Query 025111
Match_columns 257
No_of_seqs 234 out of 925
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 03:57:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025111.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025111hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5e_D 60S ribosomal protein L 100.0 4E-108 1E-112 751.0 21.6 251 1-251 1-296 (297)
2 4a17_M RPL5, 60S ribosomal pro 100.0 6E-107 2E-111 743.8 18.0 250 1-250 1-300 (301)
3 2zkr_n 60S ribosomal protein L 100.0 6E-108 2E-112 749.5 8.9 256 1-257 1-296 (297)
4 3iz5_Q 60S ribosomal protein L 100.0 1E-106 4E-111 742.3 -12.8 249 1-252 5-292 (304)
5 3j21_O 50S ribosomal protein L 100.0 2.7E-73 9.2E-78 499.8 3.7 181 11-212 2-197 (203)
6 1vq8_N 50S ribosomal protein L 100.0 1.2E-66 4.2E-71 452.8 11.5 170 11-212 2-185 (187)
7 3r8s_O 50S ribosomal protein L 100.0 1.3E-29 4.6E-34 205.6 7.1 97 28-132 7-115 (116)
8 1ovy_A 50S ribosomal protein L 100.0 6.7E-29 2.3E-33 202.7 7.4 100 25-133 9-120 (120)
9 3v2d_S 50S ribosomal protein L 99.9 2.4E-27 8.2E-32 191.5 9.8 95 25-132 5-111 (112)
10 2zjr_L 50S ribosomal protein L 99.9 3.7E-27 1.3E-31 190.9 1.0 95 27-133 6-114 (114)
11 3bbo_Q Ribosomal protein L18; 99.9 4.6E-26 1.6E-30 193.9 2.6 101 24-132 45-160 (161)
12 4gmn_B 60S ribosomal protein L 99.9 5.3E-25 1.8E-29 152.1 1.3 42 1-42 1-42 (49)
13 2vqe_K 30S ribosomal protein S 95.7 0.035 1.2E-06 45.4 7.6 91 46-142 14-123 (129)
14 3j20_M 30S ribosomal protein S 95.4 0.041 1.4E-06 45.5 7.1 91 48-143 14-131 (137)
15 3r8n_K 30S ribosomal protein S 94.6 0.062 2.1E-06 43.1 5.9 91 46-142 4-113 (117)
16 3bbn_K Ribosomal protein S11; 94.3 0.046 1.6E-06 45.3 4.8 91 46-142 27-136 (140)
17 2xzm_K RPS14E; ribosome, trans 90.2 0.3 1E-05 41.0 4.5 90 48-142 28-144 (151)
18 3u5c_O RP59A, 40S ribosomal pr 89.8 0.24 8.1E-06 40.9 3.6 88 48-142 14-130 (137)
19 1w53_A Phosphoserine phosphata 44.9 32 0.0011 25.9 4.7 45 164-210 15-61 (84)
20 2r80_A Hemoglobin subunit alph 43.8 30 0.001 27.0 4.7 72 134-210 37-112 (141)
21 2j6y_A Phosphoserine phosphata 42.6 32 0.0011 27.3 4.6 39 172-212 20-61 (111)
22 4hyz_A Uncharacterized protein 40.9 35 0.0012 26.2 4.6 51 149-205 10-60 (114)
23 2ke4_A CDC42-interacting prote 39.5 18 0.00063 27.8 2.7 25 231-255 10-34 (98)
24 3ra3_A P1C; coiled coil domain 38.0 27 0.00091 21.0 2.6 16 234-249 12-27 (28)
25 2xrh_A Protein HP0721; unknown 37.2 39 0.0013 26.4 4.2 42 168-209 42-86 (100)
26 1jeb_A Hemoglobin zeta chain; 37.0 42 0.0014 25.9 4.5 71 134-209 38-112 (142)
27 2w72_C Human hemoglobin A; iro 35.2 46 0.0016 25.7 4.5 72 134-210 37-112 (141)
28 1y6z_A Heat shock protein, put 32.1 12 0.0004 33.7 0.5 72 118-195 92-166 (263)
29 2gq0_A Chaperone protein HTPG; 31.7 15 0.00053 33.7 1.3 36 160-195 124-162 (303)
30 2zs0_A Extracellular giant hem 29.1 78 0.0027 24.4 4.9 72 134-209 40-117 (140)
31 1y4s_A Chaperone protein HTPG; 29.0 31 0.0011 34.0 3.0 47 160-208 352-401 (559)
32 3ubc_A Hemoglobin-like flavopr 26.3 97 0.0033 23.3 4.9 65 134-209 36-104 (131)
33 3d1k_A Hemoglobin subunit alph 26.3 87 0.003 24.2 4.7 72 134-210 37-113 (142)
34 2zs0_C Extracellular giant hem 26.2 86 0.0029 24.4 4.7 72 134-209 44-122 (147)
35 1x9f_D Globin C, hemoglobin ch 25.4 1E+02 0.0035 23.6 5.0 72 134-209 40-117 (140)
36 1wmu_A Hemoglobin D alpha chai 24.7 78 0.0027 24.4 4.1 71 134-209 37-111 (141)
37 3pry_A Heat shock protein HSP 23.7 31 0.001 31.1 1.7 34 160-194 126-162 (268)
38 3bom_A Hemoglobin subunit alph 23.2 94 0.0032 24.1 4.4 72 134-210 38-114 (143)
39 2zs0_B Extracellular giant hem 22.6 1.5E+02 0.0053 22.6 5.5 72 134-209 40-117 (142)
40 1x9f_A Globin IV, extracellula 22.2 1E+02 0.0036 24.1 4.5 71 134-209 47-125 (151)
41 1yhu_D Hemoglobin B2 chain; gl 22.2 1.4E+02 0.0046 23.2 5.1 72 134-209 44-122 (149)
42 1gcv_B Hemoglobin; oxygen stor 21.9 88 0.003 24.3 4.0 69 134-209 36-106 (136)
43 1c7c_A Protein (deoxyhemoglobi 21.7 92 0.0032 27.0 4.4 72 134-210 37-112 (283)
44 1c7c_A Protein (deoxyhemoglobi 20.3 1E+02 0.0036 26.6 4.5 72 134-210 179-254 (283)
No 1
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E
Probab=100.00 E-value=4.2e-108 Score=750.99 Aligned_cols=251 Identities=55% Similarity=0.925 Sum_probs=240.1
Q ss_pred CcceeeecCccccccccccchhhccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEec
Q 025111 1 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYA 80 (257)
Q Consensus 1 m~fvk~~kn~ay~~ryqvk~rRRregkTdY~~R~rli~~~knkyns~kpRLvVr~Snr~I~aQIi~~~~~GD~tlasAsS 80 (257)
|||||||||+|||+||||||||||||||||++|++||+||||||||++||||||+||+|||||||++.++||+|||||||
T Consensus 1 m~fvkvvknkaYf~ryqvkfRRRReGKTdY~~R~rLi~qdknKynt~kpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS 80 (297)
T 3u5e_D 1 MAFQKDAKSSAYSSRFQTPFRRRREGKTDYYQRKRLVTQHKAKYNTPKYRLVVRFTNKDIICQIISSTITGDVVLAAAYS 80 (297)
T ss_dssp -CCTTSCCCHHHHHTCCCCCSTTTTTCCCHHHHHHHHCCCGGGTTCCCCEEEEEEETTEEEEEEEECCTTCCEEEEEEEG
T ss_pred CCceeeeeccccccccccchhhhccccccHHHHHHHHHccccccCCCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred ccccccccccCCccHHHHHHHHHHHHHHHHHhcCCCcccccccc------------------------------------
Q 025111 81 HELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVE------------------------------------ 124 (257)
Q Consensus 81 ~el~k~g~k~~~~N~~AAy~tG~LlA~ral~k~Gl~~~YhG~vk------------------------------------ 124 (257)
+||+.+||+++++|++|||+||+|||+|||+++||+..|.|..+
T Consensus 81 ~El~k~g~k~~~~N~~AAy~vG~LiAeRAl~k~~ld~~y~G~~e~~g~~~~ve~~~~~~~~f~~~LDvGl~rtttG~RVf 160 (297)
T 3u5e_D 81 HELPRYGITHGLTNWAAAYATGLLIARRTLQKLGLDETYKGVEEVEGEYELTEAVEDGPRPFKVFLDIGLQRTTTGARVF 160 (297)
T ss_dssp GGGGGGTCCSCTTSHHHHHHHHHHHHHHHHHHTSTTSSCCCCSSCCCCCCCCCCCSSSCCCCBCEEECTTCCCCTTCSHH
T ss_pred cchhhcccCCCCCcHHHHHHHHHHHHHHHHHhhCCcccccCccccccceeccccccCCCCceeEEEecCCCccCccceeh
Confidence 99999999999999999999999999999999999999987542
Q ss_pred ----ccccccccccCCCCccCCcCCCCCCCCHHhhhcccccccHHHHHHhhcccChHHHHhhHHHHHHcCCCcchHHHHH
Q 025111 125 ----GALDGGLDIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALY 200 (257)
Q Consensus 125 ----GArD~GL~IPhs~~~fp~~~~~~k~~~ae~~~~rI~G~hVa~Ym~~L~eed~e~ykkqFS~yik~gi~p~~~e~~y 200 (257)
||+||||+||||+++|||||.|+++||||+|++||+|+|||+||++|+|||||+|++|||+||++||+||+||+||
T Consensus 161 aalKGA~DgGL~IPhs~~~fpg~d~e~k~~~ae~~~~~I~G~hVa~Ym~~L~eedee~yk~qFs~yik~~i~~~~~e~~y 240 (297)
T 3u5e_D 161 GALKGASDGGLYVPHSENRFPGWDFETEEIDPELLRSYIFGGHVSQYMEELADDDEERFSELFKGYLADDIDADSLEDIY 240 (297)
T ss_dssp HHHHHHHHHTCBCCCCSTTSSSEETTTTEECHHHHHHHHTTHHHHHHHHHTTTTCHHHHHHTTHHHHHTTCCGGGHHHHH
T ss_pred hhhhcccccCcccCCCcccccCccccccccCHHHHHHHhcCccHHHHHHHHhhhCHHHHHHHHHHHHHcCCChhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCc-----ccccccCCCCCCHHHHHHHHHHHHHHHhhh
Q 025111 201 KKVHAAIRADPTMKKSEKPAP-----KEHKRYNLKKLTYEERKAKLVERLNALNSA 251 (257)
Q Consensus 201 ~~~~~~I~~~P~~~k~~k~~~-----~~~k~~~~~Klt~~qrk~rv~~K~~~~~~~ 251 (257)
++||++||+||++++++++.+ ..+|+||++|||++||++||+||+++|.+.
T Consensus 241 ~~~h~~Ir~~P~~~k~~~~k~~~~~~~~~k~~~~~klt~~qrk~~v~~k~~~~~~~ 296 (297)
T 3u5e_D 241 TSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAALAGQ 296 (297)
T ss_dssp HHHHHHHHHCCSCCCCCCSSCHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhCcccccccccccccccchhccccCcccCCHHHHHHHHHHHHHHHhhc
Confidence 999999999999887766532 467899999999999999999999999864
No 2
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M
Probab=100.00 E-value=6.1e-107 Score=743.78 Aligned_cols=250 Identities=50% Similarity=0.804 Sum_probs=239.8
Q ss_pred CcceeeecCccccccccccchhhccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEec
Q 025111 1 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYA 80 (257)
Q Consensus 1 m~fvk~~kn~ay~~ryqvk~rRRregkTdY~~R~rli~~~knkyns~kpRLvVr~Snr~I~aQIi~~~~~GD~tlasAsS 80 (257)
|||||||||+|||+||||||||||||||||++|++||+|||||||+|+||||||+||+|||||||++.++||+|||||||
T Consensus 1 m~fvkvvknkaYf~ryqvkfRRRReGKTdY~~R~rlv~qdknKynspkpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS 80 (301)
T 4a17_M 1 MGFVKVLKTKAYFKRFQTKYRRRREGLTDYYARKRLIIQDKDKYNTPKYRLVARATNTRIIAQIVYATLKCDRVLCAADS 80 (301)
T ss_dssp -CCCCCCSCHHHHHHCCCCCHHHHTTCCCHHHHHHHHCCCTTSCSCCCEEEEEEECSSCEEEEEEEECSSCEEEEEEEET
T ss_pred CCceeeeeccccccccccchhhcccccccHHHHHHHHHccccccCCCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred ccccccccccCCccHHHHHHHHHHHHHHHHHhcCCCcccccccc------------------------------------
Q 025111 81 HELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVE------------------------------------ 124 (257)
Q Consensus 81 ~el~k~g~k~~~~N~~AAy~tG~LlA~ral~k~Gl~~~YhG~vk------------------------------------ 124 (257)
+||+.+||+++++|++|||+||+|||+|||+++||++.|.|..+
T Consensus 81 ~El~~~g~k~~~~N~~AAy~vG~LiAeRAl~k~~~d~~y~G~~e~~g~~~~ve~~~~~~~~f~~~LD~Gl~rtt~G~RVf 160 (301)
T 4a17_M 81 YELKRFGVSTGLASYAAAYATGLLLARRLLKQIGLDTVYAGQTKVDGAYFNVDEDQKEKKPFKAILDAGLVRTTTGNRVF 160 (301)
T ss_dssp THHHHTTCCSCTTSHHHHHHHHHHHHHHHHHHHTCTTTCCCCSSCCCSCCCGGGTCCSSCCCBCEEECTTSCCCSSCHHH
T ss_pred ccchhccccCCCCcHHHHHHHHHHHHHHHHHhcCCcccccCccccccceeecccccCCCCceEEEEecCCcccCcccchh
Confidence 99999999999999999999999999999999999999998661
Q ss_pred ----ccccccccccCCCCccCCcCCCC-----CCCCHHhhhcccccccHHHHHHhhcccChHHHHhhHHHHHHc--CCCc
Q 025111 125 ----GALDGGLDIPHSDKRFAGFSKDG-----KQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKK--GIDA 193 (257)
Q Consensus 125 ----GArD~GL~IPhs~~~fp~~~~~~-----k~~~ae~~~~rI~G~hVa~Ym~~L~eed~e~ykkqFS~yik~--gi~p 193 (257)
||+||||+||||+++|||||.|+ ++||||+|++||+|+|||+||++|+|||||+|++|||+||++ ||+|
T Consensus 161 aalKGA~DgGL~IPhs~~~fpg~~~e~~~~~~k~~~ae~~r~~I~G~hVa~Ym~~L~eedee~yk~qFs~yik~~~~i~~ 240 (301)
T 4a17_M 161 GVLKGACDGGINIPHSESRFPGYVRASDEGESSKYKPEDHKARIFGKHIDAYMKHLKGQSNEAFQKQFSKWSKTLEAAKV 240 (301)
T ss_dssp HHHHHHHHTTCBCCCCSSSSSSEEECCSSCCCEEECHHHHHHHHHTHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhcccccCcccCCCCccCCCcccccccccccccCHHHHHHHhcCccHHHHHHHhhhhCHHHHHHHHHHHHhhccCCCh
Confidence 99999999999999999999987 999999999999999999999999999999999999999999 9999
Q ss_pred chHHHHHHHHHHHHhcCCCCCCCCCC---CcccccccCCCCCCHHHHHHHHHHHHHHHhh
Q 025111 194 DGLEALYKKVHAAIRADPTMKKSEKP---APKEHKRYNLKKLTYEERKAKLVERLNALNS 250 (257)
Q Consensus 194 ~~~e~~y~~~~~~I~~~P~~~k~~k~---~~~~~k~~~~~Klt~~qrk~rv~~K~~~~~~ 250 (257)
|+||+||++||++||+||++++++++ ++..+|+||++|||++||++||+||+++|.+
T Consensus 241 ~~~e~~y~~~h~~Ir~~p~~~k~~~~~~~~~~~~k~~~~~klt~~qrk~~v~~k~~~~~~ 300 (301)
T 4a17_M 241 DSVEKLFTKVHAEIRKNPERVKSTKKNDKPKRDHKKFYPTKLTAAQRKDRVKTKFQLALS 300 (301)
T ss_dssp SCHHHHHHHHHHHHHHSCCCCCCCCCCCCCCHHHHHHSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhCccccccccccccccccccccCcccCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998877665 3457799999999999999999999999875
No 3
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=5.7e-108 Score=749.46 Aligned_cols=256 Identities=56% Similarity=0.939 Sum_probs=191.4
Q ss_pred CcceeeecCccccccccccchhhccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEec
Q 025111 1 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYA 80 (257)
Q Consensus 1 m~fvk~~kn~ay~~ryqvk~rRRregkTdY~~R~rli~~~knkyns~kpRLvVr~Snr~I~aQIi~~~~~GD~tlasAsS 80 (257)
||||||+||+|||+||||||||||||||||++|+|||+||+||||||+||||||+||+|||||||++.++||+|||||||
T Consensus 1 m~fvkv~kn~aYf~Ryqvk~RRRReGKTdY~~R~rLi~qdknkynt~kpRLvVrrSNk~I~aQII~~~~~gd~tLasAsS 80 (297)
T 2zkr_n 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCARYA 80 (297)
T ss_dssp ----------CCSTTCCCCCHHHHTTCSCHHHHHHHHCCCSTTCSCCSEEEEEEEETTEEEEEEEECCSSSCEEEEEEEG
T ss_pred CCceeeeeccccccccccchhhhccccchHHHHHHHHhcCCcccCCCCceEEEEEecCcEEEEEEeccCCCCEEEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCccHHHHHHHHHHHHHHHHHhcCCCccccccc-------------------------------------
Q 025111 81 HELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNV------------------------------------- 123 (257)
Q Consensus 81 ~el~k~g~k~~~~N~~AAy~tG~LlA~ral~k~Gl~~~YhG~v------------------------------------- 123 (257)
+||++|||+++++|++||||||+|||+|||+++||+..|.|.+
T Consensus 81 ~El~kyg~k~g~tN~aAAy~tGlLlArRal~k~~ld~~y~G~~e~~g~~~~ve~~~~~~gi~~vvfDrGl~ryttggRVf 160 (297)
T 2zkr_n 81 HELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVF 160 (297)
T ss_dssp GGGGGTCCCSCSSSHHHHHHHHHHHHHHHHCCCSCCCCCSSCCSSSSCCCCCSSSCSSSCCCBEEEECTTSCCCTTCHHH
T ss_pred CcccccccccCCCcHHHHHHHHHHHHHHHHHhhccchhhcCccccccccccccccccCCCceEEEEecCCcccCCCchHH
Confidence 9999999999999999999999999999999999888777652
Q ss_pred ---cccccccccccCCCCccCCcCCCCCCCCHHhhhcccccccHHHHHHhhcccChHHHHhhHHHHHHcCCCcchHHHHH
Q 025111 124 ---EGALDGGLDIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALY 200 (257)
Q Consensus 124 ---kGArD~GL~IPhs~~~fp~~~~~~k~~~ae~~~~rI~G~hVa~Ym~~L~eed~e~ykkqFS~yik~gi~p~~~e~~y 200 (257)
+||+||||+||||+++|||||.++++||||+|++||+|+|||+||++|+|||||+|++|||+||++||+||+||+||
T Consensus 161 a~akGArDgGL~~Phs~~~fpg~d~e~k~~~ae~~r~rI~G~hVa~Ym~~L~eedee~yk~qFs~yik~gi~~~~le~~y 240 (297)
T 2zkr_n 161 GALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMY 240 (297)
T ss_dssp HHHHHHHHTTCBCCCCGGGSCCCCCCCCCC-CCCCCSSSSSSHHHHHHHTCSSSCTTTCSSCEEEEETTEEESSCCSHHH
T ss_pred HHHHHHHhcCcccCCCCccCCCCCccccccCHHHHHHhhCCeeHHHHHHHhhhcCHHHHHHHHHHHHHCCCChhHHHHHH
Confidence 19999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHHHhhhhccccC
Q 025111 201 KKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNALNSAVDEEDE 257 (257)
Q Consensus 201 ~~~~~~I~~~P~~~k~~k~~~~~~k~~~~~Klt~~qrk~rv~~K~~~~~~~~~~~~~ 257 (257)
++||++|++||+++++++++.+ +|+||++|||++||++||+||+++|+...+.++|
T Consensus 241 ~~~~~~Ir~~P~~~~~~k~~~~-~k~~~~~klt~~qrk~rv~~k~~~~~~~~~~~~~ 296 (297)
T 2zkr_n 241 KKAHAAIRENPVYEKKPKKEVK-KKRWNRPKMSLAQKKDRVAQKKASFLRAQERAAE 296 (297)
T ss_dssp HHHHHHC--------------------------------------------------
T ss_pred HHHHHHHHhCCCcccccccccc-cccccccccChHHHHHHHHHHHHHHHHhhhhhcc
Confidence 9999999999999888877654 4899999999999999999999999976555543
No 4
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Q
Probab=100.00 E-value=1.1e-106 Score=742.30 Aligned_cols=249 Identities=81% Similarity=1.251 Sum_probs=240.3
Q ss_pred CcceeeecCccccccccccchhhccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEec
Q 025111 1 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYA 80 (257)
Q Consensus 1 m~fvk~~kn~ay~~ryqvk~rRRregkTdY~~R~rli~~~knkyns~kpRLvVr~Snr~I~aQIi~~~~~GD~tlasAsS 80 (257)
|||||||||+|||+||||||||||||||||++|+|||+|||||||||+|||| ||+|||||||++.++||+|||||||
T Consensus 5 ~~fvKvvKnkaYf~RyqvkfRRRREGKTdY~~R~rLi~qdknKyntpKpRLV---SNrhIyaQII~~~i~GD~tLaSAsS 81 (304)
T 3iz5_Q 5 GGFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYS 81 (304)
T ss_dssp SSHHHHTTTBHHHHHHHSSCHHHHHTCCCHHHHHHHHTTSCCEEECCCSSSS---CSSCCEEEEEEEETTEEEEEEEEET
T ss_pred cceeeeeeccccccccccchhhcccccccHHHHHHHHHcCccccCCCCceee---cCCcEEEEEEecCCCCCEEEEEEec
Confidence 8999999999999999999999999999999999999999999999999999 9999999999999899999999999
Q ss_pred ccccccccccCCccHHHHHHHHHHHHHHHHHhcCCCcccccccc------------------------------------
Q 025111 81 HELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVE------------------------------------ 124 (257)
Q Consensus 81 ~el~k~g~k~~~~N~~AAy~tG~LlA~ral~k~Gl~~~YhG~vk------------------------------------ 124 (257)
+||++|||+++++|++||||||+|||+|||+++||+..|.|..+
T Consensus 82 ~EL~kyG~k~g~~N~aAAy~tGlLiA~RAl~k~~ld~~y~G~~e~~g~~~~ve~~~~~~~f~~~LDiGL~rtttG~RVfa 161 (304)
T 3iz5_Q 82 HELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFG 161 (304)
T ss_dssp TTGGGGSCCSCTTSHHHHHHHHHHHHHHHHTTCSSCCCCCSSSCCCSCCCSSCCSSCSCCCSCEEECTTCCCCSSCHHHH
T ss_pred CchhhcccCCCCCcHHHHHHHHHHHHHHHHHhhCCccccCCccccccceecccccCCCCCceEEEecCCcccccCceeEE
Confidence 99999999999999999999999999999999999999987542
Q ss_pred ---ccccccccccCCCCccCCcCCCCCCCCHHhhhcccccccHHHHHHhhcccChHHHHhhHHHHHHcCCCcchHHHHHH
Q 025111 125 ---GALDGGLDIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYK 201 (257)
Q Consensus 125 ---GArD~GL~IPhs~~~fp~~~~~~k~~~ae~~~~rI~G~hVa~Ym~~L~eed~e~ykkqFS~yik~gi~p~~~e~~y~ 201 (257)
||+||||+||||+++|||||.|+++||||+|++||+|+|||+||++|+|||||+|++|||+||++||+||+||+||+
T Consensus 162 alKGA~DgGL~IPhs~~~fpg~d~e~k~~~aev~~~~I~G~hVa~Ym~~L~eedee~yk~qFs~yik~~i~~~~le~~y~ 241 (304)
T 3iz5_Q 162 ALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYK 241 (304)
T ss_dssp HHHHHHTTTCCCCCCSSSCCCGGGTSSCCCCSSSCCSCSSSSTHHHHHSCCCCCSSCCSHHHHHHHHHHHSCCCCCCCCC
T ss_pred eeccccccCcccCCCcccccCccccccccCHHHHHHHHcCccHHHHHHhccccCHHHHHHHHHHHHHcCCChhHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHHHHHhhhh
Q 025111 202 KVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNALNSAV 252 (257)
Q Consensus 202 ~~~~~I~~~P~~~k~~k~~~~~~k~~~~~Klt~~qrk~rv~~K~~~~~~~~ 252 (257)
+||++||+||++++++++++..+|+||++|||++|||+||+||+++|++..
T Consensus 242 ~~h~~Ir~~P~~~k~~~~~~~~~k~~~~~klt~~qrk~~v~~k~~~~~~~~ 292 (304)
T 3iz5_Q 242 KVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSA 292 (304)
T ss_dssp CCCCSCSCCHHHHHHCSCCCSHHHHHHHHHHHHHHHTTCSCCSSSCCCSCC
T ss_pred HHHHHHHhCccccccCCCccccccccCcccCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999998877776666789999999999999999999999998663
No 5
>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.7e-73 Score=499.79 Aligned_cols=181 Identities=35% Similarity=0.558 Sum_probs=172.8
Q ss_pred cccccccccchhhccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEeccccc-ccccc
Q 025111 11 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELP-RYGLE 89 (257)
Q Consensus 11 ay~~ryqvk~rRRregkTdY~~R~rli~~~knkyns~kpRLvVr~Snr~I~aQIi~~~~~GD~tlasAsS~el~-k~g~k 89 (257)
|..+|||||||||||||||||+|++|++|+ +|||+||+||+|||||||+++++||+|||||||+||+ ++||+
T Consensus 2 a~g~ry~vk~rrRregkt~y~~R~rl~~~~-------kpRL~V~rSnkhIyAQIId~d~~g~~tLasAST~El~lk~g~~ 74 (203)
T 3j21_O 2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSG-------KPRLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWK 74 (203)
T ss_dssp TTTTCSCCCCHHHHHTCCCHHHHHHHHTTC-------CCEEEEEECSSCEEEEEEECCTTSCEEEEEECSTTTSSSSSCC
T ss_pred CCCCccccchhhHHHHhHHHHHHHHHHhcC-------CCEEEEEEeCCeEEEEEEEecCCCCeEEEEEEccchhhhhccc
Confidence 678999999999999999999999999998 6999999999999999999777899999999999999 79999
Q ss_pred cCCccHHHHHHHHHHHHHHHHHhcCCCc--------cc--ccccc----ccccccccccCCCCccCCcCCCCCCCCHHhh
Q 025111 90 VGLTNYAAAYCTGLLLARRVLKMLEMDD--------EY--EGNVE----GALDGGLDIPHSDKRFAGFSKDGKQLDAEVH 155 (257)
Q Consensus 90 ~~~~N~~AAy~tG~LlA~ral~k~Gl~~--------~Y--hG~vk----GArD~GL~IPhs~~~fp~~~~~~k~~~ae~~ 155 (257)
.+++|++|||+||+|||+|||++ ||.. .| ||+|+ ||+|+||+||||+++|||+
T Consensus 75 ~~~~N~~AA~~vG~llA~Ral~k-GI~~vvfDrgg~~y~~hgRV~Ala~gAre~GL~iPhs~~~fp~~------------ 141 (203)
T 3j21_O 75 GHCGNTPSAYLLGLLIGYKAKQA-GIEEAILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIFPDE------------ 141 (203)
T ss_dssp SCTTSHHHHHHHHHHSSSSTTSS-CCCCCEEECCSSCCCTTSHHHHHHHHHHHHTCCCCCCSSCSCCH------------
T ss_pred CCCCcHHHHHHHHHHHHHHHHhC-CCCEEEEecCcceeccCcchhhhhhhcccCCeecccCCccCCCc------------
Confidence 99999999999999999999997 9976 66 79985 9999999999999999995
Q ss_pred hcccccccHHHHHHhhcccChHHHHhhHHHHHHcCCCcchHHHHHHHHHHHHhcCCC
Q 025111 156 RKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPT 212 (257)
Q Consensus 156 ~~rI~G~hVa~Ym~~L~eed~e~ykkqFS~yik~gi~p~~~e~~y~~~~~~I~~~P~ 212 (257)
+||+|+|||+||++|+|||||+|++|||+||++||+||+||+||++||++|++...
T Consensus 142 -~ri~G~hva~y~~~L~eed~e~yk~qFs~yik~~~~~~~~~~~~~~~~~~I~~~~~ 197 (203)
T 3j21_O 142 -YRIRGEHIAEYAKMLKEQDEEKFRRQFGGYLVKGLDPEKLPEHFEEVKARIIEKFE 197 (203)
T ss_dssp -HHHHTCHHHHHHHHCCSSCCCSSSCCCSCSCCCSSSSSCCHHHHHHHHTTCTTTTC
T ss_pred -ccccCccHHHHHHHhhhhCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999999999999999999999999999999999999998764
No 6
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ...
Probab=100.00 E-value=1.2e-66 Score=452.84 Aligned_cols=170 Identities=35% Similarity=0.537 Sum_probs=161.3
Q ss_pred cccccccccchhhccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEeccccccccccc
Q 025111 11 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEV 90 (257)
Q Consensus 11 ay~~ryqvk~rRRregkTdY~~R~rli~~~knkyns~kpRLvVr~Snr~I~aQIi~~~~~GD~tlasAsS~el~k~g~k~ 90 (257)
|..+|||||||||||||||||+|+||++++ +|||+||+||+|||||||+++++||+|||||||+|++++||+.
T Consensus 2 a~g~ry~vk~rrrregkTdy~~R~rl~~~~-------rpRL~V~rSnkhIyAQII~~dd~~~~tlasAsT~e~~k~~~k~ 74 (187)
T 1vq8_N 2 ATGPRYKVPMRRRREARTDYHQRLRLLKSG-------KPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEA 74 (187)
T ss_dssp CCSTTCCCCCHHHHTTCCCHHHHHHHHTTC-------SCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGGGGTCCS
T ss_pred CCCCcccccccchhccchhHHHHHHHHhcC-------CCEEEEEEeCCcEEEEEEEecCCCCEEEEEEEccchhcccccc
Confidence 678999999999999999999999999987 6999999999999999996667899999999999999889987
Q ss_pred CCccHHHHHHHHHHHHHHHHHhcCCCc--------ccc--cccc----ccccccccccCCCCccCCcCCCCCCCCHHhhh
Q 025111 91 GLTNYAAAYCTGLLLARRVLKMLEMDD--------EYE--GNVE----GALDGGLDIPHSDKRFAGFSKDGKQLDAEVHR 156 (257)
Q Consensus 91 ~~~N~~AAy~tG~LlA~ral~k~Gl~~--------~Yh--G~vk----GArD~GL~IPhs~~~fp~~~~~~k~~~ae~~~ 156 (257)
+++|++|||+||+|||+|||++ ||.. .|| |+|+ ||+|+||++|||+++||||
T Consensus 75 ~~~N~~AA~~vG~llA~Ral~k-GI~~vvfDrgg~~yh~GgRV~Ala~gAre~GL~fph~~~~fp~~------------- 140 (187)
T 1vq8_N 75 PTGNMPSAYLTGLLAGLRAQEA-GVEEAVLDIGLNSPTPGSKVFAIQEGAIDAGLDIPHNDDVLADW------------- 140 (187)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHT-TCCBCEEECTTSCCCTTCHHHHHHHHHHHTTCBCCCCGGGSCCH-------------
T ss_pred CCCcHHHHHHHHHHHHHHHHHC-CCCEEEEcCCCceeccchHHHHHHHHhhcCCEeccCCCccCCCC-------------
Confidence 8999999999999999999997 9977 899 9985 9999999999999999996
Q ss_pred cccccccHHHHHHhhcccChHHHHhhHHHHHHcCCCcchHHHHHHHHHHHHhcCCC
Q 025111 157 KYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPT 212 (257)
Q Consensus 157 ~rI~G~hVa~Ym~~L~eed~e~ykkqFS~yik~gi~p~~~e~~y~~~~~~I~~~P~ 212 (257)
+||+|+|||+||++|. | +||++||+||+||+||++||++|++||+
T Consensus 141 ~ri~G~hva~y~~~l~---~--------~y~~~~~~~~~l~~~~~~~~~~I~~~p~ 185 (187)
T 1vq8_N 141 QRTRGAHIAEYDEQLE---E--------PLYSGDFDAADLPEHFDELRETLLDGDI 185 (187)
T ss_dssp HHHHTHHHHHHHHSCS---S--------CSSSSCSCSSCCHHHHHHHHHHHHSSSS
T ss_pred ceeccEEHHHHHHHhh---H--------HHHHCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 7999999999999993 2 8999999999999999999999999996
No 7
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...
Probab=99.96 E-value=1.3e-29 Score=205.59 Aligned_cols=97 Identities=31% Similarity=0.323 Sum_probs=88.4
Q ss_pred hhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecccccccccccCCccHHHHHHHHHHHHH
Q 025111 28 TDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLAR 107 (257)
Q Consensus 28 TdY~~R~rli~~~knkyns~kpRLvVr~Snr~I~aQIi~~~~~GD~tlasAsS~el~k~g~k~~~~N~~AAy~tG~LlA~ 107 (257)
...+.|.|..+.+ +++|||+||+||+||||||||| +||+|||||||+|++.+||..+++|++|||+||+|||+
T Consensus 7 ~~r~~r~R~ki~~-----~~rpRL~V~rSnkhIyAQiidd--~~g~tlasAST~e~~~~~~~~~~~n~~AA~~vG~llA~ 79 (116)
T 3r8s_O 7 IRRATRARRKLQE-----LGATRLVVHRTPRHIYAQVIAP--NGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAE 79 (116)
T ss_dssp HHHHHHHHHHHHT-----TTCCEEEEEECSSCEEEEEECT--TSSCEEEECCSSSHHHHTTCSCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-----CCCCEEEEEEeCCEEEEEEEEc--CCCeEEEEEeeCchhhccccCCCCCHHHHHHHHHHHHH
Confidence 3456777777776 6899999999999999999986 58899999999999999998899999999999999999
Q ss_pred HHHHhcCCCc--------ccccccc----cccccccc
Q 025111 108 RVLKMLEMDD--------EYEGNVE----GALDGGLD 132 (257)
Q Consensus 108 ral~k~Gl~~--------~YhG~vk----GArD~GL~ 132 (257)
||+++ ||+. .|||+|+ ||||+||+
T Consensus 80 Ral~~-GI~~vvfDrgg~~yhGrV~Ala~~are~Gl~ 115 (116)
T 3r8s_O 80 RALEK-GIKDVSFDRSGFQYHGRVQALADAAREAGLQ 115 (116)
T ss_dssp HHHTT-TCCCCEEECTTSCSSSHHHHHHHHHHHTTCC
T ss_pred HHHHC-CCCEEEEecCCCcccHHHHHHHHHHHHhCCC
Confidence 99997 9987 8999995 99999996
No 8
>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1
Probab=99.95 E-value=6.7e-29 Score=202.67 Aligned_cols=100 Identities=29% Similarity=0.361 Sum_probs=77.4
Q ss_pred cCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecccccccccccCCccHHHHHHHHHH
Q 025111 25 EGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLL 104 (257)
Q Consensus 25 egkTdY~~R~rli~~~knkyns~kpRLvVr~Snr~I~aQIi~~~~~GD~tlasAsS~el~k~g~k~~~~N~~AAy~tG~L 104 (257)
+.+...+.|.|..++|+ +++|||+||+||+||||||||+ +||+|||||||+|++ ++ ..+++|++|||+||+|
T Consensus 9 ~~r~~r~~R~r~ki~gt----~~rpRL~V~rSnkhIyAQiidd--~~~~tl~sAsT~e~~-~~-~~~~~n~~AA~~vG~l 80 (120)
T 1ovy_A 9 AVRKKRHARIRKKIFGT----TERPRLSVFRSNKHIYAQIIDD--TKSATIVSASTLDKE-FG-LDSTNNIEAAKKVGEL 80 (120)
T ss_dssp ---------------CC----SSCCSEEEEEETTEEEEEEECC--SSCCCEEEESTTSTT-TC-SSCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC----CCCCEEEEEEeCCeEEEEEEEc--CCCEEEEEEecCchh-hC-cCCCCcHHHHHHHHHH
Confidence 44556788999999997 8899999999999999999986 589999999999998 55 4468999999999999
Q ss_pred HHHHHHHhcCCCc--------ccccccc----ccccccccc
Q 025111 105 LARRVLKMLEMDD--------EYEGNVE----GALDGGLDI 133 (257)
Q Consensus 105 lA~ral~k~Gl~~--------~YhG~vk----GArD~GL~I 133 (257)
||+||+++ ||++ .|||+|+ ||+|+||+.
T Consensus 81 lA~Ral~~-GI~~vvfDrgg~~yhgrV~ala~~are~GL~f 120 (120)
T 1ovy_A 81 VAKRALEK-GIKQVVFDRGGYLYHGRVKALADAAREAGLEF 120 (120)
T ss_dssp HHHHHHHH-SSSCCCCCSTTCSSCSSTHHHHHHHHHHHCCC
T ss_pred HHHHHHHC-CCCEEEEecCCccccHHHHHHHHHHHHhCCcC
Confidence 99999998 9976 8999995 999999973
No 9
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...
Probab=99.94 E-value=2.4e-27 Score=191.46 Aligned_cols=95 Identities=26% Similarity=0.328 Sum_probs=84.1
Q ss_pred cCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecccccccccccCCccHHHHHHHHHH
Q 025111 25 EGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLL 104 (257)
Q Consensus 25 egkTdY~~R~rli~~~knkyns~kpRLvVr~Snr~I~aQIi~~~~~GD~tlasAsS~el~k~g~k~~~~N~~AAy~tG~L 104 (257)
+.+...+.|.|..++|+ ++|||+||+||+||||||||+ +||+|||||||+|++. + ++|++|||+||+|
T Consensus 5 ~~r~~r~~r~r~ki~gt-----~rpRL~V~rSnkhiyAQiidd--~~~~tlasAsT~e~~~---k--~~n~~AA~~vG~l 72 (112)
T 3v2d_S 5 TAYERRKFRVRNRIKRT-----GRLRLSVFRSLKHIYAQIIDD--EKGVTLVSASSLALKL---K--GNKTEVARQVGRA 72 (112)
T ss_dssp CHHHHHHHHHHHHHHHT-----CCCEEEEEECSSCEEEEEEET--TTTEEEEEEETTTTTC---C--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC-----CCCEEEEEEeCCeEEEEEEec--CCCeEEEEEEecchhc---c--CCCHHHHHHHHHH
Confidence 34455678888888884 599999999999999999986 5889999999999973 2 6899999999999
Q ss_pred HHHHHHHhcCCCc--------ccccccc----cccccccc
Q 025111 105 LARRVLKMLEMDD--------EYEGNVE----GALDGGLD 132 (257)
Q Consensus 105 lA~ral~k~Gl~~--------~YhG~vk----GArD~GL~ 132 (257)
||+||+++ ||++ .|||+|+ ||+|+||+
T Consensus 73 lA~ra~~~-GI~~vvfDrgg~~yhGrV~Ala~~are~GL~ 111 (112)
T 3v2d_S 73 LAEKALAL-GIKQVAFDRGPYKYHGRVKALAEGAREGGLE 111 (112)
T ss_dssp HHHHHHTT-TCCBCEEECTTSCSCSSTTHHHHHHHHTTCB
T ss_pred HHHHHHHC-CCCEEEEecCCCcccHHHHHHHHHHHHcCCC
Confidence 99999997 9987 9999996 99999996
No 10
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P
Probab=99.92 E-value=3.7e-27 Score=190.90 Aligned_cols=95 Identities=27% Similarity=0.338 Sum_probs=81.2
Q ss_pred chhHHHHHHHHHhCCCCCC--CCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecccccccccccCCccHHHHHHHHHH
Q 025111 27 KTDYRARIRLINQDKNKYN--TPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLL 104 (257)
Q Consensus 27 kTdY~~R~rli~~~knkyn--s~kpRLvVr~Snr~I~aQIi~~~~~GD~tlasAsS~el~k~g~k~~~~N~~AAy~tG~L 104 (257)
+...+.|.|..++|+ + +++|||+||+||+||||||||+ +||+|||||||+|| .+++|++|||+||+|
T Consensus 6 r~~r~~r~r~ki~gt---~~~~~rpRL~V~rSnkhIyAQiidd--~~~~tl~sAST~el------~~~~n~~AA~~vG~l 74 (114)
T 2zjr_L 6 TIRRKLRTRRKVRTT---TAASGRLRLSVYRSSKHIYAQIIDD--SRGQTLAAASSAAL------KSGNKTDTAAAVGKA 74 (114)
T ss_dssp --CHHHHHHHHHHSC---STTTCSEEECCCTTSSCCCCCEEET--TTTEECCCCCSCSC------CTTCSSSSHHHHHHH
T ss_pred HHHHHHHHHhhhccc---cCCCCCCEEEEEEeCCeEEEEEEEc--CCCEEEEEEEchHh------cCCCCHHHHHHHHHH
Confidence 345688899999884 3 6799999999999999999976 58999999999996 257899999999999
Q ss_pred HHHHHHHhcCCCc--------ccccccc----ccccccccc
Q 025111 105 LARRVLKMLEMDD--------EYEGNVE----GALDGGLDI 133 (257)
Q Consensus 105 lA~ral~k~Gl~~--------~YhG~vk----GArD~GL~I 133 (257)
||+||+++ ||++ .|||+|+ ||+|+||++
T Consensus 75 lA~Ral~~-GI~~vvfDrgg~~yhgrV~Ala~~are~GL~f 114 (114)
T 2zjr_L 75 LAAAAAEK-GIKQVVFDRGSYKYHGRVKALADAAREGGLDF 114 (114)
T ss_dssp HHHHHHTT-CCCCCEECCCSSCSCSHHHHHHHHHHHHC---
T ss_pred HHHHHHHC-CCCEEEEecCCccccHHHHHHHHHHHHhCCcC
Confidence 99999997 9977 8999995 999999974
No 11
>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.91 E-value=4.6e-26 Score=193.92 Aligned_cols=101 Identities=24% Similarity=0.300 Sum_probs=86.9
Q ss_pred ccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEeccccc---ccccccCCccHHHHHH
Q 025111 24 REGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELP---RYGLEVGLTNYAAAYC 100 (257)
Q Consensus 24 regkTdY~~R~rli~~~knkyns~kpRLvVr~Snr~I~aQIi~~~~~GD~tlasAsS~el~---k~g~k~~~~N~~AAy~ 100 (257)
.+.+...+.|.|..++|+ +.+|||+||+||+||||||||| .+|+|||||||.|.+ .++| ++++|++||++
T Consensus 45 ~~~R~rR~~RiR~ki~gt----~~rPRL~V~rSnkhIyAQvIdd--~~g~tLasASTlek~lk~~l~~-g~~~n~~AA~~ 117 (161)
T 3bbo_Q 45 REDRTARHVRIRKKVEGT----PERPRLCVFRSNKHLYVQVIDD--SKMHTLASASTMQKSISEELDY-SSSPTIEVAKK 117 (161)
T ss_dssp CCCGGGTSCCSCSGGGGS----SSCCCCEEEECSSCEEEEEECC--TTSCEEEEEEHHHHHHHHCCTT-CCSSSHHHHHH
T ss_pred HHHHHHHHHHHHHhhccC----CCCCEEEEEecCCeEEEEEEEC--CCCEEEEEEeCCcHHHHhhccc-cCCCCHHHHHH
Confidence 344555677888889997 7799999999999999999987 478999999998754 2455 46789999999
Q ss_pred HHHHHHHHHHHhcCCCc--------ccccccc----cccccccc
Q 025111 101 TGLLLARRVLKMLEMDD--------EYEGNVE----GALDGGLD 132 (257)
Q Consensus 101 tG~LlA~ral~k~Gl~~--------~YhG~vk----GArD~GL~ 132 (257)
||.+||+||+++ ||++ .|||+|+ ||||+||+
T Consensus 118 VG~liAeRA~e~-GI~~VvFDRgg~~YhGRVkAladaaRe~GL~ 160 (161)
T 3bbo_Q 118 VGEVIASACLEK-GITKVAFDRGGYPYHGRVKALADAAREKGLQ 160 (161)
T ss_dssp HHHHSSSHHHHT-SSCCCCCCCSSSCSSSTTHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHC-CCCEEEEeCCCCcchHHHHHHHHHHHHhCCc
Confidence 999999999997 9976 9999996 99999996
No 12
>4gmn_B 60S ribosomal protein L5-like protein; ARM, heat, solenoid, linear motif, nuclear transport, chaper ribosome assembly, RPL11, KAP104; 2.95A {Chaetomium thermophilum}
Probab=99.89 E-value=5.3e-25 Score=152.09 Aligned_cols=42 Identities=64% Similarity=0.957 Sum_probs=41.2
Q ss_pred CcceeeecCccccccccccchhhccCchhHHHHHHHHHhCCC
Q 025111 1 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKN 42 (257)
Q Consensus 1 m~fvk~~kn~ay~~ryqvk~rRRregkTdY~~R~rli~~~kn 42 (257)
||||||+||+|||+||||+|||||||||||++|++||+|||+
T Consensus 1 M~FvKvvKnkaYfkRyQvkfRRRREGKTDYyaRkrLv~QdKa 42 (49)
T 4gmn_B 1 MAFHKLVKNSAYYSRFQTKFKRRRQGKTDYYARKRLITQAKG 42 (49)
T ss_pred CCceeeehhHHHHHHHhhHHhhhhcccchHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999984
No 13
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=95.66 E-value=0.035 Score=45.36 Aligned_cols=91 Identities=18% Similarity=0.188 Sum_probs=67.7
Q ss_pred CCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecccccccccccCCccHHHHHHHHHHHHHHHHHhcCCCc---cccc-
Q 025111 46 TPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDD---EYEG- 121 (257)
Q Consensus 46 s~kpRLvVr~Snr~I~aQIi~~~~~GD~tlasAsS~el~k~g~k~~~~N~~AAy~tG~LlA~ral~k~Gl~~---~YhG- 121 (257)
-+.+.+-|+-|-+++++.|.|. .| .+++.+|+-.+...|-. -+..-||+.++.-+|+++.+. ||.. ...|
T Consensus 14 ~~~gi~hI~as~NNTivtiTd~--~G-~~~~~~SaG~~gfKg~r--k~tp~AA~~aa~~~~~~~~~~-Gi~~v~V~vkG~ 87 (129)
T 2vqe_K 14 VASGRAYIHASYNNTIVTITDP--DG-NPITWSSGGVIGYKGSR--KGTPYAAQLAALDAAKKAMAY-GMQSVDVIVRGT 87 (129)
T ss_dssp CSEEEEEEEECSSCEEEEEECT--TS-CEEEECCTTTTTCCSGG--GGSHHHHHHHHHHHHHHHHTT-TCCEEEEEEESC
T ss_pred ccceEEEEEecCCCEEEEEEcC--CC-CEEEEEeccceeEcCCC--cCCHHHHHHHHHHHHHHHHHh-CCeEEEEEEECC
Confidence 4568899999999999999997 47 67777787766544422 356889999999999999994 9866 3333
Q ss_pred ---c---cccccccccc---------ccCCCCccCC
Q 025111 122 ---N---VEGALDGGLD---------IPHSDKRFAG 142 (257)
Q Consensus 122 ---~---vkGArD~GL~---------IPhs~~~fp~ 142 (257)
+ +.+...+||. |||+-.|-|.
T Consensus 88 G~Gre~airaL~~~Gl~I~~I~DvTpiPhnGcRp~K 123 (129)
T 2vqe_K 88 GAGREQAIRALQASGLQVKSIVDDTPVPHNGCRPKK 123 (129)
T ss_dssp CTTHHHHHHHHHTSSSEEEECEECCCCCSSCSCCCG
T ss_pred CCCHHHHHHHHHHCCCEEEEEEEcCCCCCCCCCCCC
Confidence 2 2355556765 6999888876
No 14
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=95.36 E-value=0.041 Score=45.49 Aligned_cols=91 Identities=15% Similarity=0.096 Sum_probs=66.4
Q ss_pred cceEEEEecCCcEEEEEEeeecCCCEEEEEEecccccccccccCCccHHHHHHHHHHHHHHHHHhcCCCc---ccccc--
Q 025111 48 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDD---EYEGN-- 122 (257)
Q Consensus 48 kpRLvVr~Snr~I~aQIi~~~~~GD~tlasAsS~el~k~g~k~~~~N~~AAy~tG~LlA~ral~k~Gl~~---~YhG~-- 122 (257)
..-+-|+-|-+++++.|.|. .|..||+.+|+-.....|-. -+..-||.+++.-+|+++++. ||.. ...|.
T Consensus 14 ~gi~hI~asfNNTivtiTD~--~G~~~i~~~S~G~~gfkg~~--ksTp~AA~~aa~~~~~~a~e~-Gi~~v~V~vkG~gg 88 (137)
T 3j20_M 14 WGIAHIYSSFNNTIIHITDI--TGAETISRWSGGMVVKADRD--EPSPYAAMLAARRAAEEALEK-GIVGVHIRVRAPGG 88 (137)
T ss_dssp EEEEEEEECSSCEEEEEEES--SSCSEEEEEEGGGTCSCTTT--SSSHHHHHHHHHHHHHHHHHH-TEEEEEEEEECCCS
T ss_pred ceEEEEEcCCCCEEEEEEcC--CCCEEEEEEccceeeecCCc--cCCHHHHHHHHHHHHHHHHHc-CCeEEEEEEECCCC
Confidence 45666888999999999997 48668988887766444422 245678999999999999995 8865 33341
Q ss_pred -------------cccccccccc---------ccCCCCccCCc
Q 025111 123 -------------VEGALDGGLD---------IPHSDKRFAGF 143 (257)
Q Consensus 123 -------------vkGArD~GL~---------IPhs~~~fp~~ 143 (257)
+++...+||. |||+-.|-|+-
T Consensus 89 ~~~~~pG~GresairaL~~~Gl~I~~I~DvTpiPhnGcRp~g~ 131 (137)
T 3j20_M 89 SKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGTRPKGG 131 (137)
T ss_dssp SSCCSCCTHHHHHHHHHHHHTCEEEEEEECCCCCSSCCCCSCC
T ss_pred CCCcCCCCcHHHHHHHHHhCCCEEEEEEEcCCCCCCCCCCCCC
Confidence 1244456776 59999999973
No 15
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=94.58 E-value=0.062 Score=43.14 Aligned_cols=91 Identities=19% Similarity=0.128 Sum_probs=65.1
Q ss_pred CCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecccccccccccCCccHHHHHHHHHHHHHHHHHhcCCCc---cccc-
Q 025111 46 TPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDD---EYEG- 121 (257)
Q Consensus 46 s~kpRLvVr~Snr~I~aQIi~~~~~GD~tlasAsS~el~k~g~k~~~~N~~AAy~tG~LlA~ral~k~Gl~~---~YhG- 121 (257)
-+.--+-|+-|-+++++.|.|. .| .+|+.+|+-.+...|-. -+..-||++++.-+++++++. ||.. ...|
T Consensus 4 ~~~gi~hI~as~NNTivtiTD~--~G-~~i~~~S~G~~gfKg~r--k~tp~AA~~aa~~~~~~~~~~-Gi~~v~v~vkG~ 77 (117)
T 3r8n_K 4 VSDGVAHIHASFNNTIVTITDR--QG-NALGWATAGGSGFRGSR--KSTPFAAQVAAERCADAVKEY-GIKNLEVMVKGP 77 (117)
T ss_dssp CCEEEEEEEECSSCEEEEEECT--TS-CCSEEEETGGGSCCGGG--GSSHHHHHHHHHHHHHHHTTS-CCCEEEEEEECS
T ss_pred cceeEEEEEcccCCEEEEEEcC--CC-CEEEEEcCCccccCCCc--cCCHHHHHHHHHHHHHHHHHh-CCcEEEEEEeCC
Confidence 3445566888999999999997 47 48888888776544433 245678899999999999984 9876 2222
Q ss_pred ---c---cccccccccc---------ccCCCCccCC
Q 025111 122 ---N---VEGALDGGLD---------IPHSDKRFAG 142 (257)
Q Consensus 122 ---~---vkGArD~GL~---------IPhs~~~fp~ 142 (257)
+ +++...+||. |||+-.|-|.
T Consensus 78 G~Gr~~airaL~~~Gl~I~~I~DvTpiphnGcRp~K 113 (117)
T 3r8n_K 78 GPGRESTIRALNAAGFRITNITDVTPIPHNGCRPPK 113 (117)
T ss_dssp SSSTTHHHHHHHHTTCEEEEEEECCCCCSSCSCCCC
T ss_pred CccHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCCCC
Confidence 2 2355557776 5998888775
No 16
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=94.35 E-value=0.046 Score=45.35 Aligned_cols=91 Identities=21% Similarity=0.172 Sum_probs=66.9
Q ss_pred CCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecccccccccccCCccHHHHHHHHHHHHHHHHHhcCCCc---cccc-
Q 025111 46 TPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDD---EYEG- 121 (257)
Q Consensus 46 s~kpRLvVr~Snr~I~aQIi~~~~~GD~tlasAsS~el~k~g~k~~~~N~~AAy~tG~LlA~ral~k~Gl~~---~YhG- 121 (257)
-+.+-+-|+-|-+++++.|.|. .| .+++.+|+-.+...|-. -+..-||+.++.-+++++.+. ||.. ...|
T Consensus 27 ~~~gi~hI~as~NNTivtiTD~--~G-~~i~~~SaG~~GfKg~r--ksTp~AA~~aa~~~~~~a~e~-Gi~~v~V~vkG~ 100 (140)
T 3bbn_K 27 IPKGVIHVQASFNNTIVTVTDV--RG-RVVSWASAGTCGFRGTK--RGTPFAAQTAAGNAIRTVVEQ-GMQRAEVMIKGP 100 (140)
T ss_dssp CCCCEEEEEECSSCEEEEEECS--SS-CEEEEEETTTSSCCTTS--CSSHHHHHHHHTSGGGTSTTT-CCCEEEEEEESC
T ss_pred ceeeEEEEEecCCCEEEEEEcC--CC-CEEEEEeccceeEcccc--cCCHHHHHHHHHHHHHHHHHh-CCeEEEEEEECC
Confidence 4568999999999999999997 47 67877887666544422 356889999999999999884 9866 3333
Q ss_pred ---c---cccccccccc---------ccCCCCccCC
Q 025111 122 ---N---VEGALDGGLD---------IPHSDKRFAG 142 (257)
Q Consensus 122 ---~---vkGArD~GL~---------IPhs~~~fp~ 142 (257)
+ +.+...+||. |||+-.|-|.
T Consensus 101 G~GReaairaL~~~Gl~I~~I~DvTpiPhnGcRppK 136 (140)
T 3bbn_K 101 GLGRDAALRAIRRSGILLSFVRDVTPMPHNGCRPPK 136 (140)
T ss_dssp STTSSHHHHHHHTTTCEEEEEEECCCCCCSCCCCCC
T ss_pred CCcHHHHHHHHHHCCCEEEEEEEcCCCCCCCCCCCC
Confidence 2 2355556765 5898888775
No 17
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Probab=90.16 E-value=0.3 Score=40.96 Aligned_cols=90 Identities=13% Similarity=0.140 Sum_probs=62.5
Q ss_pred cceEEEEecCCcEEEEEEeeecCCCEEEEEEecccccccccccCCccHHHHHHHHHHHHHHHHHhcCCCc---ccccc--
Q 025111 48 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDD---EYEGN-- 122 (257)
Q Consensus 48 kpRLvVr~Snr~I~aQIi~~~~~GD~tlasAsS~el~k~g~k~~~~N~~AAy~tG~LlA~ral~k~Gl~~---~YhG~-- 122 (257)
..-+-|+-|-+++++.|.|. .|+.|+++++.-..-+.+- .-+..-||.+++.-+|++|.+. ||.. ...|-
T Consensus 28 ~gi~hI~asfNNTiVtiTD~--~G~~~~~~ssgg~~~k~~r--~ksTpyAAq~aa~~~a~~a~e~-Gi~~v~V~vkG~gg 102 (151)
T 2xzm_K 28 FGVCHIMATWNDTFIHVTDL--SGRETLVRVTGGMKVKADR--EESSPYAAMQAAIDVVNRCKEL-KINALHIKLRAKGG 102 (151)
T ss_dssp EEEEEEEBCSSCBCCEEECT--TCCSEEEECCHHHHCSSGG--GGSCHHHHHHHHHHHHHHHHHH-TCCEEEEEEECCCT
T ss_pred eeEEEEEccCCCEEEEEECC--CCCEEEEEecCcceEeCCC--CcCCHHHHHHHHHHHHHHHHHc-CCeEEEEEEEcCCC
Confidence 46778899999999999997 5877777655433222221 1245778899999999999995 9876 33321
Q ss_pred -------------cccccccccc---------ccCCCCccCC
Q 025111 123 -------------VEGALDGGLD---------IPHSDKRFAG 142 (257)
Q Consensus 123 -------------vkGArD~GL~---------IPhs~~~fp~ 142 (257)
+++...+||. |||+-.|-|.
T Consensus 103 ~~~kgpG~GresairaL~~~GlkI~~I~DvTpiPhNGcRp~K 144 (151)
T 2xzm_K 103 VETKQPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRREG 144 (151)
T ss_dssp TSCCSCCSHHHHHHHHHHHTSCEEEEEEECCCCCSSCCCCSS
T ss_pred CCccCCCccHHHHHHHHHHCCCEEEEEEEeCCCCCCCCCCCC
Confidence 1244456775 6999888887
No 18
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K*
Probab=89.84 E-value=0.24 Score=40.90 Aligned_cols=88 Identities=13% Similarity=0.148 Sum_probs=60.2
Q ss_pred cceEEEEecCCcEEEEEEeeecCCCEEEEEEecccccccccccCC--ccHHHHHHHHHHHHHHHHHhcCCCc---cc---
Q 025111 48 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGL--TNYAAAYCTGLLLARRVLKMLEMDD---EY--- 119 (257)
Q Consensus 48 kpRLvVr~Snr~I~aQIi~~~~~GD~tlasAsS~el~k~g~k~~~--~N~~AAy~tG~LlA~ral~k~Gl~~---~Y--- 119 (257)
..-+-|+-|-+++++.|.|. .|..+++ .||-.+ |++++. +..-||.+++..+|+++++. ||.. ..
T Consensus 14 ~gi~hI~asfNNTivtvTD~--~G~~~~~-~ssG~~---gfKg~r~ksTpyAAq~aa~~~a~~a~e~-Gi~~v~V~vra~ 86 (137)
T 3u5c_O 14 FGVARIYASFNDTFVHVTDL--SGKETIA-RVTGGM---KVKADRDESSPYAAMLAAQDVAAKCKEV-GITAVHVKIRAT 86 (137)
T ss_dssp EEECCEEEETTEEEECCEET--TSSSCCC-CCBTTT---TSCCSTTTTCHHHHHHHHHHHHHHHHHH-TCCEEECEEECS
T ss_pred eEEEEEEccCCCEEEEEEcC--CCCEEEE-EeCCCc---EEeCCcccCCHHHHHHHHHHHHHHHHHc-CCeEEEEEEecc
Confidence 34455888999999999997 4855444 455444 333333 45668999999999999995 9976 22
Q ss_pred -----cc-------ccccccccccc---------ccCCCCccCC
Q 025111 120 -----EG-------NVEGALDGGLD---------IPHSDKRFAG 142 (257)
Q Consensus 120 -----hG-------~vkGArD~GL~---------IPhs~~~fp~ 142 (257)
.| .+++...+||. |||+-.|-|+
T Consensus 87 gg~~~kgpG~Gr~sairaL~~~Gl~I~~I~DvTpiPhnGcRp~K 130 (137)
T 3u5c_O 87 GGTRTKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDSTRKKG 130 (137)
T ss_dssp CTTSCCSCCGGGHHHHHHHHTTTCEECCCEECCCCCSSCSCCTT
T ss_pred CCCcccCCCcchHHHHHHHHhCCCEEEEEEEcCCCCCCCCCCCC
Confidence 12 12344556776 5999888886
No 19
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=44.89 E-value=32 Score=25.93 Aligned_cols=45 Identities=22% Similarity=0.429 Sum_probs=31.3
Q ss_pred HHHHHHhhcccChHHHH-hhHHHH-HHcCCCcchHHHHHHHHHHHHhcC
Q 025111 164 VAAYMSTLMEDEPEKYQ-SHFTEY-IKKGIDADGLEALYKKVHAAIRAD 210 (257)
Q Consensus 164 Va~Ym~~L~eed~e~yk-kqFS~y-ik~gi~p~~~e~~y~~~~~~I~~~ 210 (257)
+.+|+..-.| .-.|+ .+||+. |+.+|.|++|-++.+++-..+--+
T Consensus 15 L~~yl~~~~E--~~Ly~~q~fs~~~iek~i~PEeiV~iHk~~i~el~~~ 61 (84)
T 1w53_A 15 LSRYIAELTE--TSLYQAQKFSRKTIEHQIPPEEIISIHRKVLKELYPS 61 (84)
T ss_dssp HHHHHHHCCH--HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcccH--HHHHHHHHhhHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 3456555443 22333 478876 578899999999999998888443
No 20
>2r80_A Hemoglobin subunit alpha-A; oxygen tranport/storage, heme, iron, metal-binding, oxygen transport, transport, oxygen binding; HET: HEM; 1.44A {Columba livia} PDB: 3mju_A* 3dhr_A* 3mjp_A* 1faw_A* 3eok_A* 3k8b_A* 2qmb_A* 3fs4_A* 3a59_A* 1a4f_A* 1hv4_A* 2zfb_A* 1c40_A* 3at5_A* 3at6_A*
Probab=43.83 E-value=30 Score=27.04 Aligned_cols=72 Identities=13% Similarity=0.125 Sum_probs=50.6
Q ss_pred cCCCCccCCcCCCCCCCCHH--hhhcccccccHHHHHHhhcccChHHHHhhHHHHHH--cCCCcchHHHHHHHHHHHHhc
Q 025111 134 PHSDKRFAGFSKDGKQLDAE--VHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIK--KGIDADGLEALYKKVHAAIRA 209 (257)
Q Consensus 134 Phs~~~fp~~~~~~k~~~ae--~~~~rI~G~hVa~Ym~~L~eed~e~ykkqFS~yik--~gi~p~~~e~~y~~~~~~I~~ 209 (257)
|.--.-||.+|... -|++ .|..++++ -|.+++..|. |.+.+-.+.+.--. .||+|++++.+-+-....|.+
T Consensus 37 P~~k~~F~~~~~~~--~s~~~~~h~~~v~~-al~~~v~~ld--~l~~~l~~L~~~H~~~~~V~p~~f~~~~~~Ll~~l~~ 111 (141)
T 2r80_A 37 PQTKTYFPHFDLSH--GSAQIKGHGKKVAE-ALVEAANHID--DIAGALSKLSDLHAQKLRVDPVNFKLLGHCFLVVVAV 111 (141)
T ss_dssp GGGGGGCTTSCCST--TCHHHHHHHHHHHH-HHHHHHHTTT--CHHHHTHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHH
T ss_pred chHHHHhhhcCCCC--CCHHHHHHHHHHHH-HHHHHHHhhh--hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 55566788775443 3344 67777776 4677888874 46666677776555 499999999888888888865
Q ss_pred C
Q 025111 210 D 210 (257)
Q Consensus 210 ~ 210 (257)
.
T Consensus 112 ~ 112 (141)
T 2r80_A 112 H 112 (141)
T ss_dssp H
T ss_pred H
Confidence 3
No 21
>2j6y_A Phosphoserine phosphatase RSBU; hydrolase, partner switching, protein phosphatase, RSBT, stress; 1.85A {Bacillus subtilis} PDB: 2j70_A 2j6z_A
Probab=42.57 E-value=32 Score=27.28 Aligned_cols=39 Identities=23% Similarity=0.371 Sum_probs=28.9
Q ss_pred cccChH-HHHh-hHHHH-HHcCCCcchHHHHHHHHHHHHhcCCC
Q 025111 172 MEDEPE-KYQS-HFTEY-IKKGIDADGLEALYKKVHAAIRADPT 212 (257)
Q Consensus 172 ~eed~e-~ykk-qFS~y-ik~gi~p~~~e~~y~~~~~~I~~~P~ 212 (257)
...|+. .|+- +||+. |+.+|.||+|-++.++|...+ +|+
T Consensus 20 ~~~~E~~Ly~aq~fsr~liek~I~PEeiV~iHk~~i~~l--~~~ 61 (111)
T 2j6y_A 20 AELTKTSLYQAQKFSRKTIEHQIPPEEIISIHRKVLKEL--YPS 61 (111)
T ss_dssp HHCCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH--CTT
T ss_pred HcccHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh--CCC
Confidence 334443 3333 78865 788999999999999999998 554
No 22
>4hyz_A Uncharacterized protein; PF13026 family protein, DUF3887, structural genomics, joint for structural genomics, JCSG; 2.25A {Ruminococcus gnavus}
Probab=40.90 E-value=35 Score=26.20 Aligned_cols=51 Identities=20% Similarity=0.356 Sum_probs=43.4
Q ss_pred CCCHHhhhcccccccHHHHHHhhcccChHHHHhhHHHHHHcCCCcchHHHHHHHHHH
Q 025111 149 QLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHA 205 (257)
Q Consensus 149 ~~~ae~~~~rI~G~hVa~Ym~~L~eed~e~ykkqFS~yik~gi~p~~~e~~y~~~~~ 205 (257)
.||.+.+.+ +-.+++..|.++|=+.-...||.=++..++++.|+ +++.+-.
T Consensus 10 ~fde~~v~~-----~A~~~I~~l~~~dy~~i~~~~~~~lk~~Lt~e~l~-~~~~~~~ 60 (114)
T 4hyz_A 10 GFDKETVRK-----QAMEDIEIAQSKDYESWKSRFTKDLQSSLTEESYD-SYLKILE 60 (114)
T ss_dssp TCCHHHHHH-----HHHHHHHHHHTTCHHHHHTTBCHHHHTTCCHHHHH-HHHHHHH
T ss_pred hhhHHHHHH-----HHHHHHHHHHhCCHHHHHHHhCHHHHhhCCHHHHH-HHHHHHH
Confidence 477776665 66689999999999988899999999999999999 8887544
No 23
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=39.48 E-value=18 Score=27.82 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHHHHHHHHhhhhccc
Q 025111 231 KLTYEERKAKLVERLNALNSAVDEE 255 (257)
Q Consensus 231 Klt~~qrk~rv~~K~~~~~~~~~~~ 255 (257)
-|..+||+.++++|+..+...+++|
T Consensus 10 ~LPpeqRkkkL~~Ki~el~~ei~ke 34 (98)
T 2ke4_A 10 HLPPEQQRKRLQQQLEERSRELQKE 34 (98)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999887765
No 24
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=37.96 E-value=27 Score=21.03 Aligned_cols=16 Identities=25% Similarity=0.480 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHh
Q 025111 234 YEERKAKLVERLNALN 249 (257)
Q Consensus 234 ~~qrk~rv~~K~~~~~ 249 (257)
++|+-+.+.||++++.
T Consensus 12 leqkiaalkqkiaslk 27 (28)
T 3ra3_A 12 LEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5788888888888765
No 25
>2xrh_A Protein HP0721; unknown function; 1.50A {Helicobacter pylori}
Probab=37.20 E-value=39 Score=26.38 Aligned_cols=42 Identities=26% Similarity=0.456 Sum_probs=34.9
Q ss_pred HHhhcccChHHHHhhHHHHHHc---CCCcchHHHHHHHHHHHHhc
Q 025111 168 MSTLMEDEPEKYQSHFTEYIKK---GIDADGLEALYKKVHAAIRA 209 (257)
Q Consensus 168 m~~L~eed~e~ykkqFS~yik~---gi~p~~~e~~y~~~~~~I~~ 209 (257)
|..|.+++-..|.+||..+... .+++.+..++=+++++++.+
T Consensus 42 ~~~M~~k~~k~F~~~~~~~~~kN~~kMS~ke~~~~r~aI~eal~k 86 (100)
T 2xrh_A 42 MEKMPEDKRKAFHKQLHEYATKNTDKMTVADFEARQKAVKEALKK 86 (100)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 6678888889999999988775 57788988888888888854
No 26
>1jeb_A Hemoglobin zeta chain; oxygen transport, oxygen storage/transport complex; HET: HEM; 2.10A {Homo sapiens} SCOP: a.1.1.2
Probab=37.03 E-value=42 Score=25.94 Aligned_cols=71 Identities=15% Similarity=0.189 Sum_probs=49.4
Q ss_pred cCCCCccCCcCCCCCCCCHH--hhhcccccccHHHHHHhhcccChHHHHhhHHHHHH--cCCCcchHHHHHHHHHHHHhc
Q 025111 134 PHSDKRFAGFSKDGKQLDAE--VHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIK--KGIDADGLEALYKKVHAAIRA 209 (257)
Q Consensus 134 Phs~~~fp~~~~~~k~~~ae--~~~~rI~G~hVa~Ym~~L~eed~e~ykkqFS~yik--~gi~p~~~e~~y~~~~~~I~~ 209 (257)
|.--.-||.+|... -|++ .|..++++ -|..++..|. |.+.+-.+.+.--. .||+|++++.+-+-....|.+
T Consensus 38 P~~k~~F~~~~~~~--~s~~~~~h~~~v~~-~l~~~v~~ld--~l~~~l~~L~~~H~~k~~V~p~~f~~~~~~ll~~l~~ 112 (142)
T 1jeb_A 38 PQTKTYFPHFDLHP--GSAQLRAHGSKVVA-AVGDAVKSID--DIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAA 112 (142)
T ss_dssp GGGGGGCTTSCCST--TCHHHHHHHHHHHH-HHHHHHHTTT--CHHHHTHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHCCCCC--CCHHHHHHHHHHHH-HHHHHHHhHh--hHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHH
Confidence 66666788775543 2333 56666655 5667787774 46667777776653 699999999888888888865
No 27
>2w72_C Human hemoglobin A; iron, heme, glycation, transport, acetylation, phosphoprotein, packing defects, disease mutation, distal site point mutation; HET: HEM SO4; 1.07A {Homo sapiens} PDB: 1j7s_A* 1qi8_A* 1j7y_A* 1o1i_A* 2w72_A* 1bzz_A* 1c7b_A* 1j7w_A* 1o1k_A* 1o1o_A* 1y0c_A* 1ydz_A* 3ia3_B* 1ird_A* 1a00_A* 1a0u_A* 1a0z_A* 1a3n_A* 1a9w_A* 1b86_A* ...
Probab=35.16 E-value=46 Score=25.68 Aligned_cols=72 Identities=13% Similarity=0.138 Sum_probs=49.6
Q ss_pred cCCCCccCCcCCCCCCCCHH--hhhcccccccHHHHHHhhcccChHHHHhhHHHHHH--cCCCcchHHHHHHHHHHHHhc
Q 025111 134 PHSDKRFAGFSKDGKQLDAE--VHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIK--KGIDADGLEALYKKVHAAIRA 209 (257)
Q Consensus 134 Phs~~~fp~~~~~~k~~~ae--~~~~rI~G~hVa~Ym~~L~eed~e~ykkqFS~yik--~gi~p~~~e~~y~~~~~~I~~ 209 (257)
|.--.-||.+|..+ -|++ .|..++++ -|..++..|. |.+.+-.+.+.--. .||+|++++.+-+-....|.+
T Consensus 37 P~~~~~F~~~d~~~--~~~~~~~h~~~v~~-al~~~v~~ld--~l~~~l~~L~~~H~~~~gV~p~~f~~~~~~Ll~~l~~ 111 (141)
T 2w72_C 37 PTTKTYFPHFDLSH--GSAQVKGQGKKVAD-ALTNAVAHVD--DMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAA 111 (141)
T ss_dssp GGGGGGCTTSCCST--TCHHHHHHHHHHHH-HHHHHHHTTT--SHHHHTHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhCCCCC--CCHHHHHHHHHHHH-HHHHHHHhHh--hhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 55566788775544 3444 66667665 4566777774 56666666775553 599999999988888888866
Q ss_pred C
Q 025111 210 D 210 (257)
Q Consensus 210 ~ 210 (257)
-
T Consensus 112 ~ 112 (141)
T 2w72_C 112 H 112 (141)
T ss_dssp H
T ss_pred H
Confidence 4
No 28
>1y6z_A Heat shock protein, putative; chaperone, structural genomics, structural genom consortium, SGC, unknown function; 1.88A {Plasmodium falciparum}
Probab=32.14 E-value=12 Score=33.65 Aligned_cols=72 Identities=21% Similarity=0.253 Sum_probs=41.7
Q ss_pred cccccccccccccccccCCCCccCCcCCCCCCCCHHhhhcccccccHHHHHHhhcccChHHHHh---hHHHHHHcCCCcc
Q 025111 118 EYEGNVEGALDGGLDIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQS---HFTEYIKKGIDAD 194 (257)
Q Consensus 118 ~YhG~vkGArD~GL~IPhs~~~fp~~~~~~k~~~ae~~~~rI~G~hVa~Ym~~L~eed~e~ykk---qFS~yik~gi~p~ 194 (257)
.|-.=|+|.+|.- ++|-+-+|=-=. +++- -.++++. .+.-|.++.+.|.++|+|.|.+ +|+..||.|+-.|
T Consensus 92 ~yL~FvkGVVDS~-DLpLNvSRE~LQ--~~~~--l~~Irk~-l~kkvl~~l~~la~~d~e~y~kf~~~fg~~lK~G~~eD 165 (263)
T 1y6z_A 92 RWLTFLRGIVDSE-NLPLNVGREILQ--KSKM--LSIINKR-IVLKSISMMKGLKETGGDKWTKFLNTFGKYLKIGVVED 165 (263)
T ss_dssp GGGTTCEEEEEEC-C--------------CTT--HHHHHHH-HHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHeeccccc-cCCCccchhhhc--ccHH--HHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHhHHHccccccC
Confidence 3334445777763 555544441110 1111 2344444 4677888999999999999886 8999999998755
Q ss_pred h
Q 025111 195 G 195 (257)
Q Consensus 195 ~ 195 (257)
.
T Consensus 166 ~ 166 (263)
T 1y6z_A 166 K 166 (263)
T ss_dssp G
T ss_pred H
Confidence 3
No 29
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli}
Probab=31.71 E-value=15 Score=33.66 Aligned_cols=36 Identities=31% Similarity=0.445 Sum_probs=30.3
Q ss_pred ccccHHHHHHhhcccChHHHHh---hHHHHHHcCCCcch
Q 025111 160 YGGHVAAYMSTLMEDEPEKYQS---HFTEYIKKGIDADG 195 (257)
Q Consensus 160 ~G~hVa~Ym~~L~eed~e~ykk---qFS~yik~gi~p~~ 195 (257)
.+.-|.++...|.++|+|.|++ +|+..||.|+-.|.
T Consensus 124 l~kKvl~~L~~la~~d~e~Y~kF~~~fg~~lK~Gi~eD~ 162 (303)
T 2gq0_A 124 LTKRVLQMLEKLAKDDAEKYQTFWQQFGLVLKEGPAEDF 162 (303)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTHHHHCG
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhhhcCH
Confidence 5677889999999999998887 89999999986543
No 30
>2zs0_A Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_A* 2d2m_A* 2zfo_A* 2zs1_A*
Probab=29.13 E-value=78 Score=24.40 Aligned_cols=72 Identities=19% Similarity=0.321 Sum_probs=45.1
Q ss_pred cCCCCccCCcCCCCCCCCHH--hhhcccccccHHHHHHhhcccChHHHHhhHHHH----HHcCCCcchHHHHHHHHHHHH
Q 025111 134 PHSDKRFAGFSKDGKQLDAE--VHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEY----IKKGIDADGLEALYKKVHAAI 207 (257)
Q Consensus 134 Phs~~~fp~~~~~~k~~~ae--~~~~rI~G~hVa~Ym~~L~eed~e~ykkqFS~y----ik~gi~p~~~e~~y~~~~~~I 207 (257)
|.--..||.++..+.. |++ .|..++++ -|..++..| +|++.....+++. ...||+|++++.+-+-....|
T Consensus 40 P~~k~~F~~~~~~~~~-~~~~~~h~~~v~~-al~~~v~~l--d~~~~l~~~l~~L~~~H~~~gV~p~~f~~~~~~Ll~~l 115 (140)
T 2zs0_A 40 GSSRALFSGVGVDDMN-SAAFTAHCLRVTG-ALNRLISQL--DQQATINADLAHLAGQHASRNLDASNFAAMGQAVMSVV 115 (140)
T ss_dssp GGGGGGGGGGTTTSTT-SHHHHHHHHHHHH-HHHHHHHTT--TCHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHG
T ss_pred HHHHHhhhhcCCCCCC-CHHHHHHHHHHHH-HHHHHHHHc--CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 5555677765422211 444 46667666 566788887 4666554444332 334999999998888877777
Q ss_pred hc
Q 025111 208 RA 209 (257)
Q Consensus 208 ~~ 209 (257)
.+
T Consensus 116 ~~ 117 (140)
T 2zs0_A 116 PT 117 (140)
T ss_dssp GG
T ss_pred HH
Confidence 65
No 31
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=29.03 E-value=31 Score=33.97 Aligned_cols=47 Identities=28% Similarity=0.388 Sum_probs=34.6
Q ss_pred ccccHHHHHHhhcccChHHHHh---hHHHHHHcCCCcchHHHHHHHHHHHHh
Q 025111 160 YGGHVAAYMSTLMEDEPEKYQS---HFTEYIKKGIDADGLEALYKKVHAAIR 208 (257)
Q Consensus 160 ~G~hVa~Ym~~L~eed~e~ykk---qFS~yik~gi~p~~~e~~y~~~~~~I~ 208 (257)
.+.-|.++...|.++|+|.|++ +|+..||.|+--|. ...++...-+|
T Consensus 352 l~kkv~~~l~~l~~~d~e~y~~f~~~f~~~lK~G~~~D~--~~~~~l~~ll~ 401 (559)
T 1y4s_A 352 LTKRVLQMLEKLAKDDAEKYQTFWQQFGLVLKEGPAEDF--ANQEAIAKLLR 401 (559)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTSTTTCG--GGHHHHHTTCE
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhHHhhhhhccCH--HHHHHHHHhhE
Confidence 3566888999999999998887 89999999998664 23444333333
No 32
>3ubc_A Hemoglobin-like flavoprotein; oxygen-bound, autoxidation, nanotemplate, langmuir-blodgett, films, oxygen transport; HET: HEM; 1.65A {Methylacidiphilum infernorum V4} PDB: 3ubv_A* 3s1i_A* 3s1j_A*
Probab=26.31 E-value=97 Score=23.30 Aligned_cols=65 Identities=8% Similarity=0.067 Sum_probs=43.0
Q ss_pred cCCCCccCCcCCCCCCCCHHhhhcccccccHHHHHHhhcccChHHHH---hhHHH-HHHcCCCcchHHHHHHHHHHHHhc
Q 025111 134 PHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQ---SHFTE-YIKKGIDADGLEALYKKVHAAIRA 209 (257)
Q Consensus 134 Phs~~~fp~~~~~~k~~~ae~~~~rI~G~hVa~Ym~~L~eed~e~yk---kqFS~-yik~gi~p~~~e~~y~~~~~~I~~ 209 (257)
|.--..||. |-..|..++++ -|..++..|. |++... .+.+. ..+.||+|++++.+-+--...|++
T Consensus 36 P~~k~~F~~--------d~~~h~~~l~~-al~~~v~~ld--~~~~l~~~l~~L~~~H~~~gV~p~~f~~~~~~Ll~~l~~ 104 (131)
T 3ubc_A 36 PTVSVLFQN--------PISSQSRKLMQ-VLGILVQGID--NLEGLIPTLQDLGRRHKQYGVVDSHYPLVGDCLLKSIQE 104 (131)
T ss_dssp GGGGGGCCS--------CHHHHHHHHHH-HHHHHHHTGG--GGGGGHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHccc--------cHHHHHHHHHH-HHHHHHHhCC--ChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 555566775 34567777665 6777888883 555433 33332 346799999999888877777765
No 33
>3d1k_A Hemoglobin subunit alpha-1; antarctic FISH hemoglobin, intermediate R/T quaternary structure, oxidation pathway, heme, iron, metal-binding; HET: HEM; 1.25A {Dusky notothen} SCOP: a.1.1.2 PDB: 2aa1_A* 1t1n_A* 1la6_A* 3nfe_A* 3ng6_A* 2h8f_A* 1pbx_A* 1s5x_A* 1s5y_A* 1hbh_A* 2h8d_A* 2peg_A* 3gkv_A* 3gqg_A* 1v4x_A* 1v4u_A* 1v4w_A*
Probab=26.28 E-value=87 Score=24.18 Aligned_cols=72 Identities=15% Similarity=0.193 Sum_probs=47.8
Q ss_pred cCCCCccCCc-CCCCCCCCHH--hhhcccccccHHHHHHhhcccChHHHHhhHHHHHH--cCCCcchHHHHHHHHHHHHh
Q 025111 134 PHSDKRFAGF-SKDGKQLDAE--VHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIK--KGIDADGLEALYKKVHAAIR 208 (257)
Q Consensus 134 Phs~~~fp~~-~~~~k~~~ae--~~~~rI~G~hVa~Ym~~L~eed~e~ykkqFS~yik--~gi~p~~~e~~y~~~~~~I~ 208 (257)
|....-||.+ |... -|++ .|..++++ -|.+++..|. |-+.+-.+.+.-.. .||+|++++.+-+-....|.
T Consensus 37 P~~~~~F~~~~~~~~--~s~~~~~h~~~v~~-al~~~v~~ld--~l~~~l~~L~~~H~~~~~V~p~~f~~~~~~ll~~l~ 111 (142)
T 3d1k_A 37 PQTKIYFSHWPDVTP--GSPNIKAHGKKVMG-GIALAVSKID--DLKTGLMELSEQHAYKLRVDPSNFKILNHCILVVIS 111 (142)
T ss_dssp GGGGGGGTTSSCCST--TCHHHHHHHHHHHH-HHHHHHHTTT--CHHHHHHHHHHHHHHTSCCCGGGHHHHHHHHHHHHH
T ss_pred ccHHHHHHHhCCCCC--CCHHHHHHHHHHHH-HHHHHHHhHH--HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 5555677765 3222 2333 56667666 4667888874 35556666665444 59999999998888888886
Q ss_pred cC
Q 025111 209 AD 210 (257)
Q Consensus 209 ~~ 210 (257)
+-
T Consensus 112 ~~ 113 (142)
T 3d1k_A 112 TM 113 (142)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 34
>2zs0_C Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_C* 2d2m_C* 2zfo_C* 2zs1_C*
Probab=26.22 E-value=86 Score=24.36 Aligned_cols=72 Identities=17% Similarity=0.329 Sum_probs=43.6
Q ss_pred cCCCCccCCcCCCCCCCCHH--hhhcccccccHHHHHHhhcccChHHHHh---hHHHHHH-c-CCCcchHHHHHHHHHHH
Q 025111 134 PHSDKRFAGFSKDGKQLDAE--VHRKYIYGGHVAAYMSTLMEDEPEKYQS---HFTEYIK-K-GIDADGLEALYKKVHAA 206 (257)
Q Consensus 134 Phs~~~fp~~~~~~k~~~ae--~~~~rI~G~hVa~Ym~~L~eed~e~ykk---qFS~yik-~-gi~p~~~e~~y~~~~~~ 206 (257)
|.--..||.++..+. -|++ .|..+|++. |..++..|. |++.... +.+.--. . ||+|++++.+-+-....
T Consensus 44 P~~k~~F~~~~~~~~-~~~~~~~h~~~v~~~-l~~~v~~ld--d~~~l~~~l~~L~~~H~~~~gV~p~~f~~~~~~Ll~~ 119 (147)
T 2zs0_C 44 AAAQGLFSGVSADNP-DSADFRAHCVRVVNG-LDVAINMLN--DPAVLNEQLAHLSAQHQARAGVAAAHFDVMAEAFAEV 119 (147)
T ss_dssp GGGGGGGGGGTTTST-TSHHHHHHHHHHHHH-HHHHHHTTT--CHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhccccCccCC-CCHHHHHHHHHHHHH-HHHHHHHcC--CHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHH
Confidence 555556665532221 1443 455666663 666777774 6554444 4444333 4 99999999888888888
Q ss_pred Hhc
Q 025111 207 IRA 209 (257)
Q Consensus 207 I~~ 209 (257)
|.+
T Consensus 120 l~~ 122 (147)
T 2zs0_C 120 MPQ 122 (147)
T ss_dssp GGG
T ss_pred HHH
Confidence 755
No 35
>1x9f_D Globin C, hemoglobin chain D1, globin III, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_D*
Probab=25.40 E-value=1e+02 Score=23.57 Aligned_cols=72 Identities=13% Similarity=0.311 Sum_probs=45.0
Q ss_pred cCCCCccCCcCCCCCCCCH--HhhhcccccccHHHHHHhhcccChHHHHhhHHHH----HHcCCCcchHHHHHHHHHHHH
Q 025111 134 PHSDKRFAGFSKDGKQLDA--EVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEY----IKKGIDADGLEALYKKVHAAI 207 (257)
Q Consensus 134 Phs~~~fp~~~~~~k~~~a--e~~~~rI~G~hVa~Ym~~L~eed~e~ykkqFS~y----ik~gi~p~~~e~~y~~~~~~I 207 (257)
|.--..||.++..+ .-|+ ..|..++++. |..++..|. |++.....+++. ...||+|++++.+-+-....|
T Consensus 40 P~~k~~F~~~~~~~-~~s~~~~~h~~~v~~~-l~~~v~~ld--~~~~l~~~l~~L~~~H~~~gV~p~~f~~~~~~Ll~~l 115 (140)
T 1x9f_D 40 PEIKAPFSRVRGDN-IYSPEFGAHSQRVLSG-LDITISMLD--TPDMLAAQLAHLKVQHVERNLKPEFFDIFLKHLLHVL 115 (140)
T ss_dssp GGGGGGGGGGTTTC-TTSHHHHHHHHHHHHH-HHHHHHTTT--CHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhcCCCC-CCCHHHHHHHHHHHHH-HHHHHHHcC--CHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 55556677653222 2244 3566666663 677888774 666555444432 234999999998888888877
Q ss_pred hc
Q 025111 208 RA 209 (257)
Q Consensus 208 ~~ 209 (257)
++
T Consensus 116 ~~ 117 (140)
T 1x9f_D 116 GD 117 (140)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 36
>1wmu_A Hemoglobin D alpha chain; hemoglobin D, reptilia, the aldabra giant tortoise, geochelone gigantea, oxygen storage/transport complex; HET: HEM; 1.65A {Dipsochelys dussumieri} SCOP: a.1.1.2 PDB: 1v75_A* 2z6n_A* 1hbr_A*
Probab=24.67 E-value=78 Score=24.37 Aligned_cols=71 Identities=14% Similarity=0.183 Sum_probs=47.2
Q ss_pred cCCCCccCCcCCCCCCCCHH--hhhcccccccHHHHHHhhcccChHHHHhhHHHHHH--cCCCcchHHHHHHHHHHHHhc
Q 025111 134 PHSDKRFAGFSKDGKQLDAE--VHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIK--KGIDADGLEALYKKVHAAIRA 209 (257)
Q Consensus 134 Phs~~~fp~~~~~~k~~~ae--~~~~rI~G~hVa~Ym~~L~eed~e~ykkqFS~yik--~gi~p~~~e~~y~~~~~~I~~ 209 (257)
|.--.-||.+|.+. -|++ .|..++++ -|..++..|. |.+.+-.+.+.--. .||+|++++.+-+-....|.+
T Consensus 37 P~~k~~F~~~~~~~--~s~~~~~h~~~v~~-al~~~v~~ld--~l~~~l~~L~~~H~~~~~V~p~~f~~~~~~ll~~l~~ 111 (141)
T 1wmu_A 37 PSTKTYFPHFDLHH--DSEQIRHHGKKVVG-ALGDAVKHID--NLSATLSELSNLHAYNLRVDPVNFKLLSHCFQVVLGA 111 (141)
T ss_dssp GGGGGGCTTSCCST--TCHHHHHHHHHHHH-HHHHHHHTTT--SHHHHTHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHhCCCCC--CCHHHHHHHHHHHH-HHHHHHHhHh--hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 66667788775543 2333 56666655 4666777774 45566666665444 599999999888877777765
No 37
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural genomics consortium, SGC, HE protein, chaperone; 2.28A {Homo sapiens} SCOP: d.14.1.8
Probab=23.71 E-value=31 Score=31.12 Aligned_cols=34 Identities=26% Similarity=0.462 Sum_probs=27.8
Q ss_pred ccccHHHHHHhhcccChHHHHh---hHHHHHHcCCCcc
Q 025111 160 YGGHVAAYMSTLMEDEPEKYQS---HFTEYIKKGIDAD 194 (257)
Q Consensus 160 ~G~hVa~Ym~~L~eed~e~ykk---qFS~yik~gi~p~ 194 (257)
.+.-|.+....|. +|+|.|++ +|+..||.|+--|
T Consensus 126 i~kkvl~~l~~la-~d~e~Y~~f~~~fg~~lK~G~~eD 162 (268)
T 3pry_A 126 IVKKCLELFSELA-EDKENYKKFYEAFSKNLKLGIHED 162 (268)
T ss_dssp HHHHHHHHHHHHH-TSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHhHhhCC
Confidence 4567888888898 89998886 8999999998544
No 38
>3bom_A Hemoglobin subunit alpha-4; FISH hemoglobin, structural genomics community request, protein structure initiative, PSI-2; HET: HEM; 1.35A {Oncorhynchus mykiss} PDB: 2r1h_A*
Probab=23.25 E-value=94 Score=24.06 Aligned_cols=72 Identities=15% Similarity=0.201 Sum_probs=47.7
Q ss_pred cCCCCccCCc-CCCCCCCCHH--hhhcccccccHHHHHHhhcccChHHHHhhHHHHHH--cCCCcchHHHHHHHHHHHHh
Q 025111 134 PHSDKRFAGF-SKDGKQLDAE--VHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIK--KGIDADGLEALYKKVHAAIR 208 (257)
Q Consensus 134 Phs~~~fp~~-~~~~k~~~ae--~~~~rI~G~hVa~Ym~~L~eed~e~ykkqFS~yik--~gi~p~~~e~~y~~~~~~I~ 208 (257)
|.-..-||.+ |... -|++ .|..++++ -|.+++..|. |-+.+-.+.+.--. .||+|++++.+-+-....|.
T Consensus 38 P~~~~~F~~~~~~~~--~s~~~~~h~~~v~~-al~~~v~~ld--~l~~~l~~L~~~H~~~~~V~p~~f~~~~~~Ll~~l~ 112 (143)
T 3bom_A 38 PQTKAYFSHWASVAP--GSAPVKKHGITIMN-QIDDCVGHMD--DLFGFLTKLSELHATKLRVDPTNFKILAHNLIVVIA 112 (143)
T ss_dssp GGGGGGCTTSSCCST--TCHHHHHHHHHHHH-HHHHHHTTTT--CHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCCC--CCHHHHHHHHHHHH-HHHHHHHhHH--hHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHH
Confidence 5556677765 3222 2333 56667666 4667788774 45556666665544 59999999988888888886
Q ss_pred cC
Q 025111 209 AD 210 (257)
Q Consensus 209 ~~ 210 (257)
+-
T Consensus 113 ~~ 114 (143)
T 3bom_A 113 AY 114 (143)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 39
>2zs0_B Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_B* 2d2m_B* 2zfo_B* 2zs1_B*
Probab=22.60 E-value=1.5e+02 Score=22.64 Aligned_cols=72 Identities=19% Similarity=0.285 Sum_probs=44.0
Q ss_pred cCCCCccCCcCCCCCCCCHH--hhhcccccccHHHHHHhhcccChHHHHhhHHH---H-HHcCCCcchHHHHHHHHHHHH
Q 025111 134 PHSDKRFAGFSKDGKQLDAE--VHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTE---Y-IKKGIDADGLEALYKKVHAAI 207 (257)
Q Consensus 134 Phs~~~fp~~~~~~k~~~ae--~~~~rI~G~hVa~Ym~~L~eed~e~ykkqFS~---y-ik~gi~p~~~e~~y~~~~~~I 207 (257)
|.--..||.++..+. -|++ .|..+|++ -|..++..|. |++.....+++ - ...||+|++++.+-+-....|
T Consensus 40 P~~k~~F~~~~~~~~-~s~~~~~h~~~v~~-~l~~~v~~ld--d~~~l~~~l~~L~~~H~~~gV~p~~f~~~~~~Ll~~l 115 (142)
T 2zs0_B 40 PDARGLFSRVNGNDI-DSSEFQAHSLRVLG-GLDMCVASLD--DVPVLNALLARLNSQHDSRGIPAAGYPAFVASAISAV 115 (142)
T ss_dssp GGGGGGGGGGTTTST-TSHHHHHHHHHHHH-HHHHHHHTTT--CHHHHHHHHHHHHHHHTTSCCCTTHHHHHHHHHHHHH
T ss_pred hHHHHhhhhccCCCC-CCHHHHHHHHHHHH-HHHHHHHHcC--CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 555567776542221 2444 56666665 3556677773 66555444433 2 234999999998888888877
Q ss_pred hc
Q 025111 208 RA 209 (257)
Q Consensus 208 ~~ 209 (257)
.+
T Consensus 116 ~~ 117 (142)
T 2zs0_B 116 RA 117 (142)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 40
>1x9f_A Globin IV, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_A*
Probab=22.22 E-value=1e+02 Score=24.07 Aligned_cols=71 Identities=15% Similarity=0.243 Sum_probs=44.6
Q ss_pred cCCCCccCCc-CCCCCCCCHH--hhhcccccccHHHHHHhhcccChHHHHhh---HHHHH-Hc-CCCcchHHHHHHHHHH
Q 025111 134 PHSDKRFAGF-SKDGKQLDAE--VHRKYIYGGHVAAYMSTLMEDEPEKYQSH---FTEYI-KK-GIDADGLEALYKKVHA 205 (257)
Q Consensus 134 Phs~~~fp~~-~~~~k~~~ae--~~~~rI~G~hVa~Ym~~L~eed~e~ykkq---FS~yi-k~-gi~p~~~e~~y~~~~~ 205 (257)
|.--.-||.+ |... -|++ .|..++++. |..++..|. |++..... .+.-- .. ||+|++++.+-+-...
T Consensus 47 P~~k~~F~~~~~~~~--~n~~~~~h~~~v~~a-l~~~v~~ld--d~~~l~~~l~~L~~~H~~~lgV~p~~f~~~~~~ll~ 121 (151)
T 1x9f_A 47 PTSKALFERVKIDEP--ESGEFKSHLVRVANG-LKLLINLLD--DTLVLQSHLGHLADQHIQRKGVTKEYFRGIGEAFAR 121 (151)
T ss_dssp GGGGGGGTTTTTTST--TSSHHHHHHHHHHHH-HHHHHTTTT--CHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCCC--CCHHHHHHHHHHHHH-HHHHHHHcC--CHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHH
Confidence 5555567664 2111 1333 567777764 777888884 66655544 44333 33 9999999988888777
Q ss_pred HHhc
Q 025111 206 AIRA 209 (257)
Q Consensus 206 ~I~~ 209 (257)
.|.+
T Consensus 122 ~l~~ 125 (151)
T 1x9f_A 122 VLPQ 125 (151)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 41
>1yhu_D Hemoglobin B2 chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=22.15 E-value=1.4e+02 Score=23.23 Aligned_cols=72 Identities=17% Similarity=0.317 Sum_probs=44.6
Q ss_pred cCCCCccCCcCCCCCCCCH--HhhhcccccccHHHHHHhhcccChHHHHh---hHHHHHH-c-CCCcchHHHHHHHHHHH
Q 025111 134 PHSDKRFAGFSKDGKQLDA--EVHRKYIYGGHVAAYMSTLMEDEPEKYQS---HFTEYIK-K-GIDADGLEALYKKVHAA 206 (257)
Q Consensus 134 Phs~~~fp~~~~~~k~~~a--e~~~~rI~G~hVa~Ym~~L~eed~e~ykk---qFS~yik-~-gi~p~~~e~~y~~~~~~ 206 (257)
|.--..||.++..+. -|+ ..|..+|++. |..++..|. |++.... +.+.--. . ||+|++++.+-+-....
T Consensus 44 P~~k~~F~~~~~~~~-~~~~~~~h~~~v~~~-l~~~v~~ld--~~~~l~~~l~~L~~~H~~~~gV~p~~f~~~~~~Ll~~ 119 (149)
T 1yhu_D 44 PDAVGLFGAVKGDEV-NSNEFKAHCIRVVNG-LDSSIGLLS--DPATLNEQLSHLATQHKARSGVTKGGFSAIAQSFLRV 119 (149)
T ss_dssp GGGGGGGGGGTSSST-TSHHHHHHHHHHHHH-HHHHHHHTT--CHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCC-CCHHHHHHHHHHHHH-HHHHHHHCC--CHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHH
Confidence 555567776543221 244 3566666653 666777774 6655444 4443333 3 99999999888888888
Q ss_pred Hhc
Q 025111 207 IRA 209 (257)
Q Consensus 207 I~~ 209 (257)
|.+
T Consensus 120 l~~ 122 (149)
T 1yhu_D 120 MPQ 122 (149)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 42
>1gcv_B Hemoglobin; oxygen storage/transport complex; HET: HEM; 2.00A {Mustelus griseus} SCOP: a.1.1.2 PDB: 1gcw_B*
Probab=21.85 E-value=88 Score=24.33 Aligned_cols=69 Identities=9% Similarity=0.208 Sum_probs=47.1
Q ss_pred cCCCCccCCcCCCCCCCCHHhhhcccccccHHHHHHhhcccChHHHHhhHHHHHH--cCCCcchHHHHHHHHHHHHhc
Q 025111 134 PHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIK--KGIDADGLEALYKKVHAAIRA 209 (257)
Q Consensus 134 Phs~~~fp~~~~~~k~~~ae~~~~rI~G~hVa~Ym~~L~eed~e~ykkqFS~yik--~gi~p~~~e~~y~~~~~~I~~ 209 (257)
|..-.-||.+. .+++..|..++++. |.+++..|. |-+..-.+.|.--. .||+|++++-+-+-....|.+
T Consensus 36 P~~k~~F~~f~----d~~~~~h~~~v~~a-l~~~v~~ld--~l~~~l~~L~~~H~~k~~V~p~~f~~~~~~Ll~~l~~ 106 (136)
T 1gcv_B 36 PWTNRYFQKRT----DFRSSIHAGIVVGA-LQDAVKHMD--DVKTLFKDLSKKHADDLHVDPGSFHLLTDCIIVELAY 106 (136)
T ss_dssp GGGGGGTTTCT----TCCHHHHHHHHHHH-HHHHHHTTT--CHHHHTHHHHHHHHHTTCCCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHhhccc----CCCccHHHHHHHHH-HHHHHHhHh--hHHHHHHHHHHHhHHhhCCCHHHHHHHHHHHHHHHHH
Confidence 66666788651 22334888888874 777888885 35555566665544 599999998877777777754
No 43
>1c7c_A Protein (deoxyhemoglobin (alpha chain)); heme, oxygen delivery vehicle, blood substitute, oxygen storage/transport complex; HET: HEM; 1.80A {Homo sapiens} SCOP: a.1.1.2 a.1.1.2 PDB: 1aby_A* 1abw_A* 1o1p_A* 1c7d_A* 1o1j_A* 1o1l_A* 1o1n_A* 1o1m_A*
Probab=21.75 E-value=92 Score=27.01 Aligned_cols=72 Identities=14% Similarity=0.166 Sum_probs=50.5
Q ss_pred cCCCCccCCcCCCCCCCCHH--hhhcccccccHHHHHHhhcccChHHHHhhHHHHHH--cCCCcchHHHHHHHHHHHHhc
Q 025111 134 PHSDKRFAGFSKDGKQLDAE--VHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIK--KGIDADGLEALYKKVHAAIRA 209 (257)
Q Consensus 134 Phs~~~fp~~~~~~k~~~ae--~~~~rI~G~hVa~Ym~~L~eed~e~ykkqFS~yik--~gi~p~~~e~~y~~~~~~I~~ 209 (257)
|.--..||.+|..+ -|++ .|..++++. |.+++..|. |.+.+-.+.+.--. .||+|+.++-+-+--...|.+
T Consensus 37 P~~~~~F~~~~~~~--~n~~~~~h~~~v~~~-l~~~v~~ld--~l~~~l~~L~~~H~~~~gV~p~~f~~~~~~Ll~~l~~ 111 (283)
T 1c7c_A 37 PTTKTYFPHFDLSH--GSAQVKGHGKKVADA-LTNAVAHVD--DMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAA 111 (283)
T ss_dssp GGGGGGCTTSCCST--TCHHHHHHHHHHHHH-HHHHHHTGG--GHHHHTHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhCCCCC--CChHHHHHHHHHHHH-HHHHHHccc--CchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 66677888775543 3444 677777764 777888885 35555566665444 599999999888888888876
Q ss_pred C
Q 025111 210 D 210 (257)
Q Consensus 210 ~ 210 (257)
-
T Consensus 112 ~ 112 (283)
T 1c7c_A 112 H 112 (283)
T ss_dssp H
T ss_pred H
Confidence 3
No 44
>1c7c_A Protein (deoxyhemoglobin (alpha chain)); heme, oxygen delivery vehicle, blood substitute, oxygen storage/transport complex; HET: HEM; 1.80A {Homo sapiens} SCOP: a.1.1.2 a.1.1.2 PDB: 1aby_A* 1abw_A* 1o1p_A* 1c7d_A* 1o1j_A* 1o1l_A* 1o1n_A* 1o1m_A*
Probab=20.28 E-value=1e+02 Score=26.65 Aligned_cols=72 Identities=14% Similarity=0.160 Sum_probs=50.9
Q ss_pred cCCCCccCCcCCCCCCCCHH--hhhcccccccHHHHHHhhcccChHHHHhhHHHHHH--cCCCcchHHHHHHHHHHHHhc
Q 025111 134 PHSDKRFAGFSKDGKQLDAE--VHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIK--KGIDADGLEALYKKVHAAIRA 209 (257)
Q Consensus 134 Phs~~~fp~~~~~~k~~~ae--~~~~rI~G~hVa~Ym~~L~eed~e~ykkqFS~yik--~gi~p~~~e~~y~~~~~~I~~ 209 (257)
|.--.-||.+|... =|++ .|..++++ -|.+++..|. |.+.+-.+.+.--. .||+|++++.+-+-....|.+
T Consensus 179 P~~~~~F~~fd~~~--~n~~~~~h~~~v~~-al~~~v~~ld--dl~~~l~~L~~~H~~~~~V~p~~f~~~~~~ll~~l~~ 253 (283)
T 1c7c_A 179 PTTKTYFPHFDLSH--GSAQVKGHGKKVAD-ALTNAVAHVD--DMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAA 253 (283)
T ss_dssp GGGGGGCTTSCCST--TCHHHHHHHHHHHH-HHHHHHHTTT--SHHHHTHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhCCCCC--CChhHHHHHHHHHH-HHHHHHHhhh--hHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHH
Confidence 88888999875543 3344 56667665 4667888874 46666667776544 599999999888888888865
Q ss_pred C
Q 025111 210 D 210 (257)
Q Consensus 210 ~ 210 (257)
-
T Consensus 254 ~ 254 (283)
T 1c7c_A 254 H 254 (283)
T ss_dssp H
T ss_pred H
Confidence 3
Done!