol to L-sorbose and consists of a large, small and cytochrome c subunits []. This entry represents the small subunit of the FAD-containing D-sorbitol dehydrogenase. This family of proteins is found in bacteria and contains a conserved ALM sequence motif. The role of the small subunit is unknown. Gluconate dehydrogenases and fructose dehydrogenases are also included in this entry.
Probab=21.56 E-value=35 Score=29.45 Aligned_cols=17 Identities=35% Similarity=0.514 Sum_probs=10.4
Q ss_pred cccchhhh--hhhhhhhcc
Q 025103 51 GFCRRDLV--LFGLSSSLS 67 (258)
Q Consensus 51 ~~~RR~ll--l~Gl~a~~a 67 (258)
+.+||++| +.++++..+
T Consensus 1 g~sRR~~L~~~~~~~~~~~ 19 (168)
T PF12318_consen 1 GLSRRRLLAGLGALGALAA 19 (168)
T ss_pred CCcHHHHHHHhHHHHHHHH
Confidence 45799999 444443333
No 22
>COG4041 Predicted membrane protein [Function unknown]
Probab=20.41 E-value=59 Score=28.87 Aligned_cols=15 Identities=60% Similarity=1.163 Sum_probs=12.3
Q ss_pred cceeeeeeeeeecCCCC
Q 025103 240 DGTFLGKICCLISPSAS 256 (258)
Q Consensus 240 ~~~~~~~~~~~~~~~~~ 256 (258)
.|||.|.|.| ||.||
T Consensus 57 ggyfmgnivc--spdas 71 (171)
T COG4041 57 GGYFMGNIVC--SPDAS 71 (171)
T ss_pred cceeecceee--CCCcc
Confidence 4899999998 67665
Done!