BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025110
(257 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O23403|PPD1_ARATH PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis
thaliana GN=PPD1 PE=1 SV=1
Length = 287
Score = 310 bits (794), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 160/217 (73%), Positives = 183/217 (84%), Gaps = 4/217 (1%)
Query: 41 QAFAVPRRNAM--ALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQV 98
Q AV RR +M L++S I S TA A V FREYIDTFDGYSFKYPQNWIQV
Sbjct: 73 QVCAVGRRKSMMMGLLMSGLIVSQANL-PTAFASTPV-FREYIDTFDGYSFKYPQNWIQV 130
Query: 99 RGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRL 158
RGAGADIF+RDP VLDEN+SVE SSPSSS Y S+EDLG P+E G++VLRQYLTEFMSTRL
Sbjct: 131 RGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEFMSTRL 190
Query: 159 GVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLG 218
GV+R++NILSTSSRVADDG+LYY VEVNIKS+ANNNELAVMP+DRV LEW+RRYL+VLG
Sbjct: 191 GVKRQANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLAVLG 250
Query: 219 VENNRLYELRLQTPENVFVEEENDLRQVIDSFRVNKV 255
VEN+RLY +RLQTPE VF+EEE DLR+V+DSFRV K+
Sbjct: 251 VENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVEKI 287
>sp|P82538|PPL1_ARATH PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1
PE=1 SV=1
Length = 230
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 78/183 (42%), Gaps = 28/183 (15%)
Query: 71 AQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYK 130
A+ GF D D Y+F YP W +V G D Y+D E+VSV L P+S +
Sbjct: 75 AESKKGFLAVSDNKDAYAFLYPFGWQEVVIEGQDKVYKDVIEPLESVSVNL-VPTSKQ-- 131
Query: 131 SVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSF 190
++++ GPPK+ ++++ L + L +S DG+ YY E ++
Sbjct: 132 TIKEFGPPKQIAETLIKKVLAP--------PNQKTTLIDASEHDVDGKTYYQFEFTVQ-- 181
Query: 191 ANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVIDSF 250
A N + R L + V N Y L E + + ++ L V+DSF
Sbjct: 182 ARN---------------YTRHALGTITVFNGNFYTLTTGANERRWEKMKDRLHTVVDSF 226
Query: 251 RVN 253
++
Sbjct: 227 KIT 229
>sp|O80634|PPL2_ARATH PsbP-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=PPL2
PE=1 SV=2
Length = 238
Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 75/181 (41%), Gaps = 32/181 (17%)
Query: 77 FREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLG 136
+ ++D DGYS+ YP +W + D ++D Y+ +NV V + + ++G
Sbjct: 88 YSPFVDREDGYSYYYPSDWREFDFRAHDSAFKDRYLQLQNVRVRF---IPTEKNDIHEVG 144
Query: 137 PPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKS--FANNN 194
P +E +++ + + I RV +DG+ YY E +++ +A +
Sbjct: 145 PMEEVVYDLVKHKFA-------APNQVATIYDMKERV-EDGKNYYTFEYGLRTPIYATTS 196
Query: 195 ELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVIDSFRVNK 254
+ + V NNR Y L + E + + + L+ V DS ++ +
Sbjct: 197 -------------------FATVAVGNNRYYTLIVGANERRWRKVKKQLQVVADSLKILQ 237
Query: 255 V 255
+
Sbjct: 238 I 238
>sp|P82796|TL22_SPIOL Thylakoid lumenal 22 kDa protein (Fragment) OS=Spinacia oleracea
PE=1 SV=1
Length = 20
Score = 36.6 bits (83), Expect = 0.20, Method: Composition-based stats.
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 72 QQSVGFREYIDTFDGYSFKY 91
+QS GFREYID FDGYS Y
Sbjct: 1 EQSAGFREYIDFFDGYSLTY 20
>sp|P82337|UT019_PEA Unknown protein from spot 19 of 2D-PAGE of thylakoid (Fragments)
OS=Pisum sativum PE=1 SV=1
Length = 33
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 19/26 (73%)
Query: 178 RLYYLVEVNIKSFANNNELAVMPKDR 203
LYY VE N KS+A+NNELAV P R
Sbjct: 8 ELYYQVEANNKSYASNNELAVFPDQR 33
>sp|Q8VY52|PPD2_ARATH PsbP domain-containing protein 2, chloroplastic OS=Arabidopsis
thaliana GN=PPD2 PE=1 SV=1
Length = 232
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 82/204 (40%), Gaps = 32/204 (15%)
Query: 51 MALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDP 110
+ L + + F+ F N A + + + + Y D+ +G++ P ++ +V AGA+ + +
Sbjct: 51 LNLSILTLFFNGFLLDNKAKSMEEL--QRYTDSNNGFTLLIPSSYTKVEKAGANALFEEL 108
Query: 111 YVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTS 170
N+ V + S R KS++ G P+ K++ R +E+ ++S
Sbjct: 109 NNGSNNIGVVV---SPVRIKSLDQFGSPQFVADKLIN------AEKRKESTKEAEVVSVG 159
Query: 171 SRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRL- 229
R A G+ Y E I S +R S V +N+LY L +
Sbjct: 160 ER-AGLGQQVYEFEYKIDSTRGG----------------IKRVFSAAFVSSNKLYLLNVV 202
Query: 230 --QTPENVFVEEEN-DLRQVIDSF 250
PEN L QV+ SF
Sbjct: 203 HSDKPENPLDSSTRMSLEQVLHSF 226
>sp|Q0W4I8|GLMM_UNCMA Probable phosphoglucosamine mutase OS=Uncultured methanogenic
archaeon RC-I GN=glmM PE=3 SV=1
Length = 438
Score = 31.2 bits (69), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 81 IDTFDGYSFKYPQNWIQVRGAGADIFYR-DPYVLDENVSVELSSPSSSRYKSVED 134
I+T DG +YP+ W+ +R +G + R +DE + +L S + S K D
Sbjct: 380 INTLDGVRVEYPEGWVLIRPSGTEPKIRITAEAVDEGAAEKLYSQAESIVKRCID 434
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,645,780
Number of Sequences: 539616
Number of extensions: 3652507
Number of successful extensions: 8722
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 8714
Number of HSP's gapped (non-prelim): 14
length of query: 257
length of database: 191,569,459
effective HSP length: 115
effective length of query: 142
effective length of database: 129,513,619
effective search space: 18390933898
effective search space used: 18390933898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)