Query 025106
Match_columns 258
No_of_seqs 114 out of 148
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 02:44:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025106.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025106hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01115 F_actin_cap_B: F-acti 100.0 2E-122 3E-127 831.1 20.4 233 1-239 2-242 (242)
2 KOG3174 F-actin capping protei 100.0 2E-113 5E-118 769.9 18.7 248 1-254 6-258 (275)
3 PF01267 F-actin_cap_A: F-acti 98.5 1.3E-06 2.9E-11 80.5 11.3 230 2-249 4-254 (271)
4 KOG0836 F-actin capping protei 96.4 0.16 3.5E-06 47.9 15.2 215 3-247 12-259 (282)
5 TIGR01658 EYA-cons_domain eyes 44.3 7.6 0.00016 36.8 0.1 17 113-129 3-29 (274)
6 PF13199 Glyco_hydro_66: Glyco 41.7 1.1E+02 0.0023 31.8 7.7 50 70-121 396-449 (559)
7 PF08727 P3A: Poliovirus 3A pr 41.4 3.6 7.9E-05 30.6 -2.0 25 27-51 16-40 (57)
8 PF02757 YLP: YLP motif; Inte 37.0 21 0.00045 17.8 0.9 9 71-79 1-9 (9)
9 PRK00301 aat leucyl/phenylalan 32.5 1E+02 0.0022 28.8 5.4 24 97-120 114-137 (233)
10 KOG4646 Uncharacterized conser 30.3 43 0.00093 29.7 2.5 51 12-62 71-132 (173)
11 COG3360 Uncharacterized conser 29.9 1.2E+02 0.0025 23.7 4.4 32 149-180 33-69 (71)
12 PF03164 Mon1: Trafficking pro 29.7 2.3E+02 0.0051 27.8 7.7 77 28-120 279-363 (415)
13 KOG1852 Cell cycle-associated 29.3 69 0.0015 29.0 3.6 58 50-109 115-174 (223)
14 PF15232 DUF4585: Domain of un 28.2 34 0.00074 26.9 1.3 26 41-73 7-32 (75)
15 TIGR00667 aat leucyl/phenylala 26.9 2.6E+02 0.0055 25.3 6.8 24 97-120 84-107 (185)
16 PF14176 YxiJ: YxiJ-like prote 26.2 60 0.0013 27.1 2.5 24 80-103 12-35 (108)
17 PHA02086 hypothetical protein 21.1 70 0.0015 25.4 1.9 18 210-227 69-86 (88)
18 PF05554 Novirhabdo_Nv: Viral 20.7 36 0.00078 28.3 0.2 18 44-64 25-42 (122)
No 1
>PF01115 F_actin_cap_B: F-actin capping protein, beta subunit; InterPro: IPR001698 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. The actin filament system, a prominent part of the cytoskeleton in eukaryotic cells, is both a static structure and a dynamic network that can undergo rearrangements: it is thought to be involved in processes such as cell movement and phagocytosis [], as well as muscle contraction. The F-actin capping protein binds in a calcium-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike gelsolin (see IPR007122 from INTERPRO) and severin this protein does not sever actin filaments. The F-actin capping protein is a heterodimer composed of two unrelated subunits: alpha and beta. Neither of the subunits shows sequence similarity to other filament-capping proteins []. The beta subunit is a protein of about 280 amino acid residues whose sequence is well conserved in eukaryotic species [].; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0005737 cytoplasm, 0008290 F-actin capping protein complex; PDB: 3AAE_D 3LK4_Q 2KXP_B 2KZ7_B 3AA1_B 3LK2_B 3AA7_B 3AAA_B 1IZN_B 3AA0_B ....
Probab=100.00 E-value=1.6e-122 Score=831.12 Aligned_cols=233 Identities=59% Similarity=1.046 Sum_probs=206.7
Q ss_pred ChhHhhhhhcCCcccHHHHHHHHHccCcchhHHHhhcCCCceeeeeecccCceeeecccCCCCCCCCCCCCCCCCCCCC-
Q 025106 1 MEAAMGLMRRMPPKHSETALSALLSLLPDHSSDLLSQVDQPLQVLFDEESGKEFILCEYNRDADSYRSPWSNKYHPPLE- 79 (258)
Q Consensus 1 ~d~aLdLlRRlpP~~ie~nl~~l~~L~Pdl~edLLssVDqPLkv~~d~~~~k~yL~CdYNRDgDSYRSPwSNkY~P~l~- 79 (258)
+||||||||||||++||+||++||+|+|+||+||||+|||||||++|+++||+||||||||||||||||||||||||++
T Consensus 2 ~d~aLdLlRRlpP~~ie~nl~~l~~L~Pdl~edLLssVD~PLkv~~d~~~~k~yL~CdYNRDgDSYRSPwSNkY~P~~~~ 81 (242)
T PF01115_consen 2 LDAALDLLRRLPPKKIEKNLSNLIDLVPDLTEDLLSSVDQPLKVARDKETGKDYLLCDYNRDGDSYRSPWSNKYYPPLEG 81 (242)
T ss_dssp HHHHHHHHTTS-GGGHHHHHHHHHHHSGGGHHHHHHHS----EEEEETTTTEEEEESGGGEETTEEE-TTT--EES--S-
T ss_pred hhHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEchhhCCeeEeecccCCcccccCCCCcccCCCccc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----CCCCCChHHHHHHHHHHHHHHHHHHhhhcCCceeEEEeecCCC-CeeEEEEEEecCCCCcCCCCCCCCCccceeeE
Q 025106 80 ----DALYPPAELRKLEIEANEVFAIYRDQYYEGGISSVYMWEDDNE-GFVACFLIKKDGSKTAQGRRGHLEEGAWDAIH 154 (258)
Q Consensus 80 ----dg~~PS~~LR~LEi~aN~~Fd~Yr~lYYeGGvSSVYlWdld~~-gFag~vLiKK~~~~s~~~~~~~~~~G~WDSIH 154 (258)
||++||++||+||++||++||+||+||||||||||||||+|++ ||||||||||++++++. .+|+|||||
T Consensus 82 ~~~~dg~~PS~~LR~LEi~aN~~Fd~Yr~lYyeGGvSSVYlWd~d~~~gFag~vLiKK~~~~~~~------~~g~WDSIH 155 (242)
T PF01115_consen 82 DDLEDGPVPSERLRKLEIEANEAFDIYRDLYYEGGVSSVYLWDLDDDDGFAGVVLIKKEGDPSNE------ISGSWDSIH 155 (242)
T ss_dssp ----S-----HHHHHHHHHHHHHHHHHHHHHHSSSEEEEEEEEETT--EEEEEEEEEEEE-TGCC------EEEEEEEEE
T ss_pred cccCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEecCCCcceeEEEEEEecCCCCCC------ccceEeeeE
Confidence 9999999999999999999999999999999999999999976 99999999999666554 789999999
Q ss_pred EEEEeecCCceeEEEEeeEEEEEeeeCCCCcceeeecceeeeeecccccccc--chhhhhhhHHHHHHHHHHhhhhhhhh
Q 025106 155 VIEVAPEEEGIARYCLTSTVMLSLTTDHESSGTFSLSGSIRRQMNMDLSVSE--GHLCNMGKMIEEMEGKLRNSLDQVYF 232 (258)
Q Consensus 155 V~EV~~~~~~~~~YklTSTvmL~l~~~~~~~g~~~LsGsltRq~e~~~~~~~--~Hi~NiG~mIEdmE~~mR~~L~~VYf 232 (258)
||||++.++++|||||||||||+|++++++.|.|+|||+||||+|+++++++ +||+|||+|||+||++||++||+|||
T Consensus 156 V~Ev~~~~~~~a~YklTSTV~L~l~~~~~~~g~~~LsGsltrq~e~~~~~~~~~~Hi~NiG~lIEdmE~~mR~~L~~VYf 235 (242)
T PF01115_consen 156 VFEVTESSSGTAHYKLTSTVMLSLKTNDDASGSFNLSGSLTRQTEKDLPVSDSSSHIANIGRLIEDMENKMRNLLQEVYF 235 (242)
T ss_dssp EEEEEEETTSEEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEEEEEEEE-SSSS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCeEEEEEEEEEEEEEecCCCCCceEeecceeehhhccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999976555999999999999999988889999999999999999999987 99999999999999999999999999
Q ss_pred ccchHhh
Q 025106 233 GKTKEMV 239 (258)
Q Consensus 233 ~KtkdIv 239 (258)
|||||||
T Consensus 236 ~KtkdIv 242 (242)
T PF01115_consen 236 GKTKDIV 242 (242)
T ss_dssp THHHHHH
T ss_pred hhhhhcC
Confidence 9999997
No 2
>KOG3174 consensus F-actin capping protein, beta subunit [Cytoskeleton]
Probab=100.00 E-value=2.4e-113 Score=769.88 Aligned_cols=248 Identities=52% Similarity=0.915 Sum_probs=237.6
Q ss_pred ChhHhhhhhcCCcccHHHHHHHHHccCcchhHHHhhcCCCceeeeeecccCceeeecccCCCCCCCCCCCCCCCCCCCCC
Q 025106 1 MEAAMGLMRRMPPKHSETALSALLSLLPDHSSDLLSQVDQPLQVLFDEESGKEFILCEYNRDADSYRSPWSNKYHPPLED 80 (258)
Q Consensus 1 ~d~aLdLlRRlpP~~ie~nl~~l~~L~Pdl~edLLssVDqPLkv~~d~~~~k~yL~CdYNRDgDSYRSPwSNkY~P~l~d 80 (258)
+||||||||||||++||+||++||+|+|+|||||||||||||||++|+++||+||+||||||||||||||||+|+||++|
T Consensus 6 lD~ALDLmRrLpPqqieKnL~nLIdL~P~L~edLLsSVdqplKia~dke~g~~yllcDynrdgDsyRsPwsnsy~pPled 85 (275)
T KOG3174|consen 6 LDCALDLMRRLPPQQIEKNLSNLIDLAPHLCEDLLSSVDQPLKIARDKESGKQYLLCDYNRDGDSYRSPWSNSYDPPLED 85 (275)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhchHHHHHHHhhcccceeehhhhhcCCeeeeeecCCCcccccCCCCcccCCcccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhhhcCCceeEEEeecCCCCeeEEEEEEecCCCCcCCCCCCCCCccceeeEEEEEee
Q 025106 81 ALYPPAELRKLEIEANEVFAIYRDQYYEGGISSVYMWEDDNEGFVACFLIKKDGSKTAQGRRGHLEEGAWDAIHVIEVAP 160 (258)
Q Consensus 81 g~~PS~~LR~LEi~aN~~Fd~Yr~lYYeGGvSSVYlWdld~~gFag~vLiKK~~~~s~~~~~~~~~~G~WDSIHV~EV~~ 160 (258)
|++||++||+||+.||.+|++||++||||||||||+||++++||||+|||||++++.+. ..|||||||||||++
T Consensus 86 g~~Psd~lrklei~aN~af~~yrdly~egGvssVylwdld~~gfag~vlikK~~~~~~~------~~g~wdsIhvie~~~ 159 (275)
T KOG3174|consen 86 GVYPSDRLRKLEIEANLAFRSYRDLYYEGGVSSVYLWDLDFGGFAGVVLIKKAGDGHKN------IVGCWDSIHVIEVTE 159 (275)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhHHheecCcceEEEEeccCCCcccceEEeeccCCCCC------cccceeeeEEEEEec
Confidence 99999999999999999999999999999999999999999899999999999988776 679999999999997
Q ss_pred -cCCceeEEEEeeEEEEEeeeCCCCc-ceeeecceeeeeecccccccc--chhhhhhhHHHHHHHHHHhhhhhhhhccch
Q 025106 161 -EEEGIARYCLTSTVMLSLTTDHESS-GTFSLSGSIRRQMNMDLSVSE--GHLCNMGKMIEEMEGKLRNSLDQVYFGKTK 236 (258)
Q Consensus 161 -~~~~~~~YklTSTvmL~l~~~~~~~-g~~~LsGsltRq~e~~~~~~~--~Hi~NiG~mIEdmE~~mR~~L~~VYf~Ktk 236 (258)
.+++++|||||||+|||+++.+.++ |.|||+|+||||+|++.+|++ .||+|+|+|||+||++||++|++|||||||
T Consensus 160 ~~~~~s~~y~lTSTi~l~l~~~K~~s~~~mnl~g~Ltrq~e~d~~v~~~~tHian~gklve~~et~mr~~l~~iYfgkTk 239 (275)
T KOG3174|consen 160 ETSLRSAHYKLTSTIMLWLSTTKNESLGAMNLGGSLTRQTEKDVAVDDSRTHIANQGKLVEDMETKMRNLLNEIYFGKTK 239 (275)
T ss_pred ccccceeEEEeeeEEEEEecCCCccchhhhhhhhHhhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence 4578899999999999999887655 999999999999999999988 899999999999999999999999999999
Q ss_pred HhhcccCCCcccc-ccCCC
Q 025106 237 EMVCTLRPPSEVI-MRLPD 254 (258)
Q Consensus 237 dIv~~lRs~~~~~-~~~~~ 254 (258)
+|++.+|+++.++ +.+++
T Consensus 240 di~~~~Rs~~~~a~~~~~~ 258 (275)
T KOG3174|consen 240 DISNQLRSPQALADAESQD 258 (275)
T ss_pred HHHhhccchhhhhcccchh
Confidence 9999999999888 65543
No 3
>PF01267 F-actin_cap_A: F-actin capping protein alpha subunit; InterPro: IPR002189 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. The actin filament system, a prominent part of the cytoskeleton in eukaryotic cells, is both a static structure and a dynamic network that can undergo rearrangements: it is thought to be involved in processes such as cell movement and phagocytosis [], as well as muscle contraction. The F-actin capping protein binds in a calcium-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike gelsolin and severin this protein does not sever actin filaments. The F-actin capping protein is a heterodimer composed of two unrelated subunits: alpha and beta (see IPR001698 from INTERPRO). Neither of the subunits shows sequence similarity to other filament-capping proteins []. The alpha subunit is a protein of about 268 to 286 amino acid residues whose sequence is well conserved in eukaryotic species [].; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0008290 F-actin capping protein complex; PDB: 1MQ1_D 1MWN_X 2KBM_Y 2KZ7_A 3AAE_C 3AA6_A 3LK4_G 1IZN_A 3AA7_A 3AAA_A ....
Probab=98.48 E-value=1.3e-06 Score=80.52 Aligned_cols=230 Identities=21% Similarity=0.348 Sum_probs=145.1
Q ss_pred hhHhhhhhcCCcccHHHHHHHHHccCcc--hh-HHHhhc-----CCCceeeeeecccCceeeecccCCC-CCCCCCCCCC
Q 025106 2 EAAMGLMRRMPPKHSETALSALLSLLPD--HS-SDLLSQ-----VDQPLQVLFDEESGKEFILCEYNRD-ADSYRSPWSN 72 (258)
Q Consensus 2 d~aLdLlRRlpP~~ie~nl~~l~~L~Pd--l~-edLLss-----VDqPLkv~~d~~~~k~yL~CdYNRD-gDSYRSPwSN 72 (258)
+.|-+++..=||-++..-+++|..|+++ +. +.+... ++|-..|..+ ..+..+|.|.||+. ++.|==|=++
T Consensus 4 ~ii~~fl~~aPPGE~~~V~~Dlr~l~~dd~~~~~~i~~a~~~yn~~q~~~v~~~-~~~~~viis~~n~~~~~ry~Dp~~~ 82 (271)
T PF01267_consen 4 EIISSFLLQAPPGEFNEVFNDLRTLLGDDSLLKEGIAEAFEQYNEEQFIPVKLP-GSDHKVIISKYNKLGGNRYFDPRSK 82 (271)
T ss_dssp HHHHHHHHT--TT-HHHHHHHHHHHHT-HHHHHHHSHHHHHHHHHHTTEEE--T-TSSS-EEE-GGGBESTTEEEETTTT
T ss_pred HHHHHHHHcCCCccHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHCcEEEEeC-CCCcceEEecccccCCCeEEEeccC
Confidence 3466788888999999999999999998 22 222222 4555555543 33578999999999 4444333332
Q ss_pred C---CCCC------CCCCCCCChHHHHHHHHHHHHHHHHHHhhhcCCceeEEEeecCCC-CeeEEEEEEecCCCCcCCCC
Q 025106 73 K---YHPP------LEDALYPPAELRKLEIEANEVFAIYRDQYYEGGISSVYMWEDDNE-GFVACFLIKKDGSKTAQGRR 142 (258)
Q Consensus 73 k---Y~P~------l~dg~~PS~~LR~LEi~aN~~Fd~Yr~lYYeGGvSSVYlWdld~~-gFag~vLiKK~~~~s~~~~~ 142 (258)
+ |+.- .++...|++.+..+-....+++..|.+-+|..|+++||--+.++. .|+-|+.=.|- ++.+
T Consensus 83 ~~F~~DHl~~~~~d~e~~~~~~~~~e~~R~~l~~~l~~Yv~~hy~~g~~~V~~~~~~~~~~l~i~I~~~k~-n~~N---- 157 (271)
T PF01267_consen 83 KSFSVDHLKQKASDVEPYEPPDEELESYRDALDKALEKYVKEHYPSGACGVYPKSEEDKETLVICIVAHKY-NPKN---- 157 (271)
T ss_dssp EEEEEETTTTEEEEEEE-----TSSHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEETTEEEEEEEEEEEEE-EGGG----
T ss_pred cEEEEeeeccEEccCccccccccchHHHHHHHHHHHHHHHHHhccCceeEEEeccCCCccEEEEEEEeccc-cccc----
Confidence 2 1110 011223455666776888899999999999889999998887742 26666665553 3333
Q ss_pred CCCCCccceeeEEEEEeecCCceeEEEEeeEEEEEeeeCCCCcceeeecceeeeeecccccccc--chhhhhhhHHHHHH
Q 025106 143 GHLEEGAWDAIHVIEVAPEEEGIARYCLTSTVMLSLTTDHESSGTFSLSGSIRRQMNMDLSVSE--GHLCNMGKMIEEME 220 (258)
Q Consensus 143 ~~~~~G~WDSIHV~EV~~~~~~~~~YklTSTvmL~l~~~~~~~g~~~LsGsltRq~e~~~~~~~--~Hi~NiG~mIEdmE 220 (258)
.-.|.|-|.=+|.+. .++ .|+.+|-+.+-==.+ |.+.|..+ +..+.+..+++ ....+|=+.|++.|
T Consensus 158 --fwnG~WrS~w~~~~~-~~~-----~l~G~I~V~vHYyEd--GNVqL~~~--k~~~~~~~~~~~~~~a~~iv~~I~~~E 225 (271)
T PF01267_consen 158 --FWNGRWRSEWTVDFS-SSG-----TLSGKIKVQVHYYED--GNVQLNSS--KEVSETVSVSNDEQFASDIVKAIKEAE 225 (271)
T ss_dssp --TEEEEEEEEEEEEEE-TTE-----EEEEEEEEEEEE-TT--EEEEEEEE--EEEEEEEE--SHHHHHHHHHHHHHHHH
T ss_pred --ccCceeeEEEEEecC-CCc-----eEEEEEEeeEEEEee--cEEEEEEc--cccceeeccCChhhhHHHHHHHHHHHH
Confidence 357999999999984 222 677888777643333 55655432 33333333333 56788889999999
Q ss_pred HHHHhhhhhhhhccchHhhcccCCCcccc
Q 025106 221 GKLRNSLDQVYFGKTKEMVCTLRPPSEVI 249 (258)
Q Consensus 221 ~~mR~~L~~VYf~KtkdIv~~lRs~~~~~ 249 (258)
+++-..|++-|-.=...-+..||..-+.+
T Consensus 226 ~~~q~~L~e~~~~ls~~tFK~LRR~LPVT 254 (271)
T PF01267_consen 226 NKYQTSLNESYNNLSEKTFKALRRQLPVT 254 (271)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHS-SS-TT
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhhhCCCC
Confidence 99999999999877777788899766554
No 4
>KOG0836 consensus F-actin capping protein, alpha subunit [Cytoskeleton]
Probab=96.44 E-value=0.16 Score=47.91 Aligned_cols=215 Identities=18% Similarity=0.287 Sum_probs=130.9
Q ss_pred hHhhhhhcCCcccHHHHHHHHHccCcchh---HHHh-----hcCCCceeeeeecccCceeeecccCCCCCCCCCCCCCCC
Q 025106 3 AAMGLMRRMPPKHSETALSALLSLLPDHS---SDLL-----SQVDQPLQVLFDEESGKEFILCEYNRDADSYRSPWSNKY 74 (258)
Q Consensus 3 ~aLdLlRRlpP~~ie~nl~~l~~L~Pdl~---edLL-----ssVDqPLkv~~d~~~~k~yL~CdYNRDgDSYRSPwSNkY 74 (258)
.|-++++.=||-.+.+-.++|+.|.-+=. +... =.+||=..|.-+-- ..+=|...||+-|++ +|
T Consensus 12 ii~kfi~~APPGEfneVf~Dlr~ll~~d~l~~e~~~~A~~qYn~~~~vpv~i~g~-~~~viIS~~n~lg~~-------rf 83 (282)
T KOG0836|consen 12 IISKFILHAPPGEFNEVFNDLRLLLSNDELLKEAAHEAFAQYNVDQMVPVEIDGG-ANQVIISEYNDLGNN-------RF 83 (282)
T ss_pred HHHHHHhhCCChHHHHHHHHHHHHhcchhHHHHHHHHHHHHhchhcceeEecCCC-CCceEEecccccCcc-------ee
Confidence 46788999999999999999999874311 1111 24565433333321 257899999999963 33
Q ss_pred CCCCCC---------------CCCC--ChHHHHHHHHHHHHHHHHHHhhhcCCceeEEEeecCCC--CeeEEEEEEecCC
Q 025106 75 HPPLED---------------ALYP--PAELRKLEIEANEVFAIYRDQYYEGGISSVYMWEDDNE--GFVACFLIKKDGS 135 (258)
Q Consensus 75 ~P~l~d---------------g~~P--S~~LR~LEi~aN~~Fd~Yr~lYYeGGvSSVYlWdld~~--gFag~vLiKK~~~ 135 (258)
+-|-.. .+.+ ...........-..-..|..-+|-||+|.| +.-.++. .|-.|+-=.+ -+
T Consensus 84 ~Dp~~k~sFk~dhl~kea~d~qp~~~~~~~~E~~r~~l~~~l~~y~~~hy~~~~t~~-vkk~dg~~~~l~icIesh~-y~ 161 (282)
T KOG0836|consen 84 LDPVNKKSFKYDHLRKEAEDVQPYEAEINIIEIWRYALDAQLKKYVSDHYPKGVTFV-VKKSDGEQETLTICIESHQ-YQ 161 (282)
T ss_pred cchhhceeeeHHHHHHHhccCCCcchhhhhhHHHHHHHHHHHHHHHHhccCCCceEE-EeccCCcceEEEEEEeecc-cC
Confidence 333221 1111 111222333455567789999999999988 7766632 2444443222 22
Q ss_pred CCcCCCCCCCCCccceeeEEEEEeec---CCc---eeEEEEeeEEEEEeeeCCCCcceeeecceeeeeeccccccccchh
Q 025106 136 KTAQGRRGHLEEGAWDAIHVIEVAPE---EEG---IARYCLTSTVMLSLTTDHESSGTFSLSGSIRRQMNMDLSVSEGHL 209 (258)
Q Consensus 136 ~s~~~~~~~~~~G~WDSIHV~EV~~~---~~~---~~~YklTSTvmL~l~~~~~~~g~~~LsGsltRq~e~~~~~~~~Hi 209 (258)
+.+.=.|.|.|+-.|.|++. .|+ ++||-=..-|-|. ..++-.-.+++ +.+.. -.
T Consensus 162 ------pkNfwNG~WRS~w~~~v~~~~~l~G~i~vqvHYyEdGNV~l~--s~Kd~qds~~v------sn~~q------~a 221 (282)
T KOG0836|consen 162 ------PKNFWNGRWRSEWNYDVQPTTELKGRIKVQVHYYEDGNVQLV--SSKDIQDSLTV------SNEVQ------TA 221 (282)
T ss_pred ------cccccCCceeeeeeeccCchheeeeEEEEEEEEEecCcEEEE--ecCcchhhhee------echHH------HH
Confidence 22446799999999999851 222 2777666655544 33321112222 22211 22
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhccchHhhcccCCCcc
Q 025106 210 CNMGKMIEEMEGKLRNSLDQVYFGKTKEMVCTLRPPSE 247 (258)
Q Consensus 210 ~NiG~mIEdmE~~mR~~L~~VYf~KtkdIv~~lRs~~~ 247 (258)
.-+=++||+.|+..-+.|++-|+.=.-.-+..||.--+
T Consensus 222 ~e~~~iI~~~Eneyq~ai~e~yq~lsD~tFKaLRRqLP 259 (282)
T KOG0836|consen 222 KEFIKIIEEAENEYQAAISENYQTLSDTTFKALRRQLP 259 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHhhCC
Confidence 34567899999999999999999766666677775433
No 5
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=44.35 E-value=7.6 Score=36.81 Aligned_cols=17 Identities=29% Similarity=0.825 Sum_probs=13.4
Q ss_pred eEEEeecCC----------CCeeEEEE
Q 025106 113 SVYMWEDDN----------EGFVACFL 129 (258)
Q Consensus 113 SVYlWdld~----------~gFag~vL 129 (258)
.||+||+|+ |.||+-|=
T Consensus 3 ~VfvWDlDETlIif~SLL~GsyA~~f~ 29 (274)
T TIGR01658 3 NVYVWDMDETLILLHSLLNGSYAESFN 29 (274)
T ss_pred eeEEEeccchHHHHHHhhcchHHHHcC
Confidence 599999997 66777654
No 6
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=41.70 E-value=1.1e+02 Score=31.85 Aligned_cols=50 Identities=24% Similarity=0.386 Sum_probs=32.5
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhhcCCce----eEEEeecCC
Q 025106 70 WSNKYHPPLEDALYPPAELRKLEIEANEVFAIYRDQYYEGGIS----SVYMWEDDN 121 (258)
Q Consensus 70 wSNkY~P~l~dg~~PS~~LR~LEi~aN~~Fd~Yr~lYYeGGvS----SVYlWdld~ 121 (258)
.+++||| .....=|+.|.+-...+=+-+-+|.+|.++|++- +.=.++.++
T Consensus 396 L~~eYfP--~~~~~m~~~l~~~l~~YYdF~tAYenLLrd~~~~~~~~~~~~~~~~~ 449 (559)
T PF13199_consen 396 LANEYFP--NRNLKMSEELKKALYSYYDFITAYENLLRDGGVENVDASNVTVENAG 449 (559)
T ss_dssp --SSSTT-----SB--HHHHHHHHHHHHHHHHTHHHHHSS--EE-SS--EEE-TTS
T ss_pred ccccccc--CCCcccCHHHHHHHHHHHHHHHHHHHHhcCCcccccccceeEEEcCC
Confidence 3688999 4444447899999999999999999999999874 555566553
No 7
>PF08727 P3A: Poliovirus 3A protein like; InterPro: IPR014838 The 3A protein is found in positive-strand RNA viruses. It is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity; PDB: 1NG7_A.
Probab=41.40 E-value=3.6 Score=30.64 Aligned_cols=25 Identities=40% Similarity=0.514 Sum_probs=18.9
Q ss_pred CcchhHHHhhcCCCceeeeeecccC
Q 025106 27 LPDHSSDLLSQVDQPLQVLFDEESG 51 (258)
Q Consensus 27 ~Pdl~edLLssVDqPLkv~~d~~~~ 51 (258)
.|.-..|||+|||.|=-+.+|++.|
T Consensus 16 ~P~~I~DLL~SV~~~eV~~YC~~~G 40 (57)
T PF08727_consen 16 PPPAIADLLRSVDSPEVREYCEEQG 40 (57)
T ss_dssp SS-TTHHHHHHH--HHHHHHHHHHT
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHCC
Confidence 4888999999999998888888765
No 8
>PF02757 YLP: YLP motif; InterPro: IPR004019 The YLP motif is found in one or several copies in various Drosophila proteins. Its function is unknown, however the presence of completely conserved tyrosine residues and its presence in the human Erbb-2 and ErbB-4 receptor protein-tyrosine kinases (2.7.10.1 from EC) may suggest it could be a substrate for tyrosine kinases. ErbBs (1-4) are single-pass transmembrane proteins that activate a wide variety of signalling pathways, including those involved in proliferation, migration, differentiation, survival, and apoptosis; they are frequently misregulated in cancer []. ErbB-2 is an essential component of a neuregulin-receptor complex, although neuregulins do not interact with it alone. ErbB-4 specifically binds and is activated by neuregulins, NRG-2, NRG-3, heparin-binding EGF-like growth factor, betacellulin and NTAK [].
Probab=36.98 E-value=21 Score=17.81 Aligned_cols=9 Identities=67% Similarity=1.246 Sum_probs=6.7
Q ss_pred CCCCCCCCC
Q 025106 71 SNKYHPPLE 79 (258)
Q Consensus 71 SNkY~P~l~ 79 (258)
||+|-||.+
T Consensus 1 s~eYLpP~~ 9 (9)
T PF02757_consen 1 SNEYLPPVE 9 (9)
T ss_pred CccccCCCC
Confidence 688988753
No 9
>PRK00301 aat leucyl/phenylalanyl-tRNA--protein transferase; Reviewed
Probab=32.54 E-value=1e+02 Score=28.76 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=19.3
Q ss_pred HHHHHHHHhhhcCCceeEEEeecC
Q 025106 97 EVFAIYRDQYYEGGISSVYMWEDD 120 (258)
Q Consensus 97 ~~Fd~Yr~lYYeGGvSSVYlWdld 120 (258)
++.+.|.+|+-.|=.-||=+|+-+
T Consensus 114 e~~~aY~~LH~~G~AHSVE~W~~~ 137 (233)
T PRK00301 114 EIIEAYLELHELGHAHSVEVWQGG 137 (233)
T ss_pred HHHHHHHHHHHcCceEEEEEEECC
Confidence 455679999888878999999855
No 10
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=30.27 E-value=43 Score=29.74 Aligned_cols=51 Identities=16% Similarity=0.047 Sum_probs=36.4
Q ss_pred CcccHHHHHHHHHccCcchh--HHHhhcCCCceeeeeecc---------cCceeeecccCCC
Q 025106 12 PPKHSETALSALLSLLPDHS--SDLLSQVDQPLQVLFDEE---------SGKEFILCEYNRD 62 (258)
Q Consensus 12 pP~~ie~nl~~l~~L~Pdl~--edLLssVDqPLkv~~d~~---------~~k~yL~CdYNRD 62 (258)
+-.-+|--+.+||+||||=+ +-++..--.||-|..-.. .+-.|++|+|||-
T Consensus 71 ne~LvefgIgglCNlC~d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt 132 (173)
T KOG4646|consen 71 NELLVEFGIGGLCNLCLDKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERT 132 (173)
T ss_pred cHHHHHHhHHHHHhhccChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccc
Confidence 44557888999999998765 567777778876654322 2234899999983
No 11
>COG3360 Uncharacterized conserved protein [Function unknown]
Probab=29.86 E-value=1.2e+02 Score=23.71 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=23.9
Q ss_pred cceeeEEEEEeec-----CCceeEEEEeeEEEEEeee
Q 025106 149 AWDAIHVIEVAPE-----EEGIARYCLTSTVMLSLTT 180 (258)
Q Consensus 149 ~WDSIHV~EV~~~-----~~~~~~YklTSTvmL~l~~ 180 (258)
+-|-+.+|||.+. .|..+||++|--|=+.|..
T Consensus 33 t~~~l~wfeV~~~rg~v~~g~v~hyqv~lkVgFrl~~ 69 (71)
T COG3360 33 TLDNLDWFEVVETRGHVVDGAVAHYQVTLKVGFRLDD 69 (71)
T ss_pred hhhcceEEEEEeecccEeecceEEEEEEEEEEEEecC
Confidence 4566788998862 3667999999888777653
No 12
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].
Probab=29.67 E-value=2.3e+02 Score=27.83 Aligned_cols=77 Identities=19% Similarity=0.374 Sum_probs=48.4
Q ss_pred cchhHHHhhcCCCc--eeeeeecccC-ceeeecccCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 025106 28 PDHSSDLLSQVDQP--LQVLFDEESG-KEFILCEYNRDADSYRSPWSNKYHPPLEDALYPPAELRKLEIEANEVFAIYRD 104 (258)
Q Consensus 28 Pdl~edLLssVDqP--Lkv~~d~~~~-k~yL~CdYNRDgDSYRSPwSNkY~P~l~dg~~PS~~LR~LEi~aN~~Fd~Yr~ 104 (258)
..+.+.|.+++..| ..+..-+..+ +.|+ |+|+-.++|.-|--..++++..-|+ +++..|+.
T Consensus 279 ~~~~~~l~~~~~~~~~~~~~~ig~p~L~HFi----------YKsk~~~Q~~~p~~~~~~~~~~~~~------rL~~~Y~~ 342 (415)
T PF03164_consen 279 SGCLEALISALSNSSSYSISDIGIPELRHFI----------YKSKSNNQFVSPEFSPPYNSPDERK------RLFRLYQK 342 (415)
T ss_pred ccHHHHHHHHHHhhcCCCcccCCCCceEEEE----------EEecCCCceeCCCCCCCCCChHHHH------HHHHHHHH
Confidence 45556666666663 3332222223 7888 8999999998765556666666554 67778888
Q ss_pred hhh---c--CCceeEEEeecC
Q 025106 105 QYY---E--GGISSVYMWEDD 120 (258)
Q Consensus 105 lYY---e--GGvSSVYlWdld 120 (258)
+|- . ..+-..|.|..+
T Consensus 343 L~~~~h~~~~~~k~~y~~~~~ 363 (415)
T PF03164_consen 343 LHSSMHSSSRPLKLIYRWTEK 363 (415)
T ss_pred HHHHHhCCCCCeeEEEEecCC
Confidence 872 2 235667777644
No 13
>KOG1852 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=29.32 E-value=69 Score=28.96 Aligned_cols=58 Identities=26% Similarity=0.394 Sum_probs=35.7
Q ss_pred cCceeeecccCCCC-CCCCCC-CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhhcC
Q 025106 50 SGKEFILCEYNRDA-DSYRSP-WSNKYHPPLEDALYPPAELRKLEIEANEVFAIYRDQYYEG 109 (258)
Q Consensus 50 ~~k~yL~CdYNRDg-DSYRSP-wSNkY~P~l~dg~~PS~~LR~LEi~aN~~Fd~Yr~lYYeG 109 (258)
+-|+-=+-||-|.- |.=-.| =||||+|.- --.--..+-||-.-+-.+|.++-..||..
T Consensus 115 tpkecpaidytrhtldgaacllnsnkyfpsr--vsikessv~klgsvcrrvyrifsha~fhh 174 (223)
T KOG1852|consen 115 TPKECPAIDYTRHTLDGAACLLNSNKYFPSR--VSIKESSVAKLGSVCRRVYRIFSHAYFHH 174 (223)
T ss_pred CcccCCcccchhhccccccccccCCccCCcc--cchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44454555887731 222344 389999932 11223457788888888888887766543
No 14
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=28.15 E-value=34 Score=26.86 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=19.3
Q ss_pred ceeeeeecccCceeeecccCCCCCCCCCCCCCC
Q 025106 41 PLQVLFDEESGKEFILCEYNRDADSYRSPWSNK 73 (258)
Q Consensus 41 PLkv~~d~~~~k~yL~CdYNRDgDSYRSPwSNk 73 (258)
+=||..|++||++|+ -|.=|.|=.-.
T Consensus 7 qrKvL~DP~SG~Yy~-------vd~P~Qp~~k~ 32 (75)
T PF15232_consen 7 QRKVLQDPESGQYYV-------VDAPVQPKTKT 32 (75)
T ss_pred CccEeecCCCCCEEE-------EecCCCcceee
Confidence 448999999999998 46666655443
No 15
>TIGR00667 aat leucyl/phenylalanyl-tRNA--protein transferase. The N-terminal residue controls the biological half-life of many proteins via the N-end rule pathway. This enzyme transfers a Leu or Phe to the amino end of certain proteins to enable degradation.
Probab=26.94 E-value=2.6e+02 Score=25.31 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=18.4
Q ss_pred HHHHHHHHhhhcCCceeEEEeecC
Q 025106 97 EVFAIYRDQYYEGGISSVYMWEDD 120 (258)
Q Consensus 97 ~~Fd~Yr~lYYeGGvSSVYlWdld 120 (258)
++-+.|.+|.=.|=.-||=+|+-+
T Consensus 84 e~~~aY~~LH~~G~AHSvEvw~~~ 107 (185)
T TIGR00667 84 ELVEAYHRLHELGHAHSFEVWQGD 107 (185)
T ss_pred HHHHHHHHHHHhCceEEEEEEECC
Confidence 445668888777767999999854
No 16
>PF14176 YxiJ: YxiJ-like protein
Probab=26.16 E-value=60 Score=27.09 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=19.7
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHH
Q 025106 80 DALYPPAELRKLEIEANEVFAIYR 103 (258)
Q Consensus 80 dg~~PS~~LR~LEi~aN~~Fd~Yr 103 (258)
.+|+|++.+|++|...+.-|+.++
T Consensus 12 ~~PfP~~~~~k~~~d~~~~fe~~~ 35 (108)
T PF14176_consen 12 HKPFPSDDIRKIERDLESDFEDDC 35 (108)
T ss_pred cCCCChHHHHHHHHHHHhhhhhhh
Confidence 488999999999988877775543
No 17
>PHA02086 hypothetical protein
Probab=21.13 E-value=70 Score=25.44 Aligned_cols=18 Identities=28% Similarity=0.540 Sum_probs=15.3
Q ss_pred hhhhhHHHHHHHHHHhhh
Q 025106 210 CNMGKMIEEMEGKLRNSL 227 (258)
Q Consensus 210 ~NiG~mIEdmE~~mR~~L 227 (258)
+|+|++|.+||-+|....
T Consensus 69 ~~~~~ii~~m~~~mk~e~ 86 (88)
T PHA02086 69 ANIPNVIDEMIEKMKAEV 86 (88)
T ss_pred cchhHHHHHHHHHHHhhc
Confidence 578999999999998654
No 18
>PF05554 Novirhabdo_Nv: Viral hemorrhagic septicemia virus non-virion protein; InterPro: IPR008720 This family consists of several viral hemorrhagic septicemia virus non-virion (Nv) proteins. The NV protein is a nonstructural protein absent from mature virions although it is present in infected cells. The function of this protein is unknown [].
Probab=20.67 E-value=36 Score=28.34 Aligned_cols=18 Identities=22% Similarity=0.639 Sum_probs=13.2
Q ss_pred eeeecccCceeeecccCCCCC
Q 025106 44 VLFDEESGKEFILCEYNRDAD 64 (258)
Q Consensus 44 v~~d~~~~k~yL~CdYNRDgD 64 (258)
..+|+. .||.||+||-.=
T Consensus 25 l~fdps---nylncd~drsdi 42 (122)
T PF05554_consen 25 LTFDPS---NYLNCDIDRSDI 42 (122)
T ss_pred cccCcc---cccccccchhhc
Confidence 455665 799999998543
Done!