Query 025110
Match_columns 257
No_of_seqs 167 out of 315
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 02:46:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025110.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025110hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00059 PsbP domain-containin 100.0 1.3E-61 2.8E-66 433.9 21.1 223 30-254 62-286 (286)
2 PLN00042 photosystem II oxygen 100.0 1.3E-50 2.9E-55 363.4 20.4 204 27-252 32-259 (260)
3 PF01789 PsbP: PsbP; InterPro 100.0 2.7E-42 5.9E-47 295.3 16.2 158 71-252 17-174 (175)
4 PLN00067 PsbP domain-containin 100.0 3.9E-40 8.5E-45 295.4 19.0 183 43-252 41-263 (263)
5 PLN00066 PsbP domain-containin 100.0 3.1E-38 6.8E-43 285.1 19.5 179 44-254 44-260 (262)
6 PLN03152 hypothetical protein; 100.0 9.4E-29 2E-33 217.2 13.2 177 41-253 27-241 (241)
7 PF08786 DUF1795: Domain of un 98.1 0.00017 3.7E-09 58.5 14.8 127 88-250 3-130 (130)
8 PRK11615 hypothetical protein; 94.4 3.2 6.9E-05 36.4 17.6 133 84-252 47-184 (185)
9 COG5435 Uncharacterized conser 94.4 0.75 1.6E-05 39.0 10.9 133 88-256 10-145 (147)
10 PF10738 Lpp-LpqN: Probable li 93.6 2.3 5E-05 36.9 12.8 130 87-253 33-174 (175)
11 PF12712 DUF3805: Domain of un 93.3 4.4 9.6E-05 34.2 13.5 130 78-254 2-132 (153)
12 PF07174 FAP: Fibronectin-atta 81.3 23 0.0005 33.2 10.8 102 79-187 111-229 (297)
13 PF10518 TAT_signal: TAT (twin 73.7 3.2 7E-05 25.0 2.1 16 45-60 2-17 (26)
14 COG4784 Putative Zn-dependent 55.6 23 0.00049 34.5 5.1 41 213-254 375-416 (479)
15 smart00564 PQQ beta-propeller 47.0 28 0.00061 20.6 3.0 21 217-237 11-31 (33)
16 PLN00058 photosystem II reacti 44.7 17 0.00036 28.9 2.0 23 42-64 46-68 (103)
17 PF05757 PsbQ: Oxygen evolving 41.0 9.4 0.0002 34.0 0.1 32 27-58 10-42 (202)
18 TIGR01409 TAT_signal_seq Tat ( 31.6 43 0.00093 20.3 2.0 13 45-57 1-13 (29)
19 PF08006 DUF1700: Protein of u 31.4 26 0.00057 29.8 1.4 20 130-149 45-64 (181)
20 PF12318 FAD-SLDH: Membrane bo 30.6 33 0.00072 29.4 1.9 8 44-51 1-8 (168)
21 PLN00064 photosystem II protei 26.2 50 0.0011 28.6 2.1 12 45-56 34-45 (166)
22 TIGR02811 formate_TAT formate 25.0 55 0.0012 24.0 1.9 12 43-54 7-18 (66)
23 PF01011 PQQ: PQQ enzyme repea 23.3 64 0.0014 20.3 1.8 22 217-238 5-26 (38)
24 PF09211 DUF1958: Domain of un 22.0 78 0.0017 23.3 2.2 43 165-226 3-45 (65)
25 PF14202 TnpW: Transposon-enco 21.3 1.6E+02 0.0036 19.0 3.4 29 220-248 7-35 (37)
26 PF07009 DUF1312: Protein of u 21.2 2.7E+02 0.0058 22.0 5.4 25 214-238 60-84 (113)
27 PRK10882 hydrogenase 2 protein 21.1 1E+02 0.0022 29.4 3.4 15 45-59 1-15 (328)
No 1
>PLN00059 PsbP domain-containing protein 1; Provisional
Probab=100.00 E-value=1.3e-61 Score=433.86 Aligned_cols=223 Identities=72% Similarity=1.098 Sum_probs=205.7
Q ss_pred cceeccccccccccCcchHHHHHHHH--HHhhhhccCCccccccccccCceeeeeCCCceEEeccCCceeeccCCcceEE
Q 025110 30 RKILSWPLLNLQAFAVPRRNAMALIL--SSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFY 107 (257)
Q Consensus 30 ~~~~~~~~~~~~~~~~~RR~~L~~~~--~a~~~s~~~~~~~A~ae~~~gf~~y~D~~dgY~f~yP~~W~~~~~~G~dv~f 107 (257)
|-.|.|..+...+++++||++|+..+ +..+++.++.+ .|+|.++ ||+.|.|+.|||+|+||.||+++++.|+|++|
T Consensus 62 ~~~~~~~~~~~~~~~~~rr~~~~~~l~~~~~~~s~~~~~-~a~a~~~-~l~~y~D~~DGY~FlYP~GWi~V~~~G~DVvF 139 (286)
T PLN00059 62 PVAINCLTDAKQVCAVGRRKSMMMGLLMSGLIVSEANLP-TAFASIP-VFREYIDTFDGYSFKYPQNWIQVRGAGADIFF 139 (286)
T ss_pred CeeeecccchhhhhhhhhhhhhHHHHHHHHHHHHhhcCc-hhhcCCc-ccceeEcCCCCeEEeCCCCCeEeccCCCceEE
Confidence 34589999999999999999976543 33333444443 7888765 79999999999999999999999999999999
Q ss_pred eCCCCCCCcEEEEEeCCCCCCCCCcccCCChHHHHHHHHHHhhhhhhccccCCccceeEEeceeeeeCCCeeEEEEEEEe
Q 025110 108 RDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNI 187 (257)
Q Consensus 108 ~d~~~~~~nVsV~isp~~~~~~~si~dlGspeeva~~l~~~~~~~~~str~g~~~~a~ll~a~sr~~~dG~~YY~~Ey~~ 187 (257)
||+++.+|||||+|+|++++++++|+|||+|++||++|+++++++||+||+|++++++||++.+|++.||++||+|||.+
T Consensus 140 rD~Ie~~ENVSV~ISs~sss~~~sLeDLGsP~eVgerLlkqvLa~f~str~GsgReaeLVsA~~Re~~DGktYY~lEY~V 219 (286)
T PLN00059 140 RDPVVLDENLSVEFSSPSSSKYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKREANILSTSSRVADDGKLYYQVEVNI 219 (286)
T ss_pred eccCccccceEEEEecCCcccCCChHHcCCHHHHHHHHHHHHhcccccccCCCCcceEEEEeeeEEccCCcEEEEEEEEE
Confidence 99999999999999998755799999999999999999999999999999999999999999999866999999999999
Q ss_pred eccccccccccCCcccccccccceEEEEEEEEECCEEEEEEeecCcccchHhhHHHHHHhcceeeee
Q 025110 188 KSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVIDSFRVNK 254 (257)
Q Consensus 188 ~s~~~~~~~~~~p~~~~~~~e~~RH~l~~~tv~~gkLYtl~~qa~e~~W~k~~~~lr~vv~SFrv~~ 254 (257)
++++++||+|+|+.+|+|.+||.||+|++++|+|||||||++|+||++|.|+++.|++|++||+|.+
T Consensus 220 ks~~~~n~~~~~~qdr~~~~~w~RH~LA~v~V~nGkLYTL~~qtpE~RW~kvk~~f~~V~dSF~V~~ 286 (286)
T PLN00059 220 KSYANNNELAVMPQDRVARLEWNRRYLAVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVEK 286 (286)
T ss_pred EcCcccccccccccccccccccceeeEEEEEEeCCEEEEEEcCCcHHHHHHHHHHHHHHHhheeecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999975
No 2
>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional
Probab=100.00 E-value=1.3e-50 Score=363.44 Aligned_cols=204 Identities=22% Similarity=0.291 Sum_probs=179.2
Q ss_pred ccccceeccccccccccCcchHHHHHHHHHHhh-hhccCCcccccccc---------ccCceeeeeCCCceEEeccCCce
Q 025110 27 QMKRKILSWPLLNLQAFAVPRRNAMALILSSYI-FSDFGFRNTALAQQ---------SVGFREYIDTFDGYSFKYPQNWI 96 (257)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~RR~~L~~~~~a~~-~s~~~~~~~A~ae~---------~~gf~~y~D~~dgY~f~yP~~W~ 96 (257)
+.+++++.|+++...+..++||.+|++++++++ .+.++|+.+||+|+ +.||.+|. +|||+|+||.+|+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~srr~~l~~~~ga~a~~~~~~pa~aay~~~anvfg~~k~~~gF~~y~--~dgY~FlyP~~W~ 109 (260)
T PLN00042 32 ASRPSQVVCRAQEEDNSAVSRRAALALLAGAAAAGAKVSPANAAYGESANVFGKPKTNTGFLPYN--GDGFKLLVPSKWN 109 (260)
T ss_pred CCCCcceeeeccccccccccHHHHHHHHHHHHHhhcccCchhhhhcchhhccCCCCCCCCCeEee--CCCeEEecCCCCc
Confidence 567888999999998889999999998877644 48889999999874 78999996 5999999999999
Q ss_pred eec---cCCcceEEeCCCCCCCcEEEEEeCCCCCCCCCcccCCChHH----HHHHHHHHhhhhhhccccCCcc------c
Q 025110 97 QVR---GAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKE----AGRKVLRQYLTEFMSTRLGVRR------E 163 (257)
Q Consensus 97 ~~~---~~G~dv~f~d~~~~~~nVsV~isp~~~~~~~si~dlGspee----va~~l~~~~~~~~~str~g~~~------~ 163 (257)
+++ .+|+|++|+|+++.++||+|+|+|+ ++++|+|||+||| |++.|+++.+.+. |+.+.++ +
T Consensus 110 ~~ke~~~~G~dv~f~D~~~~~eNVSV~Ispt---~k~sI~dlGsPee~l~~vgylL~kq~~a~~--t~s~~Gf~p~~vat 184 (260)
T PLN00042 110 PSKEREFPGQVLRFEDNFDATSNLSVMVTPT---DKKSITDYGSPEEFLSKVSYLLGKQAYSGE--TASEGGFDANAVAT 184 (260)
T ss_pred cccccccCCceEEeeccccccccEEEEEecC---CcCCHhhcCCHHHHHHHHHHHHHhhhccCc--cccccCcCcccccc
Confidence 664 5699999999999999999999996 3689999999999 7888888888763 3333333 7
Q ss_pred eeEEeceeeeeCCCeeEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEEEEeecCcccchHh-hHH
Q 025110 164 SNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEE-END 242 (257)
Q Consensus 164 a~ll~a~sr~~~dG~~YY~~Ey~~~s~~~~~~~~~~p~~~~~~~e~~RH~l~~~tv~~gkLYtl~~qa~e~~W~k~-~~~ 242 (257)
++||++++|+ .||++||+|||.++. |++ ++++||+|+++||.|||||||++|+||+||+|+ ++.
T Consensus 185 a~Lleas~re-~dGk~YY~lE~~~~~----------ad~----d~~~RH~LatatV~~GkLYtl~aqa~EkRW~K~~~k~ 249 (260)
T PLN00042 185 AAVLESSTQE-VGGKPYYYLSVLTRT----------ADG----DEGGKHQLITATVSDGKLYICKAQAGDKRWFKGARKF 249 (260)
T ss_pred eeEEEeeeEE-eCCeEEEEEEEEEec----------CCC----CCCCceEEEEEEEECCEEEEEEecCchhhhhHHHHHH
Confidence 8999999998 899999999999997 765 689999999999999999999999999999998 557
Q ss_pred HHHHhcceee
Q 025110 243 LRQVIDSFRV 252 (257)
Q Consensus 243 lr~vv~SFrv 252 (257)
|+.|++||+|
T Consensus 250 l~~v~~SFsV 259 (260)
T PLN00042 250 VEGAASSFSV 259 (260)
T ss_pred HHHHHhceec
Confidence 9999999997
No 3
>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.
Probab=100.00 E-value=2.7e-42 Score=295.32 Aligned_cols=158 Identities=44% Similarity=0.718 Sum_probs=141.5
Q ss_pred cccccCceeeeeCCCceEEeccCCceeeccCCcceEEeCCCCCCCcEEEEEeCCCCCCCCCcccCCChHHHHHHHHHHhh
Q 025110 71 AQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYL 150 (257)
Q Consensus 71 ae~~~gf~~y~D~~dgY~f~yP~~W~~~~~~G~dv~f~d~~~~~~nVsV~isp~~~~~~~si~dlGspeeva~~l~~~~~ 150 (257)
+++..||++|.|+.+||+|.||++|+++++.|++++|+||.+..+||+|+|+|++. ..+|+|||+|++||++|+++.+
T Consensus 17 ~~~~~~~~~y~d~~~~y~f~~P~gW~~~~~~G~~v~f~d~~~~~~nvsV~v~p~~~--~~sl~~lGs~~~va~~l~~~~~ 94 (175)
T PF01789_consen 17 AEASTGFQPYTDSDDGYSFLYPSGWEEVDVSGADVVFRDPIDADENVSVVVSPVPK--DFSLEDLGSPEEVAERLLNGEL 94 (175)
T ss_dssp TT--SSEEEEEECTTTEEEEEETTEEEEESTTEEEEEEETTETTSEEEEEEEE-ST--S-SGGGG-SHHHHHHHHHHHCC
T ss_pred ccCCCCceEEEcCCCCEEEECCCCCeecCCCCeEEEEECcccccceEEEEEEecCC--cCchhhcCCHHHHHHHHhhhhc
Confidence 45788999999999999999999999999999999999999999999999999864 4499999999999999999888
Q ss_pred hhhhccccCCccceeEEeceeeeeCCCeeEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEEEEee
Q 025110 151 TEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQ 230 (257)
Q Consensus 151 ~~~~str~g~~~~a~ll~a~sr~~~dG~~YY~~Ey~~~s~~~~~~~~~~p~~~~~~~e~~RH~l~~~tv~~gkLYtl~~q 230 (257)
.++ ++++.++||++++++ .+|++||+|||.+++ |+ ++.||+|+++++.+||||+|++|
T Consensus 95 ~~~-----~~~~~a~li~a~~~~-~~g~~yY~~Ey~~~~----------~~------~~~rh~l~~~tv~~g~lY~l~~~ 152 (175)
T PF01789_consen 95 ASP-----GSGREAELISASERE-VDGKTYYEYEYTVQS----------PN------EGRRHNLAVVTVKNGKLYTLTAQ 152 (175)
T ss_dssp CHC-----TSSEEEEEEEEEEEE-ETTEEEEEEEEEEEE----------TT------EEEEEEEEEEEEETTEEEEEEEE
T ss_pred ccc-----cCCcceEEEEeeeee-cCCccEEEEEEEecc----------CC------CcccEEEEEEEEECCEEEEEEEE
Confidence 774 445899999999999 789999999999987 43 37999999999999999999999
Q ss_pred cCcccchHhhHHHHHHhcceee
Q 025110 231 TPENVFVEEENDLRQVIDSFRV 252 (257)
Q Consensus 231 a~e~~W~k~~~~lr~vv~SFrv 252 (257)
++|++|+++++.|++|++||+|
T Consensus 153 a~e~~w~k~~~~l~~iv~SF~v 174 (175)
T PF01789_consen 153 APESRWDKVEPKLRKIVDSFRV 174 (175)
T ss_dssp EEHHHHHTCHHHHHHHHHC-EE
T ss_pred cCHHHHHHHHHHHHHHHhcEEe
Confidence 9999999999999999999998
No 4
>PLN00067 PsbP domain-containing protein 6; Provisional
Probab=100.00 E-value=3.9e-40 Score=295.36 Aligned_cols=183 Identities=17% Similarity=0.225 Sum_probs=151.6
Q ss_pred cCcchHHHHHHHHHHhhhhccCC-cccccc----------ccccCceeeeeC-----------CCceEEeccCCceeecc
Q 025110 43 FAVPRRNAMALILSSYIFSDFGF-RNTALA----------QQSVGFREYIDT-----------FDGYSFKYPQNWIQVRG 100 (257)
Q Consensus 43 ~~~~RR~~L~~~~~a~~~s~~~~-~~~A~a----------e~~~gf~~y~D~-----------~dgY~f~yP~~W~~~~~ 100 (257)
....||++|.+++.+.+++.... ++.|+. +...||..|... ..||+|+||.+|+++++
T Consensus 41 ~~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~lp~~~~~~~~~~f~~~~~~tpalra~~i~gY~FlyP~gW~~v~V 120 (263)
T PLN00067 41 VVIHRRELLLGLALAPLILIAPEPPAEAREVEVGSYLPPSPSDPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQTRV 120 (263)
T ss_pred chhHHHHHHhhhhhhhhhhccCCchhhhheehhhcccCCCCCCCceEEEecCCCCCcccccCCcccceEeCCCCCcCccc
Confidence 45789999998866555443333 333332 124588888653 45899999999999888
Q ss_pred C----C-----------cceEEeCCCCCCCcEEEEEeCCCC---CCCCCcccCCChHHHHHHHHHHhhhhhhccccCCcc
Q 025110 101 A----G-----------ADIFYRDPYVLDENVSVELSSPSS---SRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRR 162 (257)
Q Consensus 101 ~----G-----------~dv~f~d~~~~~~nVsV~isp~~~---~~~~si~dlGspeeva~~l~~~~~~~~~str~g~~~ 162 (257)
+ | +|++|+|+. ++||+|+|+|+.. .+.++|+|||+|++|+++|++...+ ++++
T Consensus 121 s~~~sGnycqp~c~~p~~dv~F~D~~--dgnVSVIVSPV~r~t~k~~~sIeDlGsPeeVl~~Lg~~v~g-------~~~~ 191 (263)
T PLN00067 121 ANILSGNYCQPKCAEPWVEVKFEDEK--QGKVQVVASPLIRLTNKPNATIEEIGSPEKLIASLGPFVTG-------NSYD 191 (263)
T ss_pred cccccCccccccccCCCceEEEeCCC--CCCEEEEEecccccccCCCCChHHccCHHHHHHHhhHHhhc-------CCCC
Confidence 5 4 799999954 7899999999732 2468999999999999999887665 3468
Q ss_pred ceeEEeceeeeeCCCeeEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEEEEeecCcccchHhhHH
Q 025110 163 ESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEEND 242 (257)
Q Consensus 163 ~a~ll~a~sr~~~dG~~YY~~Ey~~~s~~~~~~~~~~p~~~~~~~e~~RH~l~~~tv~~gkLYtl~~qa~e~~W~k~~~~ 242 (257)
+++||++++++ .||++||+|||.++. ++ ++||+|+++++++|+||||++|++|+||+|+++.
T Consensus 192 ~~eLLeAs~re-~dGktYY~~E~~tp~----------a~-------~gRHnLataTV~~GkLYtf~asanEkRW~K~k~~ 253 (263)
T PLN00067 192 PDELLETSVEK-IGDQTYYKYVLETPF----------AL-------TGSHNLAKATAKGNTVVLFVVSASDKQWQSSEKT 253 (263)
T ss_pred CcceEEeeeEe-eCCeEEEEEEEEecC----------CC-------CCceEEEEEEEECCEEEEEEecCCHHHHHHHHHH
Confidence 88999999999 799999999999976 43 6999999999999999999999999999999999
Q ss_pred HHHHhcceee
Q 025110 243 LRQVIDSFRV 252 (257)
Q Consensus 243 lr~vv~SFrv 252 (257)
|++|++||+|
T Consensus 254 l~~V~dSFsV 263 (263)
T PLN00067 254 LKAILDSFQA 263 (263)
T ss_pred HHHHHHhccC
Confidence 9999999986
No 5
>PLN00066 PsbP domain-containing protein 4; Provisional
Probab=100.00 E-value=3.1e-38 Score=285.11 Aligned_cols=179 Identities=26% Similarity=0.381 Sum_probs=148.3
Q ss_pred CcchHHHHHHHHHHhhhhccCCcccccc--------------c-cccCceeeeeCC-------------CceEEeccCCc
Q 025110 44 AVPRRNAMALILSSYIFSDFGFRNTALA--------------Q-QSVGFREYIDTF-------------DGYSFKYPQNW 95 (257)
Q Consensus 44 ~~~RR~~L~~~~~a~~~s~~~~~~~A~a--------------e-~~~gf~~y~D~~-------------dgY~f~yP~~W 95 (257)
.++||.+|+.+++++.++.++.+..++| + ...||++|..+. .+|+|+||.+|
T Consensus 44 ~~~rr~~~~s~~~~~~~~~~~~~~~~~a~~~g~~ag~~~~~s~~~~~g~~~~~rp~~~~Gg~G~~~~~i~~Y~F~yP~GW 123 (262)
T PLN00066 44 AVSRRSALASGAAAASSAVLAFPGEGLAVKQGLLAGRVPGLSEPDENGWRTYRRPEGKSGGHGVGWSEITPYSFKVPQGW 123 (262)
T ss_pred hhhHHHHHHHHHHHHhhhhhcCCcchhhhhhcccccCCCCCCCccccceEEEecCccccCcCCCCccccCCeEEECCCCC
Confidence 5799999998766544333444333332 1 246788888753 57999999999
Q ss_pred eeeccC-----CcceEEeCCCCCCCcEEEEEeCCC-----CCCCCCcccCCChHHHHHHHHHHhhhhhhccccCCcccee
Q 025110 96 IQVRGA-----GADIFYRDPYVLDENVSVELSSPS-----SSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESN 165 (257)
Q Consensus 96 ~~~~~~-----G~dv~f~d~~~~~~nVsV~isp~~-----~~~~~si~dlGspeeva~~l~~~~~~~~~str~g~~~~a~ 165 (257)
+++.++ |+++.|++..+.++||+|+|+|+. ..++++|+|||+||+|++.|++++++. ..++++
T Consensus 124 ~ev~VS~~d~gg~~vd~Rf~~~~~~nvsVvVspv~rla~~~~~~~sI~dLGspeeVi~~l~~~v~g~-------~~~e~e 196 (262)
T PLN00066 124 EEVPVSIADLGGTEIDLRFASDKEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVISGFGPELIGE-------PVEEGK 196 (262)
T ss_pred eEeecccccCCCCceEEEeccCCCccEEEEEeccccccccccCCCChHHcCCHHHHHHHHHHHhcCC-------Cccccc
Confidence 999887 777777766678899999999984 126899999999999999999987764 246899
Q ss_pred EEeceeeeeCCCeeEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEEEEeecCcccchHhhHHHHH
Q 025110 166 ILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQ 245 (257)
Q Consensus 166 ll~a~sr~~~dG~~YY~~Ey~~~s~~~~~~~~~~p~~~~~~~e~~RH~l~~~tv~~gkLYtl~~qa~e~~W~k~~~~lr~ 245 (257)
||++++++ .||++||+||| . ||+|+++||.+||||+|++|+||+||+|+++.|++
T Consensus 197 Ll~a~~re-~dGktYY~~E~---~---------------------rH~LasaTV~~GrLYt~~asape~rW~k~~~~lr~ 251 (262)
T PLN00066 197 VLSMEVAE-HSGRTYYQFEL---P---------------------PHTLVTATAAGNRVYIFSVTANGLQWKRHYKDLKR 251 (262)
T ss_pred eeEeeeee-cCCcEEEEEEE---e---------------------CceEEEEEEECCEEEEEEeecchHhhHHHHHHHHH
Confidence 99999988 79999999999 2 59999999999999999999999999999999999
Q ss_pred Hhcceeeee
Q 025110 246 VIDSFRVNK 254 (257)
Q Consensus 246 vv~SFrv~~ 254 (257)
|++||+|+.
T Consensus 252 v~dSF~V~~ 260 (262)
T PLN00066 252 IAKSFRVVT 260 (262)
T ss_pred Hhhceeeec
Confidence 999999964
No 6
>PLN03152 hypothetical protein; Provisional
Probab=99.96 E-value=9.4e-29 Score=217.19 Aligned_cols=177 Identities=20% Similarity=0.252 Sum_probs=131.0
Q ss_pred cccCcchHHHHHHHHHHhhhhcc--CCcccccccc-------------ccCceeeeeCCCceEEeccCCceeeccC----
Q 025110 41 QAFAVPRRNAMALILSSYIFSDF--GFRNTALAQQ-------------SVGFREYIDTFDGYSFKYPQNWIQVRGA---- 101 (257)
Q Consensus 41 ~~~~~~RR~~L~~~~~a~~~s~~--~~~~~A~ae~-------------~~gf~~y~D~~dgY~f~yP~~W~~~~~~---- 101 (257)
..|+.+||+++.-.+++.++++. .+.+.+++++ ...|-.|. ++||++-||..+...-.+
T Consensus 27 ~~~~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nt~~w~~~~--g~gf~~~~pp~f~di~e~~~~~ 104 (241)
T PLN03152 27 SRCGASRRDFILHTASLCASSLAAQNPLPPSLADPSKPSKPLLSGIANTKSWFQFY--GDGFSIRVPPSFEDIMEPEDYN 104 (241)
T ss_pred ccccccccceeeehhHHHHhhhhcCCCCCccccCCCCCCCchheeeecchhhhhhh--CCceEEeCCCChhhhcChhhcc
Confidence 45678899998766554444333 3344455542 22233332 799999999887653211
Q ss_pred ------C-------cceEEeCCCCCCCcEEEEEeCCC-----CCCCCCcccCCChHHHHHHHHHHhhhhhhccccCCc-c
Q 025110 102 ------G-------ADIFYRDPYVLDENVSVELSSPS-----SSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVR-R 162 (257)
Q Consensus 102 ------G-------~dv~f~d~~~~~~nVsV~isp~~-----~~~~~si~dlGspeeva~~l~~~~~~~~~str~g~~-~ 162 (257)
| -.++|..| |..|||||+|+|++ -.+.++|.|||+|+|||+.++ + .|.. .
T Consensus 105 ~g~~~yg~~akp~~~~aRf~s~-D~sEnVSVVIspv~~LK~tfle~kDLtDLGsp~EVgkv~v-----P-----~g~~~~ 173 (241)
T PLN03152 105 AGLSLYGDKAKPRTFAARFASP-DGSEVLSVVIRPSNQLKITFLEAKDITDLGSLKEAAKIFV-----P-----GGATLY 173 (241)
T ss_pred cccceecCCCCCcceeeeecCC-CCCceEEEEEecCccccccccccCChhHcCCHHHHHHhhC-----C-----Cccccc
Confidence 2 14678876 67999999999974 114899999999999997765 2 1210 1
Q ss_pred ceeEEeceeeeeCCCeeEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEEEEeecCcccchHhhHH
Q 025110 163 ESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEEND 242 (257)
Q Consensus 163 ~a~ll~a~sr~~~dG~~YY~~Ey~~~s~~~~~~~~~~p~~~~~~~e~~RH~l~~~tv~~gkLYtl~~qa~e~~W~k~~~~ 242 (257)
.++.++. +++ .||++||+|||.+. .||.|++++|.+||||||+++++|+||+|++++
T Consensus 174 saR~iel-~~E-~dGKtYY~lEy~v~---------------------~RH~LaTVaVsrGKLYTl~aSt~EkRW~Kvk~k 230 (241)
T PLN03152 174 SARTIKV-KEE-EGIRTYYFYEFGRD---------------------EQHVALVATVNSGKAYIAGATAPESKWDDDGVK 230 (241)
T ss_pred ccceeee-eee-cCCceeEEEEEEeC---------------------CcEEEEEEEEcCCeEEEEecCCchhchHHHHHH
Confidence 3444444 345 79999999999972 699999999999999999999999999999999
Q ss_pred HHHHhcceeee
Q 025110 243 LRQVIDSFRVN 253 (257)
Q Consensus 243 lr~vv~SFrv~ 253 (257)
|+.+++||.|+
T Consensus 231 fr~aa~SFsV~ 241 (241)
T PLN03152 231 LRSAAISLTVL 241 (241)
T ss_pred HHHHHhheeeC
Confidence 99999999985
No 7
>PF08786 DUF1795: Domain of unknown function (DUF1795); InterPro: IPR014894 This is a bacterial protein of unknown function. It forms an antiparallel beta sheet structure and contains some alpha helical regions. ; PDB: 1TU1_A 3LYD_A.
Probab=98.12 E-value=0.00017 Score=58.47 Aligned_cols=127 Identities=12% Similarity=0.088 Sum_probs=84.6
Q ss_pred EEeccCCceeeccCCcceEEeCCCCCCCcEEEEEeCCCCCCCCCcccCCChHHHHHHHHHHhhhhhhccccCCccceeEE
Q 025110 88 SFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNIL 167 (257)
Q Consensus 88 ~f~yP~~W~~~~~~G~dv~f~d~~~~~~nVsV~isp~~~~~~~si~dlGspeeva~~l~~~~~~~~~str~g~~~~a~ll 167 (257)
+|..|.+|..... +...+.|+....-|+.|+..+++. . .+.++...+.+++.-.. ...-+++
T Consensus 3 ~~~lP~~~~D~t~--nv~~~~~~~~~~~slvIsR~~l~~--g------~tl~~~~~~q~~~l~~~--------l~~~~~~ 64 (130)
T PF08786_consen 3 SLTLPDGWQDRTM--NVLVLPDSGGSGPSLVISRDPLPD--G------ETLEDYLQRQLAQLRKQ--------LPGFQLV 64 (130)
T ss_dssp EEEEETTSEE--B--EEEEE--BTTB-EEEEEEEE---T--T------S-HHHHHHHHHHHHHCC--------STT-EEE
T ss_pred eEeCCCcceeceE--EEEEccCCCCCcceEEEEeccCCC--C------CCHHHHHHHHHHHHHhh--------CCCcEEE
Confidence 5788999998665 234455543334566666666542 2 35566666655543221 2345666
Q ss_pred eceeeeeCCCeeEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEEC-CEEEEEEeecCcccchHhhHHHHHH
Q 025110 168 STSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVEN-NRLYELRLQTPENVFVEEENDLRQV 246 (257)
Q Consensus 168 ~a~sr~~~dG~~YY~~Ey~~~s~~~~~~~~~~p~~~~~~~e~~RH~l~~~tv~~-gkLYtl~~qa~e~~W~k~~~~lr~v 246 (257)
+...-+ .+|.+-+.++|.-.. . ...-|+..++...+ +++|+|+.+++....+..++.++.|
T Consensus 65 ~~~~~~-l~~~~a~~l~~~~~~----------~-------g~~v~Q~q~~~~~~~~~~l~~T~t~~~~~~~~~~~~~~~i 126 (130)
T PF08786_consen 65 ERQPIT-LGGRPARELEYSFRS----------G-------GQPVYQRQAAVLLPGRRVLVFTYTAPGPFTEEQRAHWEAI 126 (130)
T ss_dssp EEEEEE-ETTEEEEEEEEEEEE----------T-------TCEEEEEEEEEEEC-CCEEEEEEEEECCCHHHHHHHHHHH
T ss_pred eeEEEE-eCCCCeEEEEEEEee----------C-------CEEEEEEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHHHH
Confidence 655555 789999999999876 2 25678888888888 9999999999999999999999999
Q ss_pred hcce
Q 025110 247 IDSF 250 (257)
Q Consensus 247 v~SF 250 (257)
++||
T Consensus 127 ~~Sf 130 (130)
T PF08786_consen 127 LKSF 130 (130)
T ss_dssp HCT-
T ss_pred HhcC
Confidence 9998
No 8
>PRK11615 hypothetical protein; Provisional
Probab=94.43 E-value=3.2 Score=36.41 Aligned_cols=133 Identities=15% Similarity=0.210 Sum_probs=86.3
Q ss_pred CCceEEeccCCceeeccC-Cc----ceEEeCCCCCCCcEEEEEeCCCCCCCCCcccCCChHHHHHHHHHHhhhhhhcccc
Q 025110 84 FDGYSFKYPQNWIQVRGA-GA----DIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRL 158 (257)
Q Consensus 84 ~dgY~f~yP~~W~~~~~~-G~----dv~f~d~~~~~~nVsV~isp~~~~~~~si~dlGspeeva~~l~~~~~~~~~str~ 158 (257)
..+.+|.+|.++...... |+ --.|-|+. ...+-++|-+. . +-++ .+..+.+|.++--. |
T Consensus 47 dGKl~FtLPag~sdqsgk~Gtq~nn~~vYad~t--g~kavIVi~gD----~-~~~~---Ld~la~rl~~qQr~-----r- 110 (185)
T PRK11615 47 DGKLSFTLPADMSDQSGKLGTQANNMHVYADAT--GQKAVIVILGD----D-TNED---LAVLAKRLEDQQRS-----R- 110 (185)
T ss_pred ccEEEEEcCCccccccccccccccceEEEEcCC--CCEEEEEEeCC----C-Chhh---HHHHHHHHHHHHHh-----h-
Confidence 467999999999965443 32 34677743 34443333321 1 1122 34566777665322 1
Q ss_pred CCccceeEEeceeeeeCCCeeEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEEEEeecCcccchH
Q 025110 159 GVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVE 238 (257)
Q Consensus 159 g~~~~a~ll~a~sr~~~dG~~YY~~Ey~~~s~~~~~~~~~~p~~~~~~~e~~RH~l~~~tv~~gkLYtl~~qa~e~~W~k 238 (257)
...-.++.-+.-+ .+|+++++++-.+... | ..--.-++++..++||-||.+..|.+.-.+
T Consensus 111 --dp~lqvvsnK~i~-i~G~~~qQLDS~~t~~-----------G------qk~~SSvvL~~v~~rl~tlQitlpA~nqqq 170 (185)
T PRK11615 111 --DPQLQVVTNKAIE-LKGHKLQQLDSIISAK-----------G------QTAYSSVVLGKVDNQLLTMQITLPADNQQQ 170 (185)
T ss_pred --CcCceeecceeEE-ECCeeeEEeeeeeecC-----------C------ceEEEEEEEEeeCCeEEEEEEecCCCCHHH
Confidence 1234556555555 7999999999888651 1 223333456777999999999999999888
Q ss_pred hhHHHHHHhcceee
Q 025110 239 EENDLRQVIDSFRV 252 (257)
Q Consensus 239 ~~~~lr~vv~SFrv 252 (257)
.....+.|+++..+
T Consensus 171 aq~~ae~ii~tl~~ 184 (185)
T PRK11615 171 AQTTAENIINTLVI 184 (185)
T ss_pred HHHHHHHHHhheec
Confidence 88889999988764
No 9
>COG5435 Uncharacterized conserved protein [Function unknown]
Probab=94.38 E-value=0.75 Score=39.01 Aligned_cols=133 Identities=19% Similarity=0.162 Sum_probs=78.6
Q ss_pred EEeccCCceeeccCCcceEEeCCCCCCCcEEEEEe--CCCCCCCCCcccCCChHHHHHHHHHHhhhhhhccccCCcccee
Q 025110 88 SFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELS--SPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESN 165 (257)
Q Consensus 88 ~f~yP~~W~~~~~~G~dv~f~d~~~~~~nVsV~is--p~~~~~~~si~dlGspeeva~~l~~~~~~~~~str~g~~~~a~ 165 (257)
.|.+|+.|.-..+. ...+.++. ..-++.+|+ ++.. +-..+ +...+.+..+-.. .+ .-+
T Consensus 10 ~l~lP~~w~DrSvN--vf~~~~~g--t~~~sfvIsRd~~~~-------g~~~~-~y~~rql~~l~k~-----Lp---gy~ 69 (147)
T COG5435 10 TLELPAAWQDRSVN--VFVSGDNG--TSGFSFVISRDPLEP-------GDTFP-EYVQRQLALLRKQ-----LP---GYE 69 (147)
T ss_pred eEcCcchhccceEE--EEEecCCC--cceeEEEEecCCCCC-------CCcHH-HHHHHHHHHHHhh-----CC---CeE
Confidence 68899999976542 23345543 333444444 3321 11223 3333332221111 11 134
Q ss_pred EEeceeeeeCCCeeEEEEEEEeeccccccccccCCcccccccccce-EEEEEEEEECCEEEEEEeecCcccchHhhHHHH
Q 025110 166 ILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDR-RYLSVLGVENNRLYELRLQTPENVFVEEENDLR 244 (257)
Q Consensus 166 ll~a~sr~~~dG~~YY~~Ey~~~s~~~~~~~~~~p~~~~~~~e~~R-H~l~~~tv~~gkLYtl~~qa~e~~W~k~~~~lr 244 (257)
+..-.+-+ ++|..-...+|.-.+ |. .+++| +++.+..-.++++-++++.++..-=++.++...
T Consensus 70 ~~~~~e~~-v~~~aa~~~~y~w~~----------~~-----~~~r~v~q~~~~i~~g~~vLifT~Tt~~~ftp~q~~~~~ 133 (147)
T COG5435 70 LHHRREIE-VGGAAAPLLDYQWTS----------PE-----GEQRRVQQRQVFIERGDTVLIFTLTTPGEFTPSQKKAWE 133 (147)
T ss_pred Eeeccccc-cCccccceeEEEeec----------CC-----CCCceEEEEEeecccCCeEEEEEecCCCCCCHHHHHHHH
Confidence 44443333 688877777777765 31 23444 444554455789999999999999999999999
Q ss_pred HHhcceeeeecc
Q 025110 245 QVIDSFRVNKVS 256 (257)
Q Consensus 245 ~vv~SFrv~~~~ 256 (257)
+++.||....-+
T Consensus 134 ~~I~Sf~p~~~~ 145 (147)
T COG5435 134 QVIQSFVPNPPE 145 (147)
T ss_pred HHHHhcCCCCCC
Confidence 999999876544
No 10
>PF10738 Lpp-LpqN: Probable lipoprotein LpqN; InterPro: IPR019674 This protein is conserved in Mycobacteriaceae and is likely to be a lipoprotein [].
Probab=93.60 E-value=2.3 Score=36.94 Aligned_cols=130 Identities=17% Similarity=0.124 Sum_probs=75.6
Q ss_pred eEEeccCCceeeccCCc---c--eEEeCC-CCCCCcEEEEEeCCCCCCCCCcccCCChHHHHHHHHHH--hhhhhhcccc
Q 025110 87 YSFKYPQNWIQVRGAGA---D--IFYRDP-YVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQ--YLTEFMSTRL 158 (257)
Q Consensus 87 Y~f~yP~~W~~~~~~G~---d--v~f~d~-~~~~~nVsV~isp~~~~~~~si~dlGspeeva~~l~~~--~~~~~~str~ 158 (257)
-++-.|.||.....+.. - +..... ....-|+.|+|..+.+ +|. |+|+.+.=-.. .+..
T Consensus 33 v~lP~P~GW~~~~~~~~~~a~~vi~~~~~~~~~~Pnavv~V~kL~G-------~~D-p~e~l~~a~~d~~~l~g------ 98 (175)
T PF10738_consen 33 VSLPTPPGWEPAPDPNPPWAYAVIVDPQADGGFPPNAVVTVSKLTG-------DFD-PAEALEHAPADAQNLPG------ 98 (175)
T ss_pred EeccCCcCcccCCCCCCCceEEEEEeccccCCCCCceEEEEEeccC-------CCC-HHHHHHhchhhHhhCcC------
Confidence 56667899998755422 1 222221 1123588899988764 443 55554421111 1111
Q ss_pred CCccceeEEeceeeeeCCCeeEEEEEEEeeccccccccccCCcccccccccceEEEEEEEE--ECC--EEEEEEeecCcc
Q 025110 159 GVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGV--ENN--RLYELRLQTPEN 234 (257)
Q Consensus 159 g~~~~a~ll~a~sr~~~dG~~YY~~Ey~~~s~~~~~~~~~~p~~~~~~~e~~RH~l~~~tv--~~g--kLYtl~~qa~e~ 234 (257)
.+-++.+.-+ -+|-+-+.+|-.-+. .+ ..+|....+.| .++ +|..|++++.+.
T Consensus 99 -----~~~~~~s~~~-~~GfpS~~i~GtY~~----------~g-------~~~~~~~r~VV~~~~~~~Ylvqltvt~~~~ 155 (175)
T PF10738_consen 99 -----FRELDGSPSD-FSGFPSSQIEGTYDK----------DG-------MRLHTSQRTVVIPGDDQRYLVQLTVTTTAD 155 (175)
T ss_pred -----cccccCCccc-cCCCceeEEEEEEee----------CC-------EEeEeEEEEEEEeCCCcEEEEEEEeecccc
Confidence 2244444444 688888888844432 11 12333322222 233 666788889999
Q ss_pred cchHhhHHHHHHhcceeee
Q 025110 235 VFVEEENDLRQVIDSFRVN 253 (257)
Q Consensus 235 ~W~k~~~~lr~vv~SFrv~ 253 (257)
+-....+..+.|++.|+|.
T Consensus 156 qa~~~~~a~~aI~~g~~It 174 (175)
T PF10738_consen 156 QAVALADATEAIDEGFTIT 174 (175)
T ss_pred chhhhhhHHHHHHcCCEec
Confidence 9999999999999999985
No 11
>PF12712 DUF3805: Domain of unknown function (DUF3805); InterPro: IPR024315 This entry represents an N-terminal domain found in a family of bacterial proteins, whose function is unknown. In two related Bacteroides species, the gene for members of this family lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1tui, also of unknown function. The domain carries four conserved tryptophan residues.; PDB: 3HLZ_A.
Probab=93.31 E-value=4.4 Score=34.22 Aligned_cols=130 Identities=18% Similarity=0.351 Sum_probs=63.8
Q ss_pred eeeeeCCCceEEeccCCceeeccCCcc-eEEeCCCCCCCcEEEEEeCCCCCCCCCcccCCChHHHHHHHHHHhhhhhhcc
Q 025110 78 REYIDTFDGYSFKYPQNWIQVRGAGAD-IFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMST 156 (257)
Q Consensus 78 ~~y~D~~dgY~f~yP~~W~~~~~~G~d-v~f~d~~~~~~nVsV~isp~~~~~~~si~dlGspeeva~~l~~~~~~~~~st 156 (257)
.-|..+..=|+..||.+|.+.. .|.+ ..|.||..=.+|..+..-. + |+. ..|+..+++.+..
T Consensus 2 kKfiSpg~WFS~~YP~~W~EfE-D~E~sflFYnp~~WTGNfRISayk--~---------~~~-~ygk~~i~~EL~e---- 64 (153)
T PF12712_consen 2 KKFISPGAWFSMEYPADWNEFE-DGEGSFLFYNPDQWTGNFRISAYK--G---------GSA-QYGKECIRQELKE---- 64 (153)
T ss_dssp EEEE-GGG-EEEEE-TT-EEE----TTEEEEE-SSS---EEEEEEEE-------------ST-THHHHHHHHHHHH----
T ss_pred CcccCCCceEEEecCCCcchhc-cCCcceEEEChHHhcCceEEEEEe--c---------ccc-cchHHHHHHHHHh----
Confidence 4566667779999999999987 3444 4689998878888655432 1 111 3455555655554
Q ss_pred ccCCccceeEEeceeeeeCCCeeEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEEEEeecCcccc
Q 025110 157 RLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVF 236 (257)
Q Consensus 157 r~g~~~~a~ll~a~sr~~~dG~~YY~~Ey~~~s~~~~~~~~~~p~~~~~~~e~~RH~l~~~tv~~gkLYtl~~qa~e~~W 236 (257)
+..+.++.... ..--|.-|.--.. | ....-|. -+|-.++..|.|..+.+-..=
T Consensus 65 ----n~~a~~vkvg~-----~~caYs~E~f~ee------------g----~~YtsH~--Wvtg~~~~sfeCSFTv~kg~~ 117 (153)
T PF12712_consen 65 ----NPSAKLVKVGN-----WECAYSKEMFQEE------------G----AYYTSHL--WVTGEGDVSFECSFTVPKGES 117 (153)
T ss_dssp -----TT-EEEEETT-----EEEEEEEEEEEET------------T----EEEEEEE--EEEEETTEEEEEEEEEETT--
T ss_pred ----CCCcceEEecc-----EEEEEEhhhhhcc------------C----eeEEEEE--EEEecCceEEEEEEEccCCCC
Confidence 22344544422 2234444443321 1 1122343 456778889988887764332
Q ss_pred hHhhHHHHHHhcceeeee
Q 025110 237 VEEENDLRQVIDSFRVNK 254 (257)
Q Consensus 237 ~k~~~~lr~vv~SFrv~~ 254 (257)
....+.|+.|..|.+
T Consensus 118 ---~~~aE~iiasL~vR~ 132 (153)
T PF12712_consen 118 ---VKEAEEIIASLEVRK 132 (153)
T ss_dssp ----HHHHHHHHH-EE--
T ss_pred ---cchHHHHHhhheehh
Confidence 334667788887765
No 12
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=81.27 E-value=23 Score=33.17 Aligned_cols=102 Identities=21% Similarity=0.336 Sum_probs=53.3
Q ss_pred eeeeCCCceEEeccCCceeeccC----CcceEEeCCCC--------C-CCcEEEEEeCCCCCCCCCcccCCChHHHHHHH
Q 025110 79 EYIDTFDGYSFKYPQNWIQVRGA----GADIFYRDPYV--------L-DENVSVELSSPSSSRYKSVEDLGPPKEAGRKV 145 (257)
Q Consensus 79 ~y~D~~dgY~f~yP~~W~~~~~~----G~dv~f~d~~~--------~-~~nVsV~isp~~~~~~~si~dlGspeeva~~l 145 (257)
++.|..-||+|.+|.||++.+-. |..+.-+-..+ . .+.-+|++..+..+-|.+.+ -+-...|.+|
T Consensus 111 rvdn~~gGFS~vvP~GW~~Sda~~L~yG~alls~~~~~~~~~~~~~p~andt~v~lgrld~kl~a~ae--~dn~kaa~rl 188 (297)
T PF07174_consen 111 RVDNAAGGFSYVVPAGWVESDASHLDYGSALLSKQTGEPPMPGQPPPVANDTSVVLGRLDLKLFASAE--PDNTKAAVRL 188 (297)
T ss_pred cccccccceEEeccCCccccccceeecceeeeccCCCCCCCCCCCCCcCCCceEEecccccccccccc--CChHHHHHHH
Confidence 45556789999999999987643 44333221111 1 12345555554221122221 1233577888
Q ss_pred HHHhhhhhhc---cccCCccceeEEeceeeeeCCC-eeEEEEEEEe
Q 025110 146 LRQYLTEFMS---TRLGVRRESNILSTSSRVADDG-RLYYLVEVNI 187 (257)
Q Consensus 146 ~~~~~~~~~s---tr~g~~~~a~ll~a~sr~~~dG-~~YY~~Ey~~ 187 (257)
..++-.-||- || .+++..-|++.- ..| --||+..|.=
T Consensus 189 ~sdmgeffmp~pg~r--inq~~~~l~~~g---~~g~asyyevkf~d 229 (297)
T PF07174_consen 189 ASDMGEFFMPYPGTR--INQETTPLDANG---MPGSASYYEVKFTD 229 (297)
T ss_pred hccccceeccCCCcc--ccccccccccCC---cccceeEEEEEecc
Confidence 7764333332 33 256777777632 233 4566665543
No 13
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=73.65 E-value=3.2 Score=24.96 Aligned_cols=16 Identities=13% Similarity=-0.014 Sum_probs=11.8
Q ss_pred cchHHHHHHHHHHhhh
Q 025110 45 VPRRNAMALILSSYIF 60 (257)
Q Consensus 45 ~~RR~~L~~~~~a~~~ 60 (257)
++||++|.+.+++.+.
T Consensus 2 ~sRR~fLk~~~a~~a~ 17 (26)
T PF10518_consen 2 LSRRQFLKGGAAAAAA 17 (26)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 6899999887654443
No 14
>COG4784 Putative Zn-dependent protease [General function prediction only]
Probab=55.64 E-value=23 Score=34.54 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=27.6
Q ss_pred EEEEEEE-ECCEEEEEEeecCcccchHhhHHHHHHhcceeeee
Q 025110 213 YLSVLGV-ENNRLYELRLQTPENVFVEEENDLRQVIDSFRVNK 254 (257)
Q Consensus 213 ~l~~~tv-~~gkLYtl~~qa~e~~W~k~~~~lr~vv~SFrv~~ 254 (257)
.+=++.+ .+++.|.|-.-.|...- ..++....+..|||.+.
T Consensus 375 ~fdvaVI~~g~rvyrfltavp~gs~-~l~~~a~sv~~SFR~lt 416 (479)
T COG4784 375 QFDVAVIRAGDRVYRFLTAVPKGST-ALEPRANSVRRSFRPLT 416 (479)
T ss_pred cceEEEEEeCCEEEEEEEecccCcc-hhhHHHHHHHhhcccCC
Confidence 3333333 46788888777765443 34568899999999864
No 15
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=47.02 E-value=28 Score=20.62 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=18.0
Q ss_pred EEEECCEEEEEEeecCcccch
Q 025110 217 LGVENNRLYELRLQTPENVFV 237 (257)
Q Consensus 217 ~tv~~gkLYtl~~qa~e~~W~ 237 (257)
++-.+|+||.+.....+.+|.
T Consensus 11 ~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 11 VGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEcCCCEEEEEEcccCcEEEE
Confidence 445689999999999999996
No 16
>PLN00058 photosystem II reaction center subunit T; Provisional
Probab=44.70 E-value=17 Score=28.90 Aligned_cols=23 Identities=17% Similarity=0.023 Sum_probs=16.1
Q ss_pred ccCcchHHHHHHHHHHhhhhccC
Q 025110 42 AFAVPRRNAMALILSSYIFSDFG 64 (257)
Q Consensus 42 ~~~~~RR~~L~~~~~a~~~s~~~ 64 (257)
+++.+||++|...+++++.+..+
T Consensus 46 e~~~gRR~~mfaaaAaav~s~a~ 68 (103)
T PLN00058 46 QSTTMRRDLMFTAAAAAVCSLAK 68 (103)
T ss_pred cchhhHHHHHHHHHHHHHHhhhH
Confidence 35678999999887666554433
No 17
>PF05757 PsbQ: Oxygen evolving enhancer protein 3 (PsbQ); InterPro: IPR008797 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbQ. Both PsbQ and PsbP (IPR002683 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. The crystal structure of PsbQ from spinach revealed a 4-helical bundle polypeptide. The distribution of positive and negative charges on the protein surface might explain the ability of PsbQ to increase the binding of chloride and calcium ions and make them available to PSII [].; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 1VYK_A 1NZE_A 3LS1_A 3LS0_A.
Probab=41.05 E-value=9.4 Score=34.04 Aligned_cols=32 Identities=16% Similarity=0.112 Sum_probs=0.0
Q ss_pred ccccceeccccccccc-cCcchHHHHHHHHHHh
Q 025110 27 QMKRKILSWPLLNLQA-FAVPRRNAMALILSSY 58 (257)
Q Consensus 27 ~~~~~~~~~~~~~~~~-~~~~RR~~L~~~~~a~ 58 (257)
..+|..+.|+++.... ...+||.+|.++++++
T Consensus 10 ~~~r~~~~vra~~~~~~~~~~RRa~l~~l~a~~ 42 (202)
T PF05757_consen 10 ASRRAGVVVRASQSPAQQQTSRRAVLGSLLAAA 42 (202)
T ss_dssp ---------------------------------
T ss_pred ccccccceeccccCcccccccHHHHHHHHHHHH
Confidence 3366667788776333 3567888877554433
No 18
>TIGR01409 TAT_signal_seq Tat (twin-arginine translocation) pathway signal sequence. Members with small amino acid side chains at the -1 and -3 positions from the C-terminus of the model should be predicted to be cleaved as are Sec pathway signal sequences. Members are almost exclusively bacterial, although archaeal sequences are also found. A large fraction of the members of this family may have bound redox-active cofactors.
Probab=31.61 E-value=43 Score=20.31 Aligned_cols=13 Identities=15% Similarity=0.250 Sum_probs=9.6
Q ss_pred cchHHHHHHHHHH
Q 025110 45 VPRRNAMALILSS 57 (257)
Q Consensus 45 ~~RR~~L~~~~~a 57 (257)
++||++|.....+
T Consensus 1 ~sRR~Flk~~~~~ 13 (29)
T TIGR01409 1 LSRRDFLKGAAAA 13 (29)
T ss_pred CchhhhHHHHHHH
Confidence 4799999876543
No 19
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=31.38 E-value=26 Score=29.77 Aligned_cols=20 Identities=40% Similarity=0.870 Sum_probs=16.5
Q ss_pred CCcccCCChHHHHHHHHHHh
Q 025110 130 KSVEDLGPPKEAGRKVLRQY 149 (257)
Q Consensus 130 ~si~dlGspeeva~~l~~~~ 149 (257)
.-+++||+|+++|+.+..+.
T Consensus 45 eii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 45 EIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHcCCHHHHHHHHHHhh
Confidence 44789999999999987754
No 20
>PF12318 FAD-SLDH: Membrane bound FAD containing D-sorbitol dehydrogenase ; InterPro: IPR024651 There are two types of membrane-bound D-sorbitol dehydrogenase: PQQ-SLDH (pyrroloquinoline quinone sorbitol dehydrogenase) and FAD-SLDH (FAD-containing sorbitol dehydrogenase). FAD-SLDH is involved in oxidation of D-sorbitol to L-sorbose and consists of a large, small and cytochrome c subunits []. This entry represents the small subunit of the FAD-containing D-sorbitol dehydrogenase. This family of proteins is found in bacteria and contains a conserved ALM sequence motif. The role of the small subunit is unknown. Gluconate dehydrogenases and fructose dehydrogenases are also included in this entry.
Probab=30.61 E-value=33 Score=29.42 Aligned_cols=8 Identities=25% Similarity=0.584 Sum_probs=6.6
Q ss_pred CcchHHHH
Q 025110 44 AVPRRNAM 51 (257)
Q Consensus 44 ~~~RR~~L 51 (257)
+++||++|
T Consensus 1 g~sRR~~L 8 (168)
T PF12318_consen 1 GLSRRRLL 8 (168)
T ss_pred CCcHHHHH
Confidence 36899999
No 21
>PLN00064 photosystem II protein Psb27; Provisional
Probab=26.23 E-value=50 Score=28.61 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=9.0
Q ss_pred cchHHHHHHHHH
Q 025110 45 VPRRNAMALILS 56 (257)
Q Consensus 45 ~~RR~~L~~~~~ 56 (257)
.+||++|..+.+
T Consensus 34 ~~rr~~~~~~~~ 45 (166)
T PLN00064 34 LLRREFLSLATT 45 (166)
T ss_pred hHHHHHHHHHHH
Confidence 479999986544
No 22
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=24.99 E-value=55 Score=23.98 Aligned_cols=12 Identities=17% Similarity=0.202 Sum_probs=9.3
Q ss_pred cCcchHHHHHHH
Q 025110 43 FAVPRRNAMALI 54 (257)
Q Consensus 43 ~~~~RR~~L~~~ 54 (257)
...+||++|.++
T Consensus 7 ~~~sRR~Flk~l 18 (66)
T TIGR02811 7 ADPSRRDLLKGL 18 (66)
T ss_pred CCccHHHHHHHH
Confidence 357899999864
No 23
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=23.31 E-value=64 Score=20.29 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=18.7
Q ss_pred EEEECCEEEEEEeecCcccchH
Q 025110 217 LGVENNRLYELRLQTPENVFVE 238 (257)
Q Consensus 217 ~tv~~gkLYtl~~qa~e~~W~k 238 (257)
++-.+|+||.|.+.+++..|..
T Consensus 5 ~~~~~g~l~AlD~~TG~~~W~~ 26 (38)
T PF01011_consen 5 VGTPDGYLYALDAKTGKVLWKF 26 (38)
T ss_dssp EETTTSEEEEEETTTTSEEEEE
T ss_pred EeCCCCEEEEEECCCCCEEEee
Confidence 3356899999999999999974
No 24
>PF09211 DUF1958: Domain of unknown function (DUF1958); InterPro: IPR015294 Penicillin-binding proteins are beta-lactam antibiotic-sensitive bacterial enzymes required for the growth and maintenance of the peptidoglycan layer of the bacterial cell wall that protects the cell from osmotic stress. Penicillin-binding protein 4 (PBP4) functions as a transpeptidase, and belongs to MEROPS peptidase family S11 (clan SE). PBP4 acts co-operatively with PBP2 in staphylococcal cell wall biosynthesis and susceptibility to antimicrobial agents []. This entry represents the C-terminal domain PBP4.; PDB: 1TVF_A 3HUN_A 3HUM_B.
Probab=21.98 E-value=78 Score=23.34 Aligned_cols=43 Identities=26% Similarity=0.420 Sum_probs=25.5
Q ss_pred eEEeceeeeeCCCeeEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEE
Q 025110 165 NILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYE 226 (257)
Q Consensus 165 ~ll~a~sr~~~dG~~YY~~Ey~~~s~~~~~~~~~~p~~~~~~~e~~RH~l~~~tv~~gkLYt 226 (257)
+||++.+-+ +||++||.= ..=++++|.| ... -.+.+.+|+|+.
T Consensus 3 KvLskG~h~-IdGk~y~v~---------kDlYd~VpK~------~~~---~~~~v~dg~v~v 45 (65)
T PF09211_consen 3 KVLSKGEHT-IDGKKYYVK---------KDLYDVVPKG------KKP---YKLKVKDGKVHV 45 (65)
T ss_dssp EEE-SEEEE-ETTEEEEES---------S-EEEEEETT--------G---SEEEEETTEEEE
T ss_pred ccccCccEE-ECCEEEEec---------CChhhhccCC------Ccc---ceEEEeCCEEEE
Confidence 689999988 999998731 1123334544 111 345677888776
No 25
>PF14202 TnpW: Transposon-encoded protein TnpW
Probab=21.25 E-value=1.6e+02 Score=19.03 Aligned_cols=29 Identities=10% Similarity=0.220 Sum_probs=25.5
Q ss_pred ECCEEEEEEeecCcccchHhhHHHHHHhc
Q 025110 220 ENNRLYELRLQTPENVFVEEENDLRQVID 248 (257)
Q Consensus 220 ~~gkLYtl~~qa~e~~W~k~~~~lr~vv~ 248 (257)
-+|..|.+.+-.++..=+.+++++.+++.
T Consensus 7 IG~Tty~V~~~F~~~s~et~~DKi~rli~ 35 (37)
T PF14202_consen 7 IGKTTYVVEVHFSETSKETMQDKIKRLIR 35 (37)
T ss_pred ECCEEEEEEEEECCCccccHHHHHHHHHh
Confidence 37899999999999999999999988864
No 26
>PF07009 DUF1312: Protein of unknown function (DUF1312); InterPro: IPR010739 This family consists of several bacterial proteins of around 120 residues in length. The function of this family is unknown.; PDB: 4ESN_B 1NPP_B 1M1G_D 1NPR_A 1M1H_A 2KPP_A 3LD7_C.
Probab=21.18 E-value=2.7e+02 Score=21.96 Aligned_cols=25 Identities=8% Similarity=0.402 Sum_probs=19.7
Q ss_pred EEEEEEECCEEEEEEeecCcccchH
Q 025110 214 LSVLGVENNRLYELRLQTPENVFVE 238 (257)
Q Consensus 214 l~~~tv~~gkLYtl~~qa~e~~W~k 238 (257)
...+-+.||+.+.....||++-=-+
T Consensus 60 ~~~i~i~~g~vrv~~s~CpdkiCv~ 84 (113)
T PF07009_consen 60 YNTIEIKDGKVRVIESDCPDKICVK 84 (113)
T ss_dssp EEEEEEETTEEEEEEESTSS-HHHH
T ss_pred EEEEEEECCEEEEEECCCCCcchhh
Confidence 4577899999999999999875433
No 27
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=21.12 E-value=1e+02 Score=29.36 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=10.3
Q ss_pred cchHHHHHHHHHHhh
Q 025110 45 VPRRNAMALILSSYI 59 (257)
Q Consensus 45 ~~RR~~L~~~~~a~~ 59 (257)
+.||.+|.+++++.+
T Consensus 1 ~~RR~fl~~~~~~~~ 15 (328)
T PRK10882 1 MNRRNFLKAASAGAL 15 (328)
T ss_pred CCHHHHHHHHHHHHH
Confidence 469999987654333
Done!