Query 025106
Match_columns 258
No_of_seqs 114 out of 148
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 03:51:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025106.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025106hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lk4_B F-actin-capping protein 100.0 7E-127 2E-131 869.8 23.2 242 1-249 6-250 (277)
2 4akr_B F-actin-capping protein 100.0 5E-126 2E-130 868.2 21.8 244 1-249 24-270 (290)
3 3aa0_B F-actin-capping protein 100.0 2E-124 8E-129 842.0 23.0 236 1-243 6-244 (244)
4 3aa0_A F-actin-capping protein 100.0 2E-57 6.8E-62 414.6 13.6 230 1-249 14-265 (286)
5 4akr_A F-actin-capping protein 98.8 4.9E-08 1.7E-12 89.3 14.3 220 4-249 11-261 (281)
6 2l08_A Regulator of nonsense t 49.7 2.7 9.4E-05 32.8 -0.6 19 7-25 13-31 (97)
7 1uw4_A UPF3X; nonsense mediate 39.6 7.3 0.00025 29.7 0.4 19 7-25 5-23 (91)
8 1wgl_A TOLL-interacting protei 38.8 11 0.00037 26.7 1.2 28 11-38 4-31 (59)
9 1xe0_A Nucleophosmin; drosophi 36.4 1.5E+02 0.0052 23.5 7.7 37 114-160 20-56 (114)
10 3t30_B Nucleoplasmin-2; beta-b 32.6 70 0.0024 25.3 5.1 10 151-160 45-54 (110)
11 3a4c_A DNA replication factor 29.1 19 0.00065 28.7 1.2 22 10-31 50-71 (106)
12 3onr_A Protein transport prote 28.9 66 0.0023 23.8 4.1 29 152-180 35-68 (72)
13 1ng7_A Poliovirus 3A-N, genome 28.0 6 0.0002 28.7 -1.7 25 27-51 18-42 (60)
14 2yiz_A Dodecin; flavoprotein, 27.3 86 0.003 23.0 4.4 30 150-179 33-67 (69)
15 2vxa_A Dodecin; flavoprotein, 27.1 98 0.0034 22.8 4.8 30 151-180 35-69 (72)
16 2cc6_A VNG1446H, dodecin; flav 26.5 90 0.0031 22.8 4.4 30 150-179 31-65 (68)
17 2ux9_A Dodecin; flavoprotein; 25.3 1E+02 0.0034 22.6 4.5 30 150-179 33-67 (69)
18 1bby_A RAP30; average structur 23.3 12 0.0004 27.6 -0.9 59 10-73 3-62 (69)
No 1
>3lk4_B F-actin-capping protein subunit beta isoforms 1 and 2; CAPZ, CD2AP, actin filaments, uncapping, actin-filament regulators, protein-protein comple, actin capping, actin- binding; 1.99A {Gallus gallus} PDB: 2kz7_B 3aaa_B 3aae_B 3lk3_B 1izn_B
Probab=100.00 E-value=7.2e-127 Score=869.78 Aligned_cols=242 Identities=52% Similarity=0.943 Sum_probs=227.1
Q ss_pred ChhHhhhhhcCCcccHHHHHHHHHccCcchhHHHhhcCCCceeeeeecccCceeeecccCCCCCCCCCCCCCCCCCCCCC
Q 025106 1 MEAAMGLMRRMPPKHSETALSALLSLLPDHSSDLLSQVDQPLQVLFDEESGKEFILCEYNRDADSYRSPWSNKYHPPLED 80 (258)
Q Consensus 1 ~d~aLdLlRRlpP~~ie~nl~~l~~L~Pdl~edLLssVDqPLkv~~d~~~~k~yL~CdYNRDgDSYRSPwSNkY~P~l~d 80 (258)
+||||||||||||++||+||++||+|+|+||+||||+|||||||++|+++||+|||||||||||||||||||+|+||++|
T Consensus 6 ~daaLdLlRRLpP~~ie~nl~~l~~L~P~L~edLLssVDqPLki~~d~~~~k~yL~CDYNRDgDSYRSPwSNkY~Ppl~d 85 (277)
T 3lk4_B 6 LDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSNKYDPPLED 85 (277)
T ss_dssp HHHHHHHHTTSCGGGHHHHHHHHHHHCGGGHHHHHHHSCCCCEEEEETTTTEEEEECGGGEETTEEECTTTCCEESCCSS
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhhChHhHHHHHHhCCcCceEeEccccCCeeEeecccCCCccccCCCcCCcCCCCcC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhhhcCCceeEEEeecCCCCeeEEEEEEecCCCCcCCCCCCCCCccceeeEEEEEee
Q 025106 81 ALYPPAELRKLEIEANEVFAIYRDQYYEGGISSVYMWEDDNEGFVACFLIKKDGSKTAQGRRGHLEEGAWDAIHVIEVAP 160 (258)
Q Consensus 81 g~~PS~~LR~LEi~aN~~Fd~Yr~lYYeGGvSSVYlWdld~~gFag~vLiKK~~~~s~~~~~~~~~~G~WDSIHV~EV~~ 160 (258)
|++||++||+||++||++||+||+||||||||||||||+|+ ||||||||||+++++++ .+|+|||||||||++
T Consensus 86 g~~PS~~LRkLEi~aN~aFd~Yr~lYYeGGvSSVYlWdld~-gFagvvLiKK~~~~~~~------~~G~WDSIHV~Ev~~ 158 (277)
T 3lk4_B 86 GAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVYLWDLDH-GFAGVILIKKAGDGSKK------IKGCWDSIHVVEVQE 158 (277)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEEEEETT-EEEEEEEEEEECCCGGG------EEEEEEEEEEEEEEC
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEecCC-CeEEEEEEEecCCCccc------cccceeeeEEEEEee
Confidence 99999999999999999999999999999999999999995 79999999999887764 689999999999985
Q ss_pred -cCCceeEEEEeeEEEEEeeeCCCCcceeeecceeeeeecccccccc--chhhhhhhHHHHHHHHHHhhhhhhhhccchH
Q 025106 161 -EEEGIARYCLTSTVMLSLTTDHESSGTFSLSGSIRRQMNMDLSVSE--GHLCNMGKMIEEMEGKLRNSLDQVYFGKTKE 237 (258)
Q Consensus 161 -~~~~~~~YklTSTvmL~l~~~~~~~g~~~LsGsltRq~e~~~~~~~--~Hi~NiG~mIEdmE~~mR~~L~~VYf~Ktkd 237 (258)
.+++++||||||||||+|++++++.|.|+|||+||||+|+++++++ +||+|||+|||+||++||++|++||||||||
T Consensus 159 ~~~~~~~~YklTSTVmL~l~~~~~~~g~~~LsGsltRq~e~~~~v~~~~~Hi~NiG~mVEdmE~~mRn~L~~VYFgKtkd 238 (277)
T 3lk4_B 159 KSSGRTAHYKLTSTVMLWLQTNKTGSGTMNLGGSLTRQMEKDETVSDSSPHIANIGRLVEDMENKIRSTLNEIYFGKTKD 238 (277)
T ss_dssp ----CEEEEEEEEEEEEEEEECCSSSSEEEEEEEEEEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred ccCCceeEEEEeEEEEEEEEcCCCCcceEeeceeeeeeccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3678899999999999999998889999999999999999999988 9999999999999999999999999999999
Q ss_pred hhcccCCCcccc
Q 025106 238 MVCTLRPPSEVI 249 (258)
Q Consensus 238 Iv~~lRs~~~~~ 249 (258)
||++|||+.+++
T Consensus 239 Iv~~lRs~~~~~ 250 (277)
T 3lk4_B 239 IVNGLRSIDAIP 250 (277)
T ss_dssp HHHTTC------
T ss_pred HHHHhhcCCCch
Confidence 999999999887
No 2
>4akr_B F-actin-capping protein subunit beta; actin-binding protein; 2.20A {Dictyostelium discoideum}
Probab=100.00 E-value=4.9e-126 Score=868.16 Aligned_cols=244 Identities=51% Similarity=0.911 Sum_probs=230.5
Q ss_pred ChhHhhhhhcCCcccHHHHHHHHHccCcchhHHHhhcCCCceeeeeecccCceeeecccCCCCCCCCCCCCCCCCCCCCC
Q 025106 1 MEAAMGLMRRMPPKHSETALSALLSLLPDHSSDLLSQVDQPLQVLFDEESGKEFILCEYNRDADSYRSPWSNKYHPPLED 80 (258)
Q Consensus 1 ~d~aLdLlRRlpP~~ie~nl~~l~~L~Pdl~edLLssVDqPLkv~~d~~~~k~yL~CdYNRDgDSYRSPwSNkY~P~l~d 80 (258)
+||||||||||||++||+||++||+|+|+||+||||+|||||||++|+++||+|||||||||||||||||||||+||++|
T Consensus 24 ~daaLdLlRRLpP~~ie~nL~~Li~L~Pdl~edLLssVDqPLki~~d~~~~k~yL~CDYNRDGDSYRSPwSNkY~Ppl~d 103 (290)
T 4akr_B 24 LSCCLDLMRRLPPSQIEDNLAGLLDLVPDLTEDLLSSIDQPLKVAYDAVSKKDYLLCDYNRDADSYRSPWSNKYDPPLSG 103 (290)
T ss_dssp HHHHHHHHHHSCGGGHHHHHHHHHHHCGGGHHHHHHHCCCCCEEEEETTTTEEEEECGGGEETTEEECTTTCCEESCCSS
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhhChHhHHHHHHhCCCcceEeEccccCCeEEeecccCCCccccCCCCCCcCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhhhcCCceeEEEeecCCCCeeEEEEEEecCCCCcCCCCCCCCCccceeeEEEEEee
Q 025106 81 ALYPPAELRKLEIEANEVFAIYRDQYYEGGISSVYMWEDDNEGFVACFLIKKDGSKTAQGRRGHLEEGAWDAIHVIEVAP 160 (258)
Q Consensus 81 g~~PS~~LR~LEi~aN~~Fd~Yr~lYYeGGvSSVYlWdld~~gFag~vLiKK~~~~s~~~~~~~~~~G~WDSIHV~EV~~ 160 (258)
|++||++||+||++||++||+||+||||||||||||||+|+ ||||||||||+++++++| +..+|+|||||||||++
T Consensus 104 g~~PS~~LRkLEi~aN~aFd~Yr~lYYeGGvSSVYlWdld~-gFagvvLiKK~~~~~~~g---~~~~G~WDSIHV~Ev~~ 179 (290)
T 4akr_B 104 ACYPSSKLRDIEVQANEIFEIYLNLYFEGGVSSVYCWDLDD-NFAAVVLMKKTQDQSKKG---QPMRGTWDSIHVVEVKL 179 (290)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEEEEETT-EEEEEEEEEEEEC---------CEEEEEEEEEEEEEEE
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHhcCCeeEEEEEecCC-CceEEEEEEeccCccccc---cCCCCceeeeEEEEEee
Confidence 99999999999999999999999999999999999999995 899999999998887531 23789999999999984
Q ss_pred cCCce-eEEEEeeEEEEEeeeCCCCcceeeecceeeeeecccccccc--chhhhhhhHHHHHHHHHHhhhhhhhhccchH
Q 025106 161 EEEGI-ARYCLTSTVMLSLTTDHESSGTFSLSGSIRRQMNMDLSVSE--GHLCNMGKMIEEMEGKLRNSLDQVYFGKTKE 237 (258)
Q Consensus 161 ~~~~~-~~YklTSTvmL~l~~~~~~~g~~~LsGsltRq~e~~~~~~~--~Hi~NiG~mIEdmE~~mR~~L~~VYf~Ktkd 237 (258)
++++ +||||||||||+|++++++.|.|+||||||||+|+++++++ +||+|||+|||+||++||++|++||||||||
T Consensus 180 -~~~~~a~YklTSTVmL~L~t~~~~~g~~~LsGslTRq~e~~~~v~d~~~HI~NiG~mVEdmE~kmRn~L~eVYFgKtkd 258 (290)
T 4akr_B 180 -GKKDKAVYKLTSTVMLSIETDNDNTGKVNLAGSLTRQDEKEYTFNEVDTHCVNIGKMVEDMESKLRQTLETIYFGKTKE 258 (290)
T ss_dssp -ETTTEEEEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred -cCCCceEEEEeEEEEEEEecCCCCCceEeeeeeeeeecccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4555 99999999999999988889999999999999999999988 9999999999999999999999999999999
Q ss_pred hhcccCCCcccc
Q 025106 238 MVCTLRPPSEVI 249 (258)
Q Consensus 238 Iv~~lRs~~~~~ 249 (258)
||++|||+.+++
T Consensus 259 Iv~~lRs~~~~~ 270 (290)
T 4akr_B 259 VVNTLRNATGNS 270 (290)
T ss_dssp HHHHHSCTTCCC
T ss_pred HHHhhccCCcch
Confidence 999999999887
No 3
>3aa0_B F-actin-capping protein subunit beta isoforms 1 A; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Gallus gallus} PDB: 3aa1_B* 3aa6_B 3aa7_B* 2kxp_B 3lk2_B
Probab=100.00 E-value=2.2e-124 Score=842.02 Aligned_cols=236 Identities=54% Similarity=0.969 Sum_probs=228.1
Q ss_pred ChhHhhhhhcCCcccHHHHHHHHHccCcchhHHHhhcCCCceeeeeecccCceeeecccCCCCCCCCCCCCCCCCCCCCC
Q 025106 1 MEAAMGLMRRMPPKHSETALSALLSLLPDHSSDLLSQVDQPLQVLFDEESGKEFILCEYNRDADSYRSPWSNKYHPPLED 80 (258)
Q Consensus 1 ~d~aLdLlRRlpP~~ie~nl~~l~~L~Pdl~edLLssVDqPLkv~~d~~~~k~yL~CdYNRDgDSYRSPwSNkY~P~l~d 80 (258)
+||||||||||||++||+||++||+|+|+||+||||+|||||||++|+++||+||+||||||||||||||||+||||++|
T Consensus 6 ~d~aLdL~RRLpP~~ie~nl~~l~~L~Pdl~edLLssVDqPLki~~d~~~~k~yL~CdYNRDgDSYRSPwSN~Y~P~~~d 85 (244)
T 3aa0_B 6 LDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSNKYDPPLED 85 (244)
T ss_dssp HHHHHHHHTTSCGGGHHHHHHHHHHHCGGGHHHHHHHSCCCCEEEEETTTTEEEEECGGGEETTEEECTTTCCEESCCSS
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhChHHHHHHHhccCCcceEeeccccCCeeeeecccCCCccccCCCCCCcCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhhhcCCceeEEEeecCCCCeeEEEEEEecCCCCcCCCCCCCCCccceeeEEEEEee
Q 025106 81 ALYPPAELRKLEIEANEVFAIYRDQYYEGGISSVYMWEDDNEGFVACFLIKKDGSKTAQGRRGHLEEGAWDAIHVIEVAP 160 (258)
Q Consensus 81 g~~PS~~LR~LEi~aN~~Fd~Yr~lYYeGGvSSVYlWdld~~gFag~vLiKK~~~~s~~~~~~~~~~G~WDSIHV~EV~~ 160 (258)
|++||++||+||++||++||+||+||||||||||||||+| +||||||||||+++++++ .+|+|||||||||++
T Consensus 86 g~~PS~~LR~LEi~aN~~Fd~Yr~lYyeGGvSSVYlWdld-~gFag~vLiKK~~~~~~~------~~G~WdSiHV~Ev~~ 158 (244)
T 3aa0_B 86 GAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVYLWDLD-HGFAGVILIKKAGDGSKK------IKGCWDSIHVVEVQE 158 (244)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEEEEET-TEEEEEEEEEEECCTTSS------EEEEEEEEEEEEEEE
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEEecC-CCceEEEEEEeccCcccc------cccceeeeeEEEEee
Confidence 9999999999999999999999999999999999999999 589999999999887655 679999999999986
Q ss_pred c-CCceeEEEEeeEEEEEeeeCCCCcceeeecceeeeeecccccccc--chhhhhhhHHHHHHHHHHhhhhhhhhccchH
Q 025106 161 E-EEGIARYCLTSTVMLSLTTDHESSGTFSLSGSIRRQMNMDLSVSE--GHLCNMGKMIEEMEGKLRNSLDQVYFGKTKE 237 (258)
Q Consensus 161 ~-~~~~~~YklTSTvmL~l~~~~~~~g~~~LsGsltRq~e~~~~~~~--~Hi~NiG~mIEdmE~~mR~~L~~VYf~Ktkd 237 (258)
. ++++|||||||||||+|++++++.|.|+|||+||||+|+++++.+ +||+|||+|||+||++||++|++||||||||
T Consensus 159 ~~s~~~a~YklTSTvml~l~~~~~~~g~~~LsGsltRq~E~~~~v~~~~~Hi~NiG~mIEdmE~~~R~~L~~VYf~Ktkd 238 (244)
T 3aa0_B 159 KSSGRTAHYKLTSTVMLWLQTNKTGSGTMNLGGSLTRQMEKDETVSDSSPHIANIGRLVEDMENKIRSTLNEIYFGKTKD 238 (244)
T ss_dssp CTTSSEEEEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred ccCCCceeEEEeeEEEEEeccCCCCcccEecceeeeehhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4 568899999999999999998889999999999999999999988 8999999999999999999999999999999
Q ss_pred hhcccC
Q 025106 238 MVCTLR 243 (258)
Q Consensus 238 Iv~~lR 243 (258)
||++||
T Consensus 239 iv~~lR 244 (244)
T 3aa0_B 239 IVNGLR 244 (244)
T ss_dssp HHHHHC
T ss_pred HHHhhC
Confidence 999998
No 4
>3aa0_A F-actin-capping protein subunit alpha-1; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Gallus gallus} PDB: 2kz7_A 1izn_A 3aa1_A* 3aa6_A 3aa7_A* 3aaa_A 3aae_A 3lk2_A 3lk3_A 3lk4_A 2kxp_A
Probab=100.00 E-value=2e-57 Score=414.60 Aligned_cols=230 Identities=16% Similarity=0.264 Sum_probs=207.2
Q ss_pred ChhHhhhhhcCCcccHHHHHHHHHccCcc---hhHHHhhcC-----CC--ceeeeeecccCceeeecccCCCC-CCCCCC
Q 025106 1 MEAAMGLMRRMPPKHSETALSALLSLLPD---HSSDLLSQV-----DQ--PLQVLFDEESGKEFILCEYNRDA-DSYRSP 69 (258)
Q Consensus 1 ~d~aLdLlRRlpP~~ie~nl~~l~~L~Pd---l~edLLssV-----Dq--PLkv~~d~~~~k~yL~CdYNRDg-DSYRSP 69 (258)
+++|++||||+||.++++++++|+.|+|+ |.++|++++ || ||+| +.++++||+|+||||| ++|+.|
T Consensus 14 ~~ia~~ll~~aPPge~~~v~~Dl~~L~~dd~ll~~~l~~a~~~yn~dq~~pl~v---~~~~~~~li~~yn~~~~~~Y~dp 90 (286)
T 3aa0_A 14 VRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKI---EGYDDQVLITEHGDLGNGRFLDP 90 (286)
T ss_dssp HHHHHHHHHTCCTTCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHHHTTCEECC---TTSSSCEECCGGGEEETTEEEET
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcceeEEe---cCCCCcEEEEeccccCCCceeCc
Confidence 37899999999999999999999999998 889999999 99 9999 6788999999999998 899999
Q ss_pred CCCCCC---CC---CCC--CCCCChHHHHHHHHHHHHHHHHHHhhhcCCceeEEEeecCC-CCeeEEEEEEecCCCCcCC
Q 025106 70 WSNKYH---PP---LED--ALYPPAELRKLEIEANEVFAIYRDQYYEGGISSVYMWEDDN-EGFVACFLIKKDGSKTAQG 140 (258)
Q Consensus 70 wSNkY~---P~---l~d--g~~PS~~LR~LEi~aN~~Fd~Yr~lYYeGGvSSVYlWdld~-~gFag~vLiKK~~~~s~~~ 140 (258)
||++|+ |. ..| +..||+.||++|+++|++|+.|+++||+||+||||+||+|+ ++||+||++||- ++.
T Consensus 91 ~s~~~f~~Dh~~~~~~d~~~~~ps~~l~~~r~~~~~~l~~Y~~~~Y~~g~~sVY~~d~e~~~~~a~~I~~~k~-~~~--- 166 (286)
T 3aa0_A 91 RNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQF-QPK--- 166 (286)
T ss_dssp TTTEEEEEETTTTEEEEEEECCCCCTTHHHHHHHHHHHHHHHHHHSSSCEEEEEEEEETTEEEEEEEEEEEEE-EGG---
T ss_pred ccCceEEeecccceeccCCCCCCchhhHHHHHHHHHHHHHHHHHHcCCCceEEEecccCCCceEEEEEEEecc-CCc---
Confidence 999987 64 233 45899999999999999999999999999999999999885 269999999995 322
Q ss_pred CCCCCCCccceeeEEEEEeecCCceeEEEEeeEEEEEeeeCCCCcceeeecceeeeeecccccccc--chhhhhhhHHHH
Q 025106 141 RRGHLEEGAWDAIHVIEVAPEEEGIARYCLTSTVMLSLTTDHESSGTFSLSGSIRRQMNMDLSVSE--GHLCNMGKMIEE 218 (258)
Q Consensus 141 ~~~~~~~G~WDSIHV~EV~~~~~~~~~YklTSTvmL~l~~~~~~~g~~~LsGsltRq~e~~~~~~~--~Hi~NiG~mIEd 218 (258)
+.-.|+|+|||||||.+ . .|+||++|++.+.--.+ |.+.|.+ +||.++++++.+ .|+.|||+|||+
T Consensus 167 ---nfw~G~W~Si~~~~v~~-~----~~~l~G~i~v~vHY~Ed--GNV~L~~--~k~~~~~~~~~~~~~~a~~i~~~Ie~ 234 (286)
T 3aa0_A 167 ---NFWNGRWRSEWKFTITP-P----TAQVAAVLKIQVHYYED--GNVQLVS--HKDIQDSVQVSSDVQTAKEFIKIIEN 234 (286)
T ss_dssp ---GTEEEEEEEEEEEEEET-T----EEEEEEEEEEEEEECTT--EEEEEEE--EEEEEEEEECCSHHHHHHHHHHHHHH
T ss_pred ---cccCceeeeEEEEEecc-c----cceEEEEEEEEEEEecC--ceEEEee--ccccccccccCChHHHHHHHHHHHHH
Confidence 23679999999999983 1 59999999999977655 8899998 899999998877 899999999999
Q ss_pred HHHHHHhhhhhhhhccchHhhcccCCCcccc
Q 025106 219 MEGKLRNSLDQVYFGKTKEMVCTLRPPSEVI 249 (258)
Q Consensus 219 mE~~mR~~L~~VYf~KtkdIv~~lRs~~~~~ 249 (258)
||+++|+.|+++||+|++++++.||...+++
T Consensus 235 ~E~~~~~~L~e~y~~ls~~~fk~LRR~LPvt 265 (286)
T 3aa0_A 235 AENEYQTAISENYQTMSDTTFKALRRQLPVT 265 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHCCSSCTT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhccCCcc
Confidence 9999999999999999999999999987775
No 5
>4akr_A F-actin-capping protein subunit alpha; actin-binding protein; 2.20A {Dictyostelium discoideum}
Probab=98.84 E-value=4.9e-08 Score=89.32 Aligned_cols=220 Identities=18% Similarity=0.241 Sum_probs=150.7
Q ss_pred HhhhhhcCCcccHHHHHHHHHccCcc---hhHHHhhcC-----CC--ceeeeeecccCceeeecccCCCCCCCCCCCCCC
Q 025106 4 AMGLMRRMPPKHSETALSALLSLLPD---HSSDLLSQV-----DQ--PLQVLFDEESGKEFILCEYNRDADSYRSPWSNK 73 (258)
Q Consensus 4 aLdLlRRlpP~~ie~nl~~l~~L~Pd---l~edLLssV-----Dq--PLkv~~d~~~~k~yL~CdYNRDgDSYRSPwSNk 73 (258)
|-+++..=||-++.+-+++|..|.++ +-+.+...+ +| |+++- |.+.|.|.||+-|+ |+
T Consensus 11 ~~~fl~~aPPGE~~eV~~Dlr~l~~~d~~~~~~~~~a~~~Yn~~q~~~v~~~-----g~~viis~~n~l~~-------~r 78 (281)
T 4akr_A 11 ATNFLLNAPPCEFMEVVSDVRALLPSESLLNASAGSTFREYNTSQMVSVQTS-----KGSALITKEGEISN-------NE 78 (281)
T ss_dssp HHHHHHTCCTTCHHHHHHHHHTTCSCTTTTTTTHHHHHHHHHHHHTCEEEET-----TEEEECCSTTEEET-------TE
T ss_pred HHHHHHcCCCchHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHccEEEEeC-----CCcEEEeeccccCC-------Ce
Confidence 66788888999999999999999975 333333222 22 55442 33499999998665 45
Q ss_pred CCCCCC--------------C--CCC--CChHHHHHHHHHHHHHHHHHHhhhcCCceeEEEeecCC-CCeeEEEEEEecC
Q 025106 74 YHPPLE--------------D--ALY--PPAELRKLEIEANEVFAIYRDQYYEGGISSVYMWEDDN-EGFVACFLIKKDG 134 (258)
Q Consensus 74 Y~P~l~--------------d--g~~--PS~~LR~LEi~aN~~Fd~Yr~lYYeGGvSSVYlWdld~-~gFag~vLiKK~~ 134 (258)
|+-|-. | ..- |.+.+.++=.....++..|.+-+|-+|+++||-=..++ ..++.|+.=.|-
T Consensus 79 y~Dp~~k~sF~~DHl~~~a~d~~~~~~~~~~~~e~~R~al~~~l~~Yv~~hYp~g~~~Vy~~~~~~~~~l~i~I~~~k~- 157 (281)
T 4akr_A 79 YLDPKNKQVITYDHIKQEVTGERSASGEIEQDIEQYRAAFDEEATKYCNEYYPNGVSAVYGTKVSEGIKITVCISTCIY- 157 (281)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEECSSCSCGGGHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEEEEEE-
T ss_pred EEccCCCeEEEEeccCCEEcCcccccccCccchHHHHHHHHHHHHHHHHhhCCCCcEEEecccCCCCcEEEEEEEeCcc-
Confidence 543221 0 111 44567777788999999999999999999999755542 126655554443
Q ss_pred CCCcCCCCCCCCCccceeeEEEEEeecCCceeEEEEeeEEEEEeeeCCCCcceeeecceeeeeecccccccc--chhhhh
Q 025106 135 SKTAQGRRGHLEEGAWDAIHVIEVAPEEEGIARYCLTSTVMLSLTTDHESSGTFSLSGSIRRQMNMDLSVSE--GHLCNM 212 (258)
Q Consensus 135 ~~s~~~~~~~~~~G~WDSIHV~EV~~~~~~~~~YklTSTvmL~l~~~~~~~g~~~LsGsltRq~e~~~~~~~--~Hi~Ni 212 (258)
++.+ .-.|.|.|.=.|.|.+.++ +-.++.+|-+.+--=.+ |.+.|..+ +..+.+.++++ .--.+|
T Consensus 158 np~N------FwnGrWrS~w~~~~~~~~~---~l~~~G~I~V~vHYyED--GNVqL~s~--k~~~~s~~~~~~~~~a~~i 224 (281)
T 4akr_A 158 KPNA------FYSGRWRSVWTCTFKPGSG---NVTSNGKVQVNVHYFED--GNVQLNTV--TQKQTTSPSADAQSTAVNA 224 (281)
T ss_dssp EGGG------TEEEEEEEEEEEEECTTSS---EEEEEEEEEEEEEECSS--EEEEEEEE--EEEEEEEECCSHHHHHHHH
T ss_pred Cccc------ccCCceEEEEEEEecCCCC---eEEECCEEEEEEEEeec--ceEEEEec--cccccccccCCchhhHHHH
Confidence 3322 3569999999999874332 33333877776643333 55655433 33333444443 456689
Q ss_pred hhHHHHHHHHHHhhhhhhhhccchHhhcccCCCcccc
Q 025106 213 GKMIEEMEGKLRNSLDQVYFGKTKEMVCTLRPPSEVI 249 (258)
Q Consensus 213 G~mIEdmE~~mR~~L~~VYf~KtkdIv~~lRs~~~~~ 249 (258)
-++|++.|+++...|++-|..-....+..||..-++.
T Consensus 225 v~~I~~~E~~~q~~l~~~~~~ls~~tfK~LRR~LPvT 261 (281)
T 4akr_A 225 FKAIGKAELNLHTALDNNYSTMGDTTFKALRRALPIN 261 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCSSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHhhccCCCC
Confidence 9999999999999999999999999999999776655
No 6
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=49.75 E-value=2.7 Score=32.83 Aligned_cols=19 Identities=32% Similarity=0.658 Sum_probs=13.9
Q ss_pred hhhcCCcccHHHHHHHHHc
Q 025106 7 LMRRMPPKHSETALSALLS 25 (258)
Q Consensus 7 LlRRlpP~~ie~nl~~l~~ 25 (258)
++|||||...|+.+-..++
T Consensus 13 VIRrLPP~Ltee~F~~~l~ 31 (97)
T 2l08_A 13 VIRRLPPGLTKEQLEEQLR 31 (97)
T ss_dssp EEECCCSCSCHHHHTTTTS
T ss_pred EEeCCCCCCCHHHHHHHhC
Confidence 4799999988887644433
No 7
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=39.64 E-value=7.3 Score=29.74 Aligned_cols=19 Identities=32% Similarity=0.681 Sum_probs=16.3
Q ss_pred hhhcCCcccHHHHHHHHHc
Q 025106 7 LMRRMPPKHSETALSALLS 25 (258)
Q Consensus 7 LlRRlpP~~ie~nl~~l~~ 25 (258)
.+|||||.-.|+.+-..++
T Consensus 5 VIRrLPP~LteeeF~~~l~ 23 (91)
T 1uw4_A 5 VIRRLPPTLTKEQLQEHLQ 23 (91)
T ss_dssp EEEEECTTCCHHHHHHHHC
T ss_pred EEeCCCCCCCHHHHHHHhc
Confidence 4799999999999887766
No 8
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=38.78 E-value=11 Score=26.70 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=24.0
Q ss_pred CCcccHHHHHHHHHccCcchhHHHhhcC
Q 025106 11 MPPKHSETALSALLSLLPDHSSDLLSQV 38 (258)
Q Consensus 11 lpP~~ie~nl~~l~~L~Pdl~edLLssV 38 (258)
=||.-.|+.+..|.+++|++..+.+.+|
T Consensus 4 ~~~~~~ee~l~~L~emFP~ld~~~I~~v 31 (59)
T 1wgl_A 4 GSSGCSEEDLKAIQDMFPNMDQEVIRSV 31 (59)
T ss_dssp CSSSSCHHHHHHHHHHCSSSCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHCCCCCHHHHHHH
Confidence 3677889999999999999998887765
No 9
>1xe0_A Nucleophosmin; drosophila nucleoplasmin-like protein (DNLP), nucleoplasmin (NP), histone binding, X-RAY crystallography, chaperone; 1.70A {Xenopus laevis} SCOP: b.121.3.1 PDB: 1xb9_A 2p1b_A
Probab=36.44 E-value=1.5e+02 Score=23.48 Aligned_cols=37 Identities=16% Similarity=0.243 Sum_probs=24.2
Q ss_pred EEEeecCCCCeeEEEEEEecCCCCcCCCCCCCCCccceeeEEEEEee
Q 025106 114 VYMWEDDNEGFVACFLIKKDGSKTAQGRRGHLEEGAWDAIHVIEVAP 160 (258)
Q Consensus 114 VYlWdld~~gFag~vLiKK~~~~s~~~~~~~~~~G~WDSIHV~EV~~ 160 (258)
-|-|+.|++....-..||-..=+. |.=|-.|||||..
T Consensus 20 ~~~f~~d~d~~eh~L~l~~~~LG~----------~AKdE~nvVEve~ 56 (114)
T 1xe0_A 20 EYSFKVEDDENEHQLSLRTVSLGA----------SAKDELHVVEAEG 56 (114)
T ss_dssp EEEECCCSCSSCEEEEEEEEEECT----------TCCSSCEEEEEEE
T ss_pred ceEEcCCCCCcccEEEEEEEEcCC----------CcCCCceEEEEEe
Confidence 678888766566677777664321 1126789999974
No 10
>3t30_B Nucleoplasmin-2; beta-barrel jelly roll topology, histone chaperone, H2A-H2B H3-H4 tetramer, oocytes and early embryos, chaperone; 1.90A {Homo sapiens} SCOP: b.121.3.0
Probab=32.60 E-value=70 Score=25.32 Aligned_cols=10 Identities=30% Similarity=0.846 Sum_probs=8.4
Q ss_pred eeeEEEEEee
Q 025106 151 DAIHVIEVAP 160 (258)
Q Consensus 151 DSIHV~EV~~ 160 (258)
|-.|||||..
T Consensus 45 dE~nvVEve~ 54 (110)
T 3t30_B 45 EEMHRVEILP 54 (110)
T ss_dssp SSCEEEEEEC
T ss_pred cceeEEEEEe
Confidence 7889999973
No 11
>3a4c_A DNA replication factor CDT1; alpha-beta structure, cell cycle, DNA- binding, nucleus, phosphoprotein, proto-oncogene, UBL conjugation; HET: DNA; 1.89A {Mus musculus} PDB: 2rqq_A*
Probab=29.07 E-value=19 Score=28.70 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=20.0
Q ss_pred cCCcccHHHHHHHHHccCcchh
Q 025106 10 RMPPKHSETALSALLSLLPDHS 31 (258)
Q Consensus 10 RlpP~~ie~nl~~l~~L~Pdl~ 31 (258)
.|.|+.+|++|.-|++|+||-.
T Consensus 50 ~ls~~EmE~hl~lL~ellPdWl 71 (106)
T 3a4c_A 50 ALSPGEMEKHLVLLAELLPDWL 71 (106)
T ss_dssp SCCHHHHHHHHHHHHHHCTTTE
T ss_pred cCCHHHHHHHHHHHHHhCcchh
Confidence 4799999999999999999874
No 12
>3onr_A Protein transport protein SECE2; calcium dodecin, calcium binding protein, dodecamer, imuuno antigen, metal binding protein; 1.80A {Mycobacterium tuberculosis}
Probab=28.88 E-value=66 Score=23.81 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=21.7
Q ss_pred eeEEEEEee-----cCCceeEEEEeeEEEEEeee
Q 025106 152 AIHVIEVAP-----EEEGIARYCLTSTVMLSLTT 180 (258)
Q Consensus 152 SIHV~EV~~-----~~~~~~~YklTSTvmL~l~~ 180 (258)
-|..|||.+ +.|+.++||++-.|-+.++.
T Consensus 35 ni~~~eV~e~~~~v~dgkv~~yqv~lKV~F~le~ 68 (72)
T 3onr_A 35 DIRVARVIEQDMAVDSAGKITYRIKLEVSFKMRP 68 (72)
T ss_dssp CCCEEEEEEEEEEECTTCCEEEEEEEEEEEECCT
T ss_pred CCeEEEEEEEEEEEeCCcEEEEEEEEEEEEEEcC
Confidence 466677765 34677999999888887764
No 13
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=27.96 E-value=6 Score=28.71 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=21.6
Q ss_pred CcchhHHHhhcCCCceeeeeecccC
Q 025106 27 LPDHSSDLLSQVDQPLQVLFDEESG 51 (258)
Q Consensus 27 ~Pdl~edLLssVDqPLkv~~d~~~~ 51 (258)
.|.-.-|||+|||.|=-+.+|++.|
T Consensus 18 pP~aI~DLLksvds~eV~~YC~~kG 42 (60)
T 1ng7_A 18 PPECINDLLQAVDSQEVRDYCEKKG 42 (60)
T ss_dssp SSTTTHHHHHHHCCHHHHHHHHHHT
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHCC
Confidence 4788899999999998888998866
No 14
>2yiz_A Dodecin; flavoprotein, flavin binding protein, protein-engineering, P storage protein; HET: COA FMN GOL; 1.70A {Mycobacterium tuberculosis} PDB: 3oqt_A 2yj0_A*
Probab=27.28 E-value=86 Score=22.97 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=21.9
Q ss_pred ceeeEEEEEee-----cCCceeEEEEeeEEEEEee
Q 025106 150 WDAIHVIEVAP-----EEEGIARYCLTSTVMLSLT 179 (258)
Q Consensus 150 WDSIHV~EV~~-----~~~~~~~YklTSTvmL~l~ 179 (258)
-+-|..|||.+ +.|+.++||++-.|-+.|+
T Consensus 33 l~ni~~~eV~e~~~~v~dgkv~~yqv~lkv~F~le 67 (69)
T 2yiz_A 33 MRALDWFEVQSIRGHLVDGAVAHFQVTMKVGFRLE 67 (69)
T ss_dssp CCCEEEEEEEEEEEEEETTEEEEEEEEEEEEEECC
T ss_pred ccCCeEEEEEEEEEEEeCCcEEEEEEEEEEEEEEC
Confidence 34577888876 2466699999988877654
No 15
>2vxa_A Dodecin; flavoprotein, flavin, riboflavin, lumichrome, archaea; HET: RBF; 2.60A {Halorhodospira halophila}
Probab=27.12 E-value=98 Score=22.84 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=22.0
Q ss_pred eeeEEEEEee-----cCCceeEEEEeeEEEEEeee
Q 025106 151 DAIHVIEVAP-----EEEGIARYCLTSTVMLSLTT 180 (258)
Q Consensus 151 DSIHV~EV~~-----~~~~~~~YklTSTvmL~l~~ 180 (258)
+-|..|||.+ +.|+.++||++-.|-+.+..
T Consensus 35 ~ni~~~eV~e~r~~v~dgki~~yqV~lKV~F~le~ 69 (72)
T 2vxa_A 35 RHLRWFEVVDTRGHIEGGRVNHWQVTVKVGFTLEG 69 (72)
T ss_dssp CCEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEC-
T ss_pred cCCeEEEEEEEEEEEeCCcEEEEEEEEEEEEEECC
Confidence 4577888876 24666999999888777653
No 16
>2cc6_A VNG1446H, dodecin; flavoprotein, flavin, flavin-like ligands; HET: LUM; 1.27A {Halobacterium salinarum} SCOP: d.230.2.1 PDB: 2cc7_A* 2cc8_A* 2cc9_A 2ccb_A* 2ccc_A* 2cif_A* 2cjc_A* 1mog_A* 2vx9_A* 2cie_A* 2vkf_A* 2vkg_A*
Probab=26.54 E-value=90 Score=22.82 Aligned_cols=30 Identities=20% Similarity=0.143 Sum_probs=22.2
Q ss_pred ceeeEEEEEee-----cCCceeEEEEeeEEEEEee
Q 025106 150 WDAIHVIEVAP-----EEEGIARYCLTSTVMLSLT 179 (258)
Q Consensus 150 WDSIHV~EV~~-----~~~~~~~YklTSTvmL~l~ 179 (258)
-+-|..|||.+ +.|+.++||++-.|-+.|.
T Consensus 31 l~ni~~~eV~e~~~~v~dgkv~~yqv~lKV~F~le 65 (68)
T 2cc6_A 31 LDNVVWAEVVDQGVEIGAVEERTYQTEVQVAFELD 65 (68)
T ss_dssp CSCEEEEEEEEEEEECTTSSSCEEEEEEEEEEECC
T ss_pred ccCCeEEEEEEEEEEEeCCcEEEEEEEEEEEEEEC
Confidence 34577888876 2466699999988877765
No 17
>2ux9_A Dodecin; flavoprotein; HET: FMN COA; 1.4A {Thermus thermophilus} SCOP: d.230.2.1 PDB: 2cz8_A* 2deg_A 2deh_A 2dev_A 2v21_A* 2v18_A* 2vyx_A* 2v19_A*
Probab=25.31 E-value=1e+02 Score=22.63 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=21.9
Q ss_pred ceeeEEEEEee-----cCCceeEEEEeeEEEEEee
Q 025106 150 WDAIHVIEVAP-----EEEGIARYCLTSTVMLSLT 179 (258)
Q Consensus 150 WDSIHV~EV~~-----~~~~~~~YklTSTvmL~l~ 179 (258)
-+-|..|||.+ +.|+.++||++--|-+.|+
T Consensus 33 l~ni~~~eV~e~~~~v~dgkv~~yqv~lkV~F~le 67 (69)
T 2ux9_A 33 LRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFALE 67 (69)
T ss_dssp CCCEEEEEEEEEEEEEETTEEEEEEEEEEEEEECC
T ss_pred ccCCeEEEEEEEEEEEeCCcEEEEEEEEEEEEEEC
Confidence 34577888876 2466699999988877654
No 18
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=23.29 E-value=12 Score=27.64 Aligned_cols=59 Identities=19% Similarity=0.168 Sum_probs=39.1
Q ss_pred cCCcccHHHHHHHHHccCcchh-HHHhhcCCCceeeeeecccCceeeecccCCCCCCCCCCCCCC
Q 025106 10 RMPPKHSETALSALLSLLPDHS-SDLLSQVDQPLQVLFDEESGKEFILCEYNRDADSYRSPWSNK 73 (258)
Q Consensus 10 RlpP~~ie~nl~~l~~L~Pdl~-edLLssVDqPLkv~~d~~~~k~yL~CdYNRDgDSYRSPwSNk 73 (258)
|+|-+.+...|..+..=-|-.+ .+|-+..+||..-.+.-=.. .|+||+-|. |+.=|.=|
T Consensus 3 R~~~~~l~d~lF~~Fek~~yw~lK~L~~~t~QP~~yLKeiL~~----Ia~~~k~g~-~~~~weLK 62 (69)
T 1bby_A 3 RADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKE----IGVQNVKGI-HKNTWELK 62 (69)
T ss_dssp HHHHHHHHHHHHHHHHHCSCBCHHHHHHHCCSCHHHHHHHHHH----HCCCBCCTT-CCCBBCCC
T ss_pred cCCHHHHHHHHHHHHhhcCCCcHHHHHHHHcCcHHHHHHHHHH----HHHHHcCCC-CCCeeeCc
Confidence 5666667766666666556444 77888889987544432211 399999997 67777644
Done!