Query 025107
Match_columns 257
No_of_seqs 209 out of 2356
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 02:44:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025107.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025107hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01564 Spermine_synth: Sperm 100.0 2.6E-47 5.7E-52 332.3 22.9 222 30-256 1-226 (246)
2 PLN02823 spermine synthase 100.0 9.5E-47 2.1E-51 341.1 26.7 252 3-255 3-256 (336)
3 PRK00536 speE spermidine synth 100.0 3.2E-45 6.8E-50 319.9 21.7 202 30-252 1-202 (262)
4 PLN02366 spermidine synthase 100.0 1E-44 2.2E-49 324.8 25.3 220 25-249 12-235 (308)
5 PRK00811 spermidine synthase; 100.0 9.3E-45 2E-49 322.6 24.4 218 29-251 3-221 (283)
6 COG0421 SpeE Spermidine syntha 100.0 1.7E-44 3.7E-49 318.6 22.2 221 28-253 2-222 (282)
7 TIGR00417 speE spermidine synt 100.0 4.3E-41 9.4E-46 297.3 24.0 217 31-252 1-217 (270)
8 PRK01581 speE spermidine synth 100.0 2.2E-40 4.8E-45 299.0 22.6 242 5-255 50-302 (374)
9 COG4262 Predicted spermidine s 100.0 1.7E-36 3.8E-41 268.9 15.6 210 41-255 229-441 (508)
10 PRK03612 spermidine synthase; 100.0 1.3E-35 2.8E-40 283.7 22.2 220 31-255 223-449 (521)
11 KOG1562 Spermidine synthase [A 100.0 3.6E-36 7.9E-41 260.7 9.9 230 22-256 36-273 (337)
12 PRK04457 spermidine synthase; 100.0 5.8E-27 1.3E-31 206.3 20.4 183 50-245 9-198 (262)
13 COG2521 Predicted archaeal met 99.7 7E-17 1.5E-21 136.7 14.7 170 70-246 102-274 (287)
14 PF12847 Methyltransf_18: Meth 99.6 7.4E-16 1.6E-20 117.5 8.6 110 102-219 1-111 (112)
15 PF13659 Methyltransf_26: Meth 99.6 1.8E-14 4E-19 110.7 10.0 111 104-219 2-115 (117)
16 COG4123 Predicted O-methyltran 99.5 1.3E-13 2.8E-18 119.4 14.1 132 99-241 41-185 (248)
17 PF05175 MTS: Methyltransferas 99.5 4.4E-14 9.5E-19 116.6 9.6 130 102-249 31-161 (170)
18 PRK00107 gidB 16S rRNA methylt 99.5 1.1E-12 2.4E-17 110.0 14.7 117 101-238 44-160 (187)
19 PRK00121 trmB tRNA (guanine-N( 99.5 1.4E-12 3E-17 110.7 15.4 129 102-241 40-172 (202)
20 TIGR03533 L3_gln_methyl protei 99.5 5.3E-12 1.1E-16 112.5 19.1 113 102-220 121-252 (284)
21 TIGR00091 tRNA (guanine-N(7)-) 99.5 1.9E-12 4.1E-17 109.1 15.0 129 102-241 16-148 (194)
22 COG4122 Predicted O-methyltran 99.5 1.8E-12 3.9E-17 110.7 13.9 105 101-218 58-165 (219)
23 TIGR00138 gidB 16S rRNA methyl 99.4 2.1E-12 4.7E-17 107.7 13.9 103 102-221 42-144 (181)
24 PLN02781 Probable caffeoyl-CoA 99.4 1.2E-12 2.5E-17 113.6 11.2 104 101-217 67-176 (234)
25 TIGR02469 CbiT precorrin-6Y C5 99.4 1.5E-12 3.3E-17 100.5 10.6 105 101-219 18-122 (124)
26 PF01596 Methyltransf_3: O-met 99.4 5.8E-13 1.2E-17 113.2 8.6 105 101-218 44-154 (205)
27 PF13847 Methyltransf_31: Meth 99.4 8.9E-13 1.9E-17 106.5 8.7 106 102-219 3-110 (152)
28 PRK08287 cobalt-precorrin-6Y C 99.4 1.4E-11 2.9E-16 103.0 15.6 118 101-241 30-147 (187)
29 PRK15128 23S rRNA m(5)C1962 me 99.4 1E-11 2.2E-16 115.3 16.3 140 102-249 220-368 (396)
30 PRK00377 cbiT cobalt-precorrin 99.4 2.2E-11 4.8E-16 102.8 16.7 123 100-241 38-161 (198)
31 PLN02476 O-methyltransferase 99.4 2.7E-12 5.8E-17 113.5 11.5 105 101-218 117-227 (278)
32 COG1092 Predicted SAM-dependen 99.4 5.3E-12 1.1E-16 116.4 13.9 138 102-246 217-362 (393)
33 COG2813 RsmC 16S RNA G1207 met 99.4 8.2E-12 1.8E-16 110.5 14.1 128 103-248 159-286 (300)
34 PRK15001 SAM-dependent 23S rib 99.4 6.5E-12 1.4E-16 115.7 13.9 131 103-247 229-359 (378)
35 PRK14966 unknown domain/N5-glu 99.4 4.5E-11 9.7E-16 110.8 18.4 177 56-250 210-406 (423)
36 PRK11805 N5-glutamine S-adenos 99.4 2.1E-11 4.5E-16 109.9 15.4 112 103-220 134-264 (307)
37 COG2242 CobL Precorrin-6B meth 99.4 2.8E-11 6E-16 100.2 14.8 129 90-241 23-151 (187)
38 PRK14121 tRNA (guanine-N(7)-)- 99.4 2E-11 4.3E-16 112.4 15.4 130 101-241 121-251 (390)
39 PRK10909 rsmD 16S rRNA m(2)G96 99.4 5.9E-11 1.3E-15 100.5 16.8 145 59-220 12-160 (199)
40 TIGR03534 RF_mod_PrmC protein- 99.3 8.1E-11 1.8E-15 102.1 17.9 136 101-250 86-242 (251)
41 PRK11036 putative S-adenosyl-L 99.3 1.2E-11 2.7E-16 108.3 12.6 106 101-218 43-148 (255)
42 COG2890 HemK Methylase of poly 99.3 4.1E-11 8.9E-16 106.6 16.0 141 69-220 80-239 (280)
43 COG2226 UbiE Methylase involve 99.3 2.8E-11 6.1E-16 104.7 14.5 106 101-218 50-155 (238)
44 TIGR00536 hemK_fam HemK family 99.3 5.6E-11 1.2E-15 105.9 16.8 112 104-221 116-246 (284)
45 PRK09328 N5-glutamine S-adenos 99.3 9.7E-11 2.1E-15 103.2 17.2 135 101-249 107-262 (275)
46 PRK14103 trans-aconitate 2-met 99.3 1.2E-11 2.6E-16 108.3 11.2 99 101-219 28-126 (255)
47 KOG2352 Predicted spermine/spe 99.3 1.7E-12 3.7E-17 120.7 6.0 155 87-250 273-443 (482)
48 PRK09489 rsmC 16S ribosomal RN 99.3 2.3E-11 5E-16 111.0 13.2 128 102-248 196-323 (342)
49 COG2519 GCD14 tRNA(1-methylade 99.3 2.1E-11 4.6E-16 105.2 12.0 125 101-248 93-219 (256)
50 PRK07402 precorrin-6B methylas 99.3 6.2E-11 1.3E-15 99.8 14.5 104 101-219 39-142 (196)
51 PLN02589 caffeoyl-CoA O-methyl 99.3 1.7E-11 3.7E-16 107.0 11.3 105 101-218 78-189 (247)
52 PRK01544 bifunctional N5-gluta 99.3 8.1E-11 1.8E-15 112.7 17.0 113 102-220 138-270 (506)
53 TIGR03704 PrmC_rel_meth putati 99.3 8.9E-11 1.9E-15 102.9 15.7 123 103-240 87-230 (251)
54 TIGR02752 MenG_heptapren 2-hep 99.3 6.2E-11 1.4E-15 101.9 14.5 107 101-219 44-151 (231)
55 PRK11783 rlmL 23S rRNA m(2)G24 99.3 3.1E-11 6.7E-16 119.8 14.3 116 102-221 538-658 (702)
56 TIGR00406 prmA ribosomal prote 99.3 1.5E-10 3.3E-15 103.3 17.3 130 101-253 158-287 (288)
57 PRK01683 trans-aconitate 2-met 99.3 2.2E-11 4.8E-16 106.6 11.6 101 101-219 30-130 (258)
58 COG4106 Tam Trans-aconitate me 99.3 1.6E-11 3.5E-16 103.4 9.6 110 89-219 20-129 (257)
59 PRK15451 tRNA cmo(5)U34 methyl 99.3 5.7E-11 1.2E-15 103.8 13.4 107 101-218 55-163 (247)
60 TIGR00537 hemK_rel_arch HemK-r 99.3 9.2E-11 2E-15 97.3 14.0 128 101-245 18-161 (179)
61 PF08241 Methyltransf_11: Meth 99.3 5.9E-12 1.3E-16 92.2 6.1 95 107-217 1-95 (95)
62 PLN03075 nicotianamine synthas 99.3 5.7E-11 1.2E-15 105.8 12.8 109 101-219 122-233 (296)
63 PRK00517 prmA ribosomal protei 99.3 2.3E-10 5E-15 100.1 16.4 126 101-255 118-244 (250)
64 PF01209 Ubie_methyltran: ubiE 99.3 1.1E-11 2.4E-16 107.4 7.7 106 101-218 46-152 (233)
65 PLN02244 tocopherol O-methyltr 99.3 3.2E-11 6.9E-16 110.1 11.1 106 101-218 117-222 (340)
66 TIGR00080 pimt protein-L-isoas 99.3 4.3E-11 9.4E-16 102.3 11.2 102 101-220 76-178 (215)
67 PRK14967 putative methyltransf 99.3 2.6E-10 5.6E-15 98.0 16.1 109 101-218 35-158 (223)
68 PF10672 Methyltrans_SAM: S-ad 99.3 5.5E-11 1.2E-15 105.7 12.1 130 101-239 122-256 (286)
69 PRK13944 protein-L-isoaspartat 99.3 4.2E-11 9.1E-16 101.8 10.5 101 102-219 72-173 (205)
70 PLN02233 ubiquinone biosynthes 99.3 5.4E-11 1.2E-15 104.8 11.5 109 101-218 72-181 (261)
71 COG0742 N6-adenine-specific me 99.3 2.9E-10 6.3E-15 94.6 14.9 148 60-220 2-155 (187)
72 PLN02672 methionine S-methyltr 99.2 3.1E-10 6.6E-15 115.8 18.0 141 103-250 119-304 (1082)
73 COG2518 Pcm Protein-L-isoaspar 99.2 7.8E-11 1.7E-15 99.5 11.5 100 101-220 71-170 (209)
74 PRK13942 protein-L-isoaspartat 99.2 7.8E-11 1.7E-15 100.7 11.2 102 101-220 75-177 (212)
75 PRK04266 fibrillarin; Provisio 99.2 2.5E-10 5.4E-15 98.5 13.5 138 101-253 71-214 (226)
76 PLN02396 hexaprenyldihydroxybe 99.2 7.1E-11 1.5E-15 106.9 10.3 104 102-219 131-235 (322)
77 PRK11207 tellurite resistance 99.2 1E-10 2.2E-15 98.8 10.2 103 102-217 30-132 (197)
78 PF03602 Cons_hypoth95: Conser 99.2 8.2E-11 1.8E-15 98.4 9.5 109 101-220 41-154 (183)
79 PF08704 GCD14: tRNA methyltra 99.2 2.7E-10 5.9E-15 99.3 13.0 144 85-249 22-171 (247)
80 PRK11188 rrmJ 23S rRNA methylt 99.2 1.1E-10 2.5E-15 99.5 10.4 128 101-250 50-190 (209)
81 smart00828 PKS_MT Methyltransf 99.2 6.7E-11 1.4E-15 101.3 9.0 104 104-219 1-104 (224)
82 PF13649 Methyltransf_25: Meth 99.2 2.4E-11 5.1E-16 91.4 5.4 96 106-213 1-101 (101)
83 PF02390 Methyltransf_4: Putat 99.2 3.1E-10 6.8E-15 95.8 12.4 126 105-241 20-149 (195)
84 TIGR00740 methyltransferase, p 99.2 2.3E-10 5.1E-15 99.2 12.0 108 101-219 52-161 (239)
85 TIGR00095 RNA methyltransferas 99.2 9E-10 1.9E-14 92.6 14.6 107 102-219 49-159 (189)
86 COG2227 UbiG 2-polyprenyl-3-me 99.2 9.8E-11 2.1E-15 100.4 8.7 103 101-219 58-161 (243)
87 PF08242 Methyltransf_12: Meth 99.2 8E-12 1.7E-16 93.4 1.8 98 107-215 1-99 (99)
88 TIGR00446 nop2p NOL1/NOP2/sun 99.2 1.4E-09 3E-14 96.0 16.2 133 102-244 71-220 (264)
89 PRK14903 16S rRNA methyltransf 99.2 1.2E-09 2.6E-14 102.8 16.1 136 101-245 236-388 (431)
90 TIGR02072 BioC biotin biosynth 99.2 3.4E-10 7.3E-15 97.0 11.4 103 101-219 33-135 (240)
91 PF01135 PCMT: Protein-L-isoas 99.2 1.3E-10 2.7E-15 99.2 8.5 102 101-220 71-173 (209)
92 PF02353 CMAS: Mycolic acid cy 99.2 1.6E-10 3.5E-15 102.4 9.5 105 101-219 61-166 (273)
93 COG2264 PrmA Ribosomal protein 99.2 2.8E-10 6.1E-15 101.2 11.0 131 101-253 161-292 (300)
94 PTZ00098 phosphoethanolamine N 99.2 2.2E-10 4.8E-15 101.0 10.3 105 101-219 51-156 (263)
95 PRK14902 16S rRNA methyltransf 99.2 1.2E-09 2.5E-14 103.3 15.8 115 101-220 249-380 (444)
96 PRK11873 arsM arsenite S-adeno 99.1 3.9E-10 8.5E-15 99.5 11.7 106 101-218 76-182 (272)
97 PRK10258 biotin biosynthesis p 99.1 5.6E-10 1.2E-14 97.4 12.1 99 102-219 42-140 (251)
98 PRK14904 16S rRNA methyltransf 99.1 1.7E-09 3.6E-14 102.2 15.6 115 101-222 249-380 (445)
99 TIGR00438 rrmJ cell division p 99.1 7.1E-10 1.5E-14 92.8 11.0 128 101-250 31-171 (188)
100 PF06325 PrmA: Ribosomal prote 99.1 1.8E-10 4E-15 102.9 7.9 130 100-254 159-288 (295)
101 PRK14968 putative methyltransf 99.1 2.1E-09 4.6E-14 89.0 13.7 112 101-220 22-149 (188)
102 PHA03411 putative methyltransf 99.1 8.9E-10 1.9E-14 97.0 11.6 105 102-218 64-182 (279)
103 TIGR01177 conserved hypothetic 99.1 7.9E-10 1.7E-14 100.5 11.3 111 101-219 181-294 (329)
104 PRK10901 16S rRNA methyltransf 99.1 3.3E-09 7.2E-14 99.7 15.7 114 101-220 243-373 (427)
105 PRK14901 16S rRNA methyltransf 99.1 4.1E-09 8.9E-14 99.3 16.2 114 101-219 251-384 (434)
106 PF05401 NodS: Nodulation prot 99.1 6.2E-10 1.3E-14 93.1 9.4 131 100-249 41-179 (201)
107 TIGR00477 tehB tellurite resis 99.1 8.2E-10 1.8E-14 93.1 10.0 102 102-217 30-131 (195)
108 PLN02490 MPBQ/MSBQ methyltrans 99.1 1.1E-09 2.4E-14 99.8 11.3 134 102-250 113-257 (340)
109 PLN02336 phosphoethanolamine N 99.1 2E-09 4.4E-14 102.3 13.6 105 101-219 265-369 (475)
110 PRK00216 ubiE ubiquinone/menaq 99.1 1.5E-09 3.2E-14 93.1 11.5 107 101-218 50-157 (239)
111 COG2230 Cfa Cyclopropane fatty 99.1 9.4E-10 2E-14 97.1 10.2 105 101-219 71-176 (283)
112 cd02440 AdoMet_MTases S-adenos 99.1 1.7E-09 3.6E-14 78.9 10.1 103 105-218 1-103 (107)
113 PHA03412 putative methyltransf 99.1 1.1E-09 2.5E-14 94.3 10.3 103 102-217 49-160 (241)
114 PRK00312 pcm protein-L-isoaspa 99.1 1.4E-09 3E-14 92.6 10.6 100 101-220 77-176 (212)
115 TIGR01934 MenG_MenH_UbiE ubiqu 99.1 2E-09 4.4E-14 91.3 11.6 104 101-218 38-142 (223)
116 smart00650 rADc Ribosomal RNA 99.1 2.4E-09 5.3E-14 88.1 11.6 101 102-220 13-114 (169)
117 PRK15068 tRNA mo(5)U34 methylt 99.0 2.1E-09 4.6E-14 97.5 12.2 105 101-218 121-225 (322)
118 PRK03522 rumB 23S rRNA methylu 99.0 2.7E-09 5.9E-14 96.4 12.8 105 102-222 173-277 (315)
119 COG0220 Predicted S-adenosylme 99.0 4.2E-09 9.1E-14 90.8 13.2 112 103-219 49-164 (227)
120 PTZ00146 fibrillarin; Provisio 99.0 5.2E-09 1.1E-13 93.1 13.9 138 101-253 131-275 (293)
121 PRK08317 hypothetical protein; 99.0 2.6E-09 5.6E-14 91.3 11.3 106 101-219 18-124 (241)
122 PRK13943 protein-L-isoaspartat 99.0 2.6E-09 5.7E-14 96.7 11.8 101 101-219 79-180 (322)
123 PRK12335 tellurite resistance 99.0 1.3E-09 2.9E-14 97.2 9.8 103 101-217 119-221 (287)
124 KOG1540 Ubiquinone biosynthesi 99.0 3.4E-09 7.4E-14 91.4 11.1 108 101-217 99-212 (296)
125 KOG1270 Methyltransferases [Co 99.0 2.9E-10 6.3E-15 98.4 4.5 101 103-218 90-194 (282)
126 TIGR00563 rsmB ribosomal RNA s 99.0 9E-09 1.9E-13 96.8 14.9 136 101-244 237-389 (426)
127 TIGR02085 meth_trns_rumB 23S r 99.0 4.9E-09 1.1E-13 97.0 12.6 103 102-220 233-335 (374)
128 PRK13168 rumA 23S rRNA m(5)U19 99.0 7E-09 1.5E-13 98.0 13.9 103 102-221 297-402 (443)
129 PRK11705 cyclopropane fatty ac 99.0 2.4E-09 5.2E-14 99.3 10.5 101 101-219 166-267 (383)
130 PRK06922 hypothetical protein; 99.0 2.9E-09 6.2E-14 103.4 11.1 112 102-219 418-537 (677)
131 PRK04338 N(2),N(2)-dimethylgua 99.0 3.5E-09 7.6E-14 98.1 11.2 100 104-219 59-158 (382)
132 TIGR02716 C20_methyl_CrtF C-20 99.0 3.5E-09 7.5E-14 95.2 10.5 105 102-218 149-253 (306)
133 TIGR00452 methyltransferase, p 99.0 6.4E-09 1.4E-13 93.9 11.6 105 101-218 120-224 (314)
134 TIGR01983 UbiG ubiquinone bios 99.0 6.8E-09 1.5E-13 88.7 11.0 105 102-219 45-149 (224)
135 PRK05134 bifunctional 3-demeth 99.0 6.2E-09 1.3E-13 89.7 10.8 104 102-219 48-151 (233)
136 TIGR00479 rumA 23S rRNA (uraci 98.9 1.9E-08 4.2E-13 94.6 14.4 102 102-219 292-396 (431)
137 COG2263 Predicted RNA methylas 98.9 9.9E-09 2.1E-13 85.1 10.7 102 100-218 43-144 (198)
138 PRK11088 rrmA 23S rRNA methylt 98.9 1.2E-08 2.6E-13 90.3 12.0 94 102-219 85-181 (272)
139 TIGR03587 Pse_Me-ase pseudamin 98.9 8.5E-09 1.9E-13 87.6 10.6 133 100-249 41-180 (204)
140 TIGR00308 TRM1 tRNA(guanine-26 98.9 8.7E-09 1.9E-13 95.1 11.4 101 104-219 46-147 (374)
141 PRK05785 hypothetical protein; 98.9 2.4E-08 5.1E-13 86.2 12.9 100 101-222 50-149 (226)
142 KOG2899 Predicted methyltransf 98.9 9.2E-09 2E-13 88.2 10.0 112 102-218 58-208 (288)
143 TIGR03840 TMPT_Se_Te thiopurin 98.9 8.5E-09 1.8E-13 88.2 9.4 110 101-217 33-150 (213)
144 PLN02336 phosphoethanolamine N 98.9 7.7E-09 1.7E-13 98.4 9.9 104 102-218 37-141 (475)
145 KOG1663 O-methyltransferase [S 98.9 2.6E-08 5.6E-13 84.9 11.9 105 101-218 72-182 (237)
146 PRK05031 tRNA (uracil-5-)-meth 98.9 4.3E-08 9.4E-13 90.3 14.1 100 103-220 207-321 (362)
147 TIGR03438 probable methyltrans 98.9 2.2E-08 4.8E-13 90.0 11.9 112 101-220 62-178 (301)
148 KOG4300 Predicted methyltransf 98.9 9.6E-09 2.1E-13 86.2 8.6 105 102-218 76-181 (252)
149 TIGR02143 trmA_only tRNA (urac 98.9 1.7E-07 3.8E-12 86.0 17.6 100 103-220 198-312 (353)
150 TIGR02021 BchM-ChlM magnesium 98.9 2.6E-08 5.7E-13 85.1 11.4 102 101-217 54-156 (219)
151 PF02475 Met_10: Met-10+ like- 98.9 4.9E-09 1.1E-13 88.7 6.3 100 101-216 100-199 (200)
152 PF13489 Methyltransf_23: Meth 98.8 1E-08 2.2E-13 82.4 7.4 96 100-219 20-115 (161)
153 PF03848 TehB: Tellurite resis 98.8 2.1E-08 4.5E-13 84.3 8.7 104 101-218 29-132 (192)
154 KOG2904 Predicted methyltransf 98.8 8.7E-08 1.9E-12 83.6 12.3 144 100-249 146-314 (328)
155 PRK13255 thiopurine S-methyltr 98.8 2.5E-08 5.4E-13 85.6 9.0 107 101-214 36-150 (218)
156 KOG3010 Methyltransferase [Gen 98.8 2E-08 4.4E-13 86.0 7.8 131 100-244 31-162 (261)
157 PRK07580 Mg-protoporphyrin IX 98.8 1E-07 2.3E-12 81.6 12.3 101 101-216 62-163 (230)
158 PRK06202 hypothetical protein; 98.7 4.8E-08 1E-12 84.3 9.3 103 101-218 59-165 (232)
159 KOG1271 Methyltransferases [Ge 98.7 3.7E-08 8.1E-13 81.2 8.0 140 102-255 67-211 (227)
160 smart00138 MeTrc Methyltransfe 98.7 2.7E-08 5.8E-13 87.8 7.5 111 102-219 99-242 (264)
161 PRK11727 23S rRNA mA1618 methy 98.7 1.3E-07 2.9E-12 85.5 11.7 80 102-184 114-198 (321)
162 PTZ00338 dimethyladenosine tra 98.7 6.5E-07 1.4E-11 80.3 14.6 76 101-184 35-110 (294)
163 PRK01544 bifunctional N5-gluta 98.7 5.3E-07 1.2E-11 86.6 14.9 129 101-240 346-477 (506)
164 PLN02585 magnesium protoporphy 98.7 3.3E-07 7.1E-12 82.9 12.5 103 102-217 144-248 (315)
165 PRK11933 yebU rRNA (cytosine-C 98.7 1E-06 2.3E-11 83.6 16.3 135 101-244 112-263 (470)
166 PF05185 PRMT5: PRMT5 arginine 98.7 1.3E-07 2.8E-12 89.4 10.0 106 103-218 187-296 (448)
167 PF09445 Methyltransf_15: RNA 98.7 7.9E-08 1.7E-12 78.7 7.3 76 104-184 1-78 (163)
168 PF07021 MetW: Methionine bios 98.6 1.1E-07 2.3E-12 79.5 8.1 73 100-184 11-84 (193)
169 PF05891 Methyltransf_PK: AdoM 98.6 1.4E-07 3E-12 80.2 8.0 103 102-218 55-160 (218)
170 PF00891 Methyltransf_2: O-met 98.6 9.3E-08 2E-12 82.9 7.1 98 101-219 99-199 (241)
171 PF08003 Methyltransf_9: Prote 98.6 6.7E-07 1.4E-11 79.6 12.2 156 73-250 93-268 (315)
172 COG2265 TrmA SAM-dependent met 98.6 7.3E-07 1.6E-11 83.8 12.1 104 102-221 293-398 (432)
173 KOG1661 Protein-L-isoaspartate 98.6 2.8E-07 6.1E-12 77.6 8.0 119 87-220 68-194 (237)
174 TIGR02081 metW methionine bios 98.5 3.6E-07 7.8E-12 76.7 8.2 92 101-211 12-104 (194)
175 KOG3191 Predicted N6-DNA-methy 98.5 5.1E-06 1.1E-10 68.6 14.4 127 101-241 42-184 (209)
176 PRK14896 ksgA 16S ribosomal RN 98.5 4.5E-07 9.7E-12 79.7 8.6 73 102-185 29-101 (258)
177 COG2520 Predicted methyltransf 98.5 2.1E-06 4.5E-11 78.1 12.5 106 101-222 187-292 (341)
178 COG4976 Predicted methyltransf 98.5 3.5E-08 7.5E-13 84.1 0.9 100 103-220 126-226 (287)
179 PRK00274 ksgA 16S ribosomal RN 98.4 6.2E-07 1.4E-11 79.5 7.9 74 101-184 41-114 (272)
180 COG3963 Phospholipid N-methylt 98.4 2.5E-06 5.4E-11 69.5 10.4 105 101-219 47-156 (194)
181 PF01170 UPF0020: Putative RNA 98.4 1.5E-06 3.2E-11 72.4 9.5 112 101-218 27-150 (179)
182 PRK13256 thiopurine S-methyltr 98.4 1.7E-06 3.6E-11 74.6 10.0 110 101-217 42-161 (226)
183 COG0030 KsgA Dimethyladenosine 98.4 1.7E-06 3.6E-11 75.9 9.9 74 103-184 31-104 (259)
184 KOG1709 Guanidinoacetate methy 98.4 5E-06 1.1E-10 70.4 12.3 144 87-256 89-233 (271)
185 TIGR00755 ksgA dimethyladenosi 98.4 2.7E-06 5.9E-11 74.5 10.4 73 101-184 28-103 (253)
186 PF05724 TPMT: Thiopurine S-me 98.4 1.3E-06 2.8E-11 75.0 8.1 107 101-214 36-150 (218)
187 KOG1541 Predicted protein carb 98.4 2E-06 4.4E-11 73.0 8.4 106 103-222 51-163 (270)
188 PF13578 Methyltransf_24: Meth 98.3 6.7E-07 1.4E-11 67.6 3.4 97 107-218 1-104 (106)
189 PRK01747 mnmC bifunctional tRN 98.3 4.5E-06 9.7E-11 82.7 10.2 113 103-219 58-206 (662)
190 PF05958 tRNA_U5-meth_tr: tRNA 98.3 3.1E-06 6.6E-11 77.8 8.1 117 101-242 195-326 (352)
191 PF10294 Methyltransf_16: Puta 98.2 4.6E-06 1E-10 69.0 8.3 108 101-218 44-155 (173)
192 COG0144 Sun tRNA and rRNA cyto 98.2 1.9E-05 4.1E-10 72.7 13.0 138 96-242 149-307 (355)
193 COG1041 Predicted DNA modifica 98.2 1.2E-05 2.5E-10 73.0 11.1 121 88-219 185-310 (347)
194 PF01728 FtsJ: FtsJ-like methy 98.2 1.8E-06 4E-11 71.5 5.3 126 102-250 23-164 (181)
195 KOG1499 Protein arginine N-met 98.2 3.3E-06 7.2E-11 76.2 7.2 118 88-217 48-165 (346)
196 PRK00050 16S rRNA m(4)C1402 me 98.2 7.9E-06 1.7E-10 73.2 9.3 77 102-184 19-99 (296)
197 PRK10742 putative methyltransf 98.2 1.4E-05 3.1E-10 69.5 10.6 81 105-187 91-176 (250)
198 PF05219 DREV: DREV methyltran 98.2 1.5E-05 3.3E-10 69.5 10.5 92 102-217 94-186 (265)
199 PF03291 Pox_MCEL: mRNA cappin 98.2 3.2E-06 6.9E-11 77.0 6.1 114 102-219 62-186 (331)
200 KOG0820 Ribosomal RNA adenine 98.1 8.6E-06 1.9E-10 71.2 8.0 76 101-184 57-132 (315)
201 PF05430 Methyltransf_30: S-ad 98.1 4.2E-06 9.1E-11 65.6 5.5 72 156-241 31-102 (124)
202 KOG2915 tRNA(1-methyladenosine 98.1 4E-05 8.6E-10 67.1 11.8 126 100-246 103-232 (314)
203 TIGR02987 met_A_Alw26 type II 98.1 2.8E-05 6.2E-10 75.0 11.4 79 102-184 31-121 (524)
204 PLN02232 ubiquinone biosynthes 98.1 1.1E-05 2.4E-10 65.8 7.1 80 130-218 1-80 (160)
205 PF02527 GidB: rRNA small subu 98.1 8.9E-05 1.9E-09 62.0 12.4 101 104-221 50-150 (184)
206 KOG1975 mRNA cap methyltransfe 98.1 1.2E-05 2.5E-10 72.0 7.3 115 100-218 115-236 (389)
207 KOG2940 Predicted methyltransf 98.1 5.9E-06 1.3E-10 70.7 5.1 101 101-218 71-173 (325)
208 KOG1500 Protein arginine N-met 98.1 4E-05 8.7E-10 69.0 10.5 103 102-219 177-282 (517)
209 PF02384 N6_Mtase: N-6 DNA Met 98.0 6.7E-06 1.5E-10 73.9 5.3 114 102-218 46-182 (311)
210 PF03059 NAS: Nicotianamine sy 98.0 4.1E-05 8.9E-10 67.8 9.6 108 102-219 120-230 (276)
211 PRK11783 rlmL 23S rRNA m(2)G24 98.0 5.8E-05 1.3E-09 75.4 11.7 81 102-185 190-313 (702)
212 PF01269 Fibrillarin: Fibrilla 98.0 0.00011 2.3E-09 62.9 11.5 132 102-252 73-215 (229)
213 PF02005 TRM: N2,N2-dimethylgu 98.0 2.8E-05 6.1E-10 72.0 8.2 104 103-219 50-154 (377)
214 KOG3420 Predicted RNA methylas 97.9 1.5E-05 3.3E-10 63.6 5.2 92 101-203 47-138 (185)
215 PF00398 RrnaAD: Ribosomal RNA 97.9 2.4E-05 5.1E-10 69.0 6.8 75 102-184 30-106 (262)
216 COG4076 Predicted RNA methylas 97.9 1.3E-05 2.7E-10 66.7 4.1 101 104-218 34-134 (252)
217 COG0293 FtsJ 23S rRNA methylas 97.9 8.4E-05 1.8E-09 62.9 8.9 127 101-249 44-183 (205)
218 TIGR00478 tly hemolysin TlyA f 97.9 9.4E-05 2E-09 64.0 9.0 40 101-141 74-113 (228)
219 COG1867 TRM1 N2,N2-dimethylgua 97.8 0.00012 2.6E-09 66.7 9.5 102 103-219 53-154 (380)
220 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.8 0.00014 3E-09 65.0 9.5 137 102-247 85-243 (283)
221 PRK04148 hypothetical protein; 97.8 6.7E-05 1.5E-09 59.5 6.4 71 101-184 15-86 (134)
222 PF01861 DUF43: Protein of unk 97.7 0.00043 9.4E-09 59.9 11.2 103 102-218 44-148 (243)
223 COG1889 NOP1 Fibrillarin-like 97.6 0.0012 2.6E-08 55.7 11.9 137 101-252 75-217 (231)
224 PF12147 Methyltransf_20: Puta 97.6 0.00077 1.7E-08 59.9 11.2 128 100-240 133-265 (311)
225 PRK11760 putative 23S rRNA C24 97.6 0.00053 1.2E-08 62.4 10.0 71 101-185 210-280 (357)
226 PF01739 CheR: CheR methyltran 97.6 0.00067 1.5E-08 57.3 9.8 111 102-218 31-174 (196)
227 KOG3178 Hydroxyindole-O-methyl 97.5 0.00025 5.5E-09 64.2 6.7 96 103-218 178-274 (342)
228 COG0116 Predicted N6-adenine-s 97.5 0.0019 4.2E-08 59.5 12.4 110 103-218 192-343 (381)
229 PF07942 N2227: N2227-like pro 97.5 0.0004 8.6E-09 61.4 7.5 111 102-222 56-204 (270)
230 KOG2730 Methylase [General fun 97.5 0.00032 6.9E-09 59.8 6.4 78 102-184 94-174 (263)
231 PF06080 DUF938: Protein of un 97.4 0.0013 2.8E-08 55.7 9.3 134 105-244 28-167 (204)
232 PF04816 DUF633: Family of unk 97.4 0.0019 4E-08 55.0 10.3 100 106-218 1-100 (205)
233 KOG1253 tRNA methyltransferase 97.4 0.00033 7.1E-09 66.0 6.0 105 101-219 108-216 (525)
234 PF08123 DOT1: Histone methyla 97.4 0.0018 4E-08 55.0 9.9 108 102-217 42-156 (205)
235 KOG2361 Predicted methyltransf 97.3 0.00027 5.8E-09 61.0 4.6 106 103-219 72-183 (264)
236 KOG1122 tRNA and rRNA cytosine 97.3 0.0034 7.4E-08 58.3 11.4 141 100-250 238-398 (460)
237 TIGR01444 fkbM_fam methyltrans 97.3 0.00092 2E-08 52.7 6.9 55 106-164 2-56 (143)
238 COG0357 GidB Predicted S-adeno 97.3 0.0028 6.1E-08 54.2 9.9 99 103-218 68-167 (215)
239 KOG0822 Protein kinase inhibit 97.2 0.001 2.2E-08 63.2 7.8 105 104-219 369-478 (649)
240 COG2384 Predicted SAM-dependen 97.1 0.0051 1.1E-07 52.5 10.2 105 101-218 15-119 (226)
241 PRK10611 chemotaxis methyltran 97.1 0.0014 3E-08 58.7 6.9 111 102-218 115-261 (287)
242 KOG2187 tRNA uracil-5-methyltr 97.0 0.001 2.2E-08 63.0 5.4 80 101-186 382-466 (534)
243 cd00315 Cyt_C5_DNA_methylase C 97.0 0.011 2.4E-07 52.5 11.6 121 105-241 2-134 (275)
244 PF09243 Rsm22: Mitochondrial 97.0 0.0061 1.3E-07 54.1 9.7 46 102-147 33-79 (274)
245 PF03141 Methyltransf_29: Puta 97.0 0.0024 5.2E-08 60.6 7.2 129 73-222 87-221 (506)
246 PF05971 Methyltransf_10: Prot 96.9 0.002 4.3E-08 57.8 6.2 79 103-184 103-186 (299)
247 TIGR03439 methyl_EasF probable 96.9 0.03 6.6E-07 50.8 13.9 110 101-219 75-197 (319)
248 PF06962 rRNA_methylase: Putat 96.9 0.0045 9.8E-08 49.4 7.3 106 128-240 1-112 (140)
249 PF04445 SAM_MT: Putative SAM- 96.9 0.00099 2.1E-08 57.7 3.6 81 104-186 77-162 (234)
250 TIGR00006 S-adenosyl-methyltra 96.9 0.0098 2.1E-07 53.6 10.1 78 102-184 20-101 (305)
251 COG0500 SmtA SAM-dependent met 96.8 0.021 4.5E-07 43.0 10.4 102 106-220 52-156 (257)
252 KOG1562 Spermidine synthase [A 96.8 0.0014 2.9E-08 58.3 3.9 189 20-220 95-294 (337)
253 KOG4589 Cell division protein 96.7 0.018 3.9E-07 48.2 9.8 125 102-249 69-208 (232)
254 PF04989 CmcI: Cephalosporin h 96.7 0.0078 1.7E-07 51.1 7.7 104 101-218 31-146 (206)
255 COG1352 CheR Methylase of chem 96.5 0.012 2.5E-07 52.2 8.2 111 102-218 96-240 (268)
256 COG1189 Predicted rRNA methyla 96.5 0.011 2.5E-07 51.0 7.7 98 100-217 77-176 (245)
257 KOG2198 tRNA cytosine-5-methyl 96.5 0.029 6.3E-07 51.4 10.6 139 101-244 154-321 (375)
258 PF05148 Methyltransf_8: Hypot 96.4 0.0045 9.8E-08 52.6 4.4 107 100-241 70-176 (219)
259 COG0275 Predicted S-adenosylme 96.3 0.037 8.1E-07 49.5 9.9 77 103-184 24-105 (314)
260 PF13679 Methyltransf_32: Meth 96.3 0.011 2.5E-07 46.9 6.0 64 101-166 24-92 (141)
261 COG0286 HsdM Type I restrictio 96.3 0.051 1.1E-06 52.2 11.4 113 102-218 186-325 (489)
262 PRK11524 putative methyltransf 96.3 0.019 4.2E-07 51.1 8.0 65 155-220 6-81 (284)
263 PF07091 FmrO: Ribosomal RNA m 96.3 0.018 4E-07 50.2 7.5 76 100-182 103-178 (251)
264 KOG3115 Methyltransferase-like 96.2 0.016 3.4E-07 49.1 6.6 114 104-219 62-183 (249)
265 COG3897 Predicted methyltransf 96.1 0.0067 1.5E-07 51.0 3.8 98 102-218 79-177 (218)
266 COG1064 AdhP Zn-dependent alco 96.1 0.053 1.1E-06 49.5 9.8 93 101-221 165-261 (339)
267 KOG1596 Fibrillarin and relate 96.0 0.045 9.8E-07 47.6 8.7 122 101-241 155-286 (317)
268 PF11599 AviRa: RRNA methyltra 96.0 0.034 7.4E-07 47.5 7.7 115 101-217 50-212 (246)
269 PF06460 NSP13: Coronavirus NS 96.0 0.033 7.2E-07 48.8 7.8 144 88-257 45-205 (299)
270 PF04672 Methyltransf_19: S-ad 96.0 0.099 2.2E-06 46.2 10.9 129 102-241 68-210 (267)
271 PTZ00357 methyltransferase; Pr 96.0 0.026 5.6E-07 55.7 7.7 104 105-214 703-830 (1072)
272 PF01795 Methyltransf_5: MraW 96.0 0.02 4.3E-07 51.7 6.6 78 102-184 20-102 (310)
273 KOG3045 Predicted RNA methylas 95.6 0.039 8.4E-07 48.5 6.8 85 101-218 179-263 (325)
274 PRK09424 pntA NAD(P) transhydr 95.4 0.19 4.1E-06 48.6 11.2 108 102-218 164-284 (509)
275 COG1063 Tdh Threonine dehydrog 95.3 0.16 3.5E-06 46.5 10.0 98 103-219 169-269 (350)
276 PF04378 RsmJ: Ribosomal RNA s 95.2 0.16 3.4E-06 44.5 9.1 123 107-246 62-188 (245)
277 PRK09880 L-idonate 5-dehydroge 95.2 0.14 3E-06 46.4 9.3 97 102-219 169-266 (343)
278 PRK13699 putative methylase; P 95.1 0.045 9.7E-07 47.3 5.5 60 159-219 3-72 (227)
279 PHA01634 hypothetical protein 95.1 0.082 1.8E-06 41.6 6.2 76 100-184 26-101 (156)
280 PF01210 NAD_Gly3P_dh_N: NAD-d 95.1 0.058 1.3E-06 43.6 5.8 131 105-255 1-135 (157)
281 cd08283 FDH_like_1 Glutathione 95.0 0.17 3.8E-06 46.7 9.6 110 102-219 184-306 (386)
282 PF00145 DNA_methylase: C-5 cy 95.0 0.18 4E-06 44.8 9.3 122 105-241 2-133 (335)
283 COG0686 Ald Alanine dehydrogen 94.9 0.23 5E-06 44.8 9.4 98 102-216 167-265 (371)
284 COG1568 Predicted methyltransf 94.8 0.053 1.1E-06 48.1 5.1 79 102-185 152-231 (354)
285 KOG1099 SAM-dependent methyltr 94.8 0.13 2.9E-06 44.4 7.3 126 102-250 41-188 (294)
286 COG4121 Uncharacterized conser 94.7 0.036 7.8E-07 48.5 3.9 111 104-218 60-207 (252)
287 TIGR00518 alaDH alanine dehydr 94.6 0.34 7.4E-06 44.9 10.4 98 102-216 166-264 (370)
288 KOG1501 Arginine N-methyltrans 94.6 0.031 6.8E-07 52.4 3.4 78 104-185 68-145 (636)
289 KOG0024 Sorbitol dehydrogenase 94.5 0.19 4.1E-06 45.6 8.0 101 101-217 168-271 (354)
290 KOG0821 Predicted ribosomal RN 94.4 0.036 7.7E-07 47.6 3.0 61 102-168 50-110 (326)
291 TIGR00561 pntA NAD(P) transhyd 94.3 0.45 9.8E-06 45.9 10.6 106 102-216 163-281 (511)
292 TIGR00675 dcm DNA-methyltransf 94.3 0.55 1.2E-05 42.5 10.7 120 106-241 1-131 (315)
293 COG2961 ComJ Protein involved 94.3 0.56 1.2E-05 41.0 10.0 118 107-241 93-213 (279)
294 KOG2352 Predicted spermine/spe 94.1 0.38 8.2E-06 45.8 9.5 106 105-218 51-160 (482)
295 COG5459 Predicted rRNA methyla 94.0 0.09 2E-06 48.1 4.9 110 102-218 113-224 (484)
296 PRK09260 3-hydroxybutyryl-CoA 93.8 0.24 5.3E-06 44.0 7.5 103 104-221 2-119 (288)
297 KOG2078 tRNA modification enzy 93.7 0.22 4.8E-06 46.6 6.9 66 101-171 248-314 (495)
298 PRK12475 thiamine/molybdopteri 93.5 0.28 6.2E-06 44.9 7.4 34 102-136 23-58 (338)
299 PF01555 N6_N4_Mtase: DNA meth 93.4 0.21 4.6E-06 41.8 6.0 44 99-144 188-231 (231)
300 PRK05562 precorrin-2 dehydroge 93.4 0.25 5.4E-06 42.6 6.4 83 87-185 9-95 (223)
301 PRK07502 cyclohexadienyl dehyd 93.2 2.3 5E-05 38.0 12.8 89 104-216 7-97 (307)
302 KOG4058 Uncharacterized conser 93.0 0.13 2.7E-06 41.6 3.7 76 89-168 58-134 (199)
303 cd08230 glucose_DH Glucose deh 93.0 0.65 1.4E-05 42.1 9.1 94 102-219 172-269 (355)
304 TIGR02356 adenyl_thiF thiazole 92.9 0.38 8.3E-06 40.6 6.9 34 102-135 20-54 (202)
305 PRK11524 putative methyltransf 92.9 0.32 7E-06 43.3 6.7 55 91-147 197-251 (284)
306 PRK08644 thiamine biosynthesis 92.8 0.43 9.4E-06 40.7 7.1 34 102-135 27-61 (212)
307 KOG3201 Uncharacterized conser 92.4 0.23 5E-06 40.8 4.5 127 103-242 30-158 (201)
308 cd08281 liver_ADH_like1 Zinc-d 92.4 0.78 1.7E-05 42.0 8.8 98 102-219 191-290 (371)
309 PRK11064 wecC UDP-N-acetyl-D-m 92.4 2.1 4.6E-05 40.2 11.7 103 104-220 4-120 (415)
310 PF14314 Methyltrans_Mon: Viru 92.3 0.41 9E-06 47.5 7.1 146 100-251 320-485 (675)
311 TIGR03451 mycoS_dep_FDH mycoth 92.3 0.92 2E-05 41.3 9.0 99 101-219 175-276 (358)
312 KOG2798 Putative trehalase [Ca 92.2 0.19 4.2E-06 45.3 4.2 107 103-221 151-297 (369)
313 TIGR01202 bchC 2-desacetyl-2-h 92.2 0.79 1.7E-05 40.9 8.3 86 102-218 144-230 (308)
314 KOG1269 SAM-dependent methyltr 92.1 0.24 5.2E-06 45.8 4.9 102 103-217 111-213 (364)
315 TIGR00936 ahcY adenosylhomocys 92.1 4.3 9.3E-05 38.2 13.2 120 101-251 193-313 (406)
316 PLN02353 probable UDP-glucose 92.0 2.9 6.3E-05 40.1 12.3 113 104-222 2-130 (473)
317 PRK05808 3-hydroxybutyryl-CoA 92.0 0.57 1.2E-05 41.4 7.0 101 104-220 4-119 (282)
318 PRK05476 S-adenosyl-L-homocyst 91.9 2.2 4.8E-05 40.3 11.1 119 102-251 211-330 (425)
319 COG0287 TyrA Prephenate dehydr 91.8 1.4 3.1E-05 39.2 9.4 110 103-244 3-114 (279)
320 PRK07688 thiamine/molybdopteri 91.8 0.74 1.6E-05 42.2 7.7 34 102-136 23-58 (339)
321 PF05711 TylF: Macrocin-O-meth 91.6 3.1 6.8E-05 36.4 11.1 108 101-219 73-212 (248)
322 PF03269 DUF268: Caenorhabditi 91.4 0.5 1.1E-05 38.7 5.4 103 103-218 2-110 (177)
323 cd05188 MDR Medium chain reduc 91.2 2.4 5.3E-05 35.9 10.1 98 101-219 133-232 (271)
324 cd00401 AdoHcyase S-adenosyl-L 91.2 2.2 4.7E-05 40.3 10.3 42 102-144 201-243 (413)
325 PRK05597 molybdopterin biosynt 91.2 1 2.2E-05 41.6 8.0 35 102-136 27-62 (355)
326 PF11968 DUF3321: Putative met 91.1 0.49 1.1E-05 40.5 5.4 91 103-219 52-149 (219)
327 cd01492 Aos1_SUMO Ubiquitin ac 91.1 1.1 2.3E-05 37.8 7.5 35 102-136 20-55 (197)
328 PF00107 ADH_zinc_N: Zinc-bind 91.1 0.47 1E-05 36.3 4.9 89 112-221 1-91 (130)
329 PF07279 DUF1442: Protein of u 91.0 2.7 5.8E-05 36.0 9.7 101 102-217 41-146 (218)
330 cd08293 PTGR2 Prostaglandin re 91.0 1.2 2.6E-05 39.9 8.3 95 104-218 156-253 (345)
331 PF02719 Polysacc_synt_2: Poly 91.0 0.82 1.8E-05 41.0 6.9 75 106-184 1-86 (293)
332 cd08285 NADP_ADH NADP(H)-depen 90.8 2 4.3E-05 38.8 9.5 97 101-217 165-264 (351)
333 PF03721 UDPG_MGDP_dh_N: UDP-g 90.8 0.76 1.6E-05 38.3 6.2 111 104-222 1-123 (185)
334 PRK00066 ldh L-lactate dehydro 90.8 2.9 6.4E-05 37.8 10.5 112 100-219 3-122 (315)
335 PRK07066 3-hydroxybutyryl-CoA 90.6 1.4 3.1E-05 40.1 8.2 103 103-220 7-120 (321)
336 PRK15116 sulfur acceptor prote 90.6 2.1 4.5E-05 38.0 9.1 37 101-137 28-65 (268)
337 PRK12439 NAD(P)H-dependent gly 90.6 3.3 7.1E-05 37.8 10.7 132 101-255 5-143 (341)
338 TIGR01470 cysG_Nterm siroheme 90.5 1.2 2.5E-05 37.9 7.2 74 96-185 2-79 (205)
339 TIGR01627 A_thal_3515 uncharac 90.4 3.2 6.9E-05 35.5 9.5 51 95-147 32-82 (225)
340 PRK13699 putative methylase; P 90.4 0.98 2.1E-05 38.9 6.7 46 100-147 161-206 (227)
341 PRK10637 cysG siroheme synthas 90.4 0.83 1.8E-05 43.5 6.8 76 94-185 3-82 (457)
342 PRK07530 3-hydroxybutyryl-CoA 90.3 1.6 3.5E-05 38.7 8.3 102 104-221 5-121 (292)
343 PF10237 N6-adenineMlase: Prob 90.2 4.4 9.6E-05 33.1 10.1 99 101-218 24-122 (162)
344 PF02254 TrkA_N: TrkA-N domain 90.2 1.6 3.5E-05 32.7 7.2 91 106-219 1-96 (116)
345 PRK15076 alpha-galactosidase; 90.2 3.3 7E-05 39.3 10.6 76 104-184 2-84 (431)
346 cd08239 THR_DH_like L-threonin 90.2 3.5 7.6E-05 36.9 10.5 98 101-219 162-262 (339)
347 PLN02494 adenosylhomocysteinas 90.2 4.5 9.9E-05 38.8 11.5 119 102-251 253-373 (477)
348 TIGR03366 HpnZ_proposed putati 90.0 3.3 7.1E-05 36.3 10.0 96 102-219 120-218 (280)
349 PF02737 3HCDH_N: 3-hydroxyacy 90.0 2.2 4.8E-05 35.3 8.3 100 105-220 1-115 (180)
350 PRK10458 DNA cytosine methylas 89.9 4.2 9.1E-05 39.0 11.2 129 103-241 88-250 (467)
351 PRK06035 3-hydroxyacyl-CoA deh 89.8 2 4.4E-05 38.1 8.5 100 104-219 4-121 (291)
352 PF10354 DUF2431: Domain of un 89.8 0.53 1.2E-05 38.6 4.4 107 107-218 1-124 (166)
353 KOG1227 Putative methyltransfe 89.7 0.094 2E-06 47.0 -0.1 79 101-184 193-271 (351)
354 cd05297 GH4_alpha_glucosidase_ 89.7 1.3 2.9E-05 41.8 7.5 76 105-185 2-84 (423)
355 cd08254 hydroxyacyl_CoA_DH 6-h 89.5 2.7 5.8E-05 37.3 9.1 97 101-218 164-262 (338)
356 cd01487 E1_ThiF_like E1_ThiF_l 89.5 1.7 3.7E-05 35.8 7.2 31 105-136 1-33 (174)
357 COG4017 Uncharacterized protei 89.4 1.2 2.6E-05 37.6 6.2 37 100-138 42-79 (254)
358 COG0270 Dcm Site-specific DNA 89.3 1.6 3.4E-05 39.7 7.5 124 103-241 3-138 (328)
359 PTZ00117 malate dehydrogenase; 89.3 11 0.00025 34.0 13.1 109 102-219 4-122 (319)
360 PRK07819 3-hydroxybutyryl-CoA 89.3 1.6 3.4E-05 39.0 7.4 101 104-220 6-122 (286)
361 cd00755 YgdL_like Family of ac 89.3 1.8 4E-05 37.4 7.5 35 102-136 10-45 (231)
362 PRK08268 3-hydroxy-acyl-CoA de 89.2 2.1 4.7E-05 41.4 8.8 104 102-221 6-124 (507)
363 cd05291 HicDH_like L-2-hydroxy 89.1 11 0.00024 33.8 12.8 109 104-219 1-117 (306)
364 PF00670 AdoHcyase_NAD: S-aden 89.1 3.7 8.1E-05 33.6 8.8 119 101-251 21-141 (162)
365 PRK08293 3-hydroxybutyryl-CoA 89.0 4.1 8.8E-05 36.1 9.9 102 104-220 4-121 (287)
366 cd00757 ThiF_MoeB_HesA_family 88.9 1.4 3.1E-05 37.7 6.7 35 102-136 20-55 (228)
367 COG0240 GpsA Glycerol-3-phosph 88.9 7.8 0.00017 35.4 11.5 133 104-255 2-137 (329)
368 TIGR02354 thiF_fam2 thiamine b 88.8 2.5 5.5E-05 35.6 7.9 33 102-135 20-54 (200)
369 cd01485 E1-1_like Ubiquitin ac 88.8 2.1 4.5E-05 36.0 7.4 35 102-136 18-53 (198)
370 TIGR03376 glycerol3P_DH glycer 88.7 4.4 9.6E-05 37.2 10.0 132 105-255 1-149 (342)
371 PRK08762 molybdopterin biosynt 88.7 1.4 3E-05 40.9 6.8 35 101-135 133-168 (376)
372 PLN02545 3-hydroxybutyryl-CoA 88.7 2.2 4.8E-05 37.9 7.9 102 103-220 4-120 (295)
373 cd01483 E1_enzyme_family Super 88.5 2.1 4.5E-05 33.7 6.8 31 105-136 1-33 (143)
374 PF01262 AlaDh_PNT_C: Alanine 88.4 0.71 1.5E-05 37.7 4.2 104 102-216 19-136 (168)
375 PF03141 Methyltransf_29: Puta 88.3 1.6 3.5E-05 41.8 7.0 129 101-252 364-493 (506)
376 PRK06130 3-hydroxybutyryl-CoA 88.3 3.5 7.5E-05 36.9 9.0 101 104-219 5-115 (311)
377 COG1086 Predicted nucleoside-d 88.3 2.8 6.1E-05 40.9 8.7 80 102-185 249-335 (588)
378 cd08232 idonate-5-DH L-idonate 88.2 5.8 0.00013 35.4 10.4 96 102-218 165-261 (339)
379 PRK05708 2-dehydropantoate 2-r 88.1 3.3 7.2E-05 37.1 8.7 96 104-217 3-102 (305)
380 PRK06719 precorrin-2 dehydroge 88.1 1 2.2E-05 36.6 4.8 76 92-184 2-79 (157)
381 PRK14620 NAD(P)H-dependent gly 87.9 7 0.00015 35.2 10.8 128 105-254 2-137 (326)
382 cd08238 sorbose_phosphate_red 87.9 6.2 0.00014 36.7 10.7 102 103-218 176-287 (410)
383 cd08237 ribitol-5-phosphate_DH 87.8 4.8 0.00011 36.4 9.7 92 101-218 162-255 (341)
384 PF12692 Methyltransf_17: S-ad 87.8 1.4 3E-05 35.6 5.3 105 99-217 25-132 (160)
385 PF01488 Shikimate_DH: Shikima 87.7 6.5 0.00014 30.8 9.2 85 101-203 10-97 (135)
386 TIGR03201 dearomat_had 6-hydro 87.6 2.9 6.4E-05 37.8 8.2 44 101-145 165-209 (349)
387 cd05278 FDH_like Formaldehyde 87.4 5 0.00011 35.8 9.5 96 102-217 167-265 (347)
388 PRK08618 ornithine cyclodeamin 87.4 17 0.00037 32.9 13.0 115 58-185 85-202 (325)
389 KOG1098 Putative SAM-dependent 87.3 2.1 4.5E-05 42.2 7.1 105 100-222 42-161 (780)
390 PTZ00082 L-lactate dehydrogena 87.2 12 0.00026 34.0 11.8 77 102-185 5-84 (321)
391 COG5379 BtaA S-adenosylmethion 86.6 1.5 3.2E-05 39.4 5.3 73 101-182 62-139 (414)
392 PF02636 Methyltransf_28: Puta 86.5 0.65 1.4E-05 40.5 3.1 45 103-147 19-71 (252)
393 PRK10309 galactitol-1-phosphat 86.5 5.5 0.00012 35.9 9.3 100 101-219 159-260 (347)
394 COG1748 LYS9 Saccharopine dehy 86.5 2.4 5.3E-05 39.6 7.0 73 104-185 2-78 (389)
395 PRK15057 UDP-glucose 6-dehydro 86.4 21 0.00045 33.4 13.2 106 105-220 2-118 (388)
396 cd08294 leukotriene_B4_DH_like 86.3 6.1 0.00013 34.9 9.4 96 101-218 142-240 (329)
397 cd05285 sorbitol_DH Sorbitol d 86.2 6.3 0.00014 35.3 9.5 98 101-218 161-264 (343)
398 PRK09496 trkA potassium transp 86.2 4.9 0.00011 37.7 9.1 72 102-184 230-306 (453)
399 PLN02740 Alcohol dehydrogenase 86.1 5.2 0.00011 36.8 9.1 98 101-218 197-299 (381)
400 TIGR02822 adh_fam_2 zinc-bindi 86.1 7.1 0.00015 35.1 9.8 89 101-219 164-254 (329)
401 PRK08306 dipicolinate synthase 86.1 6.6 0.00014 35.2 9.5 86 102-216 151-238 (296)
402 PRK05600 thiamine biosynthesis 85.9 4.1 8.8E-05 37.8 8.2 35 101-135 39-74 (370)
403 cd01488 Uba3_RUB Ubiquitin act 85.8 3 6.5E-05 37.4 7.0 33 105-137 1-34 (291)
404 COG1565 Uncharacterized conser 85.7 1.6 3.4E-05 40.3 5.2 48 100-147 75-130 (370)
405 PLN03154 putative allyl alcoho 85.7 6.6 0.00014 35.7 9.4 97 101-218 157-257 (348)
406 PRK12749 quinate/shikimate deh 85.6 9 0.0002 34.2 10.0 82 101-184 122-205 (288)
407 KOG2671 Putative RNA methylase 85.6 0.59 1.3E-05 42.8 2.4 115 100-219 206-354 (421)
408 COG0604 Qor NADPH:quinone redu 85.6 4.7 0.0001 36.6 8.3 96 102-219 142-241 (326)
409 PLN02827 Alcohol dehydrogenase 85.5 7 0.00015 36.0 9.6 99 101-219 192-295 (378)
410 PF13241 NAD_binding_7: Putati 85.4 4.4 9.6E-05 30.1 6.8 91 100-222 4-94 (103)
411 COG0169 AroE Shikimate 5-dehyd 85.2 7.5 0.00016 34.8 9.2 72 75-147 98-171 (283)
412 cd05292 LDH_2 A subgroup of L- 85.2 26 0.00056 31.5 12.9 106 105-219 2-116 (308)
413 TIGR02825 B4_12hDH leukotriene 84.7 9.2 0.0002 34.0 9.8 96 101-218 137-236 (325)
414 cd05290 LDH_3 A subgroup of L- 84.4 31 0.00067 31.1 13.1 110 105-220 1-120 (307)
415 PRK07340 ornithine cyclodeamin 84.3 20 0.00044 32.2 11.7 112 59-185 84-198 (304)
416 PRK08328 hypothetical protein; 84.2 1.4 3.1E-05 38.0 4.1 35 102-136 26-61 (231)
417 cd05197 GH4_glycoside_hydrolas 84.0 12 0.00027 35.3 10.6 69 105-183 2-82 (425)
418 PRK03562 glutathione-regulated 83.9 4.9 0.00011 39.9 8.2 70 103-185 400-474 (621)
419 TIGR00497 hsdM type I restrict 83.8 9.2 0.0002 36.9 9.9 110 104-216 219-352 (501)
420 COG0499 SAM1 S-adenosylhomocys 83.8 31 0.00068 32.1 12.5 120 102-252 208-328 (420)
421 PRK06223 malate dehydrogenase; 83.7 17 0.00037 32.3 11.1 108 104-220 3-120 (307)
422 cd05213 NAD_bind_Glutamyl_tRNA 83.7 15 0.00032 33.1 10.6 96 102-222 177-275 (311)
423 PRK07904 short chain dehydroge 83.7 9 0.0002 32.9 9.0 79 101-184 6-96 (253)
424 KOG1331 Predicted methyltransf 83.7 1.1 2.3E-05 40.0 3.1 99 101-218 44-142 (293)
425 PLN02256 arogenate dehydrogena 83.6 33 0.00071 30.9 12.8 91 101-220 34-127 (304)
426 TIGR01763 MalateDH_bact malate 83.6 20 0.00044 32.2 11.5 107 104-220 2-119 (305)
427 cd05298 GH4_GlvA_pagL_like Gly 83.6 10 0.00022 36.1 9.8 39 105-144 2-47 (437)
428 PF02826 2-Hacid_dh_C: D-isome 83.4 17 0.00036 29.8 10.1 109 101-240 34-143 (178)
429 PRK06249 2-dehydropantoate 2-r 83.4 14 0.00031 33.1 10.4 98 102-217 4-104 (313)
430 cd01065 NAD_bind_Shikimate_DH 83.3 9.1 0.0002 30.0 8.2 74 101-186 17-92 (155)
431 PF02558 ApbA: Ketopantoate re 83.3 6.7 0.00015 30.8 7.4 95 106-218 1-100 (151)
432 PRK14027 quinate/shikimate deh 83.2 19 0.00041 32.1 11.0 64 75-141 101-166 (283)
433 TIGR02279 PaaC-3OHAcCoADH 3-hy 83.2 6.3 0.00014 38.1 8.4 104 102-221 4-122 (503)
434 PRK08945 putative oxoacyl-(acy 83.0 7.8 0.00017 32.8 8.3 77 102-184 11-101 (247)
435 PRK06141 ornithine cyclodeamin 82.9 36 0.00077 30.7 13.4 113 58-184 83-198 (314)
436 PRK11154 fadJ multifunctional 82.8 5.5 0.00012 40.2 8.1 102 104-220 310-426 (708)
437 PRK07417 arogenate dehydrogena 82.7 8 0.00017 34.1 8.4 87 105-219 2-90 (279)
438 PRK12549 shikimate 5-dehydroge 82.6 22 0.00047 31.6 11.2 98 75-184 101-201 (284)
439 PRK03659 glutathione-regulated 82.4 8.7 0.00019 38.0 9.3 93 104-219 401-498 (601)
440 PRK06046 alanine dehydrogenase 82.4 32 0.00069 31.2 12.4 113 59-185 88-203 (326)
441 cd08295 double_bond_reductase_ 82.3 13 0.00028 33.3 9.8 97 101-218 150-250 (338)
442 TIGR01809 Shik-DH-AROM shikima 82.2 18 0.0004 32.0 10.5 37 102-139 124-162 (282)
443 PRK07102 short chain dehydroge 82.2 6.8 0.00015 33.1 7.5 75 104-184 2-85 (243)
444 KOG3987 Uncharacterized conser 82.1 0.33 7.2E-06 41.4 -0.6 93 101-217 111-205 (288)
445 PRK00094 gpsA NAD(P)H-dependen 81.6 21 0.00045 31.8 10.8 96 105-217 3-103 (325)
446 PF11899 DUF3419: Protein of u 81.6 4.3 9.3E-05 37.9 6.4 43 101-145 34-76 (380)
447 PRK06718 precorrin-2 dehydroge 81.5 3.9 8.5E-05 34.5 5.7 37 96-134 3-41 (202)
448 TIGR01381 E1_like_apg7 E1-like 81.5 1.9 4E-05 42.9 4.1 34 102-136 337-372 (664)
449 TIGR01408 Ube1 ubiquitin-activ 81.4 5.4 0.00012 41.9 7.7 52 84-136 3-58 (1008)
450 TIGR02355 moeB molybdopterin s 81.2 2.3 5E-05 37.0 4.3 37 102-138 23-60 (240)
451 PRK12921 2-dehydropantoate 2-r 81.1 8.9 0.00019 33.9 8.1 93 105-217 2-100 (305)
452 PRK12548 shikimate 5-dehydroge 81.0 23 0.00049 31.5 10.7 34 101-136 124-160 (289)
453 COG0569 TrkA K+ transport syst 80.9 10 0.00022 32.5 8.1 70 104-184 1-75 (225)
454 PF11899 DUF3419: Protein of u 80.8 2.7 5.9E-05 39.2 4.8 58 156-219 275-334 (380)
455 PRK06194 hypothetical protein; 80.7 11 0.00025 32.6 8.6 77 102-185 5-93 (287)
456 COG0677 WecC UDP-N-acetyl-D-ma 80.6 23 0.0005 33.3 10.6 106 104-222 10-131 (436)
457 PRK08507 prephenate dehydrogen 80.2 13 0.00029 32.6 8.9 88 105-220 2-91 (275)
458 cd08278 benzyl_alcohol_DH Benz 80.0 15 0.00032 33.4 9.4 97 102-218 186-284 (365)
459 cd01493 APPBP1_RUB Ubiquitin a 80.0 6.4 0.00014 37.3 7.1 33 102-136 19-54 (425)
460 COG4565 CitB Response regulato 80.0 23 0.00051 30.4 9.7 75 128-218 2-81 (224)
461 PF00899 ThiF: ThiF family; I 79.9 2 4.4E-05 33.5 3.2 36 103-138 2-38 (135)
462 cd05296 GH4_P_beta_glucosidase 79.8 26 0.00056 33.1 11.1 70 105-184 2-84 (419)
463 PRK08223 hypothetical protein; 79.7 2.5 5.5E-05 37.8 4.1 37 102-138 26-63 (287)
464 COG1062 AdhC Zn-dependent alco 79.6 5 0.00011 36.8 6.0 98 102-218 185-284 (366)
465 PRK00258 aroE shikimate 5-dehy 79.6 11 0.00025 33.2 8.3 74 101-186 121-196 (278)
466 cd08234 threonine_DH_like L-th 79.5 13 0.00027 33.0 8.7 93 102-217 159-255 (334)
467 PF00106 adh_short: short chai 79.3 11 0.00023 29.7 7.4 76 104-185 1-90 (167)
468 PRK06949 short chain dehydroge 79.3 17 0.00038 30.7 9.2 76 102-184 8-95 (258)
469 PF06690 DUF1188: Protein of u 79.2 6 0.00013 34.4 6.0 39 103-143 42-81 (252)
470 PLN02819 lysine-ketoglutarate 79.0 9.6 0.00021 40.2 8.5 77 102-185 568-658 (1042)
471 PRK05690 molybdopterin biosynt 78.9 3.1 6.7E-05 36.3 4.3 36 102-137 31-67 (245)
472 PRK08410 2-hydroxyacid dehydro 78.9 21 0.00045 32.2 9.8 88 102-220 144-232 (311)
473 COG1893 ApbA Ketopantoate redu 78.9 40 0.00087 30.3 11.7 95 104-217 1-99 (307)
474 PRK10669 putative cation:proto 78.9 10 0.00023 36.9 8.5 93 104-219 418-515 (558)
475 cd08261 Zn_ADH7 Alcohol dehydr 78.8 16 0.00035 32.5 9.2 96 101-217 158-256 (337)
476 TIGR02437 FadB fatty oxidation 78.7 4.4 9.4E-05 41.0 5.9 101 104-220 314-429 (714)
477 KOG1201 Hydroxysteroid 17-beta 78.7 12 0.00025 33.7 7.9 74 103-184 38-123 (300)
478 PRK06153 hypothetical protein; 78.5 2.6 5.7E-05 39.3 3.9 34 102-135 175-209 (393)
479 TIGR03026 NDP-sugDHase nucleot 78.3 47 0.001 31.0 12.4 107 105-219 2-120 (411)
480 KOG2651 rRNA adenine N-6-methy 78.2 4 8.7E-05 38.0 4.9 42 102-144 153-194 (476)
481 PRK06522 2-dehydropantoate 2-r 78.2 20 0.00044 31.5 9.5 92 105-217 2-98 (304)
482 PRK08213 gluconate 5-dehydroge 78.1 13 0.00029 31.7 8.1 75 102-184 11-98 (259)
483 COG1179 Dinucleotide-utilizing 78.0 3.1 6.7E-05 36.4 3.9 41 102-142 29-70 (263)
484 KOG1198 Zinc-binding oxidoredu 78.0 6.2 0.00013 36.3 6.2 77 101-185 156-235 (347)
485 PLN02928 oxidoreductase family 77.8 23 0.0005 32.5 9.9 103 102-220 158-262 (347)
486 COG4798 Predicted methyltransf 77.6 6.9 0.00015 33.3 5.8 114 101-218 47-165 (238)
487 cd08233 butanediol_DH_like (2R 77.6 31 0.00067 30.9 10.7 98 101-218 171-271 (351)
488 PRK06172 short chain dehydroge 77.5 19 0.00042 30.5 8.9 76 102-184 6-93 (253)
489 PTZ00345 glycerol-3-phosphate 77.4 37 0.00081 31.4 11.2 136 101-255 9-162 (365)
490 PF02153 PDH: Prephenate dehyd 77.2 18 0.00039 31.6 8.7 75 117-216 2-76 (258)
491 PF01408 GFO_IDH_MocA: Oxidore 76.9 28 0.0006 25.9 11.6 111 105-244 2-115 (120)
492 PF05050 Methyltransf_21: Meth 76.7 6.7 0.00015 30.8 5.5 42 108-149 1-48 (167)
493 PRK07454 short chain dehydroge 76.6 25 0.00054 29.5 9.3 76 102-184 5-92 (241)
494 PRK08217 fabG 3-ketoacyl-(acyl 76.6 23 0.0005 29.7 9.1 76 102-184 4-91 (253)
495 PLN02702 L-idonate 5-dehydroge 76.6 16 0.00034 33.1 8.5 97 102-218 181-284 (364)
496 PRK08655 prephenate dehydrogen 76.5 50 0.0011 31.3 12.1 84 105-216 2-89 (437)
497 PRK13243 glyoxylate reductase; 76.4 21 0.00046 32.5 9.3 90 102-220 149-240 (333)
498 COG0373 HemA Glutamyl-tRNA red 76.4 30 0.00066 32.6 10.3 97 102-222 177-276 (414)
499 cd08236 sugar_DH NAD(P)-depend 76.4 32 0.00069 30.6 10.4 98 101-218 158-257 (343)
500 PRK09422 ethanol-active dehydr 76.3 37 0.0008 30.1 10.7 97 101-218 161-260 (338)
No 1
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=100.00 E-value=2.6e-47 Score=332.34 Aligned_cols=222 Identities=45% Similarity=0.790 Sum_probs=203.4
Q ss_pred CeEEeeec---cccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCCeE
Q 025107 30 CWYEEEIE---ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTI 106 (257)
Q Consensus 30 ~w~~~~~~---~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~V 106 (257)
.||+|..+ ++.+..|++++++++.+|+||+|.|++++.+|++|++||.+|+++++++.|||+|+|+|++.+++|++|
T Consensus 1 ~w~~e~~~~~~~~~~~~~~v~~vl~~~~s~yQ~i~i~~~~~~G~~l~ldg~~q~~e~de~~y~e~l~h~~~~~~~~p~~V 80 (246)
T PF01564_consen 1 MWFTEYYSQFDPGLGVSYRVEEVLYEEKSPYQHIEIFESSPFGRILVLDGDVQLSERDEFIYHEMLVHPPLLLHPNPKRV 80 (246)
T ss_dssp TEEEEEET-TSTTEEEEEEEEEEEEEEEESSSEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSST-EE
T ss_pred CeEEEEeccCCCCceEEEEEEEEEEccCCCCCcEEEEEecCcCcEEEECCeEEEEEechHHHHHHHhhhHhhcCCCcCce
Confidence 59999998 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCC-ceeEEEEcCCC
Q 025107 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE-SYDVIIGDLAD 185 (257)
Q Consensus 107 L~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~-~fDvIi~D~~~ 185 (257)
|+||+|+|+++++++++++..+||+|||||.|+++|+++|+.....+.+||++++++||+.|+++..+ +||+|++|+++
T Consensus 81 LiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~d 160 (246)
T PF01564_consen 81 LIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTD 160 (246)
T ss_dssp EEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEEESSS
T ss_pred EEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEEeCCC
Confidence 99999999999999999878899999999999999999998654447899999999999999999887 99999999999
Q ss_pred CCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeecCcccc
Q 025107 186 PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSYSFF 256 (257)
Q Consensus 186 ~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~~~~~ 256 (257)
|. .+...|+++|||+. ++++|+|||++++|.+++ +.....++.+.++++++|+++.+|....|+|.
T Consensus 161 p~--~~~~~l~t~ef~~~-~~~~L~~~Gv~v~~~~~~--~~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~~ 226 (246)
T PF01564_consen 161 PD--GPAPNLFTREFYQL-CKRRLKPDGVLVLQAGSP--FLHPELFKSILKTLRSVFPQVKPYTAYVPSYG 226 (246)
T ss_dssp TT--SCGGGGSSHHHHHH-HHHHEEEEEEEEEEEEET--TTTHHHHHHHHHHHHTTSSEEEEEEEECTTSC
T ss_pred CC--CCcccccCHHHHHH-HHhhcCCCcEEEEEccCc--ccchHHHHHHHHHHHHhCCceEEEEEEcCeec
Confidence 76 44456999999999 799999999999999777 56788999999999999999999999877764
No 2
>PLN02823 spermine synthase
Probab=100.00 E-value=9.5e-47 Score=341.07 Aligned_cols=252 Identities=73% Similarity=1.190 Sum_probs=217.9
Q ss_pred ceeeecCCcccccCCccCcCC-CCccccCeEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCccccc
Q 025107 3 EISCSNGISQANGADAKNVAL-TGYRKSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSA 81 (257)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~ 81 (257)
||--.||.|..........+. ..+..+.|+.|...++.+..+.++++|++.+|+||+|+|++++.+|++|++||..|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~e~~~~~~~~~~~~~~vl~~~~S~yQ~I~V~~~~~~g~~L~lDg~~qs~ 82 (336)
T PLN02823 3 EIVHGNGTSHITAVATPTAALASNYAKSLWYEEEIEDDLRWSYAVNSVLHTGTSEFQDIALVDTKPFGKVLIIDGKMQSA 82 (336)
T ss_pred ceeccCCcccccCCCCcccccccccccCeeEeeccCCCcceEEEeccEEEeccCCCeEEEEEECCCCceEEEECCccccc
Confidence 566677776543221111111 1223668999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE
Q 025107 82 EVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV 161 (257)
Q Consensus 82 ~~~~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~ 161 (257)
+.+++.|||+|+|+|++.+++|++||+||+|+|+++++++++++..+|++||||++++++||++|+.+...+.+||++++
T Consensus 83 ~~de~~YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~ 162 (336)
T PLN02823 83 EADEFVYHESLVHPALLHHPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELI 162 (336)
T ss_pred cchHHHHHHHHHhHHHhhCCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEE
Confidence 99999999999999999999999999999999999999999877789999999999999999999876556789999999
Q ss_pred EcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHH-HHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhh
Q 025107 162 INDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYE-FVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (257)
Q Consensus 162 ~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~-~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (257)
++||++|++...++||+|++|+++|...+|+.+|++.|||+ . ++++|+|||++++|.+++..+...+.++.++++|++
T Consensus 163 ~~Da~~~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~-~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~ 241 (336)
T PLN02823 163 INDARAELEKRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERI-VKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQ 241 (336)
T ss_pred EChhHHHHhhCCCCccEEEecCCCccccCcchhhccHHHHHHH-HHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHH
Confidence 99999999887889999999999876545667899999998 8 799999999999998876545567789999999999
Q ss_pred hCCceEEEeecCccc
Q 025107 241 VFKCGCCALFSSYSF 255 (257)
Q Consensus 241 ~F~~v~~~~~~~~~~ 255 (257)
+||+|.+|....|+|
T Consensus 242 vF~~v~~y~~~vPsf 256 (336)
T PLN02823 242 VFKYVVPYTAHVPSF 256 (336)
T ss_pred hCCCEEEEEeecCCC
Confidence 999999998644433
No 3
>PRK00536 speE spermidine synthase; Provisional
Probab=100.00 E-value=3.2e-45 Score=319.89 Aligned_cols=202 Identities=17% Similarity=0.206 Sum_probs=182.8
Q ss_pred CeEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEE
Q 025107 30 CWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIM 109 (257)
Q Consensus 30 ~w~~~~~~~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~I 109 (257)
.|++|..+++.+.+++++++|++++|+||+|.|+++..+||+|.|| ..|+++.||+.|||||+|+|++.||+|++||+|
T Consensus 1 ~w~~e~~~~~~~~~~~v~~~L~~~kS~~Q~i~i~es~~fGr~LvLD-~~~~te~dEfiYHEmLvHppl~~h~~pk~VLIi 79 (262)
T PRK00536 1 MWITQEITPYLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLN-KQLLFKNFLHIESELLAHMGGCTKKELKEVLIV 79 (262)
T ss_pred CceEEecCCCceEEEEEEEEEEccCCCCcEEEEEEccccccEEEEe-eeeeecchhhhHHHHHHHHHHhhCCCCCeEEEE
Confidence 4999999999999999999999999999999999999999999999 555689999999999999999999999999999
Q ss_pred eccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCC
Q 025107 110 GGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEG 189 (257)
Q Consensus 110 G~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~ 189 (257)
|+|+|+++|+++||+ .+|+.||||++|++++|+|++....+++|||++++. .+.+...++||+||+|..
T Consensus 80 GGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~----~~~~~~~~~fDVIIvDs~----- 148 (262)
T PRK00536 80 DGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK----QLLDLDIKKYDLIICLQE----- 148 (262)
T ss_pred cCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee----hhhhccCCcCCEEEEcCC-----
Confidence 999999999999996 399999999999999999998555579999999997 233333478999999953
Q ss_pred CcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeecC
Q 025107 190 GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSS 252 (257)
Q Consensus 190 ~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~ 252 (257)
++++||+. ++++|+|||++++|.++| +...+.++.+.++++++|+.+.+|...-
T Consensus 149 ------~~~~fy~~-~~~~L~~~Gi~v~Qs~sp--~~~~~~~~~i~~~l~~~F~~v~~y~~~v 202 (262)
T PRK00536 149 ------PDIHKIDG-LKRMLKEDGVFISVAKHP--LLEHVSMQNALKNMGDFFSIAMPFVAPL 202 (262)
T ss_pred ------CChHHHHH-HHHhcCCCcEEEECCCCc--ccCHHHHHHHHHHHHhhCCceEEEEecC
Confidence 35799999 799999999999999998 6678899999999999999999997643
No 4
>PLN02366 spermidine synthase
Probab=100.00 E-value=1e-44 Score=324.78 Aligned_cols=220 Identities=33% Similarity=0.618 Sum_probs=199.6
Q ss_pred CccccCeEEee--eccccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHHhhcCCC
Q 025107 25 GYRKSCWYEEE--IEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPN 102 (257)
Q Consensus 25 ~~~~~~w~~~~--~~~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~ 102 (257)
....+.|+.|. .+++.+.+++++++|++.+|+||+|.|++++.+|++|++||.+|+++++++.||++++|+|++.+++
T Consensus 12 ~~~~~~w~~e~~~~~~~~~~~~~v~~~l~~~~s~yQ~i~v~~~~~~g~~L~lDg~~q~~~~de~~Y~e~l~h~~l~~~~~ 91 (308)
T PLN02366 12 STVIPGWFSEISPMWPGEAHSLKVEKVLFQGKSDFQDVLVFESATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPN 91 (308)
T ss_pred chhhhceEeecccCCCCceEEEEEeeEEEeccCCCeeEEEEEcCCCceEEEECCEeeecCccHHHHHHHHHHHHHhhCCC
Confidence 35568999987 3577889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-CCceeEEEE
Q 025107 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIG 181 (257)
Q Consensus 103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-~~~fDvIi~ 181 (257)
+++||+||||+|++++++++++++.+|++||||+++++.||++|+.....+++||++++++||++|++.. +++||+|++
T Consensus 92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~ 171 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIV 171 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEE
Confidence 9999999999999999999998788999999999999999999974333468999999999999999875 578999999
Q ss_pred cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhC-CceEEEe
Q 025107 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF-KCGCCAL 249 (257)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F-~~v~~~~ 249 (257)
|+++|. +|...|++.+||+. ++++|+|||++++|.+++ |...+.++.+.++|+++| +.+.+|.
T Consensus 172 D~~dp~--~~~~~L~t~ef~~~-~~~~L~pgGvlv~q~~s~--~~~~~~~~~i~~tl~~~F~~~v~~~~ 235 (308)
T PLN02366 172 DSSDPV--GPAQELFEKPFFES-VARALRPGGVVCTQAESM--WLHMDLIEDLIAICRETFKGSVNYAW 235 (308)
T ss_pred cCCCCC--CchhhhhHHHHHHH-HHHhcCCCcEEEECcCCc--ccchHHHHHHHHHHHHHCCCceeEEE
Confidence 999886 55678999999999 799999999999999877 777889999999999999 4666654
No 5
>PRK00811 spermidine synthase; Provisional
Probab=100.00 E-value=9.3e-45 Score=322.57 Aligned_cols=218 Identities=40% Similarity=0.735 Sum_probs=201.1
Q ss_pred cCeEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCCeEEE
Q 025107 29 SCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFI 108 (257)
Q Consensus 29 ~~w~~~~~~~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~ 108 (257)
+.|+.|..+++.+..+..+++|++++|+||+|.|++++++|++|++||..|+++.+++.|||+++|+|++.++++++||+
T Consensus 3 ~~w~~e~~~~~~~~~~~~~~~l~~~~s~yq~i~v~~~~~~g~~l~lDg~~q~~~~de~~Y~e~l~h~~~~~~~~p~~VL~ 82 (283)
T PRK00811 3 ELWFTETLTDNYGQSFRVKKVLYEEKSPFQRIEIFETPEFGRLLALDGCVMTTERDEFIYHEMMTHVPLFAHPNPKRVLI 82 (283)
T ss_pred CcceeeccCCccceEEeeccEEEEcCCCCeeEEEEEcCCccEEEEECCeeeecCcchhhHHHHhhhHHHhhCCCCCEEEE
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh-ccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCC
Q 025107 109 MGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPI 187 (257)
Q Consensus 109 IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~-~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~ 187 (257)
||||+|+++++++++++..+|++||+|++++++|+++|+. ..+.+.+||++++++|+++|++...++||+|++|+++|.
T Consensus 83 iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~ 162 (283)
T PRK00811 83 IGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTDPV 162 (283)
T ss_pred EecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEECCCCCC
Confidence 9999999999999987778999999999999999999973 333346899999999999999887789999999999886
Q ss_pred CCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeec
Q 025107 188 EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFS 251 (257)
Q Consensus 188 ~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~ 251 (257)
.|..+|++.+||+. ++++|+|||++++|.++| +.....++++.++|+++|++|.+|...
T Consensus 163 --~~~~~l~t~ef~~~-~~~~L~~gGvlv~~~~~~--~~~~~~~~~i~~tl~~~F~~v~~~~~~ 221 (283)
T PRK00811 163 --GPAEGLFTKEFYEN-CKRALKEDGIFVAQSGSP--FYQADEIKDMHRKLKEVFPIVRPYQAA 221 (283)
T ss_pred --CchhhhhHHHHHHH-HHHhcCCCcEEEEeCCCc--ccCHHHHHHHHHHHHHHCCCEEEEEeE
Confidence 55568999999999 799999999999998877 556788999999999999999999863
No 6
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-44 Score=318.57 Aligned_cols=221 Identities=40% Similarity=0.718 Sum_probs=205.4
Q ss_pred ccCeEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCCeEE
Q 025107 28 KSCWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIF 107 (257)
Q Consensus 28 ~~~w~~~~~~~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL 107 (257)
...|+.|..+++.+..+++++++++++|+||.|.+++++.+|+.|.+||..|+++.+++.||||++|+|++.|++|++||
T Consensus 2 ~~~w~~e~~~~~~~~~~~v~~~l~~~ks~~q~i~i~~~~~~g~~l~ldg~~q~~e~de~~yhEml~h~~~~ah~~pk~VL 81 (282)
T COG0421 2 ADMWFTELYDPGLRLMFRVERVLYEEKSEYQDIEIFESEDFGKVLVLDGVVQLTERDEFIYHEMLAHVPLLAHPNPKRVL 81 (282)
T ss_pred CccceeeeecccccceeEeeeeeeeccCCceEEEEEeccccceEEEecChhhhccchhHHHHHHHHhchhhhCCCCCeEE
Confidence 46899999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCC
Q 025107 108 IMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPI 187 (257)
Q Consensus 108 ~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~ 187 (257)
+||+|+|++++++++|.+.+++++|||||+|+++||++|+....+..|||++++++||++|++...++||+||+|.++|.
T Consensus 82 iiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~tdp~ 161 (282)
T COG0421 82 IIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDSTDPV 161 (282)
T ss_pred EECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcCCCCC
Confidence 99999999999999999899999999999999999999986543334899999999999999998889999999999984
Q ss_pred CCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeecCc
Q 025107 188 EGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSY 253 (257)
Q Consensus 188 ~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~~ 253 (257)
+|+..|++.+||+. ++++|+|+|++++|+++| |.+.+....+.+.++++|+.+.+|....+
T Consensus 162 --gp~~~Lft~eFy~~-~~~~L~~~Gi~v~q~~~~--~~~~~~~~~~~~~~~~vf~~~~~~~~~ip 222 (282)
T COG0421 162 --GPAEALFTEEFYEG-CRRALKEDGIFVAQAGSP--FLQDEEIALAYRNVSRVFSIVPPYVAPIP 222 (282)
T ss_pred --CcccccCCHHHHHH-HHHhcCCCcEEEEecCCc--ccchHHHHHHHHHHHhhccccccceeccc
Confidence 78789999999999 699999999999998887 67778889999999999999988776443
No 7
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=100.00 E-value=4.3e-41 Score=297.30 Aligned_cols=217 Identities=37% Similarity=0.727 Sum_probs=199.1
Q ss_pred eEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEEe
Q 025107 31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMG 110 (257)
Q Consensus 31 w~~~~~~~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~IG 110 (257)
|+.|..+++.+..+.++++|++.+|+||+|.|++++++|++|++||..|+++.+++.|+++++|++++.+++|++||+||
T Consensus 1 w~~~~~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~~e~~y~e~l~~~~l~~~~~p~~VL~iG 80 (270)
T TIGR00417 1 WFTEYHDKNFGLTMKVKKVLYHEKSEFQDLEIFETEEFGNVLVLDGVVQTTERDEFIYHEMIAHVPLFTHPNPKHVLVIG 80 (270)
T ss_pred CceeecCCCceEEEEeeeEEEEccCCCeeEEEEEcCCCceEEEECCcccccCchHHHHHHHhhhhHhhcCCCCCEEEEEc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCC
Q 025107 111 GGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGG 190 (257)
Q Consensus 111 ~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~ 190 (257)
||+|+++++++++.+..++++||+|+++++.++++++.....+.+++++++++|++++++...++||+|++|++++. .
T Consensus 81 ~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~--~ 158 (270)
T TIGR00417 81 GGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVDSTDPV--G 158 (270)
T ss_pred CCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEeCCCCC--C
Confidence 99999999999987678999999999999999999875434467899999999999999887889999999998775 4
Q ss_pred cccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeecC
Q 025107 191 PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSS 252 (257)
Q Consensus 191 p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~ 252 (257)
+...|++.+|++. ++++|+|||+++++..+| +...+.+..+.++++++|+++.+|....
T Consensus 159 ~~~~l~~~ef~~~-~~~~L~pgG~lv~~~~~~--~~~~~~~~~~~~tl~~~F~~v~~~~~~v 217 (270)
T TIGR00417 159 PAETLFTKEFYEL-LKKALNEDGIFVAQSESP--WIQLELITDLKRDVKEAFPITEYYTANI 217 (270)
T ss_pred cccchhHHHHHHH-HHHHhCCCcEEEEcCCCc--ccCHHHHHHHHHHHHHHCCCeEEEEEEc
Confidence 5567999999999 799999999999997766 5678889999999999999999998743
No 8
>PRK01581 speE spermidine synthase; Validated
Probab=100.00 E-value=2.2e-40 Score=299.04 Aligned_cols=242 Identities=32% Similarity=0.455 Sum_probs=198.8
Q ss_pred eeecCCc-----ccccCCccCcCCC-Ccccc--CeEEeeeccccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcC
Q 025107 5 SCSNGIS-----QANGADAKNVALT-GYRKS--CWYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDG 76 (257)
Q Consensus 5 ~~~~~~~-----~~~~~~~~~~~~~-~~~~~--~w~~~~~~~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG 76 (257)
+-+.||. |-|...+|||-+- ..... .|- +.+ ...+..+..++|++++|+||+|.|+++.++ .|++||
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~vl~~~~S~yQ~I~I~et~~~--~L~LDG 124 (374)
T PRK01581 50 KQDRGIQYAETKQDNQVQSENVVIVPTDSHNLDIWD--EIS-LKEIQAGEHTNLFAEKSNYQNINLLQVSDI--RLYLDK 124 (374)
T ss_pred eeccCceeccCCccchhhccceEEeecCCCchhhhh--HHH-HHHHhhcccCEEEecCCCCceEEEEEcCCE--EEEECC
Confidence 3455664 4466667776542 22222 232 222 112223456899999999999999999976 699999
Q ss_pred cccccCCCchhHHHHHHHHHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh---hccCCC
Q 025107 77 KLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV---VNKEAF 153 (257)
Q Consensus 77 ~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~---~~~~~~ 153 (257)
.+|+++.||+.|||+++|+|++.+++|++||+||||+|++++++++++++.+|++||||++|+++|++++. .+...+
T Consensus 125 ~~Q~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~ 204 (374)
T PRK01581 125 QLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAF 204 (374)
T ss_pred eeccccccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccC
Confidence 99999999999999999999999999999999999999999999999878899999999999999998643 334556
Q ss_pred CCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHH
Q 025107 154 SDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSC 233 (257)
Q Consensus 154 ~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~ 233 (257)
.+||++++++||++|++...++||+|++|+++|.. .+...|++.+||+. ++++|+|||+++++.++| +..+..++.
T Consensus 205 ~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~-~~~~~LyT~EFy~~-~~~~LkPgGV~V~Qs~sp--~~~~~~~~~ 280 (374)
T PRK01581 205 FDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPAT-ELLSTLYTSELFAR-IATFLTEDGAFVCQSNSP--ADAPLVYWS 280 (374)
T ss_pred CCCceEEEECcHHHHHHhcCCCccEEEEcCCCccc-cchhhhhHHHHHHH-HHHhcCCCcEEEEecCCh--hhhHHHHHH
Confidence 79999999999999998888899999999988763 23468999999999 799999999999998877 556777889
Q ss_pred HHHHHhhhCCceEEEeecCccc
Q 025107 234 IYNTLRQVFKCGCCALFSSYSF 255 (257)
Q Consensus 234 ~~~~l~~~F~~v~~~~~~~~~~ 255 (257)
+.++|+++|+.+.+|.+.-++|
T Consensus 281 i~~tL~~af~~v~~y~t~vPsy 302 (374)
T PRK01581 281 IGNTIEHAGLTVKSYHTIVPSF 302 (374)
T ss_pred HHHHHHHhCCceEEEEEecCCC
Confidence 9999999999999998865443
No 9
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=100.00 E-value=1.7e-36 Score=268.85 Aligned_cols=210 Identities=31% Similarity=0.486 Sum_probs=187.8
Q ss_pred ceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEEeccchHHHHHH
Q 025107 41 RWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREI 120 (257)
Q Consensus 41 ~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l 120 (257)
++.+-.++|||..+|+||+|.|.+..+. ..|++||..|.+.+||..|||.++++++...+..++||++|+|+|..+|++
T Consensus 229 eqqlygdeIIh~~qspYQ~iVvTr~g~d-~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRel 307 (508)
T COG4262 229 EQQLYGDEIIHAIQSPYQRIVVTRRGDD-LRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLALREL 307 (508)
T ss_pred HHHhhcCceeeeccCccceEEEEEecCc-eEEEEcCceeeeechhhhhhheeeecccccccccceEEEEcCCchHHHHHH
Confidence 3445578999999999999999998763 789999999999999999999999999877788899999999999999999
Q ss_pred HhcCCCcEEEEEECCHHHHHHHHhhh---hhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCch
Q 025107 121 LRHKTVEKVVMCDIDEEVVEFCKSYL---VVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYT 197 (257)
Q Consensus 121 ~~~~~~~~v~~VEid~~vi~~a~~~~---~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t 197 (257)
+++|+..+|+.||+||+|++.+++.. ..|++++.|||+++++.||.+|+++..+.||+||+|.+||.... ...+|+
T Consensus 308 lkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps-~~rlYS 386 (508)
T COG4262 308 LKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPS-IGRLYS 386 (508)
T ss_pred HhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCCCCCcc-hhhhhh
Confidence 99988999999999999999999663 36778899999999999999999999999999999999987533 369999
Q ss_pred HHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeecCccc
Q 025107 198 KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSYSF 255 (257)
Q Consensus 198 ~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~~~~ 255 (257)
.|||.. ++++|+++|++++|.++| +..++.++++.+|+|++--.+.||..--|.|
T Consensus 387 ~eFY~l-l~~~l~e~Gl~VvQags~--y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTF 441 (508)
T COG4262 387 VEFYRL-LSRHLAETGLMVVQAGSP--YFTPRVFWRIDATIKSAGYRVWPYHVHVPTF 441 (508)
T ss_pred HHHHHH-HHHhcCcCceEEEecCCC--ccCCceeeeehhHHHhCcceeeeeEEecCcc
Confidence 999999 899999999999999998 7889999999999999877777776544333
No 10
>PRK03612 spermidine synthase; Provisional
Probab=100.00 E-value=1.3e-35 Score=283.70 Aligned_cols=220 Identities=32% Similarity=0.524 Sum_probs=188.8
Q ss_pred eEEeeeccccceeeeeccEEEEeecCCCcEEEEEecC-Ce--eEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCCeEE
Q 025107 31 WYEEEIEENLRWSFALNSILHTGETRYQDIALLDTKP-FG--KALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIF 107 (257)
Q Consensus 31 w~~~~~~~~~~~~~~~~~il~~~~s~~~~i~v~~~~~-~g--~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL 107 (257)
|..+.........+..++++++++|+||+|.|+++++ +| +.|++||.+|.++.|++.|||+++|++++.++++++||
T Consensus 223 ~~~~~~~~~~~~~~~~~~v~~~~~s~yq~i~v~~~~~~~~~~~~L~ldG~~q~s~~de~~y~e~l~~~~l~~~~~~~rVL 302 (521)
T PRK03612 223 VLADRIETTAEQLLYGDPVVYAEQTPYQRIVVTRRGNGRGPDLRLYLNGRLQFSSRDEYRYHEALVHPAMAASARPRRVL 302 (521)
T ss_pred HcccchhhHHHhHhccCeEEEEccCCCeEEEEEEecCCCCcceEEEECCEeeccCccHHHHHHHHHHHHHhhCCCCCeEE
Confidence 4444443344455667899999999999999999876 35 88999999999999999999999999999999999999
Q ss_pred EEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhh--h-hccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCC
Q 025107 108 IMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYL--V-VNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA 184 (257)
Q Consensus 108 ~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~--~-~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~ 184 (257)
+||||+|.+++++++++++.+|++||+||++++.+|+++ + .+...+++||++++++|++++++..+++||+|++|++
T Consensus 303 ~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~ 382 (521)
T PRK03612 303 VLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLP 382 (521)
T ss_pred EEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEEEEeCC
Confidence 999999999999999876689999999999999999954 3 3444567899999999999999887789999999998
Q ss_pred CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh-CCceEEEeecCccc
Q 025107 185 DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCGCCALFSSYSF 255 (257)
Q Consensus 185 ~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~~~~~~~ 255 (257)
++.... ..+++++||++. ++++|+|||++++|..+| +.+.+.++++.++++++ | .+.+|....++|
T Consensus 383 ~~~~~~-~~~L~t~ef~~~-~~~~L~pgG~lv~~~~~~--~~~~~~~~~i~~~l~~~gf-~v~~~~~~vps~ 449 (521)
T PRK03612 383 DPSNPA-LGKLYSVEFYRL-LKRRLAPDGLLVVQSTSP--YFAPKAFWSIEATLEAAGL-ATTPYHVNVPSF 449 (521)
T ss_pred CCCCcc-hhccchHHHHHH-HHHhcCCCeEEEEecCCc--ccchHHHHHHHHHHHHcCC-EEEEEEeCCCCc
Confidence 875322 258999999999 799999999999999877 56788899999999999 8 888888766665
No 11
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-36 Score=260.68 Aligned_cols=230 Identities=31% Similarity=0.581 Sum_probs=211.6
Q ss_pred CCCCccccCeEEeeec-----cccceeeeeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHH
Q 025107 22 ALTGYRKSCWYEEEIE-----ENLRWSFALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPA 96 (257)
Q Consensus 22 ~~~~~~~~~w~~~~~~-----~~~~~~~~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~ 96 (257)
+..+...++||.|... |+...++.++++++.++|.||++.|+++..+|++|.+||..|+++++++.|+||++|+|
T Consensus 36 s~h~~i~~GwF~e~~~~~~i~pg~a~tLkVe~vl~~ekS~~qdvlvf~s~tyg~vlvlDgviqlte~de~~Yqemi~~l~ 115 (337)
T KOG1562|consen 36 SSHPSIENGWFAEIHNKKDIWPGQALTLKVEKVLHDEKSDSQDVLVFESATYGKVLVLDGVIQLTERDEFAYQEMIAHLA 115 (337)
T ss_pred cccCcccCCeEeeecCCCCCCCCceeEEEeeeecccCchhHHHHHHHHHhhhheeeeeCCeeeCCccccccceeeeeccc
Confidence 5567788999998876 37888999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-CCc
Q 025107 97 LLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KES 175 (257)
Q Consensus 97 l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-~~~ 175 (257)
++.+++|++||+||+|+|+..++..+|+.+..++.+|||..+++..++|++....++.++++.++.+|+..|++.. .++
T Consensus 116 l~s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~ 195 (337)
T KOG1562|consen 116 LCSHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENP 195 (337)
T ss_pred cccCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCC
Confidence 9999999999999999999999999999899999999999999999999986555699999999999999999987 689
Q ss_pred eeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEee--cCc
Q 025107 176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALF--SSY 253 (257)
Q Consensus 176 fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~--~~~ 253 (257)
||+||+|..+|. +|+..+|.+.+|+. +++.||+||+++++..+. |.+.+..++..+..+.+|+.+....+ ++|
T Consensus 196 ~dVii~dssdpv--gpa~~lf~~~~~~~-v~~aLk~dgv~~~q~ec~--wl~~~~i~e~r~~~~~~f~~t~ya~ttvPTy 270 (337)
T KOG1562|consen 196 FDVIITDSSDPV--GPACALFQKPYFGL-VLDALKGDGVVCTQGECM--WLHLDYIKEGRSFCYVIFDLTAYAITTVPTY 270 (337)
T ss_pred ceEEEEecCCcc--chHHHHHHHHHHHH-HHHhhCCCcEEEEeccee--hHHHHHHHHHHHhHHHhcCccceeeecCCCC
Confidence 999999999987 78779999999999 899999999999998765 88899999999999999998776665 566
Q ss_pred ccc
Q 025107 254 SFF 256 (257)
Q Consensus 254 ~~~ 256 (257)
.|+
T Consensus 271 psg 273 (337)
T KOG1562|consen 271 PSG 273 (337)
T ss_pred ccc
Confidence 654
No 12
>PRK04457 spermidine synthase; Provisional
Probab=99.95 E-value=5.8e-27 Score=206.26 Aligned_cols=183 Identities=22% Similarity=0.383 Sum_probs=149.8
Q ss_pred EEEeecCCCcEEEEEecCCeeEEEEcCc-cccc----CCC--chhHHHHHHHHHhhcCCCCCeEEEEeccchHHHHHHHh
Q 025107 50 LHTGETRYQDIALLDTKPFGKALVIDGK-LQSA----EVD--EFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILR 122 (257)
Q Consensus 50 l~~~~s~~~~i~v~~~~~~g~~L~ldG~-~~~~----~~~--~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~ 122 (257)
+...++.|+.|.|+|... .|+|.+|+. .|+. .|. .+.|+++|. ..+...+++++||+||+|+|.+++.+++
T Consensus 9 ~~~~~~~~~~i~v~e~~~-~R~L~f~~~~~qs~~~~~~P~~l~~~y~~~m~-~~l~~~~~~~~vL~IG~G~G~l~~~l~~ 86 (262)
T PRK04457 9 LRPAKAGFPEVGVSEEGG-VRSLHLGSDTVQSSMRIDDPSELELAYTRAMM-GFLLFNPRPQHILQIGLGGGSLAKFIYT 86 (262)
T ss_pred hccccccCCCcEEEecCC-EEEEEECCCcceeeeecCCcccccCHHHHHHH-HHHhcCCCCCEEEEECCCHhHHHHHHHH
Confidence 334577899999999986 489999884 6765 233 346888776 3445567889999999999999999988
Q ss_pred cCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHH
Q 025107 123 HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYE 202 (257)
Q Consensus 123 ~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~ 202 (257)
+.+..+|++||+||++++.|+++|..+. .++|++++++|+++++....++||+|++|.+++. .++.++.+.+|++
T Consensus 87 ~~p~~~v~~VEidp~vi~~A~~~f~~~~---~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~~~--~~~~~l~t~efl~ 161 (262)
T PRK04457 87 YLPDTRQTAVEINPQVIAVARNHFELPE---NGERFEVIEADGAEYIAVHRHSTDVILVDGFDGE--GIIDALCTQPFFD 161 (262)
T ss_pred hCCCCeEEEEECCHHHHHHHHHHcCCCC---CCCceEEEECCHHHHHHhCCCCCCEEEEeCCCCC--CCccccCcHHHHH
Confidence 7666799999999999999999987653 3689999999999999877789999999998654 2335788999999
Q ss_pred HHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCce
Q 025107 203 FVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCG 245 (257)
Q Consensus 203 ~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v 245 (257)
. ++++|+|||++++|. +.....+..++++++++|+++
T Consensus 162 ~-~~~~L~pgGvlvin~-----~~~~~~~~~~l~~l~~~F~~~ 198 (262)
T PRK04457 162 D-CRNALSSDGIFVVNL-----WSRDKRYDRYLERLESSFEGR 198 (262)
T ss_pred H-HHHhcCCCcEEEEEc-----CCCchhHHHHHHHHHHhcCCc
Confidence 9 799999999999985 233445778899999999863
No 13
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.74 E-value=7e-17 Score=136.75 Aligned_cols=170 Identities=22% Similarity=0.276 Sum_probs=135.1
Q ss_pred eEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc
Q 025107 70 KALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN 149 (257)
Q Consensus 70 ~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~ 149 (257)
-++.+||..|.....+.++.+++.-+.+....+.++|||.+.|-|.++.++++. +..+|..||.||.|+++|+-+ +++
T Consensus 102 PTiEIdGIrMhrt~~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lN-PwS 179 (287)
T COG2521 102 PTIEIDGIRMHRTKGTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLN-PWS 179 (287)
T ss_pred CeEEEccEEEecccCcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccC-CCC
Confidence 468899987765555556777776666554456899999999999999999995 556999999999999999876 333
Q ss_pred cCCCCCCCeEEEEcchHHHHhcCC-CceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCC-CCC
Q 025107 150 KEAFSDPRLELVINDARAELESRK-ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGI-FSH 227 (257)
Q Consensus 150 ~~~~~~~rv~i~~~Da~~~l~~~~-~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~-~~~ 227 (257)
.+ +.+.+++++.+|+.+.++.-+ +.||+||.|++.-. .+.+||+.+||++ +.++|+|||.+.-..+.|+. ...
T Consensus 180 r~-l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS---~AgeLYseefY~E-l~RiLkrgGrlFHYvG~Pg~ryrG 254 (287)
T COG2521 180 RE-LFEIAIKIILGDAYEVVKDFDDESFDAIIHDPPRFS---LAGELYSEEFYRE-LYRILKRGGRLFHYVGNPGKRYRG 254 (287)
T ss_pred cc-ccccccEEecccHHHHHhcCCccccceEeeCCCccc---hhhhHhHHHHHHH-HHHHcCcCCcEEEEeCCCCccccc
Confidence 32 235689999999999998865 67999999998532 2358999999999 89999999999988888863 334
Q ss_pred hHHHHHHHHHHhhh-CCceE
Q 025107 228 TEVFSCIYNTLRQV-FKCGC 246 (257)
Q Consensus 228 ~~~~~~~~~~l~~~-F~~v~ 246 (257)
....+.+.+.|+++ |..|.
T Consensus 255 ~d~~~gVa~RLr~vGF~~v~ 274 (287)
T COG2521 255 LDLPKGVAERLRRVGFEVVK 274 (287)
T ss_pred CChhHHHHHHHHhcCceeee
Confidence 56788999999998 65444
No 14
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.64 E-value=7.4e-16 Score=117.52 Aligned_cols=110 Identities=20% Similarity=0.192 Sum_probs=85.5
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~ 181 (257)
++++||+||||+|.++.++++..+..+|++||++|++++.|++++.... ..+|++++++|+ .+.....++||+|++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~i~~~~~d~-~~~~~~~~~~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG---LSDRITFVQGDA-EFDPDFLEPFDLVIC 76 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT---TTTTEEEEESCC-HGGTTTSSCEEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEECcc-ccCcccCCCCCEEEE
Confidence 3579999999999999999994345799999999999999999984332 468999999999 555555678999999
Q ss_pred cC-CCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 182 DL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 182 D~-~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
.. .... .+. .-...++++. +++.|+|||+++++.
T Consensus 77 ~~~~~~~--~~~-~~~~~~~l~~-~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 77 SGFTLHF--LLP-LDERRRVLER-IRRLLKPGGRLVINT 111 (112)
T ss_dssp CSGSGGG--CCH-HHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred CCCcccc--ccc-hhHHHHHHHH-HHHhcCCCcEEEEEE
Confidence 87 2111 010 1123578898 799999999999863
No 15
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.57 E-value=1.8e-14 Score=110.72 Aligned_cols=111 Identities=26% Similarity=0.363 Sum_probs=85.7
Q ss_pred CeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCceeEEEEc
Q 025107 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIGD 182 (257)
Q Consensus 104 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fDvIi~D 182 (257)
.+|||+|||+|.++..+++.. ..+++++|+||..+++++++++... ..++++++++|.++.... ..++||+|++|
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNG---LDDRVEVIVGDARDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCT---TTTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHcc---CCceEEEEECchhhchhhccCceeEEEEEC
Confidence 589999999999999999976 5799999999999999999988653 356899999999998843 45889999999
Q ss_pred CCCCCC--CCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 183 LADPIE--GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 183 ~~~~~~--~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
++-... ......-...+|++. +.+.|+|||++++..
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~~-~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLEA-AARLLKPGGVLVFIT 115 (117)
T ss_dssp -STTSBTT----GGCHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred CCCccccccchhhHHHHHHHHHH-HHHHcCCCeEEEEEe
Confidence 974221 011112235689998 799999999998753
No 16
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.54 E-value=1.3e-13 Score=119.41 Aligned_cols=132 Identities=20% Similarity=0.294 Sum_probs=104.8
Q ss_pred cCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCC-Ccee
Q 025107 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-ESYD 177 (257)
Q Consensus 99 ~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~-~~fD 177 (257)
..+..++|||||+|.|.++..+++..+..+|++||+++++.+.|+++..++. -.+|++++++|..++.+... .+||
T Consensus 41 ~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~---l~~ri~v~~~Di~~~~~~~~~~~fD 117 (248)
T COG4123 41 PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNP---LEERIQVIEADIKEFLKALVFASFD 117 (248)
T ss_pred ccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCc---chhceeEehhhHHHhhhcccccccC
Confidence 3345789999999999999999997555799999999999999999998764 46899999999999987765 4699
Q ss_pred EEEEcCCC--CCCC---Cc-------ccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025107 178 VIIGDLAD--PIEG---GP-------CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (257)
Q Consensus 178 vIi~D~~~--~~~~---~p-------~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (257)
+|+++||- .... .+ ...+.-.++++. ++++|||||.+++- ..++.+.++...|++.
T Consensus 118 ~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~-a~~~lk~~G~l~~V-------~r~erl~ei~~~l~~~ 185 (248)
T COG4123 118 LIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRA-AAKLLKPGGRLAFV-------HRPERLAEIIELLKSY 185 (248)
T ss_pred EEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHH-HHHHccCCCEEEEE-------ecHHHHHHHHHHHHhc
Confidence 99999972 1111 11 112334578887 79999999999873 3467788999999983
No 17
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.53 E-value=4.4e-14 Score=116.62 Aligned_cols=130 Identities=18% Similarity=0.210 Sum_probs=93.5
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~ 181 (257)
..++|||+|||+|.++..++++.+..+|+++|+++.+++.+++++..++ -++++++..|..+.+. .++||+|++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~----~~~v~~~~~d~~~~~~--~~~fD~Iv~ 104 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNG----LENVEVVQSDLFEALP--DGKFDLIVS 104 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTT----CTTEEEEESSTTTTCC--TTCEEEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC----cccccccccccccccc--ccceeEEEE
Confidence 6789999999999999999998665689999999999999999998763 2239999999877654 589999999
Q ss_pred cCCCCCCCCcc-cCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEe
Q 025107 182 DLADPIEGGPC-YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCAL 249 (257)
Q Consensus 182 D~~~~~~~~p~-~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~ 249 (257)
++|-.. +.. ......+|++. +++.|+|||.+++-.... ... . +.+++.|..+....
T Consensus 105 NPP~~~--~~~~~~~~~~~~i~~-a~~~Lk~~G~l~lv~~~~---~~~---~---~~l~~~f~~~~~~~ 161 (170)
T PF05175_consen 105 NPPFHA--GGDDGLDLLRDFIEQ-ARRYLKPGGRLFLVINSH---LGY---E---RLLKELFGDVEVVA 161 (170)
T ss_dssp ---SBT--TSHCHHHHHHHHHHH-HHHHEEEEEEEEEEEETT---SCH---H---HHHHHHHS--EEEE
T ss_pred ccchhc--ccccchhhHHHHHHH-HHHhccCCCEEEEEeecC---CCh---H---HHHHHhcCCEEEEE
Confidence 987422 211 12235788998 799999999886543222 111 1 22777777776643
No 18
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.48 E-value=1.1e-12 Score=109.96 Aligned_cols=117 Identities=19% Similarity=0.261 Sum_probs=89.1
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
+++.+|||||||+|..+..+++..+..+|+++|+++.+++.|+++....+ -++++++.+|+.++-. .++||+|+
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~----l~~i~~~~~d~~~~~~--~~~fDlV~ 117 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG----LKNVTVVHGRAEEFGQ--EEKFDVVT 117 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC----CCCEEEEeccHhhCCC--CCCccEEE
Confidence 44789999999999999988875455799999999999999999887543 2359999999988533 57899999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHH
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTL 238 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l 238 (257)
++... . -.++++. +.+.|+|||++++..+.. ....+.++...+
T Consensus 118 ~~~~~----~------~~~~l~~-~~~~LkpGG~lv~~~~~~----~~~~l~~~~~~~ 160 (187)
T PRK00107 118 SRAVA----S------LSDLVEL-CLPLLKPGGRFLALKGRD----PEEEIAELPKAL 160 (187)
T ss_pred Ecccc----C------HHHHHHH-HHHhcCCCeEEEEEeCCC----hHHHHHHHHHhc
Confidence 97531 1 2478888 799999999999875332 234444444444
No 19
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.48 E-value=1.4e-12 Score=110.65 Aligned_cols=129 Identities=17% Similarity=0.154 Sum_probs=97.2
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh--cCCCceeEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE--SRKESYDVI 179 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~--~~~~~fDvI 179 (257)
+..+||+||||+|..+..+++..+..+|++||+++.+++.+++.+...+ .++++++++|+.+.+. ..+++||+|
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~----~~~v~~~~~d~~~~l~~~~~~~~~D~V 115 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG----LTNLRLLCGDAVEVLLDMFPDGSLDRI 115 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC----CCCEEEEecCHHHHHHHHcCccccceE
Confidence 5689999999999999999876555689999999999999999876442 3679999999944444 235789999
Q ss_pred EEcCCCCCCCCcc--cCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025107 180 IGDLADPIEGGPC--YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (257)
Q Consensus 180 i~D~~~~~~~~p~--~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (257)
++..++++...+. .......+++. ++++|+|||++++... ....+..+.+.+++.
T Consensus 116 ~~~~~~p~~~~~~~~~~~~~~~~l~~-i~~~LkpgG~l~i~~~------~~~~~~~~~~~~~~~ 172 (202)
T PRK00121 116 YLNFPDPWPKKRHHKRRLVQPEFLAL-YARKLKPGGEIHFATD------WEGYAEYMLEVLSAE 172 (202)
T ss_pred EEECCCCCCCccccccccCCHHHHHH-HHHHcCCCCEEEEEcC------CHHHHHHHHHHHHhC
Confidence 9987665522111 12235789999 7999999999998642 345566777777764
No 20
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.47 E-value=5.3e-12 Score=112.53 Aligned_cols=113 Identities=21% Similarity=0.277 Sum_probs=85.9
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~ 181 (257)
++++|||+|||+|.++..++++.+..+|+++|+++.+++.|++++..++ ...+++++.+|+.+.+. .++||+|++
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~---~~~~i~~~~~D~~~~~~--~~~fD~Iv~ 195 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHG---LEDRVTLIQSDLFAALP--GRKYDLIVS 195 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEECchhhccC--CCCccEEEE
Confidence 4579999999999999999987555699999999999999999987553 23589999999877652 357999999
Q ss_pred cCCC-CCC----------CCcccCC--------chHHHHHHHHcCcCCCCcEEEEecC
Q 025107 182 DLAD-PIE----------GGPCYKL--------YTKSFYEFVVKPRLNPEGIFVTQAG 220 (257)
Q Consensus 182 D~~~-~~~----------~~p~~~L--------~t~ef~~~~~~~~L~pgGil~~~~~ 220 (257)
|+|- +.. ..|...| +.+.+++. +.+.|+|||.+++..+
T Consensus 196 NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~-a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 196 NPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAE-AADHLNENGVLVVEVG 252 (284)
T ss_pred CCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHH-HHHhcCCCCEEEEEEC
Confidence 9862 110 0111111 12456777 6899999999999875
No 21
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.47 E-value=1.9e-12 Score=109.05 Aligned_cols=129 Identities=13% Similarity=0.168 Sum_probs=99.6
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CCCceeEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDVI 179 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~~~fDvI 179 (257)
+..++|+||||+|.++..+++..+..++++||+++.+++.|++.....+ -++++++.+|+.++... ..+.+|.|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~----l~ni~~i~~d~~~~~~~~~~~~~~d~v 91 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG----LKNLHVLCGDANELLDKFFPDGSLSKV 91 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC----CCCEEEEccCHHHHHHhhCCCCceeEE
Confidence 4568999999999999988886556799999999999999998876432 25899999999987643 23589999
Q ss_pred EEcCCCCCCCCc--ccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025107 180 IGDLADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (257)
Q Consensus 180 i~D~~~~~~~~p--~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (257)
+++.++||.... ...+...++++. ++++|+|||.+.+... ....+..+.+.+.+.
T Consensus 92 ~~~~pdpw~k~~h~~~r~~~~~~l~~-~~r~LkpgG~l~~~td------~~~~~~~~~~~~~~~ 148 (194)
T TIGR00091 92 FLNFPDPWPKKRHNKRRITQPHFLKE-YANVLKKGGVIHFKTD------NEPLFEDMLKVLSEN 148 (194)
T ss_pred EEECCCcCCCCCccccccCCHHHHHH-HHHHhCCCCEEEEEeC------CHHHHHHHHHHHHhC
Confidence 999988873211 123556789999 7999999999988653 234566666777664
No 22
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.45 E-value=1.8e-12 Score=110.68 Aligned_cols=105 Identities=26% Similarity=0.357 Sum_probs=89.1
Q ss_pred CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-cchHHHHhc-CCCcee
Q 025107 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELES-RKESYD 177 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~-~Da~~~l~~-~~~~fD 177 (257)
..+++||+||.+.|..+.+++.. +...+++.+|+|++..+.|++++...+ -+++++++. +|+.+.+.. ..+.||
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag---~~~~i~~~~~gdal~~l~~~~~~~fD 134 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG---VDDRIELLLGGDALDVLSRLLDGSFD 134 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC---CcceEEEEecCcHHHHHHhccCCCcc
Confidence 47899999999999999999885 336799999999999999999997554 467799999 699999986 568999
Q ss_pred EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
+||+|+.-+ ..++||+. +.+.|+|||++++.
T Consensus 135 liFIDadK~---------~yp~~le~-~~~lLr~GGliv~D 165 (219)
T COG4122 135 LVFIDADKA---------DYPEYLER-ALPLLRPGGLIVAD 165 (219)
T ss_pred EEEEeCChh---------hCHHHHHH-HHHHhCCCcEEEEe
Confidence 999997532 23688998 68899999999873
No 23
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.45 E-value=2.1e-12 Score=107.74 Aligned_cols=103 Identities=18% Similarity=0.241 Sum_probs=82.1
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~ 181 (257)
++++|||||||+|.++..++...+..+|++||+++.+++.++++....+ .++++++.+|+.++. ..++||+|++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~----~~~i~~i~~d~~~~~--~~~~fD~I~s 115 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG----LNNVEIVNGRAEDFQ--HEEQFDVITS 115 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC----CCCeEEEecchhhcc--ccCCccEEEe
Confidence 4789999999999999888765555789999999999999998876442 246999999998852 3578999999
Q ss_pred cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCC
Q 025107 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (257)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~ 221 (257)
+... . -.++++. +++.|+|||++++..++
T Consensus 116 ~~~~----~------~~~~~~~-~~~~LkpgG~lvi~~~~ 144 (181)
T TIGR00138 116 RALA----S------LNVLLEL-TLNLLKVGGYFLAYKGK 144 (181)
T ss_pred hhhh----C------HHHHHHH-HHHhcCCCCEEEEEcCC
Confidence 7521 1 1357787 79999999999987643
No 24
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.43 E-value=1.2e-12 Score=113.65 Aligned_cols=104 Identities=20% Similarity=0.234 Sum_probs=85.2
Q ss_pred CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-----CC
Q 025107 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----KE 174 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-----~~ 174 (257)
.++++||+||+|+|..+..+++. ++..+|+++|+|++.++.|++++...+ ...+++++.+|+.+.+... .+
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g---l~~~i~~~~gda~~~L~~l~~~~~~~ 143 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG---VDHKINFIQSDALSALDQLLNNDPKP 143 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEEccHHHHHHHHHhCCCCC
Confidence 46889999999999988888764 445799999999999999999997653 2468999999999987642 46
Q ss_pred ceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025107 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (257)
Q Consensus 175 ~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~ 217 (257)
+||+|++|+..+. -.++++. +.+.|+|||++++
T Consensus 144 ~fD~VfiDa~k~~---------y~~~~~~-~~~ll~~GG~ii~ 176 (234)
T PLN02781 144 EFDFAFVDADKPN---------YVHFHEQ-LLKLVKVGGIIAF 176 (234)
T ss_pred CCCEEEECCCHHH---------HHHHHHH-HHHhcCCCeEEEE
Confidence 8999999975321 1367888 6899999999986
No 25
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.42 E-value=1.5e-12 Score=100.45 Aligned_cols=105 Identities=21% Similarity=0.208 Sum_probs=83.6
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.+.++||++|||.|..+..+++..+..+|+++|+++..++.+++++...+ .++++++.+|+...+....++||+|+
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~D~v~ 93 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG----VSNIVIVEGDAPEALEDSLPEPDRVF 93 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC----CCceEEEeccccccChhhcCCCCEEE
Confidence 34579999999999999999986545799999999999999999876442 35789999998765544457899999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
++.... . ..++++. +++.|+|||.++++.
T Consensus 94 ~~~~~~--------~-~~~~l~~-~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 94 IGGSGG--------L-LQEILEA-IWRRLRPGGRIVLNA 122 (124)
T ss_pred ECCcch--------h-HHHHHHH-HHHHcCCCCEEEEEe
Confidence 975311 1 2478898 799999999999864
No 26
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.42 E-value=5.8e-13 Score=113.21 Aligned_cols=105 Identities=22% Similarity=0.331 Sum_probs=85.2
Q ss_pred CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-----CC
Q 025107 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----KE 174 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-----~~ 174 (257)
.+|++||+||++.|..+..+++. ++..+|+.+|+||+..+.|++++...+ .+.+++++.+||.+++.+. .+
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag---~~~~I~~~~gda~~~l~~l~~~~~~~ 120 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG---LDDRIEVIEGDALEVLPELANDGEEG 120 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT---GGGGEEEEES-HHHHHHHHHHTTTTT
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC---CCCcEEEEEeccHhhHHHHHhccCCC
Confidence 47899999999999999999974 556799999999999999999997543 2469999999999988642 25
Q ss_pred ceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 175 ~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
+||+||+|+.-. .-.++|+. +.+.|+|||++++.
T Consensus 121 ~fD~VFiDa~K~---------~y~~y~~~-~~~ll~~ggvii~D 154 (205)
T PF01596_consen 121 QFDFVFIDADKR---------NYLEYFEK-ALPLLRPGGVIIAD 154 (205)
T ss_dssp SEEEEEEESTGG---------GHHHHHHH-HHHHEEEEEEEEEE
T ss_pred ceeEEEEccccc---------chhhHHHH-HhhhccCCeEEEEc
Confidence 899999997421 12577888 68899999999984
No 27
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.41 E-value=8.9e-13 Score=106.47 Aligned_cols=106 Identities=22% Similarity=0.295 Sum_probs=83.3
Q ss_pred CCCeEEEEeccchHHHHHHH-hcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-CCceeEE
Q 025107 102 NPKTIFIMGGGEGSTAREIL-RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVI 179 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~-~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-~~~fDvI 179 (257)
+..+|||+|||+|.++..++ +..+..++++||+++++++.|++.+...+ -++++++.+|..+ +... .++||+|
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~----~~ni~~~~~d~~~-l~~~~~~~~D~I 77 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG----LDNIEFIQGDIED-LPQELEEKFDII 77 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT----STTEEEEESBTTC-GCGCSSTTEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc----ccccceEEeehhc-cccccCCCeeEE
Confidence 56899999999999999999 45556799999999999999999876442 3489999999999 5432 2789999
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
+++.+-.. . -...++++. +.+.|+++|++++..
T Consensus 78 ~~~~~l~~--~----~~~~~~l~~-~~~~lk~~G~~i~~~ 110 (152)
T PF13847_consen 78 ISNGVLHH--F----PDPEKVLKN-IIRLLKPGGILIISD 110 (152)
T ss_dssp EEESTGGG--T----SHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred EEcCchhh--c----cCHHHHHHH-HHHHcCCCcEEEEEE
Confidence 99865321 1 112467888 799999999998764
No 28
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.40 E-value=1.4e-11 Score=103.05 Aligned_cols=118 Identities=16% Similarity=0.158 Sum_probs=88.4
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
++..+|||||||+|.++..+++..+..+|+++|+++.+++.+++++...+ -++++++.+|+...+ .++||+|+
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~----~~~i~~~~~d~~~~~---~~~~D~v~ 102 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG----CGNIDIIPGEAPIEL---PGKADAIF 102 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC----CCCeEEEecCchhhc---CcCCCEEE
Confidence 46689999999999999999886555799999999999999999886442 247999999975433 35799999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (257)
++.... ...++++. +.+.|+|||.++++... .....++.+.+++.
T Consensus 103 ~~~~~~---------~~~~~l~~-~~~~Lk~gG~lv~~~~~------~~~~~~~~~~l~~~ 147 (187)
T PRK08287 103 IGGSGG---------NLTAIIDW-SLAHLHPGGRLVLTFIL------LENLHSALAHLEKC 147 (187)
T ss_pred ECCCcc---------CHHHHHHH-HHHhcCCCeEEEEEEec------HhhHHHHHHHHHHC
Confidence 874321 12567888 79999999999886421 22234555666653
No 29
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.40 E-value=1e-11 Score=115.34 Aligned_cols=140 Identities=22% Similarity=0.247 Sum_probs=97.2
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---CCCceeE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDV 178 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~---~~~~fDv 178 (257)
++++||++|||+|+++..++.. +..+|++||+++..++.|++++..++ +...+++++.+|++++++. ..++||+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ng--l~~~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNK--LDLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC--CCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 5689999999999998876663 45699999999999999999998764 2225899999999999864 2468999
Q ss_pred EEEcCCCCCCCCcccCCc-----hHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHH-HHHHhhhCCceEEEe
Q 025107 179 IIGDLADPIEGGPCYKLY-----TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCI-YNTLRQVFKCGCCAL 249 (257)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~-----t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~-~~~l~~~F~~v~~~~ 249 (257)
|++|||.-.. .. ..+. -.++++. +.++|+|||++++-+.+. ....+.+..+ .+...+.-..+....
T Consensus 297 VilDPP~f~~-~k-~~l~~~~~~y~~l~~~-a~~lLk~gG~lv~~scs~--~~~~~~f~~~v~~aa~~~~~~~~~l~ 368 (396)
T PRK15128 297 IVMDPPKFVE-NK-SQLMGACRGYKDINML-AIQLLNPGGILLTFSCSG--LMTSDLFQKIIADAAIDAGRDVQFIE 368 (396)
T ss_pred EEECCCCCCC-Ch-HHHHHHHHHHHHHHHH-HHHHcCCCeEEEEEeCCC--cCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 9999974110 11 1121 1244555 578999999998755443 2334434433 344444444555443
No 30
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.40 E-value=2.2e-11 Score=102.82 Aligned_cols=123 Identities=19% Similarity=0.133 Sum_probs=94.2
Q ss_pred CCCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025107 100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (257)
Q Consensus 100 ~~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv 178 (257)
..+..+|||+|||+|.++.++++. .+..+|+++|+++.+++.+++++..++ ..++++++.+|+.+++....++||.
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g---~~~~v~~~~~d~~~~l~~~~~~~D~ 114 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG---VLNNIVLIKGEAPEILFTINEKFDR 114 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC---CCCCeEEEEechhhhHhhcCCCCCE
Confidence 345679999999999999988764 344699999999999999999876542 1368999999999887665578999
Q ss_pred EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025107 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (257)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (257)
|+++.... . -.++++. +.+.|+|||.+++... ....+..+.+.|++.
T Consensus 115 V~~~~~~~---~------~~~~l~~-~~~~LkpgG~lv~~~~------~~~~~~~~~~~l~~~ 161 (198)
T PRK00377 115 IFIGGGSE---K------LKEIISA-SWEIIKKGGRIVIDAI------LLETVNNALSALENI 161 (198)
T ss_pred EEECCCcc---c------HHHHHHH-HHHHcCCCcEEEEEee------cHHHHHHHHHHHHHc
Confidence 99864211 1 2467888 7899999999987532 344566777777654
No 31
>PLN02476 O-methyltransferase
Probab=99.39 E-value=2.7e-12 Score=113.54 Aligned_cols=105 Identities=17% Similarity=0.257 Sum_probs=86.9
Q ss_pred CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-----CC
Q 025107 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-----KE 174 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-----~~ 174 (257)
.++++||+||+++|..+.++++. ++..+|+.+|+|++..+.|++++...+ ..++++++.+|+.+.|... .+
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG---l~~~I~li~GdA~e~L~~l~~~~~~~ 193 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG---VSHKVNVKHGLAAESLKSMIQNGEGS 193 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEEcCHHHHHHHHHhcccCC
Confidence 46899999999999999998874 345689999999999999999998653 3469999999999998642 36
Q ss_pred ceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 175 ~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
+||+||+|+..+. ..++|+. +.+.|+|||++++.
T Consensus 194 ~FD~VFIDa~K~~---------Y~~y~e~-~l~lL~~GGvIV~D 227 (278)
T PLN02476 194 SYDFAFVDADKRM---------YQDYFEL-LLQLVRVGGVIVMD 227 (278)
T ss_pred CCCEEEECCCHHH---------HHHHHHH-HHHhcCCCcEEEEe
Confidence 8999999975321 3577888 68999999999874
No 32
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.39 E-value=5.3e-12 Score=116.40 Aligned_cols=138 Identities=17% Similarity=0.202 Sum_probs=100.6
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC---CCceeE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYDV 178 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~---~~~fDv 178 (257)
+.++||++-|-||+.+..++. .+..+||.||++...++.|++++.+|+ +...++.++.+|+++|++.. +++||+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~-gGA~~vt~VD~S~~al~~a~~N~~LNg--~~~~~~~~i~~Dvf~~l~~~~~~g~~fDl 293 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAAL-GGASEVTSVDLSKRALEWARENAELNG--LDGDRHRFIVGDVFKWLRKAERRGEKFDL 293 (393)
T ss_pred cCCeEEEecccCcHHHHHHHh-cCCCceEEEeccHHHHHHHHHHHHhcC--CCccceeeehhhHHHHHHHHHhcCCcccE
Confidence 489999999999999999888 466799999999999999999999885 45678999999999999864 359999
Q ss_pred EEEcCCCCCCCCcccCCch-----HHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceE
Q 025107 179 IIGDLADPIEGGPCYKLYT-----KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGC 246 (257)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t-----~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~ 246 (257)
||+|||.-.. .+ ..++. .+.... +.++|+|||++++-.++.. .........+.+.+...-..+.
T Consensus 294 IilDPPsF~r-~k-~~~~~~~rdy~~l~~~-~~~iL~pgG~l~~~s~~~~-~~~~~f~~~i~~a~~~~~~~~~ 362 (393)
T COG1092 294 IILDPPSFAR-SK-KQEFSAQRDYKDLNDL-ALRLLAPGGTLVTSSCSRH-FSSDLFLEIIARAAAAAGRRAQ 362 (393)
T ss_pred EEECCccccc-Cc-ccchhHHHHHHHHHHH-HHHHcCCCCEEEEEecCCc-cCHHHHHHHHHHHHHhcCCcEE
Confidence 9999985221 22 12222 244455 4799999999998665442 2223334444444444433333
No 33
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=8.2e-12 Score=110.50 Aligned_cols=128 Identities=16% Similarity=0.181 Sum_probs=95.9
Q ss_pred CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025107 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (257)
Q Consensus 103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D 182 (257)
..+|||+|||.|.++..+++..+..++|.||+|...++.||++...|+ -++..++..|..+-+. ++||+|+++
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~----~~~~~v~~s~~~~~v~---~kfd~IisN 231 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANG----VENTEVWASNLYEPVE---GKFDLIISN 231 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcC----CCccEEEEeccccccc---ccccEEEeC
Confidence 449999999999999999998778899999999999999999998763 2233788888655543 499999999
Q ss_pred CCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEE
Q 025107 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCA 248 (257)
Q Consensus 183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~ 248 (257)
||-+..... .+-...++++. ++++|++||-|.+-... ...+...|++.|.++...
T Consensus 232 PPfh~G~~v-~~~~~~~~i~~-A~~~L~~gGeL~iVan~---------~l~y~~~L~~~Fg~v~~l 286 (300)
T COG2813 232 PPFHAGKAV-VHSLAQEIIAA-AARHLKPGGELWIVANR---------HLPYEKKLKELFGNVEVL 286 (300)
T ss_pred CCccCCcch-hHHHHHHHHHH-HHHhhccCCEEEEEEcC---------CCChHHHHHHhcCCEEEE
Confidence 985431111 12234589999 89999999976654321 113445688889877753
No 34
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.38 E-value=6.5e-12 Score=115.74 Aligned_cols=131 Identities=18% Similarity=0.216 Sum_probs=94.6
Q ss_pred CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025107 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (257)
Q Consensus 103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D 182 (257)
..+|||||||+|.++..+++..+..+|++||+++.+++.|++++..+... ...+++++.+|+...+. .++||+|+++
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~-~~~~v~~~~~D~l~~~~--~~~fDlIlsN 305 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE-ALDRCEFMINNALSGVE--PFRFNAVLCN 305 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcc-cCceEEEEEccccccCC--CCCEEEEEEC
Confidence 46999999999999999988655679999999999999999998755310 12478999999876542 3589999999
Q ss_pred CCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEE
Q 025107 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCC 247 (257)
Q Consensus 183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~ 247 (257)
++-+.......+ ...++++. ++++|+|||.+++-... . ......|++.|..+..
T Consensus 306 PPfh~~~~~~~~-ia~~l~~~-a~~~LkpGG~L~iV~nr-----~----l~y~~~L~~~fg~~~~ 359 (378)
T PRK15001 306 PPFHQQHALTDN-VAWEMFHH-ARRCLKINGELYIVANR-----H----LDYFHKLKKIFGNCTT 359 (378)
T ss_pred cCcccCccCCHH-HHHHHHHH-HHHhcccCCEEEEEEec-----C----cCHHHHHHHHcCCceE
Confidence 874321111111 23578888 79999999988875421 1 1234556777877765
No 35
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.37 E-value=4.5e-11 Score=110.85 Aligned_cols=177 Identities=15% Similarity=0.166 Sum_probs=107.7
Q ss_pred CCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECC
Q 025107 56 RYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDID 135 (257)
Q Consensus 56 ~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid 135 (257)
|.|.|.=.... +|..+.++-......++ ++.++...+...++..+|||||||+|.++..+++..+..+|+++|+|
T Consensus 210 PlqYIlG~~~F-~G~~f~V~p~vLIPRpe----TE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS 284 (423)
T PRK14966 210 PVAYILGVREF-YGRRFAVNPNVLIPRPE----TEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDIS 284 (423)
T ss_pred CceeEeeeeee-cCcEEEeCCCccCCCcc----HHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECC
Confidence 44444333322 35555555443333332 23333222222234569999999999999998875455799999999
Q ss_pred HHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC-CCC----------CCcccCCc--------
Q 025107 136 EEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD-PIE----------GGPCYKLY-------- 196 (257)
Q Consensus 136 ~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~-~~~----------~~p~~~L~-------- 196 (257)
+++++.|+++....+ .+++++.+|..+......++||+|++|+|- +.. ..|...|+
T Consensus 285 ~~ALe~AreNa~~~g-----~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~ 359 (423)
T PRK14966 285 PPALETARKNAADLG-----ARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSC 359 (423)
T ss_pred HHHHHHHHHHHHHcC-----CcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHH
Confidence 999999999986542 389999999866422223579999999972 110 01111222
Q ss_pred hHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh-CCceEEEee
Q 025107 197 TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCGCCALF 250 (257)
Q Consensus 197 t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~~ 250 (257)
-+.+++. +.+.|+|||.+++..+. .+.+ .+.+.+++. |..+....+
T Consensus 360 yr~Ii~~-a~~~LkpgG~lilEiG~----~Q~e---~V~~ll~~~Gf~~v~v~kD 406 (423)
T PRK14966 360 IRTLAQG-APDRLAEGGFLLLEHGF----DQGA---AVRGVLAENGFSGVETLPD 406 (423)
T ss_pred HHHHHHH-HHHhcCCCcEEEEEECc----cHHH---HHHHHHHHCCCcEEEEEEc
Confidence 1244444 46899999999887643 2333 344444443 665555443
No 36
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.36 E-value=2.1e-11 Score=109.86 Aligned_cols=112 Identities=20% Similarity=0.248 Sum_probs=85.5
Q ss_pred CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025107 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (257)
Q Consensus 103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D 182 (257)
+++|||+|||+|.++..+++..+..+|+++|+++.+++.|++++..++ ...+++++.+|+.+.+. .++||+|++|
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~---l~~~i~~~~~D~~~~l~--~~~fDlIvsN 208 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHG---LEDRVTLIESDLFAALP--GRRYDLIVSN 208 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCCcEEEEECchhhhCC--CCCccEEEEC
Confidence 378999999999999999886556799999999999999999987543 23579999999887653 3579999999
Q ss_pred CCC-CCC----------CCcccCCc--------hHHHHHHHHcCcCCCCcEEEEecC
Q 025107 183 LAD-PIE----------GGPCYKLY--------TKSFYEFVVKPRLNPEGIFVTQAG 220 (257)
Q Consensus 183 ~~~-~~~----------~~p~~~L~--------t~ef~~~~~~~~L~pgGil~~~~~ 220 (257)
+|- +.. ..|...|+ .+.+++. +.+.|+|||.+++..+
T Consensus 209 PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~-a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 209 PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAE-APDYLTEDGVLVVEVG 264 (307)
T ss_pred CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHH-HHHhcCCCCEEEEEEC
Confidence 862 110 01211121 2466777 6899999999999865
No 37
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.36 E-value=2.8e-11 Score=100.24 Aligned_cols=129 Identities=24% Similarity=0.238 Sum_probs=101.2
Q ss_pred HHHHHHHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH
Q 025107 90 ESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL 169 (257)
Q Consensus 90 e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l 169 (257)
++++. ..+...+...++|||||+|+++.+++...+..+|+++|-|++.++..+++.... .-++++++.+||-+.+
T Consensus 23 Ral~l-s~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~f----g~~n~~vv~g~Ap~~L 97 (187)
T COG2242 23 RALTL-SKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARF----GVDNLEVVEGDAPEAL 97 (187)
T ss_pred HHHHH-HhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh----CCCcEEEEeccchHhh
Confidence 44442 333334557899999999999999997666789999999999999999998754 2589999999999999
Q ss_pred hcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025107 170 ESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (257)
Q Consensus 170 ~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (257)
.... ++|.||+.-.. . -.+.++. +..+|+|||.+++|.. ..+.....++.+++.
T Consensus 98 ~~~~-~~daiFIGGg~-~---------i~~ile~-~~~~l~~ggrlV~nai------tlE~~~~a~~~~~~~ 151 (187)
T COG2242 98 PDLP-SPDAIFIGGGG-N---------IEEILEA-AWERLKPGGRLVANAI------TLETLAKALEALEQL 151 (187)
T ss_pred cCCC-CCCEEEECCCC-C---------HHHHHHH-HHHHcCcCCeEEEEee------cHHHHHHHHHHHHHc
Confidence 8654 89999997541 1 2467788 6899999999999963 345566777777765
No 38
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.36 E-value=2e-11 Score=112.42 Aligned_cols=130 Identities=16% Similarity=0.187 Sum_probs=102.0
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCceeEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI 179 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fDvI 179 (257)
.....+|+||||+|..+..+++..+...++++|+++.+++.+.+..... .-+++.++.+|++.++.. .++.+|.|
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~----gL~NV~~i~~DA~~ll~~~~~~s~D~I 196 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELL----NLKNLLIINYDARLLLELLPSNSVEKI 196 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc----CCCcEEEEECCHHHhhhhCCCCceeEE
Confidence 3456899999999999999998655679999999999999999887644 236799999999887643 35789999
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (257)
++..++||...+...+.+.+|++. ++++|+|||.+.+.+.. ...+..+.+.+.+.
T Consensus 197 ~lnFPdPW~KkrHRRlv~~~fL~e-~~RvLkpGG~l~l~TD~------~~y~~~~~e~~~~~ 251 (390)
T PRK14121 197 FVHFPVPWDKKPHRRVISEDFLNE-ALRVLKPGGTLELRTDS------ELYFEFSLELFLKL 251 (390)
T ss_pred EEeCCCCccccchhhccHHHHHHH-HHHHcCCCcEEEEEEEC------HHHHHHHHHHHHhC
Confidence 999888885333345677899999 89999999999987532 34555555555443
No 39
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.35 E-value=5.9e-11 Score=100.46 Aligned_cols=145 Identities=14% Similarity=0.094 Sum_probs=96.6
Q ss_pred cEEEEEecCCeeEEEE-cCcccccCCC-chhHHHHHHHHHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCH
Q 025107 59 DIALLDTKPFGKALVI-DGKLQSAEVD-EFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDE 136 (257)
Q Consensus 59 ~i~v~~~~~~g~~L~l-dG~~~~~~~~-~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~ 136 (257)
.++|+-.+..|+.|.. ++... .+. +..+...+..+ ....+..+|||+|||+|.++.+++... ..+|++||+++
T Consensus 12 ~mrIi~g~~~g~~l~~~~~~~~--Rp~~d~v~e~l~~~l--~~~~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~ 86 (199)
T PRK10909 12 QIRIIGGQWRGRKLPVPDSPGL--RPTTDRVRETLFNWL--APVIVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDR 86 (199)
T ss_pred CEEEEeeccCCCEeCCCCCCCc--CcCCHHHHHHHHHHH--hhhcCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCH
Confidence 4788877766776643 11111 111 11122222211 111345799999999999999866543 47999999999
Q ss_pred HHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHc--CcCCCCcE
Q 025107 137 EVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVK--PRLNPEGI 214 (257)
Q Consensus 137 ~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~--~~L~pgGi 214 (257)
+.++.+++++..++ -.+++++.+|+.+++....++||+|++|||-.. + +..+.++. +. ..|+|+++
T Consensus 87 ~a~~~a~~Nl~~~~----~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~--g-----~~~~~l~~-l~~~~~l~~~~i 154 (199)
T PRK10909 87 AVAQQLIKNLATLK----AGNARVVNTNALSFLAQPGTPHNVVFVDPPFRK--G-----LLEETINL-LEDNGWLADEAL 154 (199)
T ss_pred HHHHHHHHHHHHhC----CCcEEEEEchHHHHHhhcCCCceEEEECCCCCC--C-----hHHHHHHH-HHHCCCcCCCcE
Confidence 99999999987653 247999999999988544457999999987311 1 12333443 33 45899999
Q ss_pred EEEecC
Q 025107 215 FVTQAG 220 (257)
Q Consensus 215 l~~~~~ 220 (257)
+++...
T Consensus 155 v~ve~~ 160 (199)
T PRK10909 155 IYVESE 160 (199)
T ss_pred EEEEec
Confidence 998753
No 40
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.35 E-value=8.1e-11 Score=102.12 Aligned_cols=136 Identities=16% Similarity=0.233 Sum_probs=95.4
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
..+++|||+|||+|..+..+++..+..+++++|+++.+++.+++++...+ .++++++.+|+.+.+ ..++||+|+
T Consensus 86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~--~~~~fD~Vi 159 (251)
T TIGR03534 86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLG----LDNVTFLQSDWFEPL--PGGKFDLIV 159 (251)
T ss_pred cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC----CCeEEEEECchhccC--cCCceeEEE
Confidence 45679999999999999999986555699999999999999999886542 247999999987754 247899999
Q ss_pred EcCCCCCCC------------CcccCC--------chHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhh
Q 025107 181 GDLADPIEG------------GPCYKL--------YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (257)
Q Consensus 181 ~D~~~~~~~------------~p~~~L--------~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (257)
+|++-.... .|...+ .-..+++. +.+.|+|||.+++..+ +.+.. .+.+.|++
T Consensus 160 ~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~-~~~~L~~gG~~~~~~~----~~~~~---~~~~~l~~ 231 (251)
T TIGR03534 160 SNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQ-APRLLKPGGWLLLEIG----YDQGE---AVRALFEA 231 (251)
T ss_pred ECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHH-HHHhcccCCEEEEEEC----ccHHH---HHHHHHHh
Confidence 998621100 000000 01367787 6899999999998753 22333 34444444
Q ss_pred -hCCceEEEee
Q 025107 241 -VFKCGCCALF 250 (257)
Q Consensus 241 -~F~~v~~~~~ 250 (257)
-|..+..+..
T Consensus 232 ~gf~~v~~~~d 242 (251)
T TIGR03534 232 AGFADVETRKD 242 (251)
T ss_pred CCCCceEEEeC
Confidence 3766666544
No 41
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.34 E-value=1.2e-11 Score=108.27 Aligned_cols=106 Identities=22% Similarity=0.351 Sum_probs=83.2
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.++.+|||+|||+|..+..+++. + .+|+++|+++++++.|+++....+ ..++++++.+|+.+......++||+|+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~-g-~~v~~vD~s~~~l~~a~~~~~~~g---~~~~v~~~~~d~~~l~~~~~~~fD~V~ 117 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL-G-HQVILCDLSAEMIQRAKQAAEAKG---VSDNMQFIHCAAQDIAQHLETPVDLIL 117 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc-C-CEEEEEECCHHHHHHHHHHHHhcC---CccceEEEEcCHHHHhhhcCCCCCEEE
Confidence 45689999999999999999986 3 589999999999999999875432 246899999999886444557899999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
+...-.+...| ..+++. +.+.|+|||++++.
T Consensus 118 ~~~vl~~~~~~------~~~l~~-~~~~LkpgG~l~i~ 148 (255)
T PRK11036 118 FHAVLEWVADP------KSVLQT-LWSVLRPGGALSLM 148 (255)
T ss_pred ehhHHHhhCCH------HHHHHH-HHHHcCCCeEEEEE
Confidence 87542221122 467888 79999999999764
No 42
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=4.1e-11 Score=106.57 Aligned_cols=141 Identities=22% Similarity=0.317 Sum_probs=94.7
Q ss_pred eeEEEEcCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh
Q 025107 69 GKALVIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV 148 (257)
Q Consensus 69 g~~L~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~ 148 (257)
|..+.++-.+....++...-.+.+. .... ..+++|||||||+|.++..+++..+..+|+++||+|..++.|+++...
T Consensus 80 gl~~~v~~~vliPr~dTe~Lve~~l--~~~~-~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~ 156 (280)
T COG2890 80 GLRFKVDEGVLIPRPDTELLVEAAL--ALLL-QLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAER 156 (280)
T ss_pred ceeeeeCCCceecCCchHHHHHHHH--Hhhh-hcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHH
Confidence 4556566555444454332222221 1111 122279999999999999999987767999999999999999999886
Q ss_pred ccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC-CCC----------CCcccCCc--------hHHHHHHHHcCcC
Q 025107 149 NKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD-PIE----------GGPCYKLY--------TKSFYEFVVKPRL 209 (257)
Q Consensus 149 ~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~-~~~----------~~p~~~L~--------t~ef~~~~~~~~L 209 (257)
++ -.++.++.+|.++-+ .++||+|+++||- |.. ..|...|+ .+.|+.. +.+.|
T Consensus 157 ~~----l~~~~~~~~dlf~~~---~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~-a~~~l 228 (280)
T COG2890 157 NG----LVRVLVVQSDLFEPL---RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGE-APDIL 228 (280)
T ss_pred cC----CccEEEEeeeccccc---CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHh-hHHHc
Confidence 63 156667776755544 3599999999972 221 11211122 2456666 68999
Q ss_pred CCCcEEEEecC
Q 025107 210 NPEGIFVTQAG 220 (257)
Q Consensus 210 ~pgGil~~~~~ 220 (257)
+|+|++++..+
T Consensus 229 ~~~g~l~le~g 239 (280)
T COG2890 229 KPGGVLILEIG 239 (280)
T ss_pred CCCcEEEEEEC
Confidence 99999999875
No 43
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.34 E-value=2.8e-11 Score=104.73 Aligned_cols=106 Identities=19% Similarity=0.211 Sum_probs=85.0
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.++.+|||||||+|-++..+++..+..+|+++|+++.|++.+++.....+ -..++++.+||.+ |.-.++.||+|.
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~----~~~i~fv~~dAe~-LPf~D~sFD~vt 124 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKG----VQNVEFVVGDAEN-LPFPDNSFDAVT 124 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccC----ccceEEEEechhh-CCCCCCccCEEE
Confidence 46899999999999999999998667899999999999999999876331 1229999999866 456789999999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
+.-.-.+... -...+++ +.|+|||||++++.
T Consensus 125 ~~fglrnv~d------~~~aL~E-~~RVlKpgG~~~vl 155 (238)
T COG2226 125 ISFGLRNVTD------IDKALKE-MYRVLKPGGRLLVL 155 (238)
T ss_pred eeehhhcCCC------HHHHHHH-HHHhhcCCeEEEEE
Confidence 8754322111 2467888 79999999988765
No 44
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.34 E-value=5.6e-11 Score=105.91 Aligned_cols=112 Identities=21% Similarity=0.315 Sum_probs=84.2
Q ss_pred CeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcC
Q 025107 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL 183 (257)
Q Consensus 104 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~ 183 (257)
.+|||+|||+|.++..+++..+..+|+++|+++++++.|+++...++ ...+++++.+|..+.+. .++||+|++|+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~---~~~~v~~~~~d~~~~~~--~~~fDlIvsNP 190 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQ---LEHRVEFIQSNLFEPLA--GQKIDIIVSNP 190 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEECchhccCc--CCCccEEEECC
Confidence 68999999999999999987555799999999999999999986543 23579999999876542 24799999998
Q ss_pred CC-CCC----------CCcccCC--------chHHHHHHHHcCcCCCCcEEEEecCC
Q 025107 184 AD-PIE----------GGPCYKL--------YTKSFYEFVVKPRLNPEGIFVTQAGP 221 (257)
Q Consensus 184 ~~-~~~----------~~p~~~L--------~t~ef~~~~~~~~L~pgGil~~~~~~ 221 (257)
|- +.. ..|...| ..+.+++. +.+.|+|||++++..+.
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~-a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIEL-APDYLKPNGFLVCEIGN 246 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHH-HHHhccCCCEEEEEECc
Confidence 62 110 0111111 23456676 68899999999998753
No 45
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.33 E-value=9.7e-11 Score=103.23 Aligned_cols=135 Identities=19% Similarity=0.283 Sum_probs=93.9
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.++.+||++|||+|..+..+++..+..+++++|+++.+++.+++++... ...+++++.+|..+.+. .++||+|+
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~----~~~~i~~~~~d~~~~~~--~~~fD~Iv 180 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHG----LGARVEFLQGDWFEPLP--GGRFDLIV 180 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhC----CCCcEEEEEccccCcCC--CCceeEEE
Confidence 3567999999999999999998765679999999999999999988621 24689999999855432 46899999
Q ss_pred EcCCC-CCC-----------CCcccCCch--------HHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhh
Q 025107 181 GDLAD-PIE-----------GGPCYKLYT--------KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (257)
Q Consensus 181 ~D~~~-~~~-----------~~p~~~L~t--------~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (257)
++++- +.. ..|...++. ..+++. +.+.|+|||.+++..+. .+.. .+.+.+++
T Consensus 181 ~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~-~~~~Lk~gG~l~~e~g~----~~~~---~~~~~l~~ 252 (275)
T PRK09328 181 SNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQ-APRYLKPGGWLLLEIGY----DQGE---AVRALLAA 252 (275)
T ss_pred ECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHH-HHHhcccCCEEEEEECc----hHHH---HHHHHHHh
Confidence 99862 110 011112221 456666 57999999999997642 2233 34444443
Q ss_pred -hCCceEEEe
Q 025107 241 -VFKCGCCAL 249 (257)
Q Consensus 241 -~F~~v~~~~ 249 (257)
-|..+..+.
T Consensus 253 ~gf~~v~~~~ 262 (275)
T PRK09328 253 AGFADVETRK 262 (275)
T ss_pred CCCceeEEec
Confidence 366665543
No 46
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.32 E-value=1.2e-11 Score=108.34 Aligned_cols=99 Identities=18% Similarity=0.191 Sum_probs=79.4
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.++.+|||||||+|.+++.+++..+..+|+++|+++.+++.|++. +++++.+|+.++. ..++||+|+
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~~--~~~~fD~v~ 94 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----------GVDARTGDVRDWK--PKPDTDVVV 94 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----------CCcEEEcChhhCC--CCCCceEEE
Confidence 466899999999999999998864456999999999999999752 4788999987763 346899999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
+...-++. + -...+++. ++++|||||.+++..
T Consensus 95 ~~~~l~~~--~----d~~~~l~~-~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 95 SNAALQWV--P----EHADLLVR-WVDELAPGSWIAVQV 126 (255)
T ss_pred EehhhhhC--C----CHHHHHHH-HHHhCCCCcEEEEEc
Confidence 98764431 1 12567888 799999999998864
No 47
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=99.32 E-value=1.7e-12 Score=120.65 Aligned_cols=155 Identities=19% Similarity=0.217 Sum_probs=122.4
Q ss_pred hHHHHHH-HHHhhc------CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeE
Q 025107 87 IYHESLV-HPALLH------HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLE 159 (257)
Q Consensus 87 ~y~e~l~-~~~l~~------~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~ 159 (257)
.||.+|. ..++.. +....++|++|.|+|.+...+..+.+..++|+||+||++++.|++||.+.. +.|.+
T Consensus 273 ~~h~~m~~g~aL~~n~~~~~~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q----~~r~~ 348 (482)
T KOG2352|consen 273 QYHQMMIGGLALIMNRPPQKLDTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ----SDRNK 348 (482)
T ss_pred chhhhhhccceeccccCchhccccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh----hhhhh
Confidence 5777764 233332 234578999999999999998887666799999999999999999999873 34899
Q ss_pred EEEcchHHHHhcC------CCceeEEEEcCCCCCC---CCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHH
Q 025107 160 LVINDARAELESR------KESYDVIIGDLADPIE---GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEV 230 (257)
Q Consensus 160 i~~~Da~~~l~~~------~~~fDvIi~D~~~~~~---~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~ 230 (257)
+++.||.+|++++ +.+||+++.|.-++.. ..|+..+...+++.. ++..|.|.|++++|..+++ ...
T Consensus 349 V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~-~k~~l~p~g~f~inlv~r~----~~~ 423 (482)
T KOG2352|consen 349 VHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQP-VKMILPPRGMFIINLVTRN----SSF 423 (482)
T ss_pred hhHhhchHHHHHHhhccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHH-HhhccCccceEEEEEecCC----cch
Confidence 9999999999763 3579999999853221 134456778899999 8999999999999987663 456
Q ss_pred HHHHHHHHhhhCCceEEEee
Q 025107 231 FSCIYNTLRQVFKCGCCALF 250 (257)
Q Consensus 231 ~~~~~~~l~~~F~~v~~~~~ 250 (257)
..++...|+++||+++-+..
T Consensus 424 ~~~~~~~l~~vf~~l~~~~~ 443 (482)
T KOG2352|consen 424 KDEVLMNLAKVFPQLYHHQL 443 (482)
T ss_pred hHHHHHhhhhhhHHHhhhhc
Confidence 67888999999998876544
No 48
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.32 E-value=2.3e-11 Score=111.03 Aligned_cols=128 Identities=16% Similarity=0.179 Sum_probs=91.7
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~ 181 (257)
...+|||+|||+|.++..+++..+..+|+++|+++.+++.+++++..++ -..+++..|+...+ .++||+|++
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~-----l~~~~~~~D~~~~~---~~~fDlIvs 267 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANG-----LEGEVFASNVFSDI---KGRFDMIIS 267 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCEEEEccccccc---CCCccEEEE
Confidence 3468999999999999999987555689999999999999999887653 23577888876543 478999999
Q ss_pred cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEE
Q 025107 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCA 248 (257)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~ 248 (257)
+++-+..... ..-...++++. +++.|+|||.+++-... +. ..-..+.+.|+.+...
T Consensus 268 NPPFH~g~~~-~~~~~~~~i~~-a~~~LkpgG~L~iVan~---~l------~y~~~l~~~Fg~~~~l 323 (342)
T PRK09489 268 NPPFHDGIQT-SLDAAQTLIRG-AVRHLNSGGELRIVANA---FL------PYPDLLDETFGSHEVL 323 (342)
T ss_pred CCCccCCccc-cHHHHHHHHHH-HHHhcCcCCEEEEEEeC---CC------ChHHHHHHHcCCeEEE
Confidence 9864321111 01124688999 79999999988664422 11 1113455678777654
No 49
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=2.1e-11 Score=105.22 Aligned_cols=125 Identities=22% Similarity=0.318 Sum_probs=99.9
Q ss_pred CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
.+..+||+.|.|+|.++..+++. .+..+|+.+|+.++..+.|++++...+ + ..++++..+|..+.... +.||+|
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~--l-~d~v~~~~~Dv~~~~~~--~~vDav 167 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG--L-GDRVTLKLGDVREGIDE--EDVDAV 167 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc--c-ccceEEEeccccccccc--cccCEE
Confidence 45689999999999999999973 455799999999999999999997542 2 34599999999988654 499999
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh-CCceEEE
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCGCCA 248 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~ 248 (257)
++|.++|| ++++. +++.|+|||.+++.. |+ -+..+..+..|++. |-+...+
T Consensus 168 ~LDmp~PW-----------~~le~-~~~~Lkpgg~~~~y~--P~----veQv~kt~~~l~~~g~~~ie~~ 219 (256)
T COG2519 168 FLDLPDPW-----------NVLEH-VSDALKPGGVVVVYS--PT----VEQVEKTVEALRERGFVDIEAV 219 (256)
T ss_pred EEcCCChH-----------HHHHH-HHHHhCCCcEEEEEc--CC----HHHHHHHHHHHHhcCccchhhh
Confidence 99999887 45677 799999999999874 32 34456777777777 6555443
No 50
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.31 E-value=6.2e-11 Score=99.81 Aligned_cols=104 Identities=21% Similarity=0.210 Sum_probs=81.7
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.+..+|||+|||+|.++.++++..+..+|+++|+|+++++.+++++...+ .++++++.+|+.+.+......+|.|+
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~~~~~d~v~ 114 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG----VKNVEVIEGSAPECLAQLAPAPDRVC 114 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCCeEEEECchHHHHhhCCCCCCEEE
Confidence 35579999999999999998875445799999999999999999886442 25799999999875544344578888
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
++... + -.++++. +.+.|+|||.+++..
T Consensus 115 ~~~~~-----~-----~~~~l~~-~~~~LkpgG~li~~~ 142 (196)
T PRK07402 115 IEGGR-----P-----IKEILQA-VWQYLKPGGRLVATA 142 (196)
T ss_pred EECCc-----C-----HHHHHHH-HHHhcCCCeEEEEEe
Confidence 86421 1 2577888 789999999999875
No 51
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.31 E-value=1.7e-11 Score=106.96 Aligned_cols=105 Identities=14% Similarity=0.118 Sum_probs=86.8
Q ss_pred CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC------C
Q 025107 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR------K 173 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~------~ 173 (257)
.++++||+||++.|..+..++.. ++..+|+.+|+|++..+.|+++|...+ ..++++++.+|+.+.+... .
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag---~~~~I~~~~G~a~e~L~~l~~~~~~~ 154 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG---VAHKIDFREGPALPVLDQMIEDGKYH 154 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC---CCCceEEEeccHHHHHHHHHhccccC
Confidence 47889999999999999988864 445799999999999999999997553 2479999999999998762 2
Q ss_pred CceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 174 ~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
++||+||+|+... . ..++|+. +.+.|+|||++++.
T Consensus 155 ~~fD~iFiDadK~--------~-Y~~y~~~-~l~ll~~GGviv~D 189 (247)
T PLN02589 155 GTFDFIFVDADKD--------N-YINYHKR-LIDLVKVGGVIGYD 189 (247)
T ss_pred CcccEEEecCCHH--------H-hHHHHHH-HHHhcCCCeEEEEc
Confidence 6899999997521 1 2578888 58899999999863
No 52
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.31 E-value=8.1e-11 Score=112.71 Aligned_cols=113 Identities=22% Similarity=0.333 Sum_probs=83.2
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~ 181 (257)
++.+|||+|||+|.++..+++..+..+|+++|+|+.+++.|++++..++ ...+++++.+|..+.+. .++||+|++
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~---l~~~v~~~~~D~~~~~~--~~~fDlIvs 212 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYE---VTDRIQIIHSNWFENIE--KQKFDFIVS 212 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcC---CccceeeeecchhhhCc--CCCccEEEE
Confidence 3468999999999999988875445799999999999999999976442 23589999999876553 358999999
Q ss_pred cCCC-CCC-----------CCcccCCc----h----HHHHHHHHcCcCCCCcEEEEecC
Q 025107 182 DLAD-PIE-----------GGPCYKLY----T----KSFYEFVVKPRLNPEGIFVTQAG 220 (257)
Q Consensus 182 D~~~-~~~-----------~~p~~~L~----t----~ef~~~~~~~~L~pgGil~~~~~ 220 (257)
++|- +.. ..|...|+ . +.+++. +.+.|+|||.+++..+
T Consensus 213 NPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~-a~~~L~~gG~l~lEig 270 (506)
T PRK01544 213 NPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAEN-AKQFLKPNGKIILEIG 270 (506)
T ss_pred CCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHH-HHHhccCCCEEEEEEC
Confidence 9862 110 01211233 2 234455 5789999999998764
No 53
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.31 E-value=8.9e-11 Score=102.88 Aligned_cols=123 Identities=13% Similarity=0.142 Sum_probs=87.6
Q ss_pred CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCceeEEEE
Q 025107 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVIIG 181 (257)
Q Consensus 103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fDvIi~ 181 (257)
+.+|||+|||+|.++..+++..+..+|+++|+|+.+++.|++++..++ ++++.+|..+++.. ..++||+|++
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~-------~~~~~~D~~~~l~~~~~~~fDlVv~ 159 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG-------GTVHEGDLYDALPTALRGRVDILAA 159 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-------CEEEEeechhhcchhcCCCEeEEEE
Confidence 468999999999999998876444689999999999999999986541 47899999887643 2357999999
Q ss_pred cCCC-CCC-----------CCcccCCc--------hHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhh
Q 025107 182 DLAD-PIE-----------GGPCYKLY--------TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (257)
Q Consensus 182 D~~~-~~~-----------~~p~~~L~--------t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (257)
|+|- +.. ..|...|. .+.+++. +.+.|+|||.+++..+.. + ..++...|++
T Consensus 160 NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~-a~~~L~~gG~l~l~~~~~----~---~~~v~~~l~~ 230 (251)
T TIGR03704 160 NAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAG-APDWLAPGGHLLVETSER----Q---APLAVEAFAR 230 (251)
T ss_pred CCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHH-HHHhcCCCCEEEEEECcc----h---HHHHHHHHHH
Confidence 9862 211 01111121 2466666 689999999999875421 2 3355555654
No 54
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.31 E-value=6.2e-11 Score=101.93 Aligned_cols=107 Identities=13% Similarity=0.066 Sum_probs=82.1
Q ss_pred CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
.+.++|||+|||+|..+..+++. ++..+|+++|+++.+++.+++.+... ..++++++.+|+.+.. ...++||+|
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~~v~~~~~d~~~~~-~~~~~fD~V 118 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA----GLHNVELVHGNAMELP-FDDNSFDYV 118 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc----CCCceEEEEechhcCC-CCCCCccEE
Confidence 45689999999999999998875 34469999999999999999987533 2358999999987742 235789999
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
+++..-.+ .+ ...++++. +.++|+|||.+++..
T Consensus 119 ~~~~~l~~--~~----~~~~~l~~-~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 119 TIGFGLRN--VP----DYMQVLRE-MYRVVKPGGKVVCLE 151 (231)
T ss_pred EEeccccc--CC----CHHHHHHH-HHHHcCcCeEEEEEE
Confidence 98754322 11 12467888 799999999988643
No 55
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.31 E-value=3.1e-11 Score=119.81 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=89.3
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~ 181 (257)
++++||++|||+|+++..+++. +..+|++||+++.+++.|++++..++ +...+++++.+|++++++...++||+|++
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng--~~~~~v~~i~~D~~~~l~~~~~~fDlIil 614 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNG--LSGRQHRLIQADCLAWLKEAREQFDLIFI 614 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhC--CCccceEEEEccHHHHHHHcCCCcCEEEE
Confidence 5689999999999999999985 55689999999999999999998764 23358999999999999766678999999
Q ss_pred cCCCCCCCCcccCCc-----hHHHHHHHHcCcCCCCcEEEEecCC
Q 025107 182 DLADPIEGGPCYKLY-----TKSFYEFVVKPRLNPEGIFVTQAGP 221 (257)
Q Consensus 182 D~~~~~~~~p~~~L~-----t~ef~~~~~~~~L~pgGil~~~~~~ 221 (257)
|+|.-.........+ -.+.+.. +.++|+|||++++.+.+
T Consensus 615 DPP~f~~~~~~~~~~~~~~~y~~l~~~-a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 615 DPPTFSNSKRMEDSFDVQRDHVALIKD-AKRLLRPGGTLYFSNNK 658 (702)
T ss_pred CCCCCCCCCccchhhhHHHHHHHHHHH-HHHHcCCCCEEEEEeCC
Confidence 987421000000111 1356666 57899999999886543
No 56
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.30 E-value=1.5e-10 Score=103.31 Aligned_cols=130 Identities=19% Similarity=0.216 Sum_probs=94.6
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.++++|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++..++ ...++++..+|... ...++||+|+
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~---~~~~~~~~~~~~~~---~~~~~fDlVv 230 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQ---VSDRLQVKLIYLEQ---PIEGKADVIV 230 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcC---CCcceEEEeccccc---ccCCCceEEE
Confidence 45689999999999999888876 45799999999999999999987653 23467777776322 2346899999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeecCc
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSY 253 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~~ 253 (257)
.+.... . ..+++.. +.+.|+|||.+++..- . ......+.+.+++.|..+.......|
T Consensus 231 an~~~~----~-----l~~ll~~-~~~~LkpgG~li~sgi-----~-~~~~~~v~~~~~~~f~~~~~~~~~~W 287 (288)
T TIGR00406 231 ANILAE----V-----IKELYPQ-FSRLVKPGGWLILSGI-----L-ETQAQSVCDAYEQGFTVVEIRQREEW 287 (288)
T ss_pred EecCHH----H-----HHHHHHH-HHHHcCCCcEEEEEeC-----c-HhHHHHHHHHHHccCceeeEeccCCC
Confidence 985421 1 2467788 7999999999987531 1 23345666777766777666555555
No 57
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.30 E-value=2.2e-11 Score=106.57 Aligned_cols=101 Identities=18% Similarity=0.295 Sum_probs=81.5
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.++.+|||||||+|.++..+++..+..+|++||+++.+++.|++++ ++++++.+|+..+. ..++||+|+
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---------~~~~~~~~d~~~~~--~~~~fD~v~ 98 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---------PDCQFVEADIASWQ--PPQALDLIF 98 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---------CCCeEEECchhccC--CCCCccEEE
Confidence 4568999999999999999887655579999999999999999863 36789999987764 346899999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
++..-++. + -...+++. +.++|+|||.+++..
T Consensus 99 ~~~~l~~~--~----d~~~~l~~-~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 99 ANASLQWL--P----DHLELFPR-LVSLLAPGGVLAVQM 130 (258)
T ss_pred EccChhhC--C----CHHHHHHH-HHHhcCCCcEEEEEC
Confidence 98764331 1 13578898 799999999999875
No 58
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.29 E-value=1.6e-11 Score=103.36 Aligned_cols=110 Identities=16% Similarity=0.248 Sum_probs=89.7
Q ss_pred HHHHHHHHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH
Q 025107 89 HESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE 168 (257)
Q Consensus 89 ~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~ 168 (257)
.+.+.++|+ ..+.+|.|||||.|..+..+++..+...|+++|-|++|++.|++.+ |++++..+|.++|
T Consensus 20 ~dLla~Vp~---~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---------p~~~f~~aDl~~w 87 (257)
T COG4106 20 RDLLARVPL---ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---------PDATFEEADLRTW 87 (257)
T ss_pred HHHHhhCCc---cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---------CCCceecccHhhc
Confidence 455666665 4678999999999999999999877889999999999999998754 6789999999998
Q ss_pred HhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 169 l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
+.....|+|+.++.-.|. | . -.+.+.. +-..|+|||++++|.
T Consensus 88 --~p~~~~dllfaNAvlqWl--p-d---H~~ll~r-L~~~L~Pgg~LAVQm 129 (257)
T COG4106 88 --KPEQPTDLLFANAVLQWL--P-D---HPELLPR-LVSQLAPGGVLAVQM 129 (257)
T ss_pred --CCCCccchhhhhhhhhhc--c-c---cHHHHHH-HHHhhCCCceEEEEC
Confidence 345789999999876662 2 1 1345666 678999999999996
No 59
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.29 E-value=5.7e-11 Score=103.75 Aligned_cols=107 Identities=17% Similarity=0.292 Sum_probs=80.5
Q ss_pred CCCCeEEEEeccchHHHHHHHh--cCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025107 101 PNPKTIFIMGGGEGSTAREILR--HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~--~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv 178 (257)
++..+|||||||+|..+..+++ ..+..++++||+++.+++.|++++...+ ...+++++.+|+.+.. .+.+|+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~---~~~~v~~~~~d~~~~~---~~~~D~ 128 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK---APTPVDVIEGDIRDIA---IENASM 128 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEeCChhhCC---CCCCCE
Confidence 4668999999999999988876 2345799999999999999999886432 2358999999986642 245999
Q ss_pred EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
|++...-+.. .+ -....+++. +++.|+|||.+++.
T Consensus 129 vv~~~~l~~l-~~---~~~~~~l~~-i~~~LkpGG~l~l~ 163 (247)
T PRK15451 129 VVLNFTLQFL-EP---SERQALLDK-IYQGLNPGGALVLS 163 (247)
T ss_pred EehhhHHHhC-CH---HHHHHHHHH-HHHhcCCCCEEEEE
Confidence 9876542221 11 112568898 79999999999875
No 60
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.29 E-value=9.2e-11 Score=97.33 Aligned_cols=128 Identities=16% Similarity=0.185 Sum_probs=89.7
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.++++||++|||+|.++..+++... +|+++|+++.+++.+++++..++ .+++++.+|..+.. .++||+|+
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~-----~~~~~~~~d~~~~~---~~~fD~Vi 87 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNN-----VGLDVVMTDLFKGV---RGKFDVIL 87 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcC-----CceEEEEccccccc---CCcccEEE
Confidence 3567899999999999999988642 89999999999999999987542 36888999976643 35899999
Q ss_pred EcCCCCCCCCc-c--------------cCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh-CCc
Q 025107 181 GDLADPIEGGP-C--------------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKC 244 (257)
Q Consensus 181 ~D~~~~~~~~p-~--------------~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~ 244 (257)
++++-.....+ . .......+++. +.+.|+|||.+++..... .+ ...+.+.|++. |..
T Consensus 88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~Lk~gG~~~~~~~~~---~~---~~~~~~~l~~~gf~~ 160 (179)
T TIGR00537 88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDE-LPEILKEGGRVQLIQSSL---NG---EPDTFDKLDERGFRY 160 (179)
T ss_pred ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHh-HHHhhCCCCEEEEEEecc---CC---hHHHHHHHHhCCCeE
Confidence 99763111000 0 00113568888 799999999988754221 11 23555666554 443
Q ss_pred e
Q 025107 245 G 245 (257)
Q Consensus 245 v 245 (257)
.
T Consensus 161 ~ 161 (179)
T TIGR00537 161 E 161 (179)
T ss_pred E
Confidence 3
No 61
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.29 E-value=5.9e-12 Score=92.21 Aligned_cols=95 Identities=21% Similarity=0.227 Sum_probs=73.1
Q ss_pred EEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCC
Q 025107 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADP 186 (257)
Q Consensus 107 L~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~ 186 (257)
|+||||+|..+..++++ +..+++++|+++++++.+++... ..+++++.+|+.+. .-.++.||+|++...-.
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~-------~~~~~~~~~d~~~l-~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLK-------NEGVSFRQGDAEDL-PFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTT-------TSTEEEEESBTTSS-SS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccc-------ccCchheeehHHhC-cccccccccccccccee
Confidence 89999999999999998 45799999999999999999764 24566999998776 44568999999876422
Q ss_pred CCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025107 187 IEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (257)
Q Consensus 187 ~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~ 217 (257)
+. ---..++++ ++|.|||||.+++
T Consensus 72 ~~------~~~~~~l~e-~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 HL------EDPEAALRE-IYRVLKPGGRLVI 95 (95)
T ss_dssp GS------SHHHHHHHH-HHHHEEEEEEEEE
T ss_pred ec------cCHHHHHHH-HHHHcCcCeEEeC
Confidence 21 123578899 7999999999875
No 62
>PLN03075 nicotianamine synthase; Provisional
Probab=99.27 E-value=5.7e-11 Score=105.77 Aligned_cols=109 Identities=14% Similarity=0.188 Sum_probs=81.9
Q ss_pred CCCCeEEEEeccchHH-HHHHH-hcCCCcEEEEEECCHHHHHHHHhhhhh-ccCCCCCCCeEEEEcchHHHHhcCCCcee
Q 025107 101 PNPKTIFIMGGGEGST-AREIL-RHKTVEKVVMCDIDEEVVEFCKSYLVV-NKEAFSDPRLELVINDARAELESRKESYD 177 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~-~~~l~-~~~~~~~v~~VEid~~vi~~a~~~~~~-~~~~~~~~rv~i~~~Da~~~l~~~~~~fD 177 (257)
..|++|++||||.|.+ +..++ ++.+..+++++|+|++.++.||+++.. .+ -.++++|+.+|+.+... ..++||
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~g---L~~rV~F~~~Da~~~~~-~l~~FD 197 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPD---LSKRMFFHTADVMDVTE-SLKEYD 197 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccC---ccCCcEEEECchhhccc-ccCCcC
Confidence 3789999999997743 33333 355567999999999999999999853 22 35789999999988532 246899
Q ss_pred EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
+|++++-..+... .-.+.++. +++.|+|||++++..
T Consensus 198 lVF~~ALi~~dk~-----~k~~vL~~-l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 198 VVFLAALVGMDKE-----EKVKVIEH-LGKHMAPGALLMLRS 233 (296)
T ss_pred EEEEecccccccc-----cHHHHHHH-HHHhcCCCcEEEEec
Confidence 9999954333111 13578888 799999999999875
No 63
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.27 E-value=2.3e-10 Score=100.12 Aligned_cols=126 Identities=20% Similarity=0.215 Sum_probs=90.0
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.++++|||+|||+|.++..+.+. +..+|+++|+|+.+++.|++++..++ ...++.+..+|. +||+|+
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~-g~~~v~giDis~~~l~~A~~n~~~~~---~~~~~~~~~~~~---------~fD~Vv 184 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKL-GAKKVLAVDIDPQAVEAARENAELNG---VELNVYLPQGDL---------KADVIV 184 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcC---CCceEEEccCCC---------CcCEEE
Confidence 46789999999999999888775 34579999999999999999987653 123445444432 799999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh-CCceEEEeecCccc
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCGCCALFSSYSF 255 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~~~~~~~ 255 (257)
.+... .+ ...+++. +.++|+|||.+++..-. ......+.+.+++. |..........|..
T Consensus 185 ani~~----~~-----~~~l~~~-~~~~LkpgG~lilsgi~------~~~~~~v~~~l~~~Gf~~~~~~~~~~W~~ 244 (250)
T PRK00517 185 ANILA----NP-----LLELAPD-LARLLKPGGRLILSGIL------EEQADEVLEAYEEAGFTLDEVLERGEWVA 244 (250)
T ss_pred EcCcH----HH-----HHHHHHH-HHHhcCCCcEEEEEECc------HhhHHHHHHHHHHCCCEEEEEEEeCCEEE
Confidence 87532 11 2456777 78999999999986321 22345666777765 76666666666643
No 64
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.27 E-value=1.1e-11 Score=107.39 Aligned_cols=106 Identities=22% Similarity=0.230 Sum_probs=73.1
Q ss_pred CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
.++.+|||+|||+|.++..++++ .+..+|+++|+++.+++.|++.....+ ..+++++.+|+.+. .-.+++||+|
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~----~~~i~~v~~da~~l-p~~d~sfD~v 120 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG----LQNIEFVQGDAEDL-PFPDNSFDAV 120 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT------SEEEEE-BTTB---S-TT-EEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC----CCCeeEEEcCHHHh-cCCCCceeEE
Confidence 45689999999999999999886 334699999999999999999876442 24999999998774 4456899999
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
.+...-.+ -+ --...+++ ++|+|||||.+++-
T Consensus 121 ~~~fglrn--~~----d~~~~l~E-~~RVLkPGG~l~il 152 (233)
T PF01209_consen 121 TCSFGLRN--FP----DRERALRE-MYRVLKPGGRLVIL 152 (233)
T ss_dssp EEES-GGG---S----SHHHHHHH-HHHHEEEEEEEEEE
T ss_pred EHHhhHHh--hC----CHHHHHHH-HHHHcCCCeEEEEe
Confidence 98653221 11 12467888 79999999988754
No 65
>PLN02244 tocopherol O-methyltransferase
Probab=99.27 E-value=3.2e-11 Score=110.14 Aligned_cols=106 Identities=15% Similarity=0.203 Sum_probs=82.0
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.++++|||||||+|.++..+++..+ .+|++||+++.+++.+++.....+ ..++++++.+|+.+. ...+++||+|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g-~~v~gvD~s~~~i~~a~~~~~~~g---~~~~v~~~~~D~~~~-~~~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYG-ANVKGITLSPVQAARANALAAAQG---LSDKVSFQVADALNQ-PFEDGQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEEcCcccC-CCCCCCccEEE
Confidence 4568999999999999999998653 699999999999999998765432 246899999998764 23457899999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
+...... .+ -...++++ +.++|||||.+++.
T Consensus 192 s~~~~~h--~~----d~~~~l~e-~~rvLkpGG~lvi~ 222 (340)
T PLN02244 192 SMESGEH--MP----DKRKFVQE-LARVAAPGGRIIIV 222 (340)
T ss_pred ECCchhc--cC----CHHHHHHH-HHHHcCCCcEEEEE
Confidence 8543211 11 13578898 79999999998874
No 66
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.27 E-value=4.3e-11 Score=102.30 Aligned_cols=102 Identities=23% Similarity=0.216 Sum_probs=79.0
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
.+..+||+||||+|..+..+++..+ ..+|++||+++++++.|++++...+ ..+++++.+|+.+... ...+||+|
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g----~~~v~~~~~d~~~~~~-~~~~fD~I 150 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG----LDNVIVIVGDGTQGWE-PLAPYDRI 150 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC----CCCeEEEECCcccCCc-ccCCCCEE
Confidence 4568999999999999998888632 3579999999999999999987542 3579999999977543 23689999
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~ 220 (257)
+++...+. .| +. +.+.|+|||++++..+
T Consensus 151 i~~~~~~~--~~----------~~-~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 151 YVTAAGPK--IP----------EA-LIDQLKEGGILVMPVG 178 (215)
T ss_pred EEcCCccc--cc----------HH-HHHhcCcCcEEEEEEc
Confidence 99865322 11 33 4678999999998654
No 67
>PRK14967 putative methyltransferase; Provisional
Probab=99.26 E-value=2.6e-10 Score=98.01 Aligned_cols=109 Identities=16% Similarity=0.226 Sum_probs=80.5
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.+..+||++|||+|.++..+++. +..+|+++|+++.+++.+++++..++ .+++++.+|..+.+. .++||+|+
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~-----~~~~~~~~d~~~~~~--~~~fD~Vi 106 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAG-----VDVDVRRGDWARAVE--FRPFDVVV 106 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhC-----CeeEEEECchhhhcc--CCCeeEEE
Confidence 34579999999999999998886 34599999999999999999886542 358899999877643 46899999
Q ss_pred EcCCC-CCCC------Ccc--------cCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 181 GDLAD-PIEG------GPC--------YKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 181 ~D~~~-~~~~------~p~--------~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
+|++- +... .+. .......+++. +.+.|+|||++++-
T Consensus 107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDA-APALLAPGGSLLLV 158 (223)
T ss_pred ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHH-HHHhcCCCcEEEEE
Confidence 99752 1100 000 00012457777 78999999998874
No 68
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.26 E-value=5.5e-11 Score=105.66 Aligned_cols=130 Identities=15% Similarity=0.185 Sum_probs=89.0
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CCCceeE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDV 178 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~~~fDv 178 (257)
.+.++||++-|-+|+++..+++ .+..+|+.||++...++.+++++.+|+ ++..+++++.+|++++++. ..++||+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N~~lNg--~~~~~~~~~~~Dvf~~l~~~~~~~~fD~ 198 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAA-GGAKEVVSVDSSKRALEWAKENAALNG--LDLDRHRFIQGDVFKFLKRLKKGGRFDL 198 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHH-TTESEEEEEES-HHHHHHHHHHHHHTT---CCTCEEEEES-HHHHHHHHHHTT-EEE
T ss_pred cCCCceEEecCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcC--CCccceEEEecCHHHHHHHHhcCCCCCE
Confidence 3578999999999999998887 467799999999999999999999885 3457899999999999874 3579999
Q ss_pred EEEcCCCCCCCCcccCCchH---HHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHh
Q 025107 179 IIGDLADPIEGGPCYKLYTK---SFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLR 239 (257)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~---ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~ 239 (257)
||+|||.-.. +. ..+ .+ +.++. +.+.|+|||++++-+.++. ...+.+.+.++...
T Consensus 199 IIlDPPsF~k-~~-~~~-~~~y~~L~~~-a~~ll~~gG~l~~~scs~~--i~~~~l~~~~~~~a 256 (286)
T PF10672_consen 199 IILDPPSFAK-SK-FDL-ERDYKKLLRR-AMKLLKPGGLLLTCSCSHH--ISPDFLLEAVAEAA 256 (286)
T ss_dssp EEE--SSEES-ST-CEH-HHHHHHHHHH-HHHTEEEEEEEEEEE--TT--S-HHHHHHHHHHHH
T ss_pred EEECCCCCCC-CH-HHH-HHHHHHHHHH-HHHhcCCCCEEEEEcCCcc--cCHHHHHHHHHHhC
Confidence 9999984211 11 111 22 34555 5789999999887666552 34444444444333
No 69
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.25 E-value=4.2e-11 Score=101.76 Aligned_cols=101 Identities=20% Similarity=0.206 Sum_probs=77.6
Q ss_pred CCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
+..+||+||||+|..+..+++.. ...+|+++|+++++++.|++++...+ ...+++++.+|+.+.+.. ..+||+|+
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~---~~~~v~~~~~d~~~~~~~-~~~fD~Ii 147 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG---YWGVVEVYHGDGKRGLEK-HAPFDAII 147 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCcEEEEECCcccCCcc-CCCccEEE
Confidence 45799999999999998887753 23589999999999999999886442 234799999999876543 46899999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
++..... + .+. +.+.|+|||++++..
T Consensus 148 ~~~~~~~-------~-----~~~-l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 148 VTAAAST-------I-----PSA-LVRQLKDGGVLVIPV 173 (205)
T ss_pred EccCcch-------h-----hHH-HHHhcCcCcEEEEEE
Confidence 9865321 1 134 567899999998865
No 70
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.25 E-value=5.4e-11 Score=104.82 Aligned_cols=109 Identities=14% Similarity=0.022 Sum_probs=80.7
Q ss_pred CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
.++.+|||||||+|.++..+++. .+..+|+++|+++++++.|++....... ...++++++.+|+.+. .-.++.||+|
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~-~~~~~i~~~~~d~~~l-p~~~~sfD~V 149 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK-SCYKNIEWIEGDATDL-PFDDCYFDAI 149 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh-ccCCCeEEEEcccccC-CCCCCCEeEE
Confidence 45679999999999999888875 3346999999999999999987542110 1235899999998663 3345789999
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
++...-.+. + --..++++ +.++|||||.+++-
T Consensus 150 ~~~~~l~~~--~----d~~~~l~e-i~rvLkpGG~l~i~ 181 (261)
T PLN02233 150 TMGYGLRNV--V----DRLKAMQE-MYRVLKPGSRVSIL 181 (261)
T ss_pred EEecccccC--C----CHHHHHHH-HHHHcCcCcEEEEE
Confidence 986542221 1 12578898 79999999988764
No 71
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.25 E-value=2.9e-10 Score=94.57 Aligned_cols=148 Identities=19% Similarity=0.226 Sum_probs=102.4
Q ss_pred EEEEEecCCeeEE-EEcCcccccCCCchhHHHHHHHHHhhc-CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHH
Q 025107 60 IALLDTKPFGKAL-VIDGKLQSAEVDEFIYHESLVHPALLH-HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEE 137 (257)
Q Consensus 60 i~v~~~~~~g~~L-~ldG~~~~~~~~~~~y~e~l~~~~l~~-~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~ 137 (257)
++|+-.+..||.| +.+|. ...|....-.|.+.. .+.. .-...++||+-+|+|+++.|++.. +..+++.||.|.+
T Consensus 2 mRIi~G~~kgr~L~~p~~~--~~RPT~drVREalFN-il~~~~i~g~~~LDlFAGSGaLGlEAlSR-GA~~~~~vE~~~~ 77 (187)
T COG0742 2 MRIIGGKYKGRKLKTPDGP--GTRPTTDRVREALFN-ILAPDEIEGARVLDLFAGSGALGLEALSR-GAARVVFVEKDRK 77 (187)
T ss_pred eEEEeccccCCcccCCCCC--CcCCCchHHHHHHHH-hccccccCCCEEEEecCCccHhHHHHHhC-CCceEEEEecCHH
Confidence 4555555556655 34442 112222233455542 2222 246789999999999999999996 5789999999999
Q ss_pred HHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCc--eeEEEEcCCCCCCCCcccCCc--hHHHHHHHHcCcCCCCc
Q 025107 138 VVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKES--YDVIIGDLADPIEGGPCYKLY--TKSFYEFVVKPRLNPEG 213 (257)
Q Consensus 138 vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~--fDvIi~D~~~~~~~~p~~~L~--t~ef~~~~~~~~L~pgG 213 (257)
+..+.+++....+ ...+.+++..|+..+++....+ ||+|++|||-.. .+. ........-...|+|+|
T Consensus 78 a~~~l~~N~~~l~---~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~------~l~~~~~~~~~~~~~~~L~~~~ 148 (187)
T COG0742 78 AVKILKENLKALG---LEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAK------GLLDKELALLLLEENGWLKPGA 148 (187)
T ss_pred HHHHHHHHHHHhC---CccceEEEeecHHHHHHhcCCCCcccEEEeCCCCcc------chhhHHHHHHHHHhcCCcCCCc
Confidence 9999999987442 3478999999999998876655 999999997432 222 12222210257899999
Q ss_pred EEEEecC
Q 025107 214 IFVTQAG 220 (257)
Q Consensus 214 il~~~~~ 220 (257)
++++...
T Consensus 149 ~iv~E~~ 155 (187)
T COG0742 149 LIVVEHD 155 (187)
T ss_pred EEEEEeC
Confidence 9999864
No 72
>PLN02672 methionine S-methyltransferase
Probab=99.25 E-value=3.1e-10 Score=115.84 Aligned_cols=141 Identities=18% Similarity=0.135 Sum_probs=97.3
Q ss_pred CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCC------------CCCCCeEEEEcchHHHHh
Q 025107 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA------------FSDPRLELVINDARAELE 170 (257)
Q Consensus 103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~------------~~~~rv~i~~~Da~~~l~ 170 (257)
+++|||||||+|.++..+++..+..+|+++|+++++++.|+++...++-. ....|++++.+|..+.++
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999988655579999999999999999998754210 112589999999988875
Q ss_pred cCCCceeEEEEcCCC-CCC-----------CC---------cccCCch-----------HHHHHHHHcCcCCCCcEEEEe
Q 025107 171 SRKESYDVIIGDLAD-PIE-----------GG---------PCYKLYT-----------KSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 171 ~~~~~fDvIi~D~~~-~~~-----------~~---------p~~~L~t-----------~ef~~~~~~~~L~pgGil~~~ 218 (257)
....+||+|++++|- +.. .. |...|+. +.++.. +.+.|+|||.++++
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~-a~~~L~pgG~l~lE 277 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEE-GISVIKPMGIMIFN 277 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHH-HHHhccCCCEEEEE
Confidence 433479999999971 110 01 1123332 344455 46899999999999
Q ss_pred cCCCCCCCChHHHH-HHHHHHhhhCCceEEEee
Q 025107 219 AGPAGIFSHTEVFS-CIYNTLRQVFKCGCCALF 250 (257)
Q Consensus 219 ~~~~~~~~~~~~~~-~~~~~l~~~F~~v~~~~~ 250 (257)
.+. .+.+... ++++. .-|..+..|.+
T Consensus 278 iG~----~q~~~v~~~l~~~--~gf~~~~~~~~ 304 (1082)
T PLN02672 278 MGG----RPGQAVCERLFER--RGFRITKLWQT 304 (1082)
T ss_pred ECc----cHHHHHHHHHHHH--CCCCeeEEeee
Confidence 863 2333333 23332 23777776654
No 73
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=7.8e-11 Score=99.48 Aligned_cols=100 Identities=25% Similarity=0.300 Sum_probs=82.1
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.+..+||+||+|+|..+.-+++.. .+|+.||++++..+.|++++...+ -.++.++++|+...... ..+||.|+
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~lg----~~nV~v~~gDG~~G~~~-~aPyD~I~ 143 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLETLG----YENVTVRHGDGSKGWPE-EAPYDRII 143 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHHcC----CCceEEEECCcccCCCC-CCCcCEEE
Confidence 456899999999999999999974 499999999999999999987553 34699999999887643 47899999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~ 220 (257)
+.+.-+. .| +. +.+.|+|||++++-.+
T Consensus 144 Vtaaa~~--vP----------~~-Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 144 VTAAAPE--VP----------EA-LLDQLKPGGRLVIPVG 170 (209)
T ss_pred EeeccCC--CC----------HH-HHHhcccCCEEEEEEc
Confidence 9987543 34 23 4568999999998766
No 74
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.24 E-value=7.8e-11 Score=100.68 Aligned_cols=102 Identities=24% Similarity=0.243 Sum_probs=78.3
Q ss_pred CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
.+..+||+||||+|..+..+++.. ...+|+++|+++++++.+++++...+ -.+++++.+|+..... ...+||+|
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g----~~~v~~~~gd~~~~~~-~~~~fD~I 149 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG----YDNVEVIVGDGTLGYE-ENAPYDRI 149 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCeEEEECCcccCCC-cCCCcCEE
Confidence 456899999999999998887753 23699999999999999999887442 3579999999876542 24689999
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~ 220 (257)
+++..-+. . .+. +.+.|+|||++++..+
T Consensus 150 ~~~~~~~~--~----------~~~-l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 150 YVTAAGPD--I----------PKP-LIEQLKDGGIMVIPVG 177 (212)
T ss_pred EECCCccc--c----------hHH-HHHhhCCCcEEEEEEc
Confidence 99864221 1 134 4668999999988654
No 75
>PRK04266 fibrillarin; Provisional
Probab=99.22 E-value=2.5e-10 Score=98.54 Aligned_cols=138 Identities=15% Similarity=0.146 Sum_probs=93.8
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH--hcCCCceeE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL--ESRKESYDV 178 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l--~~~~~~fDv 178 (257)
.+..+|||+|||+|.++..+++..+..+|+++|+++.+++.+++.... .+++.++.+|+.... ....++||+
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~------~~nv~~i~~D~~~~~~~~~l~~~~D~ 144 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE------RKNIIPILADARKPERYAHVVEKVDV 144 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh------cCCcEEEECCCCCcchhhhccccCCE
Confidence 355799999999999999998864345899999999999877765431 257889999986421 111356999
Q ss_pred EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC--CCCCC-CChHHHHHHHHHHhhh-CCceEEEeecCc
Q 025107 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG--PAGIF-SHTEVFSCIYNTLRQV-FKCGCCALFSSY 253 (257)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~--~~~~~-~~~~~~~~~~~~l~~~-F~~v~~~~~~~~ 253 (257)
|++|..+++ . ...+++. +++.|||||.+++... +..+. .....++...+.+++. |..+.....+++
T Consensus 145 i~~d~~~p~--~------~~~~L~~-~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l~p~ 214 (226)
T PRK04266 145 IYQDVAQPN--Q------AEIAIDN-AEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDLEPY 214 (226)
T ss_pred EEECCCChh--H------HHHHHHH-HHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 999876433 1 1345677 7899999999887321 11100 1123445566777766 777776666555
No 76
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.21 E-value=7.1e-11 Score=106.91 Aligned_cols=104 Identities=13% Similarity=0.191 Sum_probs=80.3
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~ 181 (257)
+..+|||||||+|..+..+++. + .+|++||+++++++.|++++.... ...+++++.+|+.+.. ...++||+|++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~-g-~~V~GID~s~~~i~~Ar~~~~~~~---~~~~i~~~~~dae~l~-~~~~~FD~Vi~ 204 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM-G-ATVTGVDAVDKNVKIARLHADMDP---VTSTIEYLCTTAEKLA-DEGRKFDAVLS 204 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHHHhcC---cccceeEEecCHHHhh-hccCCCCEEEE
Confidence 3468999999999999888774 3 689999999999999998865432 2358999999987753 33578999998
Q ss_pred cCC-CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 182 DLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 182 D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
-.. .+. .. -.+|++. ++++|||||.+++..
T Consensus 205 ~~vLeHv-~d------~~~~L~~-l~r~LkPGG~liist 235 (322)
T PLN02396 205 LEVIEHV-AN------PAEFCKS-LSALTIPNGATVLST 235 (322)
T ss_pred hhHHHhc-CC------HHHHHHH-HHHHcCCCcEEEEEE
Confidence 543 221 11 2478898 799999999998764
No 77
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.20 E-value=1e-10 Score=98.84 Aligned_cols=103 Identities=13% Similarity=0.124 Sum_probs=77.9
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~ 181 (257)
++.+||++|||.|..+..+++. + .+|+++|+++.+++.+++.....+ ..+++++..|..++ ...++||+|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~-g-~~V~gvD~S~~~i~~a~~~~~~~~----~~~v~~~~~d~~~~--~~~~~fD~I~~ 101 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN-G-FDVTAWDKNPMSIANLERIKAAEN----LDNLHTAVVDLNNL--TFDGEYDFILS 101 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHHcC----CCcceEEecChhhC--CcCCCcCEEEE
Confidence 5689999999999999999985 3 599999999999999998876432 24688899997664 22467999998
Q ss_pred cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025107 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (257)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~ 217 (257)
...-... .+ -....+++. +++.|+|||.+++
T Consensus 102 ~~~~~~~-~~---~~~~~~l~~-i~~~LkpgG~~~~ 132 (197)
T PRK11207 102 TVVLMFL-EA---KTIPGLIAN-MQRCTKPGGYNLI 132 (197)
T ss_pred ecchhhC-CH---HHHHHHHHH-HHHHcCCCcEEEE
Confidence 7542221 11 123578888 7999999998543
No 78
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.20 E-value=8.2e-11 Score=98.38 Aligned_cols=109 Identities=19% Similarity=0.302 Sum_probs=80.2
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---CCCcee
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYD 177 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~---~~~~fD 177 (257)
.+..+|||+.+|+|+++.|++.+ +..+|+.||.|+..++..++++...+ ...+++++..|+..++.. ...+||
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSR-GA~~v~fVE~~~~a~~~i~~N~~~l~---~~~~~~v~~~d~~~~l~~~~~~~~~fD 116 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSR-GAKSVVFVEKNRKAIKIIKKNLEKLG---LEDKIRVIKGDAFKFLLKLAKKGEKFD 116 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHT----GGGEEEEESSHHHHHHHHHHCTS-EE
T ss_pred cCCCeEEEcCCccCccHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHHhC---CCcceeeeccCHHHHHHhhcccCCCce
Confidence 46789999999999999999985 67899999999999999999987432 234799999999998865 368999
Q ss_pred EEEEcCCCCCCCCcccCCchHHHHHHHH--cCcCCCCcEEEEecC
Q 025107 178 VIIGDLADPIEGGPCYKLYTKSFYEFVV--KPRLNPEGIFVTQAG 220 (257)
Q Consensus 178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~--~~~L~pgGil~~~~~ 220 (257)
+|++|||-.. .++-.+.++. + ...|+++|++++...
T Consensus 117 iIflDPPY~~------~~~~~~~l~~-l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 117 IIFLDPPYAK------GLYYEELLEL-LAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp EEEE--STTS------CHHHHHHHHH-HHHTTSEEEEEEEEEEEE
T ss_pred EEEECCCccc------chHHHHHHHH-HHHCCCCCCCEEEEEEec
Confidence 9999987322 1112344554 3 489999999999864
No 79
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.20 E-value=2.7e-10 Score=99.29 Aligned_cols=144 Identities=19% Similarity=0.233 Sum_probs=96.6
Q ss_pred chhHHHHHHHHH-hhcCCCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE
Q 025107 85 EFIYHESLVHPA-LLHHPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI 162 (257)
Q Consensus 85 ~~~y~e~l~~~~-l~~~~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~ 162 (257)
.-+|..-+..+. .+-..++.+||+.|.|+|+++..+++. .+..+|...|+.++-.+.|+++|...+ ...++++++
T Consensus 22 QIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g---l~~~v~~~~ 98 (247)
T PF08704_consen 22 QIIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG---LDDNVTVHH 98 (247)
T ss_dssp ----HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT---CCTTEEEEE
T ss_pred ceeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC---CCCCceeEe
Confidence 345654333222 223456789999999999999999974 445799999999999999999998653 356999999
Q ss_pred cchHH-HH-hcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcC-CCCcEEEEecCCCCCCCChHHHHHHHHHHh
Q 025107 163 NDARA-EL-ESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL-NPEGIFVTQAGPAGIFSHTEVFSCIYNTLR 239 (257)
Q Consensus 163 ~Da~~-~l-~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L-~pgGil~~~~~~~~~~~~~~~~~~~~~~l~ 239 (257)
.|..+ -. ......+|.|++|.++||.. +.. +++.| ++||++++.. |+ -+........|+
T Consensus 99 ~Dv~~~g~~~~~~~~~DavfLDlp~Pw~~-----------i~~-~~~~L~~~gG~i~~fs--P~----ieQv~~~~~~L~ 160 (247)
T PF08704_consen 99 RDVCEEGFDEELESDFDAVFLDLPDPWEA-----------IPH-AKRALKKPGGRICCFS--PC----IEQVQKTVEALR 160 (247)
T ss_dssp S-GGCG--STT-TTSEEEEEEESSSGGGG-----------HHH-HHHHE-EEEEEEEEEE--SS----HHHHHHHHHHHH
T ss_pred cceecccccccccCcccEEEEeCCCHHHH-----------HHH-HHHHHhcCCceEEEEC--CC----HHHHHHHHHHHH
Confidence 99853 22 22346899999999998832 345 68889 8999999874 32 344556667777
Q ss_pred hh-CCceEEEe
Q 025107 240 QV-FKCGCCAL 249 (257)
Q Consensus 240 ~~-F~~v~~~~ 249 (257)
+. |..+..+.
T Consensus 161 ~~gf~~i~~~E 171 (247)
T PF08704_consen 161 EHGFTDIETVE 171 (247)
T ss_dssp HTTEEEEEEEE
T ss_pred HCCCeeeEEEE
Confidence 63 66665443
No 80
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.20 E-value=1.1e-10 Score=99.51 Aligned_cols=128 Identities=21% Similarity=0.319 Sum_probs=90.4
Q ss_pred CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH------h-cC
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL------E-SR 172 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l------~-~~ 172 (257)
.+..+|||||||+|..+..+++.. +..+|++||+++. . ..++++++.+|+.+.- . ..
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~----~~~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------D----PIVGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------c----CCCCcEEEecCCCChHHHHHHHHHhC
Confidence 456799999999999999988863 3358999999981 1 1256899999987641 1 13
Q ss_pred CCceeEEEEcCCCCCCCCcccC-C----chHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEE
Q 025107 173 KESYDVIIGDLADPIEGGPCYK-L----YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCC 247 (257)
Q Consensus 173 ~~~fDvIi~D~~~~~~~~p~~~-L----~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~ 247 (257)
.+.||+|++|....+...+... . ...++++. +.+.|+|||.+++.. + ..+.+.+++..+++.|..+.+
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~-~~~~LkpGG~~vi~~-----~-~~~~~~~~l~~l~~~f~~v~~ 187 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDM-CRDVLAPGGSFVVKV-----F-QGEGFDEYLREIRSLFTKVKV 187 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHH-HHHHcCCCCEEEEEE-----e-cCcCHHHHHHHHHhCceEEEE
Confidence 4789999999743221111100 0 12467888 799999999999853 1 233466778889999999988
Q ss_pred Eee
Q 025107 248 ALF 250 (257)
Q Consensus 248 ~~~ 250 (257)
+..
T Consensus 188 ~Kp 190 (209)
T PRK11188 188 RKP 190 (209)
T ss_pred ECC
Confidence 765
No 81
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.20 E-value=6.7e-11 Score=101.28 Aligned_cols=104 Identities=15% Similarity=0.197 Sum_probs=79.4
Q ss_pred CeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcC
Q 025107 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL 183 (257)
Q Consensus 104 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~ 183 (257)
++||+||||.|..+..+++..+..+++++|+++++++.+++++...+ ..++++++..|..+.. ..++||+|++..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~g---l~~~i~~~~~d~~~~~--~~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALG---LQGRIRIFYRDSAKDP--FPDTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC---CCcceEEEecccccCC--CCCCCCEeehHH
Confidence 58999999999999999886544689999999999999999876432 3468999999975431 246899999754
Q ss_pred CCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 184 ~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
.-.. .+ . ...+++. +++.|+|||.+++..
T Consensus 76 ~l~~--~~--~--~~~~l~~-~~~~LkpgG~l~i~~ 104 (224)
T smart00828 76 VIHH--IK--D--KMDLFSN-ISRHLKDGGHLVLAD 104 (224)
T ss_pred HHHh--CC--C--HHHHHHH-HHHHcCCCCEEEEEE
Confidence 3211 11 1 3578998 799999999998753
No 82
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.20 E-value=2.4e-11 Score=91.41 Aligned_cols=96 Identities=24% Similarity=0.427 Sum_probs=71.0
Q ss_pred EEEEeccchHHHHHHHhcC---CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE-
Q 025107 106 IFIMGGGEGSTAREILRHK---TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG- 181 (257)
Q Consensus 106 VL~IG~G~G~~~~~l~~~~---~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~- 181 (257)
||++|||+|..++.+.+.. +..++++||+++++++.+++++... ..+++++.+|+.++ ....++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~-----~~~~~~~~~D~~~l-~~~~~~~D~v~~~ 74 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED-----GPKVRFVQADARDL-PFSDGKFDLVVCS 74 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT-----TTTSEEEESCTTCH-HHHSSSEEEEEE-
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc-----CCceEEEECCHhHC-cccCCCeeEEEEc
Confidence 7999999999999999763 2269999999999999999987643 24899999999884 445679999999
Q ss_pred cC-CCCCCCCcccCCchHHHHHHHHcCcCCCCc
Q 025107 182 DL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEG 213 (257)
Q Consensus 182 D~-~~~~~~~p~~~L~t~ef~~~~~~~~L~pgG 213 (257)
.. .... .+ -....+++. +.++|+|||
T Consensus 75 ~~~~~~~--~~---~~~~~ll~~-~~~~l~pgG 101 (101)
T PF13649_consen 75 GLSLHHL--SP---EELEALLRR-IARLLRPGG 101 (101)
T ss_dssp TTGGGGS--SH---HHHHHHHHH-HHHTEEEEE
T ss_pred CCccCCC--CH---HHHHHHHHH-HHHHhCCCC
Confidence 33 2211 11 113578888 799999998
No 83
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.19 E-value=3.1e-10 Score=95.79 Aligned_cols=126 Identities=18% Similarity=0.201 Sum_probs=97.4
Q ss_pred eEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CCCceeEEEEc
Q 025107 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDVIIGD 182 (257)
Q Consensus 105 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~~~fDvIi~D 182 (257)
-+|+||||.|..+.++++..+...+.++|+....+..+.+..... .-+++.++.+||..++.. .++..|-|.+.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~----~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKR----GLKNVRFLRGDARELLRRLFPPGSVDRIYIN 95 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHH----TTSSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhh----cccceEEEEccHHHHHhhcccCCchheEEEe
Confidence 799999999999999888766789999999999999888877544 357999999999998865 34789999999
Q ss_pred CCCCCCCCc--ccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025107 183 LADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (257)
Q Consensus 183 ~~~~~~~~p--~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (257)
-|+||.... ...|.+.+|+.. ++++|+|||.+.+.+. ....+..+.+.+.+.
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~~-~~~~L~~gG~l~~~TD------~~~y~~~~~~~~~~~ 149 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLEL-LARVLKPGGELYFATD------VEEYAEWMLEQFEES 149 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHHH-HHHHEEEEEEEEEEES-------HHHHHHHHHHHHHH
T ss_pred CCCCCcccchhhhhcCCchHHHH-HHHHcCCCCEEEEEeC------CHHHHHHHHHHHHhc
Confidence 999984221 247899999999 8999999999988763 356777788888875
No 84
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.19 E-value=2.3e-10 Score=99.17 Aligned_cols=108 Identities=19% Similarity=0.290 Sum_probs=80.9
Q ss_pred CCCCeEEEEeccchHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv 178 (257)
++..+|||||||+|..+..++++ .+..+++++|+++.+++.|++++.... ...+++++.+|+.++- .+.+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~---~~~~v~~~~~d~~~~~---~~~~d~ 125 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH---SEIPVEILCNDIRHVE---IKNASM 125 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEECChhhCC---CCCCCE
Confidence 45678999999999999988874 235799999999999999999875321 2457999999987652 245898
Q ss_pred EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
|++...-++. .+ -....+++. ++++|+|||.+++..
T Consensus 126 v~~~~~l~~~-~~---~~~~~~l~~-i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 126 VILNFTLQFL-PP---EDRIALLTK-IYEGLNPNGVLVLSE 161 (239)
T ss_pred EeeecchhhC-CH---HHHHHHHHH-HHHhcCCCeEEEEee
Confidence 8876542221 11 012578898 799999999998753
No 85
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.18 E-value=9e-10 Score=92.57 Aligned_cols=107 Identities=19% Similarity=0.103 Sum_probs=82.2
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC---CCceeE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYDV 178 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~---~~~fDv 178 (257)
..++|||++||+|+++.+++.+ +..+|++||+|+..++.+++++..++ ...+++++.+|+.++++.. ...||+
T Consensus 49 ~g~~vLDLfaGsG~lglea~sr-ga~~v~~vE~~~~a~~~~~~N~~~~~---~~~~~~~~~~D~~~~l~~~~~~~~~~dv 124 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSR-GAKVAFLEEDDRKANQTLKENLALLK---SGEQAEVVRNSALRALKFLAKKPTFDNV 124 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHhC---CcccEEEEehhHHHHHHHhhccCCCceE
Confidence 5689999999999999999996 45699999999999999999987653 2347999999999988642 234899
Q ss_pred EEEcCCCCCCCCcccCCchHHHHHHHH-cCcCCCCcEEEEec
Q 025107 179 IIGDLADPIEGGPCYKLYTKSFYEFVV-KPRLNPEGIFVTQA 219 (257)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~-~~~L~pgGil~~~~ 219 (257)
|++|||-.. .+ ..+.+..+. ...|+++|++++..
T Consensus 125 v~~DPPy~~------~~-~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 125 IYLDPPFFN------GA-LQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred EEECcCCCC------Cc-HHHHHHHHHHCCCCCCCeEEEEEe
Confidence 999987422 11 233333311 46899999999875
No 86
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.17 E-value=9.8e-11 Score=100.40 Aligned_cols=103 Identities=17% Similarity=0.216 Sum_probs=77.8
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
...++|||+|||+|.++..+++. + .+|+++|++++.++.|+.+...+. -.++.......+.... .++||+|+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~-G-a~VtgiD~se~~I~~Ak~ha~e~g-----v~i~y~~~~~edl~~~-~~~FDvV~ 129 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL-G-ASVTGIDASEKPIEVAKLHALESG-----VNIDYRQATVEDLASA-GGQFDVVT 129 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC-C-CeeEEecCChHHHHHHHHhhhhcc-----ccccchhhhHHHHHhc-CCCccEEE
Confidence 36789999999999999999996 4 799999999999999999876442 2345666666555433 48999998
Q ss_pred EcCC-CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 181 ~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
+--- .+. ..| ..|++. +.+++||||++++..
T Consensus 130 cmEVlEHv-~dp------~~~~~~-c~~lvkP~G~lf~ST 161 (243)
T COG2227 130 CMEVLEHV-PDP------ESFLRA-CAKLVKPGGILFLST 161 (243)
T ss_pred EhhHHHcc-CCH------HHHHHH-HHHHcCCCcEEEEec
Confidence 7532 222 122 358888 699999999998753
No 87
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.17 E-value=8e-12 Score=93.44 Aligned_cols=98 Identities=18% Similarity=0.226 Sum_probs=59.1
Q ss_pred EEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-CCceeEEEEcCCC
Q 025107 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDLAD 185 (257)
Q Consensus 107 L~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-~~~fDvIi~D~~~ 185 (257)
|+||||+|..+..++...+..+++++|+++.+++.+++.+.... ..+......+..+..... .++||+|++-..-
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG----NDNFERLRFDVLDLFDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT-------EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC----CcceeEEEeecCChhhcccccccceehhhhhH
Confidence 79999999999999987566899999999999998988876431 122233332222222222 2699999987543
Q ss_pred CCCCCcccCCchHHHHHHHHcCcCCCCcEE
Q 025107 186 PIEGGPCYKLYTKSFYEFVVKPRLNPEGIF 215 (257)
Q Consensus 186 ~~~~~p~~~L~t~ef~~~~~~~~L~pgGil 215 (257)
++. + ...++++. +++.|+|||++
T Consensus 77 ~~l--~----~~~~~l~~-~~~~L~pgG~l 99 (99)
T PF08242_consen 77 HHL--E----DIEAVLRN-IYRLLKPGGIL 99 (99)
T ss_dssp S----S-----HHHHHHH-HTTT-TSS-EE
T ss_pred hhh--h----hHHHHHHH-HHHHcCCCCCC
Confidence 321 1 13588998 79999999986
No 88
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.17 E-value=1.4e-09 Score=96.03 Aligned_cols=133 Identities=14% Similarity=0.132 Sum_probs=92.8
Q ss_pred CCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
++.+|||+|||.|+.+..++... +...|+++|+++..++.+++++...+ -.+++++..|++.+.. ..+.||+|+
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g----~~~v~~~~~D~~~~~~-~~~~fD~Vl 145 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG----VLNVAVTNFDGRVFGA-AVPKFDAIL 145 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC----CCcEEEecCCHHHhhh-hccCCCEEE
Confidence 45789999999999998887753 23589999999999999999987553 2469999999987643 235699999
Q ss_pred EcCCCCCC----CCccc-------CC-----chHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCc
Q 025107 181 GDLADPIE----GGPCY-------KL-----YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKC 244 (257)
Q Consensus 181 ~D~~~~~~----~~p~~-------~L-----~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~ 244 (257)
+|++-... ..|.. .+ ...++++. +.+.|+|||+++..+.+. .++..+.+++.+.+.++.
T Consensus 146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~-a~~~lkpgG~lvYstcs~----~~~Ene~vv~~~l~~~~~ 220 (264)
T TIGR00446 146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDS-AFDALKPGGVLVYSTCSL----EPEENEAVVDYLLEKRPD 220 (264)
T ss_pred EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEeCCC----ChHHHHHHHHHHHHhCCC
Confidence 99873211 11110 00 23567887 789999999998654332 233345555555555543
No 89
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.16 E-value=1.2e-09 Score=102.83 Aligned_cols=136 Identities=16% Similarity=0.125 Sum_probs=93.3
Q ss_pred CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
.++.+|||+|||.|+.+..++... +..+|+++|+++..++.+++++...+ -.+++++.+|+..+-....++||.|
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g----~~~v~~~~~Da~~l~~~~~~~fD~V 311 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK----LSSIEIKIADAERLTEYVQDTFDRI 311 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC----CCeEEEEECchhhhhhhhhccCCEE
Confidence 345789999999999998888753 34699999999999999999987442 2468999999987643335689999
Q ss_pred EEcCCCCCC----CCccc--C--------C--chHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCC
Q 025107 180 IGDLADPIE----GGPCY--K--------L--YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243 (257)
Q Consensus 180 i~D~~~~~~----~~p~~--~--------L--~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~ 243 (257)
++|++-... ..|.. . + ...+.+.. +.+.|+|||+++.-+.+. . ++.....++.+-+.+|
T Consensus 312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~LkpGG~LvYsTCs~---~-~eEne~vv~~fl~~~~ 386 (431)
T PRK14903 312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQ-AWKLLEKGGILLYSTCTV---T-KEENTEVVKRFVYEQK 386 (431)
T ss_pred EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEECCC---C-hhhCHHHHHHHHHhCC
Confidence 999874211 01100 0 0 23567777 689999999998765443 2 3334444444434344
Q ss_pred ce
Q 025107 244 CG 245 (257)
Q Consensus 244 ~v 245 (257)
..
T Consensus 387 ~~ 388 (431)
T PRK14903 387 DA 388 (431)
T ss_pred Cc
Confidence 33
No 90
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.16 E-value=3.4e-10 Score=96.98 Aligned_cols=103 Identities=19% Similarity=0.298 Sum_probs=80.9
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.++++||+||||+|..+..+++..+..+++++|+++.+++.+++.+. ++++++.+|..+.. ..+++||+|+
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--------~~~~~~~~d~~~~~-~~~~~fD~vi 103 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--------ENVQFICGDAEKLP-LEDSSFDLIV 103 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--------CCCeEEecchhhCC-CCCCceeEEE
Confidence 34679999999999999999887555689999999999999988653 37889999987653 2357899999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
++..-++... ...+++. +++.|+|||.+++..
T Consensus 104 ~~~~l~~~~~------~~~~l~~-~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 104 SNLALQWCDD------LSQALSE-LARVLKPGGLLAFST 135 (240)
T ss_pred EhhhhhhccC------HHHHHHH-HHHHcCCCcEEEEEe
Confidence 9865433111 2468888 799999999998764
No 91
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.16 E-value=1.3e-10 Score=99.20 Aligned_cols=102 Identities=25% Similarity=0.332 Sum_probs=75.1
Q ss_pred CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
.+..+||+||+|+|..+..+++. .+..+|++||+++.+++.|++++...+ ..+++++++|+..-... ..+||.|
T Consensus 71 ~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~----~~nv~~~~gdg~~g~~~-~apfD~I 145 (209)
T PF01135_consen 71 KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG----IDNVEVVVGDGSEGWPE-EAPFDRI 145 (209)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT----THSEEEEES-GGGTTGG-G-SEEEE
T ss_pred CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc----cCceeEEEcchhhcccc-CCCcCEE
Confidence 45689999999999999888875 334579999999999999999987542 35899999999876543 4689999
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~ 220 (257)
++...-+. .| .. +.+.|++||++++-.+
T Consensus 146 ~v~~a~~~--ip----------~~-l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 146 IVTAAVPE--IP----------EA-LLEQLKPGGRLVAPIG 173 (209)
T ss_dssp EESSBBSS--------------HH-HHHTEEEEEEEEEEES
T ss_pred EEeeccch--HH----------HH-HHHhcCCCcEEEEEEc
Confidence 99876432 23 22 3457999999998654
No 92
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.15 E-value=1.6e-10 Score=102.43 Aligned_cols=105 Identities=20% Similarity=0.257 Sum_probs=76.0
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.+..+|||||||.|+++..+++..+ .+|++|.++++..+.+++.....+ ...++++...|.+++ +.+||.|+
T Consensus 61 ~~G~~vLDiGcGwG~~~~~~a~~~g-~~v~gitlS~~Q~~~a~~~~~~~g---l~~~v~v~~~D~~~~----~~~fD~Iv 132 (273)
T PF02353_consen 61 KPGDRVLDIGCGWGGLAIYAAERYG-CHVTGITLSEEQAEYARERIREAG---LEDRVEVRLQDYRDL----PGKFDRIV 132 (273)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCST---SSSTEEEEES-GGG-------S-SEEE
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcC-cEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEEeecccc----CCCCCEEE
Confidence 4568999999999999999999765 699999999999999999886443 346899999997664 34999988
Q ss_pred EcC-CCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 181 GDL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 181 ~D~-~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
+-- +.+. ++ -.-..||+. +.+.|+|||+++++.
T Consensus 133 Si~~~Ehv--g~---~~~~~~f~~-~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 133 SIEMFEHV--GR---KNYPAFFRK-ISRLLKPGGRLVLQT 166 (273)
T ss_dssp EESEGGGT--CG---GGHHHHHHH-HHHHSETTEEEEEEE
T ss_pred EEechhhc--Ch---hHHHHHHHH-HHHhcCCCcEEEEEe
Confidence 753 2222 11 123688999 799999999999875
No 93
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=2.8e-10 Score=101.22 Aligned_cols=131 Identities=18% Similarity=0.165 Sum_probs=92.7
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.++++|||+|||+|.++..+++. +..+|.++|+||..++.|++++.+|+. .+.++.-..+..... ..++||+|+
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~aa~eNa~~N~v---~~~~~~~~~~~~~~~--~~~~~DvIV 234 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEAARENARLNGV---ELLVQAKGFLLLEVP--ENGPFDVIV 234 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHHHHHHHHHHcCC---chhhhcccccchhhc--ccCcccEEE
Confidence 47899999999999999999997 568999999999999999999988752 112222222222222 236899999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHH-hhhCCceEEEeecCc
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTL-RQVFKCGCCALFSSY 253 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l-~~~F~~v~~~~~~~~ 253 (257)
.+.-. .| -..+... +++.|+|||.+++.. ... +....+.+.+ ++-|..+....-+-|
T Consensus 235 ANILA----~v-----l~~La~~-~~~~lkpgg~lIlSG-----Il~-~q~~~V~~a~~~~gf~v~~~~~~~eW 292 (300)
T COG2264 235 ANILA----EV-----LVELAPD-IKRLLKPGGRLILSG-----ILE-DQAESVAEAYEQAGFEVVEVLEREEW 292 (300)
T ss_pred ehhhH----HH-----HHHHHHH-HHHHcCCCceEEEEe-----ehH-hHHHHHHHHHHhCCCeEeEEEecCCE
Confidence 98642 22 1355667 688999999999854 222 2355666777 456877777665555
No 94
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.15 E-value=2.2e-10 Score=101.03 Aligned_cols=105 Identities=20% Similarity=0.261 Sum_probs=79.2
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.+..+||+||||+|..+..+++..+ .+|+++|+++.+++.|++.+.. .++++++.+|+.+. ...+++||+|+
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~-~~v~giD~s~~~~~~a~~~~~~------~~~i~~~~~D~~~~-~~~~~~FD~V~ 122 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYG-AHVHGVDICEKMVNIAKLRNSD------KNKIEFEANDILKK-DFPENTFDMIY 122 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcC-CEEEEEECCHHHHHHHHHHcCc------CCceEEEECCcccC-CCCCCCeEEEE
Confidence 4567999999999999998877543 5999999999999999987642 35899999997642 12346899999
Q ss_pred Ec-CCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 181 GD-LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 181 ~D-~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
+. ...+. .. --...+++. +++.|||||.+++..
T Consensus 123 s~~~l~h~--~~---~d~~~~l~~-i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 123 SRDAILHL--SY---ADKKKLFEK-CYKWLKPNGILLITD 156 (263)
T ss_pred EhhhHHhC--CH---HHHHHHHHH-HHHHcCCCcEEEEEE
Confidence 84 33221 10 013578888 799999999998754
No 95
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.15 E-value=1.2e-09 Score=103.28 Aligned_cols=115 Identities=23% Similarity=0.170 Sum_probs=85.2
Q ss_pred CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
.+..+|||+|||+|+.+..++++. +..+|+++|+++..++.+++++...+ -.+++++.+|+.++.....++||+|
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g----~~~v~~~~~D~~~~~~~~~~~fD~V 324 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG----LTNIETKALDARKVHEKFAEKFDKI 324 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEeCCcccccchhcccCCEE
Confidence 345789999999999999888753 34699999999999999999987542 2359999999988653333689999
Q ss_pred EEcCCCCCC----CCcccC-------C-----chHHHHHHHHcCcCCCCcEEEEecC
Q 025107 180 IGDLADPIE----GGPCYK-------L-----YTKSFYEFVVKPRLNPEGIFVTQAG 220 (257)
Q Consensus 180 i~D~~~~~~----~~p~~~-------L-----~t~ef~~~~~~~~L~pgGil~~~~~ 220 (257)
++|++-... ..|... + ...++++. +.+.|+|||.++..+.
T Consensus 325 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~-a~~~LkpGG~lvystc 380 (444)
T PRK14902 325 LVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILES-VAQYLKKGGILVYSTC 380 (444)
T ss_pred EEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHH-HHHHcCCCCEEEEEcC
Confidence 999873210 011100 0 12467888 7899999999986543
No 96
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.15 E-value=3.9e-10 Score=99.54 Aligned_cols=106 Identities=20% Similarity=0.250 Sum_probs=79.6
Q ss_pred CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
.+.++||+||||+|..+..+++.. ...+|+++|+++.+++.|+++....+ -++++++.+|+.+. ...++.||+|
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g----~~~v~~~~~d~~~l-~~~~~~fD~V 150 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG----YTNVEFRLGEIEAL-PVADNSVDVI 150 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC----CCCEEEEEcchhhC-CCCCCceeEE
Confidence 456899999999999877766642 33589999999999999999875432 25889999997653 3334689999
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
+++..-.. .+ -....+++ +.++|+|||.+++.
T Consensus 151 i~~~v~~~--~~----d~~~~l~~-~~r~LkpGG~l~i~ 182 (272)
T PRK11873 151 ISNCVINL--SP----DKERVFKE-AFRVLKPGGRFAIS 182 (272)
T ss_pred EEcCcccC--CC----CHHHHHHH-HHHHcCCCcEEEEE
Confidence 98864222 11 12467888 79999999999874
No 97
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.14 E-value=5.6e-10 Score=97.39 Aligned_cols=99 Identities=13% Similarity=0.142 Sum_probs=76.5
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~ 181 (257)
++.+|||||||+|.++..+.+. + .+++++|+++.+++.+++... ...++.+|+... ...+++||+|++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~-~-~~v~~~D~s~~~l~~a~~~~~---------~~~~~~~d~~~~-~~~~~~fD~V~s 109 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER-G-SQVTALDLSPPMLAQARQKDA---------ADHYLAGDIESL-PLATATFDLAWS 109 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc-C-CeEEEEECCHHHHHHHHhhCC---------CCCEEEcCcccC-cCCCCcEEEEEE
Confidence 4679999999999999888774 3 699999999999999998642 236788887653 234568999999
Q ss_pred cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
+..-.+... ..+++.+ +.+.|+|||.+++..
T Consensus 110 ~~~l~~~~d------~~~~l~~-~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 110 NLAVQWCGN------LSTALRE-LYRVVRPGGVVAFTT 140 (251)
T ss_pred CchhhhcCC------HHHHHHH-HHHHcCCCeEEEEEe
Confidence 875443211 2577888 799999999998764
No 98
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.13 E-value=1.7e-09 Score=102.24 Aligned_cols=115 Identities=17% Similarity=0.135 Sum_probs=84.8
Q ss_pred CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
.++++|||+|||+|+.+..++++. +..+|+++|+++..++.+++++...+ -.+++++.+|+..+. ..++||+|
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g----~~~v~~~~~Da~~~~--~~~~fD~V 322 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG----ITIIETIEGDARSFS--PEEQPDAI 322 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC----CCeEEEEeCcccccc--cCCCCCEE
Confidence 345799999999999888777642 33589999999999999999987542 247999999998875 34679999
Q ss_pred EEcCCCCCC----CCcc--cCC----------chHHHHHHHHcCcCCCCcEEEEecCCC
Q 025107 180 IGDLADPIE----GGPC--YKL----------YTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (257)
Q Consensus 180 i~D~~~~~~----~~p~--~~L----------~t~ef~~~~~~~~L~pgGil~~~~~~~ 222 (257)
++|++-... ..|. +.+ ...+++.. +.+.|+|||+++..+.+.
T Consensus 323 l~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~-a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 323 LLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDH-AASLLKPGGVLVYATCSI 380 (445)
T ss_pred EEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEeCCC
Confidence 999873211 0111 011 12357888 789999999999876543
No 99
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.11 E-value=7.1e-10 Score=92.76 Aligned_cols=128 Identities=20% Similarity=0.227 Sum_probs=85.8
Q ss_pred CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH-----Hh--cC
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-----LE--SR 172 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~-----l~--~~ 172 (257)
++.++||+||||+|.++..+++.. +..+|+++|+++.. . .++++++.+|..+. +. ..
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~-------~~~i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P-------IENVDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c-------CCCceEEEeeCCChhHHHHHHHHhC
Confidence 466899999999999998887753 44689999999854 1 14577888886542 11 12
Q ss_pred CCceeEEEEcCCCCCCCCcc-cCCc----hHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEE
Q 025107 173 KESYDVIIGDLADPIEGGPC-YKLY----TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCC 247 (257)
Q Consensus 173 ~~~fDvIi~D~~~~~~~~p~-~~L~----t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~ 247 (257)
.++||+|++|...+....+. .++. ...+++. +.+.|+|||.+++.... ...+..++..++..|..+..
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~lvi~~~~------~~~~~~~l~~l~~~~~~~~~ 168 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDI-AKEVLKPKGNFVVKVFQ------GEEIDEYLNELRKLFEKVKV 168 (188)
T ss_pred CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHH-HHHHccCCCEEEEEEcc------CccHHHHHHHHHhhhceEEE
Confidence 46799999986422110110 0111 2467888 79999999999986421 23355777888888877766
Q ss_pred Eee
Q 025107 248 ALF 250 (257)
Q Consensus 248 ~~~ 250 (257)
+..
T Consensus 169 ~~~ 171 (188)
T TIGR00438 169 TKP 171 (188)
T ss_pred eCC
Confidence 554
No 100
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.11 E-value=1.8e-10 Score=102.87 Aligned_cols=130 Identities=18% Similarity=0.209 Sum_probs=88.8
Q ss_pred CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025107 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
..+.++|||+|||+|.++..+++. +..+|+++|+||..++.|+++..+|+ -..++++. ...+. ..++||+|
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~~~N~---~~~~~~v~--~~~~~---~~~~~dlv 229 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENAELNG---VEDRIEVS--LSEDL---VEGKFDLV 229 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHHHHTT----TTCEEES--CTSCT---CCS-EEEE
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHHcC---CCeeEEEE--Eeccc---ccccCCEE
Confidence 345689999999999999999996 67899999999999999999998875 23466553 11111 23899999
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeecCcc
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSYS 254 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~~~ 254 (257)
+.+.... + | .+.... +.+.|+|||.+++-. ... .....+.+.+++-|..+..-....|.
T Consensus 230 vANI~~~----v---L--~~l~~~-~~~~l~~~G~lIlSG-----Il~-~~~~~v~~a~~~g~~~~~~~~~~~W~ 288 (295)
T PF06325_consen 230 VANILAD----V---L--LELAPD-IASLLKPGGYLILSG-----ILE-EQEDEVIEAYKQGFELVEEREEGEWV 288 (295)
T ss_dssp EEES-HH----H---H--HHHHHH-CHHHEEEEEEEEEEE-----EEG-GGHHHHHHHHHTTEEEEEEEEETTEE
T ss_pred EECCCHH----H---H--HHHHHH-HHHhhCCCCEEEEcc-----ccH-HHHHHHHHHHHCCCEEEEEEEECCEE
Confidence 9986521 1 1 345566 688999999999853 222 22346666666655555555555553
No 101
>PRK14968 putative methyltransferase; Provisional
Probab=99.11 E-value=2.1e-09 Score=88.98 Aligned_cols=112 Identities=21% Similarity=0.237 Sum_probs=81.8
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.+.++||++|||+|.++..+++. + .+++++|+++++++.+++++...+ ..+.++.++..|..+.+. .++||+|+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~-~-~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~~d~~~~~~--~~~~d~vi 95 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN-G-KKVVGVDINPYAVECAKCNAKLNN--IRNNGVEVIRSDLFEPFR--GDKFDVIL 95 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh-c-ceEEEEECCHHHHHHHHHHHHHcC--CCCcceEEEecccccccc--ccCceEEE
Confidence 45678999999999999999986 3 699999999999999999876542 122238899999876543 34899999
Q ss_pred EcCCCCCCCCcc----------------cCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025107 181 GDLADPIEGGPC----------------YKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (257)
Q Consensus 181 ~D~~~~~~~~p~----------------~~L~t~ef~~~~~~~~L~pgGil~~~~~ 220 (257)
++++-... .+. .......+++. +.+.|+|||.+++...
T Consensus 96 ~n~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 96 FNPPYLPT-EEEEEWDDWLNYALSGGKDGREVIDRFLDE-VGRYLKPGGRILLLQS 149 (188)
T ss_pred ECCCcCCC-CchhhhhhhhhhhhccCcChHHHHHHHHHH-HHHhcCCCeEEEEEEc
Confidence 98752110 000 00112467888 7899999998877653
No 102
>PHA03411 putative methyltransferase; Provisional
Probab=99.10 E-value=8.9e-10 Score=97.02 Aligned_cols=105 Identities=19% Similarity=0.161 Sum_probs=78.1
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~ 181 (257)
...+|||+|||+|.++..++++.+..+|++||+++.+++.+++.+ ++++++.+|++++.. .++||+|++
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---------~~v~~v~~D~~e~~~--~~kFDlIIs 132 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---------PEAEWITSDVFEFES--NEKFDVVIS 132 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---------cCCEEEECchhhhcc--cCCCcEEEE
Confidence 357899999999999988877643469999999999999999853 468899999998863 368999999
Q ss_pred cCCCCCC-C--CcccCCc-----------hHHHHHHHHcCcCCCCcEEEEe
Q 025107 182 DLADPIE-G--GPCYKLY-----------TKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 182 D~~~~~~-~--~p~~~L~-----------t~ef~~~~~~~~L~pgGil~~~ 218 (257)
+++-... . .....-+ -..++.. +...|+|+|.+.+-
T Consensus 133 NPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~-v~~~L~p~G~~~~~ 182 (279)
T PHA03411 133 NPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFAD-VGYFIVPTGSAGFA 182 (279)
T ss_pred cCCccccCchhhhhhhhhccCccccccccHHHHHhh-hHheecCCceEEEE
Confidence 9873211 0 0000111 2467787 78999999966543
No 103
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.09 E-value=7.9e-10 Score=100.51 Aligned_cols=111 Identities=21% Similarity=0.061 Sum_probs=83.0
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.+.++|||+|||+|+++.+++.. + .+++++|+|+.+++.+++++...+ .+.++++.+|+.+. ....+.||+|+
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~-~-~~v~g~Di~~~~~~~a~~nl~~~g----~~~i~~~~~D~~~l-~~~~~~~D~Iv 253 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLM-G-AKVIGCDIDWKMVAGARINLEHYG----IEDFFVKRGDATKL-PLSSESVDAIA 253 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHh-C-CeEEEEcCCHHHHHHHHHHHHHhC----CCCCeEEecchhcC-CcccCCCCEEE
Confidence 45678999999999999887764 3 689999999999999999886542 23488999998874 33357899999
Q ss_pred EcCCCCCCCCcccCC---chHHHHHHHHcCcCCCCcEEEEec
Q 025107 181 GDLADPIEGGPCYKL---YTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L---~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
+|+|-........+. ...++++. +++.|+|||.+++..
T Consensus 254 ~dPPyg~~~~~~~~~~~~l~~~~l~~-~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 254 TDPPYGRSTTAAGDGLESLYERSLEE-FHEVLKSEGWIVYAV 294 (329)
T ss_pred ECCCCcCcccccCCchHHHHHHHHHH-HHHHccCCcEEEEEE
Confidence 998732211111111 13678888 799999999988765
No 104
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.09 E-value=3.3e-09 Score=99.75 Aligned_cols=114 Identities=21% Similarity=0.271 Sum_probs=83.7
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCceeEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI 179 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fDvI 179 (257)
.++.+|||+|||+|+.+..+++..+..+|+++|+++..++.+++++...+ .+++++.+|+.+.... ..++||.|
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g-----~~~~~~~~D~~~~~~~~~~~~fD~V 317 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLG-----LKATVIVGDARDPAQWWDGQPFDRI 317 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEcCcccchhhcccCCCCEE
Confidence 35679999999999999998886433699999999999999999987542 2468999999764322 24679999
Q ss_pred EEcCCCCCC----CCcccC-C-----------chHHHHHHHHcCcCCCCcEEEEecC
Q 025107 180 IGDLADPIE----GGPCYK-L-----------YTKSFYEFVVKPRLNPEGIFVTQAG 220 (257)
Q Consensus 180 i~D~~~~~~----~~p~~~-L-----------~t~ef~~~~~~~~L~pgGil~~~~~ 220 (257)
++|++-... ..|... . ...++++. +.+.|+|||.++..+.
T Consensus 318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~-a~~~LkpGG~lvystc 373 (427)
T PRK10901 318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDA-LWPLLKPGGTLLYATC 373 (427)
T ss_pred EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEeC
Confidence 999973210 011100 0 12367888 7899999999987654
No 105
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.09 E-value=4.1e-09 Score=99.32 Aligned_cols=114 Identities=16% Similarity=0.135 Sum_probs=84.5
Q ss_pred CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---CCCce
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESY 176 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~---~~~~f 176 (257)
.+..+|||+|||.|+.+..+++.. +..+|+++|+++..++.+++++...+ -.+++++.+|+.++... ..++|
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g----~~~v~~~~~D~~~~~~~~~~~~~~f 326 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG----LKSIKILAADSRNLLELKPQWRGYF 326 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC----CCeEEEEeCChhhcccccccccccC
Confidence 345899999999999998888752 33589999999999999999987543 24699999999876431 24689
Q ss_pred eEEEEcCCCCCC----CCcccC--C----------chHHHHHHHHcCcCCCCcEEEEec
Q 025107 177 DVIIGDLADPIE----GGPCYK--L----------YTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 177 DvIi~D~~~~~~----~~p~~~--L----------~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
|.|++|++-... ..|... . ...+++.. +.+.|||||.++..+
T Consensus 327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~lkpgG~lvyst 384 (434)
T PRK14901 327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLES-LAPLLKPGGTLVYAT 384 (434)
T ss_pred CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEe
Confidence 999999873211 112100 0 03577888 789999999998654
No 106
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.08 E-value=6.2e-10 Score=93.06 Aligned_cols=131 Identities=14% Similarity=0.160 Sum_probs=90.0
Q ss_pred CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025107 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
.+.-.++|++|||.|.++..|+.+. .+++++|+++..++.||+...- .++|+++..|..++. +.++||+|
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~------~~~V~~~~~dvp~~~--P~~~FDLI 110 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAG------LPHVEWIQADVPEFW--PEGRFDLI 110 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-------SSEEEEES-TTT-----SS-EEEE
T ss_pred ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCC------CCCeEEEECcCCCCC--CCCCeeEE
Confidence 4555899999999999999999875 5999999999999999998752 378999999987763 46899999
Q ss_pred EEcCCCCCCCCcccCCch----HHHHHHHHcCcCCCCcEEEEec----CCCCCCCChHHHHHHHHHHhhhCCceEEEe
Q 025107 180 IGDLADPIEGGPCYKLYT----KSFYEFVVKPRLNPEGIFVTQA----GPAGIFSHTEVFSCIYNTLRQVFKCGCCAL 249 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t----~ef~~~~~~~~L~pgGil~~~~----~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~ 249 (257)
++.-.- .+|.. ..+.+. +.+.|+|||.+++-. .+.. |.+....+.+...|.+.+-+|.-..
T Consensus 111 V~SEVl-------YYL~~~~~L~~~l~~-l~~~L~pgG~LV~g~~rd~~c~~-wgh~~ga~tv~~~~~~~~~~~~~~~ 179 (201)
T PF05401_consen 111 VLSEVL-------YYLDDAEDLRAALDR-LVAALAPGGHLVFGHARDANCRR-WGHAAGAETVLEMLQEHLTEVERVE 179 (201)
T ss_dssp EEES-G-------GGSSSHHHHHHHHHH-HHHTEEEEEEEEEEEE-HHHHHH-TT-S--HHHHHHHHHHHSEEEEEEE
T ss_pred EEehHh-------HcCCCHHHHHHHHHH-HHHHhCCCCEEEEEEecCCcccc-cCcccchHHHHHHHHHHhhheeEEE
Confidence 987321 12222 236676 689999999998732 0111 4445567788888988887776543
No 107
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.08 E-value=8.2e-10 Score=93.13 Aligned_cols=102 Identities=15% Similarity=0.115 Sum_probs=74.1
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~ 181 (257)
++.+||++|||+|..+..+++. + .+|+++|+++.+++.+++.....+ -++++...|...+ ..+++||+|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~-g-~~V~~iD~s~~~l~~a~~~~~~~~-----~~v~~~~~d~~~~--~~~~~fD~I~~ 100 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA-G-YDVRAWDHNPASIASVLDMKAREN-----LPLRTDAYDINAA--ALNEDYDFIFS 100 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC-C-CeEEEEECCHHHHHHHHHHHHHhC-----CCceeEeccchhc--cccCCCCEEEE
Confidence 4689999999999999999985 3 589999999999999998765332 1367777776432 12367999998
Q ss_pred cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025107 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (257)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~ 217 (257)
...-... .+ -...++++. +++.|+|||++++
T Consensus 101 ~~~~~~~-~~---~~~~~~l~~-~~~~LkpgG~lli 131 (195)
T TIGR00477 101 TVVFMFL-QA---GRVPEIIAN-MQAHTRPGGYNLI 131 (195)
T ss_pred ecccccC-CH---HHHHHHHHH-HHHHhCCCcEEEE
Confidence 6542210 11 123578888 7999999997443
No 108
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.07 E-value=1.1e-09 Score=99.76 Aligned_cols=134 Identities=13% Similarity=0.017 Sum_probs=91.3
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~ 181 (257)
...+|||||||+|..+..+++..+..+++++|+++.+++.|++..+ .++++++.+|+.+. ....+.||+|++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-------~~~i~~i~gD~e~l-p~~~~sFDvVIs 184 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIIEGDAEDL-PFPTDYADRYVS 184 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-------ccCCeEEeccHHhC-CCCCCceeEEEE
Confidence 4579999999999999888876444699999999999999998753 24688999998763 333578999998
Q ss_pred cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec-CCCCCCCC---------hHHHHHHHHHHhhh-CCceEEEee
Q 025107 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA-GPAGIFSH---------TEVFSCIYNTLRQV-FKCGCCALF 250 (257)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~-~~~~~~~~---------~~~~~~~~~~l~~~-F~~v~~~~~ 250 (257)
...-.. .+. ....+++ +++.|+|||.+++-. ..+..+.. .....++.+.|++. |..+..-..
T Consensus 185 ~~~L~~--~~d----~~~~L~e-~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i 257 (340)
T PLN02490 185 AGSIEY--WPD----PQRGIKE-AYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRI 257 (340)
T ss_pred cChhhh--CCC----HHHHHHH-HHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEc
Confidence 643221 111 2357888 799999999987632 11211100 01234566667766 776665443
No 109
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.07 E-value=2e-09 Score=102.28 Aligned_cols=105 Identities=15% Similarity=0.172 Sum_probs=79.7
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.++.+|||||||+|..+..+++..+ .+|+++|+++.+++.|+++... ...+++++.+|+.+.. -..++||+|+
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvDiS~~~l~~A~~~~~~-----~~~~v~~~~~d~~~~~-~~~~~fD~I~ 337 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFD-VHVVGIDLSVNMISFALERAIG-----RKCSVEFEVADCTKKT-YPDNSFDVIY 337 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhhc-----CCCceEEEEcCcccCC-CCCCCEEEEE
Confidence 3467999999999999998888654 5899999999999999987542 2358999999976532 2346899999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
+...-.+... ...+++. +++.|+|||.+++..
T Consensus 338 s~~~l~h~~d------~~~~l~~-~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 338 SRDTILHIQD------KPALFRS-FFKWLKPGGKVLISD 369 (475)
T ss_pred ECCcccccCC------HHHHHHH-HHHHcCCCeEEEEEE
Confidence 8643211101 2478888 799999999998753
No 110
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.07 E-value=1.5e-09 Score=93.13 Aligned_cols=107 Identities=19% Similarity=0.146 Sum_probs=81.3
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
.+..+||+||||+|..+..+++..+ ..+++++|+++.+++.+++++.... ..++++++.+|+.+.. ...+.||+|
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~-~~~~~~D~I 125 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG---LSGNVEFVQGDAEALP-FPDNSFDAV 125 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc---cccCeEEEecccccCC-CCCCCccEE
Confidence 3457999999999999999888643 4799999999999999999875421 2467899999987643 334689999
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
++...-.. .+ -...+++. +.+.|+|||.+++.
T Consensus 126 ~~~~~l~~--~~----~~~~~l~~-~~~~L~~gG~li~~ 157 (239)
T PRK00216 126 TIAFGLRN--VP----DIDKALRE-MYRVLKPGGRLVIL 157 (239)
T ss_pred EEeccccc--CC----CHHHHHHH-HHHhccCCcEEEEE
Confidence 87643222 11 13577888 79999999988753
No 111
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.06 E-value=9.4e-10 Score=97.14 Aligned_cols=105 Identities=20% Similarity=0.293 Sum_probs=84.0
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.++++|||||||.|+++..++++.+ .+|++|.++++..+.+++.+...+ ...+++++..|-+++ .++||.|+
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y~-v~V~GvTlS~~Q~~~~~~r~~~~g---l~~~v~v~l~d~rd~----~e~fDrIv 142 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEYG-VTVVGVTLSEEQLAYAEKRIAARG---LEDNVEVRLQDYRDF----EEPFDRIV 142 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHcC-CEEEEeeCCHHHHHHHHHHHHHcC---CCcccEEEecccccc----ccccceee
Confidence 4578999999999999999999875 699999999999999999876442 235899999996655 45699988
Q ss_pred Ec-CCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 181 GD-LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 181 ~D-~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
+- .+.+. ++ -.-..||+. +++.|+|||.+++++
T Consensus 143 SvgmfEhv--g~---~~~~~ff~~-~~~~L~~~G~~llh~ 176 (283)
T COG2230 143 SVGMFEHV--GK---ENYDDFFKK-VYALLKPGGRMLLHS 176 (283)
T ss_pred ehhhHHHh--Cc---ccHHHHHHH-HHhhcCCCceEEEEE
Confidence 75 34433 22 123689999 799999999999886
No 112
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.06 E-value=1.7e-09 Score=78.91 Aligned_cols=103 Identities=23% Similarity=0.265 Sum_probs=79.3
Q ss_pred eEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCC
Q 025107 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA 184 (257)
Q Consensus 105 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~ 184 (257)
++|++|||.|..+..+++. ...+++++|+++..++.+++..... ...+++++..|..++......+||+|+++.+
T Consensus 1 ~ildig~G~G~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALASG-PGARVTGVDISPVALELARKAAAAL----LADNVEVLKGDAEELPPEADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHhcc----cccceEEEEcChhhhccccCCceEEEEEccc
Confidence 5899999999999999883 4579999999999999998532222 3468899999999886534578999999876
Q ss_pred CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 185 DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 185 ~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
.... .-....+++. +.+.|+|+|.+++.
T Consensus 76 ~~~~-----~~~~~~~l~~-~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHL-----VEDLARFLEE-ARRLLKPGGVLVLT 103 (107)
T ss_pred eeeh-----hhHHHHHHHH-HHHHcCCCCEEEEE
Confidence 3210 1134577787 68899999998863
No 113
>PHA03412 putative methyltransferase; Provisional
Probab=99.06 E-value=1.1e-09 Score=94.33 Aligned_cols=103 Identities=10% Similarity=0.095 Sum_probs=73.5
Q ss_pred CCCeEEEEeccchHHHHHHHhc---CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025107 102 NPKTIFIMGGGEGSTAREILRH---KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~---~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv 178 (257)
.+.+|||+|||+|.++..+++. .+..+|++||||+.+++.|+++. ++++++.+|+..+. ..++||+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~---------~~~~~~~~D~~~~~--~~~~FDl 117 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV---------PEATWINADALTTE--FDTLFDM 117 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc---------cCCEEEEcchhccc--ccCCccE
Confidence 4679999999999999988764 12458999999999999999763 35789999987643 2468999
Q ss_pred EEEcCCCCCCCCc------ccCCchHHHHHHHHcCcCCCCcEEEE
Q 025107 179 IIGDLADPIEGGP------CYKLYTKSFYEFVVKPRLNPEGIFVT 217 (257)
Q Consensus 179 Ii~D~~~~~~~~p------~~~L~t~ef~~~~~~~~L~pgGil~~ 217 (257)
||++||-...... ...+....+++. +.+.+++|+. ++
T Consensus 118 IIsNPPY~~~~~~d~~ar~~g~~~~~~li~~-A~~Ll~~G~~-IL 160 (241)
T PHA03412 118 AISNPPFGKIKTSDFKGKYTGAEFEYKVIER-ASQIARQGTF-II 160 (241)
T ss_pred EEECCCCCCccccccCCcccccHHHHHHHHH-HHHHcCCCEE-Ee
Confidence 9999973211000 012445567787 5765555554 44
No 114
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.05 E-value=1.4e-09 Score=92.64 Aligned_cols=100 Identities=17% Similarity=0.159 Sum_probs=76.4
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.+..+||++|||+|..+..+++.. .+|+++|+++.+++.+++++...+ -.+++++.+|+.+.+. ..++||+|+
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~-~~~~fD~I~ 149 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLG----LHNVSVRHGDGWKGWP-AYAPFDRIL 149 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCC----CCceEEEECCcccCCC-cCCCcCEEE
Confidence 456899999999999998777653 489999999999999999887442 2469999999865432 236899999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~ 220 (257)
++...+. + .+. +.+.|+|||++++..+
T Consensus 150 ~~~~~~~-------~-----~~~-l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 150 VTAAAPE-------I-----PRA-LLEQLKEGGILVAPVG 176 (212)
T ss_pred EccCchh-------h-----hHH-HHHhcCCCcEEEEEEc
Confidence 9864221 1 234 5678999999998654
No 115
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.05 E-value=2e-09 Score=91.34 Aligned_cols=104 Identities=19% Similarity=0.162 Sum_probs=80.4
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCC-cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~-~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
.++.+||++|||.|..+..+++..+. .+++++|+++.+++.+++++. ..++++++.+|+.+.. ...++||+|
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~------~~~~i~~~~~d~~~~~-~~~~~~D~i 110 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE------LPLNIEFIQADAEALP-FEDNSFDAV 110 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc------cCCCceEEecchhcCC-CCCCcEEEE
Confidence 46789999999999999998886443 589999999999999998875 1357899999987754 234689999
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
++...... .+ ....+++. +++.|+|||.+++.
T Consensus 111 ~~~~~~~~--~~----~~~~~l~~-~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 111 TIAFGLRN--VT----DIQKALRE-MYRVLKPGGRLVIL 142 (223)
T ss_pred EEeeeeCC--cc----cHHHHHHH-HHHHcCCCcEEEEE
Confidence 88643221 11 13477888 79999999988864
No 116
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.05 E-value=2.4e-09 Score=88.07 Aligned_cols=101 Identities=16% Similarity=0.228 Sum_probs=75.9
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~ 181 (257)
...+||+||||.|.++.++++. ..++++||+|+.+++.+++++.. .++++++.+|+.++.. ...+||.|+.
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~------~~~v~ii~~D~~~~~~-~~~~~d~vi~ 83 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA------ADNLTVIHGDALKFDL-PKLQPYKVVG 83 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc------CCCEEEEECchhcCCc-cccCCCEEEE
Confidence 4568999999999999999986 36999999999999999988742 3589999999988742 2246999999
Q ss_pred cCCCCCCCCcccCCchHHHHHHHHcC-cCCCCcEEEEecC
Q 025107 182 DLADPIEGGPCYKLYTKSFYEFVVKP-RLNPEGIFVTQAG 220 (257)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~-~L~pgGil~~~~~ 220 (257)
+++-. . +.+.+..++.. .+.++|+++++..
T Consensus 84 n~Py~--------~-~~~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 84 NLPYN--------I-STPILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred CCCcc--------c-HHHHHHHHHhcCCCcceEEEEEEHH
Confidence 87532 1 22333432332 3458899998853
No 117
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.05 E-value=2.1e-09 Score=97.48 Aligned_cols=105 Identities=16% Similarity=0.136 Sum_probs=76.0
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.++++|||||||+|..+..++... ..+|+++|+++.++..++..-.... .+++++++..|+.+. .. .++||+|+
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g-~~~V~GiD~S~~~l~q~~a~~~~~~---~~~~i~~~~~d~e~l-p~-~~~FD~V~ 194 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAG-AKLVVGIDPSQLFLCQFEAVRKLLG---NDQRAHLLPLGIEQL-PA-LKAFDTVF 194 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHhcC---CCCCeEEEeCCHHHC-CC-cCCcCEEE
Confidence 356899999999999999998864 4579999999998865443211111 246899999998664 22 57899999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
+-..-..... -..+++. +++.|+|||.+++.
T Consensus 195 s~~vl~H~~d------p~~~L~~-l~~~LkpGG~lvl~ 225 (322)
T PRK15068 195 SMGVLYHRRS------PLDHLKQ-LKDQLVPGGELVLE 225 (322)
T ss_pred ECChhhccCC------HHHHHHH-HHHhcCCCcEEEEE
Confidence 8532111111 2467888 79999999999875
No 118
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.05 E-value=2.7e-09 Score=96.43 Aligned_cols=105 Identities=12% Similarity=0.183 Sum_probs=81.9
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~ 181 (257)
++.+|||+|||+|.++..+++. . .+|+++|+++.+++.|++++..++ -++++++.+|+.++.....++||+|++
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~-~-~~V~gvD~s~~av~~A~~n~~~~~----l~~v~~~~~D~~~~~~~~~~~~D~Vv~ 246 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP-G-MQLTGIEISAEAIACAKQSAAELG----LTNVQFQALDSTQFATAQGEVPDLVLV 246 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc-C-CEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEEcCHHHHHHhcCCCCeEEEE
Confidence 4689999999999999999984 3 699999999999999999987653 257999999999987644467999999
Q ss_pred cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCC
Q 025107 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (257)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~ 222 (257)
|++.. + ...+..+. + ..++|++++.+-+++.
T Consensus 247 dPPr~---G-----~~~~~~~~-l-~~~~~~~ivyvsc~p~ 277 (315)
T PRK03522 247 NPPRR---G-----IGKELCDY-L-SQMAPRFILYSSCNAQ 277 (315)
T ss_pred CCCCC---C-----ccHHHHHH-H-HHcCCCeEEEEECCcc
Confidence 98732 1 12344444 3 3478888888877654
No 119
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.04 E-value=4.2e-09 Score=90.80 Aligned_cols=112 Identities=19% Similarity=0.203 Sum_probs=94.7
Q ss_pred CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC--CCceeEEE
Q 025107 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDVII 180 (257)
Q Consensus 103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~--~~~fDvIi 180 (257)
..-+|+||||.|....++++..|...+.+||+...++..|.+.....+ -+++.++..||.+.+... +++.|-|.
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~----l~Nlri~~~DA~~~l~~~~~~~sl~~I~ 124 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG----LKNLRLLCGDAVEVLDYLIPDGSLDKIY 124 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC----CCcEEEEcCCHHHHHHhcCCCCCeeEEE
Confidence 357999999999999999987677899999999999999988876442 249999999999999764 34899999
Q ss_pred EcCCCCCCCCcc--cCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 181 GDLADPIEGGPC--YKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 181 ~D~~~~~~~~p~--~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
+.-+|||-.... ..|.+.+|++. +++.|+|||.+-+.+
T Consensus 125 i~FPDPWpKkRH~KRRl~~~~fl~~-~a~~Lk~gG~l~~aT 164 (227)
T COG0220 125 INFPDPWPKKRHHKRRLTQPEFLKL-YARKLKPGGVLHFAT 164 (227)
T ss_pred EECCCCCCCccccccccCCHHHHHH-HHHHccCCCEEEEEe
Confidence 999999953222 47899999999 799999999998865
No 120
>PTZ00146 fibrillarin; Provisional
Probab=99.04 E-value=5.2e-09 Score=93.06 Aligned_cols=138 Identities=17% Similarity=0.164 Sum_probs=89.6
Q ss_pred CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH--hcCCCcee
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL--ESRKESYD 177 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l--~~~~~~fD 177 (257)
.+..+||+||||+|.++..++..- +..+|++||+++++.+...+... ..+++..+.+|++.-. +...+.+|
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak------~r~NI~~I~~Da~~p~~y~~~~~~vD 204 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK------KRPNIVPIIEDARYPQKYRMLVPMVD 204 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh------hcCCCEEEECCccChhhhhcccCCCC
Confidence 345799999999999999999863 23589999999876543333221 1257889999986431 22235799
Q ss_pred EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCC---ChHHHHHHHHHHhhh-CCceEEEeecCc
Q 025107 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFS---HTEVFSCIYNTLRQV-FKCGCCALFSSY 253 (257)
Q Consensus 178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~---~~~~~~~~~~~l~~~-F~~v~~~~~~~~ 253 (257)
+|++|...++ . ...+... +++.|||||.+++......... ....+.+-.+.|++. |..+.....+++
T Consensus 205 vV~~Dva~pd--q------~~il~~n-a~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py 275 (293)
T PTZ00146 205 VIFADVAQPD--Q------ARIVALN-AQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPF 275 (293)
T ss_pred EEEEeCCCcc--h------HHHHHHH-HHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEecCCc
Confidence 9999986432 1 1234445 6889999999887432111111 123344445778876 887666655443
No 121
>PRK08317 hypothetical protein; Provisional
Probab=99.03 E-value=2.6e-09 Score=91.32 Aligned_cols=106 Identities=23% Similarity=0.238 Sum_probs=80.0
Q ss_pred CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
.++.+||++|||+|..+..++++. +..+++++|+++..++.+++.... ..++++++..|+...- ...++||+|
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-----~~~~~~~~~~d~~~~~-~~~~~~D~v 91 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-----LGPNVEFVRGDADGLP-FPDGSFDAV 91 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-----CCCceEEEecccccCC-CCCCCceEE
Confidence 456899999999999999988764 456999999999999999987322 2367899999976532 234789999
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
++...-..... ...+++. ++++|+|||.+++..
T Consensus 92 ~~~~~~~~~~~------~~~~l~~-~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 92 RSDRVLQHLED------PARALAE-IARVLRPGGRVVVLD 124 (241)
T ss_pred EEechhhccCC------HHHHHHH-HHHHhcCCcEEEEEe
Confidence 98754221111 2467888 799999999888643
No 122
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.03 E-value=2.6e-09 Score=96.72 Aligned_cols=101 Identities=19% Similarity=0.173 Sum_probs=76.7
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
.+..+||+||||+|.++..+++..+ ..+|++||+++++++.|++.+...+ ..+++++.+|+.+.... ...||+|
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g----~~nV~~i~gD~~~~~~~-~~~fD~I 153 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG----IENVIFVCGDGYYGVPE-FAPYDVI 153 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEeCChhhcccc-cCCccEE
Confidence 3557999999999999999888643 2479999999999999999876542 35799999998876543 2579999
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
+++...+. .... +.+.|+|||.+++..
T Consensus 154 i~~~g~~~------------ip~~-~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 154 FVTVGVDE------------VPET-WFTQLKEGGRVIVPI 180 (322)
T ss_pred EECCchHH------------hHHH-HHHhcCCCCEEEEEe
Confidence 99854211 1123 356899999988754
No 123
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.03 E-value=1.3e-09 Score=97.16 Aligned_cols=103 Identities=16% Similarity=0.186 Sum_probs=77.4
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.++.+|||||||+|..+..+++. + .+|+++|+++.+++.+++.....+ .++++...|....- .+++||+|+
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~-g-~~V~avD~s~~ai~~~~~~~~~~~-----l~v~~~~~D~~~~~--~~~~fD~I~ 189 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL-G-FDVTAVDINQQSLENLQEIAEKEN-----LNIRTGLYDINSAS--IQEEYDFIL 189 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHHcC-----CceEEEEechhccc--ccCCccEEE
Confidence 35679999999999999999885 3 599999999999999998876432 26888888876532 257899999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~ 217 (257)
+...-... .+ -....+++. +++.|+|||++++
T Consensus 190 ~~~vl~~l-~~---~~~~~~l~~-~~~~LkpgG~~l~ 221 (287)
T PRK12335 190 STVVLMFL-NR---ERIPAIIKN-MQEHTNPGGYNLI 221 (287)
T ss_pred EcchhhhC-CH---HHHHHHHHH-HHHhcCCCcEEEE
Confidence 87542210 11 113478888 7999999998554
No 124
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.01 E-value=3.4e-09 Score=91.45 Aligned_cols=108 Identities=22% Similarity=0.229 Sum_probs=82.1
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCC------cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCC
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTV------EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE 174 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~------~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~ 174 (257)
.+..++||++||+|-++..++++-+. .+|+++||+|.+++.+++.... .....++++.++.+||.+. .-.+.
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~-~~l~~~~~~~w~~~dAE~L-pFdd~ 176 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKK-RPLKASSRVEWVEGDAEDL-PFDDD 176 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhh-cCCCcCCceEEEeCCcccC-CCCCC
Confidence 45689999999999999999997554 7999999999999999998732 1123567899999998774 45678
Q ss_pred ceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025107 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (257)
Q Consensus 175 ~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~ 217 (257)
.||...+.----+-.. -...+++ ++|+|||||++..
T Consensus 177 s~D~yTiafGIRN~th------~~k~l~E-AYRVLKpGGrf~c 212 (296)
T KOG1540|consen 177 SFDAYTIAFGIRNVTH------IQKALRE-AYRVLKPGGRFSC 212 (296)
T ss_pred cceeEEEecceecCCC------HHHHHHH-HHHhcCCCcEEEE
Confidence 8998877543111001 2356788 7999999998874
No 125
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.01 E-value=2.9e-10 Score=98.39 Aligned_cols=101 Identities=19% Similarity=0.339 Sum_probs=74.6
Q ss_pred CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCC---CeEEEEcchHHHHhcCCCceeEE
Q 025107 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDP---RLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~---rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
.++|||+|||+|.++..|++.. ++|+++|+.++++++|+++.... ..++.+ |+++.+.|+.. ..++||.|
T Consensus 90 g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~d-P~~~~~~~y~l~~~~~~~E~----~~~~fDaV 162 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMD-PVLEGAIAYRLEYEDTDVEG----LTGKFDAV 162 (282)
T ss_pred CceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcC-chhccccceeeehhhcchhh----ccccccee
Confidence 4789999999999999999964 69999999999999999994322 112222 56667777544 34669998
Q ss_pred EEcCC-CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 180 IGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 180 i~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
++--. .+.. .| .+|.+. +.+.|+|+|.+++-
T Consensus 163 vcsevleHV~-dp------~~~l~~-l~~~lkP~G~lfit 194 (282)
T KOG1270|consen 163 VCSEVLEHVK-DP------QEFLNC-LSALLKPNGRLFIT 194 (282)
T ss_pred eeHHHHHHHh-CH------HHHHHH-HHHHhCCCCceEee
Confidence 87532 2221 22 588887 79999999998874
No 126
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.00 E-value=9e-09 Score=96.79 Aligned_cols=136 Identities=20% Similarity=0.155 Sum_probs=89.4
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh-cCCCceeEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVI 179 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~-~~~~~fDvI 179 (257)
.++.+|||+|||.|+.+..+++..+..+|+++|+++..++.+++++...+ .. -++.++.+|+..... ...++||.|
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g--~~-~~v~~~~~d~~~~~~~~~~~~fD~V 313 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLG--LT-IKAETKDGDGRGPSQWAENEQFDRI 313 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcC--CC-eEEEEeccccccccccccccccCEE
Confidence 34589999999999999998886445699999999999999999987543 11 234446677654321 124679999
Q ss_pred EEcCCCCCC----CCccc--CC----------chHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCC
Q 025107 180 IGDLADPIE----GGPCY--KL----------YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243 (257)
Q Consensus 180 i~D~~~~~~----~~p~~--~L----------~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~ 243 (257)
++|++-... ..|.. .. ...+++.. +.+.|||||.++..+.+- . ++.....++.+-+.+|
T Consensus 314 llDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~-a~~~LkpgG~lvystcs~---~-~~Ene~~v~~~l~~~~ 388 (426)
T TIGR00563 314 LLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDA-IWPLLKTGGTLVYATCSV---L-PEENSEQIKAFLQEHP 388 (426)
T ss_pred EEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEeCCC---C-hhhCHHHHHHHHHhCC
Confidence 999873211 01210 00 12578888 789999999999765432 2 2333344444444444
Q ss_pred c
Q 025107 244 C 244 (257)
Q Consensus 244 ~ 244 (257)
.
T Consensus 389 ~ 389 (426)
T TIGR00563 389 D 389 (426)
T ss_pred C
Confidence 3
No 127
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.00 E-value=4.9e-09 Score=96.98 Aligned_cols=103 Identities=10% Similarity=0.151 Sum_probs=81.9
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~ 181 (257)
.+++|||+|||+|.++..++.. . .+|++||+|+..++.|++++..++ -++++++.+|+.+++....++||+|++
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~-~-~~v~~vE~~~~av~~a~~N~~~~~----~~~~~~~~~d~~~~~~~~~~~~D~vi~ 306 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP-D-TQLTGIEIESEAIACAQQSAQMLG----LDNLSFAALDSAKFATAQMSAPELVLV 306 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc-C-CeEEEEECCHHHHHHHHHHHHHcC----CCcEEEEECCHHHHHHhcCCCCCEEEE
Confidence 4578999999999999999874 3 689999999999999999987653 248999999999988543356999999
Q ss_pred cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025107 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (257)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~ 220 (257)
|||.. + ...++++. +. .++|++++.+.+.
T Consensus 307 DPPr~---G-----~~~~~l~~-l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 307 NPPRR---G-----IGKELCDY-LS-QMAPKFILYSSCN 335 (374)
T ss_pred CCCCC---C-----CcHHHHHH-HH-hcCCCeEEEEEeC
Confidence 98742 2 13566666 43 5899999988764
No 128
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.00 E-value=7e-09 Score=97.99 Aligned_cols=103 Identities=16% Similarity=0.204 Sum_probs=80.4
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---CCCceeE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDV 178 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~---~~~~fDv 178 (257)
+..+|||+|||+|.++..+++.. .+|+++|+++.+++.|++++..++ -.+++++.+|+.+++.. ..++||+
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~----~~~v~~~~~d~~~~l~~~~~~~~~fD~ 370 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNG----LDNVTFYHANLEEDFTDQPWALGGFDK 370 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEEeChHHhhhhhhhhcCCCCE
Confidence 45799999999999999998863 699999999999999999987553 24699999999987643 2357999
Q ss_pred EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCC
Q 025107 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (257)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~ 221 (257)
|++|++-. +. .+.++. +. .|+|++++.+.+++
T Consensus 371 Vi~dPPr~---g~------~~~~~~-l~-~~~~~~ivyvSCnp 402 (443)
T PRK13168 371 VLLDPPRA---GA------AEVMQA-LA-KLGPKRIVYVSCNP 402 (443)
T ss_pred EEECcCCc---Ch------HHHHHH-HH-hcCCCeEEEEEeCh
Confidence 99998742 11 244555 44 37999998887654
No 129
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.00 E-value=2.4e-09 Score=99.29 Aligned_cols=101 Identities=23% Similarity=0.373 Sum_probs=77.7
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.++.+|||||||.|.++..++++.+ .+|+++|+++++++.|++... ...+++...|.++. .++||.|+
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g-~~V~giDlS~~~l~~A~~~~~-------~l~v~~~~~D~~~l----~~~fD~Iv 233 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYG-VSVVGVTISAEQQKLAQERCA-------GLPVEIRLQDYRDL----NGQFDRIV 233 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhc-------cCeEEEEECchhhc----CCCCCEEE
Confidence 4567999999999999999998654 599999999999999998763 12478888997653 46899998
Q ss_pred EcCC-CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 181 ~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
+... ... +. -.-..+++. ++++|||||.++++.
T Consensus 234 s~~~~ehv--g~---~~~~~~l~~-i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 234 SVGMFEHV--GP---KNYRTYFEV-VRRCLKPDGLFLLHT 267 (383)
T ss_pred EeCchhhC--Ch---HHHHHHHHH-HHHHcCCCcEEEEEE
Confidence 7542 211 11 112478898 799999999998864
No 130
>PRK06922 hypothetical protein; Provisional
Probab=98.99 E-value=2.9e-09 Score=103.35 Aligned_cols=112 Identities=20% Similarity=0.091 Sum_probs=81.9
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh-cCCCceeEEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVII 180 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~-~~~~~fDvIi 180 (257)
++.+|||||||+|..+..+++..+..+++++|+++.+++.|++..... ..+++++.+|+.+.-. -.+++||+|+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~-----g~~ie~I~gDa~dLp~~fedeSFDvVV 492 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE-----GRSWNVIKGDAINLSSSFEKESVDTIV 492 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc-----CCCeEEEEcchHhCccccCCCCEEEEE
Confidence 468999999999999988887555679999999999999999875432 2478889999887421 2347899999
Q ss_pred EcCCCCCC--CCc-cc----CCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 181 GDLADPIE--GGP-CY----KLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 181 ~D~~~~~~--~~p-~~----~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
+...-++. ..| .. .-....+++. +.++|||||.+++..
T Consensus 493 sn~vLH~L~syIp~~g~~f~~edl~kiLre-I~RVLKPGGrLII~D 537 (677)
T PRK06922 493 YSSILHELFSYIEYEGKKFNHEVIKKGLQS-AYEVLKPGGRIIIRD 537 (677)
T ss_pred EchHHHhhhhhcccccccccHHHHHHHHHH-HHHHcCCCcEEEEEe
Confidence 87532210 001 00 0123578888 799999999999864
No 131
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.99 E-value=3.5e-09 Score=98.09 Aligned_cols=100 Identities=23% Similarity=0.284 Sum_probs=81.9
Q ss_pred CeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcC
Q 025107 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL 183 (257)
Q Consensus 104 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~ 183 (257)
.+|||++||+|..+..+++..+..+|+++|+|+..++.+++++..++ -.+++++.+|+..++.. .++||+|++|+
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~----~~~~~v~~~Da~~~l~~-~~~fD~V~lDP 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNG----LENEKVFNKDANALLHE-ERKFDVVDIDP 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCceEEEhhhHHHHHhh-cCCCCEEEECC
Confidence 58999999999999998875555699999999999999999998774 24577999999998864 56799999998
Q ss_pred CCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 184 ~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
|. .+ .+|+.. +.+.++++|++.+-.
T Consensus 134 ~G----s~------~~~l~~-al~~~~~~gilyvSA 158 (382)
T PRK04338 134 FG----SP------APFLDS-AIRSVKRGGLLCVTA 158 (382)
T ss_pred CC----Cc------HHHHHH-HHHHhcCCCEEEEEe
Confidence 72 22 356666 567789999998753
No 132
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.98 E-value=3.5e-09 Score=95.21 Aligned_cols=105 Identities=11% Similarity=0.118 Sum_probs=78.2
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~ 181 (257)
+..+|||||||+|.++..++++.+..+++++|+ |.+++.++++....+ ..+|++++.+|+++. .-+.+|+|++
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~g---l~~rv~~~~~d~~~~---~~~~~D~v~~ 221 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG---VADRMRGIAVDIYKE---SYPEADAVLF 221 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCC---ccceEEEEecCccCC---CCCCCCEEEe
Confidence 457999999999999999998765679999998 899999999876432 346899999998652 1234799876
Q ss_pred cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
.-.-+.. .+ -.....++. +++.|+|||.+++.
T Consensus 222 ~~~lh~~-~~---~~~~~il~~-~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 222 CRILYSA-NE---QLSTIMCKK-AFDAMRSGGRLLIL 253 (306)
T ss_pred EhhhhcC-Ch---HHHHHHHHH-HHHhcCCCCEEEEE
Confidence 5432110 11 112467888 79999999999875
No 133
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.96 E-value=6.4e-09 Score=93.88 Aligned_cols=105 Identities=17% Similarity=0.105 Sum_probs=74.6
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.++++|||||||+|..+..++... ...|+++|+++.++..++..-.... .++++.+...|..+.- . ...||+|+
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~---~~~~v~~~~~~ie~lp-~-~~~FD~V~ 193 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLD---NDKRAILEPLGIEQLH-E-LYAFDTVF 193 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhc---cCCCeEEEECCHHHCC-C-CCCcCEEE
Confidence 456899999999999998888763 4589999999999876433211111 2467888888865542 2 35899999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
+...-.....| .+++++ +++.|+|||.+++.
T Consensus 194 s~gvL~H~~dp------~~~L~e-l~r~LkpGG~Lvle 224 (314)
T TIGR00452 194 SMGVLYHRKSP------LEHLKQ-LKHQLVIKGELVLE 224 (314)
T ss_pred EcchhhccCCH------HHHHHH-HHHhcCCCCEEEEE
Confidence 87532111122 478898 79999999999875
No 134
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.95 E-value=6.8e-09 Score=88.66 Aligned_cols=105 Identities=19% Similarity=0.172 Sum_probs=80.6
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~ 181 (257)
.+.+||++|||+|.++..+++.. .+++++|+++.+++.+++++.... ..++++...|+.++.....++||+|++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~D~i~~ 118 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDP----LLKIEYRCTSVEDLAEKGAKSFDVVTC 118 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcC----CCceEEEeCCHHHhhcCCCCCccEEEe
Confidence 47899999999999999888753 479999999999999999876432 126889999998886554578999998
Q ss_pred cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
...-..... ...+++. +++.|+|||.+++..
T Consensus 119 ~~~l~~~~~------~~~~l~~-~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 119 MEVLEHVPD------PQAFIRA-CAQLLKPGGILFFST 149 (224)
T ss_pred hhHHHhCCC------HHHHHHH-HHHhcCCCcEEEEEe
Confidence 643211111 2467888 799999999887643
No 135
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.95 E-value=6.2e-09 Score=89.66 Aligned_cols=104 Identities=16% Similarity=0.165 Sum_probs=80.6
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~ 181 (257)
+..+||+||||+|.++..+.+. . .+++++|+++..++.+++++.... .+++++..|..++.....++||+|++
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~-~-~~v~~iD~s~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~fD~Ii~ 120 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL-G-ADVTGIDASEENIEVARLHALESG-----LKIDYRQTTAEELAAEHPGQFDVVTC 120 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc-C-CeEEEEcCCHHHHHHHHHHHHHcC-----CceEEEecCHHHhhhhcCCCccEEEE
Confidence 4679999999999999988885 3 589999999999999998876432 36788889988876555578999998
Q ss_pred cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
...-..... ..++++. +.+.|+|||.+++..
T Consensus 121 ~~~l~~~~~------~~~~l~~-~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 121 MEMLEHVPD------PASFVRA-CAKLVKPGGLVFFST 151 (233)
T ss_pred hhHhhccCC------HHHHHHH-HHHHcCCCcEEEEEe
Confidence 643211111 2467888 799999999988754
No 136
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.94 E-value=1.9e-08 Score=94.59 Aligned_cols=102 Identities=18% Similarity=0.202 Sum_probs=80.8
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC---CCceeE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYDV 178 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~---~~~fDv 178 (257)
+..+|||+|||+|.++..+++. ..+|++||+++.+++.|++++..++ -.+++++.+|+.+++... ...||+
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~----~~nv~~~~~d~~~~l~~~~~~~~~~D~ 365 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNG----IANVEFLAGTLETVLPKQPWAGQIPDV 365 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhC----CCceEEEeCCHHHHHHHHHhcCCCCCE
Confidence 4579999999999999999885 3689999999999999999987653 358999999999877532 357999
Q ss_pred EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
|++|++.. + ...++++. +. .|+|++++.+.+
T Consensus 366 vi~dPPr~---G-----~~~~~l~~-l~-~l~~~~ivyvsc 396 (431)
T TIGR00479 366 LLLDPPRK---G-----CAAEVLRT-II-ELKPERIVYVSC 396 (431)
T ss_pred EEECcCCC---C-----CCHHHHHH-HH-hcCCCEEEEEcC
Confidence 99998742 1 13566776 44 489999877654
No 137
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=9.9e-09 Score=85.10 Aligned_cols=102 Identities=18% Similarity=0.191 Sum_probs=76.6
Q ss_pred CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025107 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
.-+.+.|+|+|||+|.++..++.. +..+|++||+||+.+++++++.+.. ..++.+++.|..++ ..++|.+
T Consensus 43 ~l~g~~V~DlG~GTG~La~ga~~l-Ga~~V~~vdiD~~a~ei~r~N~~~l-----~g~v~f~~~dv~~~----~~~~dtv 112 (198)
T COG2263 43 DLEGKTVLDLGAGTGILAIGAALL-GASRVLAVDIDPEALEIARANAEEL-----LGDVEFVVADVSDF----RGKFDTV 112 (198)
T ss_pred CcCCCEEEEcCCCcCHHHHHHHhc-CCcEEEEEecCHHHHHHHHHHHHhh-----CCceEEEEcchhhc----CCccceE
Confidence 345788999999999999988876 4589999999999999999997642 35899999997765 5789999
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
++|||-+.. ..+ ..++|+.. +.+.- +.++.++
T Consensus 113 imNPPFG~~---~rh-aDr~Fl~~-Ale~s--~vVYsiH 144 (198)
T COG2263 113 IMNPPFGSQ---RRH-ADRPFLLK-ALEIS--DVVYSIH 144 (198)
T ss_pred EECCCCccc---ccc-CCHHHHHH-HHHhh--heEEEee
Confidence 999974331 112 46677776 33322 4455553
No 138
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.93 E-value=1.2e-08 Score=90.25 Aligned_cols=94 Identities=19% Similarity=0.306 Sum_probs=71.0
Q ss_pred CCCeEEEEeccchHHHHHHHhcCC---CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKT---VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~---~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv 178 (257)
...+|||+|||+|..+..+++..+ ..+++++|+++.+++.|++.. +++++.++|+.+. .-.++.||+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---------~~~~~~~~d~~~l-p~~~~sfD~ 154 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---------PQVTFCVASSHRL-PFADQSLDA 154 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---------CCCeEEEeecccC-CCcCCceeE
Confidence 457899999999999998876422 137999999999999998752 4678899997653 233578999
Q ss_pred EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
|+.... | .++++ ++++|+|||.+++-.
T Consensus 155 I~~~~~------~-------~~~~e-~~rvLkpgG~li~~~ 181 (272)
T PRK11088 155 IIRIYA------P-------CKAEE-LARVVKPGGIVITVT 181 (272)
T ss_pred EEEecC------C-------CCHHH-HHhhccCCCEEEEEe
Confidence 986421 2 12356 688999999998754
No 139
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.93 E-value=8.5e-09 Score=87.64 Aligned_cols=133 Identities=14% Similarity=0.112 Sum_probs=84.9
Q ss_pred CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025107 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
.+++.+||+||||+|..+..+.+..+..++++||+++++++.|++++ ++++++.+|+.+. ...++||+|
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~---------~~~~~~~~d~~~~--~~~~sfD~V 109 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL---------PNINIIQGSLFDP--FKDNFFDLV 109 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC---------CCCcEEEeeccCC--CCCCCEEEE
Confidence 35678999999999999999988634469999999999999999853 3567888887762 345789999
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCC------CChH-HHHHHHHHHhhhCCceEEEe
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIF------SHTE-VFSCIYNTLRQVFKCGCCAL 249 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~------~~~~-~~~~~~~~l~~~F~~v~~~~ 249 (257)
++...-... .| . .-..++++ +.++++ +-+++.....|... .... ..++..+.+.+.||..+.-.
T Consensus 110 ~~~~vL~hl-~p-~--~~~~~l~e-l~r~~~-~~v~i~e~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~~~~l~~~~ 180 (204)
T TIGR03587 110 LTKGVLIHI-NP-D--NLPTAYRE-LYRCSN-RYILIAEYYNPSPVEISYRGNSGRLWKRDFAGEMMDRYPDLKLVD 180 (204)
T ss_pred EECChhhhC-CH-H--HHHHHHHH-HHhhcC-cEEEEEEeeCCCceeeeeeCCcchhhhhhHHHHHHHhCCcceeee
Confidence 987642110 12 1 12467777 677763 23333332222100 0111 12344566666788765544
No 140
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.93 E-value=8.7e-09 Score=95.09 Aligned_cols=101 Identities=23% Similarity=0.214 Sum_probs=85.5
Q ss_pred CeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025107 104 KTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (257)
Q Consensus 104 ~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D 182 (257)
.+|||+.+|+|..+.++++. ++..+|+++|+||..++.++++...++ ..+++++.+|+..++....++||+|++|
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~----~~~~~v~~~Da~~~l~~~~~~fDvIdlD 121 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS----VENIEVPNEDAANVLRYRNRKFHVIDID 121 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence 58999999999999999886 356899999999999999999998763 3478999999999998766789999999
Q ss_pred CCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
++. .| .+|+.. +.+.++++|++.+-+
T Consensus 122 PfG----s~------~~fld~-al~~~~~~glL~vTa 147 (374)
T TIGR00308 122 PFG----TP------APFVDS-AIQASAERGLLLVTA 147 (374)
T ss_pred CCC----Cc------HHHHHH-HHHhcccCCEEEEEe
Confidence 863 22 267787 678899999988763
No 141
>PRK05785 hypothetical protein; Provisional
Probab=98.91 E-value=2.4e-08 Score=86.22 Aligned_cols=100 Identities=16% Similarity=0.146 Sum_probs=71.5
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
+++.+|||||||+|.++..+.+.. ..+|+++|+++++++.|++.. ..+.+|+.+. .-.+++||+|+
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~------------~~~~~d~~~l-p~~d~sfD~v~ 115 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD------------DKVVGSFEAL-PFRDKSFDVVM 115 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc------------ceEEechhhC-CCCCCCEEEEE
Confidence 347899999999999999998864 358999999999999998631 2456787653 44568899999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCC
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~ 222 (257)
+...-.+... ....+++ ++++|+|.. .++..+.|
T Consensus 116 ~~~~l~~~~d------~~~~l~e-~~RvLkp~~-~ile~~~p 149 (226)
T PRK05785 116 SSFALHASDN------IEKVIAE-FTRVSRKQV-GFIAMGKP 149 (226)
T ss_pred ecChhhccCC------HHHHHHH-HHHHhcCce-EEEEeCCC
Confidence 8654222111 2467888 799999953 23344333
No 142
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.91 E-value=9.2e-09 Score=88.16 Aligned_cols=112 Identities=17% Similarity=0.234 Sum_probs=78.4
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccC------------------------------
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE------------------------------ 151 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~------------------------------ 151 (257)
.++.+|||||-.|.++..++++.+...|.+||||+..|+.|+++.+....
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 47899999999999999999988878999999999999999998754310
Q ss_pred --------CCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccC-CchHHHHHHHHcCcCCCCcEEEEe
Q 025107 152 --------AFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYK-LYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 152 --------~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~-L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
.+...|..+-.. ++|.....+||+|++=.-.-|. -..++ -=-..||+. +.+.|.|||++++.
T Consensus 138 t~~~p~n~~f~~~n~vle~~---dfl~~~~~~fDiIlcLSiTkWI-HLNwgD~GL~~ff~k-is~ll~pgGiLvvE 208 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESD---DFLDMIQPEFDIILCLSITKWI-HLNWGDDGLRRFFRK-ISSLLHPGGILVVE 208 (288)
T ss_pred cccCCcchhcccccEEEecc---hhhhhccccccEEEEEEeeeeE-ecccccHHHHHHHHH-HHHhhCcCcEEEEc
Confidence 001112222222 2444456789999976543221 00000 013689999 79999999999985
No 143
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.89 E-value=8.5e-09 Score=88.24 Aligned_cols=110 Identities=13% Similarity=0.070 Sum_probs=75.5
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhcc--------CCCCCCCeEEEEcchHHHHhcC
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK--------EAFSDPRLELVINDARAELESR 172 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~--------~~~~~~rv~i~~~Da~~~l~~~ 172 (257)
+++.+||++|||.|..+..++.+ + -+|++||+++..++.+.+...... ......+++++++|..++-...
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~-G-~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ-G-HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 45579999999999999999986 3 589999999999998644222110 0012457999999988764322
Q ss_pred CCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025107 173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (257)
Q Consensus 173 ~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~ 217 (257)
.++||.|+--..-.. ..| -....+++. +.+.|+|||.+++
T Consensus 111 ~~~fD~i~D~~~~~~-l~~---~~R~~~~~~-l~~lLkpgG~~ll 150 (213)
T TIGR03840 111 LGPVDAVYDRAALIA-LPE---EMRQRYAAH-LLALLPPGARQLL 150 (213)
T ss_pred CCCcCEEEechhhcc-CCH---HHHHHHHHH-HHHHcCCCCeEEE
Confidence 467998875433111 011 123457888 7999999996443
No 144
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.89 E-value=7.7e-09 Score=98.36 Aligned_cols=104 Identities=17% Similarity=0.193 Sum_probs=77.8
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH-HhcCCCceeEEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LESRKESYDVII 180 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~-l~~~~~~fDvIi 180 (257)
+.++||+||||+|..+..+++.. .+|+++|+++.+++.+++... ..++++++.+|+... +....++||+|+
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~------~~~~i~~~~~d~~~~~~~~~~~~fD~I~ 108 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESING------HYKNVKFMCADVTSPDLNISDGSVDLIF 108 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhc------cCCceEEEEecccccccCCCCCCEEEEe
Confidence 45789999999999999999863 589999999999998776322 236889999998642 223357899999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
+...-... + .--..++++. +++.|+|||++++.
T Consensus 109 ~~~~l~~l--~--~~~~~~~l~~-~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 109 SNWLLMYL--S--DKEVENLAER-MVKWLKVGGYIFFR 141 (475)
T ss_pred hhhhHHhC--C--HHHHHHHHHH-HHHhcCCCeEEEEE
Confidence 98642210 1 0012578888 79999999999875
No 145
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.89 E-value=2.6e-08 Score=84.89 Aligned_cols=105 Identities=20% Similarity=0.282 Sum_probs=85.2
Q ss_pred CCCCeEEEEeccchHHHHHHHh-cCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-----CCC
Q 025107 101 PNPKTIFIMGGGEGSTAREILR-HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-----RKE 174 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-----~~~ 174 (257)
-.+|++|+||.=+|..+...+. .|+..+|+++|+|++..+++.+.....+ -+.+++++++++.+-|.+ ..+
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag---v~~KI~~i~g~a~esLd~l~~~~~~~ 148 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG---VDHKITFIEGPALESLDELLADGESG 148 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc---ccceeeeeecchhhhHHHHHhcCCCC
Confidence 4789999999999998765554 5777899999999999999988776554 568999999999988764 247
Q ss_pred ceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 175 ~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
+||++|+|+.-. .|. .++++ +-+.|++||++++.
T Consensus 149 tfDfaFvDadK~--------nY~-~y~e~-~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 149 TFDFAFVDADKD--------NYS-NYYER-LLRLLRVGGVIVVD 182 (237)
T ss_pred ceeEEEEccchH--------HHH-HHHHH-HHhhcccccEEEEe
Confidence 899999997521 233 77888 58899999999874
No 146
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.88 E-value=4.3e-08 Score=90.33 Aligned_cols=100 Identities=14% Similarity=0.207 Sum_probs=77.7
Q ss_pred CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC----------
Q 025107 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---------- 172 (257)
Q Consensus 103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~---------- 172 (257)
+.+|||++||+|.++..+++. ..+|++||+++.+++.++++...++ -.+++++.+|+.++++..
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~~~~----~~~v~~~~~d~~~~l~~~~~~~~~~~~~ 280 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIAANG----IDNVQIIRMSAEEFTQAMNGVREFNRLK 280 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHHhC----CCcEEEEECCHHHHHHHHhhcccccccc
Confidence 357999999999999988875 3699999999999999999987663 248999999999987542
Q ss_pred -----CCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025107 173 -----KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (257)
Q Consensus 173 -----~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~ 220 (257)
..+||+|++|||.. + ...+.++. +. +|++++.+.++
T Consensus 281 ~~~~~~~~~D~v~lDPPR~---G-----~~~~~l~~-l~---~~~~ivyvSC~ 321 (362)
T PRK05031 281 GIDLKSYNFSTIFVDPPRA---G-----LDDETLKL-VQ---AYERILYISCN 321 (362)
T ss_pred cccccCCCCCEEEECCCCC---C-----CcHHHHHH-HH---ccCCEEEEEeC
Confidence 12599999999842 2 13455565 33 37888888764
No 147
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.88 E-value=2.2e-08 Score=90.01 Aligned_cols=112 Identities=14% Similarity=0.111 Sum_probs=76.8
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCC----c
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE----S 175 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~----~ 175 (257)
+++.+||++|||+|..++.+++... ..++++||+++++++.+++.+.... ..-+++.+.+|..+.+.-... .
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~---p~~~v~~i~gD~~~~~~~~~~~~~~~ 138 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY---PQLEVHGICADFTQPLALPPEPAAGR 138 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC---CCceEEEEEEcccchhhhhcccccCC
Confidence 4567899999999999999988632 3689999999999999998765321 123466789998765432211 2
Q ss_pred eeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025107 176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (257)
Q Consensus 176 fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~ 220 (257)
..+++++..-.+. .+ -....+++. +++.|+|||.+++-..
T Consensus 139 ~~~~~~gs~~~~~-~~---~e~~~~L~~-i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 139 RLGFFPGSTIGNF-TP---EEAVAFLRR-IRQLLGPGGGLLIGVD 178 (301)
T ss_pred eEEEEecccccCC-CH---HHHHHHHHH-HHHhcCCCCEEEEecc
Confidence 3345555432221 11 113578998 7999999999997543
No 148
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.87 E-value=9.6e-09 Score=86.20 Aligned_cols=105 Identities=19% Similarity=0.244 Sum_probs=80.4
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeE-EEEcchHHHHhcCCCceeEEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLE-LVINDARAELESRKESYDVII 180 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~-i~~~Da~~~l~~~~~~fDvIi 180 (257)
..-+||++|||+|..-...-- .+..+||.+|.++.+-+.+.+.+.-. ..+++. ++++|+++..+-.+.+||.|+
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~E~----k~~~~~~fvva~ge~l~~l~d~s~DtVV 150 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAAEK----KPLQVERFVVADGENLPQLADGSYDTVV 150 (252)
T ss_pred CccceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHhhc----cCcceEEEEeechhcCcccccCCeeeEE
Confidence 345789999999998766432 25689999999999999999987644 346776 999999987656778999999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
...-- +..--..+.+++ ++++|+|||++++.
T Consensus 151 ~TlvL------CSve~~~k~L~e-~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 151 CTLVL------CSVEDPVKQLNE-VRRLLRPGGRIIFI 181 (252)
T ss_pred EEEEE------eccCCHHHHHHH-HHHhcCCCcEEEEE
Confidence 87541 111113567888 79999999988864
No 149
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.87 E-value=1.7e-07 Score=86.05 Aligned_cols=100 Identities=14% Similarity=0.173 Sum_probs=77.6
Q ss_pred CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC---------C
Q 025107 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---------K 173 (257)
Q Consensus 103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~---------~ 173 (257)
+.+|||+|||+|.++..+++.. .+|++||+++++++.|++++..++ -.+++++.+|+.+++... .
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 271 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANN----IDNVQIIRMSAEEFTQAMNGVREFRRLK 271 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEEcCHHHHHHHHhhcccccccc
Confidence 4579999999999999888753 599999999999999999987663 247999999999988641 1
Q ss_pred ------CceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025107 174 ------ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (257)
Q Consensus 174 ------~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~ 220 (257)
.+||+|++|||.. +. ..++++. +. +|++++.+.+.
T Consensus 272 ~~~~~~~~~d~v~lDPPR~---G~-----~~~~l~~-l~---~~~~ivYvsC~ 312 (353)
T TIGR02143 272 GIDLKSYNCSTIFVDPPRA---GL-----DPDTCKL-VQ---AYERILYISCN 312 (353)
T ss_pred ccccccCCCCEEEECCCCC---CC-----cHHHHHH-HH---cCCcEEEEEcC
Confidence 2489999999842 21 3455565 33 47898888764
No 150
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.86 E-value=2.6e-08 Score=85.13 Aligned_cols=102 Identities=17% Similarity=0.189 Sum_probs=74.2
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.+.++|||||||+|.++..+++. . .+|+++|+++++++.|++.+.... ...++++..+|+.+. .++||+|+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~-~-~~v~gvD~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~~~~----~~~fD~ii 124 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR-G-AIVKAVDISEQMVQMARNRAQGRD---VAGNVEFEVNDLLSL----CGEFDIVV 124 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhcC---CCCceEEEECChhhC----CCCcCEEE
Confidence 35789999999999999999885 3 589999999999999999876432 224799999997653 27899998
Q ss_pred EcCC-CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025107 181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (257)
Q Consensus 181 ~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~ 217 (257)
+-.. ... +... ...+++. +.+.+++++++.+
T Consensus 125 ~~~~l~~~---~~~~--~~~~l~~-i~~~~~~~~~i~~ 156 (219)
T TIGR02021 125 CMDVLIHY---PASD--MAKALGH-LASLTKERVIFTF 156 (219)
T ss_pred EhhHHHhC---CHHH--HHHHHHH-HHHHhCCCEEEEE
Confidence 7432 211 1111 2356777 6777887766654
No 151
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.85 E-value=4.9e-09 Score=88.73 Aligned_cols=100 Identities=25% Similarity=0.401 Sum_probs=74.7
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.+...|||+.||-|.++..++++...++|.++|++|..++..+++..+++ -..++.++.+|+++++. ...+|.|+
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNk---v~~~i~~~~~D~~~~~~--~~~~drvi 174 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNK---VENRIEVINGDAREFLP--EGKFDRVI 174 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT----TTTEEEEES-GGG-----TT-EEEEE
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcC---CCCeEEEEcCCHHHhcC--ccccCEEE
Confidence 46789999999999999999997666899999999999999999998875 34689999999999987 68899999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEE
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~ 216 (257)
++.+.. +.+|+.. +.+.++++|++-
T Consensus 175 m~lp~~----------~~~fl~~-~~~~~~~~g~ih 199 (200)
T PF02475_consen 175 MNLPES----------SLEFLDA-ALSLLKEGGIIH 199 (200)
T ss_dssp E--TSS----------GGGGHHH-HHHHEEEEEEEE
T ss_pred ECChHH----------HHHHHHH-HHHHhcCCcEEE
Confidence 997631 2367777 678899999864
No 152
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.83 E-value=1e-08 Score=82.40 Aligned_cols=96 Identities=23% Similarity=0.248 Sum_probs=67.8
Q ss_pred CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025107 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
.++.++||+||||.|.++..+.+. + .+++++|+++.+++. .+ +.....+... ....+++||+|
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~~g~D~~~~~~~~--~~------------~~~~~~~~~~-~~~~~~~fD~i 82 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR-G-FEVTGVDISPQMIEK--RN------------VVFDNFDAQD-PPFPDGSFDLI 82 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT-T-SEEEEEESSHHHHHH--TT------------SEEEEEECHT-HHCHSSSEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh-C-CEEEEEECCHHHHhh--hh------------hhhhhhhhhh-hhccccchhhH
Confidence 367789999999999999999775 3 399999999999988 11 1111111111 12245799999
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
++...-.. -+ --..+++. ++++|||||++++..
T Consensus 83 ~~~~~l~~--~~----d~~~~l~~-l~~~LkpgG~l~~~~ 115 (161)
T PF13489_consen 83 ICNDVLEH--LP----DPEEFLKE-LSRLLKPGGYLVISD 115 (161)
T ss_dssp EEESSGGG--SS----HHHHHHHH-HHHCEEEEEEEEEEE
T ss_pred hhHHHHhh--cc----cHHHHHHH-HHHhcCCCCEEEEEE
Confidence 98754221 11 13578888 799999999998865
No 153
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.81 E-value=2.1e-08 Score=84.28 Aligned_cols=104 Identities=18% Similarity=0.168 Sum_probs=73.9
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.++.++||||||.|..+..+++. + -.|+++|+++..++.+++..... .-.++....|..++- .+++||+|+
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~-G-~~VtAvD~s~~al~~l~~~a~~~-----~l~i~~~~~Dl~~~~--~~~~yD~I~ 99 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQ-G-FDVTAVDISPVALEKLQRLAEEE-----GLDIRTRVADLNDFD--FPEEYDFIV 99 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHT-T--EEEEEESSHHHHHHHHHHHHHT-----T-TEEEEE-BGCCBS---TTTEEEEE
T ss_pred cCCCcEEEcCCCCcHHHHHHHHC-C-CeEEEEECCHHHHHHHHHHHhhc-----CceeEEEEecchhcc--ccCCcCEEE
Confidence 46789999999999999999996 4 48999999999999988765433 124888888865542 347899999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
+...-..- .+ . .-...++. +++.++|||++++.
T Consensus 100 st~v~~fL-~~--~-~~~~i~~~-m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 100 STVVFMFL-QR--E-LRPQIIEN-MKAATKPGGYNLIV 132 (192)
T ss_dssp EESSGGGS--G--G-GHHHHHHH-HHHTEEEEEEEEEE
T ss_pred EEEEeccC-CH--H-HHHHHHHH-HHhhcCCcEEEEEE
Confidence 76432110 11 1 23567888 79999999988764
No 154
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.80 E-value=8.7e-08 Score=83.62 Aligned_cols=144 Identities=16% Similarity=0.177 Sum_probs=93.4
Q ss_pred CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE----EcchHHHHhcCCCc
Q 025107 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV----INDARAELESRKES 175 (257)
Q Consensus 100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~----~~Da~~~l~~~~~~ 175 (257)
+.++..+|++|||+|+++..+++.-+..+|++||.++..+.+|.++..... ...++.++ ..|...-.....++
T Consensus 146 ~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~---l~g~i~v~~~~me~d~~~~~~l~~~~ 222 (328)
T KOG2904|consen 146 HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK---LSGRIEVIHNIMESDASDEHPLLEGK 222 (328)
T ss_pred hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh---hcCceEEEecccccccccccccccCc
Confidence 445668999999999999999886456899999999999999999976432 24577777 44544433334589
Q ss_pred eeEEEEcCCC-C---CC--------CCcccCCc--------hHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHH
Q 025107 176 YDVIIGDLAD-P---IE--------GGPCYKLY--------TKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY 235 (257)
Q Consensus 176 fDvIi~D~~~-~---~~--------~~p~~~L~--------t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~ 235 (257)
+|+|+++++- . .. ..|...|. -.-++.. +.++|+|||.+.++.+.- -.++.....++
T Consensus 223 ~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~-a~R~Lq~gg~~~le~~~~--~~~~~lv~~~m 299 (328)
T KOG2904|consen 223 IDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLL-ATRMLQPGGFEQLELVER--KEHSYLVRIWM 299 (328)
T ss_pred eeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHh-hHhhcccCCeEEEEeccc--ccCcHHHHHHH
Confidence 9999999972 1 10 11211111 1245555 589999999999987532 12334444444
Q ss_pred HHHhh-hCCceEEEe
Q 025107 236 NTLRQ-VFKCGCCAL 249 (257)
Q Consensus 236 ~~l~~-~F~~v~~~~ 249 (257)
..+.. .+..+.++.
T Consensus 300 ~s~~~d~~~~~~v~~ 314 (328)
T KOG2904|consen 300 ISLKDDSNGKAAVVS 314 (328)
T ss_pred Hhchhhccchhheee
Confidence 44332 355554443
No 155
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.79 E-value=2.5e-08 Score=85.65 Aligned_cols=107 Identities=11% Similarity=0.031 Sum_probs=75.0
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhcc--------CCCCCCCeEEEEcchHHHHhcC
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK--------EAFSDPRLELVINDARAELESR 172 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~--------~~~~~~rv~i~~~Da~~~l~~~ 172 (257)
++..+||++|||.|..+..++.+ + .+|++||+++..++.+.+...+.. ..+...+++++.+|..++-...
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~-G-~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ-G-HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC-C-CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 45579999999999999999985 3 589999999999998643221110 0123578999999998874333
Q ss_pred CCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcE
Q 025107 173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGI 214 (257)
Q Consensus 173 ~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGi 214 (257)
...||.|+--..-.. ..| -....+++. +.+.|+|||+
T Consensus 114 ~~~fd~v~D~~~~~~-l~~---~~R~~~~~~-l~~lL~pgG~ 150 (218)
T PRK13255 114 LADVDAVYDRAALIA-LPE---EMRERYVQQ-LAALLPAGCR 150 (218)
T ss_pred CCCeeEEEehHhHhh-CCH---HHHHHHHHH-HHHHcCCCCe
Confidence 367999885432111 011 124577888 7999999985
No 156
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.78 E-value=2e-08 Score=86.04 Aligned_cols=131 Identities=18% Similarity=0.224 Sum_probs=87.3
Q ss_pred CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025107 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
++..+.++++|||+|..++-++.|+ ++|+++|+++.++++|+++++... .+-..++...|....+. .++..|+|
T Consensus 31 ~~~h~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~y---~~t~~~ms~~~~v~L~g-~e~SVDlI 104 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVTY---CHTPSTMSSDEMVDLLG-GEESVDLI 104 (261)
T ss_pred CCCcceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCccc---ccCCccccccccccccC-CCcceeee
Confidence 4444589999999998888888886 689999999999999999876431 22233444455555442 36889999
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCc-EEEEecCCCCCCCChHHHHHHHHHHhhhCCc
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG-IFVTQAGPAGIFSHTEVFSCIYNTLRQVFKC 244 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgG-il~~~~~~~~~~~~~~~~~~~~~~l~~~F~~ 244 (257)
++.-.-+| +-..+||+. ++++|+++| +++++...-+....++...-+++...+..|.
T Consensus 105 ~~Aqa~HW-------Fdle~fy~~-~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~~~p~ 162 (261)
T KOG3010|consen 105 TAAQAVHW-------FDLERFYKE-AYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDSTLPY 162 (261)
T ss_pred hhhhhHHh-------hchHHHHHH-HHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhccCch
Confidence 87644333 224689998 899999976 8888763212122344444444444444443
No 157
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.78 E-value=1e-07 Score=81.57 Aligned_cols=101 Identities=19% Similarity=0.150 Sum_probs=70.5
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
+++.+||+||||+|.++..+++.. .+|+++|+++.+++.|++++...+ ...+++++.+|. . ...+.||+|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~-~---~~~~~fD~v~ 132 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAG---LAGNITFEVGDL-E---SLLGRFDTVV 132 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcC---CccCcEEEEcCc-h---hccCCcCEEE
Confidence 456799999999999999998863 479999999999999999876432 225889999993 2 2347799998
Q ss_pred EcCC-CCCCCCcccCCchHHHHHHHHcCcCCCCcEEE
Q 025107 181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (257)
Q Consensus 181 ~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~ 216 (257)
+... .+. +.. .....++. +.+.+++++++.
T Consensus 133 ~~~~l~~~---~~~--~~~~~l~~-l~~~~~~~~~i~ 163 (230)
T PRK07580 133 CLDVLIHY---PQE--DAARMLAH-LASLTRGSLIFT 163 (230)
T ss_pred EcchhhcC---CHH--HHHHHHHH-HHhhcCCeEEEE
Confidence 7543 121 101 12355666 566665444443
No 158
>PRK06202 hypothetical protein; Provisional
Probab=98.75 E-value=4.8e-08 Score=84.26 Aligned_cols=103 Identities=16% Similarity=0.141 Sum_probs=69.6
Q ss_pred CCCCeEEEEeccchHHHHHHHhc----CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCce
Q 025107 101 PNPKTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESY 176 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~f 176 (257)
.++.+|||||||+|.++..+++. .+..+|+++|+++.+++.|++.... +++++...|+... ...+++|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-------~~~~~~~~~~~~l-~~~~~~f 130 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-------PGVTFRQAVSDEL-VAEGERF 130 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-------CCCeEEEEecccc-cccCCCc
Confidence 45679999999999998887753 2235899999999999999986532 3456666554332 2245789
Q ss_pred eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
|+|++...-+.- .+ -...++++. +++.++ |.++++
T Consensus 131 D~V~~~~~lhh~-~d---~~~~~~l~~-~~r~~~--~~~~i~ 165 (232)
T PRK06202 131 DVVTSNHFLHHL-DD---AEVVRLLAD-SAALAR--RLVLHN 165 (232)
T ss_pred cEEEECCeeecC-Ch---HHHHHHHHH-HHHhcC--eeEEEe
Confidence 999998542221 11 012468888 688887 444444
No 159
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.75 E-value=3.7e-08 Score=81.17 Aligned_cols=140 Identities=19% Similarity=0.334 Sum_probs=86.5
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~ 181 (257)
+..+||++|||.|.++..|++..=....++||.++..+++|+......+ .+..+++...|..+- ....++||+|+-
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~---~~n~I~f~q~DI~~~-~~~~~qfdlvlD 142 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG---FSNEIRFQQLDITDP-DFLSGQFDLVLD 142 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC---CCcceeEEEeeccCC-cccccceeEEee
Confidence 3459999999999999999985322359999999999999987765443 233488888886553 223467777763
Q ss_pred cCC-CCCC---CCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh-CCceEEEeecCccc
Q 025107 182 DLA-DPIE---GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCGCCALFSSYSF 255 (257)
Q Consensus 182 D~~-~~~~---~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~~~~~~~ 255 (257)
-.+ +... ..+..++ .-++.. +.+.|+|||++++.... |...+ +...+... |....-..++++.|
T Consensus 143 KGT~DAisLs~d~~~~r~--~~Y~d~-v~~ll~~~gifvItSCN---~T~dE----Lv~~f~~~~f~~~~tvp~ptF~F 211 (227)
T KOG1271|consen 143 KGTLDAISLSPDGPVGRL--VVYLDS-VEKLLSPGGIFVITSCN---FTKDE----LVEEFENFNFEYLSTVPTPTFMF 211 (227)
T ss_pred cCceeeeecCCCCcccce--eeehhh-HhhccCCCcEEEEEecC---ccHHH----HHHHHhcCCeEEEEeeccceEEe
Confidence 221 1111 0222222 223455 68899999999986532 44333 33333333 54444444454444
No 160
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.74 E-value=2.7e-08 Score=87.85 Aligned_cols=111 Identities=15% Similarity=0.195 Sum_probs=72.9
Q ss_pred CCCeEEEEeccchH----HHHHHHhcC-----CCcEEEEEECCHHHHHHHHhhhh----hc--------------cCCC-
Q 025107 102 NPKTIFIMGGGEGS----TAREILRHK-----TVEKVVMCDIDEEVVEFCKSYLV----VN--------------KEAF- 153 (257)
Q Consensus 102 ~~~~VL~IG~G~G~----~~~~l~~~~-----~~~~v~~VEid~~vi~~a~~~~~----~~--------------~~~~- 153 (257)
++.+|+++|||+|. ++..+++.. ...+|+++|+|+.+++.|++..- .. ++.+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 444444431 13589999999999999998531 00 0000
Q ss_pred ----CCCCeEEEEcchHHHHhcCCCceeEEEEcCC-CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 154 ----SDPRLELVINDARAELESRKESYDVIIGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 154 ----~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
-..++++...|..+.- ...++||+|++-.. ... .+ -....+++. +++.|+|||.+++-.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~-~~~~~fD~I~crnvl~yf--~~---~~~~~~l~~-l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAES-PPLGDFDLIFCRNVLIYF--DE---PTQRKLLNR-FAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCC-CccCCCCEEEechhHHhC--CH---HHHHHHHHH-HHHHhCCCeEEEEEC
Confidence 0137888888876532 23578999998432 111 10 113468888 799999999999853
No 161
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.72 E-value=1.3e-07 Score=85.45 Aligned_cols=80 Identities=18% Similarity=0.246 Sum_probs=60.6
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc-cCCCCCCCeEEEE-cchHHHHh---cCCCce
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-KEAFSDPRLELVI-NDARAELE---SRKESY 176 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~-~~~~~~~rv~i~~-~Da~~~l~---~~~~~f 176 (257)
...++||||||+|.+...++......+++++|||+..++.|++++..+ + -..+++++. .|...... ...++|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~---l~~~I~~~~~~~~~~i~~~i~~~~~~f 190 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPG---LNGAIRLRLQKDSKAIFKGIIHKNERF 190 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccC---CcCcEEEEEccchhhhhhcccccCCce
Confidence 457999999999988766665433468999999999999999998865 2 235788864 44444333 235789
Q ss_pred eEEEEcCC
Q 025107 177 DVIIGDLA 184 (257)
Q Consensus 177 DvIi~D~~ 184 (257)
|+|+++||
T Consensus 191 DlivcNPP 198 (321)
T PRK11727 191 DATLCNPP 198 (321)
T ss_pred EEEEeCCC
Confidence 99999997
No 162
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.68 E-value=6.5e-07 Score=80.26 Aligned_cols=76 Identities=22% Similarity=0.349 Sum_probs=62.5
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.+..+||+||||.|.++..+++.. .+|+++|+|+++++.+++.+...+ ..++++++.+|+.+.- ...||+|+
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~---~~~~v~ii~~Dal~~~---~~~~d~Vv 106 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSP---LASKLEVIEGDALKTE---FPYFDVCV 106 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcC---CCCcEEEEECCHhhhc---ccccCEEE
Confidence 355789999999999999999853 589999999999999999876432 2468999999997742 24789999
Q ss_pred EcCC
Q 025107 181 GDLA 184 (257)
Q Consensus 181 ~D~~ 184 (257)
.+++
T Consensus 107 aNlP 110 (294)
T PTZ00338 107 ANVP 110 (294)
T ss_pred ecCC
Confidence 8876
No 163
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.67 E-value=5.3e-07 Score=86.57 Aligned_cols=129 Identities=15% Similarity=0.108 Sum_probs=98.2
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-CCceeEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVI 179 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-~~~fDvI 179 (257)
.+..-+|+||||.|..+.++++..+...+.++|+....+..+.+..... +-.++.++.+|+..+...- +.+.|.|
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~----~l~N~~~~~~~~~~~~~~~~~~sv~~i 421 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQ----NITNFLLFPNNLDLILNDLPNNSLDGI 421 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHc----CCCeEEEEcCCHHHHHHhcCcccccEE
Confidence 3456899999999999988888656679999999999887776654332 2368889999986655443 4779999
Q ss_pred EEcCCCCCCCCc--ccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhh
Q 025107 180 IGDLADPIEGGP--CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (257)
Q Consensus 180 i~D~~~~~~~~p--~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (257)
++.-+|||-... ...+.+.+|++. +++.|+|||.+-+.+. ....+..++..+.+
T Consensus 422 ~i~FPDPWpKkrh~krRl~~~~fl~~-~~~~Lk~gG~i~~~TD------~~~y~~~~~~~~~~ 477 (506)
T PRK01544 422 YILFPDPWIKNKQKKKRIFNKERLKI-LQDKLKDNGNLVFASD------IENYFYEAIELIQQ 477 (506)
T ss_pred EEECCCCCCCCCCccccccCHHHHHH-HHHhcCCCCEEEEEcC------CHHHHHHHHHHHHh
Confidence 999999984221 347889999999 8999999999988653 24455555566554
No 164
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.67 E-value=3.3e-07 Score=82.88 Aligned_cols=103 Identities=16% Similarity=0.106 Sum_probs=70.7
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccC-CCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKE-AFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~-~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
++.+|||||||+|.++..+++. + .+|+++|+++.+++.+++++..... .....++++...|.... .++||+|+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~-g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~fD~Vv 217 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE-G-AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----SGKYDTVT 217 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----CCCcCEEE
Confidence 4679999999999999999985 3 5899999999999999998753210 01234678888996543 47899998
Q ss_pred EcCC-CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025107 181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (257)
Q Consensus 181 ~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~ 217 (257)
+-.. .+. |. . ...++++. ++ .+.++|+++.
T Consensus 218 ~~~vL~H~---p~-~-~~~~ll~~-l~-~l~~g~liIs 248 (315)
T PLN02585 218 CLDVLIHY---PQ-D-KADGMIAH-LA-SLAEKRLIIS 248 (315)
T ss_pred EcCEEEec---CH-H-HHHHHHHH-HH-hhcCCEEEEE
Confidence 6432 111 10 0 11345665 45 4667777664
No 165
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.66 E-value=1e-06 Score=83.63 Aligned_cols=135 Identities=18% Similarity=0.176 Sum_probs=95.6
Q ss_pred CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
.++.+|||+++|.|+=+.+++... +...|+++|+++.-++..++++...+ -.++.+...|++.+.......||.|
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G----~~nv~v~~~D~~~~~~~~~~~fD~I 187 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG----VSNVALTHFDGRVFGAALPETFDAI 187 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEeCchhhhhhhchhhcCeE
Confidence 355799999999999888887753 33589999999999999999887542 3578999999988655555789999
Q ss_pred EEcCCCCCC----CCccc-CC-----------chHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCC
Q 025107 180 IGDLADPIE----GGPCY-KL-----------YTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFK 243 (257)
Q Consensus 180 i~D~~~~~~----~~p~~-~L-----------~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~ 243 (257)
++|++-... ..|.. .- ..++.+.. +.+.|+|||+++-.+.+ + .++..+.+++.+-+.++
T Consensus 188 LvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~-A~~~LkpGG~LVYSTCT---~-~~eENE~vV~~~L~~~~ 262 (470)
T PRK11933 188 LLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIES-AFHALKPGGTLVYSTCT---L-NREENQAVCLWLKETYP 262 (470)
T ss_pred EEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHH-HHHHcCCCcEEEEECCC---C-CHHHHHHHHHHHHHHCC
Confidence 999984221 11210 01 12577777 68999999999755433 3 34555566665555555
Q ss_pred c
Q 025107 244 C 244 (257)
Q Consensus 244 ~ 244 (257)
.
T Consensus 263 ~ 263 (470)
T PRK11933 263 D 263 (470)
T ss_pred C
Confidence 4
No 166
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.66 E-value=1.3e-07 Score=89.35 Aligned_cols=106 Identities=19% Similarity=0.313 Sum_probs=73.6
Q ss_pred CCeEEEEeccchHHHHHHHhc----CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025107 103 PKTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (257)
Q Consensus 103 ~~~VL~IG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv 178 (257)
.+.||++|+|+|-+...+++. ....+|.+||.++..+...++....++ + +.+|+++.+|.+++- .+++.|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~--w-~~~V~vi~~d~r~v~--lpekvDI 261 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG--W-GDKVTVIHGDMREVE--LPEKVDI 261 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT--T-TTTEEEEES-TTTSC--HSS-EEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC--C-CCeEEEEeCcccCCC--CCCceeE
Confidence 467999999999998776653 235699999999998877766544332 3 468999999998873 3579999
Q ss_pred EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
|++-..... +- .+ ...|.+.. ..+.|||+|+++-+
T Consensus 262 IVSElLGsf--g~-nE-l~pE~Lda-~~rfLkp~Gi~IP~ 296 (448)
T PF05185_consen 262 IVSELLGSF--GD-NE-LSPECLDA-ADRFLKPDGIMIPS 296 (448)
T ss_dssp EEE---BTT--BT-TT-SHHHHHHH-GGGGEEEEEEEESS
T ss_pred EEEeccCCc--cc-cc-cCHHHHHH-HHhhcCCCCEEeCc
Confidence 999987432 21 23 35677887 78999999998843
No 167
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.65 E-value=7.9e-08 Score=78.67 Aligned_cols=76 Identities=22% Similarity=0.261 Sum_probs=56.9
Q ss_pred CeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCC-C-ceeEEEE
Q 025107 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-E-SYDVIIG 181 (257)
Q Consensus 104 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~-~-~fDvIi~ 181 (257)
+.|+|+.||.|+.+.++++.. .+|++||+||.-++.|+.+...-+ ...|++++++|..+.++... . .||+|++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYG---v~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYG---VADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT----GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred CEEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 368999999999999999974 589999999999999999987543 35799999999999987643 2 2899999
Q ss_pred cCC
Q 025107 182 DLA 184 (257)
Q Consensus 182 D~~ 184 (257)
+||
T Consensus 76 SPP 78 (163)
T PF09445_consen 76 SPP 78 (163)
T ss_dssp ---
T ss_pred CCC
Confidence 986
No 168
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.65 E-value=1.1e-07 Score=79.52 Aligned_cols=73 Identities=18% Similarity=0.249 Sum_probs=61.5
Q ss_pred CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCceeE
Q 025107 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV 178 (257)
Q Consensus 100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fDv 178 (257)
.++..+|||||||+|.+...+.+.. ..+..+||+|++-+..+.+. .+.++.+|+-+.|.. .++.||.
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~r-----------Gv~Viq~Dld~gL~~f~d~sFD~ 78 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVAR-----------GVSVIQGDLDEGLADFPDQSFDY 78 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHHc-----------CCCEEECCHHHhHhhCCCCCccE
Confidence 3567899999999999999988865 46899999999988887753 578999999999875 5688999
Q ss_pred EEEcCC
Q 025107 179 IIGDLA 184 (257)
Q Consensus 179 Ii~D~~ 184 (257)
||+.-+
T Consensus 79 VIlsqt 84 (193)
T PF07021_consen 79 VILSQT 84 (193)
T ss_pred EehHhH
Confidence 998754
No 169
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.62 E-value=1.4e-07 Score=80.25 Aligned_cols=103 Identities=20% Similarity=0.245 Sum_probs=71.6
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~ 181 (257)
...++||+|+|-|-++..++.. -..+|+.||..+..++.|++++... ...-.+++..-..+|.. ...+||+|.+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~-~f~~VDlVEp~~~Fl~~a~~~l~~~----~~~v~~~~~~gLQ~f~P-~~~~YDlIW~ 128 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLP-VFDEVDLVEPVEKFLEQAKEYLGKD----NPRVGEFYCVGLQDFTP-EEGKYDLIWI 128 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCC-C-SEEEEEES-HHHHHHHHHHTCCG----GCCEEEEEES-GGG-----TT-EEEEEE
T ss_pred CcceEEecccccchhHHHHHHH-hcCEeEEeccCHHHHHHHHHHhccc----CCCcceEEecCHhhccC-CCCcEeEEEe
Confidence 4579999999999999988774 3579999999999999999987642 12234666666666642 2468999999
Q ss_pred cCCCCCCCCcccCCch---HHHHHHHHcCcCCCCcEEEEe
Q 025107 182 DLADPIEGGPCYKLYT---KSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 182 D~~~~~~~~p~~~L~t---~ef~~~~~~~~L~pgGil~~~ 218 (257)
-..- .+|.. .+|++. +++.|+|+|++++.
T Consensus 129 QW~l-------ghLTD~dlv~fL~R-Ck~~L~~~G~IvvK 160 (218)
T PF05891_consen 129 QWCL-------GHLTDEDLVAFLKR-CKQALKPNGVIVVK 160 (218)
T ss_dssp ES-G-------GGS-HHHHHHHHHH-HHHHEEEEEEEEEE
T ss_pred hHhh-------ccCCHHHHHHHHHH-HHHhCcCCcEEEEE
Confidence 8542 34554 479999 59999999999984
No 170
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.61 E-value=9.3e-08 Score=82.91 Aligned_cols=98 Identities=22% Similarity=0.233 Sum_probs=74.0
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
...++|||||+|.|..+..+++..+..+++++|+ |.+++.+++ .+|++++.+|.+ ...+. +|+|+
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----------~~rv~~~~gd~f---~~~P~-~D~~~ 163 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----------ADRVEFVPGDFF---DPLPV-ADVYL 163 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----------TTTEEEEES-TT---TCCSS-ESEEE
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----------ccccccccccHH---hhhcc-cccee
Confidence 3457899999999999999998766789999999 999999998 379999999976 34445 99998
Q ss_pred EcCC-CCCCCCcccCCchHHHHHHHHcCcCCCC--cEEEEec
Q 025107 181 GDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPE--GIFVTQA 219 (257)
Q Consensus 181 ~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pg--Gil~~~~ 219 (257)
+--. ..+ .+ -.....++. +++.|+|| |.+++..
T Consensus 164 l~~vLh~~--~d---~~~~~iL~~-~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 164 LRHVLHDW--SD---EDCVKILRN-AAAALKPGKDGRLLIIE 199 (241)
T ss_dssp EESSGGGS---H---HHHHHHHHH-HHHHSEECTTEEEEEEE
T ss_pred eehhhhhc--ch---HHHHHHHHH-HHHHhCCCCCCeEEEEe
Confidence 8654 222 11 124577888 79999998 9887753
No 171
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.60 E-value=6.7e-07 Score=79.61 Aligned_cols=156 Identities=17% Similarity=0.178 Sum_probs=95.3
Q ss_pred EEcCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCC
Q 025107 73 VIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA 152 (257)
Q Consensus 73 ~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~ 152 (257)
.+|-.+++. .-+.+..-|++ .-+.++|||||||.|..+-.+++. +.+.|+++|-++...-.++---.+.+
T Consensus 93 ~IDtEWrSd----~KW~rl~p~l~---~L~gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~lf~~QF~~i~~~lg-- 162 (315)
T PF08003_consen 93 HIDTEWRSD----WKWDRLLPHLP---DLKGKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPLFYLQFEAIKHFLG-- 162 (315)
T ss_pred eeccccccc----chHHHHHhhhC---CcCCCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChHHHHHHHHHHHHhC--
Confidence 345444432 23455444443 347899999999999999999986 56799999998877654332111111
Q ss_pred CCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC-CCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC----------C
Q 025107 153 FSDPRLELVINDARAELESRKESYDVIIGDLAD-PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG----------P 221 (257)
Q Consensus 153 ~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~-~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~----------~ 221 (257)
.+.++ .....+.+.+.. .+.||+|++=.-- +- ..| .+.+++ +++.|+|||.+++.+- .
T Consensus 163 -~~~~~-~~lplgvE~Lp~-~~~FDtVF~MGVLYHr-r~P------l~~L~~-Lk~~L~~gGeLvLETlvi~g~~~~~L~ 231 (315)
T PF08003_consen 163 -QDPPV-FELPLGVEDLPN-LGAFDTVFSMGVLYHR-RSP------LDHLKQ-LKDSLRPGGELVLETLVIDGDENTVLV 231 (315)
T ss_pred -CCccE-EEcCcchhhccc-cCCcCEEEEeeehhcc-CCH------HHHHHH-HHHhhCCCCEEEEEEeeecCCCceEEc
Confidence 12232 333456677766 6789999985321 11 123 367778 7999999999986531 1
Q ss_pred --------CCCCCChHHHHHHHHHHhhh-CCceEEEee
Q 025107 222 --------AGIFSHTEVFSCIYNTLRQV-FKCGCCALF 250 (257)
Q Consensus 222 --------~~~~~~~~~~~~~~~~l~~~-F~~v~~~~~ 250 (257)
+++|. .+....+.+-|++. |..++....
T Consensus 232 P~~rYa~m~nv~F-iPs~~~L~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 232 PEDRYAKMRNVWF-IPSVAALKNWLERAGFKDVRCVDV 268 (315)
T ss_pred cCCcccCCCceEE-eCCHHHHHHHHHHcCCceEEEecC
Confidence 11111 12345566666554 888776654
No 172
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=7.3e-07 Score=83.81 Aligned_cols=104 Identities=19% Similarity=0.227 Sum_probs=86.0
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCC--CceeEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK--ESYDVI 179 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~--~~fDvI 179 (257)
..+++||+=||.|.++..+++. ..+|++||++++.++.|+++...++ -.+++++.+|+.++..... ..+|+|
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~----i~N~~f~~~~ae~~~~~~~~~~~~d~V 366 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANG----IDNVEFIAGDAEEFTPAWWEGYKPDVV 366 (432)
T ss_pred CCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcC----CCcEEEEeCCHHHHhhhccccCCCCEE
Confidence 4478999999999999999964 5799999999999999999998774 3459999999999997753 678999
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCC
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~ 221 (257)
++|||... ..+++.+. + ..++|..++.+.+++
T Consensus 367 vvDPPR~G--------~~~~~lk~-l-~~~~p~~IvYVSCNP 398 (432)
T COG2265 367 VVDPPRAG--------ADREVLKQ-L-AKLKPKRIVYVSCNP 398 (432)
T ss_pred EECCCCCC--------CCHHHHHH-H-HhcCCCcEEEEeCCH
Confidence 99998532 14577776 3 578999999887654
No 173
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=2.8e-07 Score=77.58 Aligned_cols=119 Identities=21% Similarity=0.234 Sum_probs=84.2
Q ss_pred hHHHHHHHHHhhcCCCCCeEEEEeccchHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhhhhhc------cCCCCCCCe
Q 025107 87 IYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRH--KTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFSDPRL 158 (257)
Q Consensus 87 ~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~a~~~~~~~------~~~~~~~rv 158 (257)
.|.++|-.+--.+ .+..+.|++|.|+|.++..+... .+...+.+||.-|++++.+++++... ...+..+++
T Consensus 68 mha~~le~L~~~L-~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l 146 (237)
T KOG1661|consen 68 MHATALEYLDDHL-QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGEL 146 (237)
T ss_pred HHHHHHHHHHHhh-ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCce
Confidence 4555554332112 35679999999999998776643 22234599999999999999987532 234677899
Q ss_pred EEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025107 159 ELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (257)
Q Consensus 159 ~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~ 220 (257)
.++++|++..- ....+||.|.+-+..+. .| +. +-..|++||.+++-.+
T Consensus 147 ~ivvGDgr~g~-~e~a~YDaIhvGAaa~~--~p----------q~-l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 147 SIVVGDGRKGY-AEQAPYDAIHVGAAASE--LP----------QE-LLDQLKPGGRLLIPVG 194 (237)
T ss_pred EEEeCCccccC-CccCCcceEEEccCccc--cH----------HH-HHHhhccCCeEEEeec
Confidence 99999998864 34588999999876432 22 34 4567899888887543
No 174
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.53 E-value=3.6e-07 Score=76.73 Aligned_cols=92 Identities=16% Similarity=0.196 Sum_probs=65.5
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh-cCCCceeEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVI 179 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~-~~~~~fDvI 179 (257)
++.++|||||||+|.++..+++..+ .+++++|+++++++.+++ .+++++.+|+.+.+. ..+++||+|
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~-~~~~giD~s~~~i~~a~~-----------~~~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQ-VRGYGIEIDQDGVLACVA-----------RGVNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccC-CcEEEEeCCHHHHHHHHH-----------cCCeEEEEEhhhcccccCCCCcCEE
Confidence 3567999999999999988876543 578999999999998864 246788899876543 334689999
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCC
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNP 211 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~p 211 (257)
++...-.+... ...++++ +.+.+++
T Consensus 80 i~~~~l~~~~d------~~~~l~e-~~r~~~~ 104 (194)
T TIGR02081 80 ILSQTLQATRN------PEEILDE-MLRVGRH 104 (194)
T ss_pred EEhhHhHcCcC------HHHHHHH-HHHhCCe
Confidence 99754222111 2456676 5666553
No 175
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=5.1e-06 Score=68.61 Aligned_cols=127 Identities=22% Similarity=0.226 Sum_probs=92.2
Q ss_pred CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
..++-+|+||||+|.+...+.+. .+.....+.||||...+..++-...+ .-+++.+..|...-++. ++.|++
T Consensus 42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n-----~~~~~~V~tdl~~~l~~--~~VDvL 114 (209)
T KOG3191|consen 42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN-----RVHIDVVRTDLLSGLRN--ESVDVL 114 (209)
T ss_pred cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc-----CCccceeehhHHhhhcc--CCccEE
Confidence 34788999999999999888874 33456789999999999988877665 35689999999998876 899999
Q ss_pred EEcCC-CCCCCCcc--------------cCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025107 180 IGDLA-DPIEGGPC--------------YKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (257)
Q Consensus 180 i~D~~-~~~~~~p~--------------~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (257)
+.+++ -|....+. ..-.+..++.+ +..+|+|.|++.+..... ...+++.+.+++.
T Consensus 115 vfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~-v~~iLSp~Gv~Ylv~~~~------N~p~ei~k~l~~~ 184 (209)
T KOG3191|consen 115 VFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQ-VPDILSPRGVFYLVALRA------NKPKEILKILEKK 184 (209)
T ss_pred EECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhh-hhhhcCcCceEEeeehhh------cCHHHHHHHHhhc
Confidence 99986 23221110 01113456777 689999999998875433 2234666666655
No 176
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.51 E-value=4.5e-07 Score=79.75 Aligned_cols=73 Identities=18% Similarity=0.367 Sum_probs=61.0
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~ 181 (257)
+.++||+||||.|.++..+++.. .+|+++|+|+.+++.+++.+.. .++++++.+|+.++- -..||.|+.
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~------~~~v~ii~~D~~~~~---~~~~d~Vv~ 97 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIA------AGNVEIIEGDALKVD---LPEFNKVVS 97 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhcc------CCCEEEEEeccccCC---chhceEEEE
Confidence 46799999999999999999973 5899999999999999987642 368999999987642 245899999
Q ss_pred cCCC
Q 025107 182 DLAD 185 (257)
Q Consensus 182 D~~~ 185 (257)
+++-
T Consensus 98 NlPy 101 (258)
T PRK14896 98 NLPY 101 (258)
T ss_pred cCCc
Confidence 9763
No 177
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.49 E-value=2.1e-06 Score=78.09 Aligned_cols=106 Identities=25% Similarity=0.288 Sum_probs=88.0
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.++..|||+-+|-|.++..++++.. .+|.++||||..++..++++.+|+ -..++..+.+|+++..... ..+|.|+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~-~~V~A~diNP~A~~~L~eNi~LN~---v~~~v~~i~gD~rev~~~~-~~aDrIi 261 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGR-PKVYAIDINPDAVEYLKENIRLNK---VEGRVEPILGDAREVAPEL-GVADRII 261 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCC-ceEEEEecCHHHHHHHHHHHHhcC---ccceeeEEeccHHHhhhcc-ccCCEEE
Confidence 4589999999999999999999754 359999999999999999999885 3456999999999998654 7799999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCC
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~ 222 (257)
+..+.. +.+|+.. +.+.++++|++-.....+
T Consensus 262 m~~p~~----------a~~fl~~-A~~~~k~~g~iHyy~~~~ 292 (341)
T COG2520 262 MGLPKS----------AHEFLPL-ALELLKDGGIIHYYEFVP 292 (341)
T ss_pred eCCCCc----------chhhHHH-HHHHhhcCcEEEEEeccc
Confidence 987631 3466776 788899999998776444
No 178
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.49 E-value=3.5e-08 Score=84.11 Aligned_cols=100 Identities=21% Similarity=0.308 Sum_probs=73.9
Q ss_pred CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh-cCCCceeEEEE
Q 025107 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVIIG 181 (257)
Q Consensus 103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~-~~~~~fDvIi~ 181 (257)
-+++|+||||+|.+.-.+... +.++++|||+..|++.|.+.=-. =++.++|+..|++ ..+++||+|..
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eKg~Y---------D~L~~Aea~~Fl~~~~~er~DLi~A 194 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEKGLY---------DTLYVAEAVLFLEDLTQERFDLIVA 194 (287)
T ss_pred cceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhccch---------HHHHHHHHHHHhhhccCCcccchhh
Confidence 589999999999998887664 46899999999999999874211 1567788888997 46789999975
Q ss_pred cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025107 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (257)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~ 220 (257)
.---+.. + .| ..+|.. +...|+|||.+++...
T Consensus 195 aDVl~Yl-G---~L--e~~~~~-aa~~L~~gGlfaFSvE 226 (287)
T COG4976 195 ADVLPYL-G---AL--EGLFAG-AAGLLAPGGLFAFSVE 226 (287)
T ss_pred hhHHHhh-c---ch--hhHHHH-HHHhcCCCceEEEEec
Confidence 3211110 1 11 245565 6899999999998653
No 179
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.44 E-value=6.2e-07 Score=79.46 Aligned_cols=74 Identities=16% Similarity=0.254 Sum_probs=58.9
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.++.+||+||||+|.++..++++. .+|+++|+|+++++.+++.+. +++++++++|+.++-- ..-.+|.|+
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~-------~~~v~~i~~D~~~~~~-~~~~~~~vv 110 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFA-------EDNLTIIEGDALKVDL-SELQPLKVV 110 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhc-------cCceEEEEChhhcCCH-HHcCcceEE
Confidence 356789999999999999999974 389999999999999998652 2689999999887521 111158898
Q ss_pred EcCC
Q 025107 181 GDLA 184 (257)
Q Consensus 181 ~D~~ 184 (257)
.+++
T Consensus 111 ~NlP 114 (272)
T PRK00274 111 ANLP 114 (272)
T ss_pred EeCC
Confidence 8865
No 180
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.44 E-value=2.5e-06 Score=69.55 Aligned_cols=105 Identities=18% Similarity=0.208 Sum_probs=80.4
Q ss_pred CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH---Hhc-CCCc
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---LES-RKES 175 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~---l~~-~~~~ 175 (257)
.....||++|.|+|.+++.++++. ....++++|.+++.+...++.++ .++++.+|+.+. +.+ ....
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p---------~~~ii~gda~~l~~~l~e~~gq~ 117 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP---------GVNIINGDAFDLRTTLGEHKGQF 117 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC---------CccccccchhhHHHHHhhcCCCe
Confidence 356789999999999999999962 33689999999999999888653 456899998763 333 3467
Q ss_pred eeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 176 fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
||.||+..+--+ -|. -.+.+.++. +..+|..||.++.-.
T Consensus 118 ~D~viS~lPll~--~P~--~~~iaile~-~~~rl~~gg~lvqft 156 (194)
T COG3963 118 FDSVISGLPLLN--FPM--HRRIAILES-LLYRLPAGGPLVQFT 156 (194)
T ss_pred eeeEEecccccc--CcH--HHHHHHHHH-HHHhcCCCCeEEEEE
Confidence 999999987422 221 125678888 789999999888654
No 181
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.44 E-value=1.5e-06 Score=72.41 Aligned_cols=112 Identities=22% Similarity=0.231 Sum_probs=75.2
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCc---------EEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVE---------KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES 171 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~---------~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~ 171 (257)
.+...+||--||+|+++.|++...... ++.+.|+|+++++.|++++...+ ....+.+...|+.+.- .
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag---~~~~i~~~~~D~~~l~-~ 102 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG---VEDYIDFIQWDARELP-L 102 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT----CGGEEEEE--GGGGG-G
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc---cCCceEEEecchhhcc-c
Confidence 345789999999999998887642222 38899999999999999987543 2457899999998864 3
Q ss_pred CCCceeEEEEcCCCCCCCCc---ccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 172 RKESYDVIIGDLADPIEGGP---CYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 172 ~~~~fDvIi~D~~~~~~~~p---~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
..+.+|+|++|+|-....+. ...|| .+|++. ++++|++..++++.
T Consensus 103 ~~~~~d~IvtnPPyG~r~~~~~~~~~ly-~~~~~~-~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 103 PDGSVDAIVTNPPYGRRLGSKKDLEKLY-RQFLRE-LKRVLKPRAVFLTT 150 (179)
T ss_dssp TTSBSCEEEEE--STTSHCHHHHHHHHH-HHHHHH-HHCHSTTCEEEEEE
T ss_pred ccCCCCEEEECcchhhhccCHHHHHHHH-HHHHHH-HHHHCCCCEEEEEE
Confidence 45789999999974332111 11233 567787 79999995555554
No 182
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.43 E-value=1.7e-06 Score=74.65 Aligned_cols=110 Identities=13% Similarity=0.067 Sum_probs=77.5
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc--------cCCCCCCCeEEEEcchHHHHh--
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN--------KEAFSDPRLELVINDARAELE-- 170 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~--------~~~~~~~rv~i~~~Da~~~l~-- 170 (257)
+++.+||+.|||.|.-+..|+.. + -+|++||+++..++.+.+..... ...+...+++++++|.+++-.
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~-G-~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK-G-VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC-C-CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 45679999999999999999996 3 37999999999999986632111 011234689999999988622
Q ss_pred cCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025107 171 SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (257)
Q Consensus 171 ~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~ 217 (257)
...++||+|+--.+-.. -| .-....+.+. +.+.|+|||.++.
T Consensus 120 ~~~~~fD~VyDra~~~A--lp--p~~R~~Y~~~-l~~lL~pgg~lll 161 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIA--LP--NDLRTNYAKM-MLEVCSNNTQILL 161 (226)
T ss_pred cccCCcCeeeeehhHhc--CC--HHHHHHHHHH-HHHHhCCCcEEEE
Confidence 22368999875544211 12 1124567777 7999999997664
No 183
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=1.7e-06 Score=75.86 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=61.1
Q ss_pred CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025107 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (257)
Q Consensus 103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D 182 (257)
...||+||.|.|+++..+++.. .+|++||+|+..++..++.+.. .++++++++|+.++=-..-.+++.|+.+
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~------~~n~~vi~~DaLk~d~~~l~~~~~vVaN 102 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERFAP------YDNLTVINGDALKFDFPSLAQPYKVVAN 102 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhccc------ccceEEEeCchhcCcchhhcCCCEEEEc
Confidence 5789999999999999999964 5899999999999999988752 3699999999977522111178999999
Q ss_pred CC
Q 025107 183 LA 184 (257)
Q Consensus 183 ~~ 184 (257)
.|
T Consensus 103 lP 104 (259)
T COG0030 103 LP 104 (259)
T ss_pred CC
Confidence 76
No 184
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.42 E-value=5e-06 Score=70.42 Aligned_cols=144 Identities=15% Similarity=0.153 Sum_probs=98.6
Q ss_pred hHHHHHHHHHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchH
Q 025107 87 IYHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR 166 (257)
Q Consensus 87 ~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~ 166 (257)
.|.++++... ..+..+||.+|.|-|.+...+-..++ .+-+.+|-.|.|.+..|++-.. +..+|.+..+-=.
T Consensus 89 piMha~A~ai---~tkggrvLnVGFGMgIidT~iQe~~p-~~H~IiE~hp~V~krmr~~gw~-----ek~nViil~g~We 159 (271)
T KOG1709|consen 89 PIMHALAEAI---STKGGRVLNVGFGMGIIDTFIQEAPP-DEHWIIEAHPDVLKRMRDWGWR-----EKENVIILEGRWE 159 (271)
T ss_pred HHHHHHHHHH---hhCCceEEEeccchHHHHHHHhhcCC-cceEEEecCHHHHHHHHhcccc-----cccceEEEecchH
Confidence 4555444222 25788999999999999999888766 4778899999999999987543 3467777776544
Q ss_pred HHHhc-CCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCce
Q 025107 167 AELES-RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCG 245 (257)
Q Consensus 167 ~~l~~-~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v 245 (257)
+.+.. .++.||-|+-|.+.+. .--+++|++. +-+.|||+|++..--+. ...+ ..+..+++..
T Consensus 160 Dvl~~L~d~~FDGI~yDTy~e~------yEdl~~~hqh-~~rLLkP~gv~SyfNg~----~~~~------~~~~~vy~~l 222 (271)
T KOG1709|consen 160 DVLNTLPDKHFDGIYYDTYSEL------YEDLRHFHQH-VVRLLKPEGVFSYFNGL----GADN------LMFYDVYKIL 222 (271)
T ss_pred hhhccccccCcceeEeechhhH------HHHHHHHHHH-HhhhcCCCceEEEecCc----ccch------hhhhhhhhee
Confidence 44444 2467999999998532 1225789998 89999999999853221 1111 2244556666
Q ss_pred EEEeecCcccc
Q 025107 246 CCALFSSYSFF 256 (257)
Q Consensus 246 ~~~~~~~~~~~ 256 (257)
..+...++++=
T Consensus 223 V~iev~~~g~~ 233 (271)
T KOG1709|consen 223 VMIEVATYGVP 233 (271)
T ss_pred EEEEeecCCCc
Confidence 66666666553
No 185
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.38 E-value=2.7e-06 Score=74.49 Aligned_cols=73 Identities=22% Similarity=0.371 Sum_probs=59.4
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCcee---
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD--- 177 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fD--- 177 (257)
.+..+||+||||+|.++..+++.. .+++++|+|+.+++.+++.+.. .++++++.+|+.+.-. ..||
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~------~~~v~v~~~D~~~~~~---~~~d~~~ 96 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL------YERLEVIEGDALKVDL---PDFPKQL 96 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc------CCcEEEEECchhcCCh---hHcCCcc
Confidence 456899999999999999999875 4699999999999999987642 4689999999876432 2466
Q ss_pred EEEEcCC
Q 025107 178 VIIGDLA 184 (257)
Q Consensus 178 vIi~D~~ 184 (257)
+|+.+++
T Consensus 97 ~vvsNlP 103 (253)
T TIGR00755 97 KVVSNLP 103 (253)
T ss_pred eEEEcCC
Confidence 8888765
No 186
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.38 E-value=1.3e-06 Score=75.02 Aligned_cols=107 Identities=14% Similarity=0.145 Sum_probs=75.8
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHh-hhhhcc-------CCCCCCCeEEEEcchHHHHhcC
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKS-YLVVNK-------EAFSDPRLELVINDARAELESR 172 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~-~~~~~~-------~~~~~~rv~i~~~Da~~~l~~~ 172 (257)
+.+.+||+.|||.|.-+..++.+ + -+|++||+++..++.+.+ +...+. ..+...+++++.+|.+++-...
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~-G-~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQ-G-HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHT-T-EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCCeEEEeCCCChHHHHHHHHC-C-CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 45569999999999999999996 4 589999999999999843 221010 0134578999999998864444
Q ss_pred CCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcE
Q 025107 173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGI 214 (257)
Q Consensus 173 ~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGi 214 (257)
.++||+|+=-.+-.. -| .-....+.+. +++.|+|||.
T Consensus 114 ~g~fD~iyDr~~l~A--lp--p~~R~~Ya~~-l~~ll~p~g~ 150 (218)
T PF05724_consen 114 VGKFDLIYDRTFLCA--LP--PEMRERYAQQ-LASLLKPGGR 150 (218)
T ss_dssp HHSEEEEEECSSTTT--S---GGGHHHHHHH-HHHCEEEEEE
T ss_pred cCCceEEEEeccccc--CC--HHHHHHHHHH-HHHHhCCCCc
Confidence 468999986554321 22 1235677777 8999999998
No 187
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.35 E-value=2e-06 Score=73.03 Aligned_cols=106 Identities=19% Similarity=0.157 Sum_probs=77.7
Q ss_pred CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025107 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (257)
Q Consensus 103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D 182 (257)
+.=|||||||+|..+..+... + -..++|||+|.|+++|.+. ... -.++.+|.=+-+...+++||-+|+-
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~-G-h~wiGvDiSpsML~~a~~~-e~e--------gdlil~DMG~GlpfrpGtFDg~ISI 119 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDS-G-HQWIGVDISPSMLEQAVER-ELE--------GDLILCDMGEGLPFRPGTFDGVISI 119 (270)
T ss_pred CcEEEEeccCCCcchheeccC-C-ceEEeecCCHHHHHHHHHh-hhh--------cCeeeeecCCCCCCCCCccceEEEe
Confidence 667999999999999887763 4 4788999999999999962 111 2466677666676778999987775
Q ss_pred CCCCCC-------CCcccCCchHHHHHHHHcCcCCCCcEEEEecCCC
Q 025107 183 LADPIE-------GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (257)
Q Consensus 183 ~~~~~~-------~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~ 222 (257)
..-.|. ..|. .--.-||.. +..+|++|+..++|..+.
T Consensus 120 SAvQWLcnA~~s~~~P~--~Rl~~FF~t-Ly~~l~rg~raV~QfYpe 163 (270)
T KOG1541|consen 120 SAVQWLCNADKSLHVPK--KRLLRFFGT-LYSCLKRGARAVLQFYPE 163 (270)
T ss_pred eeeeeecccCccccChH--HHHHHHhhh-hhhhhccCceeEEEeccc
Confidence 543221 1221 122478998 799999999999998654
No 188
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.27 E-value=6.7e-07 Score=67.59 Aligned_cols=97 Identities=22% Similarity=0.147 Sum_probs=45.8
Q ss_pred EEEeccchHHHHHHHhcC-CC--cEEEEEECCHH---HHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCC-CceeEE
Q 025107 107 FIMGGGEGSTAREILRHK-TV--EKVVMCDIDEE---VVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-ESYDVI 179 (257)
Q Consensus 107 L~IG~G~G~~~~~l~~~~-~~--~~v~~VEid~~---vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~-~~fDvI 179 (257)
|+||+..|..+..+++.- .. .++++||.++. .-+..++ .. ...+++++.+|..+.+.... ++||+|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~------~~~~~~~~~g~s~~~l~~~~~~~~dli 73 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AG------LSDRVEFIQGDSPDFLPSLPDGPIDLI 73 (106)
T ss_dssp --------------------------EEEESS-------------GG------G-BTEEEEES-THHHHHHHHH--EEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cC------CCCeEEEEEcCcHHHHHHcCCCCEEEE
Confidence 689998999888777642 22 37999999995 3333333 11 23589999999999887655 899999
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
++|..... -.....++. +.++|+|||+++++
T Consensus 74 ~iDg~H~~-------~~~~~dl~~-~~~~l~~ggviv~d 104 (106)
T PF13578_consen 74 FIDGDHSY-------EAVLRDLEN-ALPRLAPGGVIVFD 104 (106)
T ss_dssp EEES---H-------HHHHHHHHH-HGGGEEEEEEEEEE
T ss_pred EECCCCCH-------HHHHHHHHH-HHHHcCCCeEEEEe
Confidence 99975311 123456777 68999999999875
No 189
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.27 E-value=4.5e-06 Score=82.74 Aligned_cols=113 Identities=15% Similarity=0.120 Sum_probs=78.1
Q ss_pred CCeEEEEeccchHHHHHHHhc--------CC----CcEEEEEECCHHH---HHHHH-----------hhhh-h----cc-
Q 025107 103 PKTIFIMGGGEGSTAREILRH--------KT----VEKVVMCDIDEEV---VEFCK-----------SYLV-V----NK- 150 (257)
Q Consensus 103 ~~~VL~IG~G~G~~~~~l~~~--------~~----~~~v~~VEid~~v---i~~a~-----------~~~~-~----~~- 150 (257)
.-+||++|.|+|.....+.+. ++ .-+++.+|.+|.. +..+- +... . ++
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 468999999999965444321 11 2478999986622 22221 1110 0 00
Q ss_pred --CCCCCC--CeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 151 --EAFSDP--RLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 151 --~~~~~~--rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
-.+.+. +++++.+|+++.++....++|+|++|.|+|.. .| .+++.++|+. ++++++|||++++.+
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~-np--~~W~~~~~~~-l~~~~~~~~~~~t~t 206 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAK-NP--DMWSPNLFNA-LARLARPGATLATFT 206 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCcc-Ch--hhccHHHHHH-HHHHhCCCCEEEEee
Confidence 011223 45688999999998777789999999998753 34 7999999999 899999999999754
No 190
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.26 E-value=3.1e-06 Score=77.80 Aligned_cols=117 Identities=18% Similarity=0.223 Sum_probs=73.1
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---------
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--------- 171 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--------- 171 (257)
+.+.+|||+-||.|.++..+++. ..+|++||+++.+++.|++++..++ -.+++++.+++.++...
T Consensus 195 ~~~~~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~----i~n~~f~~~~~~~~~~~~~~~r~~~~ 268 (352)
T PF05958_consen 195 LSKGDVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNG----IDNVEFIRGDAEDFAKALAKAREFNR 268 (352)
T ss_dssp T-TTEEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT------SEEEEE--SHHCCCHHCCS-GGTT
T ss_pred cCCCcEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcC----CCcceEEEeeccchhHHHHhhHHHHh
Confidence 34458999999999999999885 4699999999999999999998873 46899999887665321
Q ss_pred ------CCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhC
Q 025107 172 ------RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF 242 (257)
Q Consensus 172 ------~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F 242 (257)
...++|+|++|||... . ...+.+. +.+ + .=++.+-++ +..+.+=++.|.+.|
T Consensus 269 ~~~~~~~~~~~d~vilDPPR~G---~-----~~~~~~~-~~~-~--~~ivYvSCn-------P~tlaRDl~~L~~~y 326 (352)
T PF05958_consen 269 LKGIDLKSFKFDAVILDPPRAG---L-----DEKVIEL-IKK-L--KRIVYVSCN-------PATLARDLKILKEGY 326 (352)
T ss_dssp GGGS-GGCTTESEEEE---TT----S-----CHHHHHH-HHH-S--SEEEEEES--------HHHHHHHHHHHHCCE
T ss_pred hhhhhhhhcCCCEEEEcCCCCC---c-----hHHHHHH-Hhc-C--CeEEEEECC-------HHHHHHHHHHHhhcC
Confidence 1236999999998532 1 2445555 442 3 335555443 344444445565544
No 191
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.25 E-value=4.6e-06 Score=69.01 Aligned_cols=108 Identities=22% Similarity=0.293 Sum_probs=63.9
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH---hcCCCcee
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL---ESRKESYD 177 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l---~~~~~~fD 177 (257)
.++++||+||+|+|..+..+++..+..+|++-|.++ +++..+.+...+.. ...+++++..-|=-+-+ .....+||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~-~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS-LLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT---------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc-cccccccCcEEEecCcccccccccccCC
Confidence 467899999999999998888874457999999999 99999999876632 23467776664311111 11246899
Q ss_pred EEEEc-CCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 178 VIIGD-LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 178 vIi~D-~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
+|+.. ..- .+ -....+++. +++.|+++|.+++-
T Consensus 122 ~IlasDv~Y----~~---~~~~~L~~t-l~~ll~~~~~vl~~ 155 (173)
T PF10294_consen 122 VILASDVLY----DE---ELFEPLVRT-LKRLLKPNGKVLLA 155 (173)
T ss_dssp EEEEES--S-----G---GGHHHHHHH-HHHHBTT-TTEEEE
T ss_pred EEEEecccc----hH---HHHHHHHHH-HHHHhCCCCEEEEE
Confidence 98864 211 11 123566776 78999998875543
No 192
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=1.9e-05 Score=72.70 Aligned_cols=138 Identities=17% Similarity=0.150 Sum_probs=93.8
Q ss_pred HhhcCCC-CCeEEEEeccchHHHHHHHhcCCC--cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC
Q 025107 96 ALLHHPN-PKTIFIMGGGEGSTAREILRHKTV--EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR 172 (257)
Q Consensus 96 ~l~~~~~-~~~VL~IG~G~G~~~~~l~~~~~~--~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~ 172 (257)
+.++.|+ ..+|||++.+.|+=+.+++..... ..|+++|+++.=++..++++...+ -.++.+++.|++.+....
T Consensus 149 a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG----~~nv~~~~~d~~~~~~~~ 224 (355)
T COG0144 149 ALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG----VRNVIVVNKDARRLAELL 224 (355)
T ss_pred HHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC----CCceEEEecccccccccc
Confidence 4444554 489999999999988777775332 457999999999999999887542 346889999998776553
Q ss_pred C--CceeEEEEcCCCCCC----CCccc------------CCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHH
Q 025107 173 K--ESYDVIIGDLADPIE----GGPCY------------KLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCI 234 (257)
Q Consensus 173 ~--~~fDvIi~D~~~~~~----~~p~~------------~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~ 234 (257)
. ++||.|++|++-... ..|.. .-+..+++.. +.+.|||||+++.-+.+. .++..+..
T Consensus 225 ~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~-a~~~lk~GG~LVYSTCS~----~~eENE~v 299 (355)
T COG0144 225 PGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAA-ALKLLKPGGVLVYSTCSL----TPEENEEV 299 (355)
T ss_pred cccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEccCC----chhcCHHH
Confidence 3 369999999983221 11210 1113577887 789999999998765443 23334455
Q ss_pred HHHHhhhC
Q 025107 235 YNTLRQVF 242 (257)
Q Consensus 235 ~~~l~~~F 242 (257)
.+.+-+..
T Consensus 300 V~~~L~~~ 307 (355)
T COG0144 300 VERFLERH 307 (355)
T ss_pred HHHHHHhC
Confidence 54444333
No 193
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.23 E-value=1.2e-05 Score=72.97 Aligned_cols=121 Identities=23% Similarity=0.117 Sum_probs=87.0
Q ss_pred HHHHHHHHHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEc-chH
Q 025107 88 YHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN-DAR 166 (257)
Q Consensus 88 y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~-Da~ 166 (257)
+.+.|+.++. ..++..|||=-||||+++.++.-. + .++.+.|+|..+++-|+.++..-+ -+...++.. ||.
T Consensus 185 lAR~mVNLa~--v~~G~~vlDPFcGTGgiLiEagl~-G-~~viG~Did~~mv~gak~Nl~~y~----i~~~~~~~~~Da~ 256 (347)
T COG1041 185 LARAMVNLAR--VKRGELVLDPFCGTGGILIEAGLM-G-ARVIGSDIDERMVRGAKINLEYYG----IEDYPVLKVLDAT 256 (347)
T ss_pred HHHHHHHHhc--cccCCEeecCcCCccHHHHhhhhc-C-ceEeecchHHHHHhhhhhhhhhhC----cCceeEEEecccc
Confidence 4455554433 345679999999999999998775 4 699999999999999999997542 245555555 875
Q ss_pred HHHhcCCCceeEEEEcCCCCCCC-Ccc---cCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 167 AELESRKESYDVIIGDLADPIEG-GPC---YKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 167 ~~l~~~~~~fDvIi~D~~~~~~~-~p~---~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
+ +.-.+.++|.|+.|+|-+... ... ..| -.++++. +.++|++||.+++..
T Consensus 257 ~-lpl~~~~vdaIatDPPYGrst~~~~~~l~~L-y~~~le~-~~evLk~gG~~vf~~ 310 (347)
T COG1041 257 N-LPLRDNSVDAIATDPPYGRSTKIKGEGLDEL-YEEALES-ASEVLKPGGRIVFAA 310 (347)
T ss_pred c-CCCCCCccceEEecCCCCcccccccccHHHH-HHHHHHH-HHHHhhcCcEEEEec
Confidence 5 333335699999999843221 111 123 3678888 799999999999864
No 194
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.22 E-value=1.8e-06 Score=71.53 Aligned_cols=126 Identities=18% Similarity=0.262 Sum_probs=72.8
Q ss_pred CCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcch-----HHHHhc----
Q 025107 102 NPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA-----RAELES---- 171 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da-----~~~l~~---- 171 (257)
++.+|||||++.|+.+..++++. ...+|.+||+.+.- - .+.+..+.+|. .+.++.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~------~---------~~~~~~i~~d~~~~~~~~~i~~~~~~ 87 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD------P---------LQNVSFIQGDITNPENIKDIRKLLPE 87 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG------S----------TTEEBTTGGGEEEEHSHHGGGSHGT
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc------c---------ccceeeeecccchhhHHHhhhhhccc
Confidence 56899999999999999999975 35799999998871 0 12223333332 222322
Q ss_pred CCCceeEEEEcCCCCCCCCc------ccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCce
Q 025107 172 RKESYDVIIGDLADPIEGGP------CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCG 245 (257)
Q Consensus 172 ~~~~fDvIi~D~~~~~~~~p------~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v 245 (257)
..+++|+|++|........+ ...| ....+.. +.+.|+|||.+++..- ..... ..++..++..|..+
T Consensus 88 ~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l-~~~~l~~-a~~~L~~gG~~v~K~~-----~~~~~-~~~~~~l~~~F~~v 159 (181)
T PF01728_consen 88 SGEKFDLVLSDMAPNVSGDRNIDEFISIRL-ILSQLLL-ALELLKPGGTFVIKVF-----KGPEI-EELIYLLKRCFSKV 159 (181)
T ss_dssp TTCSESEEEE-------SSHHSSHHHHHHH-HHHHHHH-HHHHHCTTEEEEEEES-----SSTTS-HHHHHHHHHHHHHE
T ss_pred cccCcceeccccccCCCCchhhHHHHHHHH-HHHHHHH-HHhhhcCCCEEEEEec-----cCccH-HHHHHHHHhCCeEE
Confidence 33689999999843221111 0011 1223333 4578999998887642 11222 36777777788777
Q ss_pred EEEee
Q 025107 246 CCALF 250 (257)
Q Consensus 246 ~~~~~ 250 (257)
..+.-
T Consensus 160 ~~~Kp 164 (181)
T PF01728_consen 160 KIVKP 164 (181)
T ss_dssp EEEE-
T ss_pred EEEEC
Confidence 77654
No 195
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.22 E-value=3.3e-06 Score=76.21 Aligned_cols=118 Identities=15% Similarity=0.177 Sum_probs=78.9
Q ss_pred HHHHHHHHHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH
Q 025107 88 YHESLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA 167 (257)
Q Consensus 88 y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~ 167 (257)
|...+.+...+ -+.|.|||+|||+|-++...++. +..+|.+||-+..+ +.|++-+..|+ .+..++++.+...+
T Consensus 48 Yr~~i~~n~~l--f~dK~VlDVGcGtGILS~F~akA-GA~~V~aVe~S~ia-~~a~~iv~~N~---~~~ii~vi~gkvEd 120 (346)
T KOG1499|consen 48 YRNAILQNKHL--FKDKTVLDVGCGTGILSMFAAKA-GARKVYAVEASSIA-DFARKIVKDNG---LEDVITVIKGKVED 120 (346)
T ss_pred HHHHHhcchhh--cCCCEEEEcCCCccHHHHHHHHh-CcceEEEEechHHH-HHHHHHHHhcC---ccceEEEeecceEE
Confidence 55444433332 35789999999999999999996 57899999996554 99998876553 34578999888766
Q ss_pred HHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025107 168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (257)
Q Consensus 168 ~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~ 217 (257)
. .-+.++.|+|++..-.-+..- ..-|-+.-+.+ -+-|+|||++.-
T Consensus 121 i-~LP~eKVDiIvSEWMGy~Ll~-EsMldsVl~AR---dkwL~~~G~i~P 165 (346)
T KOG1499|consen 121 I-ELPVEKVDIIVSEWMGYFLLY-ESMLDSVLYAR---DKWLKEGGLIYP 165 (346)
T ss_pred E-ecCccceeEEeehhhhHHHHH-hhhhhhhhhhh---hhccCCCceEcc
Confidence 5 223489999999864211000 00111222222 478999998863
No 196
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.21 E-value=7.9e-06 Score=73.20 Aligned_cols=77 Identities=23% Similarity=0.176 Sum_probs=63.9
Q ss_pred CCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCC---cee
Q 025107 102 NPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE---SYD 177 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~---~fD 177 (257)
+...+||++||.|+.+..+++.. +..+|+++|.||++++.|++.+.- ..|++++++|..++.....+ ++|
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~------~~ri~~i~~~f~~l~~~l~~~~~~vD 92 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP------FGRFTLVHGNFSNLKEVLAEGLGKVD 92 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc------CCcEEEEeCCHHHHHHHHHcCCCccC
Confidence 34689999999999999999874 357999999999999999987531 25899999999988654333 799
Q ss_pred EEEEcCC
Q 025107 178 VIIGDLA 184 (257)
Q Consensus 178 vIi~D~~ 184 (257)
.|+.|+-
T Consensus 93 gIl~DLG 99 (296)
T PRK00050 93 GILLDLG 99 (296)
T ss_pred EEEECCC
Confidence 9999985
No 197
>PRK10742 putative methyltransferase; Provisional
Probab=98.20 E-value=1.4e-05 Score=69.48 Aligned_cols=81 Identities=17% Similarity=0.133 Sum_probs=67.1
Q ss_pred eEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc--cCCCC---CCCeEEEEcchHHHHhcCCCceeEE
Q 025107 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN--KEAFS---DPRLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 105 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~--~~~~~---~~rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
+|||+-+|.|..+.+++.. + ++|++||-+|.+..+.++.+... ..... ..|++++++|+.+|++...+.||+|
T Consensus 91 ~VLD~TAGlG~Da~~las~-G-~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVV 168 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASV-G-CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (250)
T ss_pred EEEECCCCccHHHHHHHHc-C-CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEE
Confidence 8999999999999999986 4 46999999999999999887632 11111 2589999999999998877789999
Q ss_pred EEcCCCCC
Q 025107 180 IGDLADPI 187 (257)
Q Consensus 180 i~D~~~~~ 187 (257)
++||+-|.
T Consensus 169 YlDPMfp~ 176 (250)
T PRK10742 169 YLDPMFPH 176 (250)
T ss_pred EECCCCCC
Confidence 99997544
No 198
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.19 E-value=1.5e-05 Score=69.49 Aligned_cols=92 Identities=15% Similarity=0.223 Sum_probs=65.2
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~ 181 (257)
..+++||||+|+|.++..+..+. .+|.+-|+++.|....++. ..+++-.| ++ ...+.+||+|.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~rL~~k-----------g~~vl~~~--~w-~~~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRWRLSKK-----------GFTVLDID--DW-QQTDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHHHHHhC-----------CCeEEehh--hh-hccCCceEEEee
Confidence 45789999999999999998864 5899999999997554432 23333333 23 334578999976
Q ss_pred c-CCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025107 182 D-LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (257)
Q Consensus 182 D-~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~ 217 (257)
= .-|-. ..| ...++. +++.|+|+|++++
T Consensus 158 LNvLDRc-~~P------~~LL~~-i~~~l~p~G~lil 186 (265)
T PF05219_consen 158 LNVLDRC-DRP------LTLLRD-IRRALKPNGRLIL 186 (265)
T ss_pred hhhhhcc-CCH------HHHHHH-HHHHhCCCCEEEE
Confidence 3 33322 133 356788 7999999998875
No 199
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.17 E-value=3.2e-06 Score=76.99 Aligned_cols=114 Identities=22% Similarity=0.273 Sum_probs=71.0
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh-hccCCC-----CCCCeEEEEcchHHH-Hhc---
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAF-----SDPRLELVINDARAE-LES--- 171 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~-~~~~~~-----~~~rv~i~~~Da~~~-l~~--- 171 (257)
++.+|||||||-|+-+....+. ++..++++||+++.++.|++... +..... .+=...++.+|+..- +..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 5689999999977755544543 56899999999999999998772 211100 012346788887532 221
Q ss_pred -CCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 172 -RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 172 -~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
...+||+|-+-..-+..-. ..-..+.+++. +...|+|||+++.-+
T Consensus 141 ~~~~~FDvVScQFalHY~Fe--se~~ar~~l~N-vs~~Lk~GG~FIgT~ 186 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFE--SEEKARQFLKN-VSSLLKPGGYFIGTT 186 (331)
T ss_dssp STTS-EEEEEEES-GGGGGS--SHHHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcC--CHHHHHHHHHH-HHHhcCCCCEEEEEe
Confidence 2358999988765332111 12224568898 799999999998653
No 200
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.15 E-value=8.6e-06 Score=71.23 Aligned_cols=76 Identities=20% Similarity=0.318 Sum_probs=62.6
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.++.-||+||.|+|.++..++.. .++|+++|+||.++....+.+.... ...+++++++|. ++..-..||.++
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp---~~~kLqV~~gD~---lK~d~P~fd~cV 128 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTP---KSGKLQVLHGDF---LKTDLPRFDGCV 128 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCC---ccceeeEEeccc---ccCCCcccceee
Confidence 45678999999999999999985 3799999999999998888775331 357999999994 545457899999
Q ss_pred EcCC
Q 025107 181 GDLA 184 (257)
Q Consensus 181 ~D~~ 184 (257)
.+.+
T Consensus 129 sNlP 132 (315)
T KOG0820|consen 129 SNLP 132 (315)
T ss_pred ccCC
Confidence 9876
No 201
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=98.15 E-value=4.2e-06 Score=65.60 Aligned_cols=72 Identities=22% Similarity=0.359 Sum_probs=53.3
Q ss_pred CCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHH
Q 025107 156 PRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY 235 (257)
Q Consensus 156 ~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~ 235 (257)
-+++++.+|+++.++....++|+|+.|+|+|.. .| .+++.++++. ++++++|||++++.+. . ..+.
T Consensus 31 v~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~-nP--elWs~e~~~~-l~~~~~~~~~l~Tys~-------a---~~Vr 96 (124)
T PF05430_consen 31 VTLTLWFGDAREMLPQLDARFDAWYLDGFSPAK-NP--ELWSEELFKK-LARLSKPGGTLATYSS-------A---GAVR 96 (124)
T ss_dssp EEEEEEES-HHHHHHHB-T-EEEEEE-SS-TTT-SG--GGSSHHHHHH-HHHHEEEEEEEEES---------B---HHHH
T ss_pred EEEEEEEcHHHHHHHhCcccCCEEEecCCCCcC-Cc--ccCCHHHHHH-HHHHhCCCcEEEEeec-------h---HHHH
Confidence 355789999999999888999999999998763 44 7999999999 8999999999998542 1 2455
Q ss_pred HHHhhh
Q 025107 236 NTLRQV 241 (257)
Q Consensus 236 ~~l~~~ 241 (257)
+.|.++
T Consensus 97 ~~L~~a 102 (124)
T PF05430_consen 97 RALQQA 102 (124)
T ss_dssp HHHHHC
T ss_pred HHHHHc
Confidence 666665
No 202
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=4e-05 Score=67.11 Aligned_cols=126 Identities=18% Similarity=0.125 Sum_probs=89.5
Q ss_pred CCCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHhcCCCce
Q 025107 100 HPNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESRKESY 176 (257)
Q Consensus 100 ~~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~--~l~~~~~~f 176 (257)
..+...||+-|.|+|+++..+++. .+..++...|....-.+.|++.|...+ -..++++++.|.-. |.. ....+
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg---i~~~vt~~hrDVc~~GF~~-ks~~a 178 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG---IGDNVTVTHRDVCGSGFLI-KSLKA 178 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC---CCcceEEEEeecccCCccc-ccccc
Confidence 345678999999999999999985 455799999999999999999997654 35689999988533 211 24689
Q ss_pred eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhh-hCCceE
Q 025107 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ-VFKCGC 246 (257)
Q Consensus 177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~-~F~~v~ 246 (257)
|.|++|.+.||.+.|. +.++|+.+|..+.++. |+ .+...+....|++ -|-.+.
T Consensus 179 DaVFLDlPaPw~AiPh------------a~~~lk~~g~r~csFS-PC----IEQvqrtce~l~~~gf~~i~ 232 (314)
T KOG2915|consen 179 DAVFLDLPAPWEAIPH------------AAKILKDEGGRLCSFS-PC----IEQVQRTCEALRSLGFIEIE 232 (314)
T ss_pred ceEEEcCCChhhhhhh------------hHHHhhhcCceEEecc-HH----HHHHHHHHHHHHhCCCceEE
Confidence 9999999999876552 3448888886555542 32 2333444445554 354443
No 203
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.10 E-value=2.8e-05 Score=75.04 Aligned_cols=79 Identities=16% Similarity=0.229 Sum_probs=56.9
Q ss_pred CCCeEEEEeccchHHHHHHHhcCC--------CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH----
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKT--------VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL---- 169 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~--------~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l---- 169 (257)
...+|||.|||+|.+...++.+.. ..+++++|+|+..++.++..+.... ....+++.+|.....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~----~~~~~i~~~d~l~~~~~~~ 106 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA----LLEINVINFNSLSYVLLNI 106 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC----CCCceeeeccccccccccc
Confidence 456999999999999887776321 2478999999999999998875432 223566666654322
Q ss_pred hcCCCceeEEEEcCC
Q 025107 170 ESRKESYDVIIGDLA 184 (257)
Q Consensus 170 ~~~~~~fDvIi~D~~ 184 (257)
....++||+|+.+||
T Consensus 107 ~~~~~~fD~IIgNPP 121 (524)
T TIGR02987 107 ESYLDLFDIVITNPP 121 (524)
T ss_pred ccccCcccEEEeCCC
Confidence 112368999999997
No 204
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.08 E-value=1.1e-05 Score=65.81 Aligned_cols=80 Identities=10% Similarity=-0.033 Sum_probs=57.5
Q ss_pred EEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcC
Q 025107 130 VMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL 209 (257)
Q Consensus 130 ~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L 209 (257)
+++|+++++++.|++....... ...++++++.+|+.+. ...++.||+|++...-.+. + -..+++++ ++++|
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~-~~~~~i~~~~~d~~~l-p~~~~~fD~v~~~~~l~~~--~----d~~~~l~e-i~rvL 71 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKAR-SCYKCIEWIEGDAIDL-PFDDCEFDAVTMGYGLRNV--V----DRLRAMKE-MYRVL 71 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccc-cCCCceEEEEechhhC-CCCCCCeeEEEecchhhcC--C----CHHHHHHH-HHHHc
Confidence 5899999999999876543211 0135799999998774 4455789999986432221 1 13578899 79999
Q ss_pred CCCcEEEEe
Q 025107 210 NPEGIFVTQ 218 (257)
Q Consensus 210 ~pgGil~~~ 218 (257)
||||.+++.
T Consensus 72 kpGG~l~i~ 80 (160)
T PLN02232 72 KPGSRVSIL 80 (160)
T ss_pred CcCeEEEEE
Confidence 999998764
No 205
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.07 E-value=8.9e-05 Score=62.04 Aligned_cols=101 Identities=22% Similarity=0.383 Sum_probs=72.8
Q ss_pred CeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcC
Q 025107 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL 183 (257)
Q Consensus 104 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~ 183 (257)
.+++|||.|+|.=+.-++=..+..+++.||-...=+...+.-.... .-++++++++.+.+ .....+||+|++-+
T Consensus 50 ~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L----~L~nv~v~~~R~E~--~~~~~~fd~v~aRA 123 (184)
T PF02527_consen 50 KKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVREL----GLSNVEVINGRAEE--PEYRESFDVVTARA 123 (184)
T ss_dssp SEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHH----T-SSEEEEES-HHH--TTTTT-EEEEEEES
T ss_pred ceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHh----CCCCEEEEEeeecc--cccCCCccEEEeeh
Confidence 3899999999974433333234579999999998887777655422 23589999999888 45568999999988
Q ss_pred CCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCC
Q 025107 184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (257)
Q Consensus 184 ~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~ 221 (257)
..+. ..+++. +...|++||.++..-|.
T Consensus 124 v~~l----------~~l~~~-~~~~l~~~G~~l~~KG~ 150 (184)
T PF02527_consen 124 VAPL----------DKLLEL-ARPLLKPGGRLLAYKGP 150 (184)
T ss_dssp SSSH----------HHHHHH-HGGGEEEEEEEEEEESS
T ss_pred hcCH----------HHHHHH-HHHhcCCCCEEEEEcCC
Confidence 7431 356676 68999999999887653
No 206
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.06 E-value=1.2e-05 Score=71.97 Aligned_cols=115 Identities=16% Similarity=0.166 Sum_probs=77.4
Q ss_pred CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCC--CCCCeEEEEcchHHHH-----hcC
Q 025107 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAF--SDPRLELVINDARAEL-----ESR 172 (257)
Q Consensus 100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~--~~~rv~i~~~Da~~~l-----~~~ 172 (257)
.++...+|++|||-|+-+....+ .++..++++||....|+.|++...-...-. ..=.+.++.+|...-- ...
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~k-AgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~ 193 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDK-AGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK 193 (389)
T ss_pred hccccccceeccCCcccHhHhhh-hcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence 35668899999999998877666 367899999999999999998764221000 0014678889886532 112
Q ss_pred CCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 173 ~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
+.+||+|-+-..-+..-.. .--.+-+++. +.++|+|||+++-.
T Consensus 194 dp~fDivScQF~~HYaFet--ee~ar~~l~N-va~~LkpGG~FIgT 236 (389)
T KOG1975|consen 194 DPRFDIVSCQFAFHYAFET--EESARIALRN-VAKCLKPGGVFIGT 236 (389)
T ss_pred CCCcceeeeeeeEeeeecc--HHHHHHHHHH-HHhhcCCCcEEEEe
Confidence 3459999877543221010 1112457777 78999999999864
No 207
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.06 E-value=5.9e-06 Score=70.71 Aligned_cols=101 Identities=26% Similarity=0.433 Sum_probs=79.0
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCe--EEEEcchHHHHhcCCCceeE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRL--ELVINDARAELESRKESYDV 178 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv--~i~~~Da~~~l~~~~~~fDv 178 (257)
..-+.+++|||+-|.+.+.+.+. ++.+++.+|.+-.+++.++.- +||.+ ...++| .+++.-.+.++|+
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e-~vekli~~DtS~~M~~s~~~~--------qdp~i~~~~~v~D-EE~Ldf~ens~DL 140 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGE-GVEKLIMMDTSYDMIKSCRDA--------QDPSIETSYFVGD-EEFLDFKENSVDL 140 (325)
T ss_pred hhCcceeecccchhhhhHHHHhc-chhheeeeecchHHHHHhhcc--------CCCceEEEEEecc-hhcccccccchhh
Confidence 34567999999999999999985 588999999999999999864 34554 445666 5677767789999
Q ss_pred EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
|++...-+|.- +| +..+.. ++..|||+|.++..
T Consensus 141 iisSlslHW~N----dL--Pg~m~~-ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 141 IISSLSLHWTN----DL--PGSMIQ-CKLALKPDGLFIAS 173 (325)
T ss_pred hhhhhhhhhhc----cC--chHHHH-HHHhcCCCccchhH
Confidence 99998877731 22 345667 59999999999854
No 208
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.06 E-value=4e-05 Score=68.97 Aligned_cols=103 Identities=19% Similarity=0.306 Sum_probs=76.3
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~ 181 (257)
..+-||++|||+|.+...++.. +.++|.+||-+ ++.+.||+...-+ .-..|+.++.+-..+. +.+++.|+||+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS-~MAqyA~~Lv~~N---~~~~rItVI~GKiEdi--eLPEk~DviIS 249 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEAS-EMAQYARKLVASN---NLADRITVIPGKIEDI--ELPEKVDVIIS 249 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh-CcceEEEEehh-HHHHHHHHHHhcC---CccceEEEccCccccc--cCchhccEEEe
Confidence 4678999999999999888874 67899999984 5778888876543 2457999998875443 45689999999
Q ss_pred cCCCCCCCCcccCCchH---HHHHHHHcCcCCCCcEEEEec
Q 025107 182 DLADPIEGGPCYKLYTK---SFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 182 D~~~~~~~~p~~~L~t~---ef~~~~~~~~L~pgGil~~~~ 219 (257)
.+-. .-|++. |-|-. +++-|+|+|.+.-..
T Consensus 250 EPMG-------~mL~NERMLEsYl~-Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 250 EPMG-------YMLVNERMLESYLH-ARKWLKPNGKMFPTV 282 (517)
T ss_pred ccch-------hhhhhHHHHHHHHH-HHhhcCCCCcccCcc
Confidence 8642 124433 44554 589999999887443
No 209
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.03 E-value=6.7e-06 Score=73.92 Aligned_cols=114 Identities=17% Similarity=0.180 Sum_probs=71.2
Q ss_pred CCCeEEEEeccchHHHHHHHhc-------CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-C
Q 025107 102 NPKTIFIMGGGEGSTAREILRH-------KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-K 173 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~-------~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-~ 173 (257)
+..+|||-.||+|+++.++.++ ....++.++|+|+..+.+|+-++.+.+. ......+..+|....-... .
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~--~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI--DNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH--HCBGCEEEES-TTTSHSCTST
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc--ccccccccccccccccccccc
Confidence 4457999999999998887763 1346899999999999999987654421 1234568888875543322 4
Q ss_pred CceeEEEEcCCCCCC--CCc---ccC----------CchHHHHHHHHcCcCCCCcEEEEe
Q 025107 174 ESYDVIIGDLADPIE--GGP---CYK----------LYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 174 ~~fDvIi~D~~~~~~--~~p---~~~----------L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
.+||+|+++||-... ..+ ... -...-|++. +.+.|+++|.+++-
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~-~l~~Lk~~G~~~~I 182 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEH-ALSLLKPGGRAAII 182 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHH-HHHTEEEEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHH-HHhhcccccceeEE
Confidence 789999999973211 000 000 011247788 68899999976653
No 210
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.00 E-value=4.1e-05 Score=67.84 Aligned_cols=108 Identities=18% Similarity=0.282 Sum_probs=64.0
Q ss_pred CCCeEEEEeccchHHHH-HHHh-cCCCcEEEEEECCHHHHHHHHhhhh-hccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025107 102 NPKTIFIMGGGEGSTAR-EILR-HKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFSDPRLELVINDARAELESRKESYDV 178 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~-~l~~-~~~~~~v~~VEid~~vi~~a~~~~~-~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv 178 (257)
.|++|+.||+|.==++. .+++ +.....|+.+|+||+.++.+++-.. ..+ -..+.+++.+|+.+.-. .-..||+
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~---L~~~m~f~~~d~~~~~~-dl~~~Dv 195 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG---LSKRMSFITADVLDVTY-DLKEYDV 195 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H---H-SSEEEEES-GGGG-G-G----SE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc---ccCCeEEEecchhcccc-ccccCCE
Confidence 46899999999655444 4443 3334689999999999999998765 222 25789999999876432 2368999
Q ss_pred EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
|++.+.-+....+ -.+.++. +.+.++||.++++..
T Consensus 196 V~lAalVg~~~e~-----K~~Il~~-l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 196 VFLAALVGMDAEP-----KEEILEH-LAKHMAPGARLVVRS 230 (276)
T ss_dssp EEE-TT-S----S-----HHHHHHH-HHHHS-TTSEEEEEE
T ss_pred EEEhhhcccccch-----HHHHHHH-HHhhCCCCcEEEEec
Confidence 9998864322223 3578888 799999999999874
No 211
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.99 E-value=5.8e-05 Score=75.41 Aligned_cols=81 Identities=14% Similarity=0.083 Sum_probs=63.2
Q ss_pred CCCeEEEEeccchHHHHHHHhc-----C-------------------------------------CCcEEEEEECCHHHH
Q 025107 102 NPKTIFIMGGGEGSTAREILRH-----K-------------------------------------TVEKVVMCDIDEEVV 139 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~-----~-------------------------------------~~~~v~~VEid~~vi 139 (257)
....++|-+||+|+++.+++.. | ...+++++|+|+.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 3578999999999999887642 0 113699999999999
Q ss_pred HHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-CCceeEEEEcCCC
Q 025107 140 EFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDLAD 185 (257)
Q Consensus 140 ~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-~~~fDvIi~D~~~ 185 (257)
+.|+++....+ ...+++++.+|+.+.-... .++||+|++|||-
T Consensus 270 ~~A~~N~~~~g---~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPY 313 (702)
T PRK11783 270 QAARKNARRAG---VAELITFEVKDVADLKNPLPKGPTGLVISNPPY 313 (702)
T ss_pred HHHHHHHHHcC---CCcceEEEeCChhhcccccccCCCCEEEECCCC
Confidence 99999987654 2457999999998864322 2579999999874
No 212
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.99 E-value=0.00011 Score=62.88 Aligned_cols=132 Identities=20% Similarity=0.245 Sum_probs=87.5
Q ss_pred CCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHH----HHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC--CC
Q 025107 102 NPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEV----VEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KE 174 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~v----i~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~--~~ 174 (257)
+..+||-||.++|++..+++.. .+...|.+||.+|.. +.+|++ .+|+-=+.+||+.--+-. -+
T Consensus 73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~----------R~NIiPIl~DAr~P~~Y~~lv~ 142 (229)
T PF01269_consen 73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK----------RPNIIPILEDARHPEKYRMLVE 142 (229)
T ss_dssp TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH----------STTEEEEES-TTSGGGGTTTS-
T ss_pred CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc----------CCceeeeeccCCChHHhhcccc
Confidence 4579999999999999998885 235699999999955 445554 367777899998755432 36
Q ss_pred ceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe--cCCCCC-CCChHHHHHHHHHHhhh-CCceEEEee
Q 025107 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ--AGPAGI-FSHTEVFSCIYNTLRQV-FKCGCCALF 250 (257)
Q Consensus 175 ~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~--~~~~~~-~~~~~~~~~~~~~l~~~-F~~v~~~~~ 250 (257)
..|+|+.|...|. ..+-+... ++.-||+||.+++- ..+-++ ......+.+..+.|++. |.-......
T Consensus 143 ~VDvI~~DVaQp~--------Qa~I~~~N-a~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~L 213 (229)
T PF01269_consen 143 MVDVIFQDVAQPD--------QARIAALN-ARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITL 213 (229)
T ss_dssp -EEEEEEE-SSTT--------HHHHHHHH-HHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-
T ss_pred cccEEEecCCChH--------HHHHHHHH-HHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEecc
Confidence 8999999987543 13345555 67799999977653 211111 12356888888999974 766555555
Q ss_pred cC
Q 025107 251 SS 252 (257)
Q Consensus 251 ~~ 252 (257)
++
T Consensus 214 eP 215 (229)
T PF01269_consen 214 EP 215 (229)
T ss_dssp TT
T ss_pred CC
Confidence 44
No 213
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.96 E-value=2.8e-05 Score=72.02 Aligned_cols=104 Identities=29% Similarity=0.346 Sum_probs=78.1
Q ss_pred CCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025107 103 PKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (257)
Q Consensus 103 ~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~ 181 (257)
+-++||.=+|+|.=+...++. ++..+|++-|+||+.++..++++.+++- .+.++++.+.||...+....++||+|=+
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~--~~~~~~v~~~DAn~ll~~~~~~fD~IDl 127 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGL--EDERIEVSNMDANVLLYSRQERFDVIDL 127 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT---SGCCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccc--cCceEEEehhhHHHHhhhccccCCEEEe
Confidence 458999888999866555554 6678999999999999999999988752 2338999999999999766789999999
Q ss_pred cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
|+|. .| ..|+.. +-+.++.||++.+.+
T Consensus 128 DPfG----Sp------~pflds-A~~~v~~gGll~vTa 154 (377)
T PF02005_consen 128 DPFG----SP------APFLDS-ALQAVKDGGLLCVTA 154 (377)
T ss_dssp --SS------------HHHHHH-HHHHEEEEEEEEEEE
T ss_pred CCCC----Cc------cHhHHH-HHHHhhcCCEEEEec
Confidence 9984 23 367787 678999999998754
No 214
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=1.5e-05 Score=63.58 Aligned_cols=92 Identities=17% Similarity=0.081 Sum_probs=63.4
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
-+++++++||||.|.+...... ++...|.++||||+.+++++++..-.. -++.+...|..+.. ...+.||..+
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeEfE-----vqidlLqcdildle-~~~g~fDtav 119 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEEFE-----VQIDLLQCDILDLE-LKGGIFDTAV 119 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHHhh-----hhhheeeeeccchh-ccCCeEeeEE
Confidence 3679999999999999866555 566899999999999999999865321 12245555533322 2348899999
Q ss_pred EcCCCCCCCCcccCCchHHHHHH
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEF 203 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~ 203 (257)
+|++-+.. ..-..-+|...
T Consensus 120 iNppFGTk----~~~aDm~fv~~ 138 (185)
T KOG3420|consen 120 INPPFGTK----KKGADMEFVSA 138 (185)
T ss_pred ecCCCCcc----cccccHHHHHH
Confidence 99875331 12234566665
No 215
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.93 E-value=2.4e-05 Score=68.97 Aligned_cols=75 Identities=24% Similarity=0.428 Sum_probs=60.8
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC--CCceeEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYDVI 179 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~--~~~fDvI 179 (257)
+...||+||.|.|.++++++++. .++++||+|+...+..++.+. .+++++++.+|+.++-... ..+...|
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~------~~~~~~vi~~D~l~~~~~~~~~~~~~~v 101 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA------SNPNVEVINGDFLKWDLYDLLKNQPLLV 101 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT------TCSSEEEEES-TTTSCGGGHCSSSEEEE
T ss_pred CCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh------hcccceeeecchhccccHHhhcCCceEE
Confidence 56899999999999999999975 799999999999999998765 3589999999998763222 2356688
Q ss_pred EEcCC
Q 025107 180 IGDLA 184 (257)
Q Consensus 180 i~D~~ 184 (257)
+.+.+
T Consensus 102 v~NlP 106 (262)
T PF00398_consen 102 VGNLP 106 (262)
T ss_dssp EEEET
T ss_pred EEEec
Confidence 88765
No 216
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.90 E-value=1.3e-05 Score=66.72 Aligned_cols=101 Identities=24% Similarity=0.231 Sum_probs=75.9
Q ss_pred CeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcC
Q 025107 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL 183 (257)
Q Consensus 104 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~ 183 (257)
.-+.++|.|+|-++..+++. ..+|.++|.||...+.|++++..++ +.+++++.+||+.|=- +.-|+|++..
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g----~~n~evv~gDA~~y~f---e~ADvvicEm 104 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPG----DVNWEVVVGDARDYDF---ENADVVICEM 104 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCC----CcceEEEecccccccc---cccceeHHHH
Confidence 57999999999999887775 5799999999999999999987763 6799999999998832 5679999876
Q ss_pred CCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 184 ~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
-|..... .. ....+.. +.+-|+.++.++-+
T Consensus 105 lDTaLi~--E~--qVpV~n~-vleFLr~d~tiiPq 134 (252)
T COG4076 105 LDTALIE--EK--QVPVINA-VLEFLRYDPTIIPQ 134 (252)
T ss_pred hhHHhhc--cc--ccHHHHH-HHHHhhcCCccccH
Confidence 6421100 00 1244555 45577888877743
No 217
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=8.4e-05 Score=62.93 Aligned_cols=127 Identities=20% Similarity=0.236 Sum_probs=83.6
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH-----HHhc-C-
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKT-VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-----ELES-R- 172 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~-----~l~~-~- 172 (257)
.+...|+|||+.-|+.++.+++..+ ...|++||++|.- .-+.|.++.+|.+. -+.. .
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~---------------~~~~V~~iq~d~~~~~~~~~l~~~l~ 108 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK---------------PIPGVIFLQGDITDEDTLEKLLEALG 108 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc---------------cCCCceEEeeeccCccHHHHHHHHcC
Confidence 4568999999999999999888633 2359999998754 23457777776533 2322 2
Q ss_pred CCceeEEEEcCCCCCCCCc-ccCCch----HHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEE
Q 025107 173 KESYDVIIGDLADPIEGGP-CYKLYT----KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCC 247 (257)
Q Consensus 173 ~~~fDvIi~D~~~~~~~~p-~~~L~t----~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~ 247 (257)
..+.|+|++|+........ ..+..+ .-.+.. +.+.|+|+|.+++.. .+.+....+++.+++.|..|..
T Consensus 109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~-a~~vL~~~G~fv~K~------fqg~~~~~~l~~~~~~F~~v~~ 181 (205)
T COG0293 109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEF-ALEVLKPGGSFVAKV------FQGEDFEDLLKALRRLFRKVKI 181 (205)
T ss_pred CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHH-HHHeeCCCCeEEEEE------EeCCCHHHHHHHHHHhhceeEE
Confidence 2457999999874322111 011111 123333 468999999999753 2334467888999999998886
Q ss_pred Ee
Q 025107 248 AL 249 (257)
Q Consensus 248 ~~ 249 (257)
..
T Consensus 182 ~K 183 (205)
T COG0293 182 FK 183 (205)
T ss_pred ec
Confidence 54
No 218
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.85 E-value=9.4e-05 Score=63.97 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=34.6
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHH
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEF 141 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ 141 (257)
.+.+.|||+|||+|.++..+++. +..+|++||+++.++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence 35678999999999999999996 56799999999976654
No 219
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=0.00012 Score=66.70 Aligned_cols=102 Identities=25% Similarity=0.315 Sum_probs=82.6
Q ss_pred CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025107 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (257)
Q Consensus 103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D 182 (257)
+++|||-=+|+|.=+...+...+..+|++-||+|+.+++.++++..|. .....+++.||-..+.+....||+|=+|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~----~~~~~v~n~DAN~lm~~~~~~fd~IDiD 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS----GEDAEVINKDANALLHELHRAFDVIDID 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC----cccceeecchHHHHHHhcCCCccEEecC
Confidence 889999999999977665554444489999999999999999998772 3455667799999999878999999999
Q ss_pred CCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
+|. .| ..|+.. +.+.++.+|++.+..
T Consensus 129 PFG----SP------aPFlDa-A~~s~~~~G~l~vTA 154 (380)
T COG1867 129 PFG----SP------APFLDA-ALRSVRRGGLLCVTA 154 (380)
T ss_pred CCC----CC------chHHHH-HHHHhhcCCEEEEEe
Confidence 984 23 256777 678888899998764
No 220
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.80 E-value=0.00014 Score=64.98 Aligned_cols=137 Identities=14% Similarity=0.071 Sum_probs=94.0
Q ss_pred CCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-CCceeEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVI 179 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-~~~fDvI 179 (257)
+..+|||++++.|+=+..++... ....|+++|+++.=+...++++...+ ..++.+...|++++.... ...||.|
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g----~~~v~~~~~D~~~~~~~~~~~~fd~V 160 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG----VFNVIVINADARKLDPKKPESKFDRV 160 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-----SSEEEEESHHHHHHHHHHTTTEEEE
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC----CceEEEEeeccccccccccccccchh
Confidence 45789999999999877777753 24699999999999999998876442 457888889999986543 3469999
Q ss_pred EEcCCCCCC----CCccc------------CCchHHHHHHHHcCcC----CCCcEEEEecCCCCCCCChHHHHHHHHHHh
Q 025107 180 IGDLADPIE----GGPCY------------KLYTKSFYEFVVKPRL----NPEGIFVTQAGPAGIFSHTEVFSCIYNTLR 239 (257)
Q Consensus 180 i~D~~~~~~----~~p~~------------~L~t~ef~~~~~~~~L----~pgGil~~~~~~~~~~~~~~~~~~~~~~l~ 239 (257)
++|++-... ..|.. .-...+.++. +.+.+ +|||+++--+.+- . ++..+..++.+-
T Consensus 161 lvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~~~~~~k~gG~lvYsTCS~---~-~eENE~vV~~fl 235 (283)
T PF01189_consen 161 LVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDN-AAKLLNIDFKPGGRLVYSTCSL---S-PEENEEVVEKFL 235 (283)
T ss_dssp EEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHH-HHHCEHHHBEEEEEEEEEESHH---H-GGGTHHHHHHHH
T ss_pred hcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHH-HHHhhcccccCCCeEEEEeccH---H-HHHHHHHHHHHH
Confidence 999983221 12210 0113577777 68899 9999998655332 2 333445555554
Q ss_pred hhCCceEE
Q 025107 240 QVFKCGCC 247 (257)
Q Consensus 240 ~~F~~v~~ 247 (257)
+.+|....
T Consensus 236 ~~~~~~~l 243 (283)
T PF01189_consen 236 KRHPDFEL 243 (283)
T ss_dssp HHSTSEEE
T ss_pred HhCCCcEE
Confidence 45665543
No 221
>PRK04148 hypothetical protein; Provisional
Probab=97.79 E-value=6.7e-05 Score=59.46 Aligned_cols=71 Identities=21% Similarity=0.164 Sum_probs=51.9
Q ss_pred CCCCeEEEEeccchH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025107 101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
.+++++|+||+|.|. ++..+.+. + .+|+++|++|..++.+++. .++++.+|.++-=-+.-+.+|+|
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~-G-~~ViaIDi~~~aV~~a~~~-----------~~~~v~dDlf~p~~~~y~~a~li 81 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKES-G-FDVIVIDINEKAVEKAKKL-----------GLNAFVDDLFNPNLEIYKNAKLI 81 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHh-----------CCeEEECcCCCCCHHHHhcCCEE
Confidence 346789999999996 77777764 4 5999999999999988764 35677777654322223678999
Q ss_pred EEcCC
Q 025107 180 IGDLA 184 (257)
Q Consensus 180 i~D~~ 184 (257)
..--+
T Consensus 82 ysirp 86 (134)
T PRK04148 82 YSIRP 86 (134)
T ss_pred EEeCC
Confidence 87533
No 222
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.74 E-value=0.00043 Score=59.90 Aligned_cols=103 Identities=22% Similarity=0.246 Sum_probs=58.5
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCceeEEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII 180 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fDvIi 180 (257)
..|+||.||=.+-.....++...+ ++|+++|||+.+++..++.....+ -+++.++.|.|+-+.. -.++||+++
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~-~~I~VvDiDeRll~fI~~~a~~~g-----l~i~~~~~DlR~~LP~~~~~~fD~f~ 117 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLP-KRITVVDIDERLLDFINRVAEEEG-----LPIEAVHYDLRDPLPEELRGKFDVFF 117 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT---SEEEEE-S-HHHHHHHHHHHHHHT-------EEEE---TTS---TTTSS-BSEEE
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCC-CeEEEEEcCHHHHHHHHHHHHHcC-----CceEEEEecccccCCHHHhcCCCEEE
Confidence 579999999888776555554443 799999999999999998876432 2499999999998865 358999999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCc-EEEEe
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG-IFVTQ 218 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgG-il~~~ 218 (257)
.||+.. +.. -.-|+.. .-+.|+..| ...+.
T Consensus 118 TDPPyT----~~G---~~LFlsR-gi~~Lk~~g~~gy~~ 148 (243)
T PF01861_consen 118 TDPPYT----PEG---LKLFLSR-GIEALKGEGCAGYFG 148 (243)
T ss_dssp E---SS----HHH---HHHHHHH-HHHTB-STT-EEEEE
T ss_pred eCCCCC----HHH---HHHHHHH-HHHHhCCCCceEEEE
Confidence 998731 110 1235555 456777766 43333
No 223
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.0012 Score=55.69 Aligned_cols=137 Identities=17% Similarity=0.207 Sum_probs=89.9
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CCCceeE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDV 178 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~~~fDv 178 (257)
.+..+||-||..+|++..++..-.+...|.+||.+|++.+-.- .... ..+|+-=+.+||+.--+- .-+..|+
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl---~~a~---~R~Ni~PIL~DA~~P~~Y~~~Ve~VDv 148 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELL---DVAE---KRPNIIPILEDARKPEKYRHLVEKVDV 148 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHH---HHHH---hCCCceeeecccCCcHHhhhhcccccE
Confidence 4568999999999999999998766678999999998754322 2111 235666677888653221 2367999
Q ss_pred EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCc--EEEEecCCCCCC-CChHHHHHHHHHHhhh-CCceEEEeecC
Q 025107 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEG--IFVTQAGPAGIF-SHTEVFSCIYNTLRQV-FKCGCCALFSS 252 (257)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgG--il~~~~~~~~~~-~~~~~~~~~~~~l~~~-F~~v~~~~~~~ 252 (257)
|+.|...|.. +.-+... +..-|+++| ++++...+-.+- ...+.+++..+.|++. |.-......++
T Consensus 149 iy~DVAQp~Q--------a~I~~~N-a~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~LeP 217 (231)
T COG1889 149 IYQDVAQPNQ--------AEILADN-AEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLEP 217 (231)
T ss_pred EEEecCCchH--------HHHHHHH-HHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEeccCC
Confidence 9999876541 2334455 688999999 555554332211 2345777777777765 55554444433
No 224
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.62 E-value=0.00077 Score=59.87 Aligned_cols=128 Identities=16% Similarity=0.197 Sum_probs=85.9
Q ss_pred CCCCCeEEEEeccchHHHHHHHhcCC--CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--HhcCCCc
Q 025107 100 HPNPKTIFIMGGGEGSTAREILRHKT--VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKES 175 (257)
Q Consensus 100 ~~~~~~VL~IG~G~G~~~~~l~~~~~--~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~--l~~~~~~ 175 (257)
...|-+||+|.||.|-....++...+ ..+|...|.+|.-++..++...-.+ -..-+++..+||++. +.....+
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g---L~~i~~f~~~dAfd~~~l~~l~p~ 209 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG---LEDIARFEQGDAFDRDSLAALDPA 209 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC---CccceEEEecCCCCHhHhhccCCC
Confidence 45788999999999998887776433 3689999999999999998876432 233559999999886 4444567
Q ss_pred eeEEEEcC-CCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhh
Q 025107 176 YDVIIGDL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (257)
Q Consensus 176 fDvIi~D~-~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (257)
.+++++.- ++-. |...+. ..-+.- +.++|.|||.++. ++.| |+ + .++-|.+.|..
T Consensus 210 P~l~iVsGL~ElF---~Dn~lv-~~sl~g-l~~al~pgG~lIy-TgQP--wH-P-Qle~IAr~Lts 265 (311)
T PF12147_consen 210 PTLAIVSGLYELF---PDNDLV-RRSLAG-LARALEPGGYLIY-TGQP--WH-P-QLEMIARVLTS 265 (311)
T ss_pred CCEEEEecchhhC---CcHHHH-HHHHHH-HHHHhCCCcEEEE-cCCC--CC-c-chHHHHHHHhc
Confidence 88877653 3211 111222 234555 6889999998874 4555 43 2 23444455543
No 225
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.58 E-value=0.00053 Score=62.36 Aligned_cols=71 Identities=13% Similarity=0.153 Sum_probs=56.7
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.+.+++||||++.|+.+..+++. + .+|++||..+..-.+ ..+++|+.+.+|+..+... .+.+|+++
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r-G-~~V~AVD~g~l~~~L-----------~~~~~V~h~~~d~fr~~p~-~~~vDwvV 275 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR-G-MFVTAVDNGPMAQSL-----------MDTGQVEHLRADGFKFRPP-RKNVDWLV 275 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc-C-CEEEEEechhcCHhh-----------hCCCCEEEEeccCcccCCC-CCCCCEEE
Confidence 35689999999999999999996 4 499999965422111 2579999999999998643 57899999
Q ss_pred EcCCC
Q 025107 181 GDLAD 185 (257)
Q Consensus 181 ~D~~~ 185 (257)
+|...
T Consensus 276 cDmve 280 (357)
T PRK11760 276 CDMVE 280 (357)
T ss_pred Eeccc
Confidence 99874
No 226
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.57 E-value=0.00067 Score=57.34 Aligned_cols=111 Identities=14% Similarity=0.144 Sum_probs=61.7
Q ss_pred CCCeEEEEeccchHH----HHHHHh---c-CC-CcEEEEEECCHHHHHHHHhh------------------h-hhccCCC
Q 025107 102 NPKTIFIMGGGEGST----AREILR---H-KT-VEKVVMCDIDEEVVEFCKSY------------------L-VVNKEAF 153 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~----~~~l~~---~-~~-~~~v~~VEid~~vi~~a~~~------------------~-~~~~~~~ 153 (257)
++-+|+-.||++|-= +..+.. . .+ .-+|.+.|||+.+++.|++- | ...++.+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 467999999999973 222222 1 11 24899999999999999972 2 1111111
Q ss_pred -----CCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 154 -----SDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 154 -----~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
-..++++..-|..+ .....++||+|++--.--. ..+ -.....++. +.+.|+|||.|++-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIY-F~~---~~~~~vl~~-l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIY-FDP---ETQQRVLRR-LHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGG-S-H---HHHHHHHHH-HGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEE-eCH---HHHHHHHHH-HHHHcCCCCEEEEe
Confidence 01577888888776 2233578999998632100 011 113567787 79999999999974
No 227
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.50 E-value=0.00025 Score=64.23 Aligned_cols=96 Identities=20% Similarity=0.236 Sum_probs=72.2
Q ss_pred CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025107 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (257)
Q Consensus 103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D 182 (257)
-+..+|+|+|.|.+++.++.+++ +|.+++.|..-+..++.++. |.++.+.+|+++- ..+-|+|++-
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~--------~gV~~v~gdmfq~----~P~~daI~mk 243 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA--------PGVEHVAGDMFQD----TPKGDAIWMK 243 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc--------CCcceeccccccc----CCCcCeEEEE
Confidence 47899999999999999999764 69999999888887777653 2478888997664 2445799887
Q ss_pred CC-CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 183 LA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 183 ~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
.- .+|.+.- -..|++. +++.|+|+|.+++-
T Consensus 244 WiLhdwtDed-----cvkiLkn-C~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 244 WILHDWTDED-----CVKILKN-CKKSLPPGGKIIVV 274 (342)
T ss_pred eecccCChHH-----HHHHHHH-HHHhCCCCCEEEEE
Confidence 54 2332221 2589999 59999999987764
No 228
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.49 E-value=0.0019 Score=59.48 Aligned_cols=110 Identities=22% Similarity=0.162 Sum_probs=81.0
Q ss_pred CCeEEEEeccchHHHHHHHhcCC-----C---------------------------c-------EEEEEECCHHHHHHHH
Q 025107 103 PKTIFIMGGGEGSTAREILRHKT-----V---------------------------E-------KVVMCDIDEEVVEFCK 143 (257)
Q Consensus 103 ~~~VL~IG~G~G~~~~~l~~~~~-----~---------------------------~-------~v~~VEid~~vi~~a~ 143 (257)
.+.++|-=||+|+++.+++.... . + .+.++|+|+.+++.|+
T Consensus 192 ~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak 271 (381)
T COG0116 192 DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK 271 (381)
T ss_pred CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH
Confidence 36899999999999988876421 0 1 3779999999999999
Q ss_pred hhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcc---cCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 144 SYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPC---YKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 144 ~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~---~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
.+....+ ....+++..+|+..+-.. .+.+|+||+|||-+...+.. ..|| ++|.+. +++.++--+.+++-
T Consensus 272 ~NA~~AG---v~d~I~f~~~d~~~l~~~-~~~~gvvI~NPPYGeRlg~~~~v~~LY-~~fg~~-lk~~~~~ws~~v~t 343 (381)
T COG0116 272 ANARAAG---VGDLIEFKQADATDLKEP-LEEYGVVISNPPYGERLGSEALVAKLY-REFGRT-LKRLLAGWSRYVFT 343 (381)
T ss_pred HHHHhcC---CCceEEEEEcchhhCCCC-CCcCCEEEeCCCcchhcCChhhHHHHH-HHHHHH-HHHHhcCCceEEEE
Confidence 9986543 457899999998776332 27899999999844322211 1244 467777 68888887777764
No 229
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.48 E-value=0.0004 Score=61.42 Aligned_cols=111 Identities=19% Similarity=0.190 Sum_probs=77.8
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh---ccC---------------------------
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV---NKE--------------------------- 151 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~---~~~--------------------------- 151 (257)
.+.+||+-|||.|.++.++++. + -.+.+.|.+--|+-..+--+.. .+.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~-G-~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL-G-YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc-c-ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 3579999999999999999997 4 4899999998885443321110 000
Q ss_pred ------CCCCCCeEEEEcchHHHHhcC--CCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCC
Q 025107 152 ------AFSDPRLELVINDARAELESR--KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (257)
Q Consensus 152 ------~~~~~rv~i~~~Da~~~l~~~--~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~ 222 (257)
.....++++..||..++-... .++||+|+..-|-.. . ..+ .++++. ++++|||||+ .+|.||-
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT--A--~Ni--~~Yi~t-I~~lLkpgG~-WIN~GPL 204 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT--A--ENI--IEYIET-IEHLLKPGGY-WINFGPL 204 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec--h--HHH--HHHHHH-HHHHhccCCE-EEecCCc
Confidence 012357889999988876554 478999998765211 1 122 488888 7999999995 4588754
No 230
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.46 E-value=0.00032 Score=59.82 Aligned_cols=78 Identities=18% Similarity=0.153 Sum_probs=59.2
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC---CCceeE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR---KESYDV 178 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~---~~~fDv 178 (257)
.+..|+|.-||.|+.+.+.+... ..|.++|+||.-+..||++++.-+ -..|++++.||..+..+.. ...+|+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~--~~VisIdiDPikIa~AkhNaeiYG---I~~rItFI~GD~ld~~~~lq~~K~~~~~ 168 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG--PYVIAIDIDPVKIACARHNAEVYG---VPDRITFICGDFLDLASKLKADKIKYDC 168 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC--CeEEEEeccHHHHHHHhccceeec---CCceeEEEechHHHHHHHHhhhhheeee
Confidence 56678887777777666655543 479999999999999999987543 2349999999998876543 355888
Q ss_pred EEEcCC
Q 025107 179 IIGDLA 184 (257)
Q Consensus 179 Ii~D~~ 184 (257)
|+..++
T Consensus 169 vf~spp 174 (263)
T KOG2730|consen 169 VFLSPP 174 (263)
T ss_pred eecCCC
Confidence 887765
No 231
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.39 E-value=0.0013 Score=55.73 Aligned_cols=134 Identities=16% Similarity=0.116 Sum_probs=81.6
Q ss_pred eEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcch-HHHHh---cCCCceeEEE
Q 025107 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA-RAELE---SRKESYDVII 180 (257)
Q Consensus 105 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da-~~~l~---~~~~~fDvIi 180 (257)
+||+||+|+|--+.+++++.+..+-.--|.++....-.+.+....+...-.+-+.+=..+. ..+.. ...+.||.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 5999999999999999987665566677999988766666653221100112233322221 22211 1346899999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCC--CCCCChHHHHHHHHHHhhhCCc
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA--GIFSHTEVFSCIYNTLRQVFKC 244 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~--~~~~~~~~~~~~~~~l~~~F~~ 244 (257)
+--.-+. .| + -.+..+|+. +.+.|++||++++..--. + ....+...++-..||+.-|.
T Consensus 108 ~~N~lHI--~p-~-~~~~~lf~~-a~~~L~~gG~L~~YGPF~~~G-~~ts~SN~~FD~sLr~rdp~ 167 (204)
T PF06080_consen 108 CINMLHI--SP-W-SAVEGLFAG-AARLLKPGGLLFLYGPFNRDG-KFTSESNAAFDASLRSRDPE 167 (204)
T ss_pred ehhHHHh--cC-H-HHHHHHHHH-HHHhCCCCCEEEEeCCcccCC-EeCCcHHHHHHHHHhcCCCC
Confidence 8654332 22 1 124678888 799999999999864100 0 11345566666777766543
No 232
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.38 E-value=0.0019 Score=55.02 Aligned_cols=100 Identities=18% Similarity=0.193 Sum_probs=71.6
Q ss_pred EEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC
Q 025107 106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD 185 (257)
Q Consensus 106 VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~ 185 (257)
|.||||--|.++.+|++.....+++++|+++.-++.|+++....+ ...+++++.+|+.+-+.. .+..|.|++..-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~---l~~~i~~rlgdGL~~l~~-~e~~d~ivIAGMG 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYG---LEDRIEVRLGDGLEVLKP-GEDVDTIVIAGMG 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT----TTTEEEEE-SGGGG--G-GG---EEEEEEE-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CcccEEEEECCcccccCC-CCCCCEEEEecCC
Confidence 689999999999999998767789999999999999999987543 356999999999998754 2336998886331
Q ss_pred CCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 186 PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 186 ~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
-....++++. ....++..-.++++
T Consensus 77 --------G~lI~~ILe~-~~~~~~~~~~lILq 100 (205)
T PF04816_consen 77 --------GELIIEILEA-GPEKLSSAKRLILQ 100 (205)
T ss_dssp --------HHHHHHHHHH-TGGGGTT--EEEEE
T ss_pred --------HHHHHHHHHh-hHHHhccCCeEEEe
Confidence 1235677777 56777766678886
No 233
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.38 E-value=0.00033 Score=66.01 Aligned_cols=105 Identities=17% Similarity=0.197 Sum_probs=84.2
Q ss_pred CCCCeEEEEeccchHHHHHHHh-cCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCC---Cce
Q 025107 101 PNPKTIFIMGGGEGSTAREILR-HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK---ESY 176 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~---~~f 176 (257)
.++-+||+.=+++|.-+...++ .+++.+|++-|.+++.++..+++..++. .+..++..++||...+-... ..|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~---v~~ive~~~~DA~~lM~~~~~~~~~F 184 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG---VEDIVEPHHSDANVLMYEHPMVAKFF 184 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC---chhhcccccchHHHHHHhcccccccc
Confidence 4567899977778876544444 5778899999999999999999998774 46788999999998876655 889
Q ss_pred eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
|+|=+|++. .| ..|+.. +-+.++.||++++-+
T Consensus 185 DvIDLDPyG----s~------s~FLDs-Avqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 185 DVIDLDPYG----SP------SPFLDS-AVQAVRDGGLLCVTC 216 (525)
T ss_pred ceEecCCCC----Cc------cHHHHH-HHHHhhcCCEEEEEe
Confidence 999999984 22 257777 788999999998754
No 234
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.35 E-value=0.0018 Score=55.05 Aligned_cols=108 Identities=16% Similarity=0.169 Sum_probs=60.4
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh-c----cCCCCCCCeEEEEcchHHH--HhcCCC
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-N----KEAFSDPRLELVINDARAE--LESRKE 174 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~-~----~~~~~~~rv~i~~~Da~~~--l~~~~~ 174 (257)
+....+|||+|.|-....++...+..+..+||+.+...+.|++.... . .-+....+++++.+|..+. ....-.
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s 121 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIWS 121 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHGH
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhhc
Confidence 45678999999999987776655677899999999999988764321 0 0112356889999997542 221114
Q ss_pred ceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025107 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (257)
Q Consensus 175 ~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~ 217 (257)
.-|+|+++..-- .+ .| ...+.. ....||+|-.++.
T Consensus 122 ~AdvVf~Nn~~F---~~--~l--~~~L~~-~~~~lk~G~~IIs 156 (205)
T PF08123_consen 122 DADVVFVNNTCF---DP--DL--NLALAE-LLLELKPGARIIS 156 (205)
T ss_dssp C-SEEEE--TTT----H--HH--HHHHHH-HHTTS-TT-EEEE
T ss_pred CCCEEEEecccc---CH--HH--HHHHHH-HHhcCCCCCEEEE
Confidence 579999986421 11 11 223344 3567888887765
No 235
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.34 E-value=0.00027 Score=61.02 Aligned_cols=106 Identities=25% Similarity=0.375 Sum_probs=69.0
Q ss_pred CCeEEEEeccchHHHHHHHhcCCC--cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH-Hhc--CCCcee
Q 025107 103 PKTIFIMGGGEGSTAREILRHKTV--EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LES--RKESYD 177 (257)
Q Consensus 103 ~~~VL~IG~G~G~~~~~l~~~~~~--~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~-l~~--~~~~fD 177 (257)
+.+||+||||.|.+..-+++..+. -+|.++|.+|..++..+++-... ..++.-.+-|...- +.. ..+.+|
T Consensus 72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~-----e~~~~afv~Dlt~~~~~~~~~~~svD 146 (264)
T KOG2361|consen 72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD-----ESRVEAFVWDLTSPSLKEPPEEGSVD 146 (264)
T ss_pred hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc-----hhhhcccceeccchhccCCCCcCccc
Confidence 347999999999999999986544 68999999999999999875433 12333222222111 222 236788
Q ss_pred EEEEcCC-CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 178 VIIGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 178 vIi~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
+|.+--. +.. .| .. -...+.. +.++|||||.+++..
T Consensus 147 ~it~IFvLSAi--~p-ek--~~~a~~n-l~~llKPGG~llfrD 183 (264)
T KOG2361|consen 147 IITLIFVLSAI--HP-EK--MQSVIKN-LRTLLKPGGSLLFRD 183 (264)
T ss_pred eEEEEEEEecc--Ch-HH--HHHHHHH-HHHHhCCCcEEEEee
Confidence 7665422 111 22 11 1245666 689999999999864
No 236
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.28 E-value=0.0034 Score=58.25 Aligned_cols=141 Identities=14% Similarity=0.042 Sum_probs=98.0
Q ss_pred CCC-CCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCce
Q 025107 100 HPN-PKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESY 176 (257)
Q Consensus 100 ~~~-~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~f 176 (257)
.|. ..||||+++..|+=+.+++.. .....|.+-|.+..-++..+.++...+ -.+..+.+.|+++|-+. ...+|
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG----v~ntiv~n~D~~ef~~~~~~~~f 313 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG----VTNTIVSNYDGREFPEKEFPGSF 313 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC----CCceEEEccCcccccccccCccc
Confidence 444 589999999999866666553 234589999999999999998876543 35677888999887533 33489
Q ss_pred eEEEEcCCCCCC---CCc--------------ccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHh
Q 025107 177 DVIIGDLADPIE---GGP--------------CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLR 239 (257)
Q Consensus 177 DvIi~D~~~~~~---~~p--------------~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~ 239 (257)
|-|++|++-... ..+ ..+| .++.+.. +-+.+++||+|+-.+.+- ..+.-+..++.+-
T Consensus 314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~L-Qr~Llls-Ai~lv~~GGvLVYSTCSI----~~~ENE~vV~yaL 387 (460)
T KOG1122|consen 314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHL-QRELLLS-AIDLVKAGGVLVYSTCSI----TVEENEAVVDYAL 387 (460)
T ss_pred ceeeecCCCCCCcccccccccccchhHHHHHHhHHH-HHHHHHH-HHhhccCCcEEEEEeeec----chhhhHHHHHHHH
Confidence 999999983221 001 0122 2455555 578999999998765432 3455678888888
Q ss_pred hhCCceEEEee
Q 025107 240 QVFKCGCCALF 250 (257)
Q Consensus 240 ~~F~~v~~~~~ 250 (257)
+.||+++.-..
T Consensus 388 ~K~p~~kL~p~ 398 (460)
T KOG1122|consen 388 KKRPEVKLVPT 398 (460)
T ss_pred HhCCceEeccc
Confidence 88888876443
No 237
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.28 E-value=0.00092 Score=52.73 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=45.2
Q ss_pred EEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcc
Q 025107 106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND 164 (257)
Q Consensus 106 VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~D 164 (257)
+||||||.|..+..+++..+..+|+++|.+|...+.+++++..++ -++++++...
T Consensus 2 vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~----~~~v~~~~~a 56 (143)
T TIGR01444 2 VIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN----LPNVVLLNAA 56 (143)
T ss_pred EEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC----CCcEEEEEee
Confidence 799999999999998887554589999999999999999987552 2457776654
No 238
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.26 E-value=0.0028 Score=54.23 Aligned_cols=99 Identities=19% Similarity=0.280 Sum_probs=69.1
Q ss_pred CCeEEEEeccchHHHHHHH-hcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025107 103 PKTIFIMGGGEGSTAREIL-RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (257)
Q Consensus 103 ~~~VL~IG~G~G~~~~~l~-~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~ 181 (257)
+++++|||.|.|.=+.-++ ..+. .+||.+|....=+...++-..- +.-++++++++.+.++-.+... ||+|.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~-~~vtLles~~Kk~~FL~~~~~e----L~L~nv~i~~~RaE~~~~~~~~-~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPD-LKVTLLESLGKKIAFLREVKKE----LGLENVEIVHGRAEEFGQEKKQ-YDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccC-CcEEEEccCchHHHHHHHHHHH----hCCCCeEEehhhHhhccccccc-CcEEEe
Confidence 6899999999997544433 2344 5699999998877666654331 2357899999999888543223 999999
Q ss_pred cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
-+..+. .....- +...|++||.++..
T Consensus 142 RAva~L----------~~l~e~-~~pllk~~g~~~~~ 167 (215)
T COG0357 142 RAVASL----------NVLLEL-CLPLLKVGGGFLAY 167 (215)
T ss_pred ehccch----------HHHHHH-HHHhcccCCcchhh
Confidence 876432 133444 57899998887653
No 239
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=97.25 E-value=0.001 Score=63.17 Aligned_cols=105 Identities=18% Similarity=0.324 Sum_probs=76.3
Q ss_pred CeEEEEeccchHHHHHHHhc----CCCcEEEEEECCHHHHHHHHh-hhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025107 104 KTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKS-YLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (257)
Q Consensus 104 ~~VL~IG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~-~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv 178 (257)
..|+++|+|-|=+....++. ..--++.+||.+|..+-..+. ++.. =+.+|+++..|.|.|- .+.++.|+
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~-----W~~~Vtii~~DMR~w~-ap~eq~DI 442 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFEC-----WDNRVTIISSDMRKWN-APREQADI 442 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhh-----hcCeeEEEeccccccC-Cchhhccc
Confidence 45778999999987766652 122478999999999877665 2221 2579999999999996 22488999
Q ss_pred EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
|++.+-... + ..-.+.|-+.- +-+.|||+|+.+-..
T Consensus 443 ~VSELLGSF--G--DNELSPECLDG-~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 443 IVSELLGSF--G--DNELSPECLDG-AQKFLKPDGISIPSS 478 (649)
T ss_pred hHHHhhccc--c--CccCCHHHHHH-HHhhcCCCceEccch
Confidence 999876433 1 12236777787 788999999988654
No 240
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.13 E-value=0.0051 Score=52.52 Aligned_cols=105 Identities=16% Similarity=0.152 Sum_probs=83.1
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
+...++.||||--+.++.++.+..+...++++|+++-.++.|.+++..++ ..++++++.+|+..-++. ++..|+|+
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~---l~~~i~vr~~dgl~~l~~-~d~~d~iv 90 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN---LSERIDVRLGDGLAVLEL-EDEIDVIV 90 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC---CcceEEEeccCCccccCc-cCCcCEEE
Confidence 44556999999999999999997777899999999999999999998654 568999999999776643 45799998
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
+..-. ...-.+++++ -++.|+.--.+++|
T Consensus 91 IAGMG--------G~lI~~ILee-~~~~l~~~~rlILQ 119 (226)
T COG2384 91 IAGMG--------GTLIREILEE-GKEKLKGVERLILQ 119 (226)
T ss_pred EeCCc--------HHHHHHHHHH-hhhhhcCcceEEEC
Confidence 87432 1234677777 67788755567765
No 241
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.12 E-value=0.0014 Score=58.66 Aligned_cols=111 Identities=17% Similarity=0.176 Sum_probs=66.4
Q ss_pred CCCeEEEEeccchHH----HHHHHhc----CCCcEEEEEECCHHHHHHHHhhh------------------hhc-c--CC
Q 025107 102 NPKTIFIMGGGEGST----AREILRH----KTVEKVVMCDIDEEVVEFCKSYL------------------VVN-K--EA 152 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~----~~~l~~~----~~~~~v~~VEid~~vi~~a~~~~------------------~~~-~--~~ 152 (257)
.+-+|...||++|-= +..+... ...-+|++.|||+.+++.|++-. ... + +.
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 346999999999973 2222221 11247999999999999999741 100 0 00
Q ss_pred -C-----CCCCeEEEEcchHHHHhcCCCceeEEEEcCC-CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 153 -F-----SDPRLELVINDARAELESRKESYDVIIGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 153 -~-----~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
+ -..+|++...|..+.--...++||+|++--. -.. .+ -.....++. +.+.|+|||++++-
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF--~~---~~~~~vl~~-l~~~L~pgG~L~lG 261 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF--DK---TTQERILRR-FVPLLKPDGLLFAG 261 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC--CH---HHHHHHHHH-HHHHhCCCcEEEEe
Confidence 0 0135556655554310011368999998421 111 11 123567788 79999999998874
No 242
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.02 E-value=0.001 Score=63.00 Aligned_cols=80 Identities=23% Similarity=0.269 Sum_probs=63.8
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCC----Cce
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK----ESY 176 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~----~~f 176 (257)
+..+-+||+.||+|.+...++++ +.+|.+||++|+.++-|+++...|+ -.+.+++.+-|.+.+.... +.=
T Consensus 382 ~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~Ng----isNa~Fi~gqaE~~~~sl~~~~~~~~ 455 (534)
T KOG2187|consen 382 PADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQING----ISNATFIVGQAEDLFPSLLTPCCDSE 455 (534)
T ss_pred CCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcC----ccceeeeecchhhccchhcccCCCCC
Confidence 45588999999999999999884 5799999999999999999987763 4688999997777654422 233
Q ss_pred e-EEEEcCCCC
Q 025107 177 D-VIIGDLADP 186 (257)
Q Consensus 177 D-vIi~D~~~~ 186 (257)
+ ++++|++..
T Consensus 456 ~~v~iiDPpR~ 466 (534)
T KOG2187|consen 456 TLVAIIDPPRK 466 (534)
T ss_pred ceEEEECCCcc
Confidence 5 788898753
No 243
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.00 E-value=0.011 Score=52.50 Aligned_cols=121 Identities=16% Similarity=0.211 Sum_probs=78.8
Q ss_pred eEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-CCceeEEEEcC
Q 025107 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDVIIGDL 183 (257)
Q Consensus 105 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-~~~fDvIi~D~ 183 (257)
+|+++.||.|++...+.+. +...+.++|+|+..++..+++++.. ++.+|..++.... ...+|+|+.++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~~~~----------~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANFPNK----------LIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhCCCC----------CccCccccCchhhcCCCCCEEEeCC
Confidence 6899999999998777764 5667899999999999999887421 4566766655433 45799999998
Q ss_pred CCC-CC--------CCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCC--ChHHHHHHHHHHhhh
Q 025107 184 ADP-IE--------GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFS--HTEVFSCIYNTLRQV 241 (257)
Q Consensus 184 ~~~-~~--------~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~--~~~~~~~~~~~l~~~ 241 (257)
+-. .+ ..+...| -.++++. + +.++|.=+++=|. ++... ....+..+.+.|++.
T Consensus 71 PCq~fS~ag~~~~~~d~r~~L-~~~~~~~-i-~~~~P~~~v~ENV--~g~~~~~~~~~~~~i~~~l~~~ 134 (275)
T cd00315 71 PCQPFSIAGKRKGFEDTRGTL-FFEIIRI-L-KEKKPKYFLLENV--KGLLTHDNGNTLKVILNTLEEL 134 (275)
T ss_pred CChhhhHHhhcCCCCCchHHH-HHHHHHH-H-HhcCCCEEEEEcC--cchhccCchHHHHHHHHHHHhC
Confidence 721 11 0111122 2466664 3 4668885555454 22111 245677777777764
No 244
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.97 E-value=0.0061 Score=54.14 Aligned_cols=46 Identities=20% Similarity=0.385 Sum_probs=38.0
Q ss_pred CCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhh
Q 025107 102 NPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLV 147 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~ 147 (257)
.|++|||+|+|.|+.+..+... +...++++||.++.++++++.-+.
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~ 79 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLR 79 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHh
Confidence 5889999999999877655543 345789999999999999998764
No 245
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.96 E-value=0.0024 Score=60.55 Aligned_cols=129 Identities=19% Similarity=0.215 Sum_probs=67.5
Q ss_pred EEcCcccccCCCchhHHHHHHH-HHhh-cCCCCCeEEEEeccchHHHHHHHhcCCCcEEEE--EECCHHHHHHHHhh-hh
Q 025107 73 VIDGKLQSAEVDEFIYHESLVH-PALL-HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVM--CDIDEEVVEFCKSY-LV 147 (257)
Q Consensus 73 ~ldG~~~~~~~~~~~y~e~l~~-~~l~-~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~--VEid~~vi~~a~~~-~~ 147 (257)
|-.|..|+.... ..|.+.+.. +++. ....-+.+||+|||.|+++..++.+ ++..+.. -|..+..++.|-+. ++
T Consensus 87 FPgggt~F~~Ga-~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfaleRGvp 164 (506)
T PF03141_consen 87 FPGGGTMFPHGA-DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALERGVP 164 (506)
T ss_pred eCCCCccccCCH-HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhhcCcc
Confidence 344445544322 246655543 2332 2233478999999999999999985 3332221 13444445554432 22
Q ss_pred hccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCC-CCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCC
Q 025107 148 VNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA-DPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (257)
Q Consensus 148 ~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~-~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~ 222 (257)
..-..+ +.+-|.-....||+|=+.-. .+|. +... -++-+ +.|+|+|||.++. +++|
T Consensus 165 a~~~~~-----------~s~rLPfp~~~fDmvHcsrc~i~W~--~~~g----~~l~e-vdRvLRpGGyfv~-S~pp 221 (506)
T PF03141_consen 165 AMIGVL-----------GSQRLPFPSNAFDMVHCSRCLIPWH--PNDG----FLLFE-VDRVLRPGGYFVL-SGPP 221 (506)
T ss_pred hhhhhh-----------ccccccCCccchhhhhcccccccch--hccc----ceeeh-hhhhhccCceEEe-cCCc
Confidence 110000 11223334578998855433 2442 1111 13345 6899999999874 4555
No 246
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.93 E-value=0.002 Score=57.81 Aligned_cols=79 Identities=16% Similarity=0.141 Sum_probs=47.6
Q ss_pred CCeEEEEeccchHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcch----HHHHhcCCCcee
Q 025107 103 PKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDA----RAELESRKESYD 177 (257)
Q Consensus 103 ~~~VL~IG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da----~~~l~~~~~~fD 177 (257)
..++||||+|.-.+ +.-..+..+ =++++.|||+..++.|+++...+.. ...+++++...- +..+....++||
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~-W~fvaTdID~~sl~~A~~nv~~N~~--L~~~I~l~~~~~~~~i~~~i~~~~e~~d 179 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYG-WSFVATDIDPKSLESARENVERNPN--LESRIELRKQKNPDNIFDGIIQPNERFD 179 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T---TTTEEEEE--ST-SSTTTSTT--S-EE
T ss_pred ceEeecCCccHHHHHHHHhhhhcC-CeEEEecCCHHHHHHHHHHHHhccc--cccceEEEEcCCccccchhhhcccceee
Confidence 46899999998875 333334344 4899999999999999999876521 467898876532 222333457899
Q ss_pred EEEEcCC
Q 025107 178 VIIGDLA 184 (257)
Q Consensus 178 vIi~D~~ 184 (257)
+.++++|
T Consensus 180 ftmCNPP 186 (299)
T PF05971_consen 180 FTMCNPP 186 (299)
T ss_dssp EEEE---
T ss_pred EEecCCc
Confidence 9999987
No 247
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.92 E-value=0.03 Score=50.83 Aligned_cols=110 Identities=12% Similarity=0.087 Sum_probs=71.6
Q ss_pred CCCCeEEEEeccchHHHHHHHhc----CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEE--EEcchHHH---Hhc
Q 025107 101 PNPKTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL--VINDARAE---LES 171 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i--~~~Da~~~---l~~ 171 (257)
+++..++++|||+|.=++.++.. ....+.+.|||+.+.++.+.+.+... .-|.+++ +.+|..+- +..
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~----~~p~l~v~~l~gdy~~~l~~l~~ 150 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG----NFSHVRCAGLLGTYDDGLAWLKR 150 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc----cCCCeEEEEEEecHHHHHhhccc
Confidence 45567999999999966555542 12357999999999999999887621 1266666 67766554 432
Q ss_pred C--CCceeEEEEcCCC-CCCCCcccCCchHHHHHHHHcC-cCCCCcEEEEec
Q 025107 172 R--KESYDVIIGDLAD-PIEGGPCYKLYTKSFYEFVVKP-RLNPEGIFVTQA 219 (257)
Q Consensus 172 ~--~~~fDvIi~D~~~-~~~~~p~~~L~t~ef~~~~~~~-~L~pgGil~~~~ 219 (257)
. .....+|+.=... ++ ..| --...|++. +++ .|+|||.+++-.
T Consensus 151 ~~~~~~~r~~~flGSsiGN-f~~---~ea~~fL~~-~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 151 PENRSRPTTILWLGSSIGN-FSR---PEAAAFLAG-FLATALSPSDSFLIGL 197 (319)
T ss_pred ccccCCccEEEEeCccccC-CCH---HHHHHHHHH-HHHhhCCCCCEEEEec
Confidence 1 2345665543321 22 112 224578898 788 999999988754
No 248
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.89 E-value=0.0045 Score=49.40 Aligned_cols=106 Identities=24% Similarity=0.188 Sum_probs=64.6
Q ss_pred EEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCC-ceeEEEEcCC-CCCCCC--cccCCchHHHHHH
Q 025107 128 KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE-SYDVIIGDLA-DPIEGG--PCYKLYTKSFYEF 203 (257)
Q Consensus 128 ~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~-~fDvIi~D~~-~~~~~~--p~~~L~t~ef~~~ 203 (257)
+|.+.||.++.++.+++.+.... ...|++++...=.+..+..++ +.|+++.++- -|..+. ....-.|...++.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~---~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~ 77 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG---LEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEA 77 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT----GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcC---CCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHH
Confidence 58999999999999999886432 235899988664444333344 8999999973 333211 0011235678888
Q ss_pred HHcCcCCCCcEEEEec--CCCCCCCChHHHHHHHHHHhh
Q 025107 204 VVKPRLNPEGIFVTQA--GPAGIFSHTEVFSCIYNTLRQ 240 (257)
Q Consensus 204 ~~~~~L~pgGil~~~~--~~~~~~~~~~~~~~~~~~l~~ 240 (257)
+.+.|+|||++++-. |++ ...+....+.+.+++
T Consensus 78 -al~lL~~gG~i~iv~Y~GH~---gG~eE~~av~~~~~~ 112 (140)
T PF06962_consen 78 -ALELLKPGGIITIVVYPGHP---GGKEESEAVEEFLAS 112 (140)
T ss_dssp -HHHHEEEEEEEEEEE--STC---HHHHHHHHHHHHHHT
T ss_pred -HHHhhccCCEEEEEEeCCCC---CCHHHHHHHHHHHHh
Confidence 689999999988765 333 123344455555544
No 249
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.86 E-value=0.00099 Score=57.66 Aligned_cols=81 Identities=21% Similarity=0.190 Sum_probs=50.3
Q ss_pred CeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc--cCCC---CCCCeEEEEcchHHHHhcCCCceeE
Q 025107 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN--KEAF---SDPRLELVINDARAELESRKESYDV 178 (257)
Q Consensus 104 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~--~~~~---~~~rv~i~~~Da~~~l~~~~~~fDv 178 (257)
.+|||.=+|-|.-+..++.. + ++|+++|-+|.+..+.+.-+... .... .-.|++++++|+.+|++.....||+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~-G-~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV 154 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL-G-CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV 154 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH-T---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred CEEEECCCcchHHHHHHHcc-C-CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence 48999888888877776654 4 58999999999998887654311 1100 1148999999999999965689999
Q ss_pred EEEcCCCC
Q 025107 179 IIGDLADP 186 (257)
Q Consensus 179 Ii~D~~~~ 186 (257)
|.+||--|
T Consensus 155 VY~DPMFp 162 (234)
T PF04445_consen 155 VYFDPMFP 162 (234)
T ss_dssp EEE--S--
T ss_pred EEECCCCC
Confidence 99999543
No 250
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.86 E-value=0.0098 Score=53.59 Aligned_cols=78 Identities=21% Similarity=0.209 Sum_probs=62.8
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---CC-Ccee
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RK-ESYD 177 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~---~~-~~fD 177 (257)
++..++|.=+|.|+-+..+++..+..+|+++|.||.+++.+++.+... ..|+++++++..++.+. .+ .++|
T Consensus 20 ~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~-----~~R~~~i~~nF~~l~~~l~~~~~~~vD 94 (305)
T TIGR00006 20 PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF-----EGRVVLIHDNFANFFEHLDELLVTKID 94 (305)
T ss_pred CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc-----CCcEEEEeCCHHHHHHHHHhcCCCccc
Confidence 346899999999999999998643479999999999999999976422 36999999998876543 22 5799
Q ss_pred EEEEcCC
Q 025107 178 VIIGDLA 184 (257)
Q Consensus 178 vIi~D~~ 184 (257)
.|+.|+-
T Consensus 95 gIl~DLG 101 (305)
T TIGR00006 95 GILVDLG 101 (305)
T ss_pred EEEEecc
Confidence 9999984
No 251
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.81 E-value=0.021 Score=42.99 Aligned_cols=102 Identities=21% Similarity=0.215 Sum_probs=64.7
Q ss_pred EEEEeccchHHHHHHHhcCCC-cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH-HhcCC-CceeEEEEc
Q 025107 106 IFIMGGGEGSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LESRK-ESYDVIIGD 182 (257)
Q Consensus 106 VL~IG~G~G~~~~~l~~~~~~-~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~-l~~~~-~~fDvIi~D 182 (257)
++++|||.|... .+...... ..++++|+++.+++.++...... ....+.+...|.... +.-.. ..||++...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 126 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGA----GLGLVDFVVADALGGVLPFEDSASFDLVISL 126 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhc----CCCceEEEEeccccCCCCCCCCCceeEEeee
Confidence 999999999976 33332221 37888999999998855443211 011167888887662 33333 479999333
Q ss_pred CCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025107 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (257)
Q Consensus 183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~ 220 (257)
..... . . ....+.. +.+.|+|+|.+++...
T Consensus 127 ~~~~~--~---~--~~~~~~~-~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 127 LVLHL--L---P--PAKALRE-LLRVLKPGGRLVLSDL 156 (257)
T ss_pred eehhc--C---C--HHHHHHH-HHHhcCCCcEEEEEec
Confidence 22111 0 1 3567777 7899999998887653
No 252
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.79 E-value=0.0014 Score=58.31 Aligned_cols=189 Identities=17% Similarity=0.165 Sum_probs=116.2
Q ss_pred CcCCCCccccCeEEeeeccccceee---eeccEEEEeecCCCcEEEEEecCCeeEEEEcCcccccCCCchhHHHHHHHHH
Q 025107 20 NVALTGYRKSCWYEEEIEENLRWSF---ALNSILHTGETRYQDIALLDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPA 96 (257)
Q Consensus 20 ~~~~~~~~~~~w~~~~~~~~~~~~~---~~~~il~~~~s~~~~i~v~~~~~~g~~L~ldG~~~~~~~~~~~y~e~l~~~~ 96 (257)
||-+=+-+++.=+.|.+++..--+. +...+|...+++++++.+-+ +..+.++.+++..+..+.+ ..|...|+.
T Consensus 95 gviqlte~de~~Yqemi~~l~l~s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~s-k~y~p~la~-- 170 (337)
T KOG1562|consen 95 GVIQLTERDEFAYQEMIAHLALCSHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESS-KQYLPTLAC-- 170 (337)
T ss_pred CeeeCCccccccceeeeeccccccCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHH-HHHhHHHhc--
Confidence 3333344444445556553322222 34568999999999998888 6678888888776555433 346655542
Q ss_pred hhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh----hhhccCCCCCCCeEEEEcchHHHHhc-
Q 025107 97 LLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY----LVVNKEAFSDPRLELVINDARAELES- 171 (257)
Q Consensus 97 l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~----~~~~~~~~~~~rv~i~~~Da~~~l~~- 171 (257)
.-..++|.++|| +|....+.++..+ ..|+.+|+|..+......| |..-..++....+.+..+|...+...
T Consensus 171 ---gy~~~~v~l~iG-DG~~fl~~~~~~~-~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~ 245 (337)
T KOG1562|consen 171 ---GYEGKKVKLLIG-DGFLFLEDLKENP-FDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDY 245 (337)
T ss_pred ---ccCCCceEEEec-cHHHHHHHhccCC-ceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHH
Confidence 135678988888 8888888886543 6899999999998877665 44333456778899999988655432
Q ss_pred --CCCceeEEEEcCCC-CCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025107 172 --RKESYDVIIGDLAD-PIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (257)
Q Consensus 172 --~~~~fDvIi~D~~~-~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~ 220 (257)
...+||-++.|..+ ++...|.... .+-.|..| .. |+|+|-+.....
T Consensus 246 i~e~r~~~~~~f~~t~ya~ttvPTyps-g~igf~l~-s~-~~~~~~~~~p~n 294 (337)
T KOG1562|consen 246 IKEGRSFCYVIFDLTAYAITTVPTYPS-GRIGFMLC-SK-LKPDGKYKTPGN 294 (337)
T ss_pred HHHHHHhHHHhcCccceeeecCCCCcc-ceEEEEEe-cc-cCCCCCccCCCC
Confidence 12445655555432 2322331111 11112222 33 999998887553
No 253
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.73 E-value=0.018 Score=48.18 Aligned_cols=125 Identities=18% Similarity=0.160 Sum_probs=75.1
Q ss_pred CCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE----cchHHHHh---c-C
Q 025107 102 NPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI----NDARAELE---S-R 172 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~----~Da~~~l~---~-~ 172 (257)
+..+||++|+..|+.+..+.+.. +...|.+|||-.-. +. +.++++. .|-..+.+ . +
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~--------p~-------~Ga~~i~~~dvtdp~~~~ki~e~lp 133 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE--------PP-------EGATIIQGNDVTDPETYRKIFEALP 133 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc--------CC-------CCcccccccccCCHHHHHHHHHhCC
Confidence 45799999999999998888763 56789999984221 22 1222222 23332221 1 3
Q ss_pred CCceeEEEEcCCCCCCCCc--ccCCchH----HHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceE
Q 025107 173 KESYDVIIGDLADPIEGGP--CYKLYTK----SFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGC 246 (257)
Q Consensus 173 ~~~fDvIi~D~~~~~~~~p--~~~L~t~----ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~ 246 (257)
+.+.|+|++|..... .+. ..|.... +.+.- .-..+.|+|.++... |. ...-..+.+.|.+.|..|.
T Consensus 134 ~r~VdvVlSDMapna-TGvr~~Dh~~~i~LC~s~l~~-al~~~~p~g~fvcK~-----w~-g~e~~~l~r~l~~~f~~Vk 205 (232)
T KOG4589|consen 134 NRPVDVVLSDMAPNA-TGVRIRDHYRSIELCDSALLF-ALTLLIPNGSFVCKL-----WD-GSEEALLQRRLQAVFTNVK 205 (232)
T ss_pred CCcccEEEeccCCCC-cCcchhhHHHHHHHHHHHHHH-hhhhcCCCcEEEEEE-----ec-CCchHHHHHHHHHHhhhcE
Confidence 578999999987421 121 1122111 22222 356788999999764 22 2223466677888888887
Q ss_pred EEe
Q 025107 247 CAL 249 (257)
Q Consensus 247 ~~~ 249 (257)
.+.
T Consensus 206 ~vK 208 (232)
T KOG4589|consen 206 KVK 208 (232)
T ss_pred eeC
Confidence 653
No 254
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.69 E-value=0.0078 Score=51.11 Aligned_cols=104 Identities=16% Similarity=0.138 Sum_probs=53.2
Q ss_pred CCCCeEEEEeccchHHHHHHHh---c-CCCcEEEEEECCHHHH-HHHHhhhhhccCCCCCCCeEEEEcchHHH-----Hh
Q 025107 101 PNPKTIFIMGGGEGSTAREILR---H-KTVEKVVMCDIDEEVV-EFCKSYLVVNKEAFSDPRLELVINDARAE-----LE 170 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~---~-~~~~~v~~VEid~~vi-~~a~~~~~~~~~~~~~~rv~i~~~Da~~~-----l~ 170 (257)
.+|+.|+++|.-.|+.+...+. . .+.++|.+||||..-. +.+.+..++ .+|++++.||..+- ++
T Consensus 31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~------~~rI~~i~Gds~d~~~~~~v~ 104 (206)
T PF04989_consen 31 LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM------SPRITFIQGDSIDPEIVDQVR 104 (206)
T ss_dssp H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----------TTEEEEES-SSSTHHHHTSG
T ss_pred hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc------cCceEEEECCCCCHHHHHHHH
Confidence 4788999999988887765443 2 2457999999975433 223322222 38999999997532 22
Q ss_pred cC--CCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 171 SR--KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 171 ~~--~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
.. .....+|+.|+.... .+. ..-++. ....+++|+.+++.
T Consensus 105 ~~~~~~~~vlVilDs~H~~-----~hv--l~eL~~-y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 105 ELASPPHPVLVILDSSHTH-----EHV--LAELEA-YAPLVSPGSYLIVE 146 (206)
T ss_dssp SS----SSEEEEESS---------SSH--HHHHHH-HHHT--TT-EEEET
T ss_pred HhhccCCceEEEECCCccH-----HHH--HHHHHH-hCccCCCCCEEEEE
Confidence 22 245669999976322 122 233454 57799999999874
No 255
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.55 E-value=0.012 Score=52.17 Aligned_cols=111 Identities=15% Similarity=0.120 Sum_probs=64.6
Q ss_pred CCCeEEEEeccchH----HHHHHHhcCC-----CcEEEEEECCHHHHHHHHhhh-h-hcc-CC------------CCC--
Q 025107 102 NPKTIFIMGGGEGS----TAREILRHKT-----VEKVVMCDIDEEVVEFCKSYL-V-VNK-EA------------FSD-- 155 (257)
Q Consensus 102 ~~~~VL~IG~G~G~----~~~~l~~~~~-----~~~v~~VEid~~vi~~a~~~~-~-~~~-~~------------~~~-- 155 (257)
.+-+|.-.||++|- ++..+..+.+ .-+|++.|||..+++.|++-. + ... .. ..+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 47799999999996 4444444321 358999999999999998731 1 000 00 011
Q ss_pred --------CCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 156 --------PRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 156 --------~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
..|.+..-|...--. ..+.||+|++-----.-.. -...+.++. .+..|+|||+|++-
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIYFd~----~~q~~il~~-f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIYFDE----ETQERILRR-FADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEeeCH----HHHHHHHHH-HHHHhCCCCEEEEc
Confidence 122232222211000 2356999998532100001 123567777 78999999999874
No 256
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.52 E-value=0.011 Score=51.02 Aligned_cols=98 Identities=18% Similarity=0.208 Sum_probs=64.3
Q ss_pred CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CCCcee
Q 025107 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD 177 (257)
Q Consensus 100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~~~fD 177 (257)
..+.+.+||||..+|+++..++.. ++.+|.+||.--.-+..- +- +|||+.++..-=..++.. ..+..|
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~-gAk~VyavDVG~~Ql~~k-----LR----~d~rV~~~E~tN~r~l~~~~~~~~~d 146 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQR-GAKHVYAVDVGYGQLHWK-----LR----NDPRVIVLERTNVRYLTPEDFTEKPD 146 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHc-CCcEEEEEEccCCccCHh-----Hh----cCCcEEEEecCChhhCCHHHcccCCC
Confidence 467899999999999999999995 678999999865433221 11 578988766433333432 235789
Q ss_pred EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025107 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (257)
Q Consensus 178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~ 217 (257)
+|++|..- .+ ....+.. +...|+|++-++.
T Consensus 147 ~~v~DvSF----IS-----L~~iLp~-l~~l~~~~~~~v~ 176 (245)
T COG1189 147 LIVIDVSF----IS-----LKLILPA-LLLLLKDGGDLVL 176 (245)
T ss_pred eEEEEeeh----hh-----HHHHHHH-HHHhcCCCceEEE
Confidence 99999752 11 1223334 4556666665554
No 257
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.51 E-value=0.029 Score=51.42 Aligned_cols=139 Identities=14% Similarity=0.121 Sum_probs=83.7
Q ss_pred CCCCeEEEEeccchHHHHHHHhc--CC--CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh------
Q 025107 101 PNPKTIFIMGGGEGSTAREILRH--KT--VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE------ 170 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~--~~--~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~------ 170 (257)
.+..+|||+++.-|+=+..++.. .. ...|.+=|.|+.=....++-.... ..+++.+...|+-.+=.
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l----~~~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL----PSPNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc----CCcceeeecccceeccccccccC
Confidence 34589999999999977666652 22 237999999998777666544321 23455555555433211
Q ss_pred --cCCCceeEEEEcCCCCCC----CCc-------------ccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHH
Q 025107 171 --SRKESYDVIIGDLADPIE----GGP-------------CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVF 231 (257)
Q Consensus 171 --~~~~~fDvIi~D~~~~~~----~~p-------------~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~ 231 (257)
.....||-|++|.+-... ..+ .-+......++. ..+.|++||.++-.+.+-+...+....
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~r-gl~lLk~GG~lVYSTCSLnpieNEaVV 308 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRR-GLRLLKVGGRLVYSTCSLNPIENEAVV 308 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHH-HHHHhcCCCEEEEeccCCCchhhHHHH
Confidence 123579999999972111 011 012223456666 478999999999766443323344455
Q ss_pred HHHHHHHhhhCCc
Q 025107 232 SCIYNTLRQVFKC 244 (257)
Q Consensus 232 ~~~~~~l~~~F~~ 244 (257)
.++++.+...|+-
T Consensus 309 ~~~L~~~~~~~~l 321 (375)
T KOG2198|consen 309 QEALQKVGGAVEL 321 (375)
T ss_pred HHHHHHhcCcccc
Confidence 5665555555543
No 258
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.40 E-value=0.0045 Score=52.62 Aligned_cols=107 Identities=22% Similarity=0.279 Sum_probs=57.0
Q ss_pred CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025107 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
.|+...|-|+|||++.++..+-. .-+|...|+-. .+++ ++..|..+ +.-.++..|++
T Consensus 70 ~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva-----------------~n~~--Vtacdia~-vPL~~~svDv~ 126 (219)
T PF05148_consen 70 RPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVA-----------------PNPR--VTACDIAN-VPLEDESVDVA 126 (219)
T ss_dssp S-TTS-EEEES-TT-HHHHH--S------EEEEESS------------------SSTT--EEES-TTS--S--TT-EEEE
T ss_pred cCCCEEEEECCCchHHHHHhccc---CceEEEeeccC-----------------CCCC--EEEecCcc-CcCCCCceeEE
Confidence 34556899999999999976532 13577777721 1233 44566522 33345889999
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (257)
+..+.-- +.. -.+|+++ +.|+|||||.+.+--.... +. ....+.+.+.+.
T Consensus 127 VfcLSLM---GTn----~~~fi~E-A~RvLK~~G~L~IAEV~SR-f~---~~~~F~~~~~~~ 176 (219)
T PF05148_consen 127 VFCLSLM---GTN----WPDFIRE-ANRVLKPGGILKIAEVKSR-FE---NVKQFIKALKKL 176 (219)
T ss_dssp EEES------SS-----HHHHHHH-HHHHEEEEEEEEEEEEGGG--S----HHHHHHHHHCT
T ss_pred EEEhhhh---CCC----cHHHHHH-HHheeccCcEEEEEEeccc-Cc---CHHHHHHHHHHC
Confidence 9887631 111 2588999 8999999999887432221 22 234555555544
No 259
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.31 E-value=0.037 Score=49.52 Aligned_cols=77 Identities=23% Similarity=0.219 Sum_probs=61.8
Q ss_pred CCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---C-CCcee
Q 025107 103 PKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---R-KESYD 177 (257)
Q Consensus 103 ~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~---~-~~~fD 177 (257)
..-.+|.=.|.|+-++.++.. ++..+++++|.||.+++.|++.+.-. ++|++++++...+.... . ..++|
T Consensus 24 ~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~-----~~r~~~v~~~F~~l~~~l~~~~i~~vD 98 (314)
T COG0275 24 DGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF-----DGRVTLVHGNFANLAEALKELGIGKVD 98 (314)
T ss_pred CcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc-----CCcEEEEeCcHHHHHHHHHhcCCCcee
Confidence 367888888999999999985 44567999999999999999987532 47999999987665432 2 36899
Q ss_pred EEEEcCC
Q 025107 178 VIIGDLA 184 (257)
Q Consensus 178 vIi~D~~ 184 (257)
-|+.|+-
T Consensus 99 GiL~DLG 105 (314)
T COG0275 99 GILLDLG 105 (314)
T ss_pred EEEEecc
Confidence 9999984
No 260
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.28 E-value=0.011 Score=46.91 Aligned_cols=64 Identities=20% Similarity=0.241 Sum_probs=47.3
Q ss_pred CCCCeEEEEeccchHHHHHHHh-----cCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchH
Q 025107 101 PNPKTIFIMGGGEGSTAREILR-----HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR 166 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~-----~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~ 166 (257)
.++..|+|+|+|-|.+++.++. .+ ..+|++||.++..++.++++....... -..++++..++..
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~ 92 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSP-NLRVLGIDCNESLVESAQKRAQKLGSD-LEKRLSFIQGDIA 92 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCC-CCeEEEEECCcHHHHHHHHHHHHhcch-hhccchhhccchh
Confidence 4578999999999999999988 54 469999999999999999876532111 1235555555443
No 261
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.27 E-value=0.051 Score=52.22 Aligned_cols=113 Identities=15% Similarity=0.153 Sum_probs=74.5
Q ss_pred CCCeEEEEeccchHHHHHHHhcCC----CcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc----CC
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKT----VEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES----RK 173 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~----~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~----~~ 173 (257)
...+|++--||+|++.....++-. ...+.+.|+++....+|+.++-+++... .+.+.++|-..-... ..
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~---~~~i~~~dtl~~~~~~~~~~~ 262 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG---DANIRHGDTLSNPKHDDKDDK 262 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc---cccccccccccCCcccccCCc
Confidence 446899999999998776666421 2578999999999999999987664211 445666664333222 33
Q ss_pred CceeEEEEcCCCC---CCC--------------C-cccCCch-HHHHHHHHcCcCCCCcEEEEe
Q 025107 174 ESYDVIIGDLADP---IEG--------------G-PCYKLYT-KSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 174 ~~fDvIi~D~~~~---~~~--------------~-p~~~L~t-~ef~~~~~~~~L~pgGil~~~ 218 (257)
++||.|+.++|.. |.. + +...--. .-|++. +...|+|+|...+-
T Consensus 263 ~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h-~~~~l~~~g~aaiv 325 (489)
T COG0286 263 GKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQH-ILYKLKPGGRAAIV 325 (489)
T ss_pred cceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHH-HHHhcCCCceEEEE
Confidence 6799999998742 110 1 1011112 468888 68899998855443
No 262
>PRK11524 putative methyltransferase; Provisional
Probab=96.26 E-value=0.019 Score=51.11 Aligned_cols=65 Identities=20% Similarity=0.196 Sum_probs=45.2
Q ss_pred CCCeEEEEcchHHHHhcC-CCceeEEEEcCCCCC--CC-CcccC-------CchHHHHHHHHcCcCCCCcEEEEecC
Q 025107 155 DPRLELVINDARAELESR-KESYDVIIGDLADPI--EG-GPCYK-------LYTKSFYEFVVKPRLNPEGIFVTQAG 220 (257)
Q Consensus 155 ~~rv~i~~~Da~~~l~~~-~~~fDvIi~D~~~~~--~~-~p~~~-------L~t~ef~~~~~~~~L~pgGil~~~~~ 220 (257)
....+++++|+.++++.. +++||+|++|||-.. .. ..... -+..+++.+ +.++|||||.+++...
T Consensus 6 ~~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 6 NEAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDE-CHRVLKKQGTMYIMNS 81 (284)
T ss_pred CCCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHH-HHHHhCCCcEEEEEcC
Confidence 456689999999998764 478999999987311 00 01000 112468888 6999999999998753
No 263
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.25 E-value=0.018 Score=50.18 Aligned_cols=76 Identities=22% Similarity=0.319 Sum_probs=52.7
Q ss_pred CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025107 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
.+.|.+|+|||||.-=++.-.....+...+.+.|||...++..++++... .++.++.+.|...- ...+..|+.
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l-----~~~~~~~v~Dl~~~--~~~~~~Dla 175 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL-----GVPHDARVRDLLSD--PPKEPADLA 175 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT-----T-CEEEEEE-TTTS--HTTSEESEE
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh-----CCCcceeEeeeecc--CCCCCcchh
Confidence 35689999999988777765555555569999999999999999998754 36778888875332 245779998
Q ss_pred EEc
Q 025107 180 IGD 182 (257)
Q Consensus 180 i~D 182 (257)
++=
T Consensus 176 Lll 178 (251)
T PF07091_consen 176 LLL 178 (251)
T ss_dssp EEE
T ss_pred hHH
Confidence 864
No 264
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.22 E-value=0.016 Score=49.14 Aligned_cols=114 Identities=16% Similarity=0.160 Sum_probs=81.7
Q ss_pred CeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc----cCCCCCCCeEEEEcchHHHHhcC--CCcee
Q 025107 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN----KEAFSDPRLELVINDARAELESR--KESYD 177 (257)
Q Consensus 104 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~----~~~~~~~rv~i~~~Da~~~l~~~--~~~fD 177 (257)
-.+.|||||=|+++.+++...+..-|.+.||--.|.+..++..... .++ .-+++.+...++..|+..- .++-+
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~-~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEG-QYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcccccc-ccccceeeeccchhhccchhhhcccc
Confidence 5789999999999999998877788999999999999999876421 122 2578899999999998652 23444
Q ss_pred EEEEcCCCCCC--CCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 178 VIIGDLADPIE--GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 178 vIi~D~~~~~~--~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
-++.-.++|.- ......+.+...+.+ ..=+|++||++.+-.
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~e-yay~l~~gg~~ytit 183 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSE-YAYVLREGGILYTIT 183 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHH-HHhhhhcCceEEEEe
Confidence 44444444321 111235556666777 577999999988743
No 265
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.07 E-value=0.0067 Score=50.98 Aligned_cols=98 Identities=21% Similarity=0.234 Sum_probs=68.2
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~ 181 (257)
..|+||++|.|+|..+....+. +...|...|++|-.++..+-+...++ -.+.+...|..- .+..||+|+.
T Consensus 79 rgkrVLd~gagsgLvaIAaa~a-GA~~v~a~d~~P~~~~ai~lNa~ang-----v~i~~~~~d~~g----~~~~~Dl~La 148 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARA-GAAEVVAADIDPWLEQAIRLNAAANG-----VSILFTHADLIG----SPPAFDLLLA 148 (218)
T ss_pred ccceeeecccccChHHHHHHHh-hhHHHHhcCCChHHHHHhhcchhhcc-----ceeEEeeccccC----CCcceeEEEe
Confidence 3699999999999999888875 56899999999999888888776653 467778777432 5688999775
Q ss_pred -cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 182 -DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 182 -D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
|.+-. ...+ ...+. .+++|+..|..++-
T Consensus 149 gDlfy~----~~~a---~~l~~--~~~~l~~~g~~vlv 177 (218)
T COG3897 149 GDLFYN----HTEA---DRLIP--WKDRLAEAGAAVLV 177 (218)
T ss_pred eceecC----chHH---HHHHH--HHHHHHhCCCEEEE
Confidence 44421 1111 11122 25567777766653
No 266
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.06 E-value=0.053 Score=49.54 Aligned_cols=93 Identities=24% Similarity=0.273 Sum_probs=63.0
Q ss_pred CCCCeEEEEecc-chHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE---cchHHHHhcCCCce
Q 025107 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI---NDARAELESRKESY 176 (257)
Q Consensus 101 ~~~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~---~Da~~~l~~~~~~f 176 (257)
.+.++|+++|+| .|.++.++++..+ .+|++++++++-.+.|++.-. -.++. .|..+-++ +.+
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGA----------d~~i~~~~~~~~~~~~---~~~ 230 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGA----------DHVINSSDSDALEAVK---EIA 230 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCC----------cEEEEcCCchhhHHhH---hhC
Confidence 456899999987 3446777777555 799999999999999998621 12222 33334333 349
Q ss_pred eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCC
Q 025107 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (257)
Q Consensus 177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~ 221 (257)
|+|+.-.. +. . +.. ..+.|+++|.+++-..+
T Consensus 231 d~ii~tv~-~~-----------~-~~~-~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 231 DAIIDTVG-PA-----------T-LEP-SLKALRRGGTLVLVGLP 261 (339)
T ss_pred cEEEECCC-hh-----------h-HHH-HHHHHhcCCEEEEECCC
Confidence 99997755 21 1 233 35689999999876544
No 267
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.05 E-value=0.045 Score=47.55 Aligned_cols=122 Identities=19% Similarity=0.237 Sum_probs=79.3
Q ss_pred CCCCeEEEEeccchHHHHHHHhc-CCCcEEEEEECCHH----HHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CC
Q 025107 101 PNPKTIFIMGGGEGSTAREILRH-KTVEKVVMCDIDEE----VVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RK 173 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~----vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~ 173 (257)
+...+||-||+++|.+..++... .+..-|.+||.++. .+.+|++ .+++-=+++||+.--+- .-
T Consensus 155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk----------RtNiiPIiEDArhP~KYRmlV 224 (317)
T KOG1596|consen 155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK----------RTNIIPIIEDARHPAKYRMLV 224 (317)
T ss_pred cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc----------cCCceeeeccCCCchheeeee
Confidence 45689999999999998888774 33457999999864 3444443 36777788998765432 12
Q ss_pred CceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCC---CCChHHHHHHHHHHhhh
Q 025107 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGI---FSHTEVFSCIYNTLRQV 241 (257)
Q Consensus 174 ~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~---~~~~~~~~~~~~~l~~~ 241 (257)
.-.|+||.|.+.|... +-..-. +.--||++|-+++..-+++. ......|..-.+.|++.
T Consensus 225 gmVDvIFaDvaqpdq~--------RivaLN-A~~FLk~gGhfvisikancidstv~ae~vFa~Ev~klqee 286 (317)
T KOG1596|consen 225 GMVDVIFADVAQPDQA--------RIVALN-AQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKKLQEE 286 (317)
T ss_pred eeEEEEeccCCCchhh--------hhhhhh-hhhhhccCCeEEEEEecccccccccHHHHHHHHHHHHHHh
Confidence 5789999998755321 111112 46689999977765432221 12345677777777753
No 268
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.00 E-value=0.034 Score=47.49 Aligned_cols=115 Identities=18% Similarity=0.202 Sum_probs=65.6
Q ss_pred CCCCeEEEEeccchHHHHHHH--hcCCCcEEEEEECCHHHHHHHHhhhhhcc-C--------------------------
Q 025107 101 PNPKTIFIMGGGEGSTAREIL--RHKTVEKVVMCDIDEEVVEFCKSYLVVNK-E-------------------------- 151 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~--~~~~~~~v~~VEid~~vi~~a~~~~~~~~-~-------------------------- 151 (257)
..|-.+-|-+||+|.++..+. +......|.+=|||++++++|++++.+.. +
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 457789999999999875443 33445689999999999999999875321 0
Q ss_pred -----------CCCCCCeEEEEcchHHHHh----cCCCceeEEEEcCCCC----CCCCcccCCchHHHHHHHHcCcCCCC
Q 025107 152 -----------AFSDPRLELVINDARAELE----SRKESYDVIIGDLADP----IEGGPCYKLYTKSFYEFVVKPRLNPE 212 (257)
Q Consensus 152 -----------~~~~~rv~i~~~Da~~~l~----~~~~~fDvIi~D~~~~----~~~~p~~~L~t~ef~~~~~~~~L~pg 212 (257)
.-......+...|.++.-. .....-|+|+.|.+-. |. ++...-=...++.. +...|.++
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~-g~~~~~p~~~ml~~-l~~vLp~~ 207 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQ-GEGSGGPVAQMLNS-LAPVLPER 207 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTT-S---HHHHHHHHHH-HHCCS-TT
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCccccccc-CCCCCCcHHHHHHH-HHhhCCCC
Confidence 0012346677777766432 2234469999999732 32 11001113578898 79999777
Q ss_pred cEEEE
Q 025107 213 GIFVT 217 (257)
Q Consensus 213 Gil~~ 217 (257)
+++++
T Consensus 208 sVV~v 212 (246)
T PF11599_consen 208 SVVAV 212 (246)
T ss_dssp -EEEE
T ss_pred cEEEE
Confidence 88877
No 269
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=96.00 E-value=0.033 Score=48.76 Aligned_cols=144 Identities=21% Similarity=0.285 Sum_probs=68.4
Q ss_pred HHHHHHHHHh--hcCCCCCeEEEEeccchH--H-HHHHHh-c-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEE
Q 025107 88 YHESLVHPAL--LHHPNPKTIFIMGGGEGS--T-AREILR-H-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL 160 (257)
Q Consensus 88 y~e~l~~~~l--~~~~~~~~VL~IG~G~G~--~-~~~l~~-~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i 160 (257)
|++....+.- +..|...+||.+|+|+-- . ...+++ . |..+.++-.|+++-+ .| .-..
T Consensus 45 YtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v---------------SD-a~~~ 108 (299)
T PF06460_consen 45 YTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV---------------SD-ADQS 108 (299)
T ss_dssp HHHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B----------------S-SSEE
T ss_pred HHHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc---------------cc-cCCc
Confidence 6655443321 234778899999998632 1 122222 2 444566667775443 12 2356
Q ss_pred EEcchHHHHhcCCCceeEEEEcCCCCCCCCc-----ccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHH
Q 025107 161 VINDARAELESRKESYDVIIGDLADPIEGGP-----CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY 235 (257)
Q Consensus 161 ~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p-----~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~ 235 (257)
+.+|.+.+. .+.+||+||+|.+++....- ...-+..-+..- ++..|+-||.+++...-- +| ..+ +
T Consensus 109 ~~~Dc~t~~--~~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~-i~~kLaLGGSvaiKiTE~-Sw-~~~-----L 178 (299)
T PF06460_consen 109 IVGDCRTYM--PPDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGF-IKEKLALGGSVAIKITEH-SW-NAQ-----L 178 (299)
T ss_dssp EES-GGGEE--ESS-EEEEEE----TTS-SS-S------THHHHHHHH-HHHHEEEEEEEEEEE-SS-S---HH-----H
T ss_pred eeccccccC--CCCcccEEEEecccccccccccccCCccccHHHHHHH-HHhhhhcCceEEEEeecc-cc-cHH-----H
Confidence 778887774 45899999999996432110 011222222332 578999999999876322 13 222 2
Q ss_pred HHHhhhCCceEEEee-----cCccccC
Q 025107 236 NTLRQVFKCGCCALF-----SSYSFFC 257 (257)
Q Consensus 236 ~~l~~~F~~v~~~~~-----~~~~~~~ 257 (257)
-.|.+.|.....|-+ +|+.|+|
T Consensus 179 yel~~~F~~wt~FcT~VNtSSSEaFLi 205 (299)
T PF06460_consen 179 YELMGYFSWWTCFCTAVNTSSSEAFLI 205 (299)
T ss_dssp HHHHTTEEEEEEEEEGGGTTSS-EEEE
T ss_pred HHHHhhcccEEEEecccCccccceeEE
Confidence 346777888887766 5555543
No 270
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=95.99 E-value=0.099 Score=46.18 Aligned_cols=129 Identities=16% Similarity=0.183 Sum_probs=69.0
Q ss_pred CCCeEEEEeccchH--HHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH---Hhc----
Q 025107 102 NPKTIFIMGGGEGS--TAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---LES---- 171 (257)
Q Consensus 102 ~~~~VL~IG~G~G~--~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~---l~~---- 171 (257)
.-+..||||||-=+ ...++++. .+..+|..||.||.++.-+|..+.-+ ...+..++.+|.++- +..
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~----~~g~t~~v~aD~r~p~~iL~~p~~~ 143 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN----PRGRTAYVQADLRDPEAILAHPEVR 143 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-----TTSEEEEEE--TT-HHHHHCSHHHH
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC----CCccEEEEeCCCCCHHHHhcCHHHH
Confidence 45789999999654 45666552 34589999999999999999876533 112489999998763 221
Q ss_pred ----CCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025107 172 ----RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (257)
Q Consensus 172 ----~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (257)
..++.=++++........ .---.+.++. +++.|.||..+++...+.. ..+...+.+.+.+++.
T Consensus 144 ~~lD~~rPVavll~~vLh~v~D----~~dp~~iv~~-l~d~lapGS~L~ish~t~d--~~p~~~~~~~~~~~~~ 210 (267)
T PF04672_consen 144 GLLDFDRPVAVLLVAVLHFVPD----DDDPAGIVAR-LRDALAPGSYLAISHATDD--GAPERAEALEAVYAQA 210 (267)
T ss_dssp CC--TTS--EEEECT-GGGS-C----GCTHHHHHHH-HHCCS-TT-EEEEEEEB-T--TSHHHHHHHHHHHHHC
T ss_pred hcCCCCCCeeeeeeeeeccCCC----ccCHHHHHHH-HHHhCCCCceEEEEecCCC--CCHHHHHHHHHHHHcC
Confidence 123344555554321100 0112577888 7999999999988654432 2344444455555544
No 271
>PTZ00357 methyltransferase; Provisional
Probab=95.98 E-value=0.026 Score=55.67 Aligned_cols=104 Identities=18% Similarity=0.316 Sum_probs=64.4
Q ss_pred eEEEEeccchHHHHHHHhc----CCCcEEEEEECCHHHHHHHHhhhhhccCCC------CCCCeEEEEcchHHHHhcC--
Q 025107 105 TIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAF------SDPRLELVINDARAELESR-- 172 (257)
Q Consensus 105 ~VL~IG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~~~~~~~~~~------~~~rv~i~~~Da~~~l~~~-- 172 (257)
.|+++|+|-|-+....++. .-..+|.+||.||..+...+.... +...| .+.+|+++..|.|.|-...
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~-N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWA-NDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHh-cccccccccccCCCeEEEEeCccccccccccc
Confidence 5899999999987766652 112489999999664433333321 11123 2468999999999984221
Q ss_pred --------CCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCC----CcE
Q 025107 173 --------KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNP----EGI 214 (257)
Q Consensus 173 --------~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~p----gGi 214 (257)
-++.|+||+.+-....+ .+| +.|-+.- +.+.||+ +||
T Consensus 782 ~s~~~P~~~gKaDIVVSELLGSFGD---NEL-SPECLDG-aQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSELLGSLGD---NEL-SPECLEA-FHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHhhhccccc---ccC-CHHHHHH-HHHhhhhhcccccc
Confidence 13799999987543311 122 4555555 4556665 665
No 272
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.97 E-value=0.02 Score=51.68 Aligned_cols=78 Identities=22% Similarity=0.175 Sum_probs=55.7
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH---HhcC--CCce
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE---LESR--KESY 176 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~---l~~~--~~~f 176 (257)
+....+|.=.|.|+-+..+++..+..+++++|.||++++.|++.+... ++|+.+++++..++ +... ..++
T Consensus 20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-----~~r~~~~~~~F~~l~~~l~~~~~~~~~ 94 (310)
T PF01795_consen 20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-----DDRFIFIHGNFSNLDEYLKELNGINKV 94 (310)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-----CTTEEEEES-GGGHHHHHHHTTTTS-E
T ss_pred CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-----cceEEEEeccHHHHHHHHHHccCCCcc
Confidence 445788988899999999997644489999999999999999876522 57999999887554 3333 3689
Q ss_pred eEEEEcCC
Q 025107 177 DVIIGDLA 184 (257)
Q Consensus 177 DvIi~D~~ 184 (257)
|.|+.|+-
T Consensus 95 dgiL~DLG 102 (310)
T PF01795_consen 95 DGILFDLG 102 (310)
T ss_dssp EEEEEE-S
T ss_pred CEEEEccc
Confidence 99999984
No 273
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=95.64 E-value=0.039 Score=48.46 Aligned_cols=85 Identities=26% Similarity=0.308 Sum_probs=56.5
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
+...-|-|+|||.+-++. ... ..|...|+- ..+-+++.-|.++ +.-.+++.|+++
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~~--~kV~SfDL~-------------------a~~~~V~~cDm~~-vPl~d~svDvaV 233 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SER--HKVHSFDLV-------------------AVNERVIACDMRN-VPLEDESVDVAV 233 (325)
T ss_pred cCceEEEecccchhhhhh---ccc--cceeeeeee-------------------cCCCceeeccccC-CcCccCcccEEE
Confidence 445568889999998886 211 356666662 1223455566655 444568899988
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
..+.-- +. .+ .+|+.+ +.|+|++||.+.+-
T Consensus 234 ~CLSLM---gt--n~--~df~kE-a~RiLk~gG~l~IA 263 (325)
T KOG3045|consen 234 FCLSLM---GT--NL--ADFIKE-ANRILKPGGLLYIA 263 (325)
T ss_pred eeHhhh---cc--cH--HHHHHH-HHHHhccCceEEEE
Confidence 877531 11 22 489999 89999999988764
No 274
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.38 E-value=0.19 Score=48.57 Aligned_cols=108 Identities=19% Similarity=0.214 Sum_probs=62.2
Q ss_pred CCCeEEEEeccchHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhcc---CCCCCC-C----eEEEEcchH----HH
Q 025107 102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK---EAFSDP-R----LELVINDAR----AE 168 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~---~~~~~~-r----v~i~~~Da~----~~ 168 (257)
.+.+|+++|+|.=++ +...++..+. +|+++|.+++..+.+++. +... +..++. . .+-.-.|.. +.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 589999999997654 5556666664 899999999999999984 2110 000000 0 000111211 11
Q ss_pred HhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 169 l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
+.+..+.+|+||.-...|.. +...+.+. + +-+.++|||+++.-
T Consensus 242 ~~~~~~gaDVVIetag~pg~--~aP~lit~----~-~v~~mkpGgvIVdv 284 (509)
T PRK09424 242 FAEQAKEVDIIITTALIPGK--PAPKLITA----E-MVASMKPGSVIVDL 284 (509)
T ss_pred HHhccCCCCEEEECCCCCcc--cCcchHHH----H-HHHhcCCCCEEEEE
Confidence 11112469999988765432 22234344 4 35578899988754
No 275
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.26 E-value=0.16 Score=46.53 Aligned_cols=98 Identities=22% Similarity=0.272 Sum_probs=65.6
Q ss_pred CCeEEEEeccchH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH-hcCC-CceeEE
Q 025107 103 PKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL-ESRK-ESYDVI 179 (257)
Q Consensus 103 ~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l-~~~~-~~fDvI 179 (257)
..+|+++|+|.=+ ++..+++..+..+|+++|++++=+++|++++..... .++.-+ |....+ ..+. ..+|++
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~--~~~~~~----~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVV--VNPSED----DAGAEILELTGGRGADVV 242 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEe--ecCccc----cHHHHHHHHhCCCCCCEE
Confidence 3489999999755 456777777788999999999999999997643210 111111 333333 2233 469999
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
|--.- +...+.. +-+.++|+|.+++-.
T Consensus 243 ie~~G------------~~~~~~~-ai~~~r~gG~v~~vG 269 (350)
T COG1063 243 IEAVG------------SPPALDQ-ALEALRPGGTVVVVG 269 (350)
T ss_pred EECCC------------CHHHHHH-HHHHhcCCCEEEEEe
Confidence 85432 2235666 578999999988764
No 276
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=95.20 E-value=0.16 Score=44.47 Aligned_cols=123 Identities=15% Similarity=0.161 Sum_probs=69.6
Q ss_pred EEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---CCCceeEEEEcC
Q 025107 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDVIIGDL 183 (257)
Q Consensus 107 L~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~---~~~~fDvIi~D~ 183 (257)
|..=.|+=.+++.+++. ..+.+.+|+.|.-.+..+++|. .++++++++.|+.+-++. +.++=-+|++|+
T Consensus 62 l~~YPGSP~ia~~llR~--qDrl~l~ELHp~d~~~L~~~~~------~~~~v~v~~~DG~~~l~allPP~~rRglVLIDP 133 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLRE--QDRLVLFELHPQDFEALKKNFR------RDRRVRVHHRDGYEGLKALLPPPERRGLVLIDP 133 (245)
T ss_dssp --EEE-HHHHHHHHS-T--TSEEEEE--SHHHHHHHTTS--------TTS-EEEE-S-HHHHHHHH-S-TTS-EEEEE--
T ss_pred cCcCCCCHHHHHHhCCc--cceEEEEecCchHHHHHHHHhc------cCCccEEEeCchhhhhhhhCCCCCCCeEEEECC
Confidence 44445666788888773 4699999999999999998875 357999999999998875 346678999998
Q ss_pred CCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh-CCceE
Q 025107 184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV-FKCGC 246 (257)
Q Consensus 184 ~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~ 246 (257)
+-.. +...---.+.+.. +.++- +.|+++++- | .........+.+.|++. .+.+.
T Consensus 134 pYE~---~~dy~~v~~~l~~-a~kR~-~~G~~~iWY--P--i~~~~~~~~~~~~l~~~~~~~~l 188 (245)
T PF04378_consen 134 PYEQ---KDDYQRVVDALAK-ALKRW-PTGVYAIWY--P--IKDRERVDRFLRALKALGIKKVL 188 (245)
T ss_dssp ---S---TTHHHHHHHHHHH-HHHH--TTSEEEEEE--E--ESSHHHHHHHHHHHHHH-SSE-E
T ss_pred CCCC---chHHHHHHHHHHH-HHHhc-CCcEEEEEe--e--cccHHHHHHHHHHHHhcCCCCeE
Confidence 5211 1111112233443 23333 478888875 3 34566677888888865 44443
No 277
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.18 E-value=0.14 Score=46.42 Aligned_cols=97 Identities=15% Similarity=0.206 Sum_probs=58.0
Q ss_pred CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
+.++||++|+|+ |.++.++++..+..+|++++.+++-.+.+++. .... -+.....|..+..+. .+.+|+|+
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-Ga~~------vi~~~~~~~~~~~~~-~g~~D~vi 240 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-GADK------LVNPQNDDLDHYKAE-KGYFDVSF 240 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-CCcE------EecCCcccHHHHhcc-CCCCCEEE
Confidence 467899998742 22455666666666899999999999999874 2110 000011233333332 24589887
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
-. .. . ...++. +.+.|+++|.++.-.
T Consensus 241 d~-~G----~-------~~~~~~-~~~~l~~~G~iv~~G 266 (343)
T PRK09880 241 EV-SG----H-------PSSINT-CLEVTRAKGVMVQVG 266 (343)
T ss_pred EC-CC----C-------HHHHHH-HHHHhhcCCEEEEEc
Confidence 43 21 1 123445 467899999988643
No 278
>PRK13699 putative methylase; Provisional
Probab=95.12 E-value=0.045 Score=47.28 Aligned_cols=60 Identities=10% Similarity=0.155 Sum_probs=42.0
Q ss_pred EEEEcchHHHHhcC-CCceeEEEEcCCCCC--CC--C-c-ccC---CchHHHHHHHHcCcCCCCcEEEEec
Q 025107 159 ELVINDARAELESR-KESYDVIIGDLADPI--EG--G-P-CYK---LYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 159 ~i~~~Da~~~l~~~-~~~fDvIi~D~~~~~--~~--~-p-~~~---L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
+++++|+++.++.. ++..|+|+.|||-.. .. + . ... -+..+++.+ ++++|||||.+++..
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E-~~RVLKpgg~l~if~ 72 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNE-MYRVLKKDALMVSFY 72 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHH-HHHHcCCCCEEEEEe
Confidence 68899999999774 588999999987321 00 0 0 001 123467788 689999999998754
No 279
>PHA01634 hypothetical protein
Probab=95.06 E-value=0.082 Score=41.60 Aligned_cols=76 Identities=20% Similarity=0.182 Sum_probs=54.8
Q ss_pred CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025107 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
.-..++|++||++-|..+..++-. ++++|.++|.+|...+..++....+.- -|.-+ .. + +| ...-+.||+-
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~k~nnI--~DK~v-~~-~---eW-~~~Y~~~Di~ 96 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLR-GASFVVQYEKEEKLRKKWEEVCAYFNI--CDKAV-MK-G---EW-NGEYEDVDIF 96 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhc-CccEEEEeccCHHHHHHHHHHhhhhee--eecee-ec-c---cc-cccCCCcceE
Confidence 457899999999999999988874 678999999999999999997765420 11111 11 1 12 1234789999
Q ss_pred EEcCC
Q 025107 180 IGDLA 184 (257)
Q Consensus 180 i~D~~ 184 (257)
.+|--
T Consensus 97 ~iDCe 101 (156)
T PHA01634 97 VMDCE 101 (156)
T ss_pred EEEcc
Confidence 99864
No 280
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.06 E-value=0.058 Score=43.64 Aligned_cols=131 Identities=21% Similarity=0.252 Sum_probs=73.2
Q ss_pred eEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh----ccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV----NKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 105 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~----~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
+|.+||+|.++.+....-.....+|+....+++.++..++.-.. ++.. ..+++. ...|..+.++ .-|+|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~-l~~~i~-~t~dl~~a~~----~ad~Ii 74 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIK-LPENIK-ATTDLEEALE----DADIII 74 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSB-EETTEE-EESSHHHHHT----T-SEEE
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcc-cCcccc-cccCHHHHhC----cccEEE
Confidence 58899999998764433222236899999999888877764321 1100 113444 3567666663 469999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeecCccc
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSYSF 255 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~~~~ 255 (257)
+-.+. ..-++++++ ++..|+++-.++.-.. + + .......+.+.+++.++.-.....++|+|
T Consensus 75 iavPs---------~~~~~~~~~-l~~~l~~~~~ii~~~K--G-~-~~~~~~~~~~~i~~~~~~~~~~~lsGP~~ 135 (157)
T PF01210_consen 75 IAVPS---------QAHREVLEQ-LAPYLKKGQIIISATK--G-F-EPGTLLLLSEVIEEILPIPRIAVLSGPSF 135 (157)
T ss_dssp E-S-G---------GGHHHHHHH-HTTTSHTT-EEEETS---S-E-ETTEEEEHHHHHHHHHSSCGEEEEESS--
T ss_pred ecccH---------HHHHHHHHH-HhhccCCCCEEEEecC--C-c-ccCCCccHHHHHHHHhhhcceEEeeCccH
Confidence 87542 234789999 7999977766664321 1 1 11112233344555555444555566655
No 281
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.04 E-value=0.17 Score=46.68 Aligned_cols=110 Identities=19% Similarity=0.159 Sum_probs=65.7
Q ss_pred CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcc-hHHHHhc-C-CCcee
Q 025107 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND-ARAELES-R-KESYD 177 (257)
Q Consensus 102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~D-a~~~l~~-~-~~~fD 177 (257)
+..+||++|+|. |..+..+++..+..++++++.+++..+.++++... ..+.....| ..+.+.. . .+.+|
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~-------~vi~~~~~~~~~~~l~~~~~~~~~D 256 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA-------ETINFEEVDDVVEALRELTGGRGPD 256 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc-------EEEcCCcchHHHHHHHHHcCCCCCC
Confidence 457899999887 77788888876655799999999999999986421 111222222 3333332 2 24699
Q ss_pred EEEEcCCCCCCCCcccC---------CchHHHHHHHHcCcCCCCcEEEEec
Q 025107 178 VIIGDLADPIEGGPCYK---------LYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 178 vIi~D~~~~~~~~p~~~---------L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
+|+--........+..+ --+...+.. +.+.|+++|.++.-.
T Consensus 257 ~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~G~iv~~g 306 (386)
T cd08283 257 VCIDAVGMEAHGSPLHKAEQALLKLETDRPDALRE-AIQAVRKGGTVSIIG 306 (386)
T ss_pred EEEECCCCcccccccccccccccccccCchHHHHH-HHHHhccCCEEEEEc
Confidence 88764321100000000 012344566 577899999888653
No 282
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=94.96 E-value=0.18 Score=44.84 Aligned_cols=122 Identities=20% Similarity=0.248 Sum_probs=76.2
Q ss_pred eEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCC-ceeEEEEcC
Q 025107 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKE-SYDVIIGDL 183 (257)
Q Consensus 105 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~-~fDvIi~D~ 183 (257)
+++++-+|.|++..-+.+. +...+.++|+|+...+.-+.+++ ....+|..+.-...-. ..|+++.-+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a-g~~~~~a~e~~~~a~~~y~~N~~-----------~~~~~Di~~~~~~~l~~~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA-GFEVVWAVEIDPDACETYKANFP-----------EVICGDITEIDPSDLPKDVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT-TEEEEEEEESSHHHHHHHHHHHT-----------EEEESHGGGCHHHHHHHT-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhc-CcEEEEEeecCHHHHHhhhhccc-----------ccccccccccccccccccceEEEecc
Confidence 6899999999998887774 46688999999999999998874 5677787665433112 599999887
Q ss_pred CC-CCC-C-------CcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025107 184 AD-PIE-G-------GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (257)
Q Consensus 184 ~~-~~~-~-------~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (257)
+- +.+ . .+...|+ .++++. + +.++|.-+++=|+..-........+..+.+.|.+.
T Consensus 70 PCQ~fS~ag~~~~~~d~r~~L~-~~~~~~-v-~~~~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~l 133 (335)
T PF00145_consen 70 PCQGFSIAGKRKGFDDPRNSLF-FEFLRI-V-KELKPKYFLLENVPGLLSSKNGEVFKEILEELEEL 133 (335)
T ss_dssp --TTTSTTSTHHCCCCHTTSHH-HHHHHH-H-HHHS-SEEEEEEEGGGGTGGGHHHHHHHHHHHHHT
T ss_pred CCceEeccccccccccccchhh-HHHHHH-H-hhccceEEEecccceeecccccccccccccccccc
Confidence 62 211 1 1112233 467775 3 56889887776652211011235677888888764
No 283
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.89 E-value=0.23 Score=44.83 Aligned_cols=98 Identities=21% Similarity=0.378 Sum_probs=66.4
Q ss_pred CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.+.+|.+||+|. |.-+..++---+ +.|+.+|+|.+-++.....|. .|++.+.....++ +..-.++|++|
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glg-A~Vtild~n~~rl~~ldd~f~--------~rv~~~~st~~~i-ee~v~~aDlvI 236 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLG-ADVTILDLNIDRLRQLDDLFG--------GRVHTLYSTPSNI-EEAVKKADLVI 236 (371)
T ss_pred CCccEEEECCccccchHHHHHhccC-CeeEEEecCHHHHhhhhHhhC--------ceeEEEEcCHHHH-HHHhhhccEEE
Confidence 356888998875 334444444333 699999999888877766552 4788887776654 33347899999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEE
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~ 216 (257)
...--|....| .|.+++.. +.|+||++++
T Consensus 237 gaVLIpgakaP--kLvt~e~v-----k~MkpGsViv 265 (371)
T COG0686 237 GAVLIPGAKAP--KLVTREMV-----KQMKPGSVIV 265 (371)
T ss_pred EEEEecCCCCc--eehhHHHH-----HhcCCCcEEE
Confidence 87654443344 67766643 4588999886
No 284
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=94.81 E-value=0.053 Score=48.06 Aligned_cols=79 Identities=24% Similarity=0.376 Sum_probs=56.2
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCceeEEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII 180 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fDvIi 180 (257)
..++|+++|=-+-.....++.. -.++|.+||||+..+..-++...-. .-.+++.+.=|.++-+.+ ...+||+++
T Consensus 152 ~gK~I~vvGDDDLtsia~aLt~-mpk~iaVvDIDERli~fi~k~aee~----g~~~ie~~~~Dlr~plpe~~~~kFDvfi 226 (354)
T COG1568 152 EGKEIFVVGDDDLTSIALALTG-MPKRIAVVDIDERLIKFIEKVAEEL----GYNNIEAFVFDLRNPLPEDLKRKFDVFI 226 (354)
T ss_pred CCCeEEEEcCchhhHHHHHhcC-CCceEEEEechHHHHHHHHHHHHHh----CccchhheeehhcccChHHHHhhCCeee
Confidence 4689999995444433333332 2479999999999999988876532 234677788888776643 347899999
Q ss_pred EcCCC
Q 025107 181 GDLAD 185 (257)
Q Consensus 181 ~D~~~ 185 (257)
.||+.
T Consensus 227 TDPpe 231 (354)
T COG1568 227 TDPPE 231 (354)
T ss_pred cCchh
Confidence 99874
No 285
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.76 E-value=0.13 Score=44.40 Aligned_cols=126 Identities=23% Similarity=0.267 Sum_probs=78.2
Q ss_pred CCCeEEEEeccchHHHHHHHhc-----C-CCc---EEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchH------
Q 025107 102 NPKTIFIMGGGEGSTAREILRH-----K-TVE---KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR------ 166 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~-----~-~~~---~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~------ 166 (257)
.-++|++++...|+.+..+.+. + ..+ .|++||+.|.+ +. +.|.-+.+|..
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--------PI-------~GV~qlq~DIT~~stae 105 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--------PI-------EGVIQLQGDITSASTAE 105 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------cc-------CceEEeecccCCHhHHH
Confidence 3579999999999987776652 1 112 39999997765 22 34555555542
Q ss_pred HHHhc-CCCceeEEEEcCCCCCCCCccc--CCch----HHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHh
Q 025107 167 AELES-RKESYDVIIGDLADPIEGGPCY--KLYT----KSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLR 239 (257)
Q Consensus 167 ~~l~~-~~~~fDvIi~D~~~~~~~~p~~--~L~t----~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~ 239 (257)
..++- .+++-|+|++|...... +.+. +... ...+.. ...+|+|||.++... .+.+...-++..|+
T Consensus 106 ~Ii~hfggekAdlVvcDGAPDvT-GlHd~DEy~Q~qLllaAl~i-~t~Vlk~Gg~FVaKi------fRg~~tslLysql~ 177 (294)
T KOG1099|consen 106 AIIEHFGGEKADLVVCDGAPDVT-GLHDLDEYVQAQLLLAALNI-ATCVLKPGGSFVAKI------FRGRDTSLLYSQLR 177 (294)
T ss_pred HHHHHhCCCCccEEEeCCCCCcc-ccccHHHHHHHHHHHHHHHH-HhheecCCCeeehhh------hccCchHHHHHHHH
Confidence 22322 24689999999753221 2210 0011 122332 357999999999753 23344557788899
Q ss_pred hhCCceEEEee
Q 025107 240 QVFKCGCCALF 250 (257)
Q Consensus 240 ~~F~~v~~~~~ 250 (257)
..|+.|..+.-
T Consensus 178 ~ff~kv~~~KP 188 (294)
T KOG1099|consen 178 KFFKKVTCAKP 188 (294)
T ss_pred HHhhceeeecC
Confidence 99999887654
No 286
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=94.73 E-value=0.036 Score=48.55 Aligned_cols=111 Identities=16% Similarity=0.135 Sum_probs=78.9
Q ss_pred CeEEEEeccchHHHHHHHhc----C--------CCcEEEEEECCHHHHHHHHhh--hhh------------c-------c
Q 025107 104 KTIFIMGGGEGSTAREILRH----K--------TVEKVVMCDIDEEVVEFCKSY--LVV------------N-------K 150 (257)
Q Consensus 104 ~~VL~IG~G~G~~~~~l~~~----~--------~~~~v~~VEid~~vi~~a~~~--~~~------------~-------~ 150 (257)
-.|+++|.|+|.....+.+. . ...+++.+|.+|......+.. .+. . .
T Consensus 60 ~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~r 139 (252)
T COG4121 60 LQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCAA 139 (252)
T ss_pred eeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhHH
Confidence 46888999999976665542 1 223678889888655443321 000 0 0
Q ss_pred CCC-CCCCeEEEEcchHHHHhcCCC---ceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 151 EAF-SDPRLELVINDARAELESRKE---SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 151 ~~~-~~~rv~i~~~Da~~~l~~~~~---~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
..+ ..-++.++++|+++.+..... ++|+.+.|.|.|.. .| .+++.|++.. ++++.+|||.+++.
T Consensus 140 ~~~~g~~~l~l~~gd~~~~~p~~~~~~~~~dAwflDgFsP~k-NP--~mW~~e~l~~-~a~~~~~~~~l~t~ 207 (252)
T COG4121 140 AVRHGLLLLGLVIGDAGDGIPPVPRRRPGTDAWFLDGFRPVK-NP--EMWEDELLNL-MARIPYRDPTLATF 207 (252)
T ss_pred hhhcchheeeeeeeehhhcCCcccccccCccEEecCCccccC-Ch--hhccHHHHHH-HHhhcCCCCceech
Confidence 011 234668899999999877665 79999999998763 44 7899999999 89999999999874
No 287
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.63 E-value=0.34 Score=44.88 Aligned_cols=98 Identities=24% Similarity=0.407 Sum_probs=55.3
Q ss_pred CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.+.+|+++|+|. |..+...++..+. +|+++|.+++-.+.+.+.+.. .+.....+. +.+.+.-..+|+||
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~--------~v~~~~~~~-~~l~~~l~~aDvVI 235 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGG--------RIHTRYSNA-YEIEDAVKRADLLI 235 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCc--------eeEeccCCH-HHHHHHHccCCEEE
Confidence 567899999973 3344444554454 799999998876665543321 111111221 22222224689999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEE
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~ 216 (257)
....-+....| .+.+.+.++ .++|+++++
T Consensus 236 ~a~~~~g~~~p--~lit~~~l~-----~mk~g~vIv 264 (370)
T TIGR00518 236 GAVLIPGAKAP--KLVSNSLVA-----QMKPGAVIV 264 (370)
T ss_pred EccccCCCCCC--cCcCHHHHh-----cCCCCCEEE
Confidence 87643221123 466666554 367887766
No 288
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=94.62 E-value=0.031 Score=52.35 Aligned_cols=78 Identities=13% Similarity=0.256 Sum_probs=52.5
Q ss_pred CeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcC
Q 025107 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDL 183 (257)
Q Consensus 104 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~ 183 (257)
--||+||.|+|.++..+.+. +...||++|.-..+.+.||+-...++ -..+++++..--.+.-.....+-|+++...
T Consensus 68 v~vLdigtGTGLLSmMAvra-gaD~vtA~EvfkPM~d~arkI~~kng---~SdkI~vInkrStev~vg~~~RadI~v~e~ 143 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRA-GADSVTACEVFKPMVDLARKIMHKNG---MSDKINVINKRSTEVKVGGSSRADIAVRED 143 (636)
T ss_pred EEEEEccCCccHHHHHHHHh-cCCeEEeehhhchHHHHHHHHHhcCC---CccceeeeccccceeeecCcchhhhhhHhh
Confidence 35899999999999888885 46789999999999999999776543 235666665422111001113456665555
Q ss_pred CC
Q 025107 184 AD 185 (257)
Q Consensus 184 ~~ 185 (257)
++
T Consensus 144 fd 145 (636)
T KOG1501|consen 144 FD 145 (636)
T ss_pred hh
Confidence 54
No 289
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.55 E-value=0.19 Score=45.58 Aligned_cols=101 Identities=13% Similarity=0.115 Sum_probs=63.1
Q ss_pred CCCCeEEEEeccchH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC--CCcee
Q 025107 101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR--KESYD 177 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~--~~~fD 177 (257)
....+||++|+|.=+ .+...++..+..+|.++|+++.-+++||+ |+...- ....+-. ...+.++-++.. ...+|
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~-~~~~~~~-~~~~~~~~v~~~~g~~~~d 244 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVT-DPSSHKS-SPQELAELVEKALGKKQPD 244 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEE-eeccccc-cHHHHHHHHHhhccccCCC
Confidence 346899999999644 45555666778899999999999999999 543210 0011111 234444545432 24588
Q ss_pred EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025107 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (257)
Q Consensus 178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~ 217 (257)
+.|--.-. .+ -++. .-..|+.+|.+++
T Consensus 245 ~~~dCsG~----~~--------~~~a-ai~a~r~gGt~vl 271 (354)
T KOG0024|consen 245 VTFDCSGA----EV--------TIRA-AIKATRSGGTVVL 271 (354)
T ss_pred eEEEccCc----hH--------HHHH-HHHHhccCCEEEE
Confidence 88754321 11 2344 4568999998554
No 290
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=94.41 E-value=0.036 Score=47.63 Aligned_cols=61 Identities=16% Similarity=0.263 Sum_probs=49.1
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE 168 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~ 168 (257)
...-|..||-|.|++++.++.. +..+..+||+|+..+.-.+...+. .+.+..+|++|+..|
T Consensus 50 ~~~~v~eIgPgpggitR~il~a-~~~RL~vVE~D~RFip~LQ~L~EA-----a~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNA-DVARLLVVEKDTRFIPGLQMLSEA-----APGKLRIHHGDVLRF 110 (326)
T ss_pred ccceeEEecCCCCchhHHHHhc-chhheeeeeeccccChHHHHHhhc-----CCcceEEecccccee
Confidence 3467999999999999999985 578999999999988776654332 245899999998665
No 291
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.30 E-value=0.45 Score=45.95 Aligned_cols=106 Identities=20% Similarity=0.241 Sum_probs=60.9
Q ss_pred CCCeEEEEeccchHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCC--------CCCCeEEEEcchHHH----
Q 025107 102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAF--------SDPRLELVINDARAE---- 168 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~--------~~~rv~i~~~Da~~~---- 168 (257)
++.+||++|+|.=+. +..+++..+ .+|+++|.+++..+.+++. +...-.. .+.-.+..-.|..+.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lG-A~V~v~d~~~~rle~a~~l-Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLG-AIVRAFDTRPEVKEQVQSM-GAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 468999999987654 444555445 4799999999999988873 2110000 000011111221111
Q ss_pred HhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEE
Q 025107 169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (257)
Q Consensus 169 l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~ 216 (257)
+.+.-+.+|+||....-|. .+...|.+++..+ .+|||++++
T Consensus 241 ~~e~~~~~DIVI~TalipG--~~aP~Lit~emv~-----~MKpGsvIV 281 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPG--KPAPKLITEEMVD-----SMKAGSVIV 281 (511)
T ss_pred HHHHhCCCCEEEECcccCC--CCCCeeehHHHHh-----hCCCCCEEE
Confidence 1222367999988775443 2223677776544 578888766
No 292
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.27 E-value=0.55 Score=42.48 Aligned_cols=120 Identities=14% Similarity=0.211 Sum_probs=73.7
Q ss_pred EEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC
Q 025107 106 IFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD 185 (257)
Q Consensus 106 VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~ 185 (257)
|+++-||.|++..-+.+. +...+.++|+|+...+..+.+++. .++.+|..+.-...-...|+++..++-
T Consensus 1 vidLF~G~GG~~~Gl~~a-G~~~~~a~e~~~~a~~ty~~N~~~----------~~~~~Di~~~~~~~~~~~dvl~gg~PC 69 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-GFKCVFASEIDKYAQKTYEANFGN----------KVPFGDITKISPSDIPDFDILLGGFPC 69 (315)
T ss_pred CEEEecCccHHHHHHHHc-CCeEEEEEeCCHHHHHHHHHhCCC----------CCCccChhhhhhhhCCCcCEEEecCCC
Confidence 578999999988777653 555677899999999999987641 344577766543223468999988762
Q ss_pred -CCC-C-------CcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCC--CChHHHHHHHHHHhhh
Q 025107 186 -PIE-G-------GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIF--SHTEVFSCIYNTLRQV 241 (257)
Q Consensus 186 -~~~-~-------~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~--~~~~~~~~~~~~l~~~ 241 (257)
+.+ . .+...| -.++++. + +.++|.=+++=|. ++.. ...+.+..+.+.|+..
T Consensus 70 q~fS~ag~~~~~~d~r~~L-~~~~~r~-i-~~~~P~~~v~ENV--~~l~~~~~~~~~~~i~~~l~~~ 131 (315)
T TIGR00675 70 QPFSIAGKRKGFEDTRGTL-FFEIVRI-L-KEKKPKFFLLENV--KGLVSHDKGRTFKVIIETLEEL 131 (315)
T ss_pred cccchhcccCCCCCchhhH-HHHHHHH-H-hhcCCCEEEeecc--HHHHhcccchHHHHHHHHHHhC
Confidence 111 0 111122 2466665 3 4678875555443 2111 1234566777777654
No 293
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=94.25 E-value=0.56 Score=41.02 Aligned_cols=118 Identities=14% Similarity=0.170 Sum_probs=84.8
Q ss_pred EEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---CCCceeEEEEcC
Q 025107 107 FIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKESYDVIIGDL 183 (257)
Q Consensus 107 L~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~---~~~~fDvIi~D~ 183 (257)
|-.=+|+=-+++.+++. ..++...|+.|.=....++.|. .+.|+++..+|++.-++. .+++=-+|++|+
T Consensus 93 l~~YpGSP~lA~~llR~--qDRl~l~ELHp~D~~~L~~~f~------~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDP 164 (279)
T COG2961 93 LRYYPGSPLLARQLLRE--QDRLVLTELHPSDAPLLRNNFA------GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDP 164 (279)
T ss_pred cccCCCCHHHHHHHcch--hceeeeeecCccHHHHHHHHhC------CCcceEEEecCcHHHHhhhCCCCCcceEEEeCC
Confidence 66677888899999884 3699999999999999999886 368999999999998876 346688999998
Q ss_pred CCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhh
Q 025107 184 ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQV 241 (257)
Q Consensus 184 ~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (257)
+-.. ....--..+.+++ ..++. ++|+++++- | ....+..+++.+.|++.
T Consensus 165 PfE~---~~eY~rvv~~l~~-~~kRf-~~g~yaiWY--P--ik~r~~~~~f~~~L~~~ 213 (279)
T COG2961 165 PFEL---KDEYQRVVEALAE-AYKRF-ATGTYAIWY--P--IKDRRQIRRFLRALEAL 213 (279)
T ss_pred Cccc---ccHHHHHHHHHHH-HHHhh-cCceEEEEE--e--ecchHHHHHHHHHHhhc
Confidence 6321 1011112344444 33333 378888874 3 34566777888888875
No 294
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=94.15 E-value=0.38 Score=45.78 Aligned_cols=106 Identities=18% Similarity=0.235 Sum_probs=71.4
Q ss_pred eEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCC
Q 025107 105 TIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA 184 (257)
Q Consensus 105 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~ 184 (257)
++|.+|||.=-+...+.+- +...|+.+|+++.+++.....-.. ..+-.++...|...-. -..+.||+|+.=.+
T Consensus 51 ~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~~~-----~~~~~~~~~~d~~~l~-fedESFdiVIdkGt 123 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRNAK-----ERPEMQMVEMDMDQLV-FEDESFDIVIDKGT 123 (482)
T ss_pred eeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhcccc-----CCcceEEEEecchhcc-CCCcceeEEEecCc
Confidence 7999999998888877774 567899999999999887754321 3467788888865543 34688999886443
Q ss_pred CCCCCCcccCCc----hHHHHHHHHcCcCCCCcEEEEe
Q 025107 185 DPIEGGPCYKLY----TKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 185 ~~~~~~p~~~L~----t~ef~~~~~~~~L~pgGil~~~ 218 (257)
......+...++ -...+.. +.+.|+++|+++.-
T Consensus 124 lDal~~de~a~~~~~~v~~~~~e-Vsrvl~~~gk~~sv 160 (482)
T KOG2352|consen 124 LDALFEDEDALLNTAHVSNMLDE-VSRVLAPGGKYISV 160 (482)
T ss_pred cccccCCchhhhhhHHhhHHHhh-HHHHhccCCEEEEE
Confidence 211111111222 2245566 68999999986543
No 295
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.98 E-value=0.09 Score=48.12 Aligned_cols=110 Identities=18% Similarity=0.161 Sum_probs=62.0
Q ss_pred CCCeEEEEeccchHHHHHHHh-cCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 102 NPKTIFIMGGGEGSTAREILR-HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.|+++||+|.|.|..+..+.. .|...+++.+|.+|.+-++...-.........+-|..=+..|-.. + ...+.|++|+
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~-l-p~ad~ytl~i 190 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLS-L-PAADLYTLAI 190 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccC-C-Cccceeehhh
Confidence 588999999999988776655 355678999999998766654432211000011122222222111 1 1236688766
Q ss_pred Ec-CCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 181 GD-LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 181 ~D-~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
+- ---+. +....++ ..++. +-..++|||.+++-
T Consensus 191 ~~~eLl~d--~~ek~i~--~~ie~-lw~l~~~gg~lViv 224 (484)
T COG5459 191 VLDELLPD--GNEKPIQ--VNIER-LWNLLAPGGHLVIV 224 (484)
T ss_pred hhhhhccc--cCcchHH--HHHHH-HHHhccCCCeEEEE
Confidence 53 22121 1111232 36677 68899999988764
No 296
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.85 E-value=0.24 Score=43.95 Aligned_cols=103 Identities=17% Similarity=0.267 Sum_probs=61.5
Q ss_pred CeEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh-cc-----CCCCC-------CCeEEEEcchHHH
Q 025107 104 KTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-NK-----EAFSD-------PRLELVINDARAE 168 (257)
Q Consensus 104 ~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~-~~-----~~~~~-------~rv~i~~~Da~~~ 168 (257)
++|.+||+|. +.++..+++. + -+|+++|.+++.++.++++... .. ..... .+++. ..|..+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~ 78 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-G-FQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAA 78 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHh
Confidence 5799999983 4455666654 3 4799999999999988765321 00 00000 12221 2232222
Q ss_pred HhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCC
Q 025107 169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (257)
Q Consensus 169 l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~ 221 (257)
+ ..-|+|+...++.. -...+++.. +.+.++|+.+++++..+
T Consensus 79 ~----~~aD~Vi~avpe~~-------~~k~~~~~~-l~~~~~~~~il~~~tSt 119 (288)
T PRK09260 79 V----ADADLVIEAVPEKL-------ELKKAVFET-ADAHAPAECYIATNTST 119 (288)
T ss_pred h----cCCCEEEEeccCCH-------HHHHHHHHH-HHhhCCCCcEEEEcCCC
Confidence 2 45699998776421 113466777 67788888888777643
No 297
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=93.65 E-value=0.22 Score=46.60 Aligned_cols=66 Identities=23% Similarity=0.299 Sum_probs=56.3
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCC-eEEEEcchHHHHhc
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPR-LELVINDARAELES 171 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~r-v~i~~~Da~~~l~~ 171 (257)
..+.-|.|+.||.|-.+.-+++.. ++|++-|++|++++..+.+.+++. -+|. ++++..||..|++.
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK~--crV~aNDLNpesik~Lk~ni~lNk---v~~~~iei~Nmda~~Flr~ 314 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKKG--CRVYANDLNPESIKWLKANIKLNK---VDPSAIEIFNMDAKDFLRQ 314 (495)
T ss_pred CCcchhhhhhcCcCccccchhhcC--cEEEecCCCHHHHHHHHHhccccc---cchhheeeecccHHHHhhc
Confidence 455678899999999998888753 899999999999999999998875 3455 99999999999974
No 298
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.51 E-value=0.28 Score=44.88 Aligned_cols=34 Identities=29% Similarity=0.595 Sum_probs=24.9
Q ss_pred CCCeEEEEeccc-hHH-HHHHHhcCCCcEEEEEECCH
Q 025107 102 NPKTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDE 136 (257)
Q Consensus 102 ~~~~VL~IG~G~-G~~-~~~l~~~~~~~~v~~VEid~ 136 (257)
..++||+||+|+ |+. +..|++ .++.+++.||-|.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~-aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVR-AGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCc
Confidence 567899999985 343 444444 5788999999985
No 299
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=93.41 E-value=0.21 Score=41.83 Aligned_cols=44 Identities=23% Similarity=0.215 Sum_probs=35.5
Q ss_pred cCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHh
Q 025107 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKS 144 (257)
Q Consensus 99 ~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~ 144 (257)
...+..-|||--+|+|+++.++.+.. .+..++|++++..++|++
T Consensus 188 ~t~~gdiVlDpF~GSGTT~~aa~~l~--R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 188 STNPGDIVLDPFAGSGTTAVAAEELG--RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HS-TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred hhccceeeehhhhccChHHHHHHHcC--CeEEEEeCCHHHHHHhcC
Confidence 34567889999999999999999863 689999999999999975
No 300
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.36 E-value=0.25 Score=42.61 Aligned_cols=83 Identities=20% Similarity=0.275 Sum_probs=51.2
Q ss_pred hHHHHHHHHHhhcCCCCCeEEEEeccchHHHH--HHHhcCCCcEEEEE--ECCHHHHHHHHhhhhhccCCCCCCCeEEEE
Q 025107 87 IYHESLVHPALLHHPNPKTIFIMGGGEGSTAR--EILRHKTVEKVVMC--DIDEEVVEFCKSYLVVNKEAFSDPRLELVI 162 (257)
Q Consensus 87 ~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~--~l~~~~~~~~v~~V--Eid~~vi~~a~~~~~~~~~~~~~~rv~i~~ 162 (257)
+|.+-+-++|..+..+.++||++|+|.=+.-+ .+++ .+ ++||+| |+++++.++++. ++++++.
T Consensus 9 ~~~~~~~~~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~-~g-A~VtVVap~i~~el~~l~~~-----------~~i~~~~ 75 (223)
T PRK05562 9 IYNEENKYMFISLLSNKIKVLIIGGGKAAFIKGKTFLK-KG-CYVYILSKKFSKEFLDLKKY-----------GNLKLIK 75 (223)
T ss_pred HhhccCCEeeeEEECCCCEEEEECCCHHHHHHHHHHHh-CC-CEEEEEcCCCCHHHHHHHhC-----------CCEEEEe
Confidence 45544444566666778999999999777543 3334 33 578877 888888766542 4566665
Q ss_pred cchHHHHhcCCCceeEEEEcCCC
Q 025107 163 NDARAELESRKESYDVIIGDLAD 185 (257)
Q Consensus 163 ~Da~~~l~~~~~~fDvIi~D~~~ 185 (257)
.+... ..-..+++|+....+
T Consensus 76 r~~~~---~dl~g~~LViaATdD 95 (223)
T PRK05562 76 GNYDK---EFIKDKHLIVIATDD 95 (223)
T ss_pred CCCCh---HHhCCCcEEEECCCC
Confidence 44321 111457777776443
No 301
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=93.23 E-value=2.3 Score=38.05 Aligned_cols=89 Identities=20% Similarity=0.194 Sum_probs=54.0
Q ss_pred CeEEEEeccch--HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025107 104 KTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (257)
Q Consensus 104 ~~VL~IG~G~G--~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~ 181 (257)
++|.+||+|.- .++..+.+.....+|+++|.+++..+.+++. .. ... ...+..+.+ +..|+|++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~-g~--------~~~-~~~~~~~~~----~~aDvVii 72 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL-GL--------GDR-VTTSAAEAV----KGADLVIL 72 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC-CC--------Cce-ecCCHHHHh----cCCCEEEE
Confidence 68999998863 3445555432224899999999887777642 11 001 122322333 45799998
Q ss_pred cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEE
Q 025107 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (257)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~ 216 (257)
-.+.. ...++++. +...++++.+++
T Consensus 73 avp~~---------~~~~v~~~-l~~~l~~~~iv~ 97 (307)
T PRK07502 73 CVPVG---------ASGAVAAE-IAPHLKPGAIVT 97 (307)
T ss_pred CCCHH---------HHHHHHHH-HHhhCCCCCEEE
Confidence 86531 12456676 567788887664
No 302
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.04 E-value=0.13 Score=41.64 Aligned_cols=76 Identities=14% Similarity=0.157 Sum_probs=52.9
Q ss_pred HHHHHHHHhhcCCCC-CeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH
Q 025107 89 HESLVHPALLHHPNP-KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA 167 (257)
Q Consensus 89 ~e~l~~~~l~~~~~~-~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~ 167 (257)
.|.+.+.-.++..++ .+.+|||.|+|-+...++++. ...-++||++|-.+..+|-+.-..+ -..+.++...|..+
T Consensus 58 teQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g---~~k~trf~RkdlwK 133 (199)
T KOG4058|consen 58 TEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAG---CAKSTRFRRKDLWK 133 (199)
T ss_pred HHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHh---cccchhhhhhhhhh
Confidence 355544422223333 689999999999999988864 5678999999999999887643221 23567777777655
Q ss_pred H
Q 025107 168 E 168 (257)
Q Consensus 168 ~ 168 (257)
+
T Consensus 134 ~ 134 (199)
T KOG4058|consen 134 V 134 (199)
T ss_pred c
Confidence 4
No 303
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.04 E-value=0.65 Score=42.14 Aligned_cols=94 Identities=17% Similarity=0.285 Sum_probs=54.9
Q ss_pred CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEEC---CHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCcee
Q 025107 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDI---DEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYD 177 (257)
Q Consensus 102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEi---d~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fD 177 (257)
..++||++|+|+ |.++.++++..+. +|++++. +++-.+.+++. .... +.....|..+ .+ ....+|
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~-Ga~~-------v~~~~~~~~~-~~-~~~~~d 240 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEEL-GATY-------VNSSKTPVAE-VK-LVGEFD 240 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHc-CCEE-------ecCCccchhh-hh-hcCCCC
Confidence 567999998754 3356667776664 7999886 67777777763 2110 1000112111 11 235689
Q ss_pred EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
+||--... ...+.. ..+.|+++|.+++-.
T Consensus 241 ~vid~~g~------------~~~~~~-~~~~l~~~G~~v~~G 269 (355)
T cd08230 241 LIIEATGV------------PPLAFE-ALPALAPNGVVILFG 269 (355)
T ss_pred EEEECcCC------------HHHHHH-HHHHccCCcEEEEEe
Confidence 88754321 123455 567899999887643
No 304
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=92.95 E-value=0.38 Score=40.61 Aligned_cols=34 Identities=32% Similarity=0.446 Sum_probs=24.6
Q ss_pred CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECC
Q 025107 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDID 135 (257)
Q Consensus 102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid 135 (257)
..++||++|+|+ |+.....+...++.+++.+|-|
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 567999999985 4433333334578899999988
No 305
>PRK11524 putative methyltransferase; Provisional
Probab=92.91 E-value=0.32 Score=43.27 Aligned_cols=55 Identities=15% Similarity=0.027 Sum_probs=44.2
Q ss_pred HHHHHHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh
Q 025107 91 SLVHPALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV 147 (257)
Q Consensus 91 ~l~~~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~ 147 (257)
++..+-.+...+..-|||--+|+|+++..+.+.. .+..++|++++..++|++.+.
T Consensus 197 L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lg--R~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 197 LLKRIILASSNPGDIVLDPFAGSFTTGAVAKASG--RKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcC--CCEEEEeCCHHHHHHHHHHHH
Confidence 3333333344667889999999999999988863 689999999999999999874
No 306
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=92.84 E-value=0.43 Score=40.69 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=24.9
Q ss_pred CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECC
Q 025107 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDID 135 (257)
Q Consensus 102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid 135 (257)
...+|+++|+|+ |+.....+...++.+++.+|.|
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 567999999985 4443333334578899999999
No 307
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.41 E-value=0.23 Score=40.77 Aligned_cols=127 Identities=16% Similarity=0.125 Sum_probs=73.4
Q ss_pred CCeEEEEeccchHHHHHHHh-cCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH-hcCCCceeEEE
Q 025107 103 PKTIFIMGGGEGSTAREILR-HKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL-ESRKESYDVII 180 (257)
Q Consensus 103 ~~~VL~IG~G~G~~~~~l~~-~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l-~~~~~~fDvIi 180 (257)
.++||++|+|--+++--+.. ..+...|..-|-+++.++-.++-.-.+.. ..-.+..+..-+-..-. ...+.+||+|+
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~-s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMA-SSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccc-cccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 58999999997776654444 45567999999999999988876543310 01122222211111111 12245899998
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhC
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF 242 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F 242 (257)
..-.--. .-+.....+. ++..|+|.|..++. +| .+.+.+..+.+...++-
T Consensus 109 aADClFf------dE~h~sLvdt-Ik~lL~p~g~Al~f--sP---RRg~sL~kF~de~~~~g 158 (201)
T KOG3201|consen 109 AADCLFF------DEHHESLVDT-IKSLLRPSGRALLF--SP---RRGQSLQKFLDEVGTVG 158 (201)
T ss_pred eccchhH------HHHHHHHHHH-HHHHhCcccceeEe--cC---cccchHHHHHHHHHhce
Confidence 7521000 0112334454 79999999986554 23 34556666666666553
No 308
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=92.40 E-value=0.78 Score=41.98 Aligned_cols=98 Identities=14% Similarity=0.109 Sum_probs=58.0
Q ss_pred CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCceeEE
Q 025107 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVI 179 (257)
Q Consensus 102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fDvI 179 (257)
..++||++|+|. |.++.++++..+..+|++++.+++-.+.++++ ... .-+.....|..+.++. ..+.+|+|
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~-Ga~------~~i~~~~~~~~~~i~~~~~~g~d~v 263 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL-GAT------ATVNAGDPNAVEQVRELTGGGVDYA 263 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc-CCc------eEeCCCchhHHHHHHHHhCCCCCEE
Confidence 457899988643 33455666766655799999999999988764 211 1111112233333433 23468988
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
+--... + +.++. +.+.|+++|.++.-.
T Consensus 264 id~~G~-----~-------~~~~~-~~~~l~~~G~iv~~G 290 (371)
T cd08281 264 FEMAGS-----V-------PALET-AYEITRRGGTTVTAG 290 (371)
T ss_pred EECCCC-----h-------HHHHH-HHHHHhcCCEEEEEc
Confidence 743211 1 23344 456789999887643
No 309
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=92.38 E-value=2.1 Score=40.24 Aligned_cols=103 Identities=18% Similarity=0.249 Sum_probs=58.3
Q ss_pred CeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh-----------
Q 025107 104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE----------- 170 (257)
Q Consensus 104 ~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~----------- 170 (257)
++|.+||+|--+ ++..+++. + -+|+++|+|++.++..++-. +.+...+..+.++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~-G-~~V~~~D~~~~~v~~l~~g~-----------~~~~e~~l~~~l~~~~~~g~l~~~ 70 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR-Q-KQVIGVDINQHAVDTINRGE-----------IHIVEPDLDMVVKTAVEGGYLRAT 70 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC-C-CEEEEEeCCHHHHHHHHCCC-----------CCcCCCCHHHHHHHHhhcCceeee
Confidence 579999998544 34445553 3 48999999999988654321 0111111111110
Q ss_pred cCCCceeEEEEcCCCCCCCCcccCCc-hHHHHHHHHcCcCCCCcEEEEecC
Q 025107 171 SRKESYDVIIGDLADPIEGGPCYKLY-TKSFYEFVVKPRLNPEGIFVTQAG 220 (257)
Q Consensus 171 ~~~~~fDvIi~D~~~~~~~~p~~~L~-t~ef~~~~~~~~L~pgGil~~~~~ 220 (257)
...+.-|+||+..+.|........+. -.+..+. +.+.|++|-+++..+.
T Consensus 71 ~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~-i~~~l~~g~iVI~~ST 120 (415)
T PRK11064 71 TTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKS-IAPVLKKGDLVILEST 120 (415)
T ss_pred cccccCCEEEEEcCCCCCCCCCcChHHHHHHHHH-HHHhCCCCCEEEEeCC
Confidence 01135799999887653211111222 2345566 6788998887776654
No 310
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=92.34 E-value=0.41 Score=47.48 Aligned_cols=146 Identities=14% Similarity=0.066 Sum_probs=82.2
Q ss_pred CCCCCeEEEEeccchHHHHHHHhcCCCcEEE---EEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcc------------
Q 025107 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVV---MCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND------------ 164 (257)
Q Consensus 100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~---~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~D------------ 164 (257)
...+..+|..|=|+|+++..+++..+..++. ..|++.....-+.-.-|-.-....+.+-+++..|
T Consensus 320 ~i~~~d~l~~GDGSGGita~lLR~~p~sr~iFNSLL~~~~~~l~Gs~P~PPsAi~~~g~~~~Rcvn~~~~W~~pSDLs~~ 399 (675)
T PF14314_consen 320 NIKYRDALCGGDGSGGITACLLRMNPTSRGIFNSLLELDGSDLRGSHPSPPSAIMALGNDKSRCVNLDTCWEHPSDLSDP 399 (675)
T ss_pred CCCcceeEEEecCchHHHHHHHHhCcccceeeeccccccCCCCCCCCCCCcHHHhccCcccceeecchhhhcCccccCCc
Confidence 4466889999999999999999987666664 4555554433322111100000112233333322
Q ss_pred -hHHHHh----cCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHh
Q 025107 165 -ARAELE----SRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLR 239 (257)
Q Consensus 165 -a~~~l~----~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~ 239 (257)
-.+|.. +..-++|+|++|+--.. .....--..-++..+.+.|+++|.++..+--.. ... .-..++..+.
T Consensus 400 ~TW~YF~~l~~~~~~~idLiv~DmEV~d---~~~~~kIe~~l~~~~~~ll~~~gtLIfKTYlt~-l~~--~~~~il~~lg 473 (675)
T PF14314_consen 400 ETWKYFVSLKKQHNLSIDLIVMDMEVRD---DSIIRKIEDNLRDYVHSLLEEPGTLIFKTYLTR-LLS--PDYNILDLLG 473 (675)
T ss_pred cHHHHHHHHHhhcCCcccEEEEeceecC---hHHHHHHHHHHHHHHHHhcCCCcEEEEehhHhh-hhc--chhhHHHHHH
Confidence 123332 23468999999985211 100010112223324568899999998762211 111 1226788899
Q ss_pred hhCCceEEEeec
Q 025107 240 QVFKCGCCALFS 251 (257)
Q Consensus 240 ~~F~~v~~~~~~ 251 (257)
..|+.|..+.++
T Consensus 474 ~~F~~V~l~qT~ 485 (675)
T PF14314_consen 474 RYFKSVELVQTQ 485 (675)
T ss_pred hhcCceEEEECC
Confidence 999999998873
No 311
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=92.30 E-value=0.92 Score=41.26 Aligned_cols=99 Identities=18% Similarity=0.256 Sum_probs=59.0
Q ss_pred CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CC-Ccee
Q 025107 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RK-ESYD 177 (257)
Q Consensus 101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~-~~fD 177 (257)
.+.++||+.|+|. |..+.++++..+..+|++++.+++-.+.++++ .. +.-+.....|..+.+.. .. ..+|
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~-Ga------~~~i~~~~~~~~~~i~~~~~~~g~d 247 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF-GA------THTVNSSGTDPVEAIRALTGGFGAD 247 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC------ceEEcCCCcCHHHHHHHHhCCCCCC
Confidence 3468999998643 33455666766655799999999988888763 21 11111122344444433 22 4589
Q ss_pred EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
+|+ |... .+ +.++. ..+.|+++|.+++-.
T Consensus 248 ~vi-d~~g----~~-------~~~~~-~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 248 VVI-DAVG----RP-------ETYKQ-AFYARDLAGTVVLVG 276 (358)
T ss_pred EEE-ECCC----CH-------HHHHH-HHHHhccCCEEEEEC
Confidence 887 4331 11 23444 456899999988643
No 312
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=92.19 E-value=0.19 Score=45.27 Aligned_cols=107 Identities=18% Similarity=0.256 Sum_probs=64.3
Q ss_pred CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhcc-----C--------------------------
Q 025107 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK-----E-------------------------- 151 (257)
Q Consensus 103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~-----~-------------------------- 151 (257)
+.+||+=|||.|.++..++.... .+-+-|.+--|+-. ..+ -++. .
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~--~~qGNEfSy~Mli~-S~F-iLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~P 226 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF--KCQGNEFSYFMLIC-SSF-ILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIP 226 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc--cccccHHHHHHHHH-HHH-HHHhhccCCcEEEEeeeeccccccccccccccccCc
Confidence 56899999999999999988643 33343554444321 111 1100 0
Q ss_pred ----C---CCCCCeEEEEcchHHHHhcCC--CceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCC
Q 025107 152 ----A---FSDPRLELVINDARAELESRK--ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (257)
Q Consensus 152 ----~---~~~~rv~i~~~Da~~~l~~~~--~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~ 221 (257)
. -.....++-.||..+...... +.||+|+...|-.. . .. -.|+++. +.+.|+|||+.+ |.||
T Consensus 227 D~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDT--a--~N--ileYi~t-I~~iLk~GGvWi-NlGP 297 (369)
T KOG2798|consen 227 DIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDT--A--HN--ILEYIDT-IYKILKPGGVWI-NLGP 297 (369)
T ss_pred cccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeec--h--HH--HHHHHHH-HHHhccCCcEEE-eccc
Confidence 0 011233445677766655432 57999998866211 1 11 2488998 799999999876 6654
No 313
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=92.18 E-value=0.79 Score=40.89 Aligned_cols=86 Identities=19% Similarity=0.284 Sum_probs=52.7
Q ss_pred CCCeEEEEecc-chHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 102 NPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 102 ~~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
+.++||++|+| -|.++.++++..+...|.++|.+++-++.++++.-.+ +. + .....+|+|+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~------~~---------~---~~~~g~Dvvi 205 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLD------PE---------K---DPRRDYRAIY 205 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccC------hh---------h---ccCCCCCEEE
Confidence 46789999864 3445667777767666888899887777666431111 10 0 0134689887
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
|... .+ ..+.. +.+.|+++|.+++-
T Consensus 206 -d~~G----~~-------~~~~~-~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 206 -DASG----DP-------SLIDT-LVRRLAKGGEIVLA 230 (308)
T ss_pred -ECCC----CH-------HHHHH-HHHhhhcCcEEEEE
Confidence 4331 11 23445 46789999998853
No 314
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=92.14 E-value=0.24 Score=45.85 Aligned_cols=102 Identities=19% Similarity=0.204 Sum_probs=70.2
Q ss_pred CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE-
Q 025107 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG- 181 (257)
Q Consensus 103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~- 181 (257)
..+++++|||-|...+++.... .+.++++++++.-+..+........ .+.+-.++..|..+-. ..+..||.+-.
T Consensus 111 ~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~~~~~~~~~~---l~~k~~~~~~~~~~~~-fedn~fd~v~~l 185 (364)
T KOG1269|consen 111 GSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFRANELAKKAY---LDNKCNFVVADFGKMP-FEDNTFDGVRFL 185 (364)
T ss_pred cccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHHHHHHHHHHH---hhhhcceehhhhhcCC-CCccccCcEEEE
Confidence 4479999999999999998875 4689999999888777776543221 2334445666654432 23578997754
Q ss_pred cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025107 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (257)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~ 217 (257)
|..-. .| .....|++ +.+.++|||++++
T Consensus 186 d~~~~---~~----~~~~~y~E-i~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 186 EVVCH---AP----DLEKVYAE-IYRVLKPGGLFIV 213 (364)
T ss_pred eeccc---CC----cHHHHHHH-HhcccCCCceEEe
Confidence 33221 22 24577888 7999999999986
No 315
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=92.09 E-value=4.3 Score=38.19 Aligned_cols=120 Identities=11% Similarity=0.029 Sum_probs=65.2
Q ss_pred CCCCeEEEEeccchHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025107 101 PNPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
...++|+++|+|.=+. ....++..+ .+|+++|.||.-...++.. . .++. +..+.+ ...|+|
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~G-a~ViV~d~dp~r~~~A~~~-G----------~~v~--~leeal----~~aDVV 254 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMG-ARVIVTEVDPIRALEAAMD-G----------FRVM--TMEEAA----KIGDIF 254 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCc-CEEEEEeCChhhHHHHHhc-C----------CEeC--CHHHHH----hcCCEE
Confidence 3578999999987543 333444444 5899999999654444321 1 1111 222223 346998
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeec
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFS 251 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~ 251 (257)
+.-.. . ..+.+.+ ....+++|++++ |.+.....-+.+.+.+....-+.+-+++..|..+
T Consensus 255 ItaTG-----~--~~vI~~~-----~~~~mK~Gaili-N~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~~ 313 (406)
T TIGR00936 255 ITATG-----N--KDVIRGE-----HFENMKDGAIVA-NIGHFDVEIDVKALEELAVEKRNVRPQVDEYILK 313 (406)
T ss_pred EECCC-----C--HHHHHHH-----HHhcCCCCcEEE-EECCCCceeCHHHHHHHHhhccccccceEEEEeC
Confidence 76321 1 1233322 345688888776 5554332123344444433334566777777664
No 316
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=92.01 E-value=2.9 Score=40.11 Aligned_cols=113 Identities=16% Similarity=0.186 Sum_probs=61.7
Q ss_pred CeEEEEeccchHHHHH--HHhcCCCcEEEEEECCHHHHHHHHhhhh-hccCCCC-------CCCeEEEEcchHHHHhcCC
Q 025107 104 KTIFIMGGGEGSTARE--ILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFS-------DPRLELVINDARAELESRK 173 (257)
Q Consensus 104 ~~VL~IG~G~G~~~~~--l~~~~~~~~v~~VEid~~vi~~a~~~~~-~~~~~~~-------~~rv~i~~~Da~~~l~~~~ 173 (257)
.+|.+||+|-.+++.. ++.....-+|+++|+|++.++..++-.. .....+. ..++++. .|..+.+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t-~~~~~~i---- 76 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFS-TDVEKHV---- 76 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEE-cCHHHHH----
Confidence 3699999988776544 3333212479999999999998776421 1110000 0011111 1111111
Q ss_pred CceeEEEEcCCCCCCC-C-----cccCCchHHHHHHHHcCcCCCCcEEEEecCCC
Q 025107 174 ESYDVIIGDLADPIEG-G-----PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (257)
Q Consensus 174 ~~fDvIi~D~~~~~~~-~-----p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~ 222 (257)
..-|+||+..+-|... + .+..-+-.+..+. +.+.|+++-++++.+..|
T Consensus 77 ~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~-i~~~l~~~~lVv~~STvp 130 (473)
T PLN02353 77 AEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARM-IADVSKSDKIVVEKSTVP 130 (473)
T ss_pred hcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHH-HHhhCCCCcEEEEeCCCC
Confidence 3468888876544311 0 1111123466676 688898887777776443
No 317
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.96 E-value=0.57 Score=41.43 Aligned_cols=101 Identities=21% Similarity=0.306 Sum_probs=61.9
Q ss_pred CeEEEEecc--chHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh-----ccCC-CCC-------CCeEEEEcchHHH
Q 025107 104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-----NKEA-FSD-------PRLELVINDARAE 168 (257)
Q Consensus 104 ~~VL~IG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~-----~~~~-~~~-------~rv~i~~~Da~~~ 168 (257)
++|.+||+| ++.++..+++. + .+|+++|++++.++.+++.+.. .... ... .++++ ..|. +-
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~-g-~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~-~~ 79 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA-G-YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDL-DD 79 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC-C-CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCH-HH
Confidence 479999998 56667777765 3 3899999999999765543210 0000 000 13332 2332 11
Q ss_pred HhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025107 169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (257)
Q Consensus 169 l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~ 220 (257)
+ +..|+|+...+.. .....++++. +.+.++|+.+++.+..
T Consensus 80 ~----~~aDlVi~av~e~-------~~~k~~~~~~-l~~~~~~~~il~s~ts 119 (282)
T PRK05808 80 L----KDADLVIEAATEN-------MDLKKKIFAQ-LDEIAKPEAILATNTS 119 (282)
T ss_pred h----ccCCeeeeccccc-------HHHHHHHHHH-HHhhCCCCcEEEECCC
Confidence 2 4579999876531 1123578888 7888999988877654
No 318
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=91.85 E-value=2.2 Score=40.35 Aligned_cols=119 Identities=11% Similarity=0.052 Sum_probs=63.7
Q ss_pred CCCeEEEEeccchHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
..++|+++|+|.=+. ....++..+ .+|+++|+|+.-...+... + .++ .+..+.+ +..|+|+
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~G-a~ViV~d~dp~ra~~A~~~-G----------~~v--~~l~eal----~~aDVVI 272 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLG-ARVIVTEVDPICALQAAMD-G----------FRV--MTMEEAA----ELGDIFV 272 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCchhhHHHHhc-C----------CEe--cCHHHHH----hCCCEEE
Confidence 578999999986443 223333344 4899999998764444321 1 111 1222333 3589987
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeec
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFS 251 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~ 251 (257)
.... . .+..+. . ..+.+|+|++++ |.+..+...+...+.+....-+++-|++.-|..+
T Consensus 273 ~aTG------~-~~vI~~----~-~~~~mK~Gaili-NvG~~d~Eid~~~L~~~~~~~~~v~~~v~~y~~~ 330 (425)
T PRK05476 273 TATG------N-KDVITA----E-HMEAMKDGAILA-NIGHFDNEIDVAALEELAVKWREIKPQVDEYTLP 330 (425)
T ss_pred ECCC------C-HHHHHH----H-HHhcCCCCCEEE-EcCCCCCccChHHHhhcCcceeecCCCceEEEeC
Confidence 6421 1 122222 2 345788888776 6554432222333333322334556777777664
No 319
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=91.84 E-value=1.4 Score=39.25 Aligned_cols=110 Identities=18% Similarity=0.192 Sum_probs=64.6
Q ss_pred CCeEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 103 PKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 103 ~~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.++|+++|+|. |++++.+.+......|+..|.+....+.+.+. ... +.. ..+ .........|+||
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-gv~-----d~~----~~~---~~~~~~~~aD~Vi 69 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-GVI-----DEL----TVA---GLAEAAAEADLVI 69 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-Ccc-----ccc----ccc---hhhhhcccCCEEE
Confidence 35789999873 55666666654445678888888777776642 111 110 011 1112235689999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCc
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKC 244 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~ 244 (257)
+..|-. .+.+++++ +...|++|.+++ -.++- -..+++.+++..|.
T Consensus 70 vavPi~---------~~~~~l~~-l~~~l~~g~iv~-Dv~S~--------K~~v~~a~~~~~~~ 114 (279)
T COG0287 70 VAVPIE---------ATEEVLKE-LAPHLKKGAIVT-DVGSV--------KSSVVEAMEKYLPG 114 (279)
T ss_pred EeccHH---------HHHHHHHH-hcccCCCCCEEE-ecccc--------cHHHHHHHHHhccC
Confidence 986521 25688888 677899887665 43321 13555556666544
No 320
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=91.81 E-value=0.74 Score=42.17 Aligned_cols=34 Identities=35% Similarity=0.601 Sum_probs=24.8
Q ss_pred CCCeEEEEeccc-hHH-HHHHHhcCCCcEEEEEECCH
Q 025107 102 NPKTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDE 136 (257)
Q Consensus 102 ~~~~VL~IG~G~-G~~-~~~l~~~~~~~~v~~VEid~ 136 (257)
..++||++|+|+ |+. +..|++ .++.+++.||-|.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~-aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVR-AGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHH-cCCCeEEEEeCCc
Confidence 567999999985 333 444444 5788999999883
No 321
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=91.62 E-value=3.1 Score=36.43 Aligned_cols=108 Identities=21% Similarity=0.214 Sum_probs=63.3
Q ss_pred CCCCeEEEEeccchHHHHH---HHh-c-CCCcEEEEEECCH--------------------------HHHHHHHhhhhhc
Q 025107 101 PNPKTIFIMGGGEGSTARE---ILR-H-KTVEKVVMCDIDE--------------------------EVVEFCKSYLVVN 149 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~---l~~-~-~~~~~v~~VEid~--------------------------~vi~~a~~~~~~~ 149 (257)
.-|..|+++|+--|+.+.. +++ + ....++.+.|.-. ...+..+++|...
T Consensus 73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~ 152 (248)
T PF05711_consen 73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY 152 (248)
T ss_dssp TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence 4478999999988876543 332 1 1235677776432 1334455554422
Q ss_pred cCCCCCCCeEEEEcchHHHHhcC-CCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 150 KEAFSDPRLELVINDARAELESR-KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 150 ~~~~~~~rv~i~~~Da~~~l~~~-~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
.+.+++++++.|+..+-+... .+++-++-+|.-- +.| |.+.++. +..+|.|||++++..
T Consensus 153 --gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl---Yes-----T~~aLe~-lyprl~~GGiIi~DD 212 (248)
T PF05711_consen 153 --GLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL---YES-----TKDALEF-LYPRLSPGGIIIFDD 212 (248)
T ss_dssp --TTSSTTEEEEES-HHHHCCC-TT--EEEEEE---S---HHH-----HHHHHHH-HGGGEEEEEEEEESS
T ss_pred --CCCcccEEEECCcchhhhccCCCccEEEEEEeccc---hHH-----HHHHHHH-HHhhcCCCeEEEEeC
Confidence 234679999999998888653 4678888887521 122 6788888 799999999999864
No 322
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=91.41 E-value=0.5 Score=38.71 Aligned_cols=103 Identities=16% Similarity=0.208 Sum_probs=59.0
Q ss_pred CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCe-EEEEcchHHHHhcCCCceeEEEE
Q 025107 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRL-ELVINDARAELESRKESYDVIIG 181 (257)
Q Consensus 103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv-~i~~~Da~~~l~~~~~~fDvIi~ 181 (257)
.++++++|..-=-.=..++++ ++.+|..||-++--++. ++ . .|+ ++...|..+-.+...++||.+.+
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~-GA~~iltveyn~L~i~~--~~--------~-dr~ssi~p~df~~~~~~y~~~fD~~as 69 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQH-GAAKILTVEYNKLEIQE--EF--------R-DRLSSILPVDFAKNWQKYAGSFDFAAS 69 (177)
T ss_pred CceEEEEecCCchhhHHHHHc-CCceEEEEeecccccCc--cc--------c-cccccccHHHHHHHHHHhhccchhhhe
Confidence 578999998766665566665 56789999987632211 10 1 122 22333433333344578998765
Q ss_pred cCC-CCCC----CCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 182 DLA-DPIE----GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 182 D~~-~~~~----~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
-.. ++.. ..|....-...-+.. ++++|||||.+.+-
T Consensus 70 ~~siEh~GLGRYGDPidp~Gdl~~m~~-i~~vLK~GG~L~l~ 110 (177)
T PF03269_consen 70 FSSIEHFGLGRYGDPIDPIGDLRAMAK-IKCVLKPGGLLFLG 110 (177)
T ss_pred echhccccccccCCCCCccccHHHHHH-HHHhhccCCeEEEE
Confidence 432 2211 122222334456666 69999999988764
No 323
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=91.25 E-value=2.4 Score=35.91 Aligned_cols=98 Identities=21% Similarity=0.334 Sum_probs=59.5
Q ss_pred CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH-hcCCCceeE
Q 025107 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL-ESRKESYDV 178 (257)
Q Consensus 101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l-~~~~~~fDv 178 (257)
.+..+||+.|+|+ |..+.++++..+ .+|++++.+++-.+.+++... . .-+.....+...-+ ....+.+|+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g~-~------~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKELGA-D------HVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHhCC-c------eeccCCcCCHHHHHHHhcCCCCCE
Confidence 4568999999986 556666777655 689999999888877765421 0 00111111222212 223467999
Q ss_pred EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
|+...... ..... +.+.|+++|.++...
T Consensus 205 vi~~~~~~------------~~~~~-~~~~l~~~G~~v~~~ 232 (271)
T cd05188 205 VIDAVGGP------------ETLAQ-ALRLLRPGGRIVVVG 232 (271)
T ss_pred EEECCCCH------------HHHHH-HHHhcccCCEEEEEc
Confidence 98643310 23444 466889999988654
No 324
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.23 E-value=2.2 Score=40.28 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=31.5
Q ss_pred CCCeEEEEeccchHH-HHHHHhcCCCcEEEEEECCHHHHHHHHh
Q 025107 102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKS 144 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~ 144 (257)
..++|+++|+|.=+. ...+++..+. +|+++|+||.-.+.|++
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM 243 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh
Confidence 578999999997443 3444454554 89999999988887776
No 325
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=91.22 E-value=1 Score=41.56 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=25.9
Q ss_pred CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCH
Q 025107 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE 136 (257)
Q Consensus 102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~ 136 (257)
...+||++|||+ |+.....+...++.+++.||-|.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 567999999985 44444444446889999999885
No 326
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=91.14 E-value=0.49 Score=40.53 Aligned_cols=91 Identities=16% Similarity=0.148 Sum_probs=56.6
Q ss_pred CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH-Hh-cCCCceeEEE
Q 025107 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE-LE-SRKESYDVII 180 (257)
Q Consensus 103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~-l~-~~~~~fDvIi 180 (257)
+-++|+||+=+...+... .+.-.|+.+|+++.--. +...|..+. +. ...++||+|.
T Consensus 52 ~lrlLEVGals~~N~~s~---~~~fdvt~IDLns~~~~-------------------I~qqDFm~rplp~~~~e~FdvIs 109 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACST---SGWFDVTRIDLNSQHPG-------------------ILQQDFMERPLPKNESEKFDVIS 109 (219)
T ss_pred cceEEeecccCCCCcccc---cCceeeEEeecCCCCCC-------------------ceeeccccCCCCCCcccceeEEE
Confidence 469999999755433322 23346999999874322 334454332 11 2347899999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcE-----EEEec
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGI-----FVTQA 219 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGi-----l~~~~ 219 (257)
+.+--.. -| ..-..-+.++. +.+.|+|+|. +.+-.
T Consensus 110 ~SLVLNf--VP-~p~~RG~Ml~r-~~~fL~~~g~~~~~~LFlVl 149 (219)
T PF11968_consen 110 LSLVLNF--VP-DPKQRGEMLRR-AHKFLKPPGLSLFPSLFLVL 149 (219)
T ss_pred EEEEEee--CC-CHHHHHHHHHH-HHHHhCCCCccCcceEEEEe
Confidence 9875322 22 12334578888 7999999999 66544
No 327
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=91.10 E-value=1.1 Score=37.77 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=24.4
Q ss_pred CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCH
Q 025107 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE 136 (257)
Q Consensus 102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~ 136 (257)
..++||++|+|+ |+-....+...++.+++.+|-|.
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 457999999875 33333333346889999999874
No 328
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=91.05 E-value=0.47 Score=36.31 Aligned_cols=89 Identities=20% Similarity=0.206 Sum_probs=59.9
Q ss_pred cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-C-CceeEEEEcCCCCCCC
Q 025107 112 GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-K-ESYDVIIGDLADPIEG 189 (257)
Q Consensus 112 G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-~-~~fDvIi~D~~~~~~~ 189 (257)
|-|..+..++++.+ .+|++++.++.-.+.++++-... -+.....|..+.++.. + ..+|+||--..
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~-------~~~~~~~~~~~~i~~~~~~~~~d~vid~~g----- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGADH-------VIDYSDDDFVEQIRELTGGRGVDVVIDCVG----- 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESE-------EEETTTSSHHHHHHHHTTTSSEEEEEESSS-----
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcccc-------cccccccccccccccccccccceEEEEecC-----
Confidence 45888888999877 89999999999999999863110 0111112345555542 3 47999986532
Q ss_pred CcccCCchHHHHHHHHcCcCCCCcEEEEecCC
Q 025107 190 GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (257)
Q Consensus 190 ~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~ 221 (257)
+.+.++. .-+.|+++|.+++-...
T Consensus 68 -------~~~~~~~-~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 68 -------SGDTLQE-AIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp -------SHHHHHH-HHHHEEEEEEEEEESST
T ss_pred -------cHHHHHH-HHHHhccCCEEEEEEcc
Confidence 1245566 57789999999876543
No 329
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=91.00 E-value=2.7 Score=35.99 Aligned_cols=101 Identities=20% Similarity=0.197 Sum_probs=62.5
Q ss_pred CCCeEEEEeccchH----HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchH-HHHhcCCCce
Q 025107 102 NPKTIFIMGGGEGS----TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR-AELESRKESY 176 (257)
Q Consensus 102 ~~~~VL~IG~G~G~----~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~-~~l~~~~~~f 176 (257)
+.+-+++..+++|. ++..++.+....++++|-.+++-....++.+.-.+ ..+.++++++|.. +.+.. -...
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~---~~~~vEfvvg~~~e~~~~~-~~~i 116 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAG---LSDVVEFVVGEAPEEVMPG-LKGI 116 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcc---ccccceEEecCCHHHHHhh-ccCC
Confidence 45678888665442 33333333234689999999888877777764322 2356799999854 45543 3679
Q ss_pred eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025107 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (257)
Q Consensus 177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~ 217 (257)
|++++|.-. +-+..++++. + .++|.|.+++
T Consensus 117 DF~vVDc~~--------~d~~~~vl~~-~--~~~~~GaVVV 146 (218)
T PF07279_consen 117 DFVVVDCKR--------EDFAARVLRA-A--KLSPRGAVVV 146 (218)
T ss_pred CEEEEeCCc--------hhHHHHHHHH-h--ccCCCceEEE
Confidence 999999642 1122356665 3 3777776554
No 330
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=91.00 E-value=1.2 Score=39.90 Aligned_cols=95 Identities=22% Similarity=0.231 Sum_probs=57.8
Q ss_pred CeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCceeEEE
Q 025107 104 KTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDVII 180 (257)
Q Consensus 104 ~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fDvIi 180 (257)
.+||+.|+ |.|..+.+++++.+..+|+++.-+++-.+.+++.++.. .-+.....|..+.++. .++.+|+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~------~vi~~~~~~~~~~i~~~~~~gvd~vi 229 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFD------AAINYKTDNVAERLRELCPEGVDVYF 229 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCc------EEEECCCCCHHHHHHHHCCCCceEEE
Confidence 79999985 56667777888766447999988888777776644321 1111112344444433 235699988
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
|... .+ . +.. +.+.|+++|.++.-
T Consensus 230 -d~~g----~~-------~-~~~-~~~~l~~~G~iv~~ 253 (345)
T cd08293 230 -DNVG----GE-------I-SDT-VISQMNENSHIILC 253 (345)
T ss_pred -ECCC----cH-------H-HHH-HHHHhccCCEEEEE
Confidence 4321 11 1 234 45679999988753
No 331
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=90.97 E-value=0.82 Score=41.03 Aligned_cols=75 Identities=25% Similarity=0.412 Sum_probs=43.4
Q ss_pred EEEEeccchHHHHHHHhc---CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEE----EEcchHHHHh--c--CCC
Q 025107 106 IFIMGGGEGSTAREILRH---KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL----VINDARAELE--S--RKE 174 (257)
Q Consensus 106 VL~IG~G~G~~~~~l~~~---~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i----~~~Da~~~l~--~--~~~ 174 (257)
||+-|+| |++..++.+. .+..++..+|.|+.-+-..++.+.... .++++++ +.+|.++.-+ . ...
T Consensus 1 VLVTGa~-GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~---~~~~v~~~~~~vigDvrd~~~l~~~~~~~ 76 (293)
T PF02719_consen 1 VLVTGAG-GSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRF---PDPKVRFEIVPVIGDVRDKERLNRIFEEY 76 (293)
T ss_dssp EEEETTT-SHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC-----TTCEEEEE--CTSCCHHHHHHHHTT--
T ss_pred CEEEccc-cHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcc---cccCcccccCceeecccCHHHHHHHHhhc
Confidence 5666664 7876665552 234799999999998877777663211 2355654 5888877533 2 234
Q ss_pred ceeEEEEcCC
Q 025107 175 SYDVIIGDLA 184 (257)
Q Consensus 175 ~fDvIi~D~~ 184 (257)
+.|+|++.+.
T Consensus 77 ~pdiVfHaAA 86 (293)
T PF02719_consen 77 KPDIVFHAAA 86 (293)
T ss_dssp T-SEEEE---
T ss_pred CCCEEEEChh
Confidence 8999999886
No 332
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=90.81 E-value=2 Score=38.78 Aligned_cols=97 Identities=19% Similarity=0.223 Sum_probs=57.6
Q ss_pred CCCCeEEEEecc-chHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CCCcee
Q 025107 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD 177 (257)
Q Consensus 101 ~~~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~~~fD 177 (257)
.+.++||+.|+| .|..+.++++..+...+++++.+++-.+.++++ +.. .-+.....|..+.+.. ....+|
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~~------~~v~~~~~~~~~~i~~~~~~~~~d 237 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY-GAT------DIVDYKNGDVVEQILKLTGGKGVD 237 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCc------eEecCCCCCHHHHHHHHhCCCCCc
Confidence 456899999764 233455666766666799999999888888863 211 1111112233233322 234699
Q ss_pred EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025107 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (257)
Q Consensus 178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~ 217 (257)
+|+-... . .+.+.. +.+.|+++|.++.
T Consensus 238 ~vld~~g-----~-------~~~~~~-~~~~l~~~G~~v~ 264 (351)
T cd08285 238 AVIIAGG-----G-------QDTFEQ-ALKVLKPGGTISN 264 (351)
T ss_pred EEEECCC-----C-------HHHHHH-HHHHhhcCCEEEE
Confidence 8875322 1 133455 5678999998874
No 333
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=90.77 E-value=0.76 Score=38.32 Aligned_cols=111 Identities=25% Similarity=0.295 Sum_probs=56.8
Q ss_pred CeEEEEeccchHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhhh-hhccCC--------CCCCCeEEEEcchHHHHhcC
Q 025107 104 KTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYL-VVNKEA--------FSDPRLELVINDARAELESR 172 (257)
Q Consensus 104 ~~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~~-~~~~~~--------~~~~rv~i~~~Da~~~l~~~ 172 (257)
.+|-++|+|==++ +..++. .+ -+|+++|+|++.++..++-. +..... ....|+++. .|....+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~-~G-~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai--- 74 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAE-KG-HQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAI--- 74 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHH-TT-SEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH---
T ss_pred CEEEEECCCcchHHHHHHHHh-CC-CEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhh---
Confidence 3688898885443 334444 34 59999999999999887642 221100 012333332 3433333
Q ss_pred CCceeEEEEcCCCCCCC-CcccCCchHHHHHHHHcCcCCCCcEEEEecCCC
Q 025107 173 KESYDVIIGDLADPIEG-GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (257)
Q Consensus 173 ~~~fDvIi~D~~~~~~~-~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~ 222 (257)
...|++++..+.|... +.+..-+-....+. +.+.|+++-++++.+..|
T Consensus 75 -~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~-i~~~l~~~~lvV~~STvp 123 (185)
T PF03721_consen 75 -KDADVVFICVPTPSDEDGSPDLSYVESAIES-IAPVLRPGDLVVIESTVP 123 (185)
T ss_dssp -HH-SEEEE----EBETTTSBETHHHHHHHHH-HHHHHCSCEEEEESSSSS
T ss_pred -hccceEEEecCCCccccCCccHHHHHHHHHH-HHHHHhhcceEEEccEEE
Confidence 3579999887644311 11112223456677 688999988888876433
No 334
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=90.76 E-value=2.9 Score=37.82 Aligned_cols=112 Identities=18% Similarity=0.306 Sum_probs=59.7
Q ss_pred CCCCCeEEEEeccc-hHHHHHHHhcCCC-cEEEEEECCHHHHHH-HHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCce
Q 025107 100 HPNPKTIFIMGGGE-GSTAREILRHKTV-EKVVMCDIDEEVVEF-CKSYLVVNKEAFSDPRLELVINDARAELESRKESY 176 (257)
Q Consensus 100 ~~~~~~VL~IG~G~-G~~~~~l~~~~~~-~~v~~VEid~~vi~~-a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~f 176 (257)
...+++|.+||+|. |+....++...+. .++..+|++++..+- +.+..... .+. .++++..+|-.+ + ...
T Consensus 3 ~~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~--~~~-~~~~i~~~~~~~-~----~~a 74 (315)
T PRK00066 3 KKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAV--PFT-SPTKIYAGDYSD-C----KDA 74 (315)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhc--ccc-CCeEEEeCCHHH-h----CCC
Confidence 35678999999976 5544444433333 479999998876543 33222111 112 356666555333 2 467
Q ss_pred eEEEEcCCCCCCCCcc-cCCc--hHHHHHHHHc--CcCCCCcEEEEec
Q 025107 177 DVIIGDLADPIEGGPC-YKLY--TKSFYEFVVK--PRLNPEGIFVTQA 219 (257)
Q Consensus 177 DvIi~D~~~~~~~~p~-~~L~--t~ef~~~~~~--~~L~pgGil~~~~ 219 (257)
|+|++.+-.|...+.. ..|+ +...++.++. +...|+|++++-.
T Consensus 75 divIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 75 DLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 9999876544321110 1122 2234444222 2345889876543
No 335
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.60 E-value=1.4 Score=40.07 Aligned_cols=103 Identities=18% Similarity=0.210 Sum_probs=63.2
Q ss_pred CCeEEEEecc--chHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc-----cCCC----CCCCeEEEEcchHHHHhc
Q 025107 103 PKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-----KEAF----SDPRLELVINDARAELES 171 (257)
Q Consensus 103 ~~~VL~IG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~-----~~~~----~~~rv~i~~~Da~~~l~~ 171 (257)
-++|-+||+| +.+++..++.. + -+|+.+|.+++..+.+++.+... .... ...++++. .|..+-+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a-G-~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~av-- 81 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH-G-LDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEACV-- 81 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHHHh--
Confidence 4789999999 45566666664 4 58999999999887766543210 0000 01234433 2332222
Q ss_pred CCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025107 172 RKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (257)
Q Consensus 172 ~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~ 220 (257)
..-|+|+-..++.. -...+.|+. +.+.++|+-++..|+.
T Consensus 82 --~~aDlViEavpE~l-------~vK~~lf~~-l~~~~~~~aIlaSnTS 120 (321)
T PRK07066 82 --ADADFIQESAPERE-------ALKLELHER-ISRAAKPDAIIASSTS 120 (321)
T ss_pred --cCCCEEEECCcCCH-------HHHHHHHHH-HHHhCCCCeEEEECCC
Confidence 45699998766421 123567777 6888888888777654
No 336
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=90.60 E-value=2.1 Score=37.98 Aligned_cols=37 Identities=27% Similarity=0.385 Sum_probs=28.3
Q ss_pred CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHH
Q 025107 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEE 137 (257)
Q Consensus 101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~ 137 (257)
-...+||++|+|+ |+.+.+.+...++.+++.+|-|..
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 3567999999984 666666666678899999998843
No 337
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.58 E-value=3.3 Score=37.83 Aligned_cols=132 Identities=11% Similarity=0.080 Sum_probs=71.2
Q ss_pred CCCCeEEEEeccchHHHH--HHHhcCCCcEEEEEECCHHHHHHHHhhhh---hccCCCC-CCCeEEEEcchHHHHhcCCC
Q 025107 101 PNPKTIFIMGGGEGSTAR--EILRHKTVEKVVMCDIDEEVVEFCKSYLV---VNKEAFS-DPRLELVINDARAELESRKE 174 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~--~l~~~~~~~~v~~VEid~~vi~~a~~~~~---~~~~~~~-~~rv~i~~~Da~~~l~~~~~ 174 (257)
....+|.+||+|.-+.+. .+.+ .+ .++.+..+++.++..++.-. ....... .+++.. ..|..+.+ +
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La~-~g--~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~-t~d~~~a~----~ 76 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICAR-RG--PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRA-TTDFAEAA----N 76 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHH-CC--CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEE-ECCHHHHH----h
Confidence 345689999998877543 3333 22 56777799999887776421 1100010 122332 34433333 4
Q ss_pred ceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEE-EecCCCCCCCChHHHHHHHHHHhhhCCceEEEeecCc
Q 025107 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV-TQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSY 253 (257)
Q Consensus 175 ~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~-~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~~ 253 (257)
..|+|++-.+. .+.++.++. ++..++++..++ ++-+-. .... ..+.+.+++.++.......+.|
T Consensus 77 ~aDlVilavps---------~~~~~vl~~-i~~~l~~~~~vIsl~kGi~--~~t~---~~~se~i~~~l~~~~~~~l~GP 141 (341)
T PRK12439 77 CADVVVMGVPS---------HGFRGVLTE-LAKELRPWVPVVSLVKGLE--QGTN---MRMSQIIEEVLPGHPAGILAGP 141 (341)
T ss_pred cCCEEEEEeCH---------HHHHHHHHH-HHhhcCCCCEEEEEEeCCc--CCCC---CcHHHHHHHHcCCCCeEEEECC
Confidence 57999987542 235678888 788898886443 332211 1111 2333445555654444445555
Q ss_pred cc
Q 025107 254 SF 255 (257)
Q Consensus 254 ~~ 255 (257)
+|
T Consensus 142 ~~ 143 (341)
T PRK12439 142 NI 143 (341)
T ss_pred CH
Confidence 54
No 338
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=90.51 E-value=1.2 Score=37.88 Aligned_cols=74 Identities=15% Similarity=0.269 Sum_probs=44.6
Q ss_pred HhhcCCCCCeEEEEeccchHH--HHHHHhcCCCcEEEEEECC--HHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc
Q 025107 96 ALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDID--EEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES 171 (257)
Q Consensus 96 ~l~~~~~~~~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid--~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~ 171 (257)
|+....+.++||++|+|.=+. ++.+++. + ++|++|+.+ ++..++++ ..+++++.++....
T Consensus 2 P~~l~l~gk~vlVvGgG~va~rk~~~Ll~~-g-a~VtVvsp~~~~~l~~l~~-----------~~~i~~~~~~~~~~--- 65 (205)
T TIGR01470 2 PVFANLEGRAVLVVGGGDVALRKARLLLKA-G-AQLRVIAEELESELTLLAE-----------QGGITWLARCFDAD--- 65 (205)
T ss_pred CeEEEcCCCeEEEECcCHHHHHHHHHHHHC-C-CEEEEEcCCCCHHHHHHHH-----------cCCEEEEeCCCCHH---
Confidence 344445678999999986554 3455553 3 589988544 44444433 23677776664321
Q ss_pred CCCceeEEEEcCCC
Q 025107 172 RKESYDVIIGDLAD 185 (257)
Q Consensus 172 ~~~~fDvIi~D~~~ 185 (257)
.-..+|+|+....+
T Consensus 66 dl~~~~lVi~at~d 79 (205)
T TIGR01470 66 ILEGAFLVIAATDD 79 (205)
T ss_pred HhCCcEEEEECCCC
Confidence 12568998887554
No 339
>TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627. This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069).
Probab=90.39 E-value=3.2 Score=35.46 Aligned_cols=51 Identities=14% Similarity=0.223 Sum_probs=41.9
Q ss_pred HHhhcCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh
Q 025107 95 PALLHHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV 147 (257)
Q Consensus 95 ~~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~ 147 (257)
...+.+..|-+.|+.|.|-.++.-..+.+. .+...+|=|+..++.+++.++
T Consensus 32 ~~VL~~raPCN~LVFGLghdsllW~aLN~g--GrTvFLEEd~~~i~~~~~~~p 82 (225)
T TIGR01627 32 SDVLTRRSPCNILVFGLAHQYLMWSSLNHR--GRTVFIEEEKIMIAKAEVNPP 82 (225)
T ss_pred HHHHHhcCCceEEEeccCcchHHHHHhcCC--CeeEEecCCHHHHHHHhhcCC
Confidence 344456678999999999999999888874 477899999999999988654
No 340
>PRK13699 putative methylase; Provisional
Probab=90.37 E-value=0.98 Score=38.93 Aligned_cols=46 Identities=15% Similarity=0.106 Sum_probs=39.8
Q ss_pred CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh
Q 025107 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV 147 (257)
Q Consensus 100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~ 147 (257)
..+..-|||--+|+|+++..+.+.. .+..++|++++..+.+++.+.
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~~--r~~~g~e~~~~y~~~~~~r~~ 206 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQSG--RRYIGIELLEQYHRAGQQRLA 206 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHcC--CCEEEEecCHHHHHHHHHHHH
Confidence 4566789999999999999988863 589999999999999998764
No 341
>PRK10637 cysG siroheme synthase; Provisional
Probab=90.36 E-value=0.83 Score=43.55 Aligned_cols=76 Identities=16% Similarity=0.254 Sum_probs=46.5
Q ss_pred HHHhhcCCCCCeEEEEeccchHHHH--HHHhcCCCcEEEEE--ECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH
Q 025107 94 HPALLHHPNPKTIFIMGGGEGSTAR--EILRHKTVEKVVMC--DIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL 169 (257)
Q Consensus 94 ~~~l~~~~~~~~VL~IG~G~G~~~~--~l~~~~~~~~v~~V--Eid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l 169 (257)
+.|+....+.++||++|+|.=+.-+ .+++ .+ ++|++| |+++++-+++++ .+++++..+..
T Consensus 3 ~~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~-~g-a~v~visp~~~~~~~~l~~~-----------~~i~~~~~~~~--- 66 (457)
T PRK10637 3 HLPIFCQLRDRDCLLVGGGDVAERKARLLLD-AG-ARLTVNALAFIPQFTAWADA-----------GMLTLVEGPFD--- 66 (457)
T ss_pred eeceEEEcCCCEEEEECCCHHHHHHHHHHHH-CC-CEEEEEcCCCCHHHHHHHhC-----------CCEEEEeCCCC---
Confidence 3577777789999999998766532 3344 23 578877 777776555432 45666654432
Q ss_pred hcCCCceeEEEEcCCC
Q 025107 170 ESRKESYDVIIGDLAD 185 (257)
Q Consensus 170 ~~~~~~fDvIi~D~~~ 185 (257)
...-+.+|+|+....+
T Consensus 67 ~~dl~~~~lv~~at~d 82 (457)
T PRK10637 67 ESLLDTCWLAIAATDD 82 (457)
T ss_pred hHHhCCCEEEEECCCC
Confidence 1112456777766443
No 342
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.31 E-value=1.6 Score=38.74 Aligned_cols=102 Identities=21% Similarity=0.321 Sum_probs=61.2
Q ss_pred CeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc------cCCCCC-------CCeEEEEcchHHH
Q 025107 104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFSD-------PRLELVINDARAE 168 (257)
Q Consensus 104 ~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~------~~~~~~-------~rv~i~~~Da~~~ 168 (257)
++|.+||+|.-+ ++..+++. + .+|+++|.+++.++.+.+..... ...... .+++.. .|. +-
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~ 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-G-YDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDL-ED 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCH-HH
Confidence 679999998544 45555553 3 48999999999988765432210 000000 223332 332 22
Q ss_pred HhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCC
Q 025107 169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (257)
Q Consensus 169 l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~ 221 (257)
+ ...|+|+.-.++.. -....+++. +.+.++|+.+++.++.+
T Consensus 81 ~----~~aD~Vieavpe~~-------~~k~~~~~~-l~~~~~~~~ii~s~ts~ 121 (292)
T PRK07530 81 L----ADCDLVIEAATEDE-------TVKRKIFAQ-LCPVLKPEAILATNTSS 121 (292)
T ss_pred h----cCCCEEEEcCcCCH-------HHHHHHHHH-HHhhCCCCcEEEEcCCC
Confidence 2 45799998876421 123466777 68889999888766543
No 343
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=90.25 E-value=4.4 Score=33.13 Aligned_cols=99 Identities=17% Similarity=0.149 Sum_probs=54.5
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.+..+|+.||+=+-.....-. ..+..++...|+|.+.-....+.|-.-+ ++.| .+.......+||+|+
T Consensus 24 ~~~~~iaclstPsl~~~l~~~-~~~~~~~~Lle~D~RF~~~~~~~F~fyD--~~~p---------~~~~~~l~~~~d~vv 91 (162)
T PF10237_consen 24 LDDTRIACLSTPSLYEALKKE-SKPRIQSFLLEYDRRFEQFGGDEFVFYD--YNEP---------EELPEELKGKFDVVV 91 (162)
T ss_pred CCCCEEEEEeCcHHHHHHHhh-cCCCccEEEEeecchHHhcCCcceEECC--CCCh---------hhhhhhcCCCceEEE
Confidence 456799999997655544331 2334689999999988664433121110 0111 111122246899999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
+|||--. ....+ .+-+. ++..+++++.++.-
T Consensus 92 ~DPPFl~-----~ec~~-k~a~t-i~~L~k~~~kii~~ 122 (162)
T PF10237_consen 92 IDPPFLS-----EECLT-KTAET-IRLLLKPGGKIILC 122 (162)
T ss_pred ECCCCCC-----HHHHH-HHHHH-HHHHhCccceEEEe
Confidence 9986311 11111 11233 46667887877753
No 344
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=90.23 E-value=1.6 Score=32.72 Aligned_cols=91 Identities=24% Similarity=0.234 Sum_probs=55.5
Q ss_pred EEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--HhcCC-CceeEEE
Q 025107 106 IFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRK-ESYDVII 180 (257)
Q Consensus 106 VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~--l~~~~-~~fDvIi 180 (257)
|+++|+|.-+ +++.+.+ . ..+|+++|.|++.++.+++. .+.++.+|+.+. +++.. ++.|.|+
T Consensus 1 vvI~G~g~~~~~i~~~L~~-~-~~~vvvid~d~~~~~~~~~~-----------~~~~i~gd~~~~~~l~~a~i~~a~~vv 67 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE-G-GIDVVVIDRDPERVEELREE-----------GVEVIYGDATDPEVLERAGIEKADAVV 67 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH-T-TSEEEEEESSHHHHHHHHHT-----------TSEEEES-TTSHHHHHHTTGGCESEEE
T ss_pred eEEEcCCHHHHHHHHHHHh-C-CCEEEEEECCcHHHHHHHhc-----------ccccccccchhhhHHhhcCccccCEEE
Confidence 5777876433 2333333 2 24899999999999888863 256888888654 44433 7899888
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
+...+.. . +..... ..+.+.|...+++..
T Consensus 68 ~~~~~d~-----~---n~~~~~--~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 68 ILTDDDE-----E---NLLIAL--LARELNPDIRIIARV 96 (116)
T ss_dssp EESSSHH-----H---HHHHHH--HHHHHTTTSEEEEEE
T ss_pred EccCCHH-----H---HHHHHH--HHHHHCCCCeEEEEE
Confidence 8765321 1 122222 245677888787765
No 345
>PRK15076 alpha-galactosidase; Provisional
Probab=90.22 E-value=3.3 Score=39.28 Aligned_cols=76 Identities=22% Similarity=0.277 Sum_probs=44.2
Q ss_pred CeEEEEeccc-hHHHH---HHH--hcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE-EcchHHHHhcCCCce
Q 025107 104 KTIFIMGGGE-GSTAR---EIL--RHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV-INDARAELESRKESY 176 (257)
Q Consensus 104 ~~VL~IG~G~-G~~~~---~l~--~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~-~~Da~~~l~~~~~~f 176 (257)
.+|.+||+|+ |.... .++ ......+|+.+|+|++..+.++..+...... .....++. ..|..+-++ .-
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~-~~~~~~i~~ttD~~eal~----dA 76 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAES-LGASAKITATTDRREALQ----GA 76 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHh-cCCCeEEEEECCHHHHhC----CC
Confidence 4799999999 54332 222 1122348999999999888665554321100 12334555 566555443 35
Q ss_pred eEEEEcCC
Q 025107 177 DVIIGDLA 184 (257)
Q Consensus 177 DvIi~D~~ 184 (257)
|+|+...-
T Consensus 77 DfVv~ti~ 84 (431)
T PRK15076 77 DYVINAIQ 84 (431)
T ss_pred CEEeEeee
Confidence 88887664
No 346
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=90.19 E-value=3.5 Score=36.89 Aligned_cols=98 Identities=19% Similarity=0.200 Sum_probs=55.8
Q ss_pred CCCCeEEEEeccch-HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-C-CCcee
Q 025107 101 PNPKTIFIMGGGEG-STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-R-KESYD 177 (257)
Q Consensus 101 ~~~~~VL~IG~G~G-~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~-~~~fD 177 (257)
....+||++|+|+= ..+.++++..+..+|++++.+++-.+.+++. ... .-+.....+ .+.+.. . ...+|
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~-ga~------~~i~~~~~~-~~~~~~~~~~~~~d 233 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL-GAD------FVINSGQDD-VQEIRELTSGAGAD 233 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CCC------EEEcCCcch-HHHHHHHhCCCCCC
Confidence 34689999976432 2345566666654599999999988888764 211 111111122 222222 2 24699
Q ss_pred EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
+|+-.... ...+.. ..+.|+++|.+++-.
T Consensus 234 ~vid~~g~------------~~~~~~-~~~~l~~~G~~v~~g 262 (339)
T cd08239 234 VAIECSGN------------TAARRL-ALEAVRPWGRLVLVG 262 (339)
T ss_pred EEEECCCC------------HHHHHH-HHHHhhcCCEEEEEc
Confidence 98844321 122334 456799999888643
No 347
>PLN02494 adenosylhomocysteinase
Probab=90.16 E-value=4.5 Score=38.75 Aligned_cols=119 Identities=9% Similarity=0.043 Sum_probs=64.3
Q ss_pred CCCeEEEEeccchHHH-HHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 102 NPKTIFIMGGGEGSTA-REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~-~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
..++|+++|+|.=+.. ...++..+ .+|+++|.|+.-...+... . ..+. +..+.+ ...|+|+
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~G-a~VIV~e~dp~r~~eA~~~-G----------~~vv--~leEal----~~ADVVI 314 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAG-ARVIVTEIDPICALQALME-G----------YQVL--TLEDVV----SEADIFV 314 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCchhhHHHHhc-C----------Ceec--cHHHHH----hhCCEEE
Confidence 5789999999864432 22233344 4899999998654444321 0 0111 222333 3579998
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHH-HHHhhhCCceEEEeec
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIY-NTLRQVFKCGCCALFS 251 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~-~~l~~~F~~v~~~~~~ 251 (257)
..... .++...+ ..+.|++||+++ |.+.++..-+...+.+.. -.-+++.|++..|..+
T Consensus 315 ~tTGt-------~~vI~~e-----~L~~MK~GAiLi-NvGr~~~eID~~aL~~~~~l~~~~i~~~vd~y~~~ 373 (477)
T PLN02494 315 TTTGN-------KDIIMVD-----HMRKMKNNAIVC-NIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFP 373 (477)
T ss_pred ECCCC-------ccchHHH-----HHhcCCCCCEEE-EcCCCCCccCHHHHhhccccceeccCCCceEEEcC
Confidence 73211 1233333 345689999886 665432222333333221 1123567888888875
No 348
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=90.03 E-value=3.3 Score=36.28 Aligned_cols=96 Identities=17% Similarity=0.177 Sum_probs=55.7
Q ss_pred CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CCCceeE
Q 025107 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDV 178 (257)
Q Consensus 102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~~~fDv 178 (257)
+.++||++|+|+ |.++.++++..+..+|++++.+++-.+.++++- ... .. +. .+..+.+.. ....+|+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~G-a~~-~i-~~------~~~~~~~~~~~~~~g~d~ 190 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFG-ATA-LA-EP------EVLAERQGGLQNGRGVDV 190 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcC-CcE-ec-Cc------hhhHHHHHHHhCCCCCCE
Confidence 467899998743 224456666666556999999999888888742 110 00 11 111122222 2346998
Q ss_pred EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
|+--... ...++. +.+.|+++|.++.-.
T Consensus 191 vid~~G~------------~~~~~~-~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 191 ALEFSGA------------TAAVRA-CLESLDVGGTAVLAG 218 (280)
T ss_pred EEECCCC------------hHHHHH-HHHHhcCCCEEEEec
Confidence 8743211 123444 467899999888644
No 349
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=90.01 E-value=2.2 Score=35.30 Aligned_cols=100 Identities=17% Similarity=0.289 Sum_probs=58.2
Q ss_pred eEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh--c----cCCCC-------CCCeEEEEcchHHHH
Q 025107 105 TIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV--N----KEAFS-------DPRLELVINDARAEL 169 (257)
Q Consensus 105 ~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~--~----~~~~~-------~~rv~i~~~Da~~~l 169 (257)
+|.+||+|.=+ ++..++.. + .+|+.+|.+++.++.+++++.. . ...+. -.++++ ..|.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-G-~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl---- 73 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-G-YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDL---- 73 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-T-SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSG----
T ss_pred CEEEEcCCHHHHHHHHHHHhC-C-CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCH----
Confidence 58899997654 34444443 4 5999999999999998887542 1 01111 123332 2232
Q ss_pred hcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025107 170 ESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (257)
Q Consensus 170 ~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~ 220 (257)
... ...|+|+=..++.. -.-+++|++ +.+.+.|+-+++.|+.
T Consensus 74 ~~~-~~adlViEai~E~l-------~~K~~~~~~-l~~~~~~~~ilasnTS 115 (180)
T PF02737_consen 74 EEA-VDADLVIEAIPEDL-------ELKQELFAE-LDEICPPDTILASNTS 115 (180)
T ss_dssp GGG-CTESEEEE-S-SSH-------HHHHHHHHH-HHCCS-TTSEEEE--S
T ss_pred HHH-hhhheehhhccccH-------HHHHHHHHH-HHHHhCCCceEEecCC
Confidence 112 26799887655321 124688999 8999999999999864
No 350
>PRK10458 DNA cytosine methylase; Provisional
Probab=89.93 E-value=4.2 Score=38.97 Aligned_cols=129 Identities=16% Similarity=0.151 Sum_probs=77.4
Q ss_pred CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH-------------
Q 025107 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL------------- 169 (257)
Q Consensus 103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l------------- 169 (257)
.-+++++-||.|++..-+... +...|-++|+|+...+.-+.++.. +|....+.+|..+.-
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G~~~v~a~Eid~~A~~TY~~N~~~------~p~~~~~~~DI~~i~~~~~~~~~~~~~~ 160 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-GGQCVFTSEWNKHAVRTYKANWYC------DPATHRFNEDIRDITLSHKEGVSDEEAA 160 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-CCEEEEEEechHHHHHHHHHHcCC------CCccceeccChhhCccccccccchhhhh
Confidence 358999999999998887664 456788999999999998887631 123333445544432
Q ss_pred ---hcCCCceeEEEEcCCC-CCC-CC----------------cccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCCh
Q 025107 170 ---ESRKESYDVIIGDLAD-PIE-GG----------------PCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHT 228 (257)
Q Consensus 170 ---~~~~~~fDvIi~D~~~-~~~-~~----------------p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~ 228 (257)
.......|+++.-+|- +.+ .+ +...| -.++++. + +.++|.-+++=|+..--.....
T Consensus 161 ~~~~~~~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~L-f~~~~ri-i-~~~kPk~fvlENV~gl~s~~~g 237 (467)
T PRK10458 161 EHIRQHIPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTL-FFDVARI-I-DAKRPAIFVLENVKNLKSHDKG 237 (467)
T ss_pred hhhhccCCCCCEEEEcCCCCccchhcccccccccccccccCCccccH-HHHHHHH-H-HHhCCCEEEEeCcHhhhccccc
Confidence 1112368998887762 221 01 00112 2466664 3 4678886666454211001233
Q ss_pred HHHHHHHHHHhhh
Q 025107 229 EVFSCIYNTLRQV 241 (257)
Q Consensus 229 ~~~~~~~~~l~~~ 241 (257)
..+..+++.|.+.
T Consensus 238 ~~f~~i~~~L~~l 250 (467)
T PRK10458 238 KTFRIIMQTLDEL 250 (467)
T ss_pred HHHHHHHHHHHHc
Confidence 5677888888764
No 351
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=89.81 E-value=2 Score=38.09 Aligned_cols=100 Identities=19% Similarity=0.314 Sum_probs=58.5
Q ss_pred CeEEEEecc--chHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh--------c-cCCCC-------CCCeEEEEcch
Q 025107 104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV--------N-KEAFS-------DPRLELVINDA 165 (257)
Q Consensus 104 ~~VL~IG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~--------~-~~~~~-------~~rv~i~~~Da 165 (257)
++|.+||+| ++.++..++++ + .+|+++|.+++.++.+++.... . ..... ..+++.. .|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-G-~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-G-YDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH
Confidence 689999999 34455666554 3 4899999999999876553211 0 00000 0122221 222
Q ss_pred HHHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 166 RAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 166 ~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
+-+ ...|+|+...+... -...++++. +.+.++|+.+++.+.
T Consensus 81 -~~~----~~aDlVieav~e~~-------~~k~~~~~~-l~~~~~~~~il~S~t 121 (291)
T PRK06035 81 -ESL----SDADFIVEAVPEKL-------DLKRKVFAE-LERNVSPETIIASNT 121 (291)
T ss_pred -HHh----CCCCEEEEcCcCcH-------HHHHHHHHH-HHhhCCCCeEEEEcC
Confidence 212 34699998765321 113567777 677888888777554
No 352
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=89.77 E-value=0.53 Score=38.63 Aligned_cols=107 Identities=18% Similarity=0.249 Sum_probs=63.7
Q ss_pred EEEeccchHHHHHHHhcCC-CcEEEEEECCH--HHHHHHH---hhhhhccCCCCCCCeEE-EEcchHHHHhc---CCCce
Q 025107 107 FIMGGGEGSTAREILRHKT-VEKVVMCDIDE--EVVEFCK---SYLVVNKEAFSDPRLEL-VINDARAELES---RKESY 176 (257)
Q Consensus 107 L~IG~G~G~~~~~l~~~~~-~~~v~~VEid~--~vi~~a~---~~~~~~~~~~~~~rv~i-~~~Da~~~l~~---~~~~f 176 (257)
|.+|=|.-+.+..++++.+ ..++++--.|. ++.+... +++.. +....+++ +.-||.+.-.. ...+|
T Consensus 1 LlvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~----L~~~g~~V~~~VDat~l~~~~~~~~~~F 76 (166)
T PF10354_consen 1 LLVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEE----LRELGVTVLHGVDATKLHKHFRLKNQRF 76 (166)
T ss_pred CeeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHH----HhhcCCccccCCCCCcccccccccCCcC
Confidence 6789999999999988644 45666554444 4433322 22221 22344443 34566554332 34789
Q ss_pred eEEEEcCCCCCCC---Cc----ccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 177 DVIIGDLADPIEG---GP----CYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 177 DvIi~D~~~~~~~---~p----~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
|.|+.+-|..... .. ...-+-..||+. ++++|+++|.+.+-
T Consensus 77 DrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~S-a~~~L~~~G~IhVT 124 (166)
T PF10354_consen 77 DRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKS-ASQLLKPDGEIHVT 124 (166)
T ss_pred CEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEE
Confidence 9999998853210 00 011123689999 79999999976654
No 353
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=89.71 E-value=0.094 Score=46.95 Aligned_cols=79 Identities=18% Similarity=0.123 Sum_probs=60.3
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.....|.|+=+|-|+++.-.+-+.+++.|.++|.+|..++..|+.+..+. ...|..++.+|-|.- ......|.|.
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~---V~~r~~i~~gd~R~~--~~~~~AdrVn 267 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANN---VMDRCRITEGDNRNP--KPRLRADRVN 267 (351)
T ss_pred cccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcc---hHHHHHhhhcccccc--Cccccchhee
Confidence 34578899999999998833334578899999999999999999987663 356777888886542 2346788888
Q ss_pred EcCC
Q 025107 181 GDLA 184 (257)
Q Consensus 181 ~D~~ 184 (257)
+-+-
T Consensus 268 LGLl 271 (351)
T KOG1227|consen 268 LGLL 271 (351)
T ss_pred eccc
Confidence 8764
No 354
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=89.67 E-value=1.3 Score=41.76 Aligned_cols=76 Identities=22% Similarity=0.292 Sum_probs=43.8
Q ss_pred eEEEEeccchHHH-HH---HHhc--CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE-EcchHHHHhcCCCcee
Q 025107 105 TIFIMGGGEGSTA-RE---ILRH--KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV-INDARAELESRKESYD 177 (257)
Q Consensus 105 ~VL~IG~G~G~~~-~~---l~~~--~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~-~~Da~~~l~~~~~~fD 177 (257)
+|.+||+|+-+.+ .. ++.. ....+|..+|+|++.++...+........ .....++. ..|..+-+ ...|
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~-~~~~~~I~~ttD~~eal----~~AD 76 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEE-LGAPLKIEATTDRREAL----DGAD 76 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHh-cCCCeEEEEeCCHHHHh----cCCC
Confidence 6899999994433 22 3311 12248999999999888766544211000 11223443 55654444 3469
Q ss_pred EEEEcCCC
Q 025107 178 VIIGDLAD 185 (257)
Q Consensus 178 vIi~D~~~ 185 (257)
+|+.....
T Consensus 77 ~Vi~ai~~ 84 (423)
T cd05297 77 FVINTIQV 84 (423)
T ss_pred EEEEeeEe
Confidence 98888763
No 355
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=89.49 E-value=2.7 Score=37.28 Aligned_cols=97 Identities=22% Similarity=0.332 Sum_probs=58.4
Q ss_pred CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCceeE
Q 025107 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYDV 178 (257)
Q Consensus 101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fDv 178 (257)
....+||+.|+|. |..+.++++..+ .+|++++.+++..+.++++ ... .-+.....+....++. ..+.+|+
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G-~~V~~~~~s~~~~~~~~~~-g~~------~~~~~~~~~~~~~~~~~~~~~~D~ 235 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMG-AAVIAVDIKEEKLELAKEL-GAD------EVLNSLDDSPKDKKAAGLGGGFDV 235 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHh-CCC------EEEcCCCcCHHHHHHHhcCCCceE
Confidence 3457899987653 666777777655 5799999999988888663 211 1111111222232322 3457998
Q ss_pred EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
|+..... .+.++. +.+.|+++|.++.-
T Consensus 236 vid~~g~------------~~~~~~-~~~~l~~~G~~v~~ 262 (338)
T cd08254 236 IFDFVGT------------QPTFED-AQKAVKPGGRIVVV 262 (338)
T ss_pred EEECCCC------------HHHHHH-HHHHhhcCCEEEEE
Confidence 8743211 134556 57889999998864
No 356
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.47 E-value=1.7 Score=35.79 Aligned_cols=31 Identities=32% Similarity=0.444 Sum_probs=23.0
Q ss_pred eEEEEeccc-hHH-HHHHHhcCCCcEEEEEECCH
Q 025107 105 TIFIMGGGE-GST-AREILRHKTVEKVVMCDIDE 136 (257)
Q Consensus 105 ~VL~IG~G~-G~~-~~~l~~~~~~~~v~~VEid~ 136 (257)
+|+++|+|+ |+. +..+++ .+..+++.+|-|.
T Consensus 1 ~VlViG~GglGs~ia~~La~-~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLAR-SGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHH-cCCCeEEEEeCCE
Confidence 589999984 443 444444 5788999999986
No 357
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=89.43 E-value=1.2 Score=37.59 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=29.6
Q ss_pred CCCCCeEEEEecc-chHHHHHHHhcCCCcEEEEEECCHHH
Q 025107 100 HPNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEV 138 (257)
Q Consensus 100 ~~~~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~v 138 (257)
.+.+++||++|.- +|....+++.. ..+|+++|+.|.+
T Consensus 42 ~~E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~p~~ 79 (254)
T COG4017 42 GEEFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIHPFM 79 (254)
T ss_pred ccCcceEEEEEeeehhHHHHHHhcc--cceEEEecCCHHH
Confidence 4678999999974 56667777764 4699999999987
No 358
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=89.30 E-value=1.6 Score=39.72 Aligned_cols=124 Identities=19% Similarity=0.234 Sum_probs=79.5
Q ss_pred CCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCC-C-ceeEEE
Q 025107 103 PKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-E-SYDVII 180 (257)
Q Consensus 103 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~-~-~fDvIi 180 (257)
..+++++-+|.|++..-+... +..-+.++|+||..++.-+.+++. -.++..|..++....- . .+|+|+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a-gf~~~~a~Eid~~a~~ty~~n~~~---------~~~~~~di~~~~~~~~~~~~~Dvli 72 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA-GFEIVFANEIDPPAVATYKANFPH---------GDIILGDIKELDGEALRKSDVDVLI 72 (328)
T ss_pred CceEEeeccCCchHHHHHHhc-CCeEEEEEecCHHHHHHHHHhCCC---------CceeechHhhcChhhccccCCCEEE
Confidence 357999999999988776664 456788999999999999988753 3556677666554322 2 789999
Q ss_pred EcCCC-CCC--------CCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCC-hHHHHHHHHHHhhh
Q 025107 181 GDLAD-PIE--------GGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSH-TEVFSCIYNTLRQV 241 (257)
Q Consensus 181 ~D~~~-~~~--------~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~-~~~~~~~~~~l~~~ 241 (257)
--+|- +.+ ..+-..| ..++.+. -..++|.-.++=|+ |+.... ...+..+.+.|.+.
T Consensus 73 gGpPCQ~FS~aG~r~~~~D~R~~L-~~~~~r~--I~~~~P~~fv~ENV--~gl~~~~~~~~~~i~~~L~~~ 138 (328)
T COG0270 73 GGPPCQDFSIAGKRRGYDDPRGSL-FLEFIRL--IEQLRPKFFVLENV--KGLLSSKGQTFDEIKKELEEL 138 (328)
T ss_pred eCCCCcchhhcCcccCCcCcccee-eHHHHHH--HHhhCCCEEEEecC--chHHhcCchHHHHHHHHHHHc
Confidence 88872 111 1222233 4677775 35788843333232 332221 34667777777765
No 359
>PTZ00117 malate dehydrogenase; Provisional
Probab=89.29 E-value=11 Score=34.00 Aligned_cols=109 Identities=22% Similarity=0.294 Sum_probs=58.3
Q ss_pred CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh-hhhccCCCCCCCeEEEE-cchHHHHhcCCCceeE
Q 025107 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSY-LVVNKEAFSDPRLELVI-NDARAELESRKESYDV 178 (257)
Q Consensus 102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~-~~~~~~~~~~~rv~i~~-~Da~~~l~~~~~~fDv 178 (257)
+..+|.+||+|. |.....++...+..++..+|++++..+ +... +... ........++.. +|-. -+ ..-|+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~-g~~lDl~~~-~~~~~~~~~i~~~~d~~-~l----~~ADi 76 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQ-GKALDLKHF-STLVGSNINILGTNNYE-DI----KDSDV 76 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccch-hHHHHHhhh-ccccCCCeEEEeCCCHH-Hh----CCCCE
Confidence 456899999988 776666555444457999999987654 2221 1111 111222345543 4532 22 34599
Q ss_pred EEEcCCCCCCCCcc-cCC------chHHHHHHHHcCcCCCCcEEEEec
Q 025107 179 IIGDLADPIEGGPC-YKL------YTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 179 Ii~D~~~~~~~~p~-~~L------~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
|+...-.+...+.. ..+ .-+++.+. +.+ ..|++++++-.
T Consensus 77 VVitag~~~~~g~~r~dll~~n~~i~~~i~~~-i~~-~~p~a~vivvs 122 (319)
T PTZ00117 77 VVITAGVQRKEEMTREDLLTINGKIMKSVAES-VKK-YCPNAFVICVT 122 (319)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHH-HCCCeEEEEec
Confidence 99876432211110 011 12355555 444 46899766543
No 360
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.27 E-value=1.6 Score=38.96 Aligned_cols=101 Identities=12% Similarity=0.303 Sum_probs=62.5
Q ss_pred CeEEEEecc--chHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc------cCCCCC-------CCeEEEEcchHHH
Q 025107 104 KTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFSD-------PRLELVINDARAE 168 (257)
Q Consensus 104 ~~VL~IG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~------~~~~~~-------~rv~i~~~Da~~~ 168 (257)
++|-+||+| +..++..+++. + -+|+.+|.+++.++.+++..... ...... .|+++ ..|. +-
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~-~~ 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA-G-VDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDL-GD 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCH-HH
Confidence 589999999 55567666664 4 58999999999998877654211 000100 12222 2332 22
Q ss_pred HhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcC-CCCcEEEEecC
Q 025107 169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRL-NPEGIFVTQAG 220 (257)
Q Consensus 169 l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L-~pgGil~~~~~ 220 (257)
+ ...|+|+-..++.. -...+.|.. +.+.+ +|+.+++.|+.
T Consensus 82 ~----~~~d~ViEav~E~~-------~~K~~l~~~-l~~~~~~~~~il~snTS 122 (286)
T PRK07819 82 F----ADRQLVIEAVVEDE-------AVKTEIFAE-LDKVVTDPDAVLASNTS 122 (286)
T ss_pred h----CCCCEEEEecccCH-------HHHHHHHHH-HHHhhCCCCcEEEECCC
Confidence 2 45689988766421 123566777 67777 78888887754
No 361
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.25 E-value=1.8 Score=37.42 Aligned_cols=35 Identities=31% Similarity=0.399 Sum_probs=26.7
Q ss_pred CCCeEEEEecc-chHHHHHHHhcCCCcEEEEEECCH
Q 025107 102 NPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDE 136 (257)
Q Consensus 102 ~~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~ 136 (257)
...+||++|+| .|+...+.+...++.+++.+|-|.
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 45789999997 455555555557889999999875
No 362
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=89.24 E-value=2.1 Score=41.35 Aligned_cols=104 Identities=14% Similarity=0.281 Sum_probs=64.7
Q ss_pred CCCeEEEEecc--chHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh-----c-cCCCC-------CCCeEEEEcchH
Q 025107 102 NPKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-----N-KEAFS-------DPRLELVINDAR 166 (257)
Q Consensus 102 ~~~~VL~IG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~-----~-~~~~~-------~~rv~i~~~Da~ 166 (257)
+-++|-+||+| +++++..+++. + -.|+++|.+++.++.++++... . .+.+. -.|++.. .|..
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~a-G-~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~ 82 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQA-G-HTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EALA 82 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHH
Confidence 45789999999 44566776664 3 4899999999999987665431 1 00000 0133333 2322
Q ss_pred HHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCC
Q 025107 167 AELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (257)
Q Consensus 167 ~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~ 221 (257)
. + ..-|+||-..++.. -....+|.. +.+.++|+.+++.|+.+
T Consensus 83 ~-~----~~aDlViEav~E~~-------~vK~~vf~~-l~~~~~~~ailasntSt 124 (507)
T PRK08268 83 D-L----ADCDLVVEAIVERL-------DVKQALFAQ-LEAIVSPDCILATNTSS 124 (507)
T ss_pred H-h----CCCCEEEEcCcccH-------HHHHHHHHH-HHhhCCCCcEEEECCCC
Confidence 1 2 35799998877532 113456677 67778888888877643
No 363
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=89.14 E-value=11 Score=33.80 Aligned_cols=109 Identities=22% Similarity=0.337 Sum_probs=55.0
Q ss_pred CeEEEEeccc-hHHHHHHHhcCCC-cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025107 104 KTIFIMGGGE-GSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (257)
Q Consensus 104 ~~VL~IG~G~-G~~~~~l~~~~~~-~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~ 181 (257)
++|.+||+|. |......+...+. .++..+|++++..+....-+.... ........+...|..+ + ...|+|++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~-~~~~~~~~i~~~~~~~-l----~~aDIVIi 74 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDAL-AFLPSPVKIKAGDYSD-C----KDADIVVI 74 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHh-hccCCCeEEEcCCHHH-h----CCCCEEEE
Confidence 3799999976 3333333333333 389999999887554333221110 0112334555455332 2 56899999
Q ss_pred cCCCCCCCCcc-cCCc--hHHHHHHH---HcCcCCCCcEEEEec
Q 025107 182 DLADPIEGGPC-YKLY--TKSFYEFV---VKPRLNPEGIFVTQA 219 (257)
Q Consensus 182 D~~~~~~~~p~-~~L~--t~ef~~~~---~~~~L~pgGil~~~~ 219 (257)
-...|...+.. ..|+ +.+.++.+ ++ .-.|+|++++-.
T Consensus 75 tag~~~~~g~~R~dll~~N~~i~~~~~~~i~-~~~~~~~vivvs 117 (306)
T cd05291 75 TAGAPQKPGETRLDLLEKNAKIMKSIVPKIK-ASGFDGIFLVAS 117 (306)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HhCCCeEEEEec
Confidence 87644321111 1122 12333331 23 367889876543
No 364
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=89.10 E-value=3.7 Score=33.60 Aligned_cols=119 Identities=13% Similarity=0.159 Sum_probs=58.4
Q ss_pred CCCCeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025107 101 PNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv 178 (257)
...|+++++|.|.=+ .++.+... + .+|+++|+||.- ..+.... -.++. +..+-+ ...|+
T Consensus 21 l~Gk~vvV~GYG~vG~g~A~~lr~~-G-a~V~V~e~DPi~--alqA~~d---------Gf~v~--~~~~a~----~~adi 81 (162)
T PF00670_consen 21 LAGKRVVVIGYGKVGKGIARALRGL-G-ARVTVTEIDPIR--ALQAAMD---------GFEVM--TLEEAL----RDADI 81 (162)
T ss_dssp -TTSEEEEE--SHHHHHHHHHHHHT-T--EEEEE-SSHHH--HHHHHHT---------T-EEE---HHHHT----TT-SE
T ss_pred eCCCEEEEeCCCcccHHHHHHHhhC-C-CEEEEEECChHH--HHHhhhc---------CcEec--CHHHHH----hhCCE
Confidence 467899999998755 34444443 4 699999999943 3333321 11222 222222 46798
Q ss_pred EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeec
Q 025107 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFS 251 (257)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~ 251 (257)
|+...- . ....+.+.|+. || +|.++.|.++.+..-+...+.+....-.++=|++..|..+
T Consensus 82 ~vtaTG------~-~~vi~~e~~~~-----mk-dgail~n~Gh~d~Eid~~~L~~~~~~~~~v~~~v~~y~l~ 141 (162)
T PF00670_consen 82 FVTATG------N-KDVITGEHFRQ-----MK-DGAILANAGHFDVEIDVDALEANAVEREEVRPQVDRYTLP 141 (162)
T ss_dssp EEE-SS------S-SSSB-HHHHHH-----S--TTEEEEESSSSTTSBTHHHHHTCTSEEEEEETTEEEEEET
T ss_pred EEECCC------C-ccccCHHHHHH-----hc-CCeEEeccCcCceeEeeccccccCcEEEEcCCCeeEEEeC
Confidence 887532 1 23446666665 44 5666678876533223333222211122345677777664
No 365
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.02 E-value=4.1 Score=36.11 Aligned_cols=102 Identities=22% Similarity=0.271 Sum_probs=60.3
Q ss_pred CeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh------ccCCCC--------CCCeEEEEcchHH
Q 025107 104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV------NKEAFS--------DPRLELVINDARA 167 (257)
Q Consensus 104 ~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~------~~~~~~--------~~rv~i~~~Da~~ 167 (257)
++|.+||+|.-+ ++..+++. + .+|+.+|.+++.++.+++.... ....+. ..++++ ..|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-G-~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~ 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-G-FDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAE 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHH
Confidence 579999998543 44444443 3 4899999999998887765310 000010 023332 244333
Q ss_pred HHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025107 168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (257)
Q Consensus 168 ~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~ 220 (257)
.+ +.-|+||...+... -...+++++ +.+.++++-+++.+..
T Consensus 81 a~----~~aDlVieavpe~~-------~~k~~~~~~-l~~~~~~~~ii~sntS 121 (287)
T PRK08293 81 AV----KDADLVIEAVPEDP-------EIKGDFYEE-LAKVAPEKTIFATNSS 121 (287)
T ss_pred Hh----cCCCEEEEeccCCH-------HHHHHHHHH-HHhhCCCCCEEEECcc
Confidence 33 34699998766321 123566777 6777887877766643
No 366
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=88.92 E-value=1.4 Score=37.73 Aligned_cols=35 Identities=31% Similarity=0.453 Sum_probs=24.1
Q ss_pred CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCH
Q 025107 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE 136 (257)
Q Consensus 102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~ 136 (257)
..++|+++|||+ |+.....+...++.+++.+|-|.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 457999999984 44333333345788999997664
No 367
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=88.90 E-value=7.8 Score=35.37 Aligned_cols=133 Identities=20% Similarity=0.231 Sum_probs=77.6
Q ss_pred CeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh---hhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY---LVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 104 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~---~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
.+|-+||.|+-+++...+-......|+..-.+++.++..+.. -....+....+++. ...|..+-+ +..|+|+
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~-at~Dl~~a~----~~ad~iv 76 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLK-ATTDLAEAL----DGADIIV 76 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccc-cccCHHHHH----hcCCEEE
Confidence 579999999877654433322225899999999998876553 11111111222332 335555554 3489999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeecCccc
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSYSF 255 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~~~~ 255 (257)
+-.|+ .+.++..++ ++..|+++-.++.-.- + + .+.....+.+.+++..|.-.....+.|||
T Consensus 77 ~avPs---------~~~r~v~~~-l~~~l~~~~~iv~~sK--G-i-e~~t~~l~seii~e~l~~~~~~vLSGPs~ 137 (329)
T COG0240 77 IAVPS---------QALREVLRQ-LKPLLLKDAIIVSATK--G-L-EPETGRLLSEIIEEELPDNPIAVLSGPSF 137 (329)
T ss_pred EECCh---------HHHHHHHHH-HhhhccCCCeEEEEec--c-c-cCCCcchHHHHHHHHcCCCeEEEEECccH
Confidence 88653 234677777 6667777665553221 1 1 11223455566777777655667788776
No 368
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=88.80 E-value=2.5 Score=35.65 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=24.4
Q ss_pred CCCeEEEEeccchH--HHHHHHhcCCCcEEEEEECC
Q 025107 102 NPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDID 135 (257)
Q Consensus 102 ~~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid 135 (257)
..++|+++|+|+-+ ++..+++ .++.+++.+|.|
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~-~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLAR-AGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHH-cCCCEEEEECCC
Confidence 46789999998533 3444444 577899999998
No 369
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=88.79 E-value=2.1 Score=36.01 Aligned_cols=35 Identities=17% Similarity=0.380 Sum_probs=24.6
Q ss_pred CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCH
Q 025107 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE 136 (257)
Q Consensus 102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~ 136 (257)
...+||++|+|+ |+-..+.+...++.+++.+|-|.
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 457899999985 33333333346889999998774
No 370
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=88.71 E-value=4.4 Score=37.19 Aligned_cols=132 Identities=12% Similarity=0.171 Sum_probs=70.0
Q ss_pred eEEEEeccchHHHHHHHhcCCC--------cEEEEEEC-----CHHHHHHHHhhhhh----ccCCCCCCCeEEEEcchHH
Q 025107 105 TIFIMGGGEGSTAREILRHKTV--------EKVVMCDI-----DEEVVEFCKSYLVV----NKEAFSDPRLELVINDARA 167 (257)
Q Consensus 105 ~VL~IG~G~G~~~~~l~~~~~~--------~~v~~VEi-----d~~vi~~a~~~~~~----~~~~~~~~rv~i~~~Da~~ 167 (257)
+|.+||+|..+.+....-.... .+|+.... +++..+..++.... ++-. ..++++. ..|..+
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~-Lp~~i~a-t~dl~e 78 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIK-LPANLVA-VPDLVE 78 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCc-CCCCeEE-ECCHHH
Confidence 5789999998876543221112 47888876 66777766553221 1100 1234444 356555
Q ss_pred HHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEE
Q 025107 168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCC 247 (257)
Q Consensus 168 ~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~ 247 (257)
.++ .-|+|++-.++. .-+++.+. ++..|+++-.++ .. +.+..........+.+.+++.++ ...
T Consensus 79 al~----~ADiIIlAVPs~---------~i~~vl~~-l~~~l~~~~~iV-s~-tKGie~~~~~~~~~se~i~e~l~-~~~ 141 (342)
T TIGR03376 79 AAK----GADILVFVIPHQ---------FLEGICKQ-LKGHVKPNARAI-SC-IKGLEVSKDGVKLLSDIIEEELG-IPC 141 (342)
T ss_pred HHh----cCCEEEEECChH---------HHHHHHHH-HHhhcCCCCEEE-EE-eCCcccCCCcCccHHHHHHHHhC-CCe
Confidence 553 458998876532 23577787 688887654443 32 12211110123344455555553 244
Q ss_pred EeecCccc
Q 025107 248 ALFSSYSF 255 (257)
Q Consensus 248 ~~~~~~~~ 255 (257)
...+.|+|
T Consensus 142 ~~lsGP~~ 149 (342)
T TIGR03376 142 GVLSGANL 149 (342)
T ss_pred EEeeCcch
Confidence 44566665
No 371
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=88.69 E-value=1.4 Score=40.90 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=25.7
Q ss_pred CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECC
Q 025107 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDID 135 (257)
Q Consensus 101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid 135 (257)
...++||++|+|+ |+.....+...++.+++.+|-|
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3567999999984 4444444444678899999998
No 372
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=88.67 E-value=2.2 Score=37.91 Aligned_cols=102 Identities=18% Similarity=0.236 Sum_probs=59.8
Q ss_pred CCeEEEEecc--chHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh-----hcc-CCCCC-------CCeEEEEcchHH
Q 025107 103 PKTIFIMGGG--EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-----VNK-EAFSD-------PRLELVINDARA 167 (257)
Q Consensus 103 ~~~VL~IG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~-----~~~-~~~~~-------~rv~i~~~Da~~ 167 (257)
-++|.+||+| +..++..+++. + .+|+++|.+++.++.+++.+. +.. ..... .+++ ...|. +
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~-G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~-~ 79 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA-G-MDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNL-E 79 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCH-H
Confidence 3689999998 44566666664 3 589999999999886655432 100 00000 1122 22232 2
Q ss_pred HHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025107 168 ELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (257)
Q Consensus 168 ~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~ 220 (257)
-+ +.-|+|+...++. + -....+++. +.+.++|+.+++.++.
T Consensus 80 ~~----~~aD~Vieav~e~----~---~~k~~v~~~-l~~~~~~~~il~s~tS 120 (295)
T PLN02545 80 EL----RDADFIIEAIVES----E---DLKKKLFSE-LDRICKPSAILASNTS 120 (295)
T ss_pred Hh----CCCCEEEEcCccC----H---HHHHHHHHH-HHhhCCCCcEEEECCC
Confidence 22 3469999887642 1 113456676 5777888887776653
No 373
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=88.46 E-value=2.1 Score=33.69 Aligned_cols=31 Identities=32% Similarity=0.568 Sum_probs=21.8
Q ss_pred eEEEEeccc-hH-HHHHHHhcCCCcEEEEEECCH
Q 025107 105 TIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDE 136 (257)
Q Consensus 105 ~VL~IG~G~-G~-~~~~l~~~~~~~~v~~VEid~ 136 (257)
+||++|+|+ |+ ++..|++ .+..+++.+|-|.
T Consensus 1 ~VliiG~GglGs~ia~~L~~-~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLAR-SGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHH-CCCCEEEEEcCCC
Confidence 589999973 33 3444444 5778999999873
No 374
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=88.41 E-value=0.71 Score=37.66 Aligned_cols=104 Identities=20% Similarity=0.197 Sum_probs=54.7
Q ss_pred CCCeEEEEeccchH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCC-C--CCCCeEEEEcchHHH---------
Q 025107 102 NPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA-F--SDPRLELVINDARAE--------- 168 (257)
Q Consensus 102 ~~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~-~--~~~rv~i~~~Da~~~--------- 168 (257)
+|.+|+++|.|.=+ .+.++++.-+ .+++..|..++..+..+......-.. + ...+-. -|-..|
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lG-a~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 94 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLG-AEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKD---FDKADYYEHPESYES 94 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB----CCHHHCHHHCCHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCC-CEEEeccCCHHHHHhhhcccCceEEEcccccccccc---cchhhhhHHHHHhHH
Confidence 57899999998654 3555555445 58999999999888777654321000 0 000001 111111
Q ss_pred -HhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEE
Q 025107 169 -LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (257)
Q Consensus 169 -l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~ 216 (257)
+.+.-..+|+||....-+.... ..|.|++..+. |+|+-+++
T Consensus 95 ~f~~~i~~~d~vI~~~~~~~~~~--P~lvt~~~~~~-----m~~gsvIv 136 (168)
T PF01262_consen 95 NFAEFIAPADIVIGNGLYWGKRA--PRLVTEEMVKS-----MKPGSVIV 136 (168)
T ss_dssp HHHHHHHH-SEEEEHHHBTTSS-----SBEHHHHHT-----SSTTEEEE
T ss_pred HHHHHHhhCcEEeeecccCCCCC--CEEEEhHHhhc-----cCCCceEE
Confidence 1111257899998654322223 37889886664 55665554
No 375
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=88.35 E-value=1.6 Score=41.83 Aligned_cols=129 Identities=12% Similarity=0.102 Sum_probs=72.0
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
..-++|+|+.+|.|+++..|...+ |.+.-.-|. .....++. .++..=+- +.-|=-+-+.+-+.+||+|=
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~~----VWVMNVVP~---~~~ntL~v---IydRGLIG-~yhDWCE~fsTYPRTYDLlH 432 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDDP----VWVMNVVPV---SGPNTLPV---IYDRGLIG-VYHDWCEAFSTYPRTYDLLH 432 (506)
T ss_pred cceeeeeeecccccHHHHHhccCC----ceEEEeccc---CCCCcchh---hhhcccch-hccchhhccCCCCcchhhee
Confidence 345899999999999999988753 333322121 11111110 01000011 11122222334568999997
Q ss_pred EcC-CCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeecC
Q 025107 181 GDL-ADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSS 252 (257)
Q Consensus 181 ~D~-~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~ 252 (257)
.+. ++... .. ---...+-+ +.|+|+|+|.+++.. ....+..+.+.+++.--++..+..+.
T Consensus 433 A~~lfs~~~-~r---C~~~~illE-mDRILRP~G~~iiRD-------~~~vl~~v~~i~~~lrW~~~~~d~e~ 493 (506)
T PF03141_consen 433 ADGLFSLYK-DR---CEMEDILLE-MDRILRPGGWVIIRD-------TVDVLEKVKKIAKSLRWEVRIHDTED 493 (506)
T ss_pred hhhhhhhhc-cc---ccHHHHHHH-hHhhcCCCceEEEec-------cHHHHHHHHHHHHhCcceEEEEecCC
Confidence 764 33221 11 122456666 799999999999863 34455666666666666777766654
No 376
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.33 E-value=3.5 Score=36.86 Aligned_cols=101 Identities=18% Similarity=0.328 Sum_probs=56.9
Q ss_pred CeEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCC--------CCeEEEEcchHHHHhcCC
Q 025107 104 KTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSD--------PRLELVINDARAELESRK 173 (257)
Q Consensus 104 ~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~--------~rv~i~~~Da~~~l~~~~ 173 (257)
++|.+||+|. +.++..+++. + .+|+++|.+++.++.+++........... .+++. ..|..+.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~---- 77 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-G-LQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAAV---- 77 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHHh----
Confidence 6899999984 4455666553 3 48999999999998877643210000000 11222 23332222
Q ss_pred CceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 174 ESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 174 ~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
+..|+|+...+... -...+++.. +...++++-+++.+.
T Consensus 78 ~~aDlVi~av~~~~-------~~~~~v~~~-l~~~~~~~~ii~s~t 115 (311)
T PRK06130 78 SGADLVIEAVPEKL-------ELKRDVFAR-LDGLCDPDTIFATNT 115 (311)
T ss_pred ccCCEEEEeccCcH-------HHHHHHHHH-HHHhCCCCcEEEECC
Confidence 35699998765321 113456666 566666666665444
No 377
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=88.31 E-value=2.8 Score=40.86 Aligned_cols=80 Identities=24% Similarity=0.368 Sum_probs=57.8
Q ss_pred CCCeEEEEeccchHHHHHHHhc---CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc----CCC
Q 025107 102 NPKTIFIMGGGEGSTAREILRH---KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES----RKE 174 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~---~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~----~~~ 174 (257)
..|+||+-|+| |++..++.+. .+.+++..+|.|+.-+..-++.+... +...++.++.+|.++.-+- .+-
T Consensus 249 ~gK~vLVTGag-GSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~---~~~~~~~~~igdVrD~~~~~~~~~~~ 324 (588)
T COG1086 249 TGKTVLVTGGG-GSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREK---FPELKLRFYIGDVRDRDRVERAMEGH 324 (588)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhh---CCCcceEEEecccccHHHHHHHHhcC
Confidence 56888888876 7766555441 24579999999999888877766432 1357889999999886432 234
Q ss_pred ceeEEEEcCCC
Q 025107 175 SYDVIIGDLAD 185 (257)
Q Consensus 175 ~fDvIi~D~~~ 185 (257)
+.|+|++.+..
T Consensus 325 kvd~VfHAAA~ 335 (588)
T COG1086 325 KVDIVFHAAAL 335 (588)
T ss_pred CCceEEEhhhh
Confidence 69999998863
No 378
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=88.18 E-value=5.8 Score=35.37 Aligned_cols=96 Identities=16% Similarity=0.263 Sum_probs=56.4
Q ss_pred CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
+..+||+.|+|+ |..+.++++..+..++++++.+++..+.+++. ... .-+.....+..... .....+|+|+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~-g~~------~vi~~~~~~~~~~~-~~~~~vd~vl 236 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM-GAD------ETVNLARDPLAAYA-ADKGDFDVVF 236 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CCC------EEEcCCchhhhhhh-ccCCCccEEE
Confidence 568899988765 55666777766655789999988888877764 211 00000011112221 1224599987
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
.-... ...++. +.+.|+++|.++.-
T Consensus 237 d~~g~------------~~~~~~-~~~~L~~~G~~v~~ 261 (339)
T cd08232 237 EASGA------------PAALAS-ALRVVRPGGTVVQV 261 (339)
T ss_pred ECCCC------------HHHHHH-HHHHHhcCCEEEEE
Confidence 54221 123455 56788999988853
No 379
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=88.13 E-value=3.3 Score=37.15 Aligned_cols=96 Identities=19% Similarity=0.153 Sum_probs=53.9
Q ss_pred CeEEEEeccc-hH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhh--hhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025107 104 KTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDEEVVEFCKSY--LVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 104 ~~VL~IG~G~-G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~--~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
.+|+++|+|+ |+ ++..|.+ .+ ..|+.+.-.++-++..++. +.... ......+.. .. ......+.||+|
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~-~G-~~V~lv~r~~~~~~~i~~~~Gl~i~~---~g~~~~~~~-~~--~~~~~~~~~D~v 74 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLAR-AG-LPVRLILRDRQRLAAYQQAGGLTLVE---QGQASLYAI-PA--ETADAAEPIHRL 74 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHh-CC-CCeEEEEechHHHHHHhhcCCeEEee---CCcceeecc-CC--CCcccccccCEE
Confidence 4799999874 33 4555555 33 4799999887666655542 22111 011111110 00 001123579999
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~ 217 (257)
++-.- ...+.+.++. ++..+.++..++.
T Consensus 75 iv~vK---------~~~~~~al~~-l~~~l~~~t~vv~ 102 (305)
T PRK05708 75 LLACK---------AYDAEPAVAS-LAHRLAPGAELLL 102 (305)
T ss_pred EEECC---------HHhHHHHHHH-HHhhCCCCCEEEE
Confidence 88642 1225677888 7899999986653
No 380
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=88.05 E-value=1 Score=36.59 Aligned_cols=76 Identities=16% Similarity=0.181 Sum_probs=43.9
Q ss_pred HHHHHhhcCCCCCeEEEEeccchHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHH
Q 025107 92 LVHPALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAEL 169 (257)
Q Consensus 92 l~~~~l~~~~~~~~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l 169 (257)
|.++|+....+.++||++|+|.=+. ++.+++. + .+|++| +|+..+..++. +.+++.. +.|-
T Consensus 2 ~~~~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~-g-a~V~VI--sp~~~~~l~~l----------~~i~~~~---~~~~ 64 (157)
T PRK06719 2 YNMYPLMFNLHNKVVVIIGGGKIAYRKASGLKDT-G-AFVTVV--SPEICKEMKEL----------PYITWKQ---KTFS 64 (157)
T ss_pred CcccceEEEcCCCEEEEECCCHHHHHHHHHHHhC-C-CEEEEE--cCccCHHHHhc----------cCcEEEe---cccC
Confidence 3346777778899999999986554 3445553 3 588888 45544333321 1333322 2222
Q ss_pred hcCCCceeEEEEcCC
Q 025107 170 ESRKESYDVIIGDLA 184 (257)
Q Consensus 170 ~~~~~~fDvIi~D~~ 184 (257)
...-..+|+|+....
T Consensus 65 ~~dl~~a~lViaaT~ 79 (157)
T PRK06719 65 NDDIKDAHLIYAATN 79 (157)
T ss_pred hhcCCCceEEEECCC
Confidence 222366888887543
No 381
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.92 E-value=7 Score=35.17 Aligned_cols=128 Identities=13% Similarity=0.133 Sum_probs=67.8
Q ss_pred eEEEEeccchHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhh---hh-hccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025107 105 TIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSY---LV-VNKEAFSDPRLELVINDARAELESRKESYDV 178 (257)
Q Consensus 105 ~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~---~~-~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv 178 (257)
+|.+||+|.=+. +..+.+. + .+|+.++.+++.++..++. .. +.+.. ..++++.. .|..+.+ .+..|+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-g-~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~-~~~~i~~~-~~~~~~~---~~~~Dl 74 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-K-ISVNLWGRNHTTFESINTKRKNLKYLPTCH-LPDNISVK-SAIDEVL---SDNATC 74 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-C-CeEEEEecCHHHHHHHHHcCCCcccCCCCc-CCCCeEEe-CCHHHHH---hCCCCE
Confidence 589999886543 3344443 3 4799999999887766652 11 11110 11233332 3433332 246899
Q ss_pred EEEcCCCCCCCCcccCCchHHHHHHHHcC-cCCCCcEEEE-ecCCCCCCCChHHHHHHHHHHhhhCCceEEEeecCcc
Q 025107 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKP-RLNPEGIFVT-QAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSSYS 254 (257)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~-~L~pgGil~~-~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~~~ 254 (257)
|++-.++ ....+.++. ++. .++++..++. +-|-. ... .....+.+++.+|.-.....+.++
T Consensus 75 iiiavks---------~~~~~~l~~-l~~~~l~~~~~vv~~~nGi~----~~~-~~~~~~~l~~~~~~~~~~~~~Gp~ 137 (326)
T PRK14620 75 IILAVPT---------QQLRTICQQ-LQDCHLKKNTPILICSKGIE----KSS-LKFPSEIVNEILPNNPIAILSGPS 137 (326)
T ss_pred EEEEeCH---------HHHHHHHHH-HHHhcCCCCCEEEEEEcCee----CCC-CccHHHHHHHHcCCCceEeecCCc
Confidence 9987643 224577787 676 8888874443 22211 100 111234455667654444444444
No 382
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=87.87 E-value=6.2 Score=36.70 Aligned_cols=102 Identities=20% Similarity=0.217 Sum_probs=58.6
Q ss_pred CCeEEEEe--ccchHHHHHHHhcC--CCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE----cchHHHHhc-C-
Q 025107 103 PKTIFIMG--GGEGSTAREILRHK--TVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI----NDARAELES-R- 172 (257)
Q Consensus 103 ~~~VL~IG--~G~G~~~~~l~~~~--~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~----~Da~~~l~~-~- 172 (257)
..+||++| ++-|..+.++++.. +..+|+++|.+++-++.+++.++.... .......++. .|..+.++. +
T Consensus 176 g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~-~~Ga~~~~i~~~~~~~~~~~v~~~t~ 254 (410)
T cd08238 176 GGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAA-SRGIELLYVNPATIDDLHATLMELTG 254 (410)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhcccccc-ccCceEEEECCCccccHHHHHHHHhC
Confidence 47899997 34566677777753 335899999999999999986432100 0000111111 234444433 2
Q ss_pred CCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 173 KESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 173 ~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
...+|+|+..... + ..+.. ..+.|+++|.+++.
T Consensus 255 g~g~D~vid~~g~-----~-------~~~~~-a~~~l~~~G~~v~~ 287 (410)
T cd08238 255 GQGFDDVFVFVPV-----P-------ELVEE-ADTLLAPDGCLNFF 287 (410)
T ss_pred CCCCCEEEEcCCC-----H-------HHHHH-HHHHhccCCeEEEE
Confidence 3469988865321 1 23444 45678888865543
No 383
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=87.79 E-value=4.8 Score=36.36 Aligned_cols=92 Identities=15% Similarity=0.161 Sum_probs=53.7
Q ss_pred CCCCeEEEEeccchH-HHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025107 101 PNPKTIFIMGGGEGS-TAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~-~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv 178 (257)
.+.++||++|+|+=+ ++..++++ .+..+|+++|.+++=.+.+++ +.. + ....+ ... ...+|+
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~------~----~~~~~---~~~--~~g~d~ 225 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE------T----YLIDD---IPE--DLAVDH 225 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc------e----eehhh---hhh--ccCCcE
Confidence 346899999975433 33455553 344689999999988888775 211 0 01111 111 124898
Q ss_pred EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
|+ |.... + .+...+.. ..+.|+++|.+++-
T Consensus 226 vi-D~~G~----~----~~~~~~~~-~~~~l~~~G~iv~~ 255 (341)
T cd08237 226 AF-ECVGG----R----GSQSAINQ-IIDYIRPQGTIGLM 255 (341)
T ss_pred EE-ECCCC----C----ccHHHHHH-HHHhCcCCcEEEEE
Confidence 87 44321 1 01234555 56789999998764
No 384
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=87.77 E-value=1.4 Score=35.57 Aligned_cols=105 Identities=18% Similarity=0.237 Sum_probs=55.2
Q ss_pred cCCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc---CCCc
Q 025107 99 HHPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES---RKES 175 (257)
Q Consensus 99 ~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~---~~~~ 175 (257)
...-+..||++|.|.|-+=.++....+..+|.+.|-. ++ .|-.- .-|.-.++.+|+++-+.. ...+
T Consensus 25 v~~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~---l~---~hp~~-----~P~~~~~ilGdi~~tl~~~~~~g~~ 93 (160)
T PF12692_consen 25 VAGLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRA---LA---CHPSS-----TPPEEDLILGDIRETLPALARFGAG 93 (160)
T ss_dssp TTT--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--------S-GGG--------GGGEEES-HHHHHHHHHHH-S-
T ss_pred hcCCCCceEEeccCCCccHHHHHHhCCCCeEEEEeee---cc---cCCCC-----CCchHheeeccHHHHhHHHHhcCCc
Confidence 3444578999999999998888877667899999863 11 11110 113447899999998865 2234
Q ss_pred eeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025107 176 YDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (257)
Q Consensus 176 fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~ 217 (257)
--++=.|.-.+. +.....+..++.-.+..+|.|||+++-
T Consensus 94 a~laHaD~G~g~---~~~d~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 94 AALAHADIGTGD---KEKDDATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp EEEEEE----S----HHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred eEEEEeecCCCC---cchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 445555543322 222233334444446899999999874
No 385
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=87.72 E-value=6.5 Score=30.76 Aligned_cols=85 Identities=14% Similarity=0.232 Sum_probs=49.4
Q ss_pred CCCCeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEc-chHHHHhcCCCcee
Q 025107 101 PNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN-DARAELESRKESYD 177 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~-Da~~~l~~~~~~fD 177 (257)
.+.++||+||+|+-+ .+..++.. +..+|+.+.-+.+-.+...+.++ ...++++.- |..+.+ .++|
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt~~ra~~l~~~~~-------~~~~~~~~~~~~~~~~----~~~D 77 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRTPERAEALAEEFG-------GVNIEAIPLEDLEEAL----QEAD 77 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESSHHHHHHHHHHHT-------GCSEEEEEGGGHCHHH----HTES
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHcC-------ccccceeeHHHHHHHH----hhCC
Confidence 467899999997543 23444444 67789999998765444333331 234555433 322232 5699
Q ss_pred EEEEcCCCCCCCCcccCCchHHHHHH
Q 025107 178 VIIGDLADPIEGGPCYKLYTKSFYEF 203 (257)
Q Consensus 178 vIi~D~~~~~~~~p~~~L~t~ef~~~ 203 (257)
+||...+.+. ...+.+.+..
T Consensus 78 ivI~aT~~~~------~~i~~~~~~~ 97 (135)
T PF01488_consen 78 IVINATPSGM------PIITEEMLKK 97 (135)
T ss_dssp EEEE-SSTTS------TSSTHHHHTT
T ss_pred eEEEecCCCC------cccCHHHHHH
Confidence 9998876432 2445555444
No 386
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=87.57 E-value=2.9 Score=37.80 Aligned_cols=44 Identities=25% Similarity=0.428 Sum_probs=33.4
Q ss_pred CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh
Q 025107 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSY 145 (257)
Q Consensus 101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~ 145 (257)
.+..+||++|+|. |..+.++++..+. +|++++.+++-.+.+++.
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~~ 209 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGF 209 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHh
Confidence 3467999999855 4456667776664 799999999988888763
No 387
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=87.38 E-value=5 Score=35.84 Aligned_cols=96 Identities=16% Similarity=0.205 Sum_probs=54.7
Q ss_pred CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CCCceeE
Q 025107 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYDV 178 (257)
Q Consensus 102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~~~fDv 178 (257)
+..+||+.|+|. |..+.++++..+...+.+++.+++-.+.+++. .. +.-+.....+..+.++. ..+.+|+
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~-g~------~~vi~~~~~~~~~~i~~~~~~~~~d~ 239 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA-GA------TDIINPKNGDIVEQILELTGGRGVDC 239 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh-CC------cEEEcCCcchHHHHHHHHcCCCCCcE
Confidence 457888866542 44556666765544788888888877777753 11 11111122233333432 2356998
Q ss_pred EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025107 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (257)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~ 217 (257)
|+.... . .+.++. +.+.|+++|.++.
T Consensus 240 vld~~g-----~-------~~~~~~-~~~~l~~~G~~v~ 265 (347)
T cd05278 240 VIEAVG-----F-------EETFEQ-AVKVVRPGGTIAN 265 (347)
T ss_pred EEEccC-----C-------HHHHHH-HHHHhhcCCEEEE
Confidence 874321 1 133455 5678899998874
No 388
>PRK08618 ornithine cyclodeaminase; Validated
Probab=87.37 E-value=17 Score=32.91 Aligned_cols=115 Identities=19% Similarity=0.296 Sum_probs=64.8
Q ss_pred CcEEEEEecCCeeEE-EEcCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEEeccchHH--HHHHHhcCCCcEEEEEEC
Q 025107 58 QDIALLDTKPFGKAL-VIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDI 134 (257)
Q Consensus 58 ~~i~v~~~~~~g~~L-~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEi 134 (257)
+.+.+++.+. |+.+ .+||...+.-+..- ...+. .-.+..++++++++||+|.=+- +..++...+..+|.+++.
T Consensus 85 g~i~l~d~~t-G~p~a~~d~~~lT~~RTaa--~sala-~~~la~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r 160 (325)
T PRK08618 85 GTVILSDFET-GEVLAILDGTYLTQIRTGA--LSGVA-TKYLAREDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSR 160 (325)
T ss_pred EEEEEEeCCC-CceEEEEccchhhhhhHHH--HHHHH-HHHhcCCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECC
Confidence 4566776654 4433 56777655433211 01111 2233456789999999985542 233334456789999999
Q ss_pred CHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC
Q 025107 135 DEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD 185 (257)
Q Consensus 135 d~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~ 185 (257)
+++-.+...+.+... + ..++. ...|..+.+ ...|+|++-.+.
T Consensus 161 ~~~~a~~~~~~~~~~---~-~~~~~-~~~~~~~~~----~~aDiVi~aT~s 202 (325)
T PRK08618 161 TFEKAYAFAQEIQSK---F-NTEIY-VVNSADEAI----EEADIIVTVTNA 202 (325)
T ss_pred CHHHHHHHHHHHHHh---c-CCcEE-EeCCHHHHH----hcCCEEEEccCC
Confidence 987765544443211 0 11222 246665555 357999987653
No 389
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=87.34 E-value=2.1 Score=42.17 Aligned_cols=105 Identities=18% Similarity=0.194 Sum_probs=62.5
Q ss_pred CCCCCeEEEEeccchHHHHHHHhcCCC-cEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcc-----hH----HHH
Q 025107 100 HPNPKTIFIMGGGEGSTAREILRHKTV-EKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND-----AR----AEL 169 (257)
Q Consensus 100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~-~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~D-----a~----~~l 169 (257)
..+.+.||+|||..|+....+.+..++ .-|++|||-|.- +. |++.-+++| ++ .++
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik--------p~-------~~c~t~v~dIttd~cr~~l~k~l 106 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK--------PI-------PNCDTLVEDITTDECRSKLRKIL 106 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc--------cC-------CccchhhhhhhHHHHHHHHHHHH
Confidence 345678999999999999988886444 457899996532 11 222222222 22 233
Q ss_pred hcCCCceeEEEEcCCCCCCCC-c----ccCCchHHHHHHHHcCcCCCCcEEEEecCCC
Q 025107 170 ESRKESYDVIIGDLADPIEGG-P----CYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (257)
Q Consensus 170 ~~~~~~fDvIi~D~~~~~~~~-p----~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~ 222 (257)
... +-|+|++|........ . ....++...++. +-..|.-||.+++....+
T Consensus 107 ~t~--~advVLhDgapnVg~~w~~DA~~q~~L~l~al~L-A~~~l~~~g~fvtkvfrs 161 (780)
T KOG1098|consen 107 KTW--KADVVLHDGAPNVGGNWVQDAFQQACLTLRALKL-ATEFLAKGGTFVTKVFRS 161 (780)
T ss_pred HhC--CCcEEeecCCCccchhHHHHHHHhhHHHHHHHHH-HHHHHHhcCccccccccC
Confidence 322 3499999986322100 0 012223445555 567899999998876443
No 390
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=87.20 E-value=12 Score=33.97 Aligned_cols=77 Identities=19% Similarity=0.344 Sum_probs=43.3
Q ss_pred CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc-cCCCCCCCeEEEE-cchHHHHhcCCCceeE
Q 025107 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN-KEAFSDPRLELVI-NDARAELESRKESYDV 178 (257)
Q Consensus 102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~-~~~~~~~rv~i~~-~Da~~~l~~~~~~fDv 178 (257)
+.++|.+||+|. |.....++...+...+..+|++++..+ ++. +.+. .........++.. +|. +-+ ..-|+
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~-~~~-ld~~~~~~~~~~~~~I~~~~d~-~~l----~~aDi 77 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQ-GKA-LDISHSNVIAGSNSKVIGTNNY-EDI----AGSDV 77 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhh-HHH-HHHHhhhhccCCCeEEEECCCH-HHh----CCCCE
Confidence 346899999987 444444444445457999999998642 111 1110 0011223445664 663 222 45699
Q ss_pred EEEcCCC
Q 025107 179 IIGDLAD 185 (257)
Q Consensus 179 Ii~D~~~ 185 (257)
|+.....
T Consensus 78 VI~tag~ 84 (321)
T PTZ00082 78 VIVTAGL 84 (321)
T ss_pred EEECCCC
Confidence 9986643
No 391
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=86.58 E-value=1.5 Score=39.45 Aligned_cols=73 Identities=14% Similarity=0.220 Sum_probs=49.1
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-----CCCc
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-----RKES 175 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-----~~~~ 175 (257)
....+|..||.|+..+...+.+.| .+|++|||||.-+.+-+-.+.... .-|+ ++|...|+.. ...-
T Consensus 62 g~ghrivtigSGGcn~L~ylsr~P--a~id~VDlN~ahiAln~lklaA~R---~Lp~----h~dl~r~~a~a~t~~n~~~ 132 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSRAP--ARIDVVDLNPAHIALNRLKLAAFR---HLPS----HEDLVRFFALAGTRRNSQA 132 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhcCC--ceeEEEeCCHHHHHHHHHHHHHHh---hccc----chhhHHHhhhhcccccchh
Confidence 456789999999877888887754 599999999999988776554221 1122 2366666643 2245
Q ss_pred eeEEEEc
Q 025107 176 YDVIIGD 182 (257)
Q Consensus 176 fDvIi~D 182 (257)
||+-+..
T Consensus 133 yD~flae 139 (414)
T COG5379 133 YDRFLAE 139 (414)
T ss_pred hhccccc
Confidence 7766543
No 392
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=86.53 E-value=0.65 Score=40.47 Aligned_cols=45 Identities=31% Similarity=0.387 Sum_probs=34.7
Q ss_pred CCeEEEEeccchHHHHHHHhcC--------CCcEEEEEECCHHHHHHHHhhhh
Q 025107 103 PKTIFIMGGGEGSTAREILRHK--------TVEKVVMCDIDEEVVEFCKSYLV 147 (257)
Q Consensus 103 ~~~VL~IG~G~G~~~~~l~~~~--------~~~~v~~VEid~~vi~~a~~~~~ 147 (257)
+-+|+++|+|.|.++.-+++.- ...+++.||++|...+.-++.+.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~ 71 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS 71 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence 4799999999999998887731 12589999999999988888764
No 393
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=86.52 E-value=5.5 Score=35.85 Aligned_cols=100 Identities=17% Similarity=0.111 Sum_probs=56.7
Q ss_pred CCCCeEEEEeccchH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-CCceeE
Q 025107 101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDV 178 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-~~~fDv 178 (257)
.+.++||+.|+|+=+ .+.++++..+...|++++.+++-.+.+++. ... .-+.....+..+..+.. ...+|.
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-Ga~------~~i~~~~~~~~~~~~~~~~~~~d~ 231 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL-GAM------QTFNSREMSAPQIQSVLRELRFDQ 231 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CCc------eEecCcccCHHHHHHHhcCCCCCe
Confidence 346799999864322 345566666655688999999888888653 211 00111112222222222 246886
Q ss_pred EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
+++|... . ...+.. ..+.|+++|.+++-.
T Consensus 232 ~v~d~~G----~-------~~~~~~-~~~~l~~~G~iv~~G 260 (347)
T PRK10309 232 LILETAG----V-------PQTVEL-AIEIAGPRAQLALVG 260 (347)
T ss_pred EEEECCC----C-------HHHHHH-HHHHhhcCCEEEEEc
Confidence 6667542 1 123455 457889999988643
No 394
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=86.50 E-value=2.4 Score=39.58 Aligned_cols=73 Identities=21% Similarity=0.333 Sum_probs=45.4
Q ss_pred CeEEEEeccc-hHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--HhcCCCceeEE
Q 025107 104 KTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRKESYDVI 179 (257)
Q Consensus 104 ~~VL~IG~G~-G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~--l~~~~~~fDvI 179 (257)
++||+||||. |.. +..++++ +..+|++.|.+++-.+.+.... .++++.+.-|+.+. +...-..+|+|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-~d~~V~iAdRs~~~~~~i~~~~--------~~~v~~~~vD~~d~~al~~li~~~d~V 72 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-GDGEVTIADRSKEKCARIAELI--------GGKVEALQVDAADVDALVALIKDFDLV 72 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHhhc--------cccceeEEecccChHHHHHHHhcCCEE
Confidence 5899999953 222 2333443 4479999999987777666542 24666666666443 22222456999
Q ss_pred EEcCCC
Q 025107 180 IGDLAD 185 (257)
Q Consensus 180 i~D~~~ 185 (257)
|.-++.
T Consensus 73 In~~p~ 78 (389)
T COG1748 73 INAAPP 78 (389)
T ss_pred EEeCCc
Confidence 987763
No 395
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=86.43 E-value=21 Score=33.37 Aligned_cols=106 Identities=17% Similarity=0.248 Sum_probs=56.8
Q ss_pred eEEEEecc-chHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhh-hccCCCC----CCCeEEEEc-chHHHHhcCCCcee
Q 025107 105 TIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLV-VNKEAFS----DPRLELVIN-DARAELESRKESYD 177 (257)
Q Consensus 105 ~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~-~~~~~~~----~~rv~i~~~-Da~~~l~~~~~~fD 177 (257)
+|-+||+| -|.....++.. + -+|+++|+|++.++..++... .....+. ..+.++... |..+.+ ..-|
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G-~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~----~~ad 75 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-N-HEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAY----RDAD 75 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-C-CcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhh----cCCC
Confidence 58889998 34333333333 4 479999999999998887432 1110000 012222221 111111 4579
Q ss_pred EEEEcCCCCCCCCcccCCc----hHHHHHHHHcCcCCCCcEEEEecC
Q 025107 178 VIIGDLADPIEGGPCYKLY----TKSFYEFVVKPRLNPEGIFVTQAG 220 (257)
Q Consensus 178 vIi~D~~~~~~~~p~~~L~----t~ef~~~~~~~~L~pgGil~~~~~ 220 (257)
+|+...+.+.... ...+ -.+..+. +.+ +++|.+++..+.
T Consensus 76 ~vii~Vpt~~~~k--~~~~dl~~v~~v~~~-i~~-~~~g~lVV~~ST 118 (388)
T PRK15057 76 YVIIATPTDYDPK--TNYFNTSSVESVIKD-VVE-INPYAVMVIKST 118 (388)
T ss_pred EEEEeCCCCCccC--CCCcChHHHHHHHHH-HHh-cCCCCEEEEeee
Confidence 9999888653211 1122 2344566 455 677777766653
No 396
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=86.28 E-value=6.1 Score=34.92 Aligned_cols=96 Identities=20% Similarity=0.254 Sum_probs=58.6
Q ss_pred CCCCeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCcee
Q 025107 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYD 177 (257)
Q Consensus 101 ~~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fD 177 (257)
.+..+||+.|+ |.|..+.++++..+ .+|+++..+++-.+.++++ ... .-+.....|..+.++. ....+|
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G-~~vi~~~~s~~~~~~l~~~-Ga~------~vi~~~~~~~~~~v~~~~~~gvd 213 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKG-CKVIGCAGSDDKVAWLKEL-GFD------AVFNYKTVSLEEALKEAAPDGID 213 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-CCC------EEEeCCCccHHHHHHHHCCCCcE
Confidence 34678999984 55667777888766 4799999888888888773 211 1111112343333432 235699
Q ss_pred EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
+|+ |... + +.++. ..+.|+++|.++.-
T Consensus 214 ~vl-d~~g----~--------~~~~~-~~~~l~~~G~iv~~ 240 (329)
T cd08294 214 CYF-DNVG----G--------EFSST-VLSHMNDFGRVAVC 240 (329)
T ss_pred EEE-ECCC----H--------HHHHH-HHHhhccCCEEEEE
Confidence 887 4321 1 22345 56789999988753
No 397
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=86.22 E-value=6.3 Score=35.35 Aligned_cols=98 Identities=23% Similarity=0.276 Sum_probs=56.0
Q ss_pred CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcc----hHHHHhcC-CC
Q 025107 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIND----ARAELESR-KE 174 (257)
Q Consensus 101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~D----a~~~l~~~-~~ 174 (257)
.+..+||+.|+|+ |..+.++++..+...|+++.-+++-.+.+++. ... .-+.....+ ..+..+.. .+
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~~------~vi~~~~~~~~~~~~~~~~~~~~~ 233 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL-GAT------HTVNVRTEDTPESAEKIAELLGGK 233 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CCc------EEeccccccchhHHHHHHHHhCCC
Confidence 4567899977654 45666777776654588898888877777653 211 111111112 12222222 35
Q ss_pred ceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 175 ~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
.+|+|+-.... ...+.. ..+.|+++|.++.-
T Consensus 234 ~~d~vld~~g~------------~~~~~~-~~~~l~~~G~~v~~ 264 (343)
T cd05285 234 GPDVVIECTGA------------ESCIQT-AIYATRPGGTVVLV 264 (343)
T ss_pred CCCEEEECCCC------------HHHHHH-HHHHhhcCCEEEEE
Confidence 69998854321 113445 46688999988753
No 398
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=86.20 E-value=4.9 Score=37.69 Aligned_cols=72 Identities=24% Similarity=0.256 Sum_probs=47.8
Q ss_pred CCCeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHhc-CCCce
Q 025107 102 NPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELES-RKESY 176 (257)
Q Consensus 102 ~~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~--~l~~-~~~~f 176 (257)
..++++++|+|.=+ +++.+.+ .+ .+|+++|.|++.++..++.+ +.+.++.+|+.+ .++. .-+++
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~-~~-~~v~vid~~~~~~~~~~~~~---------~~~~~i~gd~~~~~~L~~~~~~~a 298 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEK-EG-YSVKLIERDPERAEELAEEL---------PNTLVLHGDGTDQELLEEEGIDEA 298 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh-CC-CeEEEEECCHHHHHHHHHHC---------CCCeEEECCCCCHHHHHhcCCccC
Confidence 46889999996543 2333333 23 48999999999888776532 245678888843 3433 33679
Q ss_pred eEEEEcCC
Q 025107 177 DVIIGDLA 184 (257)
Q Consensus 177 DvIi~D~~ 184 (257)
|.|++-..
T Consensus 299 ~~vi~~~~ 306 (453)
T PRK09496 299 DAFIALTN 306 (453)
T ss_pred CEEEECCC
Confidence 99887654
No 399
>PLN02740 Alcohol dehydrogenase-like
Probab=86.13 E-value=5.2 Score=36.75 Aligned_cols=98 Identities=14% Similarity=0.080 Sum_probs=55.4
Q ss_pred CCCCeEEEEeccchH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE--cchHHHHhc-CCCce
Q 025107 101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI--NDARAELES-RKESY 176 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~--~Da~~~l~~-~~~~f 176 (257)
...++||++|+|.=+ .+.++++..+..+|++++.+++-.+.+++. .. +.-+.... .|..+.++. ..+.+
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~-Ga------~~~i~~~~~~~~~~~~v~~~~~~g~ 269 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM-GI------TDFINPKDSDKPVHERIREMTGGGV 269 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc-CC------cEEEecccccchHHHHHHHHhCCCC
Confidence 346799999864322 345566666655799999999999998763 21 11111111 123333332 22369
Q ss_pred eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCC-cEEEEe
Q 025107 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQ 218 (257)
Q Consensus 177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pg-Gil~~~ 218 (257)
|+|+--.. .+ +.++. ..+.++++ |.+++-
T Consensus 270 dvvid~~G-----~~-------~~~~~-a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 270 DYSFECAG-----NV-------EVLRE-AFLSTHDGWGLTVLL 299 (381)
T ss_pred CEEEECCC-----Ch-------HHHHH-HHHhhhcCCCEEEEE
Confidence 98874322 11 23344 45567886 887653
No 400
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=86.13 E-value=7.1 Score=35.10 Aligned_cols=89 Identities=11% Similarity=0.054 Sum_probs=53.4
Q ss_pred CCCCeEEEEecc-chHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-cchHHHHhcCCCceeE
Q 025107 101 PNPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDV 178 (257)
Q Consensus 101 ~~~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~-~Da~~~l~~~~~~fDv 178 (257)
.+..+||+.|+| .|..+.++++..+ .+|++++.+++-.+.+++. ... .++. .+ ...+.+|+
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~G-~~vi~~~~~~~~~~~a~~~-Ga~---------~vi~~~~------~~~~~~d~ 226 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQG-ATVHVMTRGAAARRLALAL-GAA---------SAGGAYD------TPPEPLDA 226 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHh-CCc---------eeccccc------cCcccceE
Confidence 346799999964 3335566677666 4799999999888888874 111 0110 01 11235787
Q ss_pred EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
++..... + +.+.. ..+.|+++|.+++-.
T Consensus 227 ~i~~~~~-----~-------~~~~~-~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 227 AILFAPA-----G-------GLVPP-ALEALDRGGVLAVAG 254 (329)
T ss_pred EEECCCc-----H-------HHHHH-HHHhhCCCcEEEEEe
Confidence 6543211 1 23455 467899999987643
No 401
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=86.11 E-value=6.6 Score=35.18 Aligned_cols=86 Identities=14% Similarity=0.261 Sum_probs=49.3
Q ss_pred CCCeEEEEeccchHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEE-EcchHHHHhcCCCceeEE
Q 025107 102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELV-INDARAELESRKESYDVI 179 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~-~~Da~~~l~~~~~~fDvI 179 (257)
.+++|++||.|.-+. +...++..+ .+|++++.++...+.++.. . .+.+ ..+..+.+ ..+|+|
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~G-a~V~v~~r~~~~~~~~~~~-G----------~~~~~~~~l~~~l----~~aDiV 214 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALG-ANVTVGARKSAHLARITEM-G----------LSPFHLSELAEEV----GKIDII 214 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHc-C----------CeeecHHHHHHHh----CCCCEE
Confidence 578999999976443 223333344 5999999998766655542 1 1111 12323333 468999
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEE
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~ 216 (257)
|.-.+. .+.+.+. .+.++|+++++
T Consensus 215 I~t~p~--------~~i~~~~-----l~~~~~g~vII 238 (296)
T PRK08306 215 FNTIPA--------LVLTKEV-----LSKMPPEALII 238 (296)
T ss_pred EECCCh--------hhhhHHH-----HHcCCCCcEEE
Confidence 985431 2233333 34567777665
No 402
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=85.93 E-value=4.1 Score=37.82 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=24.9
Q ss_pred CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECC
Q 025107 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDID 135 (257)
Q Consensus 101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid 135 (257)
....+||++|+|+ |+.....+...++.+++.+|-|
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3567999999985 3333333334578899999988
No 403
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=85.75 E-value=3 Score=37.44 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=22.4
Q ss_pred eEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHH
Q 025107 105 TIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEE 137 (257)
Q Consensus 105 ~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~ 137 (257)
+||++|+|+ |+-....+...++.+++.+|-|-.
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~V 34 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTI 34 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEe
Confidence 589999973 333333333468899999998753
No 404
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=85.71 E-value=1.6 Score=40.28 Aligned_cols=48 Identities=25% Similarity=0.352 Sum_probs=38.9
Q ss_pred CCCCCeEEEEeccchHHHHHHHhc----C----CCcEEEEEECCHHHHHHHHhhhh
Q 025107 100 HPNPKTIFIMGGGEGSTAREILRH----K----TVEKVVMCDIDEEVVEFCKSYLV 147 (257)
Q Consensus 100 ~~~~~~VL~IG~G~G~~~~~l~~~----~----~~~~v~~VEid~~vi~~a~~~~~ 147 (257)
.|.+-++++||.|.|.+++-+++. . ...++..||++|+..+.=++.+.
T Consensus 75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~ 130 (370)
T COG1565 75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLK 130 (370)
T ss_pred CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHh
Confidence 466789999999999998877763 1 35799999999999888777654
No 405
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=85.69 E-value=6.6 Score=35.65 Aligned_cols=97 Identities=15% Similarity=0.187 Sum_probs=58.6
Q ss_pred CCCCeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEc-chHHHHhc-CCCce
Q 025107 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN-DARAELES-RKESY 176 (257)
Q Consensus 101 ~~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~-Da~~~l~~-~~~~f 176 (257)
.+..+||+.|+ |.|.++.++++..+ .+|++++.+++-.+.+++.+... .-+..... |..+.++. ..+.+
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G-~~Vi~~~~~~~k~~~~~~~lGa~------~vi~~~~~~~~~~~i~~~~~~gv 229 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHG-CYVVGSAGSSQKVDLLKNKLGFD------EAFNYKEEPDLDAALKRYFPEGI 229 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHhcCCC------EEEECCCcccHHHHHHHHCCCCc
Confidence 34678999997 45667778888766 47889998888877776433321 11111111 34344433 23469
Q ss_pred eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
|+|+ |... + ..+.. +.+.|+++|.+++-
T Consensus 230 D~v~-d~vG----~--------~~~~~-~~~~l~~~G~iv~~ 257 (348)
T PLN03154 230 DIYF-DNVG----G--------DMLDA-ALLNMKIHGRIAVC 257 (348)
T ss_pred EEEE-ECCC----H--------HHHHH-HHHHhccCCEEEEE
Confidence 9887 4321 1 12344 46789999998864
No 406
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=85.63 E-value=9 Score=34.22 Aligned_cols=82 Identities=15% Similarity=0.180 Sum_probs=41.8
Q ss_pred CCCCeEEEEeccchHHHH--HHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025107 101 PNPKTIFIMGGGEGSTAR--EILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~--~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv 178 (257)
.+.++||+||+|+-+-+. .+.. .+..+|+++..+++-.+.+++........ ....+.+..-+....+...-.++|+
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~-~g~~~i~i~nRt~~~~~ka~~la~~~~~~-~~~~~~~~~~~~~~~l~~~~~~aDi 199 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAI-EGLKEIKLFNRRDEFFDKALAFAQRVNEN-TDCVVTVTDLADQQAFAEALASADI 199 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHH-CCCCEEEEEeCCccHHHHHHHHHHHhhhc-cCceEEEechhhhhhhhhhcccCCE
Confidence 456899999997654332 2233 46679999999864333333322211100 0112333221111112222357999
Q ss_pred EEEcCC
Q 025107 179 IIGDLA 184 (257)
Q Consensus 179 Ii~D~~ 184 (257)
||...+
T Consensus 200 vINaTp 205 (288)
T PRK12749 200 LTNGTK 205 (288)
T ss_pred EEECCC
Confidence 987655
No 407
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=85.63 E-value=0.59 Score=42.78 Aligned_cols=115 Identities=18% Similarity=0.130 Sum_probs=74.3
Q ss_pred CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHH-------hhhhhccCCCCCCCeEEEEcchHHHHhcC
Q 025107 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCK-------SYLVVNKEAFSDPRLELVINDARAELESR 172 (257)
Q Consensus 100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~-------~~~~~~~~~~~~~rv~i~~~Da~~~l~~~ 172 (257)
..+++-|+|=-.|+|++...+++. + +-|.+-|||-.++...| .+|..-+ ..+--+.+..+|.-+-.-..
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~F-G-a~viGtDIDyr~vragrg~~~si~aNFkQYg--~~~~fldvl~~D~sn~~~rs 281 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHF-G-AYVIGTDIDYRTVRAGRGEDESIKANFKQYG--SSSQFLDVLTADFSNPPLRS 281 (421)
T ss_pred cCCCCEEecCccccCceeeehhhh-c-ceeeccccchheeecccCCCcchhHhHHHhC--CcchhhheeeecccCcchhh
Confidence 456678999999999998887775 4 58999999999998543 3343221 12234567777765433333
Q ss_pred CCceeEEEEcCCCCCCC----------------------CcccCCchH-----HHHHHHHcCcCCCCcEEEEec
Q 025107 173 KESYDVIIGDLADPIEG----------------------GPCYKLYTK-----SFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 173 ~~~fDvIi~D~~~~~~~----------------------~p~~~L~t~-----ef~~~~~~~~L~pgGil~~~~ 219 (257)
...||.|++|++-+... .|....|+. +.+.- ..++|..||.++.+.
T Consensus 282 n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~f-ss~~L~~ggrlv~w~ 354 (421)
T KOG2671|consen 282 NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCF-SSRRLVDGGRLVFWL 354 (421)
T ss_pred cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHh-hHhhhhcCceEEEec
Confidence 67899999999832210 111122221 23333 368999999999875
No 408
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=85.57 E-value=4.7 Score=36.60 Aligned_cols=96 Identities=20% Similarity=0.276 Sum_probs=58.8
Q ss_pred CCCeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CC-Ccee
Q 025107 102 NPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RK-ESYD 177 (257)
Q Consensus 102 ~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~-~~fD 177 (257)
..++||+.|+ |-|.++.++++..+. .+.++--+++-.+.+++.-. +.-+.....|..+-+++ +. +.+|
T Consensus 142 ~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGA-------d~vi~y~~~~~~~~v~~~t~g~gvD 213 (326)
T COG0604 142 PGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGA-------DHVINYREEDFVEQVRELTGGKGVD 213 (326)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCC-------CEEEcCCcccHHHHHHHHcCCCCce
Confidence 3689999995 445578888887665 44455455544446665432 22334445555566654 23 4699
Q ss_pred EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
+|+--.. .+.+.. ..+.|+++|.++.-.
T Consensus 214 vv~D~vG-------------~~~~~~-~l~~l~~~G~lv~ig 241 (326)
T COG0604 214 VVLDTVG-------------GDTFAA-SLAALAPGGRLVSIG 241 (326)
T ss_pred EEEECCC-------------HHHHHH-HHHHhccCCEEEEEe
Confidence 9984321 233444 467899999988754
No 409
>PLN02827 Alcohol dehydrogenase-like
Probab=85.47 E-value=7 Score=35.97 Aligned_cols=99 Identities=14% Similarity=0.159 Sum_probs=56.4
Q ss_pred CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE--cchHHHHhc-CCCce
Q 025107 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI--NDARAELES-RKESY 176 (257)
Q Consensus 101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~--~Da~~~l~~-~~~~f 176 (257)
.+..+||+.|+|+ |..+.++++..+...|++++.+++-.+.+++. ... .-+.... .|..+.++. ....+
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l-Ga~------~~i~~~~~~~~~~~~v~~~~~~g~ 264 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF-GVT------DFINPNDLSEPIQQVIKRMTGGGA 264 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CCc------EEEcccccchHHHHHHHHHhCCCC
Confidence 3468999998643 22345566666665789999999888888764 211 0011111 233344432 22369
Q ss_pred eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCC-cEEEEec
Q 025107 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPE-GIFVTQA 219 (257)
Q Consensus 177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pg-Gil~~~~ 219 (257)
|+|+--.. .+ ..+.. ..+.|+++ |.+++-.
T Consensus 265 d~vid~~G-----~~-------~~~~~-~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 265 DYSFECVG-----DT-------GIATT-ALQSCSDGWGLTVTLG 295 (378)
T ss_pred CEEEECCC-----Ch-------HHHHH-HHHhhccCCCEEEEEC
Confidence 98874321 11 22344 45678898 9987643
No 410
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=85.36 E-value=4.4 Score=30.14 Aligned_cols=91 Identities=19% Similarity=0.335 Sum_probs=48.3
Q ss_pred CCCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025107 100 HPNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 100 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
..+.++||++|+|.-+..+.-.-....++|+++..+. +..+ .+++++..+..+. -..+|+|
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~~~~------------~~i~~~~~~~~~~----l~~~~lV 64 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---EFSE------------GLIQLIRREFEED----LDGADLV 64 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---HHHH------------TSCEEEESS-GGG----CTTESEE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---hhhh------------hHHHHHhhhHHHH----HhhheEE
Confidence 4577899999998766654333233347999988776 2222 2455554443222 2569999
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCC
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~ 222 (257)
+....++ -.....++. .+.-|+++-....|
T Consensus 65 ~~at~d~--------~~n~~i~~~-----a~~~~i~vn~~D~p 94 (103)
T PF13241_consen 65 FAATDDP--------ELNEAIYAD-----ARARGILVNVVDDP 94 (103)
T ss_dssp EE-SS-H--------HHHHHHHHH-----HHHTTSEEEETT-C
T ss_pred EecCCCH--------HHHHHHHHH-----HhhCCEEEEECCCc
Confidence 9765432 123444444 33457777554444
No 411
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=85.22 E-value=7.5 Score=34.76 Aligned_cols=72 Identities=19% Similarity=0.267 Sum_probs=43.3
Q ss_pred cCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEEeccchHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhhhh
Q 025107 75 DGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLV 147 (257)
Q Consensus 75 dG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~ 147 (257)
||.+...+-|-..+.+.+.....-.....++||++|.|+-+- +..+++ .+..+|+++.-+++-.+...+.|+
T Consensus 98 ~g~l~G~NTD~~G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~-~g~~~i~V~NRt~~ra~~La~~~~ 171 (283)
T COG0169 98 DGKLRGYNTDGIGFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAE-AGAKRITVVNRTRERAEELADLFG 171 (283)
T ss_pred CCEEEEEcCCHHHHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhh
Confidence 366666555644455555432211122468999999986653 344444 356799999997776655555444
No 412
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.17 E-value=26 Score=31.51 Aligned_cols=106 Identities=18% Similarity=0.294 Sum_probs=55.2
Q ss_pred eEEEEeccc-hHHH-HHHHhcCCCcEEEEEECCHHHHH-HHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025107 105 TIFIMGGGE-GSTA-REILRHKTVEKVVMCDIDEEVVE-FCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (257)
Q Consensus 105 ~VL~IG~G~-G~~~-~~l~~~~~~~~v~~VEid~~vi~-~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~ 181 (257)
+|.+||+|. |... ..++......++..+|++++..+ .+....... .+. +...+..+|-.. + ...|+|++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~--~~~-~~~~i~~~d~~~-l----~~aDiVii 73 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGT--PFV-KPVRIYAGDYAD-C----KGADVVVI 73 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccc--ccc-CCeEEeeCCHHH-h----CCCCEEEE
Confidence 689999986 3333 33333332358999999987665 233221111 112 234555555322 2 46799999
Q ss_pred cCCCCCCCCccc-CCc--hHHHHHHH---HcCcCCCCcEEEEec
Q 025107 182 DLADPIEGGPCY-KLY--TKSFYEFV---VKPRLNPEGIFVTQA 219 (257)
Q Consensus 182 D~~~~~~~~p~~-~L~--t~ef~~~~---~~~~L~pgGil~~~~ 219 (257)
.+..+...+... .|. +.+.++.+ ++ ...|+|++++-.
T Consensus 74 ta~~~~~~~~~r~dl~~~n~~i~~~~~~~l~-~~~~~giiiv~t 116 (308)
T cd05292 74 TAGANQKPGETRLDLLKRNVAIFKEIIPQIL-KYAPDAILLVVT 116 (308)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHCCCeEEEEec
Confidence 887554211110 111 22333331 23 366889887654
No 413
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=84.68 E-value=9.2 Score=33.96 Aligned_cols=96 Identities=20% Similarity=0.256 Sum_probs=57.8
Q ss_pred CCCCeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-cchHHHHhc-CCCce
Q 025107 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELES-RKESY 176 (257)
Q Consensus 101 ~~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~-~Da~~~l~~-~~~~f 176 (257)
.+..+||+.|+ |.|..+.++++..+. +|+++..+++-.+.++++ +.. .-+.... .+..+.++. ..+.+
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~l-Ga~------~vi~~~~~~~~~~~~~~~~~~gv 208 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKKL-GFD------VAFNYKTVKSLEETLKKASPDGY 208 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc-CCC------EEEeccccccHHHHHHHhCCCCe
Confidence 34679999984 566677788887664 788888888888888653 211 0011111 123333333 23469
Q ss_pred eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
|+|+ |... + +.+.. ..+.|+++|.++.-
T Consensus 209 dvv~-d~~G----~--------~~~~~-~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 209 DCYF-DNVG----G--------EFSNT-VIGQMKKFGRIAIC 236 (325)
T ss_pred EEEE-ECCC----H--------HHHHH-HHHHhCcCcEEEEe
Confidence 9988 4321 1 12344 46689999998854
No 414
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.39 E-value=31 Score=31.11 Aligned_cols=110 Identities=16% Similarity=0.246 Sum_probs=56.6
Q ss_pred eEEEEeccc-hHHH-HHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCC-CCeEEEEcchHHHHhcCCCceeEEEE
Q 025107 105 TIFIMGGGE-GSTA-REILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSD-PRLELVINDARAELESRKESYDVIIG 181 (257)
Q Consensus 105 ~VL~IG~G~-G~~~-~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~-~rv~i~~~Da~~~l~~~~~~fDvIi~ 181 (257)
+|-+||+|. |+.. ..++...-..++..+|++++..+--..-+... ..+.. .++++..+|..+ + ..-|+|++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~-~~~~~~~~~~i~~~~y~~-~----~~aDivvi 74 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHA-TALTYSTNTKIRAGDYDD-C----ADADIIVI 74 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhh-hccCCCCCEEEEECCHHH-h----CCCCEEEE
Confidence 578999976 5554 33444333358999999876543322211111 11222 357777777322 2 45799999
Q ss_pred cCCCCCCCCcc---cCCc--hHHHHHHHHc--CcCCCCcEEEEecC
Q 025107 182 DLADPIEGGPC---YKLY--TKSFYEFVVK--PRLNPEGIFVTQAG 220 (257)
Q Consensus 182 D~~~~~~~~p~---~~L~--t~ef~~~~~~--~~L~pgGil~~~~~ 220 (257)
.+-.+...+.. ..|+ +.+.++.++. ..-.|+|++++-.+
T Consensus 75 taG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsN 120 (307)
T cd05290 75 TAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITN 120 (307)
T ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 77544321211 1222 2234444211 22347898876443
No 415
>PRK07340 ornithine cyclodeaminase; Validated
Probab=84.30 E-value=20 Score=32.17 Aligned_cols=112 Identities=15% Similarity=0.165 Sum_probs=61.6
Q ss_pred cEEEEEecCCeeEE-EEcCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEEeccchHHH--HHHHhcCCCcEEEEEECC
Q 025107 59 DIALLDTKPFGKAL-VIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTA--REILRHKTVEKVVMCDID 135 (257)
Q Consensus 59 ~i~v~~~~~~g~~L-~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~--~~l~~~~~~~~v~~VEid 135 (257)
.+.+++.+. |+.+ .+||...+.-+..- ...+. .-++..++++++++||+|.=+-. ..+....+..+|.+++.+
T Consensus 84 ~i~l~d~~t-G~p~a~~d~~~lT~~RTaA--~sala-~~~La~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~ 159 (304)
T PRK07340 84 EVVVADAAT-GERLFLLDGPTVTGRRTAA--VSLLA-ARTLAPAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT 159 (304)
T ss_pred EEEEEECCC-CcEEEEEcChhHHHHHHHH--HHHHH-HHHhCCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence 455555554 4433 56766554322110 01111 12233467899999999765532 233233456789999999
Q ss_pred HHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC
Q 025107 136 EEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD 185 (257)
Q Consensus 136 ~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~ 185 (257)
++-.+...+.+... .+.+...|..+.+ ...|+|+.-.+.
T Consensus 160 ~~~a~~~a~~~~~~-------~~~~~~~~~~~av----~~aDiVitaT~s 198 (304)
T PRK07340 160 AASAAAFCAHARAL-------GPTAEPLDGEAIP----EAVDLVVTATTS 198 (304)
T ss_pred HHHHHHHHHHHHhc-------CCeeEECCHHHHh----hcCCEEEEccCC
Confidence 87766554444311 1233345655555 478999987654
No 416
>PRK08328 hypothetical protein; Provisional
Probab=84.20 E-value=1.4 Score=37.95 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=25.2
Q ss_pred CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCH
Q 025107 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDE 136 (257)
Q Consensus 102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~ 136 (257)
..++||++|||+ |+.....+...++.+++.+|-|.
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 467899999985 55444444446789999998663
No 417
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=84.01 E-value=12 Score=35.34 Aligned_cols=69 Identities=25% Similarity=0.440 Sum_probs=41.1
Q ss_pred eEEEEeccchHHHHHHHh----c---CCCcEEEEEECCHHHHHH----HHhhhhhccCCCCCCCeEE-EEcchHHHHhcC
Q 025107 105 TIFIMGGGEGSTAREILR----H---KTVEKVVMCDIDEEVVEF----CKSYLVVNKEAFSDPRLEL-VINDARAELESR 172 (257)
Q Consensus 105 ~VL~IG~G~G~~~~~l~~----~---~~~~~v~~VEid~~vi~~----a~~~~~~~~~~~~~~rv~i-~~~Da~~~l~~~ 172 (257)
+|.+||+|+. .+..+.+ . -+..+|..+|||++-++. +++.+...+ +.+++ ...|-++-++
T Consensus 2 KI~iIGgGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g-----~~~~v~~ttD~~~Al~-- 73 (425)
T cd05197 2 KIAIIGGGSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVG-----ADIKFEKTMDLEDAII-- 73 (425)
T ss_pred EEEEECCchH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhC-----CCeEEEEeCCHHHHhC--
Confidence 6889999996 5554443 2 235799999999976665 444444321 23333 3355555553
Q ss_pred CCceeEEEEcC
Q 025107 173 KESYDVIIGDL 183 (257)
Q Consensus 173 ~~~fDvIi~D~ 183 (257)
..|.|+...
T Consensus 74 --gADfVi~~i 82 (425)
T cd05197 74 --DADFVINQF 82 (425)
T ss_pred --CCCEEEEee
Confidence 246665543
No 418
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=83.90 E-value=4.9 Score=39.92 Aligned_cols=70 Identities=24% Similarity=0.356 Sum_probs=48.9
Q ss_pred CCeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--HhcCC-Ccee
Q 025107 103 PKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRK-ESYD 177 (257)
Q Consensus 103 ~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~--l~~~~-~~fD 177 (257)
..+|+++|+|.=+ +++.+.+ .+ .+++++|.|++.++.++++ ..+++.+|+.+. +++.+ ++.|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~-~g-~~vvvID~d~~~v~~~~~~-----------g~~v~~GDat~~~~L~~agi~~A~ 466 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLS-SG-VKMTVLDHDPDHIETLRKF-----------GMKVFYGDATRMDLLESAGAAKAE 466 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHh-CC-CCEEEEECCHHHHHHHHhc-----------CCeEEEEeCCCHHHHHhcCCCcCC
Confidence 3689999997654 2334443 33 4799999999999988762 346888998553 44433 6889
Q ss_pred EEEEcCCC
Q 025107 178 VIIGDLAD 185 (257)
Q Consensus 178 vIi~D~~~ 185 (257)
++++...+
T Consensus 467 ~vvv~~~d 474 (621)
T PRK03562 467 VLINAIDD 474 (621)
T ss_pred EEEEEeCC
Confidence 88877654
No 419
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=83.84 E-value=9.2 Score=36.88 Aligned_cols=110 Identities=12% Similarity=0.228 Sum_probs=66.7
Q ss_pred CeEEEEeccchHHHHHHHhc----CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH-HHhcCCCceeE
Q 025107 104 KTIFIMGGGEGSTAREILRH----KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA-ELESRKESYDV 178 (257)
Q Consensus 104 ~~VL~IG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~-~l~~~~~~fDv 178 (257)
..|.+.-||+|++..+..+. ....++++-|+++.+...++.+.-+... ..+...+..+|-.. +-.....+||+
T Consensus 219 ~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~--~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 219 DDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI--DYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC--CccccCcccCCcCCCccccccccCCE
Confidence 58999999999988765432 1224689999999999999988654321 11223333344322 10012356999
Q ss_pred EEEcCCCC--CCCC--cc---------------cCCchHHHHHHHHcCcCCCCcEEE
Q 025107 179 IIGDLADP--IEGG--PC---------------YKLYTKSFYEFVVKPRLNPEGIFV 216 (257)
Q Consensus 179 Ii~D~~~~--~~~~--p~---------------~~L~t~ef~~~~~~~~L~pgGil~ 216 (257)
|+.+++.. |..+ |+ ..-...-|+.. +...|++||...
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h-~~~~L~~gG~~a 352 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLH-ALYVLGQEGTAA 352 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHH-HHHhcCCCCeEE
Confidence 99998632 2110 10 00113467777 678999999644
No 420
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=83.81 E-value=31 Score=32.09 Aligned_cols=120 Identities=12% Similarity=0.121 Sum_probs=73.0
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHH-HHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVV-EFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi-~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
..|.|+++|.|.-+=........-.++|.+.|+||--. +.+-+ ..++...+ .....-|+++
T Consensus 208 aGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~Md------------Gf~V~~m~------~Aa~~gDifi 269 (420)
T COG0499 208 AGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMD------------GFRVMTME------EAAKTGDIFV 269 (420)
T ss_pred cCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhc------------CcEEEEhH------HhhhcCCEEE
Confidence 57899999988765433333222347999999999543 22222 22333211 1113347777
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCceEEEeecC
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKCGCCALFSS 252 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~~ 252 (257)
...-. ....+.|-++. + | +|.++.|.++-+..-+...+++.....+++-|+|.-|.++.
T Consensus 270 T~TGn-------kdVi~~eh~~~-M----k-DgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr~~V~ey~l~~ 328 (420)
T COG0499 270 TATGN-------KDVIRKEHFEK-M----K-DGAILANAGHFDVEIDVAGLEELAVEKREVRPQVDEYELPD 328 (420)
T ss_pred EccCC-------cCccCHHHHHh-c----c-CCeEEecccccceeccHHHHHHhhhhHhccccCceEEEcCC
Confidence 65321 23445665554 3 3 67777798876544456677777778888999999988763
No 421
>PRK06223 malate dehydrogenase; Reviewed
Probab=83.72 E-value=17 Score=32.35 Aligned_cols=108 Identities=25% Similarity=0.289 Sum_probs=54.7
Q ss_pred CeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHH-hhhhhccCCCCCCCeEEEE-cchHHHHhcCCCceeEEE
Q 025107 104 KTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCK-SYLVVNKEAFSDPRLELVI-NDARAELESRKESYDVII 180 (257)
Q Consensus 104 ~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~-~~~~~~~~~~~~~rv~i~~-~Da~~~l~~~~~~fDvIi 180 (257)
++|-+||+|. |......+...+..+|..+|++++..+... +...... ......++.. +|. +-+ ..-|+|+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~--~~~~~~~i~~~~d~-~~~----~~aDiVi 75 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAP--VEGFDTKITGTNDY-EDI----AGSDVVV 75 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhh--hcCCCcEEEeCCCH-HHH----CCCCEEE
Confidence 5899999988 665544444333228999999988653221 1111100 1111234442 443 222 3569999
Q ss_pred EcCCCCCCCCcc-cCC--c----hHHHHHHHHcCcCCCCcEEEEecC
Q 025107 181 GDLADPIEGGPC-YKL--Y----TKSFYEFVVKPRLNPEGIFVTQAG 220 (257)
Q Consensus 181 ~D~~~~~~~~p~-~~L--~----t~ef~~~~~~~~L~pgGil~~~~~ 220 (257)
+....|...+.. ..+ . -+++.+. +.+. .|++++++..+
T Consensus 76 i~~~~p~~~~~~r~~~~~~n~~i~~~i~~~-i~~~-~~~~~viv~tN 120 (307)
T PRK06223 76 ITAGVPRKPGMSRDDLLGINAKIMKDVAEG-IKKY-APDAIVIVVTN 120 (307)
T ss_pred ECCCCCCCcCCCHHHHHHHHHHHHHHHHHH-HHHH-CCCeEEEEecC
Confidence 876544321110 011 1 1345555 4444 37787776543
No 422
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=83.71 E-value=15 Score=33.13 Aligned_cols=96 Identities=19% Similarity=0.220 Sum_probs=52.9
Q ss_pred CCCeEEEEeccchHH-HHHHHhcCCCcEEEEEECCHHHH-HHHHhhhhhccCCCCCCCeEEEE-cchHHHHhcCCCceeE
Q 025107 102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVV-EFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYDV 178 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi-~~a~~~~~~~~~~~~~~rv~i~~-~Da~~~l~~~~~~fDv 178 (257)
..++|++||+|.=+. ....++..+..+|++++.+++-. ++++++ +. ..+. .|..+.+ ..+|+
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~-g~----------~~~~~~~~~~~l----~~aDv 241 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL-GG----------NAVPLDELLELL----NEADV 241 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc-CC----------eEEeHHHHHHHH----hcCCE
Confidence 578999999864332 22222224557899999998644 555553 11 1111 2333333 35799
Q ss_pred EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCC
Q 025107 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (257)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~ 222 (257)
||.-...+. | .+.+.. +.+....++.+++...-|
T Consensus 242 Vi~at~~~~---~------~~~~~~-~~~~~~~~~~~viDlavP 275 (311)
T cd05213 242 VISATGAPH---Y------AKIVER-AMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred EEECCCCCc---h------HHHHHH-HHhhCCCCCeEEEEeCCC
Confidence 998765432 1 333343 222233367888876544
No 423
>PRK07904 short chain dehydrogenase; Provisional
Probab=83.68 E-value=9 Score=32.94 Aligned_cols=79 Identities=19% Similarity=0.325 Sum_probs=45.6
Q ss_pred CCCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHH-HHHHHhhhhhccCCCCCCCeEEEEcchHH------HHh
Q 025107 101 PNPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEV-VEFCKSYLVVNKEAFSDPRLELVINDARA------ELE 170 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~v-i~~a~~~~~~~~~~~~~~rv~i~~~Da~~------~l~ 170 (257)
.++++||+.|+++|. ++++++++. ..+|+++..+++- .+...+.+... ...+++++..|..+ .++
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~g-g~~V~~~~r~~~~~~~~~~~~l~~~----~~~~v~~~~~D~~~~~~~~~~~~ 80 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKNA-PARVVLAALPDDPRRDAAVAQMKAA----GASSVEVIDFDALDTDSHPKVID 80 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhcC-CCeEEEEeCCcchhHHHHHHHHHhc----CCCceEEEEecCCChHHHHHHHH
Confidence 567889999996554 334444442 2589898887764 44333333221 12367777776532 122
Q ss_pred c--CCCceeEEEEcCC
Q 025107 171 S--RKESYDVIIGDLA 184 (257)
Q Consensus 171 ~--~~~~fDvIi~D~~ 184 (257)
. ..++.|+++..+.
T Consensus 81 ~~~~~g~id~li~~ag 96 (253)
T PRK07904 81 AAFAGGDVDVAIVAFG 96 (253)
T ss_pred HHHhcCCCCEEEEeee
Confidence 1 1257999887653
No 424
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=83.65 E-value=1.1 Score=39.97 Aligned_cols=99 Identities=17% Similarity=0.112 Sum_probs=66.8
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
+...-+|++|||.|-.... . +...+.+.|+....+..+++- ....+...|+.+.. .....||.++
T Consensus 44 ~~gsv~~d~gCGngky~~~---~-p~~~~ig~D~c~~l~~~ak~~----------~~~~~~~ad~l~~p-~~~~s~d~~l 108 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLGV---N-PLCLIIGCDLCTGLLGGAKRS----------GGDNVCRADALKLP-FREESFDAAL 108 (293)
T ss_pred CCcceeeecccCCcccCcC---C-CcceeeecchhhhhccccccC----------CCceeehhhhhcCC-CCCCccccch
Confidence 4467899999999865432 2 346789999988888887752 11156677876643 3457899988
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
+-+.-++. +...-....+++ +.++|+|||-..+.
T Consensus 109 siavihhl---sT~~RR~~~l~e-~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 109 SIAVIHHL---STRERRERALEE-LLRVLRPGGNALVY 142 (293)
T ss_pred hhhhhhhh---hhHHHHHHHHHH-HHHHhcCCCceEEE
Confidence 77653221 112334578888 78999999976554
No 425
>PLN02256 arogenate dehydrogenase
Probab=83.65 E-value=33 Score=30.89 Aligned_cols=91 Identities=15% Similarity=0.140 Sum_probs=52.0
Q ss_pred CCCCeEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025107 101 PNPKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (257)
Q Consensus 101 ~~~~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv 178 (257)
.+..+|.+||+|. |.++..+.+. + .+|++++.++. .+.++++ .+.. ..|..+.+. ...|+
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~-G-~~V~~~d~~~~-~~~a~~~-----------gv~~-~~~~~e~~~---~~aDv 95 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQ-G-HTVLATSRSDY-SDIAAEL-----------GVSF-FRDPDDFCE---EHPDV 95 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhC-C-CEEEEEECccH-HHHHHHc-----------CCee-eCCHHHHhh---CCCCE
Confidence 4567899999873 4455555543 3 47999999863 2333321 1111 334444332 34799
Q ss_pred EEEcCCCCCCCCcccCCchHHHHHHHH-cCcCCCCcEEEEecC
Q 025107 179 IIGDLADPIEGGPCYKLYTKSFYEFVV-KPRLNPEGIFVTQAG 220 (257)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~-~~~L~pgGil~~~~~ 220 (257)
|++..+.. ...++++. + ...++|+.+ ++..+
T Consensus 96 Vilavp~~---------~~~~vl~~-l~~~~l~~~~i-viDv~ 127 (304)
T PLN02256 96 VLLCTSIL---------STEAVLRS-LPLQRLKRSTL-FVDVL 127 (304)
T ss_pred EEEecCHH---------HHHHHHHh-hhhhccCCCCE-EEecC
Confidence 99875421 23566666 5 456777764 45543
No 426
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=83.63 E-value=20 Score=32.18 Aligned_cols=107 Identities=19% Similarity=0.244 Sum_probs=53.0
Q ss_pred CeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHh--hhhhccCCCCCCCeEEE-EcchHHHHhcCCCceeEE
Q 025107 104 KTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKS--YLVVNKEAFSDPRLELV-INDARAELESRKESYDVI 179 (257)
Q Consensus 104 ~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~--~~~~~~~~~~~~rv~i~-~~Da~~~l~~~~~~fDvI 179 (257)
.+|-+||+|. |.....++...+..+|+.+|++++..+ ++. ..... .......++. .+|..+ + ..-|+|
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~-g~a~d~~~~~--~~~~~~~~i~~t~d~~~-~----~~aDiV 73 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQ-GKALDMYEAS--PVGGFDTKVTGTNNYAD-T----ANSDIV 73 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhH-HHHHhhhhhh--hccCCCcEEEecCCHHH-h----CCCCEE
Confidence 4789999986 444333333323237999999877433 222 21110 0111122343 255433 3 346999
Q ss_pred EEcCCCCCCCCcc-cCC--chH----HHHHHHHcCcCCCCcEEEEecC
Q 025107 180 IGDLADPIEGGPC-YKL--YTK----SFYEFVVKPRLNPEGIFVTQAG 220 (257)
Q Consensus 180 i~D~~~~~~~~p~-~~L--~t~----ef~~~~~~~~L~pgGil~~~~~ 220 (257)
++.+..|...+.. ..| .+. ++.+. +.+. .|++++++-.+
T Consensus 74 Iitag~p~~~~~sR~~l~~~N~~iv~~i~~~-I~~~-~p~~~iIv~tN 119 (305)
T TIGR01763 74 VITAGLPRKPGMSREDLLSMNAGIVREVTGR-IMEH-SPNPIIVVVSN 119 (305)
T ss_pred EEcCCCCCCcCCCHHHHHHHHHHHHHHHHHH-HHHH-CCCeEEEEecC
Confidence 9987654321110 011 122 33344 3444 58888776443
No 427
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=83.58 E-value=10 Score=36.08 Aligned_cols=39 Identities=31% Similarity=0.461 Sum_probs=27.6
Q ss_pred eEEEEeccchHHHHHHHh----c---CCCcEEEEEECCHHHHHHHHh
Q 025107 105 TIFIMGGGEGSTAREILR----H---KTVEKVVMCDIDEEVVEFCKS 144 (257)
Q Consensus 105 ~VL~IG~G~G~~~~~l~~----~---~~~~~v~~VEid~~vi~~a~~ 144 (257)
+|.+||+|+. .+..+.+ . -+..+|+.+|||++-++...+
T Consensus 2 KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~ 47 (437)
T cd05298 2 KIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAE 47 (437)
T ss_pred eEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHH
Confidence 6899999996 5544443 2 235799999999977766443
No 428
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=83.42 E-value=17 Score=29.77 Aligned_cols=109 Identities=15% Similarity=0.137 Sum_probs=61.6
Q ss_pred CCCCeEEEEeccchH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025107 101 PNPKTIFIMGGGEGS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
...++|.+||+|.=+ .....++-.+ .+|.+++..+......... .+ ...+..+.++ +.|+|
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~fG-~~V~~~d~~~~~~~~~~~~-----------~~--~~~~l~ell~----~aDiv 95 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAFG-MRVIGYDRSPKPEEGADEF-----------GV--EYVSLDELLA----QADIV 95 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHT-----------TE--EESSHHHHHH----H-SEE
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecCC-ceeEEecccCChhhhcccc-----------cc--eeeehhhhcc----hhhhh
Confidence 357899999996433 2222233344 5999999998876622221 11 2234555554 57999
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhh
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQ 240 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (257)
++-.+... . ..++++.++|+. ||+|.++ +|.+-.. .-+ -.++++.|++
T Consensus 96 ~~~~plt~--~-T~~li~~~~l~~-----mk~ga~l-vN~aRG~-~vd---e~aL~~aL~~ 143 (178)
T PF02826_consen 96 SLHLPLTP--E-TRGLINAEFLAK-----MKPGAVL-VNVARGE-LVD---EDALLDALES 143 (178)
T ss_dssp EE-SSSST--T-TTTSBSHHHHHT-----STTTEEE-EESSSGG-GB----HHHHHHHHHT
T ss_pred hhhhcccc--c-cceeeeeeeeec-----cccceEE-Eeccchh-hhh---hhHHHHHHhh
Confidence 99887421 1 247888888775 6666655 5764221 122 2355666654
No 429
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=83.40 E-value=14 Score=33.07 Aligned_cols=98 Identities=16% Similarity=0.129 Sum_probs=51.4
Q ss_pred CCCeEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh-hhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025107 102 NPKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSY-LVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (257)
Q Consensus 102 ~~~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~-~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv 178 (257)
...+|++||+|. +.++..+.+. + .+|+.+.-++. +..++. +.... .+.+..+..-.+..... ..+.+|+
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~-g-~~V~~~~r~~~--~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~-~~~~~D~ 75 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARA-G-FDVHFLLRSDY--EAVRENGLQVDS---VHGDFHLPPVQAYRSAE-DMPPCDW 75 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHC-C-CeEEEEEeCCH--HHHHhCCeEEEe---CCCCeeecCceEEcchh-hcCCCCE
Confidence 346899999885 3344555543 3 47888887762 333322 11110 01111111000000111 1257999
Q ss_pred EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025107 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (257)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~ 217 (257)
|++-.... .+.+.++. ++..+++++.++.
T Consensus 76 vilavK~~---------~~~~~~~~-l~~~~~~~~~iv~ 104 (313)
T PRK06249 76 VLVGLKTT---------ANALLAPL-IPQVAAPDAKVLL 104 (313)
T ss_pred EEEEecCC---------ChHhHHHH-HhhhcCCCCEEEE
Confidence 99875421 13566777 6888999997664
No 430
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=83.35 E-value=9.1 Score=30.05 Aligned_cols=74 Identities=16% Similarity=0.149 Sum_probs=42.4
Q ss_pred CCCCeEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025107 101 PNPKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (257)
Q Consensus 101 ~~~~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv 178 (257)
.++++|+++|+|. ..+++.+.+. +..+|++++.+++-.+...+.+... .+.....|..+. -+..|+
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~-g~~~v~v~~r~~~~~~~~~~~~~~~-------~~~~~~~~~~~~----~~~~Dv 84 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAEL-GAAKIVIVNRTLEKAKALAERFGEL-------GIAIAYLDLEEL----LAEADL 84 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHhhc-------ccceeecchhhc----cccCCE
Confidence 4578999999863 1233444443 2468999999987765544433210 011122332222 367899
Q ss_pred EEEcCCCC
Q 025107 179 IIGDLADP 186 (257)
Q Consensus 179 Ii~D~~~~ 186 (257)
|++..+.+
T Consensus 85 vi~~~~~~ 92 (155)
T cd01065 85 IINTTPVG 92 (155)
T ss_pred EEeCcCCC
Confidence 99987753
No 431
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=83.27 E-value=6.7 Score=30.75 Aligned_cols=95 Identities=21% Similarity=0.344 Sum_probs=52.5
Q ss_pred EEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhh-hhhccCCCCCCCeE--EEEcchHHHHhcCCCceeEEE
Q 025107 106 IFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSY-LVVNKEAFSDPRLE--LVINDARAELESRKESYDVII 180 (257)
Q Consensus 106 VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~-~~~~~~~~~~~rv~--i~~~Da~~~l~~~~~~fDvIi 180 (257)
|+++|+|.=+ ++..|.+ .+ .+|+.+.-.+ -.+..++. +...... .+..+. ....+. ....+.||+||
T Consensus 1 I~I~G~GaiG~~~a~~L~~-~g-~~V~l~~r~~-~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~D~vi 72 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ-AG-HDVTLVSRSP-RLEAIKEQGLTITGPD-GDETVQPPIVISAP----SADAGPYDLVI 72 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH-TT-CEEEEEESHH-HHHHHHHHCEEEEETT-EEEEEEEEEEESSH----GHHHSTESEEE
T ss_pred CEEECcCHHHHHHHHHHHH-CC-CceEEEEccc-cHHhhhheeEEEEecc-cceecccccccCcc----hhccCCCcEEE
Confidence 6788887533 2334444 33 5899999988 54544332 2222110 011111 111111 12247899999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
+-.- .....+.++. +++.++|+..+++-
T Consensus 73 v~vK---------a~~~~~~l~~-l~~~~~~~t~iv~~ 100 (151)
T PF02558_consen 73 VAVK---------AYQLEQALQS-LKPYLDPNTTIVSL 100 (151)
T ss_dssp E-SS---------GGGHHHHHHH-HCTGEETTEEEEEE
T ss_pred EEec---------ccchHHHHHH-HhhccCCCcEEEEE
Confidence 8742 2335678888 79999999766653
No 432
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=83.21 E-value=19 Score=32.08 Aligned_cols=64 Identities=16% Similarity=0.244 Sum_probs=36.2
Q ss_pred cCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEEeccchHHH--HHHHhcCCCcEEEEEECCHHHHHH
Q 025107 75 DGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDEEVVEF 141 (257)
Q Consensus 75 dG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~--~~l~~~~~~~~v~~VEid~~vi~~ 141 (257)
||.+.-.+-|-.-+.+.+.. .....+.++||+||+|+-+-+ ..+++ .+..+|++++.+++-.+.
T Consensus 101 ~g~l~G~NTD~~Gf~~~L~~--~~~~~~~k~vlilGaGGaarAi~~aL~~-~g~~~i~i~nR~~~ka~~ 166 (283)
T PRK14027 101 TGHTTGHNTDVSGFGRGMEE--GLPNAKLDSVVQVGAGGVGNAVAYALVT-HGVQKLQVADLDTSRAQA 166 (283)
T ss_pred CCcEEEEcCCHHHHHHHHHh--cCcCcCCCeEEEECCcHHHHHHHHHHHH-CCCCEEEEEcCCHHHHHH
Confidence 55554444443333333421 111235689999999765533 33333 456789999988754443
No 433
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=83.20 E-value=6.3 Score=38.14 Aligned_cols=104 Identities=16% Similarity=0.246 Sum_probs=64.1
Q ss_pred CCCeEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhh-----cc-CCCC-------CCCeEEEEcchH
Q 025107 102 NPKTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVV-----NK-EAFS-------DPRLELVINDAR 166 (257)
Q Consensus 102 ~~~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~-----~~-~~~~-------~~rv~i~~~Da~ 166 (257)
+.++|-+||+|. ..++..+++. + -+|+.+|.+++.++.++++... .. +.+. ..|++.. .|..
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~a-G-~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~ 80 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASA-G-HQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV-TDLH 80 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe-CCHH
Confidence 446899999984 3455666654 3 4899999999999877654321 10 0000 0233332 2322
Q ss_pred HHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCC
Q 025107 167 AELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGP 221 (257)
Q Consensus 167 ~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~ 221 (257)
-+ ..-|+||...++.. -...++|+. +.+.++|+-+++.|+.+
T Consensus 81 -~l----~~aDlVIEav~E~~-------~vK~~vf~~-l~~~~~~~~IlasnTSt 122 (503)
T TIGR02279 81 -AL----ADAGLVIEAIVENL-------EVKKALFAQ-LEELCPADTIIASNTSS 122 (503)
T ss_pred -Hh----CCCCEEEEcCcCcH-------HHHHHHHHH-HHhhCCCCeEEEECCCC
Confidence 12 35799998877532 123566777 67888888888877654
No 434
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=82.96 E-value=7.8 Score=32.84 Aligned_cols=77 Identities=19% Similarity=0.307 Sum_probs=45.6
Q ss_pred CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchH-----------H
Q 025107 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR-----------A 167 (257)
Q Consensus 102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~-----------~ 167 (257)
+.++||+.|+.+|. +++++++. + .+|.+++.+++-.+...+.+... ...++.++..|.. +
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~-G-~~Vi~~~r~~~~~~~~~~~l~~~----~~~~~~~~~~d~~~~~~~~~~~~~~ 84 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARH-G-ATVILLGRTEEKLEAVYDEIEAA----GGPQPAIIPLDLLTATPQNYQQLAD 84 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC-C-CcEEEEeCCHHHHHHHHHHHHhc----CCCCceEEEecccCCCHHHHHHHHH
Confidence 56789999975443 23444443 3 48999999887655444433321 1235666665552 1
Q ss_pred HHhcCCCceeEEEEcCC
Q 025107 168 ELESRKESYDVIIGDLA 184 (257)
Q Consensus 168 ~l~~~~~~fDvIi~D~~ 184 (257)
.+....++.|.|+..+.
T Consensus 85 ~~~~~~~~id~vi~~Ag 101 (247)
T PRK08945 85 TIEEQFGRLDGVLHNAG 101 (247)
T ss_pred HHHHHhCCCCEEEECCc
Confidence 22223357899998875
No 435
>PRK06141 ornithine cyclodeaminase; Validated
Probab=82.88 E-value=36 Score=30.67 Aligned_cols=113 Identities=18% Similarity=0.251 Sum_probs=62.9
Q ss_pred CcEEEEEecCCeeEE-EEcCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEEeccchHHHH--HHHhcCCCcEEEEEEC
Q 025107 58 QDIALLDTKPFGKAL-VIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGSTAR--EILRHKTVEKVVMCDI 134 (257)
Q Consensus 58 ~~i~v~~~~~~g~~L-~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~~~--~l~~~~~~~~v~~VEi 134 (257)
+.+.+++.+. |+.+ .+||...+.-+..- ...+. .-.+..++.++|++||+|.=+... .++...+..+|+++..
T Consensus 83 g~v~l~d~~t-G~p~ai~d~~~lT~~RTaa--~sala-~~~La~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~R 158 (314)
T PRK06141 83 STYLLFDGRT-GEPLALVDGTELTARRTAA--ASALA-ASYLARKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGR 158 (314)
T ss_pred EEEEEEECCC-CCEEEEEcCcchhcchhHH--HHHHH-HHHhCCCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 3466666654 4443 67887765543221 01111 122345678999999997655433 2233345679999999
Q ss_pred CHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCC
Q 025107 135 DEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLA 184 (257)
Q Consensus 135 d~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~ 184 (257)
+++-.+...+.+... ..++.. ..+..+.+ ...|+|++-.+
T Consensus 159 s~~~a~~~a~~~~~~-----g~~~~~-~~~~~~av----~~aDIVi~aT~ 198 (314)
T PRK06141 159 DPAKAEALAAELRAQ-----GFDAEV-VTDLEAAV----RQADIISCATL 198 (314)
T ss_pred CHHHHHHHHHHHHhc-----CCceEE-eCCHHHHH----hcCCEEEEeeC
Confidence 987765544443311 112332 35555444 45899876544
No 436
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=82.76 E-value=5.5 Score=40.21 Aligned_cols=102 Identities=17% Similarity=0.231 Sum_probs=64.0
Q ss_pred CeEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc------cCCCC-------CCCeEEEEcchHHH
Q 025107 104 KTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFS-------DPRLELVINDARAE 168 (257)
Q Consensus 104 ~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~------~~~~~-------~~rv~i~~~Da~~~ 168 (257)
++|.+||+|. .+++..++...+ -.|+.+|.+++.++.++++.... ...+. -.++++. .|. +-
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~-~~ 386 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAG-LPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDY-RG 386 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CCh-HH
Confidence 7899999987 335555552334 58999999999998887654311 00000 0233333 221 11
Q ss_pred HhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025107 169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (257)
Q Consensus 169 l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~ 220 (257)
+ ..-|+||=..++.. -..+++|++ +.+.++|+.+++.|+.
T Consensus 387 ~----~~aDlViEav~E~~-------~~K~~v~~~-le~~~~~~~ilasnTS 426 (708)
T PRK11154 387 F----KHADVVIEAVFEDL-------ALKQQMVAE-VEQNCAPHTIFASNTS 426 (708)
T ss_pred h----ccCCEEeecccccH-------HHHHHHHHH-HHhhCCCCcEEEECCC
Confidence 1 45788886655321 124678888 7999999999998864
No 437
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=82.67 E-value=8 Score=34.11 Aligned_cols=87 Identities=24% Similarity=0.188 Sum_probs=52.6
Q ss_pred eEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025107 105 TIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (257)
Q Consensus 105 ~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D 182 (257)
+|.+||+|. |+++..+.+. + .+|+++|.+++..+.+++.-. +.....+. +.+ ...|+|++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~-g-~~V~~~d~~~~~~~~a~~~g~----------~~~~~~~~-~~~----~~aDlVila 64 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL-G-HTVYGVSRRESTCERAIERGL----------VDEASTDL-SLL----KDCDLVILA 64 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHCCC----------cccccCCH-hHh----cCCCEEEEc
Confidence 688999884 4566666654 3 489999999998877765310 11111121 212 457999988
Q ss_pred CCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
.+.. ...++++. +...++++-++ +..
T Consensus 65 vp~~---------~~~~~~~~-l~~~l~~~~ii-~d~ 90 (279)
T PRK07417 65 LPIG---------LLLPPSEQ-LIPALPPEAIV-TDV 90 (279)
T ss_pred CCHH---------HHHHHHHH-HHHhCCCCcEE-EeC
Confidence 6521 12456677 57777776544 444
No 438
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=82.63 E-value=22 Score=31.64 Aligned_cols=98 Identities=19% Similarity=0.221 Sum_probs=50.8
Q ss_pred cCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEEeccchHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCC
Q 025107 75 DGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEA 152 (257)
Q Consensus 75 dG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~ 152 (257)
||.+...+-|-.-+.+.+.. .....+.++||+||+|+-+- +..+.. .+..+|+.++.+++-.+...+.+...
T Consensus 101 ~g~l~G~NTD~~G~~~~l~~--~~~~~~~k~vlIlGaGGaaraia~aL~~-~G~~~I~I~nR~~~ka~~la~~l~~~--- 174 (284)
T PRK12549 101 DGRRIGHNTDWSGFAESFRR--GLPDASLERVVQLGAGGAGAAVAHALLT-LGVERLTIFDVDPARAAALADELNAR--- 174 (284)
T ss_pred CCEEEEEcCCHHHHHHHHHh--hccCccCCEEEEECCcHHHHHHHHHHHH-cCCCEEEEECCCHHHHHHHHHHHHhh---
Confidence 45444444443333333321 11224568999999986543 233333 45678999999976555444333211
Q ss_pred CCCCCeEEEE-cchHHHHhcCCCceeEEEEcCC
Q 025107 153 FSDPRLELVI-NDARAELESRKESYDVIIGDLA 184 (257)
Q Consensus 153 ~~~~rv~i~~-~Da~~~l~~~~~~fDvIi~D~~ 184 (257)
.+...+.. .+..+. -..+|+||.-.+
T Consensus 175 --~~~~~~~~~~~~~~~----~~~aDiVInaTp 201 (284)
T PRK12549 175 --FPAARATAGSDLAAA----LAAADGLVHATP 201 (284)
T ss_pred --CCCeEEEeccchHhh----hCCCCEEEECCc
Confidence 12233332 221111 245899888755
No 439
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=82.42 E-value=8.7 Score=37.97 Aligned_cols=93 Identities=18% Similarity=0.256 Sum_probs=58.9
Q ss_pred CeEEEEeccchHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHhcCC-CceeE
Q 025107 104 KTIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESRK-ESYDV 178 (257)
Q Consensus 104 ~~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~--~l~~~~-~~fDv 178 (257)
.+|+++|+|.=+. ++.+.++ + .+++++|.||+.++.++++ ...++.+|+.+ .+++.+ ++.|+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~-g-~~vvvID~d~~~v~~~~~~-----------g~~v~~GDat~~~~L~~agi~~A~~ 467 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN-K-MRITVLERDISAVNLMRKY-----------GYKVYYGDATQLELLRAAGAEKAEA 467 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC-C-CCEEEEECCHHHHHHHHhC-----------CCeEEEeeCCCHHHHHhcCCccCCE
Confidence 5799999876442 3344433 3 4799999999999988762 24678888855 344433 68898
Q ss_pred EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
++.-..++. . +...... .+.+.|+-.++...
T Consensus 468 vv~~~~d~~-----~---n~~i~~~--~r~~~p~~~IiaRa 498 (601)
T PRK03659 468 IVITCNEPE-----D---TMKIVEL--CQQHFPHLHILARA 498 (601)
T ss_pred EEEEeCCHH-----H---HHHHHHH--HHHHCCCCeEEEEe
Confidence 888765432 1 1222232 34567777666654
No 440
>PRK06046 alanine dehydrogenase; Validated
Probab=82.40 E-value=32 Score=31.15 Aligned_cols=113 Identities=16% Similarity=0.197 Sum_probs=63.7
Q ss_pred cEEEEEecCCeeEE-EEcCcccccCCCchhHHHHHHHHHhhcCCCCCeEEEEeccchH--HHHHHHhcCCCcEEEEEECC
Q 025107 59 DIALLDTKPFGKAL-VIDGKLQSAEVDEFIYHESLVHPALLHHPNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDID 135 (257)
Q Consensus 59 ~i~v~~~~~~g~~L-~ldG~~~~~~~~~~~y~e~l~~~~l~~~~~~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid 135 (257)
.|.+++... |+.+ .+||...+.-+... ...+. .-++..++++++.+||+|.=+ .++.+...++..+|.+++.+
T Consensus 88 ~i~L~d~~t-G~p~aild~~~lT~~RTaA--~sala-~~~La~~~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~ 163 (326)
T PRK06046 88 VIILNSPET-GFPLAIMDGTYLTDMRTGA--AGGVA-AKYLARKDSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRT 163 (326)
T ss_pred EEEEEeCCC-CceEEEEcCccHHHHHHHH--HHHHH-HHHhCCCCCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCC
Confidence 566666554 4433 56776654422210 01111 123445678999999998633 23344445677899999999
Q ss_pred HHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCC
Q 025107 136 EEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLAD 185 (257)
Q Consensus 136 ~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~ 185 (257)
++-.+...+.+... ...++. ...|..+.+ + .|+|++-.+.
T Consensus 164 ~~~~~~~~~~~~~~----~~~~v~-~~~~~~~~l----~-aDiVv~aTps 203 (326)
T PRK06046 164 KSSAEKFVERMSSV----VGCDVT-VAEDIEEAC----D-CDILVTTTPS 203 (326)
T ss_pred HHHHHHHHHHHHhh----cCceEE-EeCCHHHHh----h-CCEEEEecCC
Confidence 98777665544311 011232 245655554 2 6999886653
No 441
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=82.31 E-value=13 Score=33.25 Aligned_cols=97 Identities=20% Similarity=0.234 Sum_probs=58.6
Q ss_pred CCCCeEEEEec--cchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-cchHHHHhc-CCCce
Q 025107 101 PNPKTIFIMGG--GEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELES-RKESY 176 (257)
Q Consensus 101 ~~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~-~Da~~~l~~-~~~~f 176 (257)
.+..+||+.|+ |-|..+.++++..+. +|+++..+++-.+.+++.++.. .-+.... .|..+.++. ....+
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~lGa~------~vi~~~~~~~~~~~i~~~~~~gv 222 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNKLGFD------DAFNYKEEPDLDAALKRYFPNGI 222 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCc------eeEEcCCcccHHHHHHHhCCCCc
Confidence 35689999995 556677778887664 7888888888888887633321 1111111 133333332 23569
Q ss_pred eEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 177 DVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 177 DvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
|+|+ |... + ..+.. +.+.|+++|.++.-
T Consensus 223 d~v~-d~~g----~--------~~~~~-~~~~l~~~G~iv~~ 250 (338)
T cd08295 223 DIYF-DNVG----G--------KMLDA-VLLNMNLHGRIAAC 250 (338)
T ss_pred EEEE-ECCC----H--------HHHHH-HHHHhccCcEEEEe
Confidence 9887 4321 1 22344 46789999988853
No 442
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=82.19 E-value=18 Score=32.02 Aligned_cols=37 Identities=14% Similarity=0.200 Sum_probs=25.2
Q ss_pred CCCeEEEEeccchHHH--HHHHhcCCCcEEEEEECCHHHH
Q 025107 102 NPKTIFIMGGGEGSTA--REILRHKTVEKVVMCDIDEEVV 139 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~--~~l~~~~~~~~v~~VEid~~vi 139 (257)
+.++||+||+|+-+-+ ..++. .+..+|+++.-+++-.
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~-~G~~~i~I~nRt~~ka 162 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALAS-LGVTDITVINRNPDKL 162 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHH-cCCCeEEEEeCCHHHH
Confidence 5689999999755532 33333 4567899999886543
No 443
>PRK07102 short chain dehydrogenase; Provisional
Probab=82.19 E-value=6.8 Score=33.14 Aligned_cols=75 Identities=19% Similarity=0.161 Sum_probs=44.9
Q ss_pred CeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------HhcCCC
Q 025107 104 KTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LESRKE 174 (257)
Q Consensus 104 ~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l~~~~~ 174 (257)
++||+.|+.+|. +++.+++. + .+|++++.+++-.+...+..... ...+++++..|..+. +.....
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~-G-~~Vi~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 75 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAA-G-ARLYLAARDVERLERLADDLRAR----GAVAVSTHELDILDTASHAAFLDSLPA 75 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhc-C-CEEEEEeCCHHHHHHHHHHHHHh----cCCeEEEEecCCCChHHHHHHHHHHhh
Confidence 578999976443 33444443 3 48999999887554433332211 235778887776543 222334
Q ss_pred ceeEEEEcCC
Q 025107 175 SYDVIIGDLA 184 (257)
Q Consensus 175 ~fDvIi~D~~ 184 (257)
++|+++..+.
T Consensus 76 ~~d~vv~~ag 85 (243)
T PRK07102 76 LPDIVLIAVG 85 (243)
T ss_pred cCCEEEECCc
Confidence 6799998764
No 444
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=82.13 E-value=0.33 Score=41.44 Aligned_cols=93 Identities=19% Similarity=0.257 Sum_probs=60.1
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
..|+++||||+|+|-++..+..+. .+|.+-|++..|....++. +.++.- ..+|+. ++-+||+|.
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~kk-----------~ynVl~--~~ew~~-t~~k~dli~ 174 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKKK-----------NYNVLT--EIEWLQ-TDVKLDLIL 174 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhhc-----------CCceee--ehhhhh-cCceeehHH
Confidence 457899999999999999887753 5788999998888766542 122221 234543 356799986
Q ss_pred Ec-CCCCCCCCcccCCchHHHHHHHHcCcCCC-CcEEEE
Q 025107 181 GD-LADPIEGGPCYKLYTKSFYEFVVKPRLNP-EGIFVT 217 (257)
Q Consensus 181 ~D-~~~~~~~~p~~~L~t~ef~~~~~~~~L~p-gGil~~ 217 (257)
+= .-|-. ..| -..++. ++.+|+| +|.+++
T Consensus 175 clNlLDRc-~~p------~kLL~D-i~~vl~psngrviv 205 (288)
T KOG3987|consen 175 CLNLLDRC-FDP------FKLLED-IHLVLAPSNGRVIV 205 (288)
T ss_pred HHHHHHhh-cCh------HHHHHH-HHHHhccCCCcEEE
Confidence 52 22211 122 234566 6778888 786554
No 445
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=81.63 E-value=21 Score=31.80 Aligned_cols=96 Identities=19% Similarity=0.179 Sum_probs=55.5
Q ss_pred eEEEEeccch--HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc---cCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025107 105 TIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN---KEAFSDPRLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 105 ~VL~IG~G~G--~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~---~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
+|.+||+|.= .++..+++. + -+|++++.+++.++..++..... ......++++. ..|..+.+ +..|+|
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~D~v 75 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-G-HDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAEAL----ADADLI 75 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-C-CEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHHHH----hCCCEE
Confidence 6999999743 344555553 3 47999999998887766542110 00000112322 23433333 357999
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~ 217 (257)
++-.++. ...+.++. +...++++.+++.
T Consensus 76 i~~v~~~---------~~~~v~~~-l~~~~~~~~~vi~ 103 (325)
T PRK00094 76 LVAVPSQ---------ALREVLKQ-LKPLLPPDAPIVW 103 (325)
T ss_pred EEeCCHH---------HHHHHHHH-HHhhcCCCCEEEE
Confidence 9886531 24566777 6778888876653
No 446
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=81.56 E-value=4.3 Score=37.86 Aligned_cols=43 Identities=5% Similarity=0.079 Sum_probs=34.0
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSY 145 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~ 145 (257)
.+..+||.|..|+......+++.| ++|++||+||.-..+.+-.
T Consensus 34 ~~~d~vl~ItSaG~N~L~yL~~~P--~~I~aVDlNp~Q~aLleLK 76 (380)
T PF11899_consen 34 GPDDRVLTITSAGCNALDYLLAGP--KRIHAVDLNPAQNALLELK 76 (380)
T ss_pred CCCCeEEEEccCCchHHHHHhcCC--ceEEEEeCCHHHHHHHHHH
Confidence 355689999998777777777643 6999999999998876643
No 447
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=81.53 E-value=3.9 Score=34.52 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=25.5
Q ss_pred HhhcCCCCCeEEEEeccchHH--HHHHHhcCCCcEEEEEEC
Q 025107 96 ALLHHPNPKTIFIMGGGEGST--AREILRHKTVEKVVMCDI 134 (257)
Q Consensus 96 ~l~~~~~~~~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEi 134 (257)
|+....+.++||+||+|.=+. ++.+++. + .+|++|+.
T Consensus 3 Pl~l~l~~k~vLVIGgG~va~~ka~~Ll~~-g-a~V~VIs~ 41 (202)
T PRK06718 3 PLMIDLSNKRVVIVGGGKVAGRRAITLLKY-G-AHIVVISP 41 (202)
T ss_pred ceEEEcCCCEEEEECCCHHHHHHHHHHHHC-C-CeEEEEcC
Confidence 555567889999999986554 3445553 3 58988853
No 448
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=81.50 E-value=1.9 Score=42.86 Aligned_cols=34 Identities=21% Similarity=0.458 Sum_probs=25.7
Q ss_pred CCCeEEEEeccc-hHH-HHHHHhcCCCcEEEEEECCH
Q 025107 102 NPKTIFIMGGGE-GST-AREILRHKTVEKVVMCDIDE 136 (257)
Q Consensus 102 ~~~~VL~IG~G~-G~~-~~~l~~~~~~~~v~~VEid~ 136 (257)
+..+||++|+|+ |+. ++.|++ .++.+++.||-|.
T Consensus 337 ~~~kVLIvGaGGLGs~VA~~La~-~GVg~ItlVD~D~ 372 (664)
T TIGR01381 337 SQLKVLLLGAGTLGCNVARCLIG-WGVRHITFVDNGK 372 (664)
T ss_pred hcCeEEEECCcHHHHHHHHHHHH-cCCCeEEEEcCCE
Confidence 367999999997 654 455555 5789999999764
No 449
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=81.39 E-value=5.4 Score=41.89 Aligned_cols=52 Identities=21% Similarity=0.327 Sum_probs=30.3
Q ss_pred CchhHHHHHHHHHh--hcCCCCCeEEEEeccchH--HHHHHHhcCCCcEEEEEECCH
Q 025107 84 DEFIYHESLVHPAL--LHHPNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDE 136 (257)
Q Consensus 84 ~~~~y~e~l~~~~l--~~~~~~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~ 136 (257)
|+..|.+.+..... ...-...+||++|+|+=+ ++..+. ..++.+++.+|-+.
T Consensus 3 d~~lYsRQi~l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~-laGVg~iti~D~d~ 58 (1008)
T TIGR01408 3 DEALYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLV-LAGVKSVTLHDTEK 58 (1008)
T ss_pred hHhhhhhHHHhcCHHHHHHHhhCcEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCe
Confidence 34456655432221 112245799999996422 223333 36889999999775
No 450
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=81.24 E-value=2.3 Score=36.98 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=26.5
Q ss_pred CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHH
Q 025107 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEV 138 (257)
Q Consensus 102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~v 138 (257)
+..+||++|+|+ |+.....+...++.+++.+|-|..-
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve 60 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVS 60 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence 457899999874 5554444555688999999877543
No 451
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=81.06 E-value=8.9 Score=33.87 Aligned_cols=93 Identities=16% Similarity=0.231 Sum_probs=51.9
Q ss_pred eEEEEeccchHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhh-hhhccCCCCCCCeEE---EEcchHHHHhcCCCceeE
Q 025107 105 TIFIMGGGEGST--AREILRHKTVEKVVMCDIDEEVVEFCKSY-LVVNKEAFSDPRLEL---VINDARAELESRKESYDV 178 (257)
Q Consensus 105 ~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~a~~~-~~~~~~~~~~~rv~i---~~~Da~~~l~~~~~~fDv 178 (257)
+|++||+|.-+. +..+.+. + .+|+.++. ++.++..++. +.... ......+ ...|. ....+.+|+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-g-~~V~~~~r-~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~----~~~~~~~d~ 71 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-G-RDVTFLVR-PKRAKALRERGLVIRS---DHGDAVVPGPVITDP----EELTGPFDL 71 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-C-CceEEEec-HHHHHHHHhCCeEEEe---CCCeEEecceeecCH----HHccCCCCE
Confidence 699999987654 4444443 3 47999988 6666665543 21111 0111111 01121 111267999
Q ss_pred EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025107 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (257)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~ 217 (257)
|++-.... ...+.++. ++..++++.+++.
T Consensus 72 vilavk~~---------~~~~~~~~-l~~~~~~~~~ii~ 100 (305)
T PRK12921 72 VILAVKAY---------QLDAAIPD-LKPLVGEDTVIIP 100 (305)
T ss_pred EEEEeccc---------CHHHHHHH-HHhhcCCCCEEEE
Confidence 99876432 23566777 6778888876653
No 452
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=80.97 E-value=23 Score=31.55 Aligned_cols=34 Identities=21% Similarity=0.443 Sum_probs=22.5
Q ss_pred CCCCeEEEEeccchHHHHHHHh---cCCCcEEEEEECCH
Q 025107 101 PNPKTIFIMGGGEGSTAREILR---HKTVEKVVMCDIDE 136 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~---~~~~~~v~~VEid~ 136 (257)
.+.+++|++|+| |. ++.++. ..+..+|+++..++
T Consensus 124 ~~~k~vlI~GAG-Ga-grAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 124 VKGKKLTVIGAG-GA-ATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred cCCCEEEEECCc-HH-HHHHHHHHHHCCCCEEEEEeCCc
Confidence 356899999996 33 233222 23556799999985
No 453
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=80.85 E-value=10 Score=32.53 Aligned_cols=70 Identities=31% Similarity=0.401 Sum_probs=46.9
Q ss_pred CeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH--HHhcCC-CceeE
Q 025107 104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA--ELESRK-ESYDV 178 (257)
Q Consensus 104 ~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~--~l~~~~-~~fDv 178 (257)
++++++|+|.=+ +++.|.+. + ..|+++|.|++.++....- ..-...+++|+.+ .|++.+ ..+|+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~-g-~~Vv~Id~d~~~~~~~~~~---------~~~~~~v~gd~t~~~~L~~agi~~aD~ 69 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE-G-HNVVLIDRDEERVEEFLAD---------ELDTHVVIGDATDEDVLEEAGIDDADA 69 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC-C-CceEEEEcCHHHHHHHhhh---------hcceEEEEecCCCHHHHHhcCCCcCCE
Confidence 478999998533 45666654 2 4899999999997773321 1234667777743 455543 78999
Q ss_pred EEEcCC
Q 025107 179 IIGDLA 184 (257)
Q Consensus 179 Ii~D~~ 184 (257)
++....
T Consensus 70 vva~t~ 75 (225)
T COG0569 70 VVAATG 75 (225)
T ss_pred EEEeeC
Confidence 888765
No 454
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=80.77 E-value=2.7 Score=39.17 Aligned_cols=58 Identities=14% Similarity=0.215 Sum_probs=44.5
Q ss_pred CCeEEEEcchHHHHhcC-CCceeE-EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 156 PRLELVINDARAELESR-KESYDV-IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 156 ~rv~i~~~Da~~~l~~~-~~~fDv-Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
.++++++++..++++.. ++++|. |++|..| |. .+ .. -.+.++. +.+.++|||.++...
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~D-wm-~~--~~-~~~~~~~-l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMD-WM-DP--EQ-LNEEWQE-LARTARPGARVLWRS 334 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhh-hC-CH--HH-HHHHHHH-HHHHhCCCCEEEEee
Confidence 79999999999999865 688996 7778775 31 22 22 2456777 799999999999865
No 455
>PRK06194 hypothetical protein; Provisional
Probab=80.74 E-value=11 Score=32.64 Aligned_cols=77 Identities=17% Similarity=0.191 Sum_probs=46.2
Q ss_pred CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--H----h--
Q 025107 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--L----E-- 170 (257)
Q Consensus 102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~--l----~-- 170 (257)
+.++||+.|+++|. +++++++. + .+|++++.+++..+...+.+.. ...++.++..|..+. + .
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~d~~~~~~~~~~~ 77 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAAL-G-MKLVLADVQQDALDRAVAELRA-----QGAEVLGVRTDVSDAAQVEALADAA 77 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHC-C-CEEEEEeCChHHHHHHHHHHHh-----cCCeEEEEECCCCCHHHHHHHHHHH
Confidence 35789998876443 34444443 4 5899999987665544333221 124677788876432 1 1
Q ss_pred -cCCCceeEEEEcCCC
Q 025107 171 -SRKESYDVIIGDLAD 185 (257)
Q Consensus 171 -~~~~~fDvIi~D~~~ 185 (257)
...++.|+|+..+..
T Consensus 78 ~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 78 LERFGAVHLLFNNAGV 93 (287)
T ss_pred HHHcCCCCEEEECCCC
Confidence 122468999998753
No 456
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=80.61 E-value=23 Score=33.31 Aligned_cols=106 Identities=19% Similarity=0.157 Sum_probs=63.0
Q ss_pred CeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH----H-----HhcC--
Q 025107 104 KTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA----E-----LESR-- 172 (257)
Q Consensus 104 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~----~-----l~~~-- 172 (257)
.+|-++|+|==+++..+.-.....+|+++|||+..++..++-- ..+..-|... - ++.+
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~-----------~~i~e~~~~~~v~~~v~~g~lraTtd 78 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGE-----------SYIEEPDLDEVVKEAVESGKLRATTD 78 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCc-----------ceeecCcHHHHHHHHHhcCCceEecC
Confidence 6788999986665544433222358999999999998876521 1111111111 1 1111
Q ss_pred C---CceeEEEEcCCCCCCC--CcccCCchHHHHHHHHcCcCCCCcEEEEecCCC
Q 025107 173 K---ESYDVIIGDLADPIEG--GPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (257)
Q Consensus 173 ~---~~fDvIi~D~~~~~~~--~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~ 222 (257)
. ...|++++..+-|... .| .--|-...-+. +++.|++|-.+++.+..|
T Consensus 79 ~~~l~~~dv~iI~VPTPl~~~~~p-Dls~v~~aa~s-Ia~~L~kG~LVIlEST~~ 131 (436)
T COG0677 79 PEELKECDVFIICVPTPLKKYREP-DLSYVESAARS-IAPVLKKGDLVILESTTP 131 (436)
T ss_pred hhhcccCCEEEEEecCCcCCCCCC-ChHHHHHHHHH-HHHhcCCCCEEEEecCCC
Confidence 1 2689888887755432 22 11223345566 689999999999987544
No 457
>PRK08507 prephenate dehydrogenase; Validated
Probab=80.18 E-value=13 Score=32.55 Aligned_cols=88 Identities=19% Similarity=0.164 Sum_probs=52.0
Q ss_pred eEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEc
Q 025107 105 TIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGD 182 (257)
Q Consensus 105 ~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D 182 (257)
+|.+||+|. +.+++.+.+.....+|+++|.+++..+.+++. +.. + . ..+..+ +. + .|+||+-
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~-g~~-----~-~----~~~~~~-~~---~-aD~Vila 65 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALEL-GLV-----D-E----IVSFEE-LK---K-CDVIFLA 65 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHC-CCC-----c-c----cCCHHH-Hh---c-CCEEEEe
Confidence 688999875 44566666542224799999999887776542 110 0 0 112222 21 2 7999988
Q ss_pred CCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025107 183 LADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (257)
Q Consensus 183 ~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~ 220 (257)
.+.. ...+.+.. +.. ++++.+++ ..+
T Consensus 66 vp~~---------~~~~~~~~-l~~-l~~~~iv~-d~g 91 (275)
T PRK08507 66 IPVD---------AIIEILPK-LLD-IKENTTII-DLG 91 (275)
T ss_pred CcHH---------HHHHHHHH-Hhc-cCCCCEEE-ECc
Confidence 6532 13456677 577 88776554 443
No 458
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=80.03 E-value=15 Score=33.45 Aligned_cols=97 Identities=18% Similarity=0.218 Sum_probs=54.7
Q ss_pred CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHh-cCCCceeEE
Q 025107 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELE-SRKESYDVI 179 (257)
Q Consensus 102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~-~~~~~fDvI 179 (257)
+.++||+.|+|. |..+.++++..+...+++++.+++-.+.++++ ... .-+.....+..+.+. .....+|+|
T Consensus 186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~-g~~------~~i~~~~~~~~~~v~~~~~~~~d~v 258 (365)
T cd08278 186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL-GAT------HVINPKEEDLVAAIREITGGGVDYA 258 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCc------EEecCCCcCHHHHHHHHhCCCCcEE
Confidence 457899997643 34555666666666799999999888877753 110 000000112222222 124569988
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
+--... + ..+.. +.+.|+++|.++.-
T Consensus 259 ld~~g~-----~-------~~~~~-~~~~l~~~G~~v~~ 284 (365)
T cd08278 259 LDTTGV-----P-------AVIEQ-AVDALAPRGTLALV 284 (365)
T ss_pred EECCCC-----c-------HHHHH-HHHHhccCCEEEEe
Confidence 754321 1 12344 45678888887753
No 459
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=80.01 E-value=6.4 Score=37.28 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=24.9
Q ss_pred CCCeEEEEeccchHHHHHHHh---cCCCcEEEEEECCH
Q 025107 102 NPKTIFIMGGGEGSTAREILR---HKTVEKVVMCDIDE 136 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~---~~~~~~v~~VEid~ 136 (257)
...+||+||+|+ ++.++++ .+++.++|.+|-+.
T Consensus 19 ~~s~VlliG~gg--lGsEilKNLvL~GIg~~tIvD~~~ 54 (425)
T cd01493 19 ESAHVCLLNATA--TGTEILKNLVLPGIGSFTIVDGSK 54 (425)
T ss_pred hhCeEEEEcCcH--HHHHHHHHHHHcCCCeEEEECCCc
Confidence 457999999863 5555555 47899999998764
No 460
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=79.98 E-value=23 Score=30.36 Aligned_cols=75 Identities=21% Similarity=0.301 Sum_probs=49.9
Q ss_pred EEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-----cchHHHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHH
Q 025107 128 KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-----NDARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYE 202 (257)
Q Consensus 128 ~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~-----~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~ 202 (257)
+|..||=||.|.++-++|.... |.++++- +.|+..++.... |+|++|.+-|... ..+++.
T Consensus 2 ~VLIiEDD~mVaeih~~yv~~~------~gF~~vg~A~~~~ea~~~i~~~~p--DLILLDiYmPd~~-------Gi~lL~ 66 (224)
T COG4565 2 NVLIIEDDPMVAEIHRRYVKQI------PGFSVVGTAGTLEEAKMIIEEFKP--DLILLDIYMPDGN-------GIELLP 66 (224)
T ss_pred cEEEEcCchHHHHHHHHHHHhC------CCceEEEeeccHHHHHHHHHhhCC--CEEEEeeccCCCc-------cHHHHH
Confidence 5788999999999999998633 3344332 345556654323 9999999866422 246777
Q ss_pred HHHcCcCCCCcEEEEe
Q 025107 203 FVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 203 ~~~~~~L~pgGil~~~ 218 (257)
. ++..=-+..++++.
T Consensus 67 ~-ir~~~~~~DVI~iT 81 (224)
T COG4565 67 E-LRSQHYPVDVIVIT 81 (224)
T ss_pred H-HHhcCCCCCEEEEe
Confidence 7 56555566676664
No 461
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=79.91 E-value=2 Score=33.47 Aligned_cols=36 Identities=31% Similarity=0.426 Sum_probs=24.5
Q ss_pred CCeEEEEecc-chHHHHHHHhcCCCcEEEEEECCHHH
Q 025107 103 PKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEV 138 (257)
Q Consensus 103 ~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~v 138 (257)
.++|+++|+| .|+.....+...++.+++.+|-|.--
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~ 38 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVE 38 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCccee
Confidence 4689999997 45544444444578899999987544
No 462
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=79.83 E-value=26 Score=33.12 Aligned_cols=70 Identities=27% Similarity=0.472 Sum_probs=42.7
Q ss_pred eEEEEeccchHHHHHHHh----c---CCCcEEEEEECC-HHHHHH----HHhhhhhccCCCCCCCeEEE-EcchHHHHhc
Q 025107 105 TIFIMGGGEGSTAREILR----H---KTVEKVVMCDID-EEVVEF----CKSYLVVNKEAFSDPRLELV-INDARAELES 171 (257)
Q Consensus 105 ~VL~IG~G~G~~~~~l~~----~---~~~~~v~~VEid-~~vi~~----a~~~~~~~~~~~~~~rv~i~-~~Da~~~l~~ 171 (257)
+|.+||+|+. .+..+.+ . .+..+++.+||| ++-++. +++.+... .+.+++. ..|-++-+.
T Consensus 2 KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~-----~~~~~v~~t~d~~~al~- 74 (419)
T cd05296 2 KLTIIGGGSS-YTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKA-----GLPIKVHLTTDRREALE- 74 (419)
T ss_pred EEEEECCchH-hHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhh-----CCCeEEEEeCCHHHHhC-
Confidence 6889999986 5444333 1 245799999999 666544 55444432 2344554 356666553
Q ss_pred CCCceeEEEEcCC
Q 025107 172 RKESYDVIIGDLA 184 (257)
Q Consensus 172 ~~~~fDvIi~D~~ 184 (257)
.-|+|++..-
T Consensus 75 ---gadfVi~~~~ 84 (419)
T cd05296 75 ---GADFVFTQIR 84 (419)
T ss_pred ---CCCEEEEEEe
Confidence 2488887654
No 463
>PRK08223 hypothetical protein; Validated
Probab=79.71 E-value=2.5 Score=37.81 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=26.7
Q ss_pred CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHH
Q 025107 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEV 138 (257)
Q Consensus 102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~v 138 (257)
...+||++|||+ |+.....+...++.+++.+|-|..-
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve 63 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFE 63 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcc
Confidence 568999999985 5544444444678999999988533
No 464
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=79.63 E-value=5 Score=36.81 Aligned_cols=98 Identities=14% Similarity=0.151 Sum_probs=59.2
Q ss_pred CCCeEEEEeccchHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCC-CceeEE
Q 025107 102 NPKTIFIMGGGEGST-AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRK-ESYDVI 179 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~-~~fDvI 179 (257)
...+|.++|+|+=++ +..-++..+..+|.+||+++.=.++|+++=.... ++..... |..+.+.... .--|..
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~--vn~~~~~----~vv~~i~~~T~gG~d~~ 258 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHF--VNPKEVD----DVVEAIVELTDGGADYA 258 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCcee--ecchhhh----hHHHHHHHhcCCCCCEE
Confidence 457888888875443 4444555677899999999999999998732110 0111111 5666665533 356666
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
|- .. + +.+.++. ..+++.++|..++-
T Consensus 259 ~e-~~-----G------~~~~~~~-al~~~~~~G~~v~i 284 (366)
T COG1062 259 FE-CV-----G------NVEVMRQ-ALEATHRGGTSVII 284 (366)
T ss_pred EE-cc-----C------CHHHHHH-HHHHHhcCCeEEEE
Confidence 42 22 1 1235565 45667778866654
No 465
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=79.63 E-value=11 Score=33.16 Aligned_cols=74 Identities=19% Similarity=0.230 Sum_probs=40.8
Q ss_pred CCCCeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025107 101 PNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv 178 (257)
...++||++|+|+-+ ++..+.. .+..+|+++..+++-.+...+.+... ..+.+ ..+..+ .-..+|+
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~-~g~~~V~v~~R~~~~a~~l~~~~~~~------~~~~~-~~~~~~----~~~~~Di 188 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLD-LGVAEITIVNRTVERAEELAKLFGAL------GKAEL-DLELQE----ELADFDL 188 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHhhhc------cceee-cccchh----ccccCCE
Confidence 456899999985322 1223333 35578999999987655444333211 11232 112111 1256899
Q ss_pred EEEcCCCC
Q 025107 179 IIGDLADP 186 (257)
Q Consensus 179 Ii~D~~~~ 186 (257)
||...+.+
T Consensus 189 vInaTp~g 196 (278)
T PRK00258 189 IINATSAG 196 (278)
T ss_pred EEECCcCC
Confidence 99887643
No 466
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=79.53 E-value=13 Score=32.99 Aligned_cols=93 Identities=20% Similarity=0.297 Sum_probs=53.1
Q ss_pred CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEc---chHHHHhcCCCcee
Q 025107 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVIN---DARAELESRKESYD 177 (257)
Q Consensus 102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~---Da~~~l~~~~~~fD 177 (257)
+..+||++|+|. |..+.++++..+...|.+++.+++-.+.++++ ... .++.. +....-....+.+|
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~-g~~---------~~~~~~~~~~~~~~~~~~~~vd 228 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL-GAT---------ETVDPSREDPEAQKEDNPYGFD 228 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh-CCe---------EEecCCCCCHHHHHHhcCCCCc
Confidence 457999997642 44556666665544588999998888877653 110 11111 11111112335699
Q ss_pred EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025107 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (257)
Q Consensus 178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~ 217 (257)
+|+.-... ...... +.+.|+++|.++.
T Consensus 229 ~v~~~~~~------------~~~~~~-~~~~l~~~G~~v~ 255 (334)
T cd08234 229 VVIEATGV------------PKTLEQ-AIEYARRGGTVLV 255 (334)
T ss_pred EEEECCCC------------hHHHHH-HHHHHhcCCEEEE
Confidence 99853221 123444 4567889998875
No 467
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=79.35 E-value=11 Score=29.70 Aligned_cols=76 Identities=20% Similarity=0.265 Sum_probs=46.4
Q ss_pred CeEEEEeccchH---HHHHHHhcCCCcEEEEEECC--HHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HH---
Q 025107 104 KTIFIMGGGEGS---TAREILRHKTVEKVVMCDID--EEVVEFCKSYLVVNKEAFSDPRLELVINDARA------EL--- 169 (257)
Q Consensus 104 ~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid--~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~------~l--- 169 (257)
|.||+.|+++|. +++.+++. +..+|..+.-+ .+-.+...+.++. ...++.++..|..+ .+
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~-g~~~v~~~~r~~~~~~~~~l~~~l~~-----~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARR-GARVVILTSRSEDSEGAQELIQELKA-----PGAKITFIECDLSDPESIRALIEEV 74 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT-TTEEEEEEESSCHHHHHHHHHHHHHH-----TTSEEEEEESETTSHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-CceEEEEeeecccccccccccccccc-----ccccccccccccccccccccccccc
Confidence 468889987665 45555555 45688888888 3333333333331 13678888877532 22
Q ss_pred hcCCCceeEEEEcCCC
Q 025107 170 ESRKESYDVIIGDLAD 185 (257)
Q Consensus 170 ~~~~~~fDvIi~D~~~ 185 (257)
.....+.|++|..+..
T Consensus 75 ~~~~~~ld~li~~ag~ 90 (167)
T PF00106_consen 75 IKRFGPLDILINNAGI 90 (167)
T ss_dssp HHHHSSESEEEEECSC
T ss_pred cccccccccccccccc
Confidence 2234789999998764
No 468
>PRK06949 short chain dehydrogenase; Provisional
Probab=79.32 E-value=17 Score=30.75 Aligned_cols=76 Identities=14% Similarity=0.224 Sum_probs=46.0
Q ss_pred CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH------HHh--
Q 025107 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA------ELE-- 170 (257)
Q Consensus 102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~------~l~-- 170 (257)
..++||+.|+++|. +++.+++. + .+|+++..+++-++...+.+... ..+++++..|..+ .++
T Consensus 8 ~~k~ilItGasg~IG~~~a~~l~~~-G-~~Vi~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 80 (258)
T PRK06949 8 EGKVALVTGASSGLGARFAQVLAQA-G-AKVVLASRRVERLKELRAEIEAE-----GGAAHVVSLDVTDYQSIKAAVAHA 80 (258)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHhc-----CCcEEEEEecCCCHHHHHHHHHHH
Confidence 46889999965443 23344443 3 48999999988766555543321 2356777776532 121
Q ss_pred -cCCCceeEEEEcCC
Q 025107 171 -SRKESYDVIIGDLA 184 (257)
Q Consensus 171 -~~~~~fDvIi~D~~ 184 (257)
...++.|+|+..+.
T Consensus 81 ~~~~~~~d~li~~ag 95 (258)
T PRK06949 81 ETEAGTIDILVNNSG 95 (258)
T ss_pred HHhcCCCCEEEECCC
Confidence 12356899999875
No 469
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=79.20 E-value=6 Score=34.38 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=27.4
Q ss_pred CCeEEEEecc-chHHHHHHHhcCCCcEEEEEECCHHHHHHHH
Q 025107 103 PKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFCK 143 (257)
Q Consensus 103 ~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~ 143 (257)
-+++|++|+- +|......+... .+|+.|||.|.+.++..
T Consensus 42 ~k~~lI~G~YltG~~iA~~L~~~--~eV~lvDI~p~lk~ll~ 81 (252)
T PF06690_consen 42 FKQALIFGAYLTGNFIASALSKK--CEVTLVDIHPHLKELLN 81 (252)
T ss_pred cceEEEEEEEeehHHHHHHhccC--ceEEEEeCcHHHHHHhc
Confidence 4599999973 444444444432 38999999999977753
No 470
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=78.99 E-value=9.6 Score=40.15 Aligned_cols=77 Identities=18% Similarity=0.272 Sum_probs=44.2
Q ss_pred CCCeEEEEeccc-hH-HHHHHHhcCCCc------------EEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHH
Q 025107 102 NPKTIFIMGGGE-GS-TAREILRHKTVE------------KVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARA 167 (257)
Q Consensus 102 ~~~~VL~IG~G~-G~-~~~~l~~~~~~~------------~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~ 167 (257)
..++||+||+|- |. .+..+++.+... .|+++|++++-.+.+.+.++ .-.-+.+-..|..+
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~------~~~~v~lDv~D~e~ 641 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIE------NAEAVQLDVSDSES 641 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcC------CCceEEeecCCHHH
Confidence 367999999973 33 345555544322 48999999876654443221 00123333445444
Q ss_pred HHhcCCCceeEEEEcCCC
Q 025107 168 ELESRKESYDVIIGDLAD 185 (257)
Q Consensus 168 ~l~~~~~~fDvIi~D~~~ 185 (257)
..+.. ...|+|++-.+.
T Consensus 642 L~~~v-~~~DaVIsalP~ 658 (1042)
T PLN02819 642 LLKYV-SQVDVVISLLPA 658 (1042)
T ss_pred HHHhh-cCCCEEEECCCc
Confidence 43321 349999998874
No 471
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=78.94 E-value=3.1 Score=36.25 Aligned_cols=36 Identities=22% Similarity=0.423 Sum_probs=25.6
Q ss_pred CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHH
Q 025107 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEE 137 (257)
Q Consensus 102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~ 137 (257)
..++||++|+|+ |+.....+...++.+++.+|-|..
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v 67 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV 67 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 568999999973 444444444467889999987743
No 472
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=78.93 E-value=21 Score=32.23 Aligned_cols=88 Identities=20% Similarity=0.180 Sum_probs=51.9
Q ss_pred CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
..++|.+||.|. |......++..+ .+|.++|..+.. . +..++ ..+..+.+ .+-|+|+
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~fg-m~V~~~d~~~~~----~-----------~~~~~--~~~l~ell----~~sDvv~ 201 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAFG-AKVVYYSTSGKN----K-----------NEEYE--RVSLEELL----KTSDIIS 201 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcC-CEEEEECCCccc----c-----------ccCce--eecHHHHh----hcCCEEE
Confidence 568999999975 433333334344 589998874210 0 01111 22444444 3469999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~ 220 (257)
+..+... . ..++++.++|+. ||||.+|+ |.+
T Consensus 202 lh~Plt~--~-T~~li~~~~~~~-----Mk~~a~lI-N~a 232 (311)
T PRK08410 202 IHAPLNE--K-TKNLIAYKELKL-----LKDGAILI-NVG 232 (311)
T ss_pred EeCCCCc--h-hhcccCHHHHHh-----CCCCeEEE-ECC
Confidence 9887421 1 247888887775 67777665 764
No 473
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=78.92 E-value=40 Score=30.35 Aligned_cols=95 Identities=16% Similarity=0.176 Sum_probs=53.8
Q ss_pred CeEEEEeccch--HHHHHHHhcCCCcEEEEEECCHHHHHHHHhh-hhhccCCCCC-CCeEEEEcchHHHHhcCCCceeEE
Q 025107 104 KTIFIMGGGEG--STAREILRHKTVEKVVMCDIDEEVVEFCKSY-LVVNKEAFSD-PRLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 104 ~~VL~IG~G~G--~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~-~~~~~~~~~~-~rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
.+|+++|+|.= .++..|.+. + ..|+.+--++. ++..++. +..... .. ........+ .......+|+|
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~-g-~~V~~~~R~~~-~~~l~~~GL~i~~~--~~~~~~~~~~~~----~~~~~~~~Dlv 71 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA-G-HDVTLLVRSRR-LEALKKKGLRIEDE--GGNFTTPVVAAT----DAEALGPADLV 71 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-C-CeEEEEecHHH-HHHHHhCCeEEecC--CCcccccccccc----ChhhcCCCCEE
Confidence 37999999853 345565554 4 46777766666 5555553 221110 00 000111111 01123579999
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~ 217 (257)
|+..- ...+.+.+.. ++..++|+.++++
T Consensus 72 iv~vK---------a~q~~~al~~-l~~~~~~~t~vl~ 99 (307)
T COG1893 72 IVTVK---------AYQLEEALPS-LAPLLGPNTVVLF 99 (307)
T ss_pred EEEec---------cccHHHHHHH-hhhcCCCCcEEEE
Confidence 99753 2346788888 7999999986654
No 474
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=78.88 E-value=10 Score=36.90 Aligned_cols=93 Identities=11% Similarity=0.171 Sum_probs=57.5
Q ss_pred CeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH--HhcCC-CceeE
Q 025107 104 KTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--LESRK-ESYDV 178 (257)
Q Consensus 104 ~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~--l~~~~-~~fDv 178 (257)
.+++++|+|.=+ +++.+.+. + .+++++|.|++.++.+++. ..+.+++|+.+. +++.+ ++.|.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~-g-~~vvvId~d~~~~~~~~~~-----------g~~~i~GD~~~~~~L~~a~i~~a~~ 484 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAA-G-IPLVVIETSRTRVDELRER-----------GIRAVLGNAANEEIMQLAHLDCARW 484 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHC-C-CCEEEEECCHHHHHHHHHC-----------CCeEEEcCCCCHHHHHhcCccccCE
Confidence 578999987644 33444433 3 4799999999998888752 357788888653 33333 78998
Q ss_pred EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
++....+.. . +...... .+.++|+-.++...
T Consensus 485 viv~~~~~~--~------~~~iv~~--~~~~~~~~~iiar~ 515 (558)
T PRK10669 485 LLLTIPNGY--E------AGEIVAS--AREKRPDIEIIARA 515 (558)
T ss_pred EEEEcCChH--H------HHHHHHH--HHHHCCCCeEEEEE
Confidence 877655421 0 1112222 23456777676654
No 475
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=78.77 E-value=16 Score=32.47 Aligned_cols=96 Identities=23% Similarity=0.362 Sum_probs=56.6
Q ss_pred CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc--CCCcee
Q 025107 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES--RKESYD 177 (257)
Q Consensus 101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~--~~~~fD 177 (257)
.+..+||+.|+|. |..+.++++..+ .+|+++.-+++-.+.++++ .. +.-+.....+..+.+.. ..+.+|
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~~g-~~v~~~~~s~~~~~~~~~~-g~------~~v~~~~~~~~~~~l~~~~~~~~vd 229 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKARG-ARVIVVDIDDERLEFAREL-GA------DDTINVGDEDVAARLRELTDGEGAD 229 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEECCCHHHHHHHHHh-CC------CEEecCcccCHHHHHHHHhCCCCCC
Confidence 3467999998654 556667777655 5788888888888877653 21 11111222233333332 234599
Q ss_pred EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025107 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (257)
Q Consensus 178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~ 217 (257)
+|+..... .+.+.. +.+.|+++|.++.
T Consensus 230 ~vld~~g~------------~~~~~~-~~~~l~~~G~~i~ 256 (337)
T cd08261 230 VVIDATGN------------PASMEE-AVELVAHGGRVVL 256 (337)
T ss_pred EEEECCCC------------HHHHHH-HHHHHhcCCEEEE
Confidence 99865321 123455 4667888898774
No 476
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=78.75 E-value=4.4 Score=40.97 Aligned_cols=101 Identities=13% Similarity=0.204 Sum_probs=63.5
Q ss_pred CeEEEEeccc--hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhc------cCCCCC-------CCeEEEEcchHHH
Q 025107 104 KTIFIMGGGE--GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVN------KEAFSD-------PRLELVINDARAE 168 (257)
Q Consensus 104 ~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~------~~~~~~-------~rv~i~~~Da~~~ 168 (257)
++|-+||+|+ ++++..++.. + -+|+.+|.+++.++.++++.... ...+.. .|++.. .|. +-
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~-G-~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~ 389 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASK-G-TPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSY-AG 389 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH-HH
Confidence 6899999984 4455555654 4 58999999999998877654311 000000 122221 111 11
Q ss_pred HhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025107 169 LESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (257)
Q Consensus 169 l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~ 220 (257)
-..-|+||=..+... -..++.|++ +.+.++|+.+|+.|+.
T Consensus 390 ----~~~aDlViEav~E~l-------~~K~~vf~~-l~~~~~~~~ilasnTS 429 (714)
T TIGR02437 390 ----FDNVDIVVEAVVENP-------KVKAAVLAE-VEQHVREDAILASNTS 429 (714)
T ss_pred ----hcCCCEEEEcCcccH-------HHHHHHHHH-HHhhCCCCcEEEECCC
Confidence 145788887765421 124688898 7999999999998864
No 477
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=78.73 E-value=12 Score=33.74 Aligned_cols=74 Identities=19% Similarity=0.283 Sum_probs=49.9
Q ss_pred CCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchH---H------HHh
Q 025107 103 PKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDAR---A------ELE 170 (257)
Q Consensus 103 ~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~---~------~l~ 170 (257)
.+.||+-|+|.|. ++.++++. + .++..+|++++-.+...+.+...+ ++..+.-|.- + -++
T Consensus 38 g~~vLITGgg~GlGr~ialefa~r-g-~~~vl~Din~~~~~etv~~~~~~g------~~~~y~cdis~~eei~~~a~~Vk 109 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKR-G-AKLVLWDINKQGNEETVKEIRKIG------EAKAYTCDISDREEIYRLAKKVK 109 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHh-C-CeEEEEeccccchHHHHHHHHhcC------ceeEEEecCCCHHHHHHHHHHHH
Confidence 5689999998876 56777775 3 489999999998877766654321 4444444432 1 233
Q ss_pred cCCCceeEEEEcCC
Q 025107 171 SRKESYDVIIGDLA 184 (257)
Q Consensus 171 ~~~~~fDvIi~D~~ 184 (257)
+.-+..|+++.++.
T Consensus 110 ~e~G~V~ILVNNAG 123 (300)
T KOG1201|consen 110 KEVGDVDILVNNAG 123 (300)
T ss_pred HhcCCceEEEeccc
Confidence 34478999999875
No 478
>PRK06153 hypothetical protein; Provisional
Probab=78.54 E-value=2.6 Score=39.29 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=25.4
Q ss_pred CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECC
Q 025107 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDID 135 (257)
Q Consensus 102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid 135 (257)
+..+|+++|||+ |+...+.+...++.+++.||-|
T Consensus 175 ~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 175 EGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred hhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 467999999964 5545555555678999999987
No 479
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=78.30 E-value=47 Score=31.00 Aligned_cols=107 Identities=22% Similarity=0.229 Sum_probs=56.6
Q ss_pred eEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhh-hhccCCC--------CCCCeEEEEcchHHHHhcCC
Q 025107 105 TIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYL-VVNKEAF--------SDPRLELVINDARAELESRK 173 (257)
Q Consensus 105 ~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~-~~~~~~~--------~~~rv~i~~~Da~~~l~~~~ 173 (257)
+|-+||+|--+ ++..+++. + -+|+++|.+++.++..++.. +.....+ ...++++. .|..+-+
T Consensus 2 kI~vIGlG~~G~~lA~~La~~-G-~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~-~~~~~~~---- 74 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL-G-HEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRAT-TDYEDAI---- 74 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc-C-CeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEE-CCHHHHH----
Confidence 68899998543 44444443 3 47999999999887765421 1100000 01233322 2333222
Q ss_pred CceeEEEEcCCCCCCC-CcccCCchHHHHHHHHcCcCCCCcEEEEec
Q 025107 174 ESYDVIIGDLADPIEG-GPCYKLYTKSFYEFVVKPRLNPEGIFVTQA 219 (257)
Q Consensus 174 ~~fDvIi~D~~~~~~~-~p~~~L~t~ef~~~~~~~~L~pgGil~~~~ 219 (257)
+..|+||+..+.+... +...--+-.+..+. +.+.|++|-+++..+
T Consensus 75 ~~advvii~vpt~~~~~~~~d~~~v~~~~~~-i~~~l~~g~lvi~~S 120 (411)
T TIGR03026 75 RDADVIIICVPTPLKEDGSPDLSYVESAAET-IAKHLRKGATVVLES 120 (411)
T ss_pred hhCCEEEEEeCCCCCCCCCcChHHHHHHHHH-HHHhcCCCCEEEEeC
Confidence 4579999988765311 11000112344455 567788877666543
No 480
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=78.23 E-value=4 Score=38.00 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=36.4
Q ss_pred CCCeEEEEeccchHHHHHHHhcCCCcEEEEEECCHHHHHHHHh
Q 025107 102 NPKTIFIMGGGEGSTAREILRHKTVEKVVMCDIDEEVVEFCKS 144 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~ 144 (257)
.-+.|.++|.|-|.+++.+.-+.+ -+|.+||-|....+.|++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~-lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYG-LSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccC-ceEEEeccchHHHHHHHH
Confidence 347899999999999999988776 589999999888887765
No 481
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=78.17 E-value=20 Score=31.46 Aligned_cols=92 Identities=13% Similarity=0.155 Sum_probs=52.5
Q ss_pred eEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEE---EEcchHHHHhcCCCceeEE
Q 025107 105 TIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL---VINDARAELESRKESYDVI 179 (257)
Q Consensus 105 ~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i---~~~Da~~~l~~~~~~fDvI 179 (257)
+|++||+|.-+ ++..+.+. + .+|+.++.+++.++..++. ...- .+..... ...|. ... +.+|+|
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-g-~~V~~~~r~~~~~~~~~~~-g~~~---~~~~~~~~~~~~~~~----~~~-~~~d~v 70 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-G-HDVTLVARRGAHLDALNEN-GLRL---EDGEITVPVLAADDP----AEL-GPQDLV 70 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-C-CeEEEEECChHHHHHHHHc-CCcc---cCCceeecccCCCCh----hHc-CCCCEE
Confidence 69999987644 34444443 3 4899999988777665543 1110 0111110 01111 111 679999
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEE
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVT 217 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~ 217 (257)
++-.... ...+.++. ++..+.++..++.
T Consensus 71 ila~k~~---------~~~~~~~~-l~~~l~~~~~iv~ 98 (304)
T PRK06522 71 ILAVKAY---------QLPAALPS-LAPLLGPDTPVLF 98 (304)
T ss_pred EEecccc---------cHHHHHHH-HhhhcCCCCEEEE
Confidence 9876421 24567777 6888888776654
No 482
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=78.09 E-value=13 Score=31.67 Aligned_cols=75 Identities=17% Similarity=0.181 Sum_probs=45.2
Q ss_pred CCCeEEEEeccchHHHH----HHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH---------
Q 025107 102 NPKTIFIMGGGEGSTAR----EILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE--------- 168 (257)
Q Consensus 102 ~~~~VL~IG~G~G~~~~----~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~--------- 168 (257)
+.+++|+.|+. |.+.. .++++ + .+|+.++.++.-.+...+.+... ..++.++..|..+.
T Consensus 11 ~~k~ilItGa~-g~IG~~la~~l~~~-G-~~V~~~~r~~~~~~~~~~~i~~~-----~~~~~~~~~Dl~d~~~i~~~~~~ 82 (259)
T PRK08213 11 SGKTALVTGGS-RGLGLQIAEALGEA-G-ARVVLSARKAEELEEAAAHLEAL-----GIDALWIAADVADEADIERLAEE 82 (259)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHHHhc-----CCeEEEEEccCCCHHHHHHHHHH
Confidence 45789999864 44443 44443 3 48999999887666555443211 24566777766431
Q ss_pred HhcCCCceeEEEEcCC
Q 025107 169 LESRKESYDVIIGDLA 184 (257)
Q Consensus 169 l~~~~~~fDvIi~D~~ 184 (257)
+.+...+.|.|+..+.
T Consensus 83 ~~~~~~~id~vi~~ag 98 (259)
T PRK08213 83 TLERFGHVDILVNNAG 98 (259)
T ss_pred HHHHhCCCCEEEECCC
Confidence 1112246899999875
No 483
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=78.01 E-value=3.1 Score=36.38 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=32.8
Q ss_pred CCCeEEEEecc-chHHHHHHHhcCCCcEEEEEECCHHHHHHH
Q 025107 102 NPKTIFIMGGG-EGSTAREILRHKTVEKVVMCDIDEEVVEFC 142 (257)
Q Consensus 102 ~~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~a 142 (257)
+..+|+++|.| -|+++.+++.+.+..+++.+|.|..-+.-.
T Consensus 29 ~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~ 70 (263)
T COG1179 29 KQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNT 70 (263)
T ss_pred hhCcEEEEecCchhHHHHHHHHHcCCCeEEEEeccccccccc
Confidence 45689999975 488888888888999999999987655433
No 484
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=78.00 E-value=6.2 Score=36.28 Aligned_cols=77 Identities=17% Similarity=0.311 Sum_probs=47.8
Q ss_pred CCCCeEEEEeccchH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CCCcee
Q 025107 101 PNPKTIFIMGGGEGS--TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RKESYD 177 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~~~fD 177 (257)
.+.++||++|+++|. .+.+++++.+. ..++.--+++-++++++.= .+.-++....|..+-+.. +...||
T Consensus 156 ~~g~~vLv~ggsggVG~~aiQlAk~~~~-~~v~t~~s~e~~~l~k~lG-------Ad~vvdy~~~~~~e~~kk~~~~~~D 227 (347)
T KOG1198|consen 156 SKGKSVLVLGGSGGVGTAAIQLAKHAGA-IKVVTACSKEKLELVKKLG-------ADEVVDYKDENVVELIKKYTGKGVD 227 (347)
T ss_pred CCCCeEEEEeCCcHHHHHHHHHHHhcCC-cEEEEEcccchHHHHHHcC-------CcEeecCCCHHHHHHHHhhcCCCcc
Confidence 345799999997665 56788887663 4555557788888888752 122223333444444433 256799
Q ss_pred EEEEcCCC
Q 025107 178 VIIGDLAD 185 (257)
Q Consensus 178 vIi~D~~~ 185 (257)
+|+-....
T Consensus 228 vVlD~vg~ 235 (347)
T KOG1198|consen 228 VVLDCVGG 235 (347)
T ss_pred EEEECCCC
Confidence 99855543
No 485
>PLN02928 oxidoreductase family protein
Probab=77.76 E-value=23 Score=32.50 Aligned_cols=103 Identities=14% Similarity=0.069 Sum_probs=51.6
Q ss_pred CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhcc-CCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025107 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNK-EAFSDPRLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~-~~~~~~rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
..++|.+||.|. |......++..+ .+|++++....--......++... ....+... ...+..+.+ .+.|+|
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l~afG-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~ell----~~aDiV 230 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRLRPFG-VKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG--GHEDIYEFA----GEADIV 230 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCC-CEEEEECCCCChhhhhhhccccccccccccccC--cccCHHHHH----hhCCEE
Confidence 468999999986 433333333344 589999875321111000000000 00000000 122333444 457999
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~ 220 (257)
++..+... . ..++++.+.|.. ||||.+| +|.+
T Consensus 231 vl~lPlt~--~-T~~li~~~~l~~-----Mk~ga~l-INva 262 (347)
T PLN02928 231 VLCCTLTK--E-TAGIVNDEFLSS-----MKKGALL-VNIA 262 (347)
T ss_pred EECCCCCh--H-hhcccCHHHHhc-----CCCCeEE-EECC
Confidence 99987422 1 246777776664 6776655 5764
No 486
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=77.65 E-value=6.9 Score=33.25 Aligned_cols=114 Identities=16% Similarity=0.046 Sum_probs=57.4
Q ss_pred CCCCeEEEEeccchHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhhh-hccCC--CCCCCeEEEEcchHHHHhcCCCce
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHK-TVEKVVMCDIDEEVVEFCKSYLV-VNKEA--FSDPRLELVINDARAELESRKESY 176 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~a~~~~~-~~~~~--~~~~rv~i~~~Da~~~l~~~~~~f 176 (257)
.....|.++=-|+|..++-+...- +...|+.+--++ ....+..+-+ +.... -.-.+++.+-.+..... ..+.-
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e-~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~--~pq~~ 123 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAE-LTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG--APQKL 123 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchh-hcccccchhhhhhhhhhhhhhhhhhhhCCcccccC--CCCcc
Confidence 456789999999999999888752 224666553322 2122211100 00000 00112222222222221 33556
Q ss_pred eEEEEcCCCCCCC-CcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 177 DVIIGDLADPIEG-GPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 177 DvIi~D~~~~~~~-~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
|++.....++... .....-+...+++. +.+.|||||++++.
T Consensus 124 d~~~~~~~yhdmh~k~i~~~~A~~vna~-vf~~LKPGGv~~V~ 165 (238)
T COG4798 124 DLVPTAQNYHDMHNKNIHPATAAKVNAA-VFKALKPGGVYLVE 165 (238)
T ss_pred cccccchhhhhhhccccCcchHHHHHHH-HHHhcCCCcEEEEE
Confidence 6666544322100 00012234578888 79999999999885
No 487
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=77.64 E-value=31 Score=30.91 Aligned_cols=98 Identities=18% Similarity=0.199 Sum_probs=55.9
Q ss_pred CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhc-CC-Ccee
Q 025107 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELES-RK-ESYD 177 (257)
Q Consensus 101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~-~~-~~fD 177 (257)
.+..+||+.|+|. |..+.++++..+..+|.+++.+++-.+.++++ .. +.-+.....|..+.+.+ .. +.+|
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~-ga------~~~i~~~~~~~~~~l~~~~~~~~~d 243 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL-GA------TIVLDPTEVDVVAEVRKLTGGGGVD 243 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CC------CEEECCCccCHHHHHHHHhCCCCCC
Confidence 3467899997532 22344555555544889999999888888763 21 11111122333333432 22 3599
Q ss_pred EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
+|+-.... ...++. +.+.|+++|.++.-
T Consensus 244 ~vid~~g~------------~~~~~~-~~~~l~~~G~~v~~ 271 (351)
T cd08233 244 VSFDCAGV------------QATLDT-AIDALRPRGTAVNV 271 (351)
T ss_pred EEEECCCC------------HHHHHH-HHHhccCCCEEEEE
Confidence 99854321 123455 46678999988754
No 488
>PRK06172 short chain dehydrogenase; Provisional
Probab=77.53 E-value=19 Score=30.46 Aligned_cols=76 Identities=22% Similarity=0.238 Sum_probs=46.4
Q ss_pred CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hh--
Q 025107 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LE-- 170 (257)
Q Consensus 102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l~-- 170 (257)
+.+++|+.|+++|. +++.+++. + .+|..++.+++-.+...+.+... +.++.++..|..+. ++
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~-G-~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~i~~~~~~~ 78 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFARE-G-AKVVVADRDAAGGEETVALIREA-----GGEALFVACDVTRDAEVKALVEQT 78 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHHHhc-----CCceEEEEcCCCCHHHHHHHHHHH
Confidence 46789999975443 33444443 3 58999999887665544443221 24677777776432 21
Q ss_pred -cCCCceeEEEEcCC
Q 025107 171 -SRKESYDVIIGDLA 184 (257)
Q Consensus 171 -~~~~~fDvIi~D~~ 184 (257)
..-++.|+|+..+.
T Consensus 79 ~~~~g~id~li~~ag 93 (253)
T PRK06172 79 IAAYGRLDYAFNNAG 93 (253)
T ss_pred HHHhCCCCEEEECCC
Confidence 12256899998874
No 489
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=77.41 E-value=37 Score=31.44 Aligned_cols=136 Identities=15% Similarity=0.194 Sum_probs=68.9
Q ss_pred CCCCeEEEEeccchHHHHHHHhcCCC-------cEEEEEECCHHH-----HHHHHhh---hh-hccCCCCCCCeEEEEcc
Q 025107 101 PNPKTIFIMGGGEGSTAREILRHKTV-------EKVVMCDIDEEV-----VEFCKSY---LV-VNKEAFSDPRLELVIND 164 (257)
Q Consensus 101 ~~~~~VL~IG~G~G~~~~~l~~~~~~-------~~v~~VEid~~v-----i~~a~~~---~~-~~~~~~~~~rv~i~~~D 164 (257)
.+..+|.+||+|..+++....-.... .+|.....++++ ++.-++. .. +++-. ..++++.. .|
T Consensus 9 ~~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~-Lp~ni~~t-sd 86 (365)
T PTZ00345 9 CGPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIK-LPDNIVAV-SD 86 (365)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCc-CCCceEEe-cC
Confidence 35578999999998876533321111 378888888763 5544432 11 11111 12345444 45
Q ss_pred hHHHHhcCCCceeEEEEcCCCCCCCCcccCCchHHHHHHHHcC--cCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhC
Q 025107 165 ARAELESRKESYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKP--RLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVF 242 (257)
Q Consensus 165 a~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~--~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F 242 (257)
..+.+ +.-|+|++-.+. ...++.++. ++. .++++-+++ .. ..+..........+.+.+++.+
T Consensus 87 l~eav----~~aDiIvlAVPs---------q~l~~vl~~-l~~~~~l~~~~~iI-S~-aKGIe~~t~~~~~~sevi~e~l 150 (365)
T PTZ00345 87 LKEAV----EDADLLIFVIPH---------QFLESVLSQ-IKENNNLKKHARAI-SL-TKGIIVENGKPVLCSDVIEEEL 150 (365)
T ss_pred HHHHH----hcCCEEEEEcCh---------HHHHHHHHH-hccccccCCCCEEE-EE-eCCcccCCCCcccHHHHHHHHh
Confidence 54444 345888887542 224677777 676 666553333 22 1111111110123344555666
Q ss_pred CceEEEeecCccc
Q 025107 243 KCGCCALFSSYSF 255 (257)
Q Consensus 243 ~~v~~~~~~~~~~ 255 (257)
+. .....+.|+|
T Consensus 151 ~~-~~~~LsGPs~ 162 (365)
T PTZ00345 151 GI-PCCALSGANV 162 (365)
T ss_pred CC-CeEEEECCCH
Confidence 43 3444566665
No 490
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=77.17 E-value=18 Score=31.59 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=46.4
Q ss_pred HHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEEcCCCCCCCCcccCCc
Q 025107 117 AREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIGDLADPIEGGPCYKLY 196 (257)
Q Consensus 117 ~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~D~~~~~~~~p~~~L~ 196 (257)
++.+.+.....+|+++|.++...+.|++. +. +.-...+ .+.+ ..+|+|++..|- -.
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~-g~---------~~~~~~~-~~~~----~~~DlvvlavP~---------~~ 57 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALEL-GI---------IDEASTD-IEAV----EDADLVVLAVPV---------SA 57 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHT-TS---------SSEEESH-HHHG----GCCSEEEE-S-H---------HH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHC-CC---------eeeccCC-HhHh----cCCCEEEEcCCH---------HH
Confidence 45566654457999999999999998764 11 1111222 3333 346999998642 12
Q ss_pred hHHHHHHHHcCcCCCCcEEE
Q 025107 197 TKSFYEFVVKPRLNPEGIFV 216 (257)
Q Consensus 197 t~ef~~~~~~~~L~pgGil~ 216 (257)
..+++++ +...|++|.+++
T Consensus 58 ~~~~l~~-~~~~~~~~~iv~ 76 (258)
T PF02153_consen 58 IEDVLEE-IAPYLKPGAIVT 76 (258)
T ss_dssp HHHHHHH-HHCGS-TTSEEE
T ss_pred HHHHHHH-hhhhcCCCcEEE
Confidence 5688888 788899887765
No 491
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=76.91 E-value=28 Score=25.85 Aligned_cols=111 Identities=21% Similarity=0.194 Sum_probs=66.6
Q ss_pred eEEEEeccchHHH--HHHHhcCCCcEEE-EEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEEE
Q 025107 105 TIFIMGGGEGSTA--REILRHKTVEKVV-MCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVIIG 181 (257)
Q Consensus 105 ~VL~IG~G~G~~~--~~l~~~~~~~~v~-~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi~ 181 (257)
+|.+||+|..+.. ..+.+..+..+++ ++|.+++-.+.+.+.+.. . ...|..+.+.. ...|+|++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~----------~-~~~~~~~ll~~--~~~D~V~I 68 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGI----------P-VYTDLEELLAD--EDVDAVII 68 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTS----------E-EESSHHHHHHH--TTESEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcc----------c-chhHHHHHHHh--hcCCEEEE
Confidence 6899999776533 2334442334554 779999887776554332 2 56777777764 37999998
Q ss_pred cCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCCCCCCChHHHHHHHHHHhhhCCc
Q 025107 182 DLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKC 244 (257)
Q Consensus 182 D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~~~~~~~~~~~~~~~~l~~~F~~ 244 (257)
..+... -.+. +.+.|+-|--+++.- |. ..+.+..+++.+..++.--.
T Consensus 69 ~tp~~~---------h~~~----~~~~l~~g~~v~~EK-P~--~~~~~~~~~l~~~a~~~~~~ 115 (120)
T PF01408_consen 69 ATPPSS---------HAEI----AKKALEAGKHVLVEK-PL--ALTLEEAEELVEAAKEKGVK 115 (120)
T ss_dssp ESSGGG---------HHHH----HHHHHHTTSEEEEES-SS--SSSHHHHHHHHHHHHHHTSC
T ss_pred ecCCcc---------hHHH----HHHHHHcCCEEEEEc-CC--cCCHHHHHHHHHHHHHhCCE
Confidence 865321 1222 344455555444442 22 34667788888887765433
No 492
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=76.65 E-value=6.7 Score=30.80 Aligned_cols=42 Identities=21% Similarity=0.182 Sum_probs=26.5
Q ss_pred EEeccch--HHHHHHH--hcCCCcEEEEEECCHHHHHHHHhh--hhhc
Q 025107 108 IMGGGEG--STAREIL--RHKTVEKVVMCDIDEEVVEFCKSY--LVVN 149 (257)
Q Consensus 108 ~IG~G~G--~~~~~l~--~~~~~~~v~~VEid~~vi~~a~~~--~~~~ 149 (257)
|||+..| ......+ +..+..+|.++|.+|...+..+++ +.++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 6899999 6555443 233457899999999999988888 5544
No 493
>PRK07454 short chain dehydrogenase; Provisional
Probab=76.62 E-value=25 Score=29.52 Aligned_cols=76 Identities=14% Similarity=0.135 Sum_probs=44.7
Q ss_pred CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------H---
Q 025107 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------L--- 169 (257)
Q Consensus 102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l--- 169 (257)
+.+++|+.|+.+|. ++++++++ + .+|++++.+++-.+...+.... ...++.++..|..+. +
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~-G-~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~ 77 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKA-G-WDLALVARSQDALEALAAELRS-----TGVKAAAYSIDLSNPEAIAPGIAEL 77 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHHHHHHHh-----CCCcEEEEEccCCCHHHHHHHHHHH
Confidence 45678888864332 34444443 3 4899999988765444333221 124677777776432 1
Q ss_pred hcCCCceeEEEEcCC
Q 025107 170 ESRKESYDVIIGDLA 184 (257)
Q Consensus 170 ~~~~~~fDvIi~D~~ 184 (257)
.+...+.|+|+..+.
T Consensus 78 ~~~~~~id~lv~~ag 92 (241)
T PRK07454 78 LEQFGCPDVLINNAG 92 (241)
T ss_pred HHHcCCCCEEEECCC
Confidence 112246899998774
No 494
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.60 E-value=23 Score=29.68 Aligned_cols=76 Identities=18% Similarity=0.237 Sum_probs=44.4
Q ss_pred CCCeEEEEeccchH---HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHH------Hhc-
Q 025107 102 NPKTIFIMGGGEGS---TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAE------LES- 171 (257)
Q Consensus 102 ~~~~VL~IG~G~G~---~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~------l~~- 171 (257)
+.+++|++|+++|. +++.+++ .+ .+|+.++.++.-.+.+.+..... ..++..+..|..+. ++.
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~-~G-~~vi~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 76 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQ-KG-AKLALIDLNQEKLEEAVAECGAL-----GTEVRGYAANVTDEEDVEATFAQI 76 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHHHHHHHhc-----CCceEEEEcCCCCHHHHHHHHHHH
Confidence 45789999874333 2233333 33 48999999987665544433211 34667777775321 211
Q ss_pred --CCCceeEEEEcCC
Q 025107 172 --RKESYDVIIGDLA 184 (257)
Q Consensus 172 --~~~~fDvIi~D~~ 184 (257)
..++.|+|+..+.
T Consensus 77 ~~~~~~id~vi~~ag 91 (253)
T PRK08217 77 AEDFGQLNGLINNAG 91 (253)
T ss_pred HHHcCCCCEEEECCC
Confidence 1256899998764
No 495
>PLN02702 L-idonate 5-dehydrogenase
Probab=76.60 E-value=16 Score=33.13 Aligned_cols=97 Identities=18% Similarity=0.219 Sum_probs=55.4
Q ss_pred CCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEE--EEcchHHHHh----cCCC
Q 025107 102 NPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLEL--VINDARAELE----SRKE 174 (257)
Q Consensus 102 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i--~~~Da~~~l~----~~~~ 174 (257)
...+||++|+|. |..+..+++..+...|++++.++.-.+.++++ ... ..+.+ ...+..+.+. ...+
T Consensus 181 ~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (364)
T PLN02702 181 PETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQL-GAD------EIVLVSTNIEDVESEVEEIQKAMGG 253 (364)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CCC------EEEecCcccccHHHHHHHHhhhcCC
Confidence 457899997532 33455666666666789999998888888764 211 11111 1123333322 1235
Q ss_pred ceeEEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 175 SYDVIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 175 ~fDvIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
.+|+|+--... + ..+.. +.+.|+++|.++.-
T Consensus 254 ~~d~vid~~g~-----~-------~~~~~-~~~~l~~~G~~v~~ 284 (364)
T PLN02702 254 GIDVSFDCVGF-----N-------KTMST-ALEATRAGGKVCLV 284 (364)
T ss_pred CCCEEEECCCC-----H-------HHHHH-HHHHHhcCCEEEEE
Confidence 68988753221 1 22344 46678999987753
No 496
>PRK08655 prephenate dehydrogenase; Provisional
Probab=76.50 E-value=50 Score=31.30 Aligned_cols=84 Identities=24% Similarity=0.279 Sum_probs=48.9
Q ss_pred eEEEEe-cc-chH-HHHHHHhcCCCcEEEEEECCHHHH-HHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEEE
Q 025107 105 TIFIMG-GG-EGS-TAREILRHKTVEKVVMCDIDEEVV-EFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVII 180 (257)
Q Consensus 105 ~VL~IG-~G-~G~-~~~~l~~~~~~~~v~~VEid~~vi-~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvIi 180 (257)
+|++|| +| -|. +++.+.+ .+ .+|++++.+++.. +.+++. . +. ...|..+.+ ...|+|+
T Consensus 2 kI~IIGG~G~mG~slA~~L~~-~G-~~V~v~~r~~~~~~~~a~~~-g----------v~-~~~~~~e~~----~~aDvVI 63 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKE-KG-FEVIVTGRDPKKGKEVAKEL-G----------VE-YANDNIDAA----KDADIVI 63 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHH-CC-CEEEEEECChHHHHHHHHHc-C----------Ce-eccCHHHHh----ccCCEEE
Confidence 689997 34 444 3444444 33 4799999998764 334331 1 11 122333333 3579999
Q ss_pred EcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEE
Q 025107 181 GDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFV 216 (257)
Q Consensus 181 ~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~ 216 (257)
+..+.. ...+.++. +...++++.+++
T Consensus 64 lavp~~---------~~~~vl~~-l~~~l~~~~iVi 89 (437)
T PRK08655 64 ISVPIN---------VTEDVIKE-VAPHVKEGSLLM 89 (437)
T ss_pred EecCHH---------HHHHHHHH-HHhhCCCCCEEE
Confidence 876521 13567777 677888877555
No 497
>PRK13243 glyoxylate reductase; Reviewed
Probab=76.44 E-value=21 Score=32.46 Aligned_cols=90 Identities=19% Similarity=0.191 Sum_probs=50.7
Q ss_pred CCCeEEEEeccc-hH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeEE
Q 025107 102 NPKTIFIMGGGE-GS-TAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDVI 179 (257)
Q Consensus 102 ~~~~VL~IG~G~-G~-~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDvI 179 (257)
..++|.+||+|. |. +++.+.. .+ .+|.++|.++.-.. .... .+. ..+..+.+ .+-|+|
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~-~G-~~V~~~d~~~~~~~-~~~~-----------~~~--~~~l~ell----~~aDiV 208 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKG-FG-MRILYYSRTRKPEA-EKEL-----------GAE--YRPLEELL----RESDFV 208 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH-CC-CEEEEECCCCChhh-HHHc-----------CCE--ecCHHHHH----hhCCEE
Confidence 468999999976 33 3444433 34 58999998764321 1110 111 22444444 346999
Q ss_pred EEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecC
Q 025107 180 IGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAG 220 (257)
Q Consensus 180 i~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~ 220 (257)
++..+... . ..+++..+.+. .+|||.+++ |.+
T Consensus 209 ~l~lP~t~--~-T~~~i~~~~~~-----~mk~ga~lI-N~a 240 (333)
T PRK13243 209 SLHVPLTK--E-TYHMINEERLK-----LMKPTAILV-NTA 240 (333)
T ss_pred EEeCCCCh--H-HhhccCHHHHh-----cCCCCeEEE-ECc
Confidence 99987422 1 13555665444 467776654 764
No 498
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=76.40 E-value=30 Score=32.65 Aligned_cols=97 Identities=20% Similarity=0.372 Sum_probs=51.5
Q ss_pred CCCeEEEEecc-chHHH-HHHHhcCCCcEEEEEECCHHHH-HHHHhhhhhccCCCCCCCeEEEEcchHHHHhcCCCceeE
Q 025107 102 NPKTIFIMGGG-EGSTA-REILRHKTVEKVVMCDIDEEVV-EFCKSYLVVNKEAFSDPRLELVINDARAELESRKESYDV 178 (257)
Q Consensus 102 ~~~~VL~IG~G-~G~~~-~~l~~~~~~~~v~~VEid~~vi-~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~~~~fDv 178 (257)
+.++||+||.| .|.+. ++++. .+...|+++--..+=. ++|+++ +. + -+...+...++ ..+|+
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~-~g~~~i~IaNRT~erA~~La~~~-~~--------~-~~~l~el~~~l----~~~Dv 241 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAE-KGVKKITIANRTLERAEELAKKL-GA--------E-AVALEELLEAL----AEADV 241 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHh-CCCCEEEEEcCCHHHHHHHHHHh-CC--------e-eecHHHHHHhh----hhCCE
Confidence 57899999999 66654 44444 4567888876654433 334433 10 0 01112223333 67999
Q ss_pred EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEecCCC
Q 025107 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQAGPA 222 (257)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~~~~~ 222 (257)
||+....|. ...+.+-++..++.+ ...+++....|
T Consensus 242 VissTsa~~------~ii~~~~ve~a~~~r---~~~livDiavP 276 (414)
T COG0373 242 VISSTSAPH------PIITREMVERALKIR---KRLLIVDIAVP 276 (414)
T ss_pred EEEecCCCc------cccCHHHHHHHHhcc---cCeEEEEecCC
Confidence 998765432 244555555412211 12566655433
No 499
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=76.38 E-value=32 Score=30.59 Aligned_cols=98 Identities=19% Similarity=0.247 Sum_probs=53.7
Q ss_pred CCCCeEEEEeccc-hHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEEcchHHHHhcC-CCceeE
Q 025107 101 PNPKTIFIMGGGE-GSTAREILRHKTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVINDARAELESR-KESYDV 178 (257)
Q Consensus 101 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~~Da~~~l~~~-~~~fDv 178 (257)
.+..+||+.|+|+ |..+.++++..+...++++.-+++..+.++++ ... .-+........+..+.. ...+|+
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~-g~~------~~~~~~~~~~~~~~~~~~~~~~d~ 230 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAREL-GAD------DTINPKEEDVEKVRELTEGRGADL 230 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-CCC------EEecCccccHHHHHHHhCCCCCCE
Confidence 3457899997654 44556667766654588888888777776543 210 01111111112222222 245999
Q ss_pred EEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 179 IIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 179 Ii~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
|+.-... ...+.. +.+.|+++|.++.-
T Consensus 231 vld~~g~------------~~~~~~-~~~~l~~~G~~v~~ 257 (343)
T cd08236 231 VIEAAGS------------PATIEQ-ALALARPGGKVVLV 257 (343)
T ss_pred EEECCCC------------HHHHHH-HHHHhhcCCEEEEE
Confidence 9854211 123344 46678888887753
No 500
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=76.33 E-value=37 Score=30.06 Aligned_cols=97 Identities=15% Similarity=0.210 Sum_probs=55.4
Q ss_pred CCCCeEEEEeccc-hHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhhhhccCCCCCCCeEEEE-cchHHHHhcCCCcee
Q 025107 101 PNPKTIFIMGGGE-GSTAREILRH-KTVEKVVMCDIDEEVVEFCKSYLVVNKEAFSDPRLELVI-NDARAELESRKESYD 177 (257)
Q Consensus 101 ~~~~~VL~IG~G~-G~~~~~l~~~-~~~~~v~~VEid~~vi~~a~~~~~~~~~~~~~~rv~i~~-~Da~~~l~~~~~~fD 177 (257)
....+||+.|+|. |..+..+++. .+ .+|+++.-+++-.+.++++ ... .-+.... .+..+.++...+.+|
T Consensus 161 ~~g~~vlV~g~g~vG~~~~~la~~~~g-~~v~~~~~~~~~~~~~~~~-g~~------~v~~~~~~~~~~~~v~~~~~~~d 232 (338)
T PRK09422 161 KPGQWIAIYGAGGLGNLALQYAKNVFN-AKVIAVDINDDKLALAKEV-GAD------LTINSKRVEDVAKIIQEKTGGAH 232 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCC-CeEEEEeCChHHHHHHHHc-CCc------EEecccccccHHHHHHHhcCCCc
Confidence 4567999998532 2344455554 34 5899999999988888653 211 0011111 222333433233588
Q ss_pred EEEEcCCCCCCCCcccCCchHHHHHHHHcCcCCCCcEEEEe
Q 025107 178 VIIGDLADPIEGGPCYKLYTKSFYEFVVKPRLNPEGIFVTQ 218 (257)
Q Consensus 178 vIi~D~~~~~~~~p~~~L~t~ef~~~~~~~~L~pgGil~~~ 218 (257)
+++.+... .+.+.. +.+.|+++|.++.-
T Consensus 233 ~vi~~~~~------------~~~~~~-~~~~l~~~G~~v~~ 260 (338)
T PRK09422 233 AAVVTAVA------------KAAFNQ-AVDAVRAGGRVVAV 260 (338)
T ss_pred EEEEeCCC------------HHHHHH-HHHhccCCCEEEEE
Confidence 77766432 133455 56788999988753
Done!