Query 025110
Match_columns 257
No_of_seqs 167 out of 315
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 03:56:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025110.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025110hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xb3_A PSBP protein; photosynt 100.0 5E-41 1.7E-45 282.9 18.9 161 73-253 4-165 (165)
2 1v2b_A 23-kDa polypeptide of p 100.0 7E-41 2.4E-45 287.2 12.8 160 73-252 5-176 (177)
3 2lnj_A SLL1418 protein, putati 100.0 1.2E-41 4.2E-46 289.1 0.0 158 72-253 9-170 (170)
4 1tu1_A Hypothetical protein PA 98.4 1.9E-05 6.4E-10 64.8 17.3 139 77-254 3-143 (148)
5 3lyd_A Uncharacterized protein 97.6 0.0037 1.2E-07 52.5 15.5 133 85-253 18-158 (161)
6 3hlz_A Uncharacterized protein 65.1 7.9 0.00027 34.2 4.9 42 79-120 6-47 (269)
7 2pq4_B Periplasmic nitrate red 43.6 18 0.00061 22.4 2.6 12 45-56 3-14 (35)
8 1ywi_A Formin-binding protein 31.1 25 0.00086 22.1 1.9 20 219-238 19-38 (41)
9 2ysi_A Transcription elongatio 29.8 15 0.00051 23.1 0.6 20 219-238 17-36 (40)
10 1e0l_A Formin binding protein; 24.7 19 0.00065 22.1 0.4 20 219-238 13-32 (37)
11 2jxw_A WW domain-binding prote 22.7 34 0.0012 24.1 1.5 21 218-238 52-72 (75)
12 2l5f_A PRE-mRNA-processing fac 21.8 23 0.00078 26.1 0.4 21 219-239 62-82 (92)
13 1e0n_A Hypothetical protein; Y 20.2 22 0.00074 20.6 -0.0 19 220-238 8-26 (27)
No 1
>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}
Probab=100.00 E-value=5e-41 Score=282.94 Aligned_cols=161 Identities=31% Similarity=0.630 Sum_probs=144.6
Q ss_pred cccCceeeeeCCCceEEeccCCceeeccC-CcceEEeCCCCCCCcEEEEEeCCCCCCCCCcccCCChHHHHHHHHHHhhh
Q 025110 73 QSVGFREYIDTFDGYSFKYPQNWIQVRGA-GADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLT 151 (257)
Q Consensus 73 ~~~gf~~y~D~~dgY~f~yP~~W~~~~~~-G~dv~f~d~~~~~~nVsV~isp~~~~~~~si~dlGspeeva~~l~~~~~~ 151 (257)
.+.||++|.|+.+||+|.||++|+++.++ |++++|+||.+..+||+|+|+|++ ++++|++||+|++|+++|+++.++
T Consensus 4 ~~~g~~~~~D~~~gysf~~P~~W~~~~~~~g~~v~f~d~~~~~~~v~V~v~p~~--~~~~l~~~G~~e~va~~l~~~~~~ 81 (165)
T 2xb3_A 4 ATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVA--STKSLEELGSPEEVGDRLLRNIIA 81 (165)
T ss_dssp --CCEEEEEETTTTEEEEEETTEEEECCCTTEEEEEEESSCTTSEEEEEEEECS--SCCCSGGGCCHHHHHHHHHHHTTS
T ss_pred CCCCceEEEcCCCCEEEEcCCCCeEecCCCCceEEEECcccCCceEEEEEecCC--CCCChHHcCCHHHHHHHHHHHhhc
Confidence 46799999999999999999999999998 999999999998999999999985 379999999999999999998877
Q ss_pred hhhccccCCccceeEEeceeeeeCCCeeEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEEEEeec
Q 025110 152 EFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQT 231 (257)
Q Consensus 152 ~~~str~g~~~~a~ll~a~sr~~~dG~~YY~~Ey~~~s~~~~~~~~~~p~~~~~~~e~~RH~l~~~tv~~gkLYtl~~qa 231 (257)
+ +++++.++|+++++++ .||++||+|||.+++ |+++. +++.||+|+++++++||||+|++|+
T Consensus 82 ~-----~~~~~~~~l~~a~~r~-~~G~~yY~~Ey~~~~----------~~~~~--~~~~rh~l~~~~v~~g~lY~l~~sa 143 (165)
T 2xb3_A 82 P-----SESGRSSALIAATSQK-ADDKTYYILEYAVTL----------PGDGN--TAQQRHNLSSIAVSRGKVYTLSVSA 143 (165)
T ss_dssp C-----TTSSCEEEEEEEEEEE-ETTEEEEEEEEEEEC----------C-------CCEEEEEEEEEEETTEEEEEEEEE
T ss_pred C-----CCCCcceEEEEeeeee-cCCceEEEEEEEEec----------CCCcc--CccccEEEEEEEEECCEEEEEEEec
Confidence 5 3668899999999997 899999999999987 54211 3589999999999999999999999
Q ss_pred CcccchHhhHHHHHHhcceeee
Q 025110 232 PENVFVEEENDLRQVIDSFRVN 253 (257)
Q Consensus 232 ~e~~W~k~~~~lr~vv~SFrv~ 253 (257)
||++|+++++.|++|++||+++
T Consensus 144 pe~~w~~~~~~l~~v~~SF~v~ 165 (165)
T 2xb3_A 144 PEERWPKVEDQFKTIVSSFTVY 165 (165)
T ss_dssp EGGGHHHHHHHHHHHHHTCEEC
T ss_pred CHHHhHHHHHHHHHHHhhEEeC
Confidence 9999999999999999999985
No 2
>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2
Probab=100.00 E-value=7e-41 Score=287.22 Aligned_cols=160 Identities=21% Similarity=0.355 Sum_probs=129.4
Q ss_pred cccCceeeeeCCCceEEeccCCceeec---cCCcceEEeCCCCCCCcEEEEEeCCCCCCCCCcccCCChHH----HHHHH
Q 025110 73 QSVGFREYIDTFDGYSFKYPQNWIQVR---GAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKE----AGRKV 145 (257)
Q Consensus 73 ~~~gf~~y~D~~dgY~f~yP~~W~~~~---~~G~dv~f~d~~~~~~nVsV~isp~~~~~~~si~dlGspee----va~~l 145 (257)
++.||++|. .+||+|+||.+|++++ .+|+|++|+|+++..+||+|+|+|++ .++|+|||+|++ |++.|
T Consensus 5 ~~~g~~~y~--~~gysf~yP~~W~~~~~~~~~G~~~~f~d~~~~~~nvsV~v~p~~---~~si~dlGspe~~~~~v~~~l 79 (177)
T 1v2b_A 5 TDTDFQTYN--GDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTD---KKSITDFGSPEQFLSQVDYLL 79 (177)
T ss_dssp --CCEEEEE--CSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECS---CSSGGGGCSHHHHHHHTGGGC
T ss_pred CCCCceEEe--cCCEEEEcCCCCcccccccCCCceEEEeCCcCCCccEEEEEeCCC---CCChhHCCCHHHHHHHHHHHH
Confidence 568999997 8999999999999765 45999999999999999999999973 589999999999 56677
Q ss_pred HHHhhhhh-hcc---ccCCccceeEEeceeeeeCCCeeEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEEC
Q 025110 146 LRQYLTEF-MST---RLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVEN 221 (257)
Q Consensus 146 ~~~~~~~~-~st---r~g~~~~a~ll~a~sr~~~dG~~YY~~Ey~~~s~~~~~~~~~~p~~~~~~~e~~RH~l~~~tv~~ 221 (257)
+++++.+. ++. .++++++++||++++|+ .||++||+|||.+++ |++ +|+.||+|++++|+|
T Consensus 80 ~~~~~~~~~~~~~gf~~~~~~~a~ll~a~~r~-~~G~~YY~~E~~~~~----------~~g----~e~~rH~l~~~tv~~ 144 (177)
T 1v2b_A 80 GRQAYSGKTDSEGGFESDAVAIANVLETSTAE-VGGKQYYYLSILTRT----------ADG----NEGGKHQLVTATVND 144 (177)
T ss_dssp ------------------CCCEEEEEEEEEEE-ETTEEEEEEEEEEEC-------------------CCEEEEEEEEEET
T ss_pred HHHhhcccccccCCcccCcccceEEEEeEEEE-eCCeEEEEEEEEEec----------CCC----CccccEEEEEEEEEC
Confidence 77777641 110 13456899999999999 699999999999997 654 568999999999999
Q ss_pred CEEEEEEeecCcccchHh-hHHHHHHhcceee
Q 025110 222 NRLYELRLQTPENVFVEE-ENDLRQVIDSFRV 252 (257)
Q Consensus 222 gkLYtl~~qa~e~~W~k~-~~~lr~vv~SFrv 252 (257)
||||+|++|++|++|++. ++.|++|++||+|
T Consensus 145 gkLY~l~~~a~e~~W~k~~~~~l~~v~~SF~v 176 (177)
T 1v2b_A 145 GKLYICKAQAGDKRWFKGAKKFVENTATSFSL 176 (177)
T ss_dssp TEEEEEEEEEEGGGCSTTTTHHHHHHHHTCEE
T ss_pred CEEEEEEEecCHHHhhhhHHHHHHHHHhheec
Confidence 999999999999999995 9999999999998
No 3
>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}
Probab=100.00 E-value=1.2e-41 Score=289.06 Aligned_cols=158 Identities=28% Similarity=0.484 Sum_probs=146.4
Q ss_pred ccccCceeeeeCCCceEEeccCCceeeccC----CcceEEeCCCCCCCcEEEEEeCCCCCCCCCcccCCChHHHHHHHHH
Q 025110 72 QQSVGFREYIDTFDGYSFKYPQNWIQVRGA----GADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLR 147 (257)
Q Consensus 72 e~~~gf~~y~D~~dgY~f~yP~~W~~~~~~----G~dv~f~d~~~~~~nVsV~isp~~~~~~~si~dlGspeeva~~l~~ 147 (257)
+.+.||++|.|+.|||+|+||++|++++++ |+|++|+||.+..+||+|+|+|++ +.++|+|||+|++|+++|++
T Consensus 9 ~~~~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~--~~~si~d~G~pe~va~~l~~ 86 (170)
T 2lnj_A 9 VGIASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIP--SDKTLTDLGTATDVGYRFMK 86 (170)
Confidence 457899999999999999999999998887 999999999999999999999985 36999999999999999999
Q ss_pred HhhhhhhccccCCccceeEEeceeeeeCCCeeEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEEE
Q 025110 148 QYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYEL 227 (257)
Q Consensus 148 ~~~~~~~str~g~~~~a~ll~a~sr~~~dG~~YY~~Ey~~~s~~~~~~~~~~p~~~~~~~e~~RH~l~~~tv~~gkLYtl 227 (257)
+++++ +++++.++||++++++ .||++||+|||.+++ |+ ++.||+|+++++++|+||+|
T Consensus 87 ~~~~~-----~~~~~~a~li~a~~~~-~~G~~yY~~Ey~~~~----------~~------~~~rh~l~~~~v~~gklY~l 144 (170)
T 2lnj_A 87 TVNDA-----SQGDRQAELINAEARD-EDGQVYYTLEYRVLV----------GD------NVERHDLASVTTNRGKLITF 144 (170)
Confidence 98876 3678899999999997 899999999999987 53 37999999999999999999
Q ss_pred EeecCcccchHhhHHHHHHhcceeee
Q 025110 228 RLQTPENVFVEEENDLRQVIDSFRVN 253 (257)
Q Consensus 228 ~~qa~e~~W~k~~~~lr~vv~SFrv~ 253 (257)
++|+||++|+++++.|++|++||+|+
T Consensus 145 ~~~ape~~w~~~~~~l~~v~~SF~v~ 170 (170)
T 2lnj_A 145 DLSTAEDRWDTVKSLFDTVASSFHVY 170 (170)
Confidence 99999999999999999999999985
No 4
>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3
Probab=98.43 E-value=1.9e-05 Score=64.77 Aligned_cols=139 Identities=11% Similarity=0.075 Sum_probs=92.8
Q ss_pred ceeeeeCCCceEEeccCCceeeccCCcceEEeCCCCCC--CcEEEEEeCCCCCCCCCcccCCChHHHHHHHHHHhhhhhh
Q 025110 77 FREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLD--ENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFM 154 (257)
Q Consensus 77 f~~y~D~~dgY~f~yP~~W~~~~~~G~dv~f~d~~~~~--~nVsV~isp~~~~~~~si~dlGspeeva~~l~~~~~~~~~ 154 (257)
+..|. .+.++|.+|.+|.... ..|++-...... -|+.|...+++. . .+.++..++-+++....
T Consensus 3 m~~y~--~~Egsl~lP~gw~D~t---~nv~~~~~~~~~g~~~lvIsR~~~~~--~------~~l~~~~~~q~~~l~~~-- 67 (148)
T 1tu1_A 3 MTLYR--LHEADLEIPDAWQDQS---INIFKLPASGPAREASFVISRDASQG--D------APFADYVARQLENAEKQ-- 67 (148)
T ss_dssp EEEEE--CSSEEEEEETTSEECC---BEEEEECCBTTBCCEEEEEEEECCCT--T------SCHHHHHHHHHHHHHHH--
T ss_pred CceEE--ECCEEEeCCCCcEeee---EEEEEcCCCCCCCceEEEEEeccCCC--C------CCHHHHHHHHHHHHHhh--
Confidence 56675 8999999999999443 234443322212 366666665532 1 34455544443332211
Q ss_pred ccccCCccceeEEeceeeeeCCCeeEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEEEEeecCcc
Q 025110 155 STRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPEN 234 (257)
Q Consensus 155 str~g~~~~a~ll~a~sr~~~dG~~YY~~Ey~~~s~~~~~~~~~~p~~~~~~~e~~RH~l~~~tv~~gkLYtl~~qa~e~ 234 (257)
...-+++.....+ .+|.+--.+||.-.. . ...+|.+-++.+..+++|.|+.+++..
T Consensus 68 ------l~~y~~~~~~~~~-l~g~~a~~~e~~~~~----------~-------g~~~~Q~q~~~~~~~~~l~~t~t~~~~ 123 (148)
T 1tu1_A 68 ------LPGFKLHKRWDIN-IHGHAAVLLDYQWQR----------E-------GRDLMLRQVFIERRPAVLITTLTTTPA 123 (148)
T ss_dssp ------STTCEEEEEEEEE-ETTEEEEEEEEEEEE----------T-------TEEEEEEEEEECCSSSEEEEEEEECGG
T ss_pred ------CcCcEEeeeEeEE-EcCCcEEEEEEEEcc----------C-------CEEEEEEEEEEEECCeEEEEEEEcCCC
Confidence 1123344333333 478888888888765 2 357999999999877999999999999
Q ss_pred cchHhhHHHHHHhcceeeee
Q 025110 235 VFVEEENDLRQVIDSFRVNK 254 (257)
Q Consensus 235 ~W~k~~~~lr~vv~SFrv~~ 254 (257)
.|+..++.++.|++||++..
T Consensus 124 ~~~~~~~~~~~i~~Sf~~~~ 143 (148)
T 1tu1_A 124 DLPHHEPAWKQAMQTLVPRP 143 (148)
T ss_dssp GHHHHHHHHHHHHHTCEECC
T ss_pred CCHHHHHHHHHHHHhcccCC
Confidence 99999999999999999754
No 5
>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}
Probab=97.56 E-value=0.0037 Score=52.45 Aligned_cols=133 Identities=12% Similarity=0.091 Sum_probs=85.6
Q ss_pred CceEEeccCCceeeccCCcceEEeCCC---CCCCcEEEEEeCCCCCCCCCcccCCChHHHHHHHHHHhhhhhhccccCCc
Q 025110 85 DGYSFKYPQNWIQVRGAGADIFYRDPY---VLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVR 161 (257)
Q Consensus 85 dgY~f~yP~~W~~~~~~G~dv~f~d~~---~~~~nVsV~isp~~~~~~~si~dlGspeeva~~l~~~~~~~~~str~g~~ 161 (257)
-++++-.|.||......|.-+...+.. .-.-|+-|++.-... |+ -|+.... +.++.+. -
T Consensus 18 p~~~v~~P~gWe~~~~~~~~~~~~~~~~~~~F~pN~vVtv~r~~~-------~~--~e~~r~e-l~~~~~~--------l 79 (161)
T 3lyd_A 18 TGFTVPIPETWQPDPTMGTQFAARPHTPPQGFTPNIIGTVRRAAT-------GA--LHNQRTE-LDQRATQ--------L 79 (161)
T ss_dssp CEEEEECCTTEEECTTSSSSEEEEESSCCSSSCCEEEEEEEEECT-------TH--HHHHHHH-HHHHHTT--------S
T ss_pred ceeeccCCCCceEcCCCCceEEeccCCCCCCccccEEEEEEecCc-------HH--HHHHHHH-HHHHHhh--------C
Confidence 578999999999987666533333222 124588888887643 22 2332222 2332221 1
Q ss_pred cceeEEeceeeeeCCCeeEEEEEEEeeccccccccccCCcccccccccceE---EEEEEEEECCEEEEE--EeecCcccc
Q 025110 162 RESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRR---YLSVLGVENNRLYEL--RLQTPENVF 236 (257)
Q Consensus 162 ~~a~ll~a~sr~~~dG~~YY~~Ey~~~s~~~~~~~~~~p~~~~~~~e~~RH---~l~~~tv~~gkLYtl--~~qa~e~~W 236 (257)
..-++++-...+ .+|.+-|..||.-.. |+ .+.+ ...++...++..|.+ ++++.+.+-
T Consensus 80 p~~~~~~r~~~~-~~G~pa~~iey~y~~----------~~-------~g~~aq~~~~vvve~~~v~~vv~lt~T~~~~q~ 141 (161)
T 3lyd_A 80 PDYAERGRTETT-VDGFPAYHIEYAYRH----------HG-------TITIAQMITLVEVSHPHAVDIIQLTATCAGDQT 141 (161)
T ss_dssp TTCEEEEEEEEE-ETTEEEEEEEEEEEE----------TT-------TEEEEEEEEEEEEECSSCEEEEEEEEEEEGGGH
T ss_pred CCcEeecccccc-cCCcccEEEEEEEec----------CC-------CceEeeEEEEEEEecCCEEEEEEEEEEeccccc
Confidence 123344433344 799999999999644 33 3444 233444446766666 999999999
Q ss_pred hHhhHHHHHHhcceeee
Q 025110 237 VEEENDLRQVIDSFRVN 253 (257)
Q Consensus 237 ~k~~~~lr~vv~SFrv~ 253 (257)
+...+.++.|++||++.
T Consensus 142 ~~~~~d~q~iv~sl~v~ 158 (161)
T 3lyd_A 142 ADYWDTFRLMHADLTVQ 158 (161)
T ss_dssp HHHHHHHHHHHHTCEEE
T ss_pred hHHHHHHHHHhheeEec
Confidence 99999999999999986
No 6
>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=65.08 E-value=7.9 Score=34.24 Aligned_cols=42 Identities=19% Similarity=0.521 Sum_probs=31.6
Q ss_pred eeeeCCCceEEeccCCceeeccCCcceEEeCCCCCCCcEEEE
Q 025110 79 EYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVE 120 (257)
Q Consensus 79 ~y~D~~dgY~f~yP~~W~~~~~~G~dv~f~d~~~~~~nVsV~ 120 (257)
-|..++-=|++.||.+|.+.+...-.-.|.||..=.+|.-+.
T Consensus 6 k~ISPgaWfs~~yP~~W~EfEd~E~sflFynp~~WtGNfRIS 47 (269)
T 3hlz_A 6 KFISPGAWFSMNYPSDWNEFEDGEGSFLFYNPDVWTGNFRIS 47 (269)
T ss_dssp EEECGGGCEEEEECTTCEEECCCTTEEEEECSSSCCCEEEEE
T ss_pred eeecCCceeEEecCCCcccccCCCCceeeeChhhcccceEEE
Confidence 466677779999999999986532334689998878887644
No 7
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=43.56 E-value=18 Score=22.41 Aligned_cols=12 Identities=25% Similarity=0.221 Sum_probs=9.4
Q ss_pred cchHHHHHHHHH
Q 025110 45 VPRRNAMALILS 56 (257)
Q Consensus 45 ~~RR~~L~~~~~ 56 (257)
++||++|-+.++
T Consensus 3 lsRR~FLK~~aa 14 (35)
T 2pq4_B 3 LSRRSFMKANAV 14 (35)
T ss_dssp CCSHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 689999987544
No 8
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=31.11 E-value=25 Score=22.15 Aligned_cols=20 Identities=15% Similarity=0.297 Sum_probs=18.1
Q ss_pred EECCEEEEEEeecCcccchH
Q 025110 219 VENNRLYELRLQTPENVFVE 238 (257)
Q Consensus 219 v~~gkLYtl~~qa~e~~W~k 238 (257)
..+|+.|-.|..+.+.+|++
T Consensus 19 ~~~G~~YYyN~~T~eS~We~ 38 (41)
T 1ywi_A 19 SPDGRTYYYNTETKQSTWEK 38 (41)
T ss_dssp ETTTEEEEEETTTTEEEESC
T ss_pred CCCCCEEEEECCCCCEEeCC
Confidence 45899999999999999986
No 9
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=29.77 E-value=15 Score=23.14 Aligned_cols=20 Identities=15% Similarity=0.390 Sum_probs=18.3
Q ss_pred EECCEEEEEEeecCcccchH
Q 025110 219 VENNRLYELRLQTPENVFVE 238 (257)
Q Consensus 219 v~~gkLYtl~~qa~e~~W~k 238 (257)
..+|+.|-.|..+.+.+|++
T Consensus 17 ~~~G~~YYyN~~T~eS~We~ 36 (40)
T 2ysi_A 17 TPDGKVYYYNARTRESAWTK 36 (40)
T ss_dssp CTTSCEEEEETTTCCEESSC
T ss_pred CCCCCEEEEECCCCCEEeCC
Confidence 57899999999999999986
No 10
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=24.71 E-value=19 Score=22.13 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=17.9
Q ss_pred EECCEEEEEEeecCcccchH
Q 025110 219 VENNRLYELRLQTPENVFVE 238 (257)
Q Consensus 219 v~~gkLYtl~~qa~e~~W~k 238 (257)
..+|+.|-.|..+.+.+|++
T Consensus 13 ~~~G~~YYyN~~T~es~We~ 32 (37)
T 1e0l_A 13 TADGKTYYYNNRTLESTWEK 32 (37)
T ss_dssp CTTSCEEEEETTTTEEESSC
T ss_pred CCCCCEEEEECCCCCEEecC
Confidence 46799999999999999986
No 11
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=22.74 E-value=34 Score=24.07 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=18.0
Q ss_pred EEECCEEEEEEeecCcccchH
Q 025110 218 GVENNRLYELRLQTPENVFVE 238 (257)
Q Consensus 218 tv~~gkLYtl~~qa~e~~W~k 238 (257)
.-.+|+.|-.+..+.+.+|++
T Consensus 52 ~~~~Gr~YyyN~~T~~s~We~ 72 (75)
T 2jxw_A 52 LSEDGFTYYYNTETGESRWEK 72 (75)
T ss_dssp EETTTEEEEEETTTTEEESSC
T ss_pred ECCCCCEEEEECcCCCEeccC
Confidence 445899999999999999975
No 12
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=21.82 E-value=23 Score=26.11 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=18.4
Q ss_pred EECCEEEEEEeecCcccchHh
Q 025110 219 VENNRLYELRLQTPENVFVEE 239 (257)
Q Consensus 219 v~~gkLYtl~~qa~e~~W~k~ 239 (257)
-.+|+.|-.+..+.+.+|++=
T Consensus 62 ~~~Gr~Yy~N~~T~~s~We~P 82 (92)
T 2l5f_A 62 SDSGKTYYYNSQTKESRWAKP 82 (92)
T ss_dssp CTTCCEEEEETTTTEEESCCC
T ss_pred CCCCCEEEEECCCCCeeccCc
Confidence 458999999999999999863
No 13
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=20.21 E-value=22 Score=20.60 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=16.6
Q ss_pred ECCEEEEEEeecCcccchH
Q 025110 220 ENNRLYELRLQTPENVFVE 238 (257)
Q Consensus 220 ~~gkLYtl~~qa~e~~W~k 238 (257)
..|+.|-+|..+.+.+|+.
T Consensus 8 ~~g~~YYyN~~T~~s~We~ 26 (27)
T 1e0n_A 8 ENGRPLYYNAEQKTKLHYP 26 (27)
T ss_dssp SSSSEEEEETTTTEEESSC
T ss_pred CCCCeEEEECCCCCEeccC
Confidence 4688999999999999963
Done!