Query 025112
Match_columns 257
No_of_seqs 156 out of 1460
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 03:59:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025112.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025112hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2anr_A Neuro-oncological ventr 100.0 2.4E-30 8.2E-35 214.6 13.6 166 47-222 3-178 (178)
2 3krm_A Insulin-like growth fac 100.0 2.5E-29 8.7E-34 205.5 14.2 157 50-223 3-160 (163)
3 2jzx_A Poly(RC)-binding protei 100.0 3.8E-29 1.3E-33 203.9 11.0 159 47-220 2-160 (160)
4 2jvz_A KH type-splicing, FAR u 100.0 3.5E-28 1.2E-32 198.6 14.2 157 50-219 2-160 (164)
5 1j4w_A FUSE binding protein; s 100.0 4.9E-28 1.7E-32 200.0 13.2 160 49-217 2-174 (174)
6 2qnd_A FMR1 protein; KH domain 99.9 4.1E-21 1.4E-25 154.0 11.9 136 49-219 3-142 (144)
7 2e3u_A PH-DIM2P, hypothetical 99.8 5E-20 1.7E-24 157.0 9.7 157 49-228 33-200 (219)
8 3n89_A Defective in GERM LINE 99.8 2.2E-19 7.4E-24 163.3 13.0 166 45-218 25-260 (376)
9 1tua_A Hypothetical protein AP 99.7 8.5E-17 2.9E-21 134.0 12.0 149 51-222 5-163 (191)
10 2axy_A Poly(RC)-binding protei 99.6 4.8E-16 1.7E-20 110.2 7.4 70 142-220 4-73 (73)
11 1dtj_A RNA-binding neurooncolo 99.6 1.3E-15 4.3E-20 108.8 8.6 72 143-219 3-75 (76)
12 2axy_A Poly(RC)-binding protei 99.6 5.7E-16 1.9E-20 109.9 5.4 71 47-124 2-72 (73)
13 1wvn_A Poly(RC)-binding protei 99.6 2.4E-15 8.2E-20 109.0 8.0 72 142-220 5-76 (82)
14 1zzk_A Heterogeneous nuclear r 99.6 4.1E-15 1.4E-19 107.7 9.2 72 142-220 6-77 (82)
15 2p2r_A Poly(RC)-binding protei 99.6 2.1E-15 7.3E-20 107.6 7.6 72 142-220 4-75 (76)
16 2p2r_A Poly(RC)-binding protei 99.6 1.2E-15 4.1E-20 109.0 5.4 73 48-125 3-75 (76)
17 2hh2_A KH-type splicing regula 99.6 4.1E-15 1.4E-19 113.1 8.6 94 144-245 8-102 (107)
18 1ec6_A RNA-binding protein NOV 99.6 3.7E-15 1.3E-19 109.2 7.3 73 143-220 3-76 (87)
19 2opv_A KHSRP protein; KH domai 99.6 1.1E-14 3.9E-19 106.1 9.5 72 143-219 14-85 (85)
20 1zzk_A Heterogeneous nuclear r 99.6 4.7E-15 1.6E-19 107.4 7.4 73 48-125 5-77 (82)
21 1wvn_A Poly(RC)-binding protei 99.6 3.6E-15 1.2E-19 108.0 6.0 73 48-125 4-76 (82)
22 2dgr_A Ring finger and KH doma 99.6 3.2E-15 1.1E-19 108.5 5.3 71 140-220 7-77 (83)
23 1x4n_A FAR upstream element bi 99.5 1.4E-14 4.6E-19 107.3 8.5 74 141-221 13-86 (92)
24 1x4m_A FAR upstream element bi 99.5 6.9E-15 2.3E-19 109.3 6.7 76 140-220 12-87 (94)
25 1j5k_A Heterogeneous nuclear r 99.5 9.5E-15 3.3E-19 107.4 7.0 72 142-220 13-84 (89)
26 2hh3_A KH-type splicing regula 99.5 2.5E-14 8.4E-19 108.6 8.2 72 143-221 11-82 (106)
27 1x4n_A FAR upstream element bi 99.5 1.7E-14 5.9E-19 106.7 7.0 74 48-126 13-86 (92)
28 1we8_A Tudor and KH domain con 99.5 2.3E-14 8E-19 108.4 7.7 77 141-222 13-89 (104)
29 1j5k_A Heterogeneous nuclear r 99.5 7.8E-15 2.7E-19 107.9 4.8 73 48-125 12-84 (89)
30 1dtj_A RNA-binding neurooncolo 99.5 1.5E-14 5E-19 103.2 5.8 71 49-124 2-75 (76)
31 1x4m_A FAR upstream element bi 99.5 4.2E-14 1.4E-18 105.0 8.1 77 45-126 10-88 (94)
32 2dgr_A Ring finger and KH doma 99.5 3.4E-14 1.2E-18 103.1 6.0 71 46-124 6-76 (83)
33 2ctm_A Vigilin; K homology typ 99.5 1.1E-13 3.9E-18 102.9 7.9 73 141-221 15-87 (95)
34 2ctl_A Vigilin; K homology typ 99.5 1.5E-13 5E-18 102.7 8.5 71 143-219 17-87 (97)
35 1ec6_A RNA-binding protein NOV 99.5 3.8E-14 1.3E-18 103.7 4.9 70 50-124 3-75 (87)
36 2opv_A KHSRP protein; KH domai 99.5 1.1E-13 3.6E-18 100.9 7.3 72 48-124 12-85 (85)
37 2hh3_A KH-type splicing regula 99.5 5.5E-14 1.9E-18 106.6 5.8 72 50-126 11-82 (106)
38 1vig_A Vigilin; RNA-binding pr 99.5 7.7E-14 2.6E-18 98.3 6.1 66 143-217 5-70 (71)
39 2cte_A Vigilin; K homology typ 99.4 1.4E-13 4.7E-18 102.2 6.8 74 141-223 15-88 (94)
40 2hh2_A KH-type splicing regula 99.4 1.5E-13 5.1E-18 104.4 5.8 70 51-125 8-80 (107)
41 1vig_A Vigilin; RNA-binding pr 99.4 1.9E-13 6.5E-18 96.2 5.8 67 48-121 3-69 (71)
42 1we8_A Tudor and KH domain con 99.4 2.8E-13 9.5E-18 102.4 6.0 73 48-125 13-87 (104)
43 2ctl_A Vigilin; K homology typ 99.4 4.1E-13 1.4E-17 100.2 6.3 73 48-125 15-88 (97)
44 2jvz_A KH type-splicing, FAR u 99.4 1.1E-12 3.8E-17 106.3 9.2 76 143-223 2-77 (164)
45 2ctk_A Vigilin; K homology typ 99.4 6.6E-13 2.2E-17 100.3 7.0 69 142-219 16-84 (104)
46 2anr_A Neuro-oncological ventr 99.4 8.1E-13 2.8E-17 108.8 8.2 79 141-224 4-83 (178)
47 2cte_A Vigilin; K homology typ 99.4 3.3E-13 1.1E-17 100.1 5.0 73 46-125 13-85 (94)
48 3krm_A Insulin-like growth fac 99.4 1.5E-12 5.1E-17 105.7 8.5 73 143-221 3-75 (163)
49 2ctf_A Vigilin; K homology typ 99.4 8.9E-14 3.1E-18 104.7 0.9 66 143-220 27-93 (102)
50 1j4w_A FUSE binding protein; s 99.3 1.7E-12 5.8E-17 106.6 7.5 73 142-221 2-74 (174)
51 2ctm_A Vigilin; K homology typ 99.3 2.7E-12 9.1E-17 95.4 6.6 75 45-125 12-86 (95)
52 2jzx_A Poly(RC)-binding protei 99.3 5E-12 1.7E-16 102.2 6.7 70 142-220 4-73 (160)
53 2ctk_A Vigilin; K homology typ 99.3 3.3E-12 1.1E-16 96.4 4.8 70 49-125 16-85 (104)
54 2ctj_A Vigilin; K homology typ 99.3 9.6E-12 3.3E-16 92.4 6.8 72 141-221 15-87 (95)
55 2ctf_A Vigilin; K homology typ 99.2 3.6E-11 1.2E-15 90.4 8.4 67 49-125 26-93 (102)
56 2ctj_A Vigilin; K homology typ 99.2 9.6E-12 3.3E-16 92.4 4.7 76 44-126 11-87 (95)
57 3n89_A Defective in GERM LINE 99.0 4.7E-10 1.6E-14 102.0 6.1 75 140-216 27-103 (376)
58 2cpq_A FragIle X mental retard 98.9 8.3E-10 2.8E-14 80.8 5.3 67 141-219 13-81 (91)
59 2qnd_A FMR1 protein; KH domain 98.9 1.4E-09 4.8E-14 86.6 4.8 69 51-124 68-142 (144)
60 2cpq_A FragIle X mental retard 98.8 2.2E-09 7.4E-14 78.6 4.6 53 46-103 11-64 (91)
61 1k1g_A SF1-BO isoform; splicin 98.7 3.7E-08 1.3E-12 77.1 9.1 78 142-219 6-99 (131)
62 1k1g_A SF1-BO isoform; splicin 98.7 2.2E-08 7.5E-13 78.4 7.3 73 48-124 5-99 (131)
63 2yqr_A KIAA0907 protein; struc 98.7 2.1E-08 7.2E-13 77.1 6.2 72 49-124 11-99 (119)
64 2yqr_A KIAA0907 protein; struc 98.6 7.7E-08 2.6E-12 74.0 7.6 77 143-219 12-99 (119)
65 2e3u_A PH-DIM2P, hypothetical 98.6 6.7E-08 2.3E-12 82.0 6.1 66 142-219 33-103 (219)
66 2bl5_A MGC83862 protein, quaki 98.5 1.6E-07 5.5E-12 74.0 6.6 75 50-124 2-101 (140)
67 1tua_A Hypothetical protein AP 98.4 5.4E-07 1.8E-11 74.8 6.9 69 144-224 5-78 (191)
68 2bl5_A MGC83862 protein, quaki 98.4 5.4E-07 1.9E-11 71.0 6.1 78 144-222 3-104 (140)
69 3u1k_A Polyribonucleotide nucl 98.3 5.2E-07 1.8E-11 87.4 6.6 93 108-217 536-629 (630)
70 2cxc_A NUSA; transcription ter 98.1 1.9E-06 6.6E-11 68.2 4.6 104 50-179 36-139 (144)
71 3v69_A Protein filia; RNA-bind 98.1 1.1E-05 3.7E-10 62.7 7.8 67 144-218 57-123 (140)
72 4aid_A Polyribonucleotide nucl 97.9 6.6E-06 2.2E-10 80.7 4.0 100 108-224 539-639 (726)
73 3u1k_A Polyribonucleotide nucl 97.8 5.3E-06 1.8E-10 80.4 2.4 63 49-121 566-628 (630)
74 3v69_A Protein filia; RNA-bind 97.5 0.00017 5.7E-09 56.0 6.5 67 50-122 56-122 (140)
75 2asb_A Transcription elongatio 97.3 3.7E-05 1.3E-09 66.0 -0.1 106 51-183 113-224 (251)
76 1k0r_A NUSA; two component arr 97.1 0.00043 1.5E-08 62.6 5.3 107 50-183 235-347 (366)
77 4aid_A Polyribonucleotide nucl 97.1 0.00012 4.2E-09 71.7 1.1 65 50-124 570-634 (726)
78 1hh2_P NUSA, N utilization sub 96.7 0.002 6.8E-08 57.9 5.7 96 59-181 245-341 (344)
79 3cdi_A Polynucleotide phosphor 96.7 0.00056 1.9E-08 67.2 2.1 99 108-223 529-628 (723)
80 1e3p_A Guanosine pentaphosphat 96.0 0.00048 1.6E-08 68.0 -2.7 92 108-217 568-660 (757)
81 3cdi_A Polynucleotide phosphor 94.7 0.0053 1.8E-07 60.4 0.0 64 49-122 559-622 (723)
82 1e3p_A Guanosine pentaphosphat 93.5 0.0055 1.9E-07 60.5 -2.6 46 52-103 600-645 (757)
83 2cxc_A NUSA; transcription ter 92.6 0.079 2.7E-06 41.6 3.2 38 143-180 36-73 (144)
84 2asb_A Transcription elongatio 90.5 0.22 7.4E-06 42.6 4.0 40 49-88 183-222 (251)
85 1hh2_P NUSA, N utilization sub 89.1 0.25 8.5E-06 44.2 3.4 41 47-87 300-340 (344)
86 1k0r_A NUSA; two component arr 88.0 0.31 1.1E-05 43.9 3.3 41 48-88 305-345 (366)
87 2pt7_G HP1451, hypothetical pr 86.4 0.35 1.2E-05 38.2 2.4 31 50-80 33-63 (152)
88 1wh9_A 40S ribosomal protein S 80.9 0.63 2.1E-05 33.5 1.6 28 51-78 36-63 (92)
89 1wh9_A 40S ribosomal protein S 75.2 1.2 4.3E-05 31.9 1.8 27 144-170 36-62 (92)
90 2pt7_G HP1451, hypothetical pr 72.6 1.8 6.2E-05 34.0 2.3 65 144-219 34-98 (152)
91 3gku_A Probable RNA-binding pr 63.2 2.2 7.7E-05 35.7 1.1 34 51-84 93-126 (225)
92 2ba0_A Archeal exosome RNA bin 62.2 24 0.00082 29.3 7.3 62 145-219 138-199 (229)
93 3u5c_D RP13, YS3, 40S ribosoma 56.0 4.2 0.00014 34.3 1.5 29 51-79 45-73 (240)
94 3j20_C 30S ribosomal protein S 55.3 4.1 0.00014 33.7 1.3 28 51-78 41-68 (210)
95 2xzm_C KH domain containing pr 54.3 5.4 0.00018 33.8 1.9 30 50-79 47-76 (243)
96 2z0s_A Probable exosome comple 53.5 35 0.0012 28.3 6.9 63 145-220 150-213 (235)
97 2jva_A Peptidyl-tRNA hydrolase 52.6 19 0.00065 26.4 4.5 57 66-124 24-97 (108)
98 3iz6_B 40S ribosomal protein S 51.6 4.3 0.00015 34.0 0.9 30 50-79 44-73 (227)
99 3iev_A GTP-binding protein ERA 49.5 7.9 0.00027 33.3 2.3 38 49-86 239-285 (308)
100 3iev_A GTP-binding protein ERA 48.0 8.8 0.0003 33.0 2.3 36 143-178 240-284 (308)
101 3iz6_B 40S ribosomal protein S 47.7 9.3 0.00032 31.9 2.3 28 143-170 44-71 (227)
102 3u5c_D RP13, YS3, 40S ribosoma 47.4 7.9 0.00027 32.6 1.9 27 144-170 45-71 (240)
103 3r8n_C 30S ribosomal protein S 47.4 4.4 0.00015 33.5 0.3 27 52-78 63-89 (206)
104 3j20_C 30S ribosomal protein S 46.7 7.9 0.00027 32.0 1.7 36 144-179 41-83 (210)
105 2xzm_C KH domain containing pr 46.6 9.8 0.00034 32.1 2.3 28 143-170 47-74 (243)
106 2zkq_c 40S ribosomal protein S 46.2 5 0.00017 33.9 0.4 30 50-79 44-73 (243)
107 1ytb_A Protein (tata binding p 44.9 1.2E+02 0.004 24.2 9.6 108 95-220 59-177 (180)
108 3i1m_C 30S ribosomal protein S 44.2 5.1 0.00017 33.7 0.2 28 51-78 63-90 (233)
109 3gku_A Probable RNA-binding pr 44.2 7.1 0.00024 32.6 1.1 67 144-219 93-159 (225)
110 2vqe_C 30S ribosomal protein S 43.2 7.8 0.00027 32.7 1.2 27 52-78 64-90 (239)
111 3bbn_C Ribosomal protein S3; s 42.1 6.8 0.00023 32.6 0.6 28 52-79 72-99 (218)
112 1rm1_A Tata-box binding protei 38.9 1.3E+02 0.0044 25.1 8.1 108 95-220 119-237 (240)
113 3r8n_C 30S ribosomal protein S 38.7 8.4 0.00029 31.7 0.7 35 144-178 62-100 (206)
114 4dh9_Y YAEJ; ribosome, YAEJ, r 38.3 42 0.0014 25.7 4.6 58 66-125 24-98 (140)
115 2zkq_c 40S ribosomal protein S 36.3 10 0.00035 32.0 0.8 29 143-171 44-72 (243)
116 3i1m_C 30S ribosomal protein S 36.0 9.6 0.00033 32.0 0.6 34 144-177 63-100 (233)
117 2vqe_C 30S ribosomal protein S 34.7 14 0.00048 31.1 1.4 28 144-171 63-90 (239)
118 1j26_A Immature colon carcinom 33.6 26 0.0009 25.8 2.6 31 94-124 75-105 (112)
119 1wf3_A GTP-binding protein; GT 33.2 8.6 0.0003 33.1 -0.1 33 146-178 233-274 (301)
120 3dhx_A Methionine import ATP-b 33.2 66 0.0023 22.9 4.8 51 162-215 35-87 (106)
121 1wf3_A GTP-binding protein; GT 33.1 8.9 0.0003 33.0 -0.1 34 53-86 233-275 (301)
122 1go3_E DNA-directed RNA polyme 33.0 27 0.00093 27.6 2.9 35 50-87 7-53 (187)
123 3bbn_C Ribosomal protein S3; s 30.9 13 0.00043 30.9 0.5 27 144-170 71-97 (218)
124 3eik_A Tata-box-binding protei 30.9 2.2E+02 0.0076 23.3 10.2 108 95-220 97-215 (218)
125 2ja9_A Exosome complex exonucl 21.2 84 0.0029 24.8 3.7 35 145-179 93-128 (175)
126 2kl8_A OR15; structural genomi 21.2 1.8E+02 0.0063 19.1 5.0 28 192-219 39-66 (85)
No 1
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.97 E-value=2.4e-30 Score=214.58 Aligned_cols=166 Identities=25% Similarity=0.387 Sum_probs=134.8
Q ss_pred CCCeEEEEEecCccccceeccCchhHHHHHhhhCceEEEccc---ccCCCccEEEeccCCCCchhhHHHHHHHHHHHHHh
Q 025112 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA---IARHEERVIIISSKDNDNVVSDAENALQQIAALIL 123 (257)
Q Consensus 47 ~~~~~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~---~~~~~ervv~I~G~~~~~~~~~~~~A~~~I~~~i~ 123 (257)
+++++++|+||.+.+|.||||+|++|++|+++|||+|+|++. .+++.+|+|+|+|..+ ++.+|..+|.+++.
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~-----~v~~A~~~I~~~~~ 77 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIE-----ALNAVHGFIAEKIR 77 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHH-----HHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHH-----HHHHHHHHHHHHHh
Confidence 567899999999999999999999999999999999999854 3568899999999843 78899999999987
Q ss_pred cCCCCCchhhh--h-----ccCCCcceEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceE
Q 025112 124 KDDDSNSEASK--V-----AAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRV 196 (257)
Q Consensus 124 ~~~~~~~~~~~--~-----~~~~~~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~ 196 (257)
+.......... . ........+.++.||.+++|+|||++|++|++|+++|||+|+|.+....+. +.++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~-----~~~~~ 152 (178)
T 2anr_A 78 EMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGIN-----LQNRV 152 (178)
T ss_dssp CCCCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC---------CCEEE
T ss_pred ccCCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCC-----CCceE
Confidence 65432111000 0 001123468899999999999999999999999999999999976433332 67899
Q ss_pred EEEEcCHHHHHHHHHHHHHHHhcCCC
Q 025112 197 VQISGDVPAVLNALVEIGNQLRENPP 222 (257)
Q Consensus 197 V~I~G~~~~v~~A~~~I~~~l~e~~~ 222 (257)
|+|+|++++|++|+++|.++|+++|+
T Consensus 153 v~I~G~~~~v~~A~~~I~~~i~e~p~ 178 (178)
T 2anr_A 153 VTVSGEPEQNRKAVELIIQKIQEDPQ 178 (178)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHSCCC
T ss_pred EEEEcCHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999874
No 2
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.96 E-value=2.5e-29 Score=205.49 Aligned_cols=157 Identities=23% Similarity=0.371 Sum_probs=132.0
Q ss_pred eEEEEEecCccccceeccCchhHHHHHhhhCceEEEccc-ccCCCccEEEeccCCCCchhhHHHHHHHHHHHHHhcCCCC
Q 025112 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA-IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDS 128 (257)
Q Consensus 50 ~~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~-~~~~~ervv~I~G~~~~~~~~~~~~A~~~I~~~i~~~~~~ 128 (257)
-+++|+||.+.+|.||||+|++||+|+++|||+|+|++. .+++.+|+|+|+|.+ ..+.+|..+|.+++.+....
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~-----e~v~~A~~~I~~~~~e~~~~ 77 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPP-----EAQFKAQGRIYGKLKEENFF 77 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECH-----HHHHHHHHHHHHHHHHTTSS
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCH-----HHHHHHHHHHHHHHhccccc
Confidence 478999999999999999999999999999999999975 567899999999974 37889999999998776322
Q ss_pred CchhhhhccCCCcceEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHH
Q 025112 129 NSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLN 208 (257)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~ 208 (257)
... .....+.++.||.+++|+|||++|++|++|++.|||+|.+.. +..|. ...++.|+|+|++++|++
T Consensus 78 ~~~-------~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~-~~~~~----~~~~~~v~I~G~~~~v~~ 145 (163)
T 3krm_A 78 GPK-------EEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPR-DQTPD----ENDQVIVKIIGHFYASQM 145 (163)
T ss_dssp CSS-------CCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCT-TCCCC----TTSEEEEEEEECHHHHHH
T ss_pred ccc-------cCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECC-CCCCC----CCCceEEEEEeCHHHHHH
Confidence 111 112357799999999999999999999999999999999854 44454 144569999999999999
Q ss_pred HHHHHHHHHhcCCCC
Q 025112 209 ALVEIGNQLRENPPR 223 (257)
Q Consensus 209 A~~~I~~~l~e~~~~ 223 (257)
|+.+|.+++++..++
T Consensus 146 A~~~I~~~i~~~~~~ 160 (163)
T 3krm_A 146 AQRKIRDILAQVKQQ 160 (163)
T ss_dssp HHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999986554
No 3
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.96 E-value=3.8e-29 Score=203.89 Aligned_cols=159 Identities=28% Similarity=0.493 Sum_probs=131.6
Q ss_pred CCCeEEEEEecCccccceeccCchhHHHHHhhhCceEEEcccccCCCccEEEeccCCCCchhhHHHHHHHHHHHHHhcCC
Q 025112 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDD 126 (257)
Q Consensus 47 ~~~~~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~A~~~I~~~i~~~~ 126 (257)
+..++++|+||.+.+|.||||+|++||+|+++|||+|+|++. ++++|+|+|+|+. .++.+|+.+|.+.+.+..
T Consensus 2 ~~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~-----~~v~~A~~~I~~~i~e~~ 74 (160)
T 2jzx_A 2 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-----NAIFKAFAMIIDKLEEDI 74 (160)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEH-----HHHHHHHHHHHHHHHHHH
T ss_pred CccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCH-----HHHHHHHHHHHHHHHhhc
Confidence 356899999999999999999999999999999999999976 5789999999984 378899999998886632
Q ss_pred CCCchhhhhccCCCcceEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHH
Q 025112 127 DSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAV 206 (257)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v 206 (257)
....... ........+.++.||.+++|+|||++|++|++|+++|||+|++.+ +..|. +.++.|+|+|++++|
T Consensus 75 ~~~~~~~--~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~-~~~~~-----~~~~~v~I~G~~~~v 146 (160)
T 2jzx_A 75 SSSMTNS--TAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG-DMLPN-----STERAITIAGIPQSI 146 (160)
T ss_dssp TSCCCSS--SCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCC-CCSTT-----CCEEEEEEEECHHHH
T ss_pred cccCCCC--ccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECC-CCCCC-----CCceEEEEEcCHHHH
Confidence 1110000 001123468999999999999999999999999999999999854 34453 678999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 025112 207 LNALVEIGNQLREN 220 (257)
Q Consensus 207 ~~A~~~I~~~l~e~ 220 (257)
++|+++|.+++.|+
T Consensus 147 ~~A~~~I~~~i~e~ 160 (160)
T 2jzx_A 147 IECVKQICVVMLET 160 (160)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999873
No 4
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.95 E-value=3.5e-28 Score=198.58 Aligned_cols=157 Identities=19% Similarity=0.331 Sum_probs=128.2
Q ss_pred eEEEEEecCccccceeccCchhHHHHHhhhCceEEEccc--ccCCCccEEEeccCCCCchhhHHHHHHHHHHHHHhcCCC
Q 025112 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA--IARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDD 127 (257)
Q Consensus 50 ~~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~--~~~~~ervv~I~G~~~~~~~~~~~~A~~~I~~~i~~~~~ 127 (257)
++++|+||.+.+|.||||+|++||+|+++|||+|++.+. .+++.+|+|+|+|.+ .++.+|+.+|.+++.+...
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~-----~~v~~A~~~I~~ii~e~~~ 76 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDP-----YKVQQACEMVMDILRERDQ 76 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECH-----HHHHHHHHHHHHHTTCSSS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCH-----HHHHHHHHHHHHHHHhccC
Confidence 578999999999999999999999999999999999754 245678999999974 3788999999999876542
Q ss_pred CCchhhhhccCCCcceEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHH
Q 025112 128 SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVL 207 (257)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~ 207 (257)
........ .+.....+.++.||.+++|+|||++|++|++|+++|||+|.|.+.+ + .+.++.|+|+|++++++
T Consensus 77 ~~~~~~~~-~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~--~-----~~~~~~v~I~G~~~~v~ 148 (164)
T 2jvz_A 77 GGFGDRNE-YGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD--G-----TGPEKIAHIMGPPDRCE 148 (164)
T ss_dssp CCCSSCSS-CTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCC--T-----TSSEEEEEEESCHHHHH
T ss_pred CCCCCccc-cCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCC--C-----CCCcEEEEEEcCHHHHH
Confidence 21110000 0111124578999999999999999999999999999999997542 1 25689999999999999
Q ss_pred HHHHHHHHHHhc
Q 025112 208 NALVEIGNQLRE 219 (257)
Q Consensus 208 ~A~~~I~~~l~e 219 (257)
+|+.+|.+++++
T Consensus 149 ~A~~~I~~~i~~ 160 (164)
T 2jvz_A 149 HAARIINDLLQS 160 (164)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999999986
No 5
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.95 E-value=4.9e-28 Score=200.03 Aligned_cols=160 Identities=21% Similarity=0.334 Sum_probs=126.6
Q ss_pred CeEEEEEecCccccceeccCchhHHHHHhhhCceEEEcccccCCCccEEEeccCCCCchhhHHHHHHHHHHHHHhcCCCC
Q 025112 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDS 128 (257)
Q Consensus 49 ~~~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~A~~~I~~~i~~~~~~ 128 (257)
..+++|+||.+.+|.||||+|++||+|+++|||+|+|.+..+++.+|+|+|+|..+ ++.+|+.+|.+++.+....
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~-----~v~~A~~~I~~~~~~~~~~ 76 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPD-----RAQHAAEIITDLLRSVQAG 76 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHH-----HHHHHHHHHHHHHHHHC--
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHH-----HHHHHHHHHHHHHHhcccC
Confidence 56899999999999999999999999999999999998765678899999999843 7889999999888765321
Q ss_pred Cchhh------------hhc-cCCCcceEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCce
Q 025112 129 NSEAS------------KVA-AGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDR 195 (257)
Q Consensus 129 ~~~~~------------~~~-~~~~~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r 195 (257)
..... ... .......+.++.||.+++|+|||++|++|++|++.|||+|+|.+.. .+ +. ++.++
T Consensus 77 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~-~~-~~--~~~~~ 152 (174)
T 1j4w_A 77 NPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNP-PP-NA--DPNMK 152 (174)
T ss_dssp ---------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCC-TT-TS--CTTEE
T ss_pred CCCCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCC-CC-CC--CCCce
Confidence 10000 000 0011235789999999999999999999999999999999997532 12 11 26789
Q ss_pred EEEEEcCHHHHHHHHHHHHHHH
Q 025112 196 VVQISGDVPAVLNALVEIGNQL 217 (257)
Q Consensus 196 ~V~I~G~~~~v~~A~~~I~~~l 217 (257)
.|+|+|+++++++|+++|.++|
T Consensus 153 ~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 153 LFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp EEEEECCHHHHHHHHHHHHHHC
T ss_pred EEEEECCHHHHHHHHHHHHHhC
Confidence 9999999999999999999875
No 6
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.85 E-value=4.1e-21 Score=154.01 Aligned_cols=136 Identities=20% Similarity=0.252 Sum_probs=101.3
Q ss_pred CeEEEEEecCccccceeccCchhHHHHHhhhCceEEEcccccCCCccEEEecc-CCCCchhhHHHHHHHHHHHHHhcCCC
Q 025112 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISS-KDNDNVVSDAENALQQIAALILKDDD 127 (257)
Q Consensus 49 ~~~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervv~I~G-~~~~~~~~~~~~A~~~I~~~i~~~~~ 127 (257)
.++.+|+||.+.+|++||++|++|++|++++| |++.... ..+++ +.+.| .++ .+.+| ..++. .
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~-~~~~~-~i~~~~~p~-----~v~~~----~~~l~-~-- 66 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLD-EDTCT-FHIYGEDQD-----AVKKA----RSFLE-F-- 66 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEE-TTTTE-EEEEESSHH-----HHHHH----HHHHC-E--
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccC-CCchh-eeeccCCHH-----HHHHH----HHhhh-c--
Confidence 57899999999999999999999999999999 5443321 13344 44544 332 23333 22221 1
Q ss_pred CCchhhhhccCCCcceEEEEEeecCccceeecCCChhHHHHHHHhCC-eEEEeCCCCCCcccCCCCCc--eEEEEEcCHH
Q 025112 128 SNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGA-TIVILAPNQLPLCASAHESD--RVVQISGDVP 204 (257)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga-~I~i~~~~~~p~~~~~~~~~--r~V~I~G~~~ 204 (257)
...++.||.+++|++|||+|.+|+.|++.||+ +|+|.+.++... ...+ +.|+|+|+++
T Consensus 67 ---------------~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~----~~~~~~~~vtI~G~~~ 127 (144)
T 2qnd_A 67 ---------------AEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNV----PQEEGMVPFVFVGTKD 127 (144)
T ss_dssp ---------------EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCC----CCCTTEEEEEEEEEHH
T ss_pred ---------------ceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCc----cccCCeeEEEEEeCHH
Confidence 12789999999999999999999999999997 999986433210 0223 4689999999
Q ss_pred HHHHHHHHHHHHHhc
Q 025112 205 AVLNALVEIGNQLRE 219 (257)
Q Consensus 205 ~v~~A~~~I~~~l~e 219 (257)
+|+.|.++|.++|++
T Consensus 128 ~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 128 SIANATVLLDYHLNY 142 (144)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999976
No 7
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.81 E-value=5e-20 Score=156.97 Aligned_cols=157 Identities=20% Similarity=0.217 Sum_probs=118.2
Q ss_pred CeEEEEEecCccccceeccCchhHHHHHhhhCceEEEcccccCCCccEEEeccCCCCchhhHHHHHHHHHHHHHhcCCCC
Q 025112 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDS 128 (257)
Q Consensus 49 ~~~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~A~~~I~~~i~~~~~~ 128 (257)
.-..++.||.+.+|.|||++|.+|+.|+++|||+|++.. .++.|.|.+...-....++++|..+|..+......
T Consensus 33 P~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~-----~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg~~~- 106 (219)
T 2e3u_A 33 KQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS-----ETGEVWITSTKETEDPLAVWKARDIVLAIGRGFSP- 106 (219)
T ss_dssp CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT-----TTCEEEEEECTTCCSHHHHHHHHHHHHHHHTTCCH-
T ss_pred CEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc-----CCCEEEEecCCCCCCHHHHHHHHHHHHHHhccCCc-
Confidence 346699999999999999999999999999999999983 35678898865211134788999999998753211
Q ss_pred CchhhhhccCCCcceEEEEEee-----------cCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEE
Q 025112 129 NSEASKVAAGHVAANTIRLLIA-----------GSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVV 197 (257)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~Vp-----------~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V 197 (257)
+...... ..+.....+.++ ...+|+|||++|++|+.|++.|||+|.|. ++.|
T Consensus 107 --e~g~~ll-~dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~--------------~~~v 169 (219)
T 2e3u_A 107 --ERAFRLL-NEGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVY--------------GKTV 169 (219)
T ss_dssp --HHHGGGG-STTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEE--------------TTEE
T ss_pred --cccceec-cCCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEEC--------------CeEE
Confidence 1000000 011111122222 13689999999999999999999999984 2569
Q ss_pred EEEcCHHHHHHHHHHHHHHHhcCCCCCcccC
Q 025112 198 QISGDVPAVLNALVEIGNQLRENPPRQVISI 228 (257)
Q Consensus 198 ~I~G~~~~v~~A~~~I~~~l~e~~~~~~~~~ 228 (257)
+|.|++++++.|..+|.++|.+.++..+|.+
T Consensus 170 ~i~G~~~~i~~A~~~i~~li~g~~~~~vy~~ 200 (219)
T 2e3u_A 170 AIIGNPIQIEIAKTAIEKLARGSPHGSVYRY 200 (219)
T ss_dssp EEEECHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred EEEeCHHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 9999999999999999999999888866654
No 8
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.80 E-value=2.2e-19 Score=163.30 Aligned_cols=166 Identities=14% Similarity=0.135 Sum_probs=120.7
Q ss_pred CCCCCeEEEEEecCccccceeccCc--hhHHHHHhhhCceEEEcccc--c---CCCccEEEeccCCCCchhhHHHHHHHH
Q 025112 45 AKAQDVLFRIIVPSRQIGKVIGKEG--HRIQKIREETKATIKIADAI--A---RHEERVIIISSKDNDNVVSDAENALQQ 117 (257)
Q Consensus 45 ~~~~~~~~rilVP~~~vg~IIGk~G--~~Ik~I~~~tg~~I~i~~~~--~---~~~ervv~I~G~~~~~~~~~~~~A~~~ 117 (257)
.+.+.+++.+.||..+|+.||||+| ++|++|+++|||+|+|++.. . ......|+|+|..+ ++.+|..+
T Consensus 25 ~~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~e-----nVE~AR~~ 99 (376)
T 3n89_A 25 INPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFG-----DVDRARML 99 (376)
T ss_dssp CCTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHH-----HHHHHHHH
T ss_pred ecCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHH-----HHHHHHHH
Confidence 4467899999999999999999999 99999999999999999764 1 12446799999965 56677776
Q ss_pred HHHH----------------------HhcCCCC----------C-----chh----------hhh-----------c---
Q 025112 118 IAAL----------------------ILKDDDS----------N-----SEA----------SKV-----------A--- 136 (257)
Q Consensus 118 I~~~----------------------i~~~~~~----------~-----~~~----------~~~-----------~--- 136 (257)
|.++ +...... . .+. ... .
T Consensus 100 I~~l~Pl~i~~elp~~~i~~~~l~~~I~qq~~y~V~I~Fp~~~~~~~~~sd~V~IrG~~~nv~~akeA~~~Ll~~l~~~e 179 (376)
T 3n89_A 100 MRRNCHFTVFMALSKMKMPLHELQAHVRQNPIQNVEMSFVDAPEKNGIVTTYLRITAREKNQHELIEAAKRLNEILFRES 179 (376)
T ss_dssp HHHSCEEEEEEECTTCSSCHHHHHHHHHHCCCTTCEEEEEEEC-----CEEEEEEEEEGGGHHHHHHHHHHHHHHHCC--
T ss_pred HHhcCCceEEEEccccccCcchhhhhhccceeCceEEEeCCcccccCCCCCEEEEEcChhhHHHHHHHHHHHHHHHHhhh
Confidence 6552 2110000 0 000 000 0
Q ss_pred cCCCcceEEEEEeecCccceeecCCC--hhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHH
Q 025112 137 AGHVAANTIRLLIAGSQAGCLIGMSG--QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIG 214 (257)
Q Consensus 137 ~~~~~~~~~~l~Vp~~~vG~iIGk~G--~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~ 214 (257)
......++..+.|+..+|..|||++| ..|++|+++|||+|.++..++.... ......|+|+|+.++|.+|+++|+
T Consensus 180 ~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~---~~~~~~ItItGs~e~V~~Ark~I~ 256 (376)
T 3n89_A 180 PAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNET---RGNIYEIKVVGNIDNVLKARRYIM 256 (376)
T ss_dssp CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC------------CCEEEEEEESCHHHHHHHHHHHH
T ss_pred cccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccc---cCCceEEEEEeCHHHHHHHHHHHH
Confidence 01124578899999999999999999 5579999999999998754331110 024679999999999999999999
Q ss_pred HHHh
Q 025112 215 NQLR 218 (257)
Q Consensus 215 ~~l~ 218 (257)
++|-
T Consensus 257 ~lLP 260 (376)
T 3n89_A 257 DLLP 260 (376)
T ss_dssp HTSE
T ss_pred hhCC
Confidence 9875
No 9
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.70 E-value=8.5e-17 Score=134.03 Aligned_cols=149 Identities=17% Similarity=0.199 Sum_probs=113.6
Q ss_pred EEEEEecCccccceeccCchhHHHHHhhhCceEEEcccccCCCccEEEeccCCCCchhhHHHHHHHHHHHHHhcCCCCCc
Q 025112 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNS 130 (257)
Q Consensus 51 ~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~A~~~I~~~i~~~~~~~~ 130 (257)
.++++||.+.+|.|||++|++++.|++.+|++|++. ..++.++|...........+++|...|..+.......
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id-----~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~e-- 77 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVD-----TENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPE-- 77 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEE-----TTTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCHH--
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEE-----cCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHH--
Confidence 368999999999999999999999999999999997 4577888873322212457899999998887765321
Q ss_pred hhhhhccCCCcceEEEEEee----------cCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEE
Q 025112 131 EASKVAAGHVAANTIRLLIA----------GSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQIS 200 (257)
Q Consensus 131 ~~~~~~~~~~~~~~~~l~Vp----------~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~ 200 (257)
+..+.. ..+.....+.++ ...+|+|||++|.+|+.|+..|||+|.|. ++.|.|.
T Consensus 78 ~A~~Ll--~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~--------------~~~v~i~ 141 (191)
T 1tua_A 78 KAFRLL--EEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVG--------------EYEVAII 141 (191)
T ss_dssp HHGGGG--STTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEEC--------------SSEEEEE
T ss_pred Hhhhcc--cCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEc--------------CCEEEEE
Confidence 111110 011122223243 23589999999999999999999999983 2479999
Q ss_pred cCHHHHHHHHHHHHHHHhcCCC
Q 025112 201 GDVPAVLNALVEIGNQLRENPP 222 (257)
Q Consensus 201 G~~~~v~~A~~~I~~~l~e~~~ 222 (257)
|++++++.|...|.++|...++
T Consensus 142 G~~~~i~~Ar~~i~~li~g~~h 163 (191)
T 1tua_A 142 GDYERAMAAKQAIEMLAEGRMH 163 (191)
T ss_dssp EEHHHHHHHHHHHHHHHTTCCH
T ss_pred eChHHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999987666
No 10
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.63 E-value=4.8e-16 Score=110.23 Aligned_cols=70 Identities=34% Similarity=0.617 Sum_probs=63.6
Q ss_pred ceEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 025112 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (257)
Q Consensus 142 ~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e~ 220 (257)
....+++||.+.+|.|||++|++|++|+++|||+|++.+. +..+|.|+|+|+++++.+|+++|.++|+|+
T Consensus 4 ~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~---------~~~er~v~I~G~~~~v~~A~~~I~~~l~ed 73 (73)
T 2axy_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG---------NCPERIITLAGPTNAIFKAFAMIIDKLEED 73 (73)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS---------CCSEEEEEEEECHHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC---------CCCcEEEEEEeCHHHHHHHHHHHHHHHhcC
Confidence 4689999999999999999999999999999999999643 146899999999999999999999999874
No 11
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.62 E-value=1.3e-15 Score=108.76 Aligned_cols=72 Identities=22% Similarity=0.390 Sum_probs=63.6
Q ss_pred eEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCC-CCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 025112 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219 (257)
Q Consensus 143 ~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~-~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e 219 (257)
.+.++.||.+.+|+|||++|++|++|++.|||+|+|.+.++ .| ++.++.|+|+|+++++++|+.+|.+++.+
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~-----~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLP-----GTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCST-----TCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCC-----CCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999999999999976433 23 36789999999999999999999999875
No 12
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.61 E-value=5.7e-16 Score=109.86 Aligned_cols=71 Identities=25% Similarity=0.502 Sum_probs=64.6
Q ss_pred CCCeEEEEEecCccccceeccCchhHHHHHhhhCceEEEcccccCCCccEEEeccCCCCchhhHHHHHHHHHHHHHhc
Q 025112 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILK 124 (257)
Q Consensus 47 ~~~~~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~A~~~I~~~i~~ 124 (257)
...++++|+||.+.+|.||||+|++||+|+++|||+|+|++. ++++|+|+|+|.+ .++.+|+.+|.+++.+
T Consensus 2 ~~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~--~~~er~v~I~G~~-----~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 2 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT-----NAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS--CCSEEEEEEEECH-----HHHHHHHHHHHHHHHC
T ss_pred CceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC--CCCcEEEEEEeCH-----HHHHHHHHHHHHHHhc
Confidence 356899999999999999999999999999999999999976 5789999999984 3789999999999875
No 13
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.60 E-value=2.4e-15 Score=108.95 Aligned_cols=72 Identities=35% Similarity=0.520 Sum_probs=63.7
Q ss_pred ceEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 025112 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (257)
Q Consensus 142 ~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e~ 220 (257)
..+.++.||.+++|.|||++|++|++|+++|||+|+|.+. .+ ++.++.|+|+|+++++++|+.+|.+++.+.
T Consensus 5 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~--~~-----~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 5 QTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP--VE-----GSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC--CT-----TCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred cEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC--CC-----CCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 4688999999999999999999999999999999999642 22 267999999999999999999999999886
No 14
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.60 E-value=4.1e-15 Score=107.74 Aligned_cols=72 Identities=33% Similarity=0.521 Sum_probs=64.5
Q ss_pred ceEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 025112 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (257)
Q Consensus 142 ~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e~ 220 (257)
..+.++.||.+.+|+|||++|++|++|+++|||+|+|.+. .+ ++.+|.|+|+|+++++++|+++|.+++.+.
T Consensus 6 ~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~--~~-----~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 6 IITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP--LE-----GSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCT--TS-----CSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCC--CC-----CCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 3688999999999999999999999999999999999632 22 257899999999999999999999999874
No 15
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.60 E-value=2.1e-15 Score=107.65 Aligned_cols=72 Identities=32% Similarity=0.512 Sum_probs=64.6
Q ss_pred ceEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 025112 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (257)
Q Consensus 142 ~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e~ 220 (257)
..+.++.||.+++|+|||++|++|++|++.|||+|++.+. .+ ++.++.|+|+|+++++++|+++|.+++.+.
T Consensus 4 ~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~--~~-----~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP--VE-----GSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCC--CT-----TCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred ceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCC--CC-----CCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 3678999999999999999999999999999999999642 22 367999999999999999999999999864
No 16
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.58 E-value=1.2e-15 Score=108.97 Aligned_cols=73 Identities=26% Similarity=0.444 Sum_probs=66.3
Q ss_pred CCeEEEEEecCccccceeccCchhHHHHHhhhCceEEEcccccCCCccEEEeccCCCCchhhHHHHHHHHHHHHHhcC
Q 025112 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (257)
Q Consensus 48 ~~~~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~A~~~I~~~i~~~ 125 (257)
..++++|+||.+.+|.||||+|++|++|+++|||+|+|.+..+++.+|.|+|+|.+ .++.+|..+|.+++.++
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~-----~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSA-----ASISLAQYLINVRLSSE 75 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECH-----HHHHHHHHHHHHHHTTC
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeCH-----HHHHHHHHHHHHHHHcc
Confidence 56889999999999999999999999999999999999987777889999999984 37889999999988653
No 17
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=4.1e-15 Score=113.09 Aligned_cols=94 Identities=19% Similarity=0.288 Sum_probs=66.3
Q ss_pred EEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcCCCC
Q 025112 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPPR 223 (257)
Q Consensus 144 ~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e~~~~ 223 (257)
+.+|.||.+++|+||||+|++||+|+++|||+|+|.+.. .+.. +..++.|+|+|++++|++|+++|.++|.+..
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~-~~~~---~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~~-- 81 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQL-PPNG---DPNFKLFIIRGSPQQIDHAKQLIEEKIEGPL-- 81 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCC-CTTC---CTTEEEEEEESCHHHHHHHHHHHHHHSCSCC--
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCcc-CCCC---CCCceEEEEECCHHHHHHHHHHHHHHHhccc--
Confidence 689999999999999999999999999999999996532 2211 2568999999999999999999999998864
Q ss_pred CcccCCCCCCC-CCCCCCCCCcC
Q 025112 224 QVISISPAYNY-SAIRPAQPFVE 245 (257)
Q Consensus 224 ~~~~~~p~~~~-~~~~~~~~~~~ 245 (257)
..|.|...- ...+..+.|.+
T Consensus 82 --~~~~p~~~~~~~~~~~~~~~~ 102 (107)
T 2hh2_A 82 --CPVGPGPGGPGPAGPMGPFNP 102 (107)
T ss_dssp --CEEC-----------------
T ss_pred --ccCCCCCCCCCCCCCCCCCCC
Confidence 245453322 22333355655
No 18
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.57 E-value=3.7e-15 Score=109.15 Aligned_cols=73 Identities=22% Similarity=0.389 Sum_probs=65.0
Q ss_pred eEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCC-CCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 025112 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (257)
Q Consensus 143 ~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~-~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e~ 220 (257)
.+.++.||.+.+|+|||++|++|++|++.|||+|+|.+.++ .| ++.++.|+|+|+++++++|+.+|.+++.+.
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~-----g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLP-----GTRNRRVTITGSPAATQAAQYLISQRVTYE 76 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBST-----TSCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCC-----CCCceEEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 47899999999999999999999999999999999975432 23 267899999999999999999999999873
No 19
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=106.09 Aligned_cols=72 Identities=25% Similarity=0.448 Sum_probs=63.5
Q ss_pred eEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 025112 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219 (257)
Q Consensus 143 ~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e 219 (257)
...++.||.+.+|+|||++|++||+|+++|||+|.+.+....+ .+.+|.|+|+|+++++++|+++|.++++|
T Consensus 14 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~-----~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 14 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN-----TNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp EEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSS-----TTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCC-----CCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 5789999999999999999999999999999999996532222 26789999999999999999999999875
No 20
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.57 E-value=4.7e-15 Score=107.44 Aligned_cols=73 Identities=29% Similarity=0.505 Sum_probs=65.8
Q ss_pred CCeEEEEEecCccccceeccCchhHHHHHhhhCceEEEcccccCCCccEEEeccCCCCchhhHHHHHHHHHHHHHhcC
Q 025112 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (257)
Q Consensus 48 ~~~~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~A~~~I~~~i~~~ 125 (257)
..++++|+||.+.+|.||||+|++|++|+++|||+|+|++..+++.+|.|+|+|++ .++++|..+|.+++.+.
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~-----~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ-----DQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEECH-----HHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeCH-----HHHHHHHHHHHHHHHhc
Confidence 46889999999999999999999999999999999999987677889999999984 37889999999988653
No 21
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.56 E-value=3.6e-15 Score=108.04 Aligned_cols=73 Identities=26% Similarity=0.421 Sum_probs=65.0
Q ss_pred CCeEEEEEecCccccceeccCchhHHHHHhhhCceEEEcccccCCCccEEEeccCCCCchhhHHHHHHHHHHHHHhcC
Q 025112 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (257)
Q Consensus 48 ~~~~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~A~~~I~~~i~~~ 125 (257)
..++++|+||.+.+|.||||+|++|++|+++|||+|+|.+..+++.+|.|+|+|.++ ++.+|..+|.+++.+.
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~~-----~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAA-----SISLAQYLINARLSSE 76 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHH-----HHHHHHHHHHHHTC--
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCHH-----HHHHHHHHHHHHHHhh
Confidence 467899999999999999999999999999999999999876678899999999853 7889999999988664
No 22
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=3.2e-15 Score=108.49 Aligned_cols=71 Identities=20% Similarity=0.279 Sum_probs=63.4
Q ss_pred CcceEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 025112 140 VAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219 (257)
Q Consensus 140 ~~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e 219 (257)
.+..+.++.||.+++|+||||+|++||+|+++|||+|+|++. ..++.|+|+|+++++++|+++|.+++..
T Consensus 7 ~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~----------~~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 7 GGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR----------DKEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp CCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS----------SSCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC----------CCCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 345789999999999999999999999999999999999643 2368999999999999999999998776
Q ss_pred C
Q 025112 220 N 220 (257)
Q Consensus 220 ~ 220 (257)
.
T Consensus 77 r 77 (83)
T 2dgr_A 77 R 77 (83)
T ss_dssp C
T ss_pred c
Confidence 3
No 23
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.55 E-value=1.4e-14 Score=107.27 Aligned_cols=74 Identities=19% Similarity=0.302 Sum_probs=65.7
Q ss_pred cceEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 025112 141 AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (257)
Q Consensus 141 ~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e~ 220 (257)
...+.++.||.+.+|+|||++|++|++|+++|||+|+|.+.. + +..+|.|+|+|++++|++|+.+|.+++.+.
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~--~-----g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS--G-----GLPERSCMLTGTPESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC--T-----TCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCC--C-----CCCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 346899999999999999999999999999999999996432 2 257899999999999999999999999985
Q ss_pred C
Q 025112 221 P 221 (257)
Q Consensus 221 ~ 221 (257)
.
T Consensus 86 ~ 86 (92)
T 1x4n_A 86 R 86 (92)
T ss_dssp T
T ss_pred c
Confidence 4
No 24
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.55 E-value=6.9e-15 Score=109.30 Aligned_cols=76 Identities=24% Similarity=0.420 Sum_probs=66.2
Q ss_pred CcceEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 025112 140 VAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219 (257)
Q Consensus 140 ~~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e 219 (257)
++..+.++.||.+.+|+||||+|++||+|+++|||+|+|.+..... ...+|.|+|+|+++++++|+++|.+++.+
T Consensus 12 p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~-----~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 86 (94)
T 1x4m_A 12 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN-----TGADKPLRITGDPYKVQQAKEMVLELIRD 86 (94)
T ss_dssp CCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS-----SCSCEEEEEEECTTTHHHHHHHHHHHHCC
T ss_pred CCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCC-----CCCceEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 3557899999999999999999999999999999999996432211 14789999999999999999999999987
Q ss_pred C
Q 025112 220 N 220 (257)
Q Consensus 220 ~ 220 (257)
.
T Consensus 87 ~ 87 (94)
T 1x4m_A 87 Q 87 (94)
T ss_dssp C
T ss_pred c
Confidence 4
No 25
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.54 E-value=9.5e-15 Score=107.44 Aligned_cols=72 Identities=33% Similarity=0.507 Sum_probs=64.8
Q ss_pred ceEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 025112 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (257)
Q Consensus 142 ~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e~ 220 (257)
..+.++.||.+.+|.|||++|++|++|+++|||+|+|.+. .+. +.++.|+|+|+++++++|+++|.+++.+.
T Consensus 13 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~--~~~-----~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 13 IITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP--LEG-----SEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp EEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSC--CSS-----SSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCC--CCC-----CCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 4688999999999999999999999999999999999632 232 67899999999999999999999999884
No 26
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=2.5e-14 Score=108.55 Aligned_cols=72 Identities=22% Similarity=0.337 Sum_probs=63.9
Q ss_pred eEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcCC
Q 025112 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221 (257)
Q Consensus 143 ~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e~~ 221 (257)
.+.++.||.+++|+||||+|++||+|+++|||+|+|.+.+ + .+.+|.|+|+|+++++++|+++|.+++.+..
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~--~-----~~~er~V~I~G~~e~v~~A~~~I~~ii~~~~ 82 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD--G-----TGPEKIAHIMGPPDRCEHAARIINDLLQSLR 82 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC--S-----SSSEEEEEEESSHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC--C-----CCceeEEEEEeCHHHHHHHHHHHHHHHhccc
Confidence 4689999999999999999999999999999999996432 2 2568999999999999999999999998844
No 27
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.52 E-value=1.7e-14 Score=106.72 Aligned_cols=74 Identities=22% Similarity=0.369 Sum_probs=66.5
Q ss_pred CCeEEEEEecCccccceeccCchhHHHHHhhhCceEEEcccccCCCccEEEeccCCCCchhhHHHHHHHHHHHHHhcCC
Q 025112 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDD 126 (257)
Q Consensus 48 ~~~~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~A~~~I~~~i~~~~ 126 (257)
..++++|+||.+.+|.||||+|++|++|+++|||+|+|.+..++..+|.|+|+|+++ ++++|..+|.+++.+..
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~~e-----~v~~A~~~I~~~i~~~~ 86 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPE-----SVQSAKRLLDQIVEKGR 86 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEECHH-----HHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeCHH-----HHHHHHHHHHHHHHhcc
Confidence 468899999999999999999999999999999999999876677899999999843 78899999999987653
No 28
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.52 E-value=2.3e-14 Score=108.37 Aligned_cols=77 Identities=23% Similarity=0.265 Sum_probs=66.2
Q ss_pred cceEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 025112 141 AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (257)
Q Consensus 141 ~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e~ 220 (257)
...+.++.||.+.+|+|||++|++|++|+++|||+|+|.+..+.. .+.++.|+|+|+++++++|+++|.+++.+.
T Consensus 13 ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~-----~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 13 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGT-----LLLSRLIKISGTQKEVAAAKHLILEKVSED 87 (104)
T ss_dssp CEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCS-----SSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCC-----CCCcceEEEEcCHHHHHHHHHHHHHHHhhC
Confidence 346889999999999999999999999999999999996532211 136899999999999999999999999885
Q ss_pred CC
Q 025112 221 PP 222 (257)
Q Consensus 221 ~~ 222 (257)
+.
T Consensus 88 ~~ 89 (104)
T 1we8_A 88 EE 89 (104)
T ss_dssp HH
T ss_pred hH
Confidence 53
No 29
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.52 E-value=7.8e-15 Score=107.92 Aligned_cols=73 Identities=29% Similarity=0.513 Sum_probs=66.1
Q ss_pred CCeEEEEEecCccccceeccCchhHHHHHhhhCceEEEcccccCCCccEEEeccCCCCchhhHHHHHHHHHHHHHhcC
Q 025112 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (257)
Q Consensus 48 ~~~~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~A~~~I~~~i~~~ 125 (257)
..++++|+||.+.+|.||||+|++||+|+++|||+|+|++..+++.+|.|+|+|+++ ++++|..+|.+++.+.
T Consensus 12 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~~e-----~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 12 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQD-----QIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEEHH-----HHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcCHH-----HHHHHHHHHHHHHHhh
Confidence 468899999999999999999999999999999999999876778899999999853 7889999999988764
No 30
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.51 E-value=1.5e-14 Score=103.18 Aligned_cols=71 Identities=23% Similarity=0.380 Sum_probs=61.9
Q ss_pred CeEEEEEecCccccceeccCchhHHHHHhhhCceEEEccc---ccCCCccEEEeccCCCCchhhHHHHHHHHHHHHHhc
Q 025112 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA---IARHEERVIIISSKDNDNVVSDAENALQQIAALILK 124 (257)
Q Consensus 49 ~~~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~---~~~~~ervv~I~G~~~~~~~~~~~~A~~~I~~~i~~ 124 (257)
..+++|+||.+.+|.||||+|++|++|+++|||+|+|++. .+++.+|.|+|+|++ .++.+|..+|.+++.+
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~-----~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSP-----AATQAAQYLISQRVTY 75 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESH-----HHHHHHHHHHHHHCC-
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCH-----HHHHHHHHHHHHHHhc
Confidence 3578999999999999999999999999999999999964 356788999999984 3788999999988754
No 31
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.51 E-value=4.2e-14 Score=105.00 Aligned_cols=77 Identities=18% Similarity=0.348 Sum_probs=67.1
Q ss_pred CCCCCeEEEEEecCccccceeccCchhHHHHHhhhCceEEEccccc--CCCccEEEeccCCCCchhhHHHHHHHHHHHHH
Q 025112 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIA--RHEERVIIISSKDNDNVVSDAENALQQIAALI 122 (257)
Q Consensus 45 ~~~~~~~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~--~~~ervv~I~G~~~~~~~~~~~~A~~~I~~~i 122 (257)
..++.++++|+||.+.+|.||||+|++||+|+++|||+|+|.+..+ ...+|.|+|+|+++ ++.+|+.+|.+++
T Consensus 10 ~~p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~-----~v~~A~~~I~~~i 84 (94)
T 1x4m_A 10 DGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPY-----KVQQAKEMVLELI 84 (94)
T ss_dssp CCCCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTT-----THHHHHHHHHHHH
T ss_pred CCCCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHH-----HHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999996532 35799999999765 6889999999999
Q ss_pred hcCC
Q 025112 123 LKDD 126 (257)
Q Consensus 123 ~~~~ 126 (257)
.+..
T Consensus 85 ~~~~ 88 (94)
T 1x4m_A 85 RDQG 88 (94)
T ss_dssp CCCS
T ss_pred hccC
Confidence 7653
No 32
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=3.4e-14 Score=103.08 Aligned_cols=71 Identities=24% Similarity=0.407 Sum_probs=62.8
Q ss_pred CCCCeEEEEEecCccccceeccCchhHHHHHhhhCceEEEcccccCCCccEEEeccCCCCchhhHHHHHHHHHHHHHhc
Q 025112 46 KAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILK 124 (257)
Q Consensus 46 ~~~~~~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~A~~~I~~~i~~ 124 (257)
.++.++++|.||.+.+|+||||+|++||+|+++|||+|+|+.. .++++++|+|.++ ++++|..+|.+++..
T Consensus 6 ~~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~---~~~~~v~ItG~~e-----~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 6 SGGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR---DKEPVFAVTGMPE-----NVDRAREEIEAHITL 76 (83)
T ss_dssp SCCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS---SSCCEEEEEECTT-----THHHHHHHHHHHHHS
T ss_pred CCCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC---CCCCeEEEEcCHH-----HHHHHHHHHHHHHhc
Confidence 3467899999999999999999999999999999999999864 3478999999976 688999999997654
No 33
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.47 E-value=1.1e-13 Score=102.85 Aligned_cols=73 Identities=18% Similarity=0.146 Sum_probs=64.0
Q ss_pred cceEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 025112 141 AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (257)
Q Consensus 141 ~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e~ 220 (257)
...+..+.||.+++|.|||++|++|++|+++|||+|+|++..+ ..++.|+|+|.+++|++|+++|.+++.+.
T Consensus 15 ~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~--------~~~~~V~I~G~~e~v~~A~~~I~~i~~e~ 86 (95)
T 2ctm_A 15 QMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGA--------PDPNCVTVTGLPENVEEAIDHILNLEEEY 86 (95)
T ss_dssp TCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTC--------SCTTEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCC--------CCCcEEEEEcCHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999999999999999964311 34689999999999999999999998874
Q ss_pred C
Q 025112 221 P 221 (257)
Q Consensus 221 ~ 221 (257)
.
T Consensus 87 ~ 87 (95)
T 2ctm_A 87 L 87 (95)
T ss_dssp H
T ss_pred H
Confidence 3
No 34
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.47 E-value=1.5e-13 Score=102.65 Aligned_cols=71 Identities=15% Similarity=0.130 Sum_probs=63.2
Q ss_pred eEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 025112 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219 (257)
Q Consensus 143 ~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e 219 (257)
++..+.||..++|.|||++|++|++|+++|||+|+|++..+ +. ..++.|+|+|+.+++++|+.+|..++.+
T Consensus 17 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~-~~-----~~~~~V~I~G~~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 17 FKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD-GN-----QPQDQITITGYEKNTEAARDAILRIVGE 87 (97)
T ss_dssp CEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT-CS-----SCSSEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC-CC-----CCccEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999965322 21 3679999999999999999999999876
No 35
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.46 E-value=3.8e-14 Score=103.74 Aligned_cols=70 Identities=24% Similarity=0.383 Sum_probs=62.5
Q ss_pred eEEEEEecCccccceeccCchhHHHHHhhhCceEEEccc---ccCCCccEEEeccCCCCchhhHHHHHHHHHHHHHhc
Q 025112 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA---IARHEERVIIISSKDNDNVVSDAENALQQIAALILK 124 (257)
Q Consensus 50 ~~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~---~~~~~ervv~I~G~~~~~~~~~~~~A~~~I~~~i~~ 124 (257)
.+++|+||.+.+|.||||+|++|++|+++|||+|+|++. .+++.+|.|+|+|+++ ++..|..+|.+++.+
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~-----~v~~A~~~I~~~i~~ 75 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPA-----ATQAAQYLISQRVTY 75 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHH-----HHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHH-----HHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999964 3567899999999843 788999999998865
No 36
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.46 E-value=1.1e-13 Score=100.91 Aligned_cols=72 Identities=17% Similarity=0.345 Sum_probs=62.3
Q ss_pred CCeEEEEEecCccccceeccCchhHHHHHhhhCceEEEcccc--cCCCccEEEeccCCCCchhhHHHHHHHHHHHHHhc
Q 025112 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI--ARHEERVIIISSKDNDNVVSDAENALQQIAALILK 124 (257)
Q Consensus 48 ~~~~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~--~~~~ervv~I~G~~~~~~~~~~~~A~~~I~~~i~~ 124 (257)
....++|.||.+.+|.||||+|++||+|+++|||+|+|.+.. +.+.+|.|+|+|.+ .++.+|..+|.+++.+
T Consensus 12 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~~-----~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 12 NGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDP-----YKVQQACEMVMDILRE 85 (85)
T ss_dssp SSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEECH-----HHHHHHHHHHHHHHTC
T ss_pred CCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeCH-----HHHHHHHHHHHHHhcC
Confidence 457889999999999999999999999999999999999752 35679999999964 3788899999888753
No 37
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=5.5e-14 Score=106.64 Aligned_cols=72 Identities=24% Similarity=0.345 Sum_probs=63.4
Q ss_pred eEEEEEecCccccceeccCchhHHHHHhhhCceEEEcccccCCCccEEEeccCCCCchhhHHHHHHHHHHHHHhcCC
Q 025112 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDD 126 (257)
Q Consensus 50 ~~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~A~~~I~~~i~~~~ 126 (257)
.+++|+||.+.++.||||+|++||+|+++|+|+|+|.+..+.+++|+|+|+|+++ ++++|..+|.+++.+..
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~~e-----~v~~A~~~I~~ii~~~~ 82 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPD-----RCEHAARIINDLLQSLR 82 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESSHH-----HHHHHHHHHHHHHHHHC
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeCHH-----HHHHHHHHHHHHHhccc
Confidence 3689999999999999999999999999999999999765567899999999843 78899999999887653
No 38
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.46 E-value=7.7e-14 Score=98.26 Aligned_cols=66 Identities=24% Similarity=0.350 Sum_probs=59.2
Q ss_pred eEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHH
Q 025112 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQL 217 (257)
Q Consensus 143 ~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l 217 (257)
.+..+.||.+++|.|||++|++|++|+++|||+|+|++.. ..++.|+|+|+++++++|+++|.+++
T Consensus 5 ~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g---------~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 5 DYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS---------EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp EEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC---------SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred EEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC---------CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999996421 35689999999999999999998864
No 39
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.44 E-value=1.4e-13 Score=102.22 Aligned_cols=74 Identities=19% Similarity=0.298 Sum_probs=64.9
Q ss_pred cceEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 025112 141 AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (257)
Q Consensus 141 ~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e~ 220 (257)
...+.++.||.+.+|.|||++|++|++|+++|||+|+|++.+ +.++.|+|+|+++++++|..+|.+++.+.
T Consensus 15 ~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~---------~~~~~V~I~G~~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 15 TQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD---------DPSNQIKITGTKEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp SCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT---------SSCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC---------CCCCeEEEEECHHHHHHHHHHHHHHhhcc
Confidence 346899999999999999999999999999999999996421 23579999999999999999999999885
Q ss_pred CCC
Q 025112 221 PPR 223 (257)
Q Consensus 221 ~~~ 223 (257)
...
T Consensus 86 ~~~ 88 (94)
T 2cte_A 86 DKR 88 (94)
T ss_dssp HTC
T ss_pred ccc
Confidence 444
No 40
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.42 E-value=1.5e-13 Score=104.44 Aligned_cols=70 Identities=23% Similarity=0.382 Sum_probs=61.6
Q ss_pred EEEEEecCccccceeccCchhHHHHHhhhCceEEEcccc---cCCCccEEEeccCCCCchhhHHHHHHHHHHHHHhcC
Q 025112 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI---ARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (257)
Q Consensus 51 ~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~---~~~~ervv~I~G~~~~~~~~~~~~A~~~I~~~i~~~ 125 (257)
+++|+||.+.+|.||||+|++||+|+++|||+|+|.+.. .+..+|.|+|+|+. .++++|+.+|.+++.+.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~-----e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSP-----QQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCH-----HHHHHHHHHHHHHSCSC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCH-----HHHHHHHHHHHHHHhcc
Confidence 689999999999999999999999999999999999652 23468999999974 47899999999998765
No 41
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.42 E-value=1.9e-13 Score=96.23 Aligned_cols=67 Identities=19% Similarity=0.357 Sum_probs=58.3
Q ss_pred CCeEEEEEecCccccceeccCchhHHHHHhhhCceEEEcccccCCCccEEEeccCCCCchhhHHHHHHHHHHHH
Q 025112 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAAL 121 (257)
Q Consensus 48 ~~~~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~A~~~I~~~ 121 (257)
...+..|.||.+++|.|||++|++|++|+++|||+|+|++. +..++.|+|+|..+ ++.+|..+|.++
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~--g~~~~~V~I~G~~~-----~v~~A~~~I~~i 69 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPD--SEKSNLIRIEGDPQ-----GVQQAKRELLEL 69 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCC--CSSSEEEEEEESSH-----HHHHHHHHHHHT
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCC--CCcccEEEEEcCHH-----HHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999975 45778999999853 678888888765
No 42
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.40 E-value=2.8e-13 Score=102.40 Aligned_cols=73 Identities=26% Similarity=0.405 Sum_probs=63.2
Q ss_pred CCeEEEEEecCccccceeccCchhHHHHHhhhCceEEEcccccC--CCccEEEeccCCCCchhhHHHHHHHHHHHHHhcC
Q 025112 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIAR--HEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (257)
Q Consensus 48 ~~~~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~--~~ervv~I~G~~~~~~~~~~~~A~~~I~~~i~~~ 125 (257)
...+++|+||.+.+|.||||+|++||+|+++|||+|+|.+...+ ..++.|+|+|..+ .+.+|+.+|.+++.+.
T Consensus 13 ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~-----~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 13 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQK-----EVAAAKHLILEKVSED 87 (104)
T ss_dssp CEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHH-----HHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHH-----HHHHHHHHHHHHHhhC
Confidence 45789999999999999999999999999999999999975432 3689999999854 6789999999988653
No 43
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.39 E-value=4.1e-13 Score=100.24 Aligned_cols=73 Identities=22% Similarity=0.332 Sum_probs=61.6
Q ss_pred CCeEEEEEecCccccceeccCchhHHHHHhhhCceEEEcccc-cCCCccEEEeccCCCCchhhHHHHHHHHHHHHHhcC
Q 025112 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAI-ARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (257)
Q Consensus 48 ~~~~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~-~~~~ervv~I~G~~~~~~~~~~~~A~~~I~~~i~~~ 125 (257)
..++++|.||.++++.||||+|++|++|+++|||+|+|++.. ++..++.|+|+|..+ ++.+|..+|..++.+.
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~~e-----~v~~A~~~I~~iv~e~ 88 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEK-----NTEAARDAILRIVGEL 88 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESCHH-----HHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeCHH-----HHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999999999999999752 234689999999843 6778888888877543
No 44
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.39 E-value=1.1e-12 Score=106.33 Aligned_cols=76 Identities=24% Similarity=0.413 Sum_probs=66.2
Q ss_pred eEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcCCC
Q 025112 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENPP 222 (257)
Q Consensus 143 ~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e~~~ 222 (257)
++.+++||.+.+|.|||++|++|++|+++|||+|++.+....+. ..+|.|+|+|++++|.+|+.+|.+++.+...
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~-----~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~~ 76 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNT-----NVDKPLRIIGDPYKVQQACEMVMDILRERDQ 76 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSS-----SSCEEEEEEECHHHHHHHHHHHHHHTTCSSS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCC-----CCceEEEEEcCHHHHHHHHHHHHHHHHhccC
Confidence 47899999999999999999999999999999999965332222 5789999999999999999999999998654
Q ss_pred C
Q 025112 223 R 223 (257)
Q Consensus 223 ~ 223 (257)
.
T Consensus 77 ~ 77 (164)
T 2jvz_A 77 G 77 (164)
T ss_dssp C
T ss_pred C
Confidence 3
No 45
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.38 E-value=6.6e-13 Score=100.34 Aligned_cols=69 Identities=20% Similarity=0.280 Sum_probs=61.8
Q ss_pred ceEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 025112 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219 (257)
Q Consensus 142 ~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e 219 (257)
+....+.||.+++|.|||++|++|++|+++|||+|+|++.. ...+.|+|+|+++++++|+.+|..++.+
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g---------~~~~~V~I~G~~e~v~~A~~~I~~i~~e 84 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE---------LQSDIIAITGLAANLDRAKAGLLERVKE 84 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT---------TTCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC---------CCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 46889999999999999999999999999999999996421 2356999999999999999999999887
No 46
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.38 E-value=8.1e-13 Score=108.83 Aligned_cols=79 Identities=30% Similarity=0.471 Sum_probs=69.0
Q ss_pred cceEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCC-CCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 025112 141 AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ-LPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219 (257)
Q Consensus 141 ~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~-~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e 219 (257)
+.++++++||.+.+|.|||++|++|++|+++|||+|+|.+..+ .|. ..+|.|+|+|++++|.+|..+|.+++.+
T Consensus 4 ~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~-----~~er~v~I~G~~~~v~~A~~~I~~~~~~ 78 (178)
T 2anr_A 4 SQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPG-----TTERVCLIQGTIEALNAVHGFIAEKIRE 78 (178)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTT-----SSEEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCC-----CCCceEEEEeCHHHHHHHHHHHHHHHhc
Confidence 4578999999999999999999999999999999999965432 343 6789999999999999999999999998
Q ss_pred CCCCC
Q 025112 220 NPPRQ 224 (257)
Q Consensus 220 ~~~~~ 224 (257)
.+...
T Consensus 79 ~~~~~ 83 (178)
T 2anr_A 79 MPQNV 83 (178)
T ss_dssp CCCC-
T ss_pred cCCcc
Confidence 76543
No 47
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.38 E-value=3.3e-13 Score=100.15 Aligned_cols=73 Identities=19% Similarity=0.307 Sum_probs=63.2
Q ss_pred CCCCeEEEEEecCccccceeccCchhHHHHHhhhCceEEEcccccCCCccEEEeccCCCCchhhHHHHHHHHHHHHHhcC
Q 025112 46 KAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (257)
Q Consensus 46 ~~~~~~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~A~~~I~~~i~~~ 125 (257)
....++.+|.||.+.+|.|||++|.+||+|+++|||+|+|++. +..++.|+|+|.. .++.+|..+|.+++.+.
T Consensus 13 l~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~--~~~~~~V~I~G~~-----e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 13 LQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRP--DDPSNQIKITGTK-----EGIEKARHEVLLISAEQ 85 (94)
T ss_dssp CCSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCT--TSSCCEEEEEECH-----HHHHHHHHHHHHHHHHH
T ss_pred hCCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCC--CCCCCeEEEEECH-----HHHHHHHHHHHHHhhcc
Confidence 4567899999999999999999999999999999999999965 2346889999984 37889999999888654
No 48
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.36 E-value=1.5e-12 Score=105.67 Aligned_cols=73 Identities=30% Similarity=0.466 Sum_probs=65.5
Q ss_pred eEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcCC
Q 025112 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221 (257)
Q Consensus 143 ~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e~~ 221 (257)
.+++++||.+.+|.|||++|++|++|+++|||+|+|.+. ..|. +.+|.|+|+|+++++.+|+.+|.+++.+..
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~-~~~~-----~~~r~v~I~G~~e~v~~A~~~I~~~~~e~~ 75 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPP-ETPD-----SKVRMVIITGPPEAQFKAQGRIYGKLKEEN 75 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCC-SSTT-----CSEEEEEEEECHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCC-CCCC-----CCceEEEEEcCHHHHHHHHHHHHHHHhccc
Confidence 478999999999999999999999999999999999643 3343 689999999999999999999999999863
No 49
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.36 E-value=8.9e-14 Score=104.73 Aligned_cols=66 Identities=17% Similarity=0.234 Sum_probs=59.8
Q ss_pred eEEEEEeecCccceeecCCChhHHHHHHH-hCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 025112 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNS-SGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (257)
Q Consensus 143 ~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~-tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e~ 220 (257)
.+..+.||..+|++|||++|++|++|+++ ++++|+|++ .++.|+|+|+++.|.+|..+|..++++.
T Consensus 27 ~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~------------~~~~ItI~G~~~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 27 TVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE------------GEDKITLEGPTEDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp EEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS------------SSCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC------------CCCEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999997 499999853 3578999999999999999999999873
No 50
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.34 E-value=1.7e-12 Score=106.55 Aligned_cols=73 Identities=26% Similarity=0.374 Sum_probs=65.2
Q ss_pred ceEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcCC
Q 025112 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRENP 221 (257)
Q Consensus 142 ~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e~~ 221 (257)
..+.+++||.+++|.|||++|++|++|+++|||+|+|.+.+ +. ..+|.|+|+|++++|.+|+.+|.+++.+..
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~--~~-----~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~ 74 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD--GT-----TPERIAQITGPPDRAQHAAEIITDLLRSVQ 74 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCT--TS-----CSEEEEEEEECHHHHHHHHHHHHHHHHHHC
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCC--CC-----CCccEEEEEeCHHHHHHHHHHHHHHHHhcc
Confidence 35789999999999999999999999999999999997432 22 578999999999999999999999999864
No 51
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.31 E-value=2.7e-12 Score=95.42 Aligned_cols=75 Identities=21% Similarity=0.288 Sum_probs=63.2
Q ss_pred CCCCCeEEEEEecCccccceeccCchhHHHHHhhhCceEEEcccccCCCccEEEeccCCCCchhhHHHHHHHHHHHHHhc
Q 025112 45 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILK 124 (257)
Q Consensus 45 ~~~~~~~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~A~~~I~~~i~~ 124 (257)
..+..+++.|.||.+.+|.|||++|++|++|+++|||+|+|++.. ...++.|+|+|.++ ++.+|+.+|..++.+
T Consensus 12 ~l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g-~~~~~~V~I~G~~e-----~v~~A~~~I~~i~~e 85 (95)
T 2ctm_A 12 ELEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSG-APDPNCVTVTGLPE-----NVEEAIDHILNLEEE 85 (95)
T ss_dssp CTTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTT-CSCTTEEEEESCHH-----HHHHHHHHHHHHHHH
T ss_pred hhcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCC-CCCCcEEEEEcCHH-----HHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999999998652 13578899999853 678888888888765
Q ss_pred C
Q 025112 125 D 125 (257)
Q Consensus 125 ~ 125 (257)
.
T Consensus 86 ~ 86 (95)
T 2ctm_A 86 Y 86 (95)
T ss_dssp H
T ss_pred H
Confidence 4
No 52
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.27 E-value=5e-12 Score=102.23 Aligned_cols=70 Identities=34% Similarity=0.617 Sum_probs=63.9
Q ss_pred ceEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Q 025112 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 220 (257)
Q Consensus 142 ~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e~ 220 (257)
...++++||...+|.|||++|++|++|+++|||+|+|.+. +..+|.|+|+|+++++.+|+.+|.+++.+.
T Consensus 4 ~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~---------~~~~r~v~I~G~~~~v~~A~~~I~~~i~e~ 73 (160)
T 2jzx_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG---------NCPERIITLAGPTNAIFKAFAMIIDKLEED 73 (160)
T ss_dssp EEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC---------TTTEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC---------CCCceEEEEEeCHHHHHHHHHHHHHHHHhh
Confidence 4689999999999999999999999999999999999743 146899999999999999999999999884
No 53
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.26 E-value=3.3e-12 Score=96.45 Aligned_cols=70 Identities=20% Similarity=0.287 Sum_probs=60.7
Q ss_pred CeEEEEEecCccccceeccCchhHHHHHhhhCceEEEcccccCCCccEEEeccCCCCchhhHHHHHHHHHHHHHhcC
Q 025112 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (257)
Q Consensus 49 ~~~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~A~~~I~~~i~~~ 125 (257)
.....|.||.+.+|.|||++|++||+|+++|||+|+|++. +...+.|+|+|..+ ++.+|..+|..++.+.
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~--g~~~~~V~I~G~~e-----~v~~A~~~I~~i~~e~ 85 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAP--ELQSDIIAITGLAA-----NLDRAKAGLLERVKEL 85 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCT--TTTCCEEEEEECHH-----HHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCC--CCCcceEEEEcCHH-----HHHHHHHHHHHHHhhH
Confidence 4789999999999999999999999999999999999975 33456899999853 6788888888887654
No 54
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.25 E-value=9.6e-12 Score=92.36 Aligned_cols=72 Identities=19% Similarity=0.236 Sum_probs=63.4
Q ss_pred cceEEEEEeecCccceeecCCChhHHHHHHHh-CCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 025112 141 AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSS-GATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219 (257)
Q Consensus 141 ~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~t-ga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e 219 (257)
...+..+.||..+++.|||++|.+|++|+++| ||+|+|+.. ++..+.|+|+|+..++++|+++|.+++.+
T Consensus 15 ~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~---------g~~~~~V~I~G~~~~v~~A~~~I~~iv~e 85 (95)
T 2ctj_A 15 NIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE---------GSGSDTVVIRGPSSDVEKAKKQLLHLAEE 85 (95)
T ss_dssp SSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT---------TTTCCEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred hcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC---------CCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 34578999999999999999999999999999 999998632 24567899999999999999999999987
Q ss_pred CC
Q 025112 220 NP 221 (257)
Q Consensus 220 ~~ 221 (257)
..
T Consensus 86 ~e 87 (95)
T 2ctj_A 86 KQ 87 (95)
T ss_dssp HS
T ss_pred hh
Confidence 43
No 55
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.22 E-value=3.6e-11 Score=90.38 Aligned_cols=67 Identities=24% Similarity=0.343 Sum_probs=58.0
Q ss_pred CeEEEEEecCccccceeccCchhHHHHHhhh-CceEEEcccccCCCccEEEeccCCCCchhhHHHHHHHHHHHHHhcC
Q 025112 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREET-KATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (257)
Q Consensus 49 ~~~~rilVP~~~vg~IIGk~G~~Ik~I~~~t-g~~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~A~~~I~~~i~~~ 125 (257)
.++.+|.||+.+|+.|||++|++||+|++++ +++|+|++ .++.|+|+|+++ .|.+|..+|..++.+.
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~-----~~~~ItI~G~~~-----~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE-----GEDKITLEGPTE-----DVSVAQEQIEGMVKDL 93 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS-----SSCEEEEEECHH-----HHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC-----CCCEEEEECCHH-----HHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999985 99999996 467899999954 6788888888777653
No 56
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.21 E-value=9.6e-12 Score=92.36 Aligned_cols=76 Identities=21% Similarity=0.315 Sum_probs=65.3
Q ss_pred cCCCCCeEEEEEecCccccceeccCchhHHHHHhhh-CceEEEcccccCCCccEEEeccCCCCchhhHHHHHHHHHHHHH
Q 025112 44 RAKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREET-KATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALI 122 (257)
Q Consensus 44 ~~~~~~~~~rilVP~~~vg~IIGk~G~~Ik~I~~~t-g~~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~A~~~I~~~i 122 (257)
+.+++..+..|.||.++++.|||++|.+|++|+++| ||+|+|++. ++..+.|+|+|+.+ .+.+|..+|.+++
T Consensus 11 ~e~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~--g~~~~~V~I~G~~~-----~v~~A~~~I~~iv 83 (95)
T 2ctj_A 11 KDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE--GSGSDTVVIRGPSS-----DVEKAKKQLLHLA 83 (95)
T ss_dssp CCCCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT--TTTCCEEEEESCHH-----HHHHHHHHHHHHH
T ss_pred HHHhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC--CCCcceEEEEcCHH-----HHHHHHHHHHHHH
Confidence 445677889999999999999999999999999999 999999975 45677899999853 6788899999988
Q ss_pred hcCC
Q 025112 123 LKDD 126 (257)
Q Consensus 123 ~~~~ 126 (257)
.+..
T Consensus 84 ~e~e 87 (95)
T 2ctj_A 84 EEKQ 87 (95)
T ss_dssp HHHS
T ss_pred hhhh
Confidence 7643
No 57
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=98.97 E-value=4.7e-10 Score=101.99 Aligned_cols=75 Identities=12% Similarity=0.098 Sum_probs=61.8
Q ss_pred CcceEEEEEeecCccceeecCCC--hhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHH
Q 025112 140 VAANTIRLLIAGSQAGCLIGMSG--QNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQ 216 (257)
Q Consensus 140 ~~~~~~~l~Vp~~~vG~iIGk~G--~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~ 216 (257)
...+++++.||..+|++||||+| ++|++|+++|||+|+|+..+. +.. ........|+|+|.+++|++|+.+|.++
T Consensus 27 ~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~-~~~-~~~~ks~~VtItG~~enVE~AR~~I~~l 103 (376)
T 3n89_A 27 PTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSV-GGT-TPDPFAQQVTITGYFGDVDRARMLMRRN 103 (376)
T ss_dssp TTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCC-CSS-SCCTTTTEEEEEEEHHHHHHHHHHHHHS
T ss_pred CCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcc-ccc-CCcCCCCeEEEEcCHHHHHHHHHHHHhc
Confidence 34679999999999999999999 999999999999999975430 000 0014567899999999999999999885
No 58
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.94 E-value=8.3e-10 Score=80.84 Aligned_cols=67 Identities=27% Similarity=0.247 Sum_probs=58.0
Q ss_pred cceEEEEEeecCccceeecCCChhHHHHHHHhCCe-EEEeCCCCCCcccCCCCCceEEEEEc-CHHHHHHHHHHHHHHHh
Q 025112 141 AANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGAT-IVILAPNQLPLCASAHESDRVVQISG-DVPAVLNALVEIGNQLR 218 (257)
Q Consensus 141 ~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~-I~i~~~~~~p~~~~~~~~~r~V~I~G-~~~~v~~A~~~I~~~l~ 218 (257)
..+...+.||.+.+|.+||++|++|++|++.|||+ |.+. +.+..|+|.| +.+++++|+++|..+-.
T Consensus 13 ~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~------------eddG~V~I~g~~~ea~~~A~~~I~~ie~ 80 (91)
T 2cpq_A 13 AAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELD------------EDTGTFRIYGESADAVKKARGFLEFVED 80 (91)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEE------------TTTTEEEEEESSHHHHHHHHHHHSCCCC
T ss_pred CceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEE------------cCCCEEEEEECCHHHHHHHHHHHHhhhe
Confidence 34688999999999999999999999999999998 9984 2358899999 88999999998866544
Q ss_pred c
Q 025112 219 E 219 (257)
Q Consensus 219 e 219 (257)
.
T Consensus 81 ~ 81 (91)
T 2cpq_A 81 F 81 (91)
T ss_dssp C
T ss_pred E
Confidence 4
No 59
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=98.87 E-value=1.4e-09 Score=86.65 Aligned_cols=69 Identities=26% Similarity=0.342 Sum_probs=57.1
Q ss_pred EEEEEecCccccceeccCchhHHHHHhhhCc-eEEEcccccC---CCcc--EEEeccCCCCchhhHHHHHHHHHHHHHhc
Q 025112 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKA-TIKIADAIAR---HEER--VIIISSKDNDNVVSDAENALQQIAALILK 124 (257)
Q Consensus 51 ~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~-~I~i~~~~~~---~~er--vv~I~G~~~~~~~~~~~~A~~~I~~~i~~ 124 (257)
..++.||.+.+|++|||+|.+||.|++.||+ +|+|...... ..++ .|+|+|+. .++++|..+|.+++..
T Consensus 68 e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~-----~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 68 EDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTK-----DSIANATVLLDYHLNY 142 (144)
T ss_dssp EEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEH-----HHHHHHHHHHHHHHHT
T ss_pred eEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCH-----HHHHHHHHHHHHHHHh
Confidence 3889999999999999999999999999997 9999854211 2333 48899985 4788999999988864
No 60
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.85 E-value=2.2e-09 Score=78.63 Aligned_cols=53 Identities=23% Similarity=0.329 Sum_probs=47.0
Q ss_pred CCCCeEEEEEecCccccceeccCchhHHHHHhhhCce-EEEcccccCCCccEEEeccCC
Q 025112 46 KAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKAT-IKIADAIARHEERVIIISSKD 103 (257)
Q Consensus 46 ~~~~~~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~-I~i~~~~~~~~ervv~I~G~~ 103 (257)
....+...|.||.+.+|.+||++|.+|++|+++||++ |+|.+ ++..|.|.|..
T Consensus 11 ~~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e-----ddG~V~I~g~~ 64 (91)
T 2cpq_A 11 LAAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE-----DTGTFRIYGES 64 (91)
T ss_dssp SSCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET-----TTTEEEEEESS
T ss_pred ccCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc-----CCCEEEEEECC
Confidence 3456889999999999999999999999999999998 99974 35789999964
No 61
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.75 E-value=3.7e-08 Score=77.07 Aligned_cols=78 Identities=18% Similarity=0.290 Sum_probs=60.6
Q ss_pred ceEEEEEeecC------ccceeecCCChhHHHHHHHhCCeEEEeCCCCCCccc---------CCCCCceEEEEEc-CHHH
Q 025112 142 ANTIRLLIAGS------QAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCA---------SAHESDRVVQISG-DVPA 205 (257)
Q Consensus 142 ~~~~~l~Vp~~------~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~---------~~~~~~r~V~I~G-~~~~ 205 (257)
..+.++.||.. ++|.|||++|.+||+|+++|||+|.|-.+....... ...+.+-.|.|++ +.+.
T Consensus 6 k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~ 85 (131)
T 1k1g_A 6 RVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMEN 85 (131)
T ss_dssp CEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHH
T ss_pred eEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHH
Confidence 35789999987 889999999999999999999999996422111000 0012366899999 5789
Q ss_pred HHHHHHHHHHHHhc
Q 025112 206 VLNALVEIGNQLRE 219 (257)
Q Consensus 206 v~~A~~~I~~~l~e 219 (257)
+++|+++|..+|.+
T Consensus 86 ~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 86 VKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999987
No 62
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.73 E-value=2.2e-08 Score=78.39 Aligned_cols=73 Identities=21% Similarity=0.398 Sum_probs=59.1
Q ss_pred CCeEEEEEecCc------cccceeccCchhHHHHHhhhCceEEEccccc----------------CCCccEEEeccCCCC
Q 025112 48 QDVLFRIIVPSR------QIGKVIGKEGHRIQKIREETKATIKIADAIA----------------RHEERVIIISSKDND 105 (257)
Q Consensus 48 ~~~~~rilVP~~------~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~----------------~~~ervv~I~G~~~~ 105 (257)
..++.+|.||.+ ++|.|||++|.+||+|+++|||+|.|..... ..++--|.|++...
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~- 83 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTM- 83 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSH-
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCH-
Confidence 457889999988 8899999999999999999999999985210 01255688888643
Q ss_pred chhhHHHHHHHHHHHHHhc
Q 025112 106 NVVSDAENALQQIAALILK 124 (257)
Q Consensus 106 ~~~~~~~~A~~~I~~~i~~ 124 (257)
..+.+|+.+|..++.+
T Consensus 84 ---e~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 84 ---ENVKKAVEQIRNILKQ 99 (131)
T ss_dssp ---HHHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHHHHHhc
Confidence 4788999999999875
No 63
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.70 E-value=2.1e-08 Score=77.13 Aligned_cols=72 Identities=22% Similarity=0.128 Sum_probs=55.4
Q ss_pred CeEEEEEecCc-------cccceeccCchhHHHHHhhhCceEEEccccc----------CCCccEEEeccCCCCchhhHH
Q 025112 49 DVLFRIIVPSR-------QIGKVIGKEGHRIQKIREETKATIKIADAIA----------RHEERVIIISSKDNDNVVSDA 111 (257)
Q Consensus 49 ~~~~rilVP~~-------~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~----------~~~ervv~I~G~~~~~~~~~~ 111 (257)
.+..||.||.+ .+|.|||++|.+||+|+++|||+|.|..... ..++-.|.|.+... .++
T Consensus 11 ~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~----e~i 86 (119)
T 2yqr_A 11 YVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKP----EGL 86 (119)
T ss_dssp CEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSH----HHH
T ss_pred EEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCH----HHH
Confidence 36678888875 6999999999999999999999999973310 01344688887643 467
Q ss_pred HHHHHHHHHHHhc
Q 025112 112 ENALQQIAALILK 124 (257)
Q Consensus 112 ~~A~~~I~~~i~~ 124 (257)
.+|+.+|.+++..
T Consensus 87 ~~A~~~Ie~Ll~~ 99 (119)
T 2yqr_A 87 AAAKKLCENLLQT 99 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc
Confidence 8898888888865
No 64
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.64 E-value=7.7e-08 Score=73.96 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=56.7
Q ss_pred eEEEEEeecC-------ccceeecCCChhHHHHHHHhCCeEEEeCCCCC---CcccCCCCCceEEEEEc-CHHHHHHHHH
Q 025112 143 NTIRLLIAGS-------QAGCLIGMSGQNIEKLRNSSGATIVILAPNQL---PLCASAHESDRVVQISG-DVPAVLNALV 211 (257)
Q Consensus 143 ~~~~l~Vp~~-------~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~---p~~~~~~~~~r~V~I~G-~~~~v~~A~~ 211 (257)
...+|.||-. ++|.|||++|.+||+|+++|||+|.|-.+... +........+-.|.|.+ +.+++++|++
T Consensus 12 ~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~ 91 (119)
T 2yqr_A 12 VQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKK 91 (119)
T ss_dssp EEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHHH
T ss_pred EEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHHH
Confidence 4677888754 78999999999999999999999999532110 00000002345788886 5889999999
Q ss_pred HHHHHHhc
Q 025112 212 EIGNQLRE 219 (257)
Q Consensus 212 ~I~~~l~e 219 (257)
+|.++|.+
T Consensus 92 ~Ie~Ll~~ 99 (119)
T 2yqr_A 92 LCENLLQT 99 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhc
Confidence 99999986
No 65
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.57 E-value=6.7e-08 Score=82.00 Aligned_cols=66 Identities=21% Similarity=0.149 Sum_probs=58.3
Q ss_pred ceEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcC-----HHHHHHHHHHHHHH
Q 025112 142 ANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGD-----VPAVLNALVEIGNQ 216 (257)
Q Consensus 142 ~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~-----~~~v~~A~~~I~~~ 216 (257)
....++.||.+.+|.|||++|.+|+.|+++|||+|++. ..++.|+|.|+ ++++++|..+|..+
T Consensus 33 P~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~------------~~~g~V~I~~~~~t~d~~~i~kA~~~I~~i 100 (219)
T 2e3u_A 33 KQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITID------------SETGEVWITSTKETEDPLAVWKARDIVLAI 100 (219)
T ss_dssp CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEEC------------TTTCEEEEEECTTCCSHHHHHHHHHHHHHH
T ss_pred CEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEE------------cCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 35679999999999999999999999999999999984 23567899886 69999999999999
Q ss_pred Hhc
Q 025112 217 LRE 219 (257)
Q Consensus 217 l~e 219 (257)
++.
T Consensus 101 ~rg 103 (219)
T 2e3u_A 101 GRG 103 (219)
T ss_dssp HTT
T ss_pred hcc
Confidence 854
No 66
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.52 E-value=1.6e-07 Score=74.04 Aligned_cols=75 Identities=17% Similarity=0.404 Sum_probs=55.3
Q ss_pred eEEEEEecCcc------ccceeccCchhHHHHHhhhCceEEEcccccC------------------CCccEEEeccCCCC
Q 025112 50 VLFRIIVPSRQ------IGKVIGKEGHRIQKIREETKATIKIADAIAR------------------HEERVIIISSKDND 105 (257)
Q Consensus 50 ~~~rilVP~~~------vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~------------------~~ervv~I~G~~~~ 105 (257)
++-|+.||.+. +|.|||++|.++|+|+++|||+|.|-..-.. ...--|.|++....
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 56788999766 9999999999999999999999999853100 01125778885432
Q ss_pred -chhhHHHHHHHHHHHHHhc
Q 025112 106 -NVVSDAENALQQIAALILK 124 (257)
Q Consensus 106 -~~~~~~~~A~~~I~~~i~~ 124 (257)
.....+++|+.+|.+++..
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p 101 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVP 101 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSC
T ss_pred hhHHHHHHHHHHHHHHHCCC
Confidence 1223578899999998864
No 67
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=98.39 E-value=5.4e-07 Score=74.79 Aligned_cols=69 Identities=16% Similarity=0.240 Sum_probs=61.4
Q ss_pred EEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEE-----cCHHHHHHHHHHHHHHHh
Q 025112 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQIS-----GDVPAVLNALVEIGNQLR 218 (257)
Q Consensus 144 ~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~-----G~~~~v~~A~~~I~~~l~ 218 (257)
..++.||.+.+|.|||++|++++.|++.+|++|++. ..++.|+|. |++.++.+|..+|..+.+
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id------------~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~r 72 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVD------------TENSMVIVEPEAEGIPPVNLMKAAEVVKAISL 72 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEE------------TTTTEEEEEESSTTSCHHHHHHHHHHHHHHHH
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEE------------cCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence 468999999999999999999999999999999984 346788999 999999999999999888
Q ss_pred cCCCCC
Q 025112 219 ENPPRQ 224 (257)
Q Consensus 219 e~~~~~ 224 (257)
.++..+
T Consensus 73 gf~~e~ 78 (191)
T 1tua_A 73 GFPPEK 78 (191)
T ss_dssp TCCHHH
T ss_pred CCCHHH
Confidence 765443
No 68
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.36 E-value=5.4e-07 Score=71.00 Aligned_cols=78 Identities=17% Similarity=0.232 Sum_probs=56.3
Q ss_pred EEEEEeecC------ccceeecCCChhHHHHHHHhCCeEEEeCCCCCCc------------ccCCCCCceEEEEEcC-HH
Q 025112 144 TIRLLIAGS------QAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPL------------CASAHESDRVVQISGD-VP 204 (257)
Q Consensus 144 ~~~l~Vp~~------~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~------------~~~~~~~~r~V~I~G~-~~ 204 (257)
+.+|.||.. ++|.|||++|.++|+|+++|||+|.|--+...-. ... .+.+--|.|++. ++
T Consensus 3 ~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~-~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 3 QEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEH-LNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHT-TTSCCEEEEEECSCC
T ss_pred eeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccc-cCCCcEEEEEecCch
Confidence 567888844 5999999999999999999999999964321100 000 012237889984 32
Q ss_pred -----HHHHHHHHHHHHHhcCCC
Q 025112 205 -----AVLNALVEIGNQLRENPP 222 (257)
Q Consensus 205 -----~v~~A~~~I~~~l~e~~~ 222 (257)
.+++|+++|..+|...++
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p~~e 104 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVPAAE 104 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSS
T ss_pred hhHHHHHHHHHHHHHHHCCCCCc
Confidence 789999999999986443
No 69
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=98.34 E-value=5.2e-07 Score=87.41 Aligned_cols=93 Identities=17% Similarity=0.178 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCchhhhhccCCCcceEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcc
Q 025112 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLC 187 (257)
Q Consensus 108 ~~~~~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~ 187 (257)
+..+.+++..|++.+.+........ .....+....+.||.+.+|.|||+||++||.|+++|||+|.|.
T Consensus 536 L~~A~~g~~~I~~~m~~al~~~~~~----~~~~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~-------- 603 (630)
T 3u1k_A 536 IQQASVAKKEILQIMNKTISKPRAS----RKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV-------- 603 (630)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCCSS----CCTTCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh----hcccCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEc--------
Confidence 3456777788888776543321110 0112245788999999999999999999999999999999983
Q ss_pred cCCCCCceEEEEEcC-HHHHHHHHHHHHHHH
Q 025112 188 ASAHESDRVVQISGD-VPAVLNALVEIGNQL 217 (257)
Q Consensus 188 ~~~~~~~r~V~I~G~-~~~v~~A~~~I~~~l 217 (257)
.+..|.|.|. .+..++|+++|..++
T Consensus 604 -----d~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 604 -----DEETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp -----SSSEEEEEESSHHHHHHHHHHTTC--
T ss_pred -----CCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 3467999996 578999999987664
No 70
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=98.13 E-value=1.9e-06 Score=68.22 Aligned_cols=104 Identities=16% Similarity=0.253 Sum_probs=73.8
Q ss_pred eEEEEEecCccccceeccCchhHHHHHhhhCceEEEcccccCCCccEEEeccCCCCchhhHHHHHHHHHHHHHhcCCCCC
Q 025112 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSN 129 (257)
Q Consensus 50 ~~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~A~~~I~~~i~~~~~~~ 129 (257)
-.+.|+|+...+|+.||++|++|+.|+++.|-+|++-... ++ + ...|...+.-.....
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s---~d--------~-----------~~fI~naLsPA~V~~ 93 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYS---SD--------L-----------ERIVKNLFPGVKIES 93 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECC---SS--------H-----------HHHHHHHSTTSCEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcC---CC--------H-----------HHHHHHhcCCceEEE
Confidence 4689999999999999999999999999999999987541 11 0 111222221100000
Q ss_pred chhhhhccCCCcceEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEe
Q 025112 130 SEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVIL 179 (257)
Q Consensus 130 ~~~~~~~~~~~~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~ 179 (257)
. ..... .+.....+.||.++.+..|||+|.+++-..+-||.+|.|.
T Consensus 94 V---~i~~~-~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 94 I---NVRER-NGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp E---EEEEE-TTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred E---EEeec-CCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 0 00000 1235788999999999999999999999999999988874
No 71
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=98.08 E-value=1.1e-05 Score=62.66 Aligned_cols=67 Identities=16% Similarity=0.136 Sum_probs=58.7
Q ss_pred EEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHh
Q 025112 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLR 218 (257)
Q Consensus 144 ~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~ 218 (257)
...+.+.+..++.|||++|+.|+.|+..|++.|++..-+. ++...|+|.|++..-..|..+|..+..
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s--------~g~tEVtIfG~~~~Q~rak~MI~sLA~ 123 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGP--------ERRAEIWIFGPPPFRRDVDRMLTDLAH 123 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCT--------TSCEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCC--------CCcEEEEEECCHHHHHHHHHHHHHHHH
Confidence 4788899999999999999999999999999999975321 457889999999999999999987664
No 72
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.88 E-value=6.6e-06 Score=80.72 Aligned_cols=100 Identities=21% Similarity=0.241 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCchhhhhccCCCcceEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcc
Q 025112 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLC 187 (257)
Q Consensus 108 ~~~~~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~ 187 (257)
+..+.+++..|++.+.+.....-.. .....+....+.||.+.++.|||+||.+||.|+++||++|.+.
T Consensus 539 L~~A~~g~~~I~~~m~~al~~~r~~----~~~~ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~-------- 606 (726)
T 4aid_A 539 LAQAKEGRAHILGEMNKAMDAPRAD----VGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIN-------- 606 (726)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCSS----CCSSCCC--------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh----hcccCCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEE--------
Confidence 4456777788888876653321110 1112234678889999999999999999999999999999983
Q ss_pred cCCCCCceEEEEEcC-HHHHHHHHHHHHHHHhcCCCCC
Q 025112 188 ASAHESDRVVQISGD-VPAVLNALVEIGNQLRENPPRQ 224 (257)
Q Consensus 188 ~~~~~~~r~V~I~G~-~~~v~~A~~~I~~~l~e~~~~~ 224 (257)
.+..|.|.+. .+.+++|+.+|..++.+....+
T Consensus 607 -----ddG~v~I~~~~~~~~~~A~~~i~~i~~~~~vG~ 639 (726)
T 4aid_A 607 -----DDGVVKVSASDGAKIKAAIDWIKSITDEAEVGK 639 (726)
T ss_dssp ------------CCSCHHHHHHHHHC------------
T ss_pred -----CCceEEEEeCCHHHHHHHHHHHHHHhhhhcCCc
Confidence 2456778775 7799999999999887654443
No 73
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.83 E-value=5.3e-06 Score=80.39 Aligned_cols=63 Identities=25% Similarity=0.341 Sum_probs=51.1
Q ss_pred CeEEEEEecCccccceeccCchhHHHHHhhhCceEEEcccccCCCccEEEeccCCCCchhhHHHHHHHHHHHH
Q 025112 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAAL 121 (257)
Q Consensus 49 ~~~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~A~~~I~~~ 121 (257)
.-...|.||.+.+|.|||+||.+||+|+++|||+|+|.+ +..|.|.|... ..+.+|+.+|..+
T Consensus 566 p~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d------~G~V~I~~~~~----~~~~~A~~~I~~i 628 (630)
T 3u1k_A 566 PVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD------EETFSVFAPTP----SAMHEARDFITEI 628 (630)
T ss_dssp CEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS------SSEEEEEESSH----HHHHHHHHHTTC-
T ss_pred CeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC------CcEEEEEeCCH----HHHHHHHHHHHHH
Confidence 457889999999999999999999999999999999984 45789988643 2556777666544
No 74
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.54 E-value=0.00017 Score=56.02 Aligned_cols=67 Identities=16% Similarity=0.147 Sum_probs=53.1
Q ss_pred eEEEEEecCccccceeccCchhHHHHHhhhCceEEEcccccCCCccEEEeccCCCCchhhHHHHHHHHHHHHH
Q 025112 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALI 122 (257)
Q Consensus 50 ~~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~A~~~I~~~i 122 (257)
-.+.|.|.+..++.|+|++|+.|+.|+..|++.|++..-.+ +.+-.|+|.|++. .=.++..+|..+.
T Consensus 56 dPlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s-~g~tEVtIfG~~~-----~Q~rak~MI~sLA 122 (140)
T 3v69_A 56 DPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGP-ERRAEIWIFGPPP-----FRRDVDRMLTDLA 122 (140)
T ss_dssp SCEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCT-TSCEEEEEESCHH-----HHHHHHHHHHHHH
T ss_pred CCeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCC-CCcEEEEEECCHH-----HHHHHHHHHHHHH
Confidence 45778889999999999999999999999999999996643 4567799999853 2235556665544
No 75
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=97.28 E-value=3.7e-05 Score=65.99 Aligned_cols=106 Identities=23% Similarity=0.250 Sum_probs=70.5
Q ss_pred EEEEEecC-----ccccceeccCchhHHHH-HhhhCceEEEcccccCCCccEEEeccCCCCchhhHHHHHHHHHHHHHhc
Q 025112 51 LFRIIVPS-----RQIGKVIGKEGHRIQKI-REETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILK 124 (257)
Q Consensus 51 ~~rilVP~-----~~vg~IIGk~G~~Ik~I-~~~tg~~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~A~~~I~~~i~~ 124 (257)
-.++-|-+ +-+|+.||++|++|+.| ++-.|-+|+|-... ++ ....|...+.-
T Consensus 113 R~KiAV~s~d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi~~s---~d-------------------p~~fi~nalsP 170 (251)
T 2asb_A 113 RSKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYD---DD-------------------PARFVANALSP 170 (251)
T ss_dssp EEEEEEEESSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEECC---SS-------------------HHHHHHHHTTT
T ss_pred eeEEEEEcCCCCCCHHHHHhCCCchHHHHHHHHhCCCeEEEEEec---CC-------------------HHHHHHhccCC
Confidence 34555544 34999999999999999 67788888887541 11 01122222211
Q ss_pred CCCCCchhhhhccCCCcceEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCC
Q 025112 125 DDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ 183 (257)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~ 183 (257)
....... ..........+.||..+.+.-|||+|.|++-..+-||.+|.|.+..+
T Consensus 171 A~V~~V~-----i~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 224 (251)
T 2asb_A 171 AKVVSVS-----VIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 224 (251)
T ss_dssp SCCSEEE-----EEETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESSC
T ss_pred cceEEEE-----EEcCCCcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHHH
Confidence 1110000 00001146899999999999999999999999999999999976443
No 76
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=97.13 E-value=0.00043 Score=62.57 Aligned_cols=107 Identities=23% Similarity=0.259 Sum_probs=73.2
Q ss_pred eEEEEEecC-----ccccceeccCchhHHHHHhhh-CceEEEcccccCCCccEEEeccCCCCchhhHHHHHHHHHHHHHh
Q 025112 50 VLFRIIVPS-----RQIGKVIGKEGHRIQKIREET-KATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALIL 123 (257)
Q Consensus 50 ~~~rilVP~-----~~vg~IIGk~G~~Ik~I~~~t-g~~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~A~~~I~~~i~ 123 (257)
.-.++-|-+ +-+|+.||++|++|+.|.++. |-+|+|-... ++ -...|...+.
T Consensus 235 ~RaKIAV~s~d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi~~s---~d-------------------p~~fi~nals 292 (366)
T 1k0r_A 235 HRSKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYD---DD-------------------PARFVANALS 292 (366)
T ss_dssp TEEEEEEEESSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEECC---SS-------------------HHHHHHHHTT
T ss_pred CeEEEEEEeCCCCCCCcccccCCcchHHHHHHHHhCCCeEEEEEcC---CC-------------------HHHHHHHhcC
Confidence 445666655 569999999999999999998 8888887541 11 0112222222
Q ss_pred cCCCCCchhhhhccCCCcceEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCC
Q 025112 124 KDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQ 183 (257)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~ 183 (257)
-....... . . ........+.||..+.+..|||+|.|++-..+-||.+|.|.+..+
T Consensus 293 PA~V~~V~---~-~-~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 347 (366)
T 1k0r_A 293 PAKVVSVS---V-I-DQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 347 (366)
T ss_dssp TSCCSEEE---E-E-ETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESSC
T ss_pred CcceeEEE---E-E-cCCCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHHH
Confidence 11110000 0 0 011247899999999999999999999999999999999976433
No 77
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.07 E-value=0.00012 Score=71.75 Aligned_cols=65 Identities=28% Similarity=0.441 Sum_probs=9.3
Q ss_pred eEEEEEecCccccceeccCchhHHHHHhhhCceEEEcccccCCCccEEEeccCCCCchhhHHHHHHHHHHHHHhc
Q 025112 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILK 124 (257)
Q Consensus 50 ~~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~A~~~I~~~i~~ 124 (257)
-...|.||.+.++.|||+||.+||+|+++||++|+|.+ +..|.|.+... .++.+|+.+|..++.+
T Consensus 570 ~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d------dG~v~I~~~~~----~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 570 KIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND------DGVVKVSASDG----AKIKAAIDWIKSITDE 634 (726)
T ss_dssp C-------------------------------------------------CCSCH----HHHHHHHHC-------
T ss_pred eEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC------CceEEEEeCCH----HHHHHHHHHHHHHhhh
Confidence 35678889999999999999999999999999999984 34578888643 3566777777766643
No 78
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=96.69 E-value=0.002 Score=57.88 Aligned_cols=96 Identities=24% Similarity=0.260 Sum_probs=65.5
Q ss_pred ccccceeccCchhHHHHHhhh-CceEEEcccccCCCccEEEeccCCCCchhhHHHHHHHHHHHHHhcCCCCCchhhhhcc
Q 025112 59 RQIGKVIGKEGHRIQKIREET-KATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAA 137 (257)
Q Consensus 59 ~~vg~IIGk~G~~Ik~I~~~t-g~~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~A~~~I~~~i~~~~~~~~~~~~~~~ 137 (257)
+-+|+.||.+|.+|+.|.++. |-+|++-... ++ -...|...|.-...... ..
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~s---~d-------------------~~~fi~nal~Pa~v~~v-----~~ 297 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWS---DD-------------------PKQLIANALAPATVIEV-----EI 297 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEECC---SS-------------------HHHHHHHHTCSSCCSEE-----EE
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEecC---CC-------------------HHHHHHHhcCccEEEEE-----EE
Confidence 348999999999999999997 7777776441 11 11222222211111000 00
Q ss_pred CCCcceEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCC
Q 025112 138 GHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAP 181 (257)
Q Consensus 138 ~~~~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~ 181 (257)
.........+.||..+.+.-|||+|.|++-..+-||.+|.|.+.
T Consensus 298 ~d~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 298 LDKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp EETTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred EcCCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 00112478999999999999999999999999999999999653
No 79
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=96.66 E-value=0.00056 Score=67.23 Aligned_cols=99 Identities=20% Similarity=0.203 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCchhhhhccCCCcceEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcc
Q 025112 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLC 187 (257)
Q Consensus 108 ~~~~~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~ 187 (257)
+..+.+++..|++.+.+.........+ ...+....+.||.+.++.+||++|.+|+.|.++||+.|.+.
T Consensus 529 l~~A~~~~~~I~~~m~~al~~~~~~~~----~~ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~-------- 596 (723)
T 3cdi_A 529 LNQAKGARLHILGVMEQAINAPRGDIS----EFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE-------- 596 (723)
T ss_dssp HHHHHHHHHHHHHHHHHHCC------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhcchhcc----ccCceEEEEEECHHHhcccccccceeeeeeehhhCceEEec--------
Confidence 345567777777777654322111100 11234567889999999999999999999999999999873
Q ss_pred cCCCCCceEEEEEcC-HHHHHHHHHHHHHHHhcCCCC
Q 025112 188 ASAHESDRVVQISGD-VPAVLNALVEIGNQLRENPPR 223 (257)
Q Consensus 188 ~~~~~~~r~V~I~G~-~~~v~~A~~~I~~~l~e~~~~ 223 (257)
.+..|.|.+. ....++|.++|..++.+....
T Consensus 597 -----~dg~v~I~~~~~~~~~~a~~~i~~i~~~~~vG 628 (723)
T 3cdi_A 597 -----DDGTVKIAATDGEKAKHAIRRIEEITAEIEVG 628 (723)
T ss_dssp -------------------------------------
T ss_pred -----CCccEEEecCCHHHHHHHHHHHHHHhhhhhcC
Confidence 2456777765 567788888887776553333
No 80
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=95.98 E-value=0.00048 Score=68.00 Aligned_cols=92 Identities=24% Similarity=0.302 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCchhhhhccCCCcceEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcc
Q 025112 108 VSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLC 187 (257)
Q Consensus 108 ~~~~~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~ 187 (257)
+..+.+++..|++.+.+..... ... ....+....+.||.+.+|.+||++|.+||.|+++||+.|.+.
T Consensus 568 L~~A~~~~~~I~~~m~~al~~~-~~~----~~~ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~-------- 634 (757)
T 1e3p_A 568 LKQARDARLHILDVMMEAIDTP-DEM----SPNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIE-------- 634 (757)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSC-CCC----CTTSCBCCCC------------------CTTCCCCCSCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHhccc-ccc----cccCceeEEEEEChHHeehcccccceeeehhhHhhCCEEEec--------
Confidence 3456677777888776543322 111 111223456789999999999999999999999999999983
Q ss_pred cCCCCCceEEEEEcC-HHHHHHHHHHHHHHH
Q 025112 188 ASAHESDRVVQISGD-VPAVLNALVEIGNQL 217 (257)
Q Consensus 188 ~~~~~~~r~V~I~G~-~~~v~~A~~~I~~~l 217 (257)
.+..|.|.+. ....++|.++|..+.
T Consensus 635 -----~dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 635 -----DDGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp ----------CCCBSSHHHHCC---------
T ss_pred -----CCceEEEecCCHHHHHHHHHHHHHhc
Confidence 2456777764 567777776776655
No 81
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=94.74 E-value=0.0053 Score=60.36 Aligned_cols=64 Identities=31% Similarity=0.519 Sum_probs=0.0
Q ss_pred CeEEEEEecCccccceeccCchhHHHHHhhhCceEEEcccccCCCccEEEeccCCCCchhhHHHHHHHHHHHHH
Q 025112 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKDNDNVVSDAENALQQIAALI 122 (257)
Q Consensus 49 ~~~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervv~I~G~~~~~~~~~~~~A~~~I~~~i 122 (257)
.-...+.||.+.++.+||++|.+|+.|.++||+.|++.+ +..+.|.+.... .+.+|..+|..++
T Consensus 559 p~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~------dg~v~I~~~~~~----~~~~a~~~i~~i~ 622 (723)
T 3cdi_A 559 PRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED------DGTVKIAATDGE----KAKHAIRRIEEIT 622 (723)
T ss_dssp --------------------------------------------------------------------------
T ss_pred ceEEEEEECHHHhcccccccceeeeeeehhhCceEEecC------CccEEEecCCHH----HHHHHHHHHHHHh
Confidence 345677889999999999999999999999999998874 345777765432 3445555555444
No 82
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=93.54 E-value=0.0055 Score=60.49 Aligned_cols=46 Identities=37% Similarity=0.630 Sum_probs=16.7
Q ss_pred EEEEecCccccceeccCchhHHHHHhhhCceEEEcccccCCCccEEEeccCC
Q 025112 52 FRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADAIARHEERVIIISSKD 103 (257)
Q Consensus 52 ~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~ervv~I~G~~ 103 (257)
..|.||.+.+|.+||++|.+||+|+++||+.|+|.+ +..|.|+...
T Consensus 600 ~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~------dG~v~Is~~~ 645 (757)
T 1e3p_A 600 ITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED------DGTIYIGAAD 645 (757)
T ss_dssp CCC------------------CTTCCCCCSCC--------------CCCBSS
T ss_pred EEEEEChHHeehcccccceeeehhhHhhCCEEEecC------CceEEEecCC
Confidence 457789999999999999999999999999999884 4567777764
No 83
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=92.55 E-value=0.079 Score=41.57 Aligned_cols=38 Identities=32% Similarity=0.535 Sum_probs=35.3
Q ss_pred eEEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeC
Q 025112 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILA 180 (257)
Q Consensus 143 ~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~ 180 (257)
....++|+...+|..||++|++|+.|+++.|-+|.+..
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~ 73 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVE 73 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEE
Confidence 36889999999999999999999999999999999875
No 84
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=90.52 E-value=0.22 Score=42.60 Aligned_cols=40 Identities=30% Similarity=0.359 Sum_probs=36.7
Q ss_pred CeEEEEEecCccccceeccCchhHHHHHhhhCceEEEccc
Q 025112 49 DVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88 (257)
Q Consensus 49 ~~~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~ 88 (257)
.....+.||.++.+..|||+|.|++.-.+-||.+|+|.+.
T Consensus 183 ~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 222 (251)
T 2asb_A 183 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 222 (251)
T ss_dssp TTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEES
T ss_pred CcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEH
Confidence 3578999999999999999999999999999999999754
No 85
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=89.07 E-value=0.25 Score=44.22 Aligned_cols=41 Identities=27% Similarity=0.375 Sum_probs=37.3
Q ss_pred CCCeEEEEEecCccccceeccCchhHHHHHhhhCceEEEcc
Q 025112 47 AQDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIAD 87 (257)
Q Consensus 47 ~~~~~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~ 87 (257)
++.....+.||..+.+..|||+|.|++.-.+-||.+|+|..
T Consensus 300 ~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s 340 (344)
T 1hh2_P 300 KENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 (344)
T ss_dssp TTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred CCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceee
Confidence 34567899999999999999999999999999999999863
No 86
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=87.96 E-value=0.31 Score=43.92 Aligned_cols=41 Identities=29% Similarity=0.350 Sum_probs=37.3
Q ss_pred CCeEEEEEecCccccceeccCchhHHHHHhhhCceEEEccc
Q 025112 48 QDVLFRIIVPSRQIGKVIGKEGHRIQKIREETKATIKIADA 88 (257)
Q Consensus 48 ~~~~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~i~~~ 88 (257)
.+....+.||....+..|||+|.|++-..+-||.+|+|...
T Consensus 305 ~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 345 (366)
T 1k0r_A 305 TARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 345 (366)
T ss_dssp TTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEES
T ss_pred CCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEH
Confidence 35678999999999999999999999999999999999744
No 87
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=86.36 E-value=0.35 Score=38.21 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=26.8
Q ss_pred eEEEEEecCccccceeccCchhHHHHHhhhC
Q 025112 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREETK 80 (257)
Q Consensus 50 ~~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg 80 (257)
-++.|.+..+..|.||||.|.+++.||--+.
T Consensus 33 ~~i~i~i~ged~glLIGK~G~TL~ALQyL~~ 63 (152)
T 2pt7_G 33 GVLLIDIDGEDSALLIGEKGYRYKALSYLLF 63 (152)
T ss_dssp TEEEEEEEEGGGTTTTCGGGHHHHHHHHHHH
T ss_pred CEEEEEEecCCcceEECCCCcchHHHHHHHH
Confidence 3567777889999999999999999998874
No 88
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=80.88 E-value=0.63 Score=33.50 Aligned_cols=28 Identities=25% Similarity=0.488 Sum_probs=24.3
Q ss_pred EEEEEecCccccceeccCchhHHHHHhh
Q 025112 51 LFRIIVPSRQIGKVIGKEGHRIQKIREE 78 (257)
Q Consensus 51 ~~rilVP~~~vg~IIGk~G~~Ik~I~~~ 78 (257)
.+++.|....-|.|||++|..|++|+++
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 4678888899999999999999888765
No 89
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=75.25 E-value=1.2 Score=31.89 Aligned_cols=27 Identities=19% Similarity=0.447 Sum_probs=23.4
Q ss_pred EEEEEeecCccceeecCCChhHHHHHH
Q 025112 144 TIRLLIAGSQAGCLIGMSGQNIEKLRN 170 (257)
Q Consensus 144 ~~~l~Vp~~~vG~iIGk~G~~Ik~I~~ 170 (257)
..++.|....-|.|||++|+.|++|+.
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~ 62 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTA 62 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHH
Confidence 578888888899999999999988763
No 90
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=72.58 E-value=1.8 Score=34.02 Aligned_cols=65 Identities=15% Similarity=0.009 Sum_probs=40.5
Q ss_pred EEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 025112 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219 (257)
Q Consensus 144 ~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e 219 (257)
++.+.+.....|.||||.|.+++.||--+...+.-.. .-.-.+-|-|--+.-++.++.+...+.+
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~vn~~~-----------~~~V~LDve~YRerReetL~~lA~~~A~ 98 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLFNWIHPTY-----------GYSIRLEISTFLQNQEKVMDTQLQSVIM 98 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHHHHHHH-----------SCEEEEEETTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHHHHhhhcC-----------CceEEEEhHHhHHHHHHHHHHHHHHHHH
Confidence 5778888999999999999999999855433222100 1112234444455556666655555554
No 91
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=63.16 E-value=2.2 Score=35.70 Aligned_cols=34 Identities=15% Similarity=0.370 Sum_probs=27.8
Q ss_pred EEEEEecCccccceeccCchhHHHHHhhhCceEE
Q 025112 51 LFRIIVPSRQIGKVIGKEGHRIQKIREETKATIK 84 (257)
Q Consensus 51 ~~rilVP~~~vg~IIGk~G~~Ik~I~~~tg~~I~ 84 (257)
.+.|.+.....|.+|||.|.+++.||.-+..-++
T Consensus 93 ~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn 126 (225)
T 3gku_A 93 EMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVN 126 (225)
T ss_dssp EEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCccceeecCCCeEhHHHHHHHHHHHH
Confidence 4566667888999999999999999998874443
No 92
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=62.23 E-value=24 Score=29.26 Aligned_cols=62 Identities=23% Similarity=0.200 Sum_probs=45.8
Q ss_pred EEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 025112 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219 (257)
Q Consensus 145 ~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e 219 (257)
.-+.++...+.+++|+++..++.|.+.+++.|-+- ..-.|=|.++......+...|..+=.+
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG-------------~NG~IWi~~~~~~~~~~~~ai~~~e~~ 199 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVG-------------QNGLIWVNGDRRKVSIAEEAIYLIEQE 199 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEEC-------------TTSEEEEESCHHHHHHHHHHHHHHHHC
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEE-------------CCcEEEEeCCchhHHHHHHHHHHHHhh
Confidence 44578888899999999999999999999999873 234456889887555555555444333
No 93
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=55.95 E-value=4.2 Score=34.34 Aligned_cols=29 Identities=21% Similarity=0.420 Sum_probs=24.6
Q ss_pred EEEEEecCccccceeccCchhHHHHHhhh
Q 025112 51 LFRIIVPSRQIGKVIGKEGHRIQKIREET 79 (257)
Q Consensus 51 ~~rilVP~~~vg~IIGk~G~~Ik~I~~~t 79 (257)
.+++.|....-|.|||++|..|++|+++.
T Consensus 45 ~i~I~I~t~rPg~VIGkkG~~I~~L~~~l 73 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGENGRRINELTLLV 73 (240)
T ss_dssp CEEEEEEESCHHHHHTTTTCTHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 46778888899999999999999887663
No 94
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=55.30 E-value=4.1 Score=33.72 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=23.4
Q ss_pred EEEEEecCccccceeccCchhHHHHHhh
Q 025112 51 LFRIIVPSRQIGKVIGKEGHRIQKIREE 78 (257)
Q Consensus 51 ~~rilVP~~~vg~IIGk~G~~Ik~I~~~ 78 (257)
.+++.|....-|.|||++|+.|++|+++
T Consensus 41 ~~~I~I~t~rPg~vIG~~G~~I~~L~~~ 68 (210)
T 3j20_C 41 GTKVIIFAANPGYVIGRGGRRIRELTRI 68 (210)
T ss_dssp CCEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 3567778888999999999999988664
No 95
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=54.27 E-value=5.4 Score=33.76 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=25.5
Q ss_pred eEEEEEecCccccceeccCchhHHHHHhhh
Q 025112 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREET 79 (257)
Q Consensus 50 ~~~rilVP~~~vg~IIGk~G~~Ik~I~~~t 79 (257)
..+++.|....-|.|||++|..|++|+++.
T Consensus 47 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~L 76 (243)
T 2xzm_C 47 TKTEIRIKATKPQQVIGVEGKKHKELTQFL 76 (243)
T ss_dssp SCEEEEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred CeEEEEEEcCCCceEECCCchHHHHHHHHH
Confidence 356788888999999999999999987763
No 96
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=53.53 E-value=35 Score=28.34 Aligned_cols=63 Identities=13% Similarity=0.105 Sum_probs=45.8
Q ss_pred EEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEc-CHHHHHHHHHHHHHHHhcC
Q 025112 145 IRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISG-DVPAVLNALVEIGNQLREN 220 (257)
Q Consensus 145 ~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G-~~~~v~~A~~~I~~~l~e~ 220 (257)
.-+.++...+.+++|++|..+..|.+.+++.|-+- .+..|-|.+ ++.....+...|..+=.++
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG-------------~NG~IWi~~~~~~~~~~~~~ai~~~e~~~ 213 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVA-------------RNGRIHLECPNEDLEAIAVMAIKIIDEEA 213 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEE-------------TTTEEEEECSCHHHHHHHHHHHHHHHHCS
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEe-------------CCCEEEEecCCHHHHHHHHHHHHHHHhhh
Confidence 45678888999999999999999998999999883 234566886 4555555555555443443
No 97
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=52.60 E-value=19 Score=26.44 Aligned_cols=57 Identities=16% Similarity=0.384 Sum_probs=34.6
Q ss_pred ccCchhHHHHHhhhCceEEEccc---cc--------------CCCccEEEeccCCCCchhhHHHHHHHHHHHHHhc
Q 025112 66 GKEGHRIQKIREETKATIKIADA---IA--------------RHEERVIIISSKDNDNVVSDAENALQQIAALILK 124 (257)
Q Consensus 66 Gk~G~~Ik~I~~~tg~~I~i~~~---~~--------------~~~ervv~I~G~~~~~~~~~~~~A~~~I~~~i~~ 124 (257)
|+||.++++. +|.+++.++-. .| -+.+.+++|+....-....+-.+|++.+.++|.+
T Consensus 24 GpGGQnVNKv--~SaV~L~~d~~~s~lP~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~Nr~~Al~rL~~~l~~ 97 (108)
T 2jva_A 24 GAGGQNVNKV--SSAMHLRFDINASSLPPFYKERLLALNDSRITSDGVIVLKAQQYRTQEQNRADALLRLSELIVN 97 (108)
T ss_dssp TCSSSSSCCC--CCCEEEEEETTTSCCCHHHHHHHHTCSCTTBCTTCEEEEEECCSSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCC--cceEEEEEEcccccCCHHHHHHHHHHhccccccCCcEEEEECCcCCHHHHHHHHHHHHHHHHHH
Confidence 8888888764 45566665311 11 0124567777766543344667888888888765
No 98
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=51.58 E-value=4.3 Score=34.00 Aligned_cols=30 Identities=23% Similarity=0.491 Sum_probs=25.4
Q ss_pred eEEEEEecCccccceeccCchhHHHHHhhh
Q 025112 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREET 79 (257)
Q Consensus 50 ~~~rilVP~~~vg~IIGk~G~~Ik~I~~~t 79 (257)
..+++.|....-|.|||++|+.|++|+++.
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~l 73 (227)
T 3iz6_B 44 MRTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (227)
T ss_dssp TEECCEEECTTHHHHHCSSSSHHHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 357788889999999999999999887653
No 99
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=49.51 E-value=7.9 Score=33.34 Aligned_cols=38 Identities=24% Similarity=0.338 Sum_probs=27.9
Q ss_pred CeEEEEEecCc-cccceeccCchhHHHHHhh--------hCceEEEc
Q 025112 49 DVLFRIIVPSR-QIGKVIGKEGHRIQKIREE--------TKATIKIA 86 (257)
Q Consensus 49 ~~~~rilVP~~-~vg~IIGk~G~~Ik~I~~~--------tg~~I~i~ 86 (257)
.+...++|..+ +.+.||||+|+.||+|..+ +|++|.+.
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~ 285 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLE 285 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 36667777765 5788999999999988544 56666554
No 100
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=47.96 E-value=8.8 Score=33.03 Aligned_cols=36 Identities=14% Similarity=0.268 Sum_probs=26.9
Q ss_pred eEEEEEeecC-ccceeecCCChhHHHHH--------HHhCCeEEE
Q 025112 143 NTIRLLIAGS-QAGCLIGMSGQNIEKLR--------NSSGATIVI 178 (257)
Q Consensus 143 ~~~~l~Vp~~-~vG~iIGk~G~~Ik~I~--------~~tga~I~i 178 (257)
+...++|..+ +.+.|||++|+.||+|. +.+|++|.+
T Consensus 240 i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 240 IKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 4555666655 66999999999998874 557777765
No 101
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=47.71 E-value=9.3 Score=31.93 Aligned_cols=28 Identities=18% Similarity=0.426 Sum_probs=23.9
Q ss_pred eEEEEEeecCccceeecCCChhHHHHHH
Q 025112 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRN 170 (257)
Q Consensus 143 ~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~ 170 (257)
...++.|....-|.|||++|+.|++|+.
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~ 71 (227)
T 3iz6_B 44 MRTEIIIRATRTQNVLGEKGRRIRELTS 71 (227)
T ss_dssp TEECCEEECTTHHHHHCSSSSHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchhHHHHHH
Confidence 3578888889999999999999988763
No 102
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=47.39 E-value=7.9 Score=32.63 Aligned_cols=27 Identities=19% Similarity=0.411 Sum_probs=23.3
Q ss_pred EEEEEeecCccceeecCCChhHHHHHH
Q 025112 144 TIRLLIAGSQAGCLIGMSGQNIEKLRN 170 (257)
Q Consensus 144 ~~~l~Vp~~~vG~iIGk~G~~Ik~I~~ 170 (257)
..++.|....-|.|||++|+.|++|+.
T Consensus 45 ~i~I~I~t~rPg~VIGkkG~~I~~L~~ 71 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGENGRRINELTL 71 (240)
T ss_dssp CEEEEEEESCHHHHHTTTTCTHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHH
Confidence 577888888899999999999988763
No 103
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=47.36 E-value=4.4 Score=33.46 Aligned_cols=27 Identities=33% Similarity=0.672 Sum_probs=22.3
Q ss_pred EEEEecCccccceeccCchhHHHHHhh
Q 025112 52 FRIIVPSRQIGKVIGKEGHRIQKIREE 78 (257)
Q Consensus 52 ~rilVP~~~vg~IIGk~G~~Ik~I~~~ 78 (257)
+++.|....-|.|||++|+.|++|+++
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~ 89 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKV 89 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHH
Confidence 466677788899999999999888664
No 104
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=46.72 E-value=7.9 Score=31.97 Aligned_cols=36 Identities=25% Similarity=0.486 Sum_probs=27.7
Q ss_pred EEEEEeecCccceeecCCChhHHHHH----HHhC---CeEEEe
Q 025112 144 TIRLLIAGSQAGCLIGMSGQNIEKLR----NSSG---ATIVIL 179 (257)
Q Consensus 144 ~~~l~Vp~~~vG~iIGk~G~~Ik~I~----~~tg---a~I~i~ 179 (257)
..++.|....-|.|||++|+.|++|+ +.+| .+|.+.
T Consensus 41 ~~~I~I~t~rPg~vIG~~G~~I~~L~~~l~k~~~~~~v~I~i~ 83 (210)
T 3j20_C 41 GTKVIIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEVE 83 (210)
T ss_dssp CCEEEEEESCHHHHHCSSSHHHHHHHHHHHHHSSCSSCEEEEE
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCCCceEEEEE
Confidence 46777888888999999999998875 4565 556653
No 105
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=46.62 E-value=9.8 Score=32.14 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=24.3
Q ss_pred eEEEEEeecCccceeecCCChhHHHHHH
Q 025112 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRN 170 (257)
Q Consensus 143 ~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~ 170 (257)
...++.|....-|.|||++|+.|++|+.
T Consensus 47 ~~i~I~I~tarPg~vIGkkG~~I~~L~~ 74 (243)
T 2xzm_C 47 TKTEIRIKATKPQQVIGVEGKKHKELTQ 74 (243)
T ss_dssp SCEEEEEEESCHHHHHCSSSHHHHHHHH
T ss_pred CeEEEEEEcCCCceEECCCchHHHHHHH
Confidence 3578888888999999999999998864
No 106
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=46.18 E-value=5 Score=33.94 Aligned_cols=30 Identities=23% Similarity=0.455 Sum_probs=25.6
Q ss_pred eEEEEEecCccccceeccCchhHHHHHhhh
Q 025112 50 VLFRIIVPSRQIGKVIGKEGHRIQKIREET 79 (257)
Q Consensus 50 ~~~rilVP~~~vg~IIGk~G~~Ik~I~~~t 79 (257)
..+++.|....-|.|||++|..|++|+++.
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~L 73 (243)
T 2zkq_c 44 TRTEIIILATRTQNVLGEKGRRIRELTAVV 73 (243)
T ss_dssp TEECCEEEESCHHHHHCGGGHHHHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchHHHHHHHHH
Confidence 457778888999999999999999988764
No 107
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=44.85 E-value=1.2e+02 Score=24.17 Aligned_cols=108 Identities=16% Similarity=0.133 Sum_probs=60.3
Q ss_pred cEEEeccCCCCchhhHHHHHHHHHHHHHhcCCCCCchhhhhccCCCcceEEEEEeecCccceeecCCChhHHHHHHHhCC
Q 025112 95 RVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGA 174 (257)
Q Consensus 95 rvv~I~G~~~~~~~~~~~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga 174 (257)
..++++|... ..++..|++.+.+.+.+....... .....+=+|.+..+++ .-++..|....+.
T Consensus 59 GKiv~TGaks---~e~~~~a~~~i~~~L~~lg~~~~~---------~~~~i~NIvas~dl~~-----~I~Le~la~~~~~ 121 (180)
T 1ytb_A 59 GKMVVTGAKS---EDDSKLASRKYARIIQKIGFAAKF---------TDFKIQNIVGSCDVKF-----PIRLEGLAFSHGT 121 (180)
T ss_dssp SEEEEEEESS---HHHHHHHHHHHHHHHHHHTCCCCC---------EEEEEEEEEEEEECSS-----CBCHHHHHHHTTT
T ss_pred CeEEEEecCC---HHHHHHHHHHHHHHHHHcCCCccc---------ccceEEEEEEEEECCC-----ccCHHHHHHhccc
Confidence 3477888543 347888888888888765432110 0122222333322222 3456777666555
Q ss_pred eEEEeCCCCCCcccCCC---------CCceEEEEEcC--HHHHHHHHHHHHHHHhcC
Q 025112 175 TIVILAPNQLPLCASAH---------ESDRVVQISGD--VPAVLNALVEIGNQLREN 220 (257)
Q Consensus 175 ~I~i~~~~~~p~~~~~~---------~~~r~V~I~G~--~~~v~~A~~~I~~~l~e~ 220 (257)
... +.++..|...... -....|.|+|. .+.+++|++.|..+|.+.
T Consensus 122 ~~~-YEPE~fPGliyR~~~pkv~~lIF~SGkivitGak~~~~~~~a~~~i~p~L~~~ 177 (180)
T 1ytb_A 122 FSS-YEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEF 177 (180)
T ss_dssp TEE-CCTTTCSSEEEECSSSCCEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred ceE-ECCccCCcEEEEeCCCcEEEEEecCCeEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 444 2333333322110 12245778885 689999999999998764
No 108
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=44.24 E-value=5.1 Score=33.68 Aligned_cols=28 Identities=32% Similarity=0.623 Sum_probs=22.9
Q ss_pred EEEEEecCccccceeccCchhHHHHHhh
Q 025112 51 LFRIIVPSRQIGKVIGKEGHRIQKIREE 78 (257)
Q Consensus 51 ~~rilVP~~~vg~IIGk~G~~Ik~I~~~ 78 (257)
.+++.|....-|.|||++|+.|++|+++
T Consensus 63 ~i~I~I~t~rPg~vIGkkG~~I~~L~~~ 90 (233)
T 3i1m_C 63 SIRVTIHTARPGIVIGKKGEDVEKLRKV 90 (233)
T ss_dssp CBCCEEEESCHHHHHCSTTHHHHHHHHH
T ss_pred eEEEEEEECCCCccccCcchHHHHHHHH
Confidence 3566677788899999999999888764
No 109
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=44.21 E-value=7.1 Score=32.62 Aligned_cols=67 Identities=13% Similarity=0.183 Sum_probs=41.8
Q ss_pred EEEEEeecCccceeecCCChhHHHHHHHhCCeEEEeCCCCCCcccCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 025112 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLRE 219 (257)
Q Consensus 144 ~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~e 219 (257)
.+.+.+.....|.|||+.|.+++.||--+...++-... . ...-.+-|-|--+.-++.+..+...+.+
T Consensus 93 ~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn~~~~-~--------~~rv~LDi~~YR~rR~e~L~~lA~~~A~ 159 (225)
T 3gku_A 93 EMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVNKSSS-D--------YIRVKLDTENYRERRKETLETLAKNIAY 159 (225)
T ss_dssp EEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHHHTCS-S--------CCEEEEESTTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCccceeecCCCeEhHHHHHHHHHHHHhcCC-C--------ceEEEEecchHHHHHHHHHHHHHHHHHH
Confidence 46677778889999999999999999877655542110 0 1123444555555555555444444443
No 110
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=43.20 E-value=7.8 Score=32.69 Aligned_cols=27 Identities=41% Similarity=0.650 Sum_probs=22.3
Q ss_pred EEEEecCccccceeccCchhHHHHHhh
Q 025112 52 FRIIVPSRQIGKVIGKEGHRIQKIREE 78 (257)
Q Consensus 52 ~rilVP~~~vg~IIGk~G~~Ik~I~~~ 78 (257)
+++.|-...-|.|||++|+.|++|+++
T Consensus 64 i~I~I~tarPg~vIGkkG~~I~~L~~~ 90 (239)
T 2vqe_C 64 VAVTVHVAKPGVVIGRGGERIRVLREE 90 (239)
T ss_dssp BCCEEEESCGGGTSCSSSSHHHHHHHH
T ss_pred EEEEEEeCCCcceecCCchHHHHHHHH
Confidence 455666778899999999999988765
No 111
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=42.11 E-value=6.8 Score=32.57 Aligned_cols=28 Identities=7% Similarity=0.176 Sum_probs=22.6
Q ss_pred EEEEecCccccceeccCchhHHHHHhhh
Q 025112 52 FRIIVPSRQIGKVIGKEGHRIQKIREET 79 (257)
Q Consensus 52 ~rilVP~~~vg~IIGk~G~~Ik~I~~~t 79 (257)
+++.|....-|.|||++|..|++|+++-
T Consensus 72 i~I~I~~~rPg~vIGk~g~~i~~L~~~l 99 (218)
T 3bbn_C 72 IQVIIHMGFPKLLIENRPQGVEDLKINV 99 (218)
T ss_dssp BCCEEEESCTTTTSCSSSCTTHHHHHHH
T ss_pred EEEEEEecCCCcEecCCcHHHHHHHHHH
Confidence 4556677788999999999999987654
No 112
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=38.92 E-value=1.3e+02 Score=25.13 Aligned_cols=108 Identities=16% Similarity=0.119 Sum_probs=57.7
Q ss_pred cEEEeccCCCCchhhHHHHHHHHHHHHHhcCCCCCchhhhhccCCCcceEEEEEeecCccceeecCCChhHHHHHHHhCC
Q 025112 95 RVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGA 174 (257)
Q Consensus 95 rvv~I~G~~~~~~~~~~~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga 174 (257)
..++++|... ..++..|++.|..++.+........ ....+=+|-...+++ .-++..|....+-
T Consensus 119 GKiV~TGaks---~e~a~~A~~~i~~~L~~lg~~~~~~---------~f~IqNIVas~dl~f-----~I~Le~la~~~~~ 181 (240)
T 1rm1_A 119 GKMVVTGAKS---EDDSKLASRKYARIIQKIGFAAKFT---------DFKIQNIVGSCDVKF-----PIRLEGLAFSHGT 181 (240)
T ss_dssp SEEEEEEESS---HHHHHHHHHHHHHHHHHHTCCCCCE---------EEEEEEEEEEEECSS-----CBCHHHHHHHTTT
T ss_pred CeEEEEecCC---HHHHHHHHHHHHHHHHHcCCCcccC---------cceEEEEEEEEeCCC-----ccCHHHHHHhchh
Confidence 3477888543 3478889888888887654321100 112222222222222 2356666655443
Q ss_pred eEEEeCCCCCCcccCC---------CCCceEEEEEcC--HHHHHHHHHHHHHHHhcC
Q 025112 175 TIVILAPNQLPLCASA---------HESDRVVQISGD--VPAVLNALVEIGNQLREN 220 (257)
Q Consensus 175 ~I~i~~~~~~p~~~~~---------~~~~r~V~I~G~--~~~v~~A~~~I~~~l~e~ 220 (257)
.+.-. ++..|..... --....|+|+|. .+.+++|++.|..+|.+.
T Consensus 182 ~~~YE-PE~fPGLiyR~~~pkvvllIF~SGKIviTGaK~~~~~~~Ai~~i~p~L~~~ 237 (240)
T 1rm1_A 182 FSSYE-PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEF 237 (240)
T ss_dssp TEEEE-TTTEEEEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred ccEEC-CccCCceEEEeCCCcEEEEEecCCEEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 33321 2222221100 012345778885 689999999999998764
No 113
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=38.73 E-value=8.4 Score=31.73 Aligned_cols=35 Identities=37% Similarity=0.680 Sum_probs=26.8
Q ss_pred EEEEEeecCccceeecCCChhHHHHH----HHhCCeEEE
Q 025112 144 TIRLLIAGSQAGCLIGMSGQNIEKLR----NSSGATIVI 178 (257)
Q Consensus 144 ~~~l~Vp~~~vG~iIGk~G~~Ik~I~----~~tga~I~i 178 (257)
..++.|....-|.|||++|+.|++|+ +.++.++++
T Consensus 62 ~i~I~I~~~rpg~viGk~G~~i~~L~~~l~k~~~~~v~I 100 (206)
T 3r8n_C 62 SIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQI 100 (206)
T ss_dssp SBCCEEEESCHHHHHCSSSHHHHHHHHHHHHHHSSCBCC
T ss_pred eEEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceEE
Confidence 35667777788999999999998876 456766554
No 114
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=38.34 E-value=42 Score=25.72 Aligned_cols=58 Identities=21% Similarity=0.357 Sum_probs=35.3
Q ss_pred ccCchhHHHHHhhhCceEEEccc---ccC--------------CCccEEEeccCCCCchhhHHHHHHHHHHHHHhcC
Q 025112 66 GKEGHRIQKIREETKATIKIADA---IAR--------------HEERVIIISSKDNDNVVSDAENALQQIAALILKD 125 (257)
Q Consensus 66 Gk~G~~Ik~I~~~tg~~I~i~~~---~~~--------------~~ervv~I~G~~~~~~~~~~~~A~~~I~~~i~~~ 125 (257)
|+||.++++. +|.|.+.++-. .|. +.+..++|+....-....+-.+|+..+.++|.+.
T Consensus 24 GpGGQnVNKv--~SaV~L~~~~~~s~lp~~~k~rL~~~~~~rit~~G~ivv~~q~~RSQ~~Nr~~A~~rL~~~l~~a 98 (140)
T 4dh9_Y 24 GAGGQHVNKT--STAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQELNREAALARLVAMIKEL 98 (140)
T ss_dssp SSSSHHHHTT--CCCEEEEECCSSSSSCSHHHHHHHSCCCTTSCSSCCCCEEECCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccccc--cceEEEEEecccccCCHHHHHHHHHHhccccccCCcEEEEEcCCcCHHHHHHHHHHHHHHHHHHh
Confidence 9999999854 67777776411 111 1123466666554333446678888888888654
No 115
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=36.30 E-value=10 Score=32.01 Aligned_cols=29 Identities=17% Similarity=0.410 Sum_probs=24.5
Q ss_pred eEEEEEeecCccceeecCCChhHHHHHHH
Q 025112 143 NTIRLLIAGSQAGCLIGMSGQNIEKLRNS 171 (257)
Q Consensus 143 ~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~ 171 (257)
...++.|....-|.|||++|..|++|+..
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (243)
T 2zkq_c 44 TRTEIIILATRTQNVLGEKGRRIRELTAV 72 (243)
T ss_dssp TEECCEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchHHHHHHHH
Confidence 35778888888999999999999988753
No 116
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=35.96 E-value=9.6 Score=31.98 Aligned_cols=34 Identities=35% Similarity=0.661 Sum_probs=25.6
Q ss_pred EEEEEeecCccceeecCCChhHHHHH----HHhCCeEE
Q 025112 144 TIRLLIAGSQAGCLIGMSGQNIEKLR----NSSGATIV 177 (257)
Q Consensus 144 ~~~l~Vp~~~vG~iIGk~G~~Ik~I~----~~tga~I~ 177 (257)
..++.|....-|.|||++|+.|++|+ +.++.+++
T Consensus 63 ~i~I~I~t~rPg~vIGkkG~~I~~L~~~L~k~~~~~v~ 100 (233)
T 3i1m_C 63 SIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQ 100 (233)
T ss_dssp CBCCEEEESCHHHHHCSTTHHHHHHHHHHHHHHTSCBC
T ss_pred eEEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceE
Confidence 45677777888999999999998876 45665433
No 117
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=34.68 E-value=14 Score=31.10 Aligned_cols=28 Identities=25% Similarity=0.527 Sum_probs=22.1
Q ss_pred EEEEEeecCccceeecCCChhHHHHHHH
Q 025112 144 TIRLLIAGSQAGCLIGMSGQNIEKLRNS 171 (257)
Q Consensus 144 ~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~ 171 (257)
..++.|....-|.|||++|+.|++|+..
T Consensus 63 ~i~I~I~tarPg~vIGkkG~~I~~L~~~ 90 (239)
T 2vqe_C 63 NVAVTVHVAKPGVVIGRGGERIRVLREE 90 (239)
T ss_dssp CBCCEEEESCGGGTSCSSSSHHHHHHHH
T ss_pred eEEEEEEeCCCcceecCCchHHHHHHHH
Confidence 3556667778899999999999888643
No 118
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=33.63 E-value=26 Score=25.83 Aligned_cols=31 Identities=16% Similarity=0.317 Sum_probs=21.2
Q ss_pred ccEEEeccCCCCchhhHHHHHHHHHHHHHhc
Q 025112 94 ERVIIISSKDNDNVVSDAENALQQIAALILK 124 (257)
Q Consensus 94 ervv~I~G~~~~~~~~~~~~A~~~I~~~i~~ 124 (257)
+.+++|+....-....+-++|++.+.++|.+
T Consensus 75 ~G~ivv~~q~~RSQ~~Nr~~Al~rL~~~l~~ 105 (112)
T 1j26_A 75 AGELVLTSESSRYQFRNLAECLQKIRDMIAE 105 (112)
T ss_dssp SSEEEEEECCCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCccCHHHHHHHHHHHHHHHHHH
Confidence 4457777766544445667888888888765
No 119
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=33.24 E-value=8.6 Score=33.09 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=24.3
Q ss_pred EEEee-cCccceeecCCChhHHHHH--------HHhCCeEEE
Q 025112 146 RLLIA-GSQAGCLIGMSGQNIEKLR--------NSSGATIVI 178 (257)
Q Consensus 146 ~l~Vp-~~~vG~iIGk~G~~Ik~I~--------~~tga~I~i 178 (257)
.+.|. .++.+.|||++|+.||+|. +..|++|.+
T Consensus 233 ~i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~l 274 (301)
T 1wf3_A 233 ILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYL 274 (301)
T ss_dssp EEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred EEEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHCCceEE
Confidence 34444 4567999999999998774 567777765
No 120
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=33.19 E-value=66 Score=22.93 Aligned_cols=51 Identities=6% Similarity=-0.014 Sum_probs=35.8
Q ss_pred ChhHHHHHHHhCCeEEEeCCCC--CCcccCCCCCceEEEEEcCHHHHHHHHHHHHH
Q 025112 162 GQNIEKLRNSSGATIVILAPNQ--LPLCASAHESDRVVQISGDVPAVLNALVEIGN 215 (257)
Q Consensus 162 G~~Ik~I~~~tga~I~i~~~~~--~p~~~~~~~~~r~V~I~G~~~~v~~A~~~I~~ 215 (257)
..-|.++.+++|+.++|....- +... .-+.=++.+.|+.+++++|+..+.+
T Consensus 35 ~PiIs~l~~~~~v~vnIL~g~I~~i~~~---~~G~L~v~l~G~~~~~~~ai~~L~~ 87 (106)
T 3dhx_A 35 APLLSETARRFNVNNNIISAQMDYAGGV---KFGIMLTEMHGTQQDTQAAIAWLQE 87 (106)
T ss_dssp CCHHHHHHHHSCCEEEEEEEEEEEETTE---EEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHCCCEEEEEEEeEEECCe---eEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 4579999999999999875321 1000 0133578999999999988777654
No 121
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=33.07 E-value=8.9 Score=33.02 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=23.7
Q ss_pred EEEecC-ccccceeccCchhHHHHHhh--------hCceEEEc
Q 025112 53 RIIVPS-RQIGKVIGKEGHRIQKIREE--------TKATIKIA 86 (257)
Q Consensus 53 rilVP~-~~vg~IIGk~G~~Ik~I~~~--------tg~~I~i~ 86 (257)
.+.|.. ++.+.||||+|+.||+|..+ ++++|.+.
T Consensus 233 ~i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~l~ 275 (301)
T 1wf3_A 233 ILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYLD 275 (301)
T ss_dssp EEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred EEEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHCCceEEE
Confidence 444543 45788999999999987544 56666554
No 122
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=32.98 E-value=27 Score=27.65 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=28.4
Q ss_pred eEEEEEecCccccceeccCchhHHHH-Hhhh--------Cc---eEEEcc
Q 025112 50 VLFRIIVPSRQIGKVIGKEGHRIQKI-REET--------KA---TIKIAD 87 (257)
Q Consensus 50 ~~~rilVP~~~vg~IIGk~G~~Ik~I-~~~t--------g~---~I~i~~ 87 (257)
+...+.||.+..|.+|| .+|+++ ++++ |+ .+++.+
T Consensus 7 l~~~i~I~P~~~~~~i~---~~I~~~L~~~~~gk~~~~~G~~i~~idi~~ 53 (187)
T 1go3_E 7 IADVVKVPPEEFGKDLK---ETVKKILMEKYEGRLDKDVGFVLSIVDVKD 53 (187)
T ss_dssp EEEEEEECGGGTTSCHH---HHHHHHHHHHHTTCEETTTEEEEEEEEEEE
T ss_pred EEEEEEECHHHhCccHH---HHHHHHHHHHhCCeEcCCccEEEEEEEEee
Confidence 45678899999999999 699995 9999 87 455554
No 123
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=30.94 E-value=13 Score=30.91 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=21.6
Q ss_pred EEEEEeecCccceeecCCChhHHHHHH
Q 025112 144 TIRLLIAGSQAGCLIGMSGQNIEKLRN 170 (257)
Q Consensus 144 ~~~l~Vp~~~vG~iIGk~G~~Ik~I~~ 170 (257)
..++.|....-|.|||++|+.|++|++
T Consensus 71 ~i~I~I~~~rPg~vIGk~g~~i~~L~~ 97 (218)
T 3bbn_C 71 LIQVIIHMGFPKLLIENRPQGVEDLKI 97 (218)
T ss_dssp CBCCEEEESCTTTTSCSSSCTTHHHHH
T ss_pred eEEEEEEecCCCcEecCCcHHHHHHHH
Confidence 355666777789999999999988864
No 124
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=30.86 E-value=2.2e+02 Score=23.33 Aligned_cols=108 Identities=15% Similarity=0.125 Sum_probs=61.7
Q ss_pred cEEEeccCCCCchhhHHHHHHHHHHHHHhcCCCCCchhhhhccCCCcceEEEEEeecCccceeecCCChhHHHHHHHhCC
Q 025112 95 RVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGA 174 (257)
Q Consensus 95 rvv~I~G~~~~~~~~~~~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~Vp~~~vG~iIGk~G~~Ik~I~~~tga 174 (257)
..++++|... ..++..|+..+.+.+.+....... .....+-++....+++=| ++..|....+.
T Consensus 97 GKiV~TGAkS---~e~a~~A~~ki~~~L~~lG~~v~~---------~~fkIqNIvas~dl~f~I-----~Le~la~~~~~ 159 (218)
T 3eik_A 97 GKMVITGAKS---EKSSRMAAQRYAKIIHKLGFNATF---------DDFKIQNIVSSCDIKFSI-----RLEGLAYAHSN 159 (218)
T ss_dssp SEEEEEEESS---HHHHHHHHHHHHHHHHHTTCCCCC---------EEEEEEEEEEEEECSSCB-----CHHHHHHHSTT
T ss_pred CeEEEEecCC---HHHHHHHHHHHHHHHHHcCCCccc---------ccceEEEEEEEEECCCcC-----cHHHHHHhccC
Confidence 3477777654 457888999999888775432111 113344444444444333 45666554444
Q ss_pred eEEEeCCCCCCcccCC---------CCCceEEEEEcC--HHHHHHHHHHHHHHHhcC
Q 025112 175 TIVILAPNQLPLCASA---------HESDRVVQISGD--VPAVLNALVEIGNQLREN 220 (257)
Q Consensus 175 ~I~i~~~~~~p~~~~~---------~~~~r~V~I~G~--~~~v~~A~~~I~~~l~e~ 220 (257)
... +.++..|..... --....|+|+|. .+.+..|.+.|..+|.+.
T Consensus 160 ~~~-YEPE~fPGliyR~~~pkvt~lIF~SGKiviTGaks~~d~~~A~~~I~p~L~~f 215 (218)
T 3eik_A 160 YCS-YEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQH 215 (218)
T ss_dssp TEE-CCTTTSSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CcE-ECCccCceEEEEcCCCCEEEEEeCCCeEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 443 222322221100 012356788885 689999999999999874
No 125
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=21.23 E-value=84 Score=24.84 Aligned_cols=35 Identities=11% Similarity=-0.041 Sum_probs=30.9
Q ss_pred EEEEeecCccceeecCCCh-hHHHHHHHhCCeEEEe
Q 025112 145 IRLLIAGSQAGCLIGMSGQ-NIEKLRNSSGATIVIL 179 (257)
Q Consensus 145 ~~l~Vp~~~vG~iIGk~G~-~Ik~I~~~tga~I~i~ 179 (257)
.-+.|+...+.+++|+.|. .++.|.+.+++.|-+-
T Consensus 93 ~l~~v~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG 128 (175)
T 2ja9_A 93 MIIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIG 128 (175)
T ss_dssp EEEECCHHHHHHHHHCTTCCHHHHHHTTCCCEEEEE
T ss_pred EEEEEcHHHhhHHhcCCCcchHHhhhccCCeEEEEE
Confidence 5678999999999999888 8899998999999884
No 126
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=21.18 E-value=1.8e+02 Score=19.10 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=20.6
Q ss_pred CCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 025112 192 ESDRVVQISGDVPAVLNALVEIGNQLRE 219 (257)
Q Consensus 192 ~~~r~V~I~G~~~~v~~A~~~I~~~l~e 219 (257)
..+-.+.|+|-|++|.+-+..=.+.|..
T Consensus 39 gndleiritgvpeqvrkelakeaerlak 66 (85)
T 2kl8_A 39 GNDLEIRITGVPEQVRKELAKEAERLAK 66 (85)
T ss_dssp SSCEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred CCeeEEEEecChHHHHHHHHHHHHHHHH
Confidence 3567799999999998766555555543
Done!