Query 025113
Match_columns 257
No_of_seqs 146 out of 1281
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 02:48:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025113.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025113hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0031 CysK Cysteine synthase 100.0 3.1E-58 6.8E-63 395.3 28.9 246 9-256 3-262 (300)
2 PLN03013 cysteine synthase 100.0 5.5E-58 1.2E-62 414.1 30.3 252 6-257 112-375 (429)
3 PLN02565 cysteine synthase 100.0 2E-57 4.3E-62 402.1 30.3 251 7-257 5-267 (322)
4 PRK11761 cysM cysteine synthas 100.0 1.1E-56 2.4E-61 393.6 29.5 249 7-257 2-255 (296)
5 COG1171 IlvA Threonine dehydra 100.0 2.4E-57 5.3E-62 396.3 22.9 247 4-257 12-283 (347)
6 PLN00011 cysteine synthase 100.0 6.2E-56 1.3E-60 393.4 31.4 257 1-257 1-269 (323)
7 PLN02556 cysteine synthase/L-3 100.0 5.1E-56 1.1E-60 398.7 29.5 251 7-257 49-311 (368)
8 TIGR01136 cysKM cysteine synth 100.0 2.8E-55 6.1E-60 385.9 30.4 245 12-257 2-258 (299)
9 TIGR01138 cysM cysteine syntha 100.0 3.2E-55 7E-60 383.5 30.0 245 11-257 2-251 (290)
10 TIGR01139 cysK cysteine syntha 100.0 2.4E-54 5.1E-59 379.8 30.3 244 12-257 2-258 (298)
11 PRK08526 threonine dehydratase 100.0 2.8E-55 6E-60 398.5 23.7 246 3-257 6-275 (403)
12 PRK07476 eutB threonine dehydr 100.0 1.5E-54 3.2E-59 384.7 25.6 246 3-257 5-276 (322)
13 PRK10717 cysteine synthase A; 100.0 1.6E-53 3.4E-58 379.5 30.1 251 6-257 2-277 (330)
14 TIGR02991 ectoine_eutB ectoine 100.0 2.7E-54 5.9E-59 381.8 25.1 246 3-257 5-276 (317)
15 PLN02970 serine racemase 100.0 3.2E-54 6.9E-59 383.2 24.8 245 4-257 14-281 (328)
16 PRK12483 threonine dehydratase 100.0 3.7E-54 8E-59 399.8 26.2 242 8-257 28-293 (521)
17 PRK06382 threonine dehydratase 100.0 2.7E-54 5.9E-59 393.6 24.5 246 3-257 11-280 (406)
18 PRK08198 threonine dehydratase 100.0 3.5E-54 7.5E-59 393.4 24.3 246 3-257 8-277 (404)
19 PRK08638 threonine dehydratase 100.0 4.1E-54 8.8E-59 382.6 23.4 245 4-257 14-282 (333)
20 PRK06110 hypothetical protein; 100.0 8.4E-54 1.8E-58 379.9 23.5 246 3-257 7-276 (322)
21 cd01561 CBS_like CBS_like: Thi 100.0 1.4E-52 3.1E-57 367.5 30.7 241 16-257 1-255 (291)
22 PRK07048 serine/threonine dehy 100.0 2.7E-53 5.9E-58 376.6 24.6 246 3-257 10-279 (321)
23 TIGR02079 THD1 threonine dehyd 100.0 2.1E-53 4.5E-58 387.6 24.2 247 3-257 2-275 (409)
24 PLN02550 threonine dehydratase 100.0 2E-53 4.4E-58 397.1 24.7 240 10-257 102-365 (591)
25 cd06447 D-Ser-dehyd D-Serine d 100.0 2.1E-53 4.5E-58 384.2 23.9 240 15-257 50-358 (404)
26 PLN02356 phosphateglycerate ki 100.0 2E-52 4.4E-57 377.7 29.4 249 7-256 43-361 (423)
27 PRK08639 threonine dehydratase 100.0 2.5E-53 5.3E-58 388.7 23.0 249 3-257 11-286 (420)
28 PRK08813 threonine dehydratase 100.0 1.2E-52 2.7E-57 372.9 25.6 236 3-257 25-283 (349)
29 TIGR01124 ilvA_2Cterm threonin 100.0 7.2E-53 1.6E-57 391.1 24.9 242 8-257 8-273 (499)
30 PRK07334 threonine dehydratase 100.0 5.8E-53 1.3E-57 384.7 22.5 246 3-257 9-276 (403)
31 PRK06815 hypothetical protein; 100.0 1.1E-52 2.4E-57 371.9 23.6 246 3-257 6-276 (317)
32 cd06448 L-Ser-dehyd Serine deh 100.0 1.9E-52 4.1E-57 369.9 24.7 237 17-257 1-264 (316)
33 PRK02991 D-serine dehydratase; 100.0 3.2E-52 6.9E-57 380.6 25.3 240 15-257 73-381 (441)
34 TIGR01127 ilvA_1Cterm threonin 100.0 1.9E-52 4.2E-57 379.2 23.7 231 18-257 1-255 (380)
35 PRK08246 threonine dehydratase 100.0 4.1E-52 9E-57 367.0 24.6 240 3-257 9-272 (310)
36 TIGR02035 D_Ser_am_lyase D-ser 100.0 5E-52 1.1E-56 378.0 25.1 241 14-257 67-376 (431)
37 PRK09224 threonine dehydratase 100.0 4.7E-52 1E-56 387.0 25.5 242 8-257 11-276 (504)
38 PRK06608 threonine dehydratase 100.0 5E-52 1.1E-56 369.9 24.5 245 3-257 9-278 (338)
39 cd01562 Thr-dehyd Threonine de 100.0 5.2E-52 1.1E-56 365.9 24.0 247 2-257 2-272 (304)
40 TIGR01137 cysta_beta cystathio 100.0 2.3E-51 4.9E-56 380.3 28.6 249 8-257 2-270 (454)
41 KOG1250 Threonine/serine dehyd 100.0 3.8E-52 8.3E-57 361.8 20.9 245 5-257 54-322 (457)
42 PRK06352 threonine synthase; V 100.0 1.4E-51 3E-56 369.1 23.1 239 9-257 20-284 (351)
43 PRK07591 threonine synthase; V 100.0 2.6E-51 5.6E-56 375.1 25.0 240 10-257 82-357 (421)
44 PRK08197 threonine synthase; V 100.0 2.8E-51 6.2E-56 372.6 23.8 239 10-257 72-347 (394)
45 KOG1252 Cystathionine beta-syn 100.0 4.9E-52 1.1E-56 355.7 17.5 250 7-256 42-308 (362)
46 PRK06381 threonine synthase; V 100.0 1.4E-50 3E-55 359.1 25.6 236 13-257 11-287 (319)
47 KOG1251 Serine racemase [Signa 100.0 2.8E-51 6E-56 336.5 18.1 247 2-257 10-280 (323)
48 PRK07409 threonine synthase; V 100.0 2.3E-50 5E-55 362.0 25.8 239 9-257 23-288 (353)
49 PRK06450 threonine synthase; V 100.0 4E-50 8.6E-55 357.3 24.3 225 10-257 51-308 (338)
50 PRK06260 threonine synthase; V 100.0 3.7E-50 8.1E-55 365.6 24.6 238 10-257 60-334 (397)
51 cd01563 Thr-synth_1 Threonine 100.0 5.3E-50 1.2E-54 356.1 24.1 239 9-257 14-288 (324)
52 PRK06721 threonine synthase; R 100.0 1.3E-49 2.9E-54 356.6 26.8 240 8-257 19-284 (352)
53 PLN02569 threonine synthase 100.0 5.2E-49 1.1E-53 363.2 26.3 242 10-257 126-405 (484)
54 PRK08329 threonine synthase; V 100.0 4.9E-49 1.1E-53 352.3 25.4 229 11-257 58-310 (347)
55 PRK08206 diaminopropionate amm 100.0 3.6E-49 7.9E-54 358.5 23.5 250 4-256 29-340 (399)
56 PRK05638 threonine synthase; V 100.0 5.6E-49 1.2E-53 362.3 24.4 235 10-257 59-322 (442)
57 cd00640 Trp-synth-beta_II Tryp 100.0 5.9E-48 1.3E-52 330.1 28.0 213 18-257 1-214 (244)
58 TIGR01747 diampropi_NH3ly diam 100.0 6.9E-47 1.5E-51 340.5 24.4 247 5-256 11-321 (376)
59 TIGR00260 thrC threonine synth 100.0 9.7E-47 2.1E-51 335.7 21.4 239 9-257 15-290 (328)
60 TIGR03528 2_3_DAP_am_ly diamin 100.0 6.8E-46 1.5E-50 336.2 23.6 246 7-256 32-340 (396)
61 PRK13028 tryptophan synthase s 100.0 1.5E-44 3.2E-49 326.4 27.5 242 11-257 55-355 (402)
62 TIGR00263 trpB tryptophan synt 100.0 9E-45 1.9E-49 328.5 26.0 241 11-256 43-342 (385)
63 PRK03910 D-cysteine desulfhydr 100.0 2.8E-45 6E-50 326.6 22.2 247 5-257 3-285 (331)
64 PRK04346 tryptophan synthase s 100.0 2.4E-44 5.1E-49 324.6 26.9 241 11-256 51-350 (397)
65 TIGR01275 ACC_deam_rel pyridox 100.0 1.7E-44 3.8E-49 319.1 23.7 237 14-257 4-268 (311)
66 PLN02618 tryptophan synthase, 100.0 5E-44 1.1E-48 323.1 26.7 243 9-256 57-363 (410)
67 PF00291 PALP: Pyridoxal-phosp 100.0 1.2E-44 2.5E-49 318.9 21.9 237 11-257 1-273 (306)
68 TIGR03844 cysteate_syn cysteat 100.0 1.2E-44 2.6E-49 327.9 22.2 237 12-257 57-346 (398)
69 cd06446 Trp-synth_B Tryptophan 100.0 5.1E-44 1.1E-48 322.0 25.8 242 10-257 26-327 (365)
70 TIGR01415 trpB_rel pyridoxal-p 100.0 9.6E-44 2.1E-48 323.5 27.4 240 9-257 60-371 (419)
71 PRK12390 1-aminocyclopropane-1 100.0 2.7E-44 5.9E-49 320.9 22.9 248 5-257 3-291 (337)
72 cd06449 ACCD Aminocyclopropane 100.0 9.4E-44 2E-48 313.8 22.2 234 18-257 1-274 (307)
73 TIGR01274 ACC_deam 1-aminocycl 100.0 1.6E-43 3.5E-48 315.9 23.4 247 5-257 2-290 (337)
74 PRK12391 tryptophan synthase s 100.0 8E-43 1.7E-47 317.9 27.7 241 11-257 71-380 (427)
75 KOG1481 Cysteine synthase [Ami 100.0 7E-44 1.5E-48 297.8 17.8 246 10-256 42-327 (391)
76 PRK13802 bifunctional indole-3 100.0 2.8E-42 6E-47 327.5 28.8 241 11-256 319-626 (695)
77 PRK14045 1-aminocyclopropane-1 100.0 3.2E-42 6.8E-47 306.5 20.9 246 5-257 9-283 (329)
78 PRK13803 bifunctional phosphor 100.0 5.8E-41 1.3E-45 318.5 25.3 240 12-256 265-562 (610)
79 COG0498 ThrC Threonine synthas 100.0 4.3E-39 9.4E-44 289.5 20.5 239 10-257 69-340 (411)
80 COG0133 TrpB Tryptophan syntha 100.0 5.4E-30 1.2E-34 218.2 19.4 239 12-255 50-346 (396)
81 PRK09225 threonine synthase; V 100.0 1E-29 2.3E-34 233.4 22.1 226 17-257 88-383 (462)
82 COG2515 Acd 1-aminocyclopropan 100.0 2.5E-28 5.4E-33 207.4 18.7 248 4-257 2-279 (323)
83 cd01560 Thr-synth_2 Threonine 100.0 7.8E-28 1.7E-32 221.1 23.4 226 17-257 87-386 (460)
84 COG1350 Predicted alternative 99.9 1.3E-25 2.9E-30 191.9 16.6 234 16-255 77-379 (432)
85 KOG1395 Tryptophan synthase be 99.9 5.4E-25 1.2E-29 189.6 15.4 237 14-255 119-414 (477)
86 COG3048 DsdA D-serine dehydrat 99.9 1.3E-24 2.9E-29 184.2 14.8 242 12-256 73-383 (443)
87 PF03808 Glyco_tran_WecB: Glyc 93.3 0.77 1.7E-05 37.0 8.9 119 81-207 13-133 (172)
88 cd06533 Glyco_transf_WecG_TagA 90.6 3.5 7.6E-05 33.1 9.7 120 81-208 11-132 (171)
89 KOG0025 Zn2+-binding dehydroge 90.2 3.2 7E-05 36.4 9.5 88 33-123 124-217 (354)
90 PF00107 ADH_zinc_N: Zinc-bind 89.3 4.1 8.9E-05 30.4 8.8 35 174-211 58-92 (130)
91 COG0604 Qor NADPH:quinone redu 88.8 5.2 0.00011 35.6 10.4 58 62-122 137-194 (326)
92 TIGR03201 dearomat_had 6-hydro 88.6 7.1 0.00015 34.7 11.2 59 60-122 159-217 (349)
93 cd08294 leukotriene_B4_DH_like 88.2 9.1 0.0002 33.3 11.5 59 61-122 137-195 (329)
94 cd08230 glucose_DH Glucose deh 88.2 4.2 9.2E-05 36.2 9.5 54 65-119 170-223 (355)
95 PF05368 NmrA: NmrA-like famil 85.9 9 0.00019 31.8 9.7 50 72-122 2-51 (233)
96 TIGR00696 wecB_tagA_cpsF bacte 85.8 9.5 0.00021 30.9 9.3 115 82-207 14-132 (177)
97 TIGR02819 fdhA_non_GSH formald 85.8 14 0.00031 33.7 11.6 56 61-119 179-234 (393)
98 PRK03562 glutathione-regulated 85.7 21 0.00046 34.8 13.3 51 70-123 401-451 (621)
99 PRK10669 putative cation:proto 85.3 29 0.00063 33.3 14.0 131 70-251 418-549 (558)
100 COG0379 NadA Quinolinate synth 85.2 27 0.00057 31.0 12.8 165 74-251 143-319 (324)
101 TIGR01064 pyruv_kin pyruvate k 84.5 28 0.0006 32.9 13.0 123 84-212 262-407 (473)
102 TIGR02825 B4_12hDH leukotriene 84.4 16 0.00035 31.9 11.0 59 61-122 132-190 (325)
103 PF01041 DegT_DnrJ_EryC1: DegT 84.0 2.5 5.4E-05 38.1 5.8 55 70-124 41-95 (363)
104 cd08295 double_bond_reductase_ 83.4 20 0.00044 31.5 11.3 57 61-120 145-202 (338)
105 TIGR03366 HpnZ_proposed putati 82.6 12 0.00026 32.1 9.4 53 65-120 118-170 (280)
106 PRK12823 benD 1,6-dihydroxycyc 82.6 17 0.00036 30.5 10.1 73 69-141 9-82 (260)
107 cd08274 MDR9 Medium chain dehy 82.4 16 0.00035 32.1 10.3 57 60-120 170-226 (350)
108 PF00764 Arginosuc_synth: Argi 82.4 18 0.00038 33.2 10.4 126 73-206 2-138 (388)
109 TIGR00670 asp_carb_tr aspartat 82.2 10 0.00022 33.5 8.7 45 78-122 162-208 (301)
110 TIGR03451 mycoS_dep_FDH mycoth 82.2 18 0.00039 32.2 10.6 58 60-120 169-226 (358)
111 cd08293 PTGR2 Prostaglandin re 81.7 28 0.0006 30.6 11.5 60 61-123 146-209 (345)
112 PLN03154 putative allyl alcoho 81.6 27 0.00058 31.2 11.4 59 61-122 152-211 (348)
113 KOG1201 Hydroxysteroid 17-beta 81.3 25 0.00054 31.0 10.5 74 68-142 38-113 (300)
114 PF02826 2-Hacid_dh_C: D-isome 81.3 17 0.00036 29.2 9.1 121 70-215 37-159 (178)
115 cd08281 liver_ADH_like1 Zinc-d 81.3 21 0.00046 32.0 10.8 59 61-122 185-243 (371)
116 cd08256 Zn_ADH2 Alcohol dehydr 81.1 29 0.00062 30.7 11.4 59 61-122 168-226 (350)
117 PRK09424 pntA NAD(P) transhydr 80.4 32 0.0007 32.8 11.8 50 70-122 166-215 (509)
118 COG2130 Putative NADP-dependen 79.7 20 0.00042 31.9 9.3 60 60-122 143-203 (340)
119 PRK12743 oxidoreductase; Provi 79.0 19 0.00042 30.2 9.2 72 70-141 4-78 (256)
120 TIGR02822 adh_fam_2 zinc-bindi 79.0 12 0.00027 33.0 8.3 57 60-120 158-214 (329)
121 cd01075 NAD_bind_Leu_Phe_Val_D 78.6 28 0.00061 28.6 9.8 68 49-119 6-76 (200)
122 PRK09880 L-idonate 5-dehydroge 78.3 25 0.00054 31.1 10.1 60 60-122 162-221 (343)
123 PF13561 adh_short_C2: Enoyl-( 78.3 18 0.00039 30.1 8.8 65 76-141 4-70 (241)
124 cd08233 butanediol_DH_like (2R 77.8 39 0.00085 29.8 11.3 59 61-122 166-224 (351)
125 PF01210 NAD_Gly3P_dh_N: NAD-d 77.5 5 0.00011 31.6 4.8 41 72-115 2-42 (157)
126 PRK03659 glutathione-regulated 77.5 50 0.0011 32.1 12.5 96 70-207 401-497 (601)
127 COG0399 WecE Predicted pyridox 77.4 58 0.0012 29.8 14.7 70 48-124 35-104 (374)
128 cd08292 ETR_like_2 2-enoyl thi 77.0 31 0.00068 29.7 10.3 57 61-120 133-189 (324)
129 cd08296 CAD_like Cinnamyl alco 76.8 35 0.00075 29.9 10.6 53 64-120 160-212 (333)
130 COG0800 Eda 2-keto-3-deoxy-6-p 76.6 44 0.00094 27.9 10.8 92 52-155 27-118 (211)
131 cd08297 CAD3 Cinnamyl alcohol 76.6 34 0.00074 30.0 10.5 54 64-120 162-215 (341)
132 PRK06935 2-deoxy-D-gluconate 3 76.4 36 0.00079 28.5 10.2 73 69-141 16-89 (258)
133 PRK05993 short chain dehydroge 75.9 49 0.0011 28.2 11.0 67 69-139 5-71 (277)
134 PLN02740 Alcohol dehydrogenase 75.4 38 0.00081 30.6 10.6 57 61-120 192-248 (381)
135 PRK07109 short chain dehydroge 75.4 20 0.00044 31.8 8.7 73 69-141 9-83 (334)
136 PRK13394 3-hydroxybutyrate deh 75.3 28 0.00061 29.0 9.3 56 69-124 8-64 (262)
137 TIGR01751 crot-CoA-red crotony 75.2 24 0.00051 32.1 9.2 57 63-122 185-241 (398)
138 PRK07478 short chain dehydroge 75.1 31 0.00067 28.8 9.4 73 69-141 7-81 (254)
139 PRK07062 short chain dehydroge 75.0 47 0.001 27.9 10.6 33 69-101 9-41 (265)
140 PF09837 DUF2064: Uncharacteri 74.8 34 0.00073 25.8 9.8 97 85-187 3-100 (122)
141 cd08239 THR_DH_like L-threonin 74.8 41 0.00088 29.5 10.5 60 60-122 156-215 (339)
142 PRK07454 short chain dehydroge 74.4 38 0.00082 28.0 9.7 71 70-140 8-80 (241)
143 PRK06139 short chain dehydroge 74.3 20 0.00043 31.9 8.3 71 69-139 8-80 (330)
144 PRK08628 short chain dehydroge 74.3 33 0.00072 28.6 9.4 72 69-140 8-80 (258)
145 cd08287 FDH_like_ADH3 formalde 74.3 56 0.0012 28.6 11.3 56 62-120 163-218 (345)
146 PRK10754 quinone oxidoreductas 74.3 58 0.0012 28.2 11.3 57 61-120 134-190 (327)
147 PRK12481 2-deoxy-D-gluconate 3 74.2 32 0.00069 28.8 9.3 72 69-141 9-81 (251)
148 cd08289 MDR_yhfp_like Yhfp put 74.1 30 0.00066 29.9 9.4 50 68-120 147-196 (326)
149 PRK13656 trans-2-enoyl-CoA red 74.0 74 0.0016 29.3 11.8 99 40-141 14-129 (398)
150 COG0623 FabI Enoyl-[acyl-carri 73.9 23 0.00049 30.2 7.8 25 187-211 122-147 (259)
151 PF00185 OTCace: Aspartate/orn 73.8 20 0.00043 28.4 7.3 46 77-122 12-65 (158)
152 KOG1205 Predicted dehydrogenas 73.8 34 0.00074 29.9 9.3 73 69-141 13-89 (282)
153 PRK10309 galactitol-1-phosphat 73.7 45 0.00097 29.4 10.5 58 60-120 153-210 (347)
154 PRK08589 short chain dehydroge 73.7 26 0.00056 29.8 8.7 73 69-141 7-80 (272)
155 PRK06182 short chain dehydroge 73.6 55 0.0012 27.7 11.0 69 69-141 4-72 (273)
156 PTZ00354 alcohol dehydrogenase 73.6 59 0.0013 28.0 11.4 58 62-122 135-192 (334)
157 cd08301 alcohol_DH_plants Plan 73.5 43 0.00093 29.9 10.4 58 61-121 181-238 (369)
158 PRK14030 glutamate dehydrogena 72.9 26 0.00056 32.8 8.8 52 49-100 208-259 (445)
159 PF00070 Pyr_redox: Pyridine n 72.8 27 0.00058 23.7 7.1 49 72-120 2-59 (80)
160 KOG0024 Sorbitol dehydrogenase 72.7 49 0.0011 29.7 10.0 64 57-123 159-222 (354)
161 PRK08703 short chain dehydroge 72.7 53 0.0011 27.1 10.4 33 69-101 7-39 (239)
162 cd08300 alcohol_DH_class_III c 72.5 41 0.00089 30.1 10.0 58 61-121 180-237 (368)
163 KOG2862 Alanine-glyoxylate ami 72.5 62 0.0013 28.9 10.4 82 70-152 69-153 (385)
164 PF00106 adh_short: short chai 72.2 39 0.00085 25.9 8.8 69 70-138 2-75 (167)
165 PRK08993 2-deoxy-D-gluconate 3 72.0 52 0.0011 27.5 10.1 71 69-140 11-82 (253)
166 cd08243 quinone_oxidoreductase 72.0 62 0.0013 27.6 10.8 56 63-121 138-193 (320)
167 KOG0023 Alcohol dehydrogenase, 71.5 24 0.00051 31.6 7.7 61 60-123 174-234 (360)
168 cd08242 MDR_like Medium chain 70.8 32 0.00069 29.8 8.7 57 60-120 148-204 (319)
169 PRK08226 short chain dehydroge 70.8 36 0.00078 28.5 8.9 72 69-140 7-79 (263)
170 PRK07523 gluconate 5-dehydroge 70.8 34 0.00073 28.6 8.6 55 69-123 11-66 (255)
171 PRK05396 tdh L-threonine 3-deh 70.7 35 0.00076 29.9 9.1 52 66-120 162-213 (341)
172 cd05282 ETR_like 2-enoyl thioe 70.7 42 0.00091 28.9 9.5 55 62-119 133-187 (323)
173 COG1751 Uncharacterized conser 70.7 49 0.0011 26.2 8.5 75 43-122 7-90 (186)
174 cd08291 ETR_like_1 2-enoyl thi 70.5 38 0.00083 29.5 9.2 50 70-122 145-195 (324)
175 PRK08277 D-mannonate oxidoredu 70.4 38 0.00083 28.7 9.0 72 69-140 11-84 (278)
176 TIGR02818 adh_III_F_hyde S-(hy 70.4 39 0.00086 30.3 9.4 57 61-120 179-235 (368)
177 cd08246 crotonyl_coA_red croto 70.3 21 0.00045 32.3 7.7 55 63-120 189-243 (393)
178 PRK12828 short chain dehydroge 70.3 57 0.0012 26.5 9.9 71 69-140 8-79 (239)
179 cd08288 MDR_yhdh Yhdh putative 70.0 43 0.00093 28.9 9.4 51 67-120 146-196 (324)
180 PRK08303 short chain dehydroge 69.9 62 0.0013 28.3 10.4 73 69-141 9-93 (305)
181 cd08244 MDR_enoyl_red Possible 69.8 57 0.0012 28.1 10.1 57 60-119 135-191 (324)
182 TIGR01832 kduD 2-deoxy-D-gluco 69.8 48 0.001 27.4 9.4 71 69-140 6-77 (248)
183 PRK06348 aspartate aminotransf 69.8 85 0.0018 28.2 12.5 83 70-153 90-174 (384)
184 PRK15481 transcriptional regul 69.7 58 0.0013 29.9 10.6 80 71-153 143-224 (431)
185 PRK07097 gluconate 5-dehydroge 69.7 38 0.00082 28.5 8.8 72 69-140 11-84 (265)
186 TIGR00692 tdh L-threonine 3-de 69.5 46 0.00099 29.2 9.5 53 65-120 159-211 (340)
187 PRK05866 short chain dehydroge 69.4 49 0.0011 28.6 9.5 71 70-140 42-114 (293)
188 cd08285 NADP_ADH NADP(H)-depen 69.3 67 0.0015 28.3 10.6 58 60-120 159-216 (351)
189 PRK06114 short chain dehydroge 68.9 64 0.0014 26.9 10.0 55 69-123 9-65 (254)
190 cd08277 liver_alcohol_DH_like 68.9 42 0.00091 30.0 9.3 57 61-120 178-234 (365)
191 cd08231 MDR_TM0436_like Hypoth 68.7 84 0.0018 27.8 12.3 55 62-120 172-227 (361)
192 cd08258 Zn_ADH4 Alcohol dehydr 68.6 77 0.0017 27.4 10.7 54 62-117 159-212 (306)
193 PRK06194 hypothetical protein; 68.6 67 0.0015 27.3 10.2 72 69-140 7-80 (287)
194 PRK15408 autoinducer 2-binding 68.4 87 0.0019 27.9 17.6 146 54-209 71-243 (336)
195 COG1064 AdhP Zn-dependent alco 68.4 32 0.0007 30.9 8.1 62 58-123 157-218 (339)
196 PRK08862 short chain dehydroge 68.1 41 0.0009 27.9 8.5 73 69-141 6-80 (227)
197 PRK08340 glucose-1-dehydrogena 68.1 71 0.0015 26.7 11.7 30 71-100 3-32 (259)
198 TIGR02824 quinone_pig3 putativ 67.8 76 0.0017 27.0 11.1 58 60-120 132-189 (325)
199 PRK07791 short chain dehydroge 67.7 70 0.0015 27.5 10.1 73 69-141 7-90 (286)
200 PRK12939 short chain dehydroge 67.6 47 0.001 27.4 8.8 55 69-123 8-63 (250)
201 PRK08261 fabG 3-ketoacyl-(acyl 67.5 77 0.0017 29.2 11.0 72 68-140 210-281 (450)
202 PRK06128 oxidoreductase; Provi 67.3 82 0.0018 27.2 10.6 72 69-140 56-131 (300)
203 PRK07666 fabG 3-ketoacyl-(acyl 67.2 50 0.0011 27.2 8.9 55 70-124 9-64 (239)
204 cd08284 FDH_like_2 Glutathione 67.1 84 0.0018 27.4 10.8 53 63-118 163-215 (344)
205 COG0078 ArgF Ornithine carbamo 67.1 39 0.00085 29.9 8.2 54 70-123 155-214 (310)
206 PRK08063 enoyl-(acyl carrier p 66.9 64 0.0014 26.6 9.5 56 69-124 5-62 (250)
207 PRK05557 fabG 3-ketoacyl-(acyl 66.7 63 0.0014 26.4 9.4 55 70-124 7-63 (248)
208 PRK12937 short chain dehydroge 66.5 72 0.0016 26.2 10.3 72 69-140 6-80 (245)
209 cd05286 QOR2 Quinone oxidoredu 66.2 80 0.0017 26.7 11.0 57 62-121 131-187 (320)
210 PRK05370 argininosuccinate syn 66.2 1.2E+02 0.0025 28.5 11.8 130 68-207 11-156 (447)
211 PRK02610 histidinol-phosphate 66.2 46 0.001 29.9 9.0 53 71-123 93-145 (374)
212 PF04989 CmcI: Cephalosporin h 66.1 20 0.00043 29.8 6.0 46 163-210 23-69 (206)
213 PF07279 DUF1442: Protein of u 66.0 34 0.00075 28.7 7.3 56 58-116 34-94 (218)
214 PRK08217 fabG 3-ketoacyl-(acyl 65.9 50 0.0011 27.2 8.7 55 69-123 6-61 (253)
215 PTZ00079 NADP-specific glutama 65.9 46 0.00099 31.2 8.8 53 49-101 217-269 (454)
216 PRK06172 short chain dehydroge 65.9 52 0.0011 27.4 8.8 55 69-123 8-63 (253)
217 PRK05876 short chain dehydroge 65.8 52 0.0011 28.1 8.9 73 69-141 7-81 (275)
218 cd08269 Zn_ADH9 Alcohol dehydr 65.8 85 0.0018 26.8 11.3 55 61-119 123-178 (312)
219 COG1063 Tdh Threonine dehydrog 65.8 1E+02 0.0022 27.6 14.6 51 71-123 171-222 (350)
220 PRK05786 fabG 3-ketoacyl-(acyl 65.4 52 0.0011 27.0 8.6 33 69-101 6-38 (238)
221 PRK08643 acetoin reductase; Va 65.4 59 0.0013 27.1 9.0 54 70-123 4-58 (256)
222 PRK10083 putative oxidoreducta 65.1 84 0.0018 27.4 10.3 60 59-121 152-212 (339)
223 PRK06181 short chain dehydroge 64.9 50 0.0011 27.6 8.6 71 70-140 3-75 (263)
224 PF04127 DFP: DNA / pantothena 64.8 55 0.0012 26.7 8.3 59 74-141 25-83 (185)
225 COG0300 DltE Short-chain dehyd 64.7 53 0.0012 28.5 8.5 71 69-139 7-80 (265)
226 cd08298 CAD2 Cinnamyl alcohol 64.6 49 0.0011 28.7 8.7 54 61-118 161-214 (329)
227 cd08261 Zn_ADH7 Alcohol dehydr 64.4 97 0.0021 27.0 10.9 53 61-117 153-205 (337)
228 cd08267 MDR1 Medium chain dehy 64.1 57 0.0012 27.8 9.0 52 62-117 138-189 (319)
229 COG2247 LytB Putative cell wal 64.1 62 0.0013 28.8 8.8 71 72-142 55-127 (337)
230 PRK05867 short chain dehydroge 64.0 57 0.0012 27.2 8.7 72 69-140 10-83 (253)
231 PRK07792 fabG 3-ketoacyl-(acyl 63.8 64 0.0014 28.1 9.2 56 69-124 13-70 (306)
232 cd08250 Mgc45594_like Mgc45594 63.7 98 0.0021 26.8 11.6 55 62-119 134-188 (329)
233 PLN02527 aspartate carbamoyltr 63.7 80 0.0017 27.9 9.7 45 78-122 163-210 (306)
234 PRK11706 TDP-4-oxo-6-deoxy-D-g 63.7 34 0.00074 30.8 7.7 55 70-124 47-101 (375)
235 PF02310 B12-binding: B12 bind 63.6 49 0.0011 24.1 7.4 92 83-184 19-114 (121)
236 cd08253 zeta_crystallin Zeta-c 63.5 92 0.002 26.4 10.9 55 63-120 140-194 (325)
237 PRK06124 gluconate 5-dehydroge 63.4 58 0.0013 27.1 8.6 55 69-123 12-67 (256)
238 TIGR03206 benzo_BadH 2-hydroxy 63.2 58 0.0013 26.9 8.6 71 69-139 4-76 (250)
239 cd08260 Zn_ADH6 Alcohol dehydr 63.2 1E+02 0.0023 26.9 10.6 52 62-117 160-211 (345)
240 cd05288 PGDH Prostaglandin deh 63.2 99 0.0022 26.7 11.1 56 62-120 140-196 (329)
241 PRK07035 short chain dehydroge 63.0 66 0.0014 26.7 8.9 73 69-141 9-83 (252)
242 PRK08278 short chain dehydroge 63.0 88 0.0019 26.5 9.8 55 69-123 7-69 (273)
243 PRK12429 3-hydroxybutyrate deh 63.0 69 0.0015 26.5 9.0 55 69-123 5-60 (258)
244 TIGR03538 DapC_gpp succinyldia 62.9 91 0.002 28.1 10.3 53 71-123 92-145 (393)
245 PLN02827 Alcohol dehydrogenase 62.9 72 0.0016 28.8 9.6 57 61-120 187-243 (378)
246 cd08299 alcohol_DH_class_I_II_ 62.7 1E+02 0.0022 27.6 10.6 56 60-118 183-238 (373)
247 PRK11891 aspartate carbamoyltr 62.6 53 0.0012 30.6 8.6 45 78-122 253-300 (429)
248 PRK12938 acetyacetyl-CoA reduc 62.3 63 0.0014 26.6 8.6 71 69-139 4-77 (246)
249 PRK00779 ornithine carbamoyltr 62.3 82 0.0018 27.8 9.5 61 61-122 146-209 (304)
250 PRK09422 ethanol-active dehydr 62.2 1E+02 0.0022 26.9 10.2 58 61-122 156-214 (338)
251 cd05211 NAD_bind_Glu_Leu_Phe_V 62.1 46 0.001 27.8 7.6 53 50-102 4-56 (217)
252 PRK07890 short chain dehydroge 62.1 63 0.0014 26.8 8.6 55 69-123 6-61 (258)
253 cd08278 benzyl_alcohol_DH Benz 62.0 1.1E+02 0.0024 27.2 10.6 57 62-121 181-237 (365)
254 PRK12826 3-ketoacyl-(acyl-carr 61.9 67 0.0014 26.4 8.7 55 69-123 7-62 (251)
255 PRK07814 short chain dehydroge 61.9 63 0.0014 27.2 8.6 54 69-122 11-65 (263)
256 PRK06079 enoyl-(acyl carrier p 61.6 60 0.0013 27.2 8.4 32 69-100 8-41 (252)
257 PRK08085 gluconate 5-dehydroge 61.5 70 0.0015 26.6 8.8 72 69-140 10-83 (254)
258 TIGR02817 adh_fam_1 zinc-bindi 61.5 74 0.0016 27.6 9.3 50 68-120 149-199 (336)
259 PRK11658 UDP-4-amino-4-deoxy-L 61.5 71 0.0015 28.9 9.3 52 72-123 51-102 (379)
260 cd05188 MDR Medium chain reduc 61.5 92 0.002 25.7 9.8 51 63-117 130-180 (271)
261 cd05279 Zn_ADH1 Liver alcohol 61.4 1.1E+02 0.0024 27.2 10.5 54 61-117 177-230 (365)
262 cd08264 Zn_ADH_like2 Alcohol d 61.2 58 0.0013 28.2 8.5 50 61-117 156-205 (325)
263 PF08659 KR: KR domain; Inter 60.8 59 0.0013 25.9 7.8 72 70-141 2-79 (181)
264 PRK07806 short chain dehydroge 60.2 93 0.002 25.6 9.3 71 69-139 7-80 (248)
265 PLN02342 ornithine carbamoyltr 60.2 59 0.0013 29.4 8.3 61 61-122 188-251 (348)
266 cd05313 NAD_bind_2_Glu_DH NAD( 60.1 53 0.0011 28.3 7.7 53 49-101 18-70 (254)
267 PRK03692 putative UDP-N-acetyl 60.0 84 0.0018 26.8 8.9 113 83-207 71-189 (243)
268 PRK06949 short chain dehydroge 59.9 66 0.0014 26.7 8.4 71 69-139 10-82 (258)
269 COG0159 TrpA Tryptophan syntha 59.8 97 0.0021 26.9 9.2 69 49-122 108-178 (265)
270 PRK12935 acetoacetyl-CoA reduc 59.8 81 0.0018 26.0 8.9 56 69-124 7-64 (247)
271 PRK08017 oxidoreductase; Provi 59.7 1E+02 0.0022 25.5 9.7 51 70-123 4-54 (256)
272 PRK08213 gluconate 5-dehydroge 59.7 78 0.0017 26.4 8.8 56 69-124 13-69 (259)
273 PRK07550 hypothetical protein; 59.6 1.3E+02 0.0029 26.9 12.8 53 70-123 91-143 (386)
274 cd08251 polyketide_synthase po 59.6 1.1E+02 0.0023 25.8 11.2 55 61-118 114-168 (303)
275 PF00091 Tubulin: Tubulin/FtsZ 59.4 36 0.00077 28.3 6.5 94 151-246 90-204 (216)
276 cd08290 ETR 2-enoyl thioester 59.4 72 0.0016 27.8 8.9 60 63-122 142-202 (341)
277 PRK07677 short chain dehydroge 59.3 77 0.0017 26.3 8.7 71 70-140 3-75 (252)
278 cd08248 RTN4I1 Human Reticulon 59.1 68 0.0015 28.0 8.7 49 68-120 163-211 (350)
279 cd08249 enoyl_reductase_like e 59.0 72 0.0016 28.0 8.8 51 66-120 153-203 (339)
280 PLN02702 L-idonate 5-dehydroge 59.0 1E+02 0.0023 27.3 9.9 58 61-121 175-232 (364)
281 PRK15454 ethanol dehydrogenase 58.9 65 0.0014 29.5 8.6 90 91-188 24-119 (395)
282 TIGR00658 orni_carb_tr ornithi 58.9 74 0.0016 28.1 8.7 61 61-122 142-208 (304)
283 cd05281 TDH Threonine dehydrog 58.8 77 0.0017 27.8 8.9 52 65-119 161-212 (341)
284 PRK05653 fabG 3-ketoacyl-(acyl 58.7 96 0.0021 25.2 9.1 54 70-123 7-61 (246)
285 PRK12779 putative bifunctional 58.6 65 0.0014 33.2 9.3 32 69-100 306-337 (944)
286 cd08259 Zn_ADH5 Alcohol dehydr 58.5 1E+02 0.0022 26.5 9.6 53 63-118 158-210 (332)
287 PRK06702 O-acetylhomoserine am 58.5 1.3E+02 0.0027 28.1 10.5 79 71-154 78-160 (432)
288 COG0075 Serine-pyruvate aminot 58.4 73 0.0016 29.2 8.6 31 71-101 82-112 (383)
289 PRK09134 short chain dehydroge 58.3 1.1E+02 0.0024 25.5 9.8 55 69-123 10-66 (258)
290 PRK08936 glucose-1-dehydrogena 58.1 1.1E+02 0.0024 25.5 9.7 73 69-141 8-83 (261)
291 TIGR02823 oxido_YhdH putative 58.0 78 0.0017 27.3 8.8 53 65-120 142-195 (323)
292 cd08282 PFDH_like Pseudomonas 58.0 86 0.0019 28.1 9.2 55 61-118 170-224 (375)
293 TIGR02095 glgA glycogen/starch 57.9 69 0.0015 29.8 8.8 30 74-103 16-45 (473)
294 PRK09257 aromatic amino acid a 57.9 1.5E+02 0.0031 26.8 11.7 82 40-123 65-149 (396)
295 PF01262 AlaDh_PNT_C: Alanine 57.8 48 0.001 26.2 6.8 50 70-122 21-70 (168)
296 PRK05650 short chain dehydroge 57.7 1.1E+02 0.0024 25.7 9.5 70 71-140 3-74 (270)
297 cd05278 FDH_like Formaldehyde 57.6 90 0.0019 27.2 9.2 56 61-119 161-216 (347)
298 cd08185 Fe-ADH1 Iron-containin 57.5 86 0.0019 28.4 9.1 89 94-188 4-96 (380)
299 PRK05826 pyruvate kinase; Prov 57.5 1.7E+02 0.0037 27.6 11.3 124 84-212 264-407 (465)
300 KOG1197 Predicted quinone oxid 57.4 82 0.0018 27.5 8.2 55 60-117 139-193 (336)
301 TIGR02415 23BDH acetoin reduct 57.3 94 0.002 25.7 8.9 71 70-140 2-74 (254)
302 PRK08192 aspartate carbamoyltr 57.3 82 0.0018 28.3 8.7 45 78-122 171-218 (338)
303 PRK06113 7-alpha-hydroxysteroi 57.2 91 0.002 26.0 8.8 72 69-140 12-85 (255)
304 cd00401 AdoHcyase S-adenosyl-L 56.8 81 0.0017 29.2 8.8 53 63-119 197-249 (413)
305 cd08286 FDH_like_ADH2 formalde 56.8 91 0.002 27.3 9.0 53 62-118 161-214 (345)
306 PRK05854 short chain dehydroge 56.5 1.1E+02 0.0023 26.8 9.3 73 69-141 15-91 (313)
307 PF13580 SIS_2: SIS domain; PD 56.4 24 0.00053 27.0 4.7 35 65-99 101-137 (138)
308 TIGR02379 ECA_wecE TDP-4-keto- 56.3 89 0.0019 28.3 9.0 55 70-124 47-101 (376)
309 PRK06500 short chain dehydroge 56.2 1.1E+02 0.0024 25.1 9.4 70 69-140 7-77 (249)
310 PRK08306 dipicolinate synthase 56.2 1.3E+02 0.0028 26.4 9.7 47 70-119 153-199 (296)
311 PRK12744 short chain dehydroge 56.2 94 0.002 25.9 8.7 72 69-140 9-86 (257)
312 PRK06483 dihydromonapterin red 56.2 1.1E+02 0.0024 25.0 10.2 68 70-140 4-71 (236)
313 cd05285 sorbitol_DH Sorbitol d 56.1 1.2E+02 0.0025 26.6 9.7 58 60-120 155-212 (343)
314 PRK06701 short chain dehydroge 55.9 1.3E+02 0.0029 25.8 10.0 55 69-123 47-103 (290)
315 cd05280 MDR_yhdh_yhfp Yhdh and 55.9 1.2E+02 0.0026 26.0 9.5 49 69-120 148-196 (325)
316 PRK06505 enoyl-(acyl carrier p 55.8 1.3E+02 0.0028 25.6 9.7 72 69-141 8-83 (271)
317 cd08238 sorbose_phosphate_red 55.8 94 0.002 28.3 9.2 59 62-122 170-238 (410)
318 PRK12745 3-ketoacyl-(acyl-carr 55.6 1.2E+02 0.0026 25.1 9.4 71 70-140 4-77 (256)
319 PRK12771 putative glutamate sy 55.4 34 0.00074 32.8 6.4 52 70-121 138-207 (564)
320 PRK09291 short chain dehydroge 55.3 53 0.0011 27.3 7.0 53 70-122 4-57 (257)
321 cd05284 arabinose_DH_like D-ar 55.1 97 0.0021 27.0 8.9 52 64-119 164-216 (340)
322 TIGR03325 BphB_TodD cis-2,3-di 55.0 1.3E+02 0.0027 25.2 10.1 69 69-140 6-76 (262)
323 PRK04284 ornithine carbamoyltr 54.9 1.3E+02 0.0029 26.9 9.7 45 78-122 166-216 (332)
324 PRK08265 short chain dehydroge 54.8 1.3E+02 0.0028 25.2 9.4 70 69-140 7-77 (261)
325 PRK15407 lipopolysaccharide bi 54.7 1.2E+02 0.0025 28.3 9.7 53 71-123 80-140 (438)
326 cd08245 CAD Cinnamyl alcohol d 54.7 1.1E+02 0.0024 26.5 9.2 56 62-121 157-212 (330)
327 cd08272 MDR6 Medium chain dehy 54.5 1.4E+02 0.0029 25.5 10.7 57 61-121 138-194 (326)
328 PRK12809 putative oxidoreducta 54.4 50 0.0011 32.3 7.5 54 69-122 310-381 (639)
329 PRK06841 short chain dehydroge 54.4 1.2E+02 0.0027 25.0 9.4 33 69-101 16-48 (255)
330 TIGR00561 pntA NAD(P) transhyd 54.1 1.2E+02 0.0025 29.1 9.6 51 70-123 165-215 (511)
331 cd06324 PBP1_ABC_sugar_binding 54.0 1.4E+02 0.0031 25.6 18.5 46 163-211 192-241 (305)
332 TIGR01831 fabG_rel 3-oxoacyl-( 53.8 1.2E+02 0.0026 24.7 9.9 70 72-141 2-74 (239)
333 PRK06077 fabG 3-ketoacyl-(acyl 53.8 96 0.0021 25.5 8.3 55 69-123 7-63 (252)
334 PRK06720 hypothetical protein; 53.6 1.1E+02 0.0024 24.2 9.9 73 69-141 17-91 (169)
335 COG0026 PurK Phosphoribosylami 53.4 84 0.0018 28.6 8.0 37 71-107 3-40 (375)
336 PF12000 Glyco_trans_4_3: Gkyc 53.2 30 0.00064 27.9 4.7 40 162-207 55-94 (171)
337 PLN02583 cinnamoyl-CoA reducta 53.2 1.1E+02 0.0024 26.4 8.8 33 69-101 7-39 (297)
338 TIGR01963 PHB_DH 3-hydroxybuty 53.2 99 0.0021 25.5 8.3 54 70-123 3-57 (255)
339 PRK13376 pyrB bifunctional asp 53.1 69 0.0015 30.7 7.9 45 78-122 186-233 (525)
340 PRK08594 enoyl-(acyl carrier p 53.0 1.4E+02 0.003 25.1 10.0 73 69-141 8-85 (257)
341 PRK08264 short chain dehydroge 52.9 78 0.0017 25.9 7.6 33 69-101 7-40 (238)
342 PRK08339 short chain dehydroge 52.7 1.1E+02 0.0023 25.8 8.6 32 69-100 9-40 (263)
343 PHA02542 41 41 helicase; Provi 52.7 2.1E+02 0.0045 27.1 11.6 148 63-211 185-354 (473)
344 TIGR01316 gltA glutamate synth 52.7 64 0.0014 30.0 7.6 53 70-122 273-330 (449)
345 cd08262 Zn_ADH8 Alcohol dehydr 52.7 1.3E+02 0.0028 26.2 9.3 55 60-117 154-208 (341)
346 COG1922 WecG Teichoic acid bio 52.6 1.1E+02 0.0023 26.5 8.2 120 81-208 72-194 (253)
347 KOG1176 Acyl-CoA synthetase [L 52.5 2.2E+02 0.0048 27.4 12.0 60 65-124 69-128 (537)
348 PF04122 CW_binding_2: Putativ 52.5 78 0.0017 22.1 9.9 77 44-125 4-83 (92)
349 PRK02255 putrescine carbamoylt 52.4 1.1E+02 0.0023 27.6 8.6 49 74-122 160-214 (338)
350 PRK06836 aspartate aminotransf 52.3 1.8E+02 0.0039 26.2 10.9 82 71-153 98-180 (394)
351 PRK08416 7-alpha-hydroxysteroi 52.2 1.4E+02 0.003 25.0 10.2 73 69-141 9-85 (260)
352 PF13460 NAD_binding_10: NADH( 52.2 56 0.0012 25.6 6.3 46 72-122 2-47 (183)
353 PRK07774 short chain dehydroge 52.2 1.3E+02 0.0028 24.8 8.9 72 69-140 7-80 (250)
354 PRK10624 L-1,2-propanediol oxi 52.1 68 0.0015 29.2 7.5 89 93-188 7-100 (382)
355 cd08279 Zn_ADH_class_III Class 51.9 1.7E+02 0.0037 25.9 11.1 54 61-117 176-229 (363)
356 KOG1177 Long chain fatty acid 51.9 2.2E+02 0.0048 27.2 10.6 90 33-123 68-157 (596)
357 PF02887 PK_C: Pyruvate kinase 51.8 50 0.0011 24.4 5.6 44 163-212 7-50 (117)
358 PRK06138 short chain dehydroge 51.7 1.3E+02 0.0029 24.6 9.0 71 69-140 6-78 (252)
359 PRK05565 fabG 3-ketoacyl-(acyl 51.6 1.3E+02 0.0029 24.5 8.9 70 70-139 7-79 (247)
360 PRK04870 histidinol-phosphate 51.6 1.1E+02 0.0023 27.2 8.7 82 71-153 83-165 (356)
361 PRK05166 histidinol-phosphate 51.6 95 0.0021 27.8 8.4 82 71-153 90-171 (371)
362 PRK07985 oxidoreductase; Provi 51.6 1.3E+02 0.0028 26.0 9.0 73 69-141 50-126 (294)
363 PRK06947 glucose-1-dehydrogena 51.5 96 0.0021 25.5 8.0 70 70-139 4-76 (248)
364 PRK09072 short chain dehydroge 51.5 1.1E+02 0.0025 25.5 8.5 54 69-123 6-60 (263)
365 PRK06101 short chain dehydroge 51.5 1.4E+02 0.003 24.6 9.0 63 70-136 3-67 (240)
366 cd08240 6_hydroxyhexanoate_dh_ 51.4 1.7E+02 0.0037 25.7 11.1 52 65-119 173-224 (350)
367 PRK07904 short chain dehydroge 51.4 1.5E+02 0.0032 24.9 9.3 54 69-122 9-66 (253)
368 PRK07201 short chain dehydroge 51.3 1.1E+02 0.0023 29.8 9.2 73 69-141 372-446 (657)
369 PLN00175 aminotransferase fami 51.2 2E+02 0.0042 26.3 12.7 82 72-154 118-200 (413)
370 cd05289 MDR_like_2 alcohol deh 51.2 1.5E+02 0.0032 24.9 10.0 51 62-116 139-189 (309)
371 PRK07324 transaminase; Validat 51.2 1.1E+02 0.0023 27.6 8.7 52 71-123 82-133 (373)
372 PRK14031 glutamate dehydrogena 51.1 77 0.0017 29.7 7.7 53 49-101 208-260 (444)
373 PRK05693 short chain dehydroge 51.1 1.5E+02 0.0032 25.0 10.7 67 70-140 3-69 (274)
374 PTZ00377 alanine aminotransfer 50.9 2.1E+02 0.0046 26.7 11.2 54 70-123 139-192 (481)
375 PRK15438 erythronate-4-phospha 50.8 1.7E+02 0.0036 26.8 9.7 130 44-197 88-223 (378)
376 PRK12384 sorbitol-6-phosphate 50.8 1.4E+02 0.0031 24.7 10.8 32 70-101 4-35 (259)
377 PRK12859 3-ketoacyl-(acyl-carr 50.8 1.1E+02 0.0023 25.6 8.2 72 69-140 7-93 (256)
378 PRK05957 aspartate aminotransf 50.7 1.1E+02 0.0023 27.7 8.7 53 71-124 91-143 (389)
379 PRK13243 glyoxylate reductase; 50.7 1.3E+02 0.0028 26.9 8.9 116 70-211 151-268 (333)
380 cd08276 MDR7 Medium chain dehy 50.6 1.6E+02 0.0035 25.2 11.3 55 62-120 155-209 (336)
381 COG2518 Pcm Protein-L-isoaspar 50.6 92 0.002 26.0 7.4 112 52-185 57-172 (209)
382 cd08241 QOR1 Quinone oxidoredu 50.5 1.5E+02 0.0033 25.0 10.8 56 62-120 134-189 (323)
383 PRK08251 short chain dehydroge 50.5 1.3E+02 0.0028 24.7 8.6 71 70-140 4-78 (248)
384 PRK08912 hypothetical protein; 50.2 1.9E+02 0.0041 25.9 12.7 52 71-123 89-140 (387)
385 PRK07775 short chain dehydroge 50.2 1.4E+02 0.0031 25.2 9.0 69 70-138 12-82 (274)
386 PRK14807 histidinol-phosphate 50.0 1.1E+02 0.0024 27.1 8.6 53 71-124 78-130 (351)
387 PRK08690 enoyl-(acyl carrier p 49.8 1.6E+02 0.0034 24.8 9.3 72 69-141 7-82 (261)
388 PRK06197 short chain dehydroge 49.6 1.4E+02 0.003 25.7 9.0 72 69-140 17-92 (306)
389 PRK08862 short chain dehydroge 49.5 1.5E+02 0.0032 24.5 9.7 75 105-184 19-93 (227)
390 PRK09242 tropinone reductase; 49.5 1.5E+02 0.0032 24.7 8.8 72 69-140 10-85 (257)
391 cd00616 AHBA_syn 3-amino-5-hyd 49.5 1.4E+02 0.0031 26.1 9.1 52 72-123 36-87 (352)
392 PRK09147 succinyldiaminopimela 49.4 2E+02 0.0043 25.9 13.6 78 43-123 64-146 (396)
393 PRK07576 short chain dehydroge 49.3 1.4E+02 0.003 25.1 8.7 55 69-123 10-65 (264)
394 PRK05872 short chain dehydroge 49.2 1.6E+02 0.0034 25.4 9.2 69 69-141 10-83 (296)
395 PRK05717 oxidoreductase; Valid 49.1 1.5E+02 0.0033 24.5 10.1 71 69-141 11-82 (255)
396 PRK06198 short chain dehydroge 49.1 1.5E+02 0.0033 24.5 8.9 72 69-140 7-81 (260)
397 PRK09414 glutamate dehydrogena 48.9 85 0.0018 29.4 7.6 52 49-100 212-263 (445)
398 PRK06463 fabG 3-ketoacyl-(acyl 48.9 1.6E+02 0.0034 24.5 11.0 70 69-141 8-77 (255)
399 PRK02102 ornithine carbamoyltr 48.8 1.8E+02 0.004 26.0 9.5 60 61-122 149-216 (331)
400 PLN02178 cinnamyl-alcohol dehy 48.7 62 0.0014 29.2 6.7 52 66-120 177-228 (375)
401 cd08176 LPO Lactadehyde:propan 48.6 1.2E+02 0.0026 27.5 8.6 89 93-188 5-98 (377)
402 cd08270 MDR4 Medium chain dehy 48.6 1.7E+02 0.0037 24.8 9.4 51 67-120 132-182 (305)
403 cd05283 CAD1 Cinnamyl alcohol 48.6 1.6E+02 0.0035 25.7 9.3 53 65-121 167-219 (337)
404 PRK07063 short chain dehydroge 48.4 1.6E+02 0.0034 24.5 9.8 73 69-141 8-84 (260)
405 PRK14804 ornithine carbamoyltr 48.4 1.1E+02 0.0024 27.2 8.0 32 73-104 158-189 (311)
406 PRK06200 2,3-dihydroxy-2,3-dih 48.2 1.6E+02 0.0035 24.5 9.3 70 69-141 7-78 (263)
407 TIGR03537 DapC succinyldiamino 48.1 2E+02 0.0042 25.4 11.6 110 42-154 34-149 (350)
408 COG1167 ARO8 Transcriptional r 48.0 2.4E+02 0.0051 26.4 11.8 81 71-155 157-241 (459)
409 PRK07231 fabG 3-ketoacyl-(acyl 47.7 1.6E+02 0.0034 24.2 9.3 54 69-123 6-60 (251)
410 PRK09423 gldA glycerol dehydro 47.2 1.5E+02 0.0032 26.8 8.9 30 94-123 8-37 (366)
411 PLN02586 probable cinnamyl alc 47.2 1.1E+02 0.0024 27.4 8.0 55 63-120 179-233 (360)
412 PRK00050 16S rRNA m(4)C1402 me 47.1 41 0.00088 29.7 5.0 50 159-211 3-54 (296)
413 cd08265 Zn_ADH3 Alcohol dehydr 47.0 1.3E+02 0.0027 27.1 8.5 55 63-120 199-253 (384)
414 cd05276 p53_inducible_oxidored 46.9 1.8E+02 0.0038 24.5 11.1 54 63-119 135-188 (323)
415 cd08235 iditol_2_DH_like L-idi 46.8 1.9E+02 0.0042 25.1 11.6 55 61-118 159-213 (343)
416 PRK12747 short chain dehydroge 46.8 1.2E+02 0.0026 25.1 7.9 54 69-122 5-60 (252)
417 cd08550 GlyDH-like Glycerol_de 46.7 1.2E+02 0.0026 27.1 8.2 34 174-210 77-110 (349)
418 PRK10538 malonic semialdehyde 46.6 1.7E+02 0.0036 24.2 9.3 67 71-140 3-71 (248)
419 cd08187 BDH Butanol dehydrogen 46.6 2.3E+02 0.0049 25.7 12.2 90 93-188 6-99 (382)
420 cd08254 hydroxyacyl_CoA_DH 6-h 46.3 1.9E+02 0.0042 24.8 10.9 57 62-122 160-216 (338)
421 TIGR00379 cobB cobyrinic acid 46.2 2.5E+02 0.0055 26.2 12.9 47 164-211 102-149 (449)
422 PRK08068 transaminase; Reviewe 46.1 2.2E+02 0.0048 25.5 12.0 52 71-123 96-147 (389)
423 PF00670 AdoHcyase_NAD: S-aden 46.0 89 0.0019 25.0 6.4 89 70-185 24-112 (162)
424 PF06068 TIP49: TIP49 C-termin 45.8 1E+02 0.0022 28.3 7.3 56 44-101 27-86 (398)
425 TIGR03552 F420_cofC 2-phospho- 45.7 1.5E+02 0.0034 23.6 11.0 71 110-186 60-130 (195)
426 cd08170 GlyDH Glycerol dehydro 45.7 1.1E+02 0.0024 27.3 7.8 34 174-210 77-110 (351)
427 PLN02928 oxidoreductase family 45.6 1.2E+02 0.0025 27.4 7.9 128 70-211 160-290 (347)
428 PRK15469 ghrA bifunctional gly 45.5 1.8E+02 0.0038 25.8 8.9 116 70-211 137-254 (312)
429 PRK07326 short chain dehydroge 45.4 1.7E+02 0.0036 23.8 9.5 32 69-100 7-38 (237)
430 PF11760 CbiG_N: Cobalamin syn 45.1 80 0.0017 22.3 5.3 43 173-215 10-52 (84)
431 PRK06953 short chain dehydroge 45.0 1.7E+02 0.0036 23.7 9.9 51 70-123 3-53 (222)
432 PRK07067 sorbitol dehydrogenas 45.0 1.8E+02 0.0039 24.1 9.2 70 69-140 7-77 (257)
433 PLN02253 xanthoxin dehydrogena 44.9 1.5E+02 0.0032 25.1 8.2 32 69-100 19-50 (280)
434 PRK07069 short chain dehydroge 44.9 1.7E+02 0.0038 23.9 9.7 31 71-101 2-32 (251)
435 PRK08159 enoyl-(acyl carrier p 44.8 1.6E+02 0.0034 25.0 8.4 68 109-183 30-97 (272)
436 PTZ00433 tyrosine aminotransfe 44.8 1.6E+02 0.0034 26.9 8.8 52 71-123 106-157 (412)
437 PRK12775 putative trifunctiona 44.8 1.9E+02 0.0041 30.2 10.1 32 70-101 431-462 (1006)
438 cd08181 PPD-like 1,3-propanedi 44.7 1.9E+02 0.0042 25.9 9.2 30 94-123 4-33 (357)
439 CHL00194 ycf39 Ycf39; Provisio 44.7 94 0.002 27.1 7.1 31 71-101 3-33 (317)
440 PRK13581 D-3-phosphoglycerate 44.5 2E+02 0.0042 27.6 9.6 104 70-197 141-246 (526)
441 cd08191 HHD 6-hydroxyhexanoate 44.2 2.5E+02 0.0054 25.5 10.0 14 174-188 79-92 (386)
442 TIGR03877 thermo_KaiC_1 KaiC d 44.2 80 0.0017 26.5 6.3 55 63-117 16-74 (237)
443 cd08255 2-desacetyl-2-hydroxye 44.2 1.9E+02 0.0041 24.2 8.9 51 61-115 91-142 (277)
444 PRK07832 short chain dehydroge 44.2 1.9E+02 0.0042 24.3 8.8 70 70-140 2-75 (272)
445 PRK10537 voltage-gated potassi 44.0 2.6E+02 0.0056 25.7 14.3 44 166-209 293-337 (393)
446 TIGR02638 lactal_redase lactal 44.0 1.6E+02 0.0034 26.8 8.6 89 93-188 6-99 (379)
447 PRK06123 short chain dehydroge 43.9 1.4E+02 0.0031 24.4 7.9 54 70-123 4-59 (248)
448 PLN02623 pyruvate kinase 43.9 3.2E+02 0.0069 26.7 11.6 122 83-212 367-510 (581)
449 PRK09860 putative alcohol dehy 43.8 1.4E+02 0.003 27.2 8.2 89 93-188 8-101 (383)
450 cd08283 FDH_like_1 Glutathione 43.8 2.4E+02 0.0053 25.3 10.0 56 61-119 178-234 (386)
451 PRK12831 putative oxidoreducta 43.6 1.1E+02 0.0024 28.7 7.7 53 70-122 282-339 (464)
452 COG1057 NadD Nicotinic acid mo 43.4 1.2E+02 0.0027 24.9 7.1 30 79-108 18-47 (197)
453 PRK06057 short chain dehydroge 43.3 1.9E+02 0.0041 23.9 10.2 67 69-139 8-75 (255)
454 PRK06202 hypothetical protein; 43.2 36 0.00079 28.3 4.1 37 176-212 63-99 (232)
455 PRK06482 short chain dehydroge 43.2 1.9E+02 0.0041 24.3 8.6 32 70-101 4-35 (276)
456 TIGR03590 PseG pseudaminic aci 43.1 2.2E+02 0.0047 24.5 10.2 81 34-123 2-88 (279)
457 PRK08177 short chain dehydroge 43.0 1.8E+02 0.0039 23.6 9.6 33 70-102 3-35 (225)
458 PRK01077 cobyrinic acid a,c-di 43.0 2.8E+02 0.0061 25.8 11.4 47 164-211 106-153 (451)
459 TIGR01830 3oxo_ACP_reduc 3-oxo 43.0 1.8E+02 0.0039 23.5 8.5 52 72-123 2-55 (239)
460 PRK14805 ornithine carbamoyltr 42.9 94 0.002 27.5 6.7 45 78-122 157-207 (302)
461 PF00702 Hydrolase: haloacid d 42.9 1.2E+02 0.0026 24.1 7.1 66 51-123 131-203 (215)
462 PLN03026 histidinol-phosphate 42.9 1.5E+02 0.0033 26.6 8.4 82 71-153 105-187 (380)
463 TIGR01289 LPOR light-dependent 42.8 1.9E+02 0.0042 25.2 8.8 71 70-140 5-78 (314)
464 cd06450 DOPA_deC_like DOPA dec 42.7 1.5E+02 0.0032 25.9 8.1 52 72-123 60-124 (345)
465 cd00288 Pyruvate_Kinase Pyruva 42.6 2.3E+02 0.005 26.9 9.6 84 47-140 359-449 (480)
466 PLN02514 cinnamyl-alcohol dehy 42.5 2.3E+02 0.0049 25.2 9.4 56 63-121 176-231 (357)
467 TIGR01470 cysG_Nterm siroheme 42.4 1.9E+02 0.004 23.9 8.1 50 71-123 11-60 (205)
468 PRK13982 bifunctional SbtC-lik 42.4 40 0.00086 31.8 4.5 42 76-123 280-321 (475)
469 PRK07777 aminotransferase; Val 42.3 2.2E+02 0.0047 25.5 9.3 52 71-123 87-138 (387)
470 PRK06567 putative bifunctional 42.3 1.2E+02 0.0026 31.6 8.0 33 69-101 383-415 (1028)
471 PF04273 DUF442: Putative phos 42.2 1.4E+02 0.003 22.1 9.1 92 98-191 10-105 (110)
472 PRK09730 putative NAD(P)-bindi 42.2 1.9E+02 0.0041 23.6 9.3 54 70-123 3-58 (247)
473 PRK06180 short chain dehydroge 42.1 2.1E+02 0.0046 24.1 8.9 33 69-101 5-37 (277)
474 cd00640 Trp-synth-beta_II Tryp 42.1 1.1E+02 0.0024 25.6 6.9 68 176-251 50-119 (244)
475 cd08263 Zn_ADH10 Alcohol dehyd 41.9 2.3E+02 0.005 25.1 9.4 52 63-117 183-234 (367)
476 TIGR03588 PseC UDP-4-keto-6-de 41.8 2.6E+02 0.0056 25.0 9.7 50 72-123 47-98 (380)
477 TIGR01264 tyr_amTase_E tyrosin 41.7 2.4E+02 0.0052 25.4 9.5 52 71-123 97-148 (401)
478 cd06451 AGAT_like Alanine-glyo 41.7 1.8E+02 0.0039 25.5 8.6 51 72-123 53-105 (356)
479 PRK12825 fabG 3-ketoacyl-(acyl 41.6 1.9E+02 0.0041 23.4 10.3 54 70-123 8-63 (249)
480 PF00465 Fe-ADH: Iron-containi 41.6 48 0.001 29.8 4.8 109 95-212 2-132 (366)
481 TIGR01829 AcAcCoA_reduct aceto 41.5 1.7E+02 0.0036 23.8 7.9 54 70-123 2-57 (242)
482 PRK07200 aspartate/ornithine c 41.4 1.1E+02 0.0024 28.1 7.1 45 78-122 204-254 (395)
483 cd08183 Fe-ADH2 Iron-containin 41.4 2.4E+02 0.0052 25.5 9.4 83 97-188 4-88 (374)
484 PRK12748 3-ketoacyl-(acyl-carr 41.3 2.1E+02 0.0045 23.8 10.1 72 70-141 7-93 (256)
485 PRK07309 aromatic amino acid a 41.3 2.1E+02 0.0046 25.7 9.1 52 71-123 93-144 (391)
486 TIGR01724 hmd_rel H2-forming N 41.3 2.7E+02 0.0058 25.1 11.3 150 80-252 31-185 (341)
487 PLN02918 pyridoxine (pyridoxam 41.1 2.3E+02 0.005 27.3 9.4 49 70-118 137-192 (544)
488 PRK01713 ornithine carbamoyltr 41.1 1.7E+02 0.0037 26.2 8.1 44 79-122 168-217 (334)
489 PRK14057 epimerase; Provisiona 41.1 2.3E+02 0.005 24.4 8.6 49 91-139 190-242 (254)
490 cd08551 Fe-ADH iron-containing 40.9 2E+02 0.0042 25.9 8.7 85 97-188 4-93 (370)
491 PF00731 AIRC: AIR carboxylase 40.8 1.8E+02 0.0038 23.0 7.2 43 165-211 45-88 (150)
492 TIGR03801 asp_4_decarbox aspar 40.5 3.4E+02 0.0073 26.0 11.4 53 71-123 157-215 (521)
493 PRK07023 short chain dehydroge 40.5 1.7E+02 0.0037 24.0 7.8 50 70-123 3-52 (243)
494 PLN02477 glutamate dehydrogena 40.5 1.4E+02 0.003 27.7 7.6 53 49-101 186-238 (410)
495 PRK05875 short chain dehydroge 40.4 2.2E+02 0.0047 23.9 8.6 71 69-139 8-82 (276)
496 PRK05855 short chain dehydroge 40.3 2.3E+02 0.005 26.6 9.5 73 69-141 316-390 (582)
497 PRK05973 replicative DNA helic 40.2 1.3E+02 0.0028 25.6 6.9 55 63-117 59-117 (237)
498 PF00072 Response_reg: Respons 40.2 1.3E+02 0.0027 21.0 6.5 46 165-212 36-82 (112)
499 PRK15409 bifunctional glyoxyla 40.1 2.5E+02 0.0054 25.0 9.1 104 70-197 146-252 (323)
500 PF06745 KaiC: KaiC; InterPro 40.1 61 0.0013 26.8 4.9 54 63-116 14-72 (226)
No 1
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-58 Score=395.30 Aligned_cols=246 Identities=50% Similarity=0.813 Sum_probs=227.6
Q ss_pred HhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHH
Q 025113 9 RDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (257)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a 88 (257)
+.+.+.+++|||+++.++....+++||+|+|++||+||.|||.+.+|+.+|+++|.|+||. +||++||||+|.+||+.|
T Consensus 3 ~~~~~~iG~TPlvrL~~~~~~~~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG~-tIVE~TSGNTGI~LA~va 81 (300)
T COG0031 3 ESILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGG-TIVEATSGNTGIALAMVA 81 (300)
T ss_pred cchHHHhCCCCcEeecccCCCCCceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCCC-EEEEcCCChHHHHHHHHH
Confidence 4577888999999999998888899999999999999999999999999999999999996 699999999999999999
Q ss_pred HHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCC-HHHHHHHHHHHHHhCCC-eEEeCCCCCCcchHhhHhhHHHH
Q 025113 89 AARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR-FEEILEKGEEILKKTPD-GYLLRQFENPANPKIHYETTGPE 166 (257)
Q Consensus 89 ~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~E 166 (257)
+.+|+++++|||++++.++++.|+.|||+|+.++...+ +..+.+++++++++.|+ .+|++||+||+||.+||.|++.|
T Consensus 82 a~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~E 161 (300)
T COG0031 82 AAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPE 161 (300)
T ss_pred HHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHH
Confidence 99999999999999999999999999999999998444 88899999999999988 77888999999999999999999
Q ss_pred HHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCcccc------------eeccccCCeEE
Q 025113 167 IWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGLF------------IFISYLFRSFV 234 (257)
Q Consensus 167 i~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~~~~------------~i~~~~~~~~v 234 (257)
|++|+++.+|++|+.+|||||++|++++||+.+|++++|+|||.+|+.+.++. +++ .+...+.|+++
T Consensus 162 I~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~-g~~~i~GIG~~~ip~~~~~~~iD~v~ 240 (300)
T COG0031 162 IWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGE-GPHKIEGIGAGFVPENLDLDLIDEVI 240 (300)
T ss_pred HHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCC-CCcccCCCCCCcCCcccccccCceEE
Confidence 99999888999999999999999999999999999999999999998776442 222 23345689999
Q ss_pred EeChHHHHHHHHHHHhhcCeec
Q 025113 235 LVDDGAVVHLHNYLLLHIFTLV 256 (257)
Q Consensus 235 ~v~d~e~~~a~~~l~~~~~~~v 256 (257)
.|+|+|+.+..+.|++++++++
T Consensus 241 ~V~d~~A~~~~r~La~~eGilv 262 (300)
T COG0031 241 RVSDEEAIATARRLAREEGLLV 262 (300)
T ss_pred EECHHHHHHHHHHHHHHhCeee
Confidence 9999999999999999999986
No 2
>PLN03013 cysteine synthase
Probab=100.00 E-value=5.5e-58 Score=414.12 Aligned_cols=252 Identities=58% Similarity=0.979 Sum_probs=230.0
Q ss_pred hhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHH
Q 025113 6 AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLA 85 (257)
Q Consensus 6 ~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA 85 (257)
.+++++...+++|||++++.++...+.+||+|+|++|||||||||++.+++.++.++|.+.||.++||++|+||||.|+|
T Consensus 112 ~~~~~i~~~iG~TPLv~l~~l~~~~g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA 191 (429)
T PLN03013 112 NIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLA 191 (429)
T ss_pred HHHHHHHhcCCCCCeEECcccccccCCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHH
Confidence 46788999999999999999887777899999999999999999999999999999999999977899999999999999
Q ss_pred HHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHH
Q 025113 86 FIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGP 165 (257)
Q Consensus 86 ~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 165 (257)
++|+.+|++++||||+.+++.|+++|+.+||+|+.+++..+++++.+.+++++++.++++|++||+||.|+..||.|+|+
T Consensus 192 ~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~ 271 (429)
T PLN03013 192 FIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGP 271 (429)
T ss_pred HHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997656778889999998887789999999999997789999999
Q ss_pred HHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCccc------------ceeccccCCeE
Q 025113 166 EIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGL------------FIFISYLFRSF 233 (257)
Q Consensus 166 Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~~~------------~~i~~~~~~~~ 233 (257)
||++|+++++|+||+|+||||+++|+++++|+..|+++||+|||.+++.+.++.+.+ +.+.....|++
T Consensus 272 EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~~l~~g~~~~~~i~Glg~~~ip~~~~~~~vD~v 351 (429)
T PLN03013 272 EIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEV 351 (429)
T ss_pred HHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCchhhCCCCCCcccCcccCCcCCHhHHHHhccEE
Confidence 999999778999999999999999999999999999999999999998775433322 22334567999
Q ss_pred EEeChHHHHHHHHHHHhhcCeecC
Q 025113 234 VLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 234 v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
+.|+|+|+.++++.|+++++++|.
T Consensus 352 v~VsD~ea~~a~r~La~~eGi~vG 375 (429)
T PLN03013 352 IAISSEEAIETAKQLALKEGLMVG 375 (429)
T ss_pred EEECHHHHHHHHHHHHHHcCCEEe
Confidence 999999999999999999999873
No 3
>PLN02565 cysteine synthase
Probab=100.00 E-value=2e-57 Score=402.14 Aligned_cols=251 Identities=66% Similarity=1.060 Sum_probs=225.5
Q ss_pred hhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHH
Q 025113 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF 86 (257)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~ 86 (257)
.++.++..+++|||++++.++...+.+||+|+|++|||||||||++.+++..+.+.|.+.+|.+.||++|+||||.|+|+
T Consensus 5 ~~~~~~~~ig~TPLv~l~~l~~~~~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~ 84 (322)
T PLN02565 5 IAKDVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAF 84 (322)
T ss_pred hhhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHH
Confidence 45678899999999999887666667999999999999999999999999999999998888778999999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHH
Q 025113 87 IAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPE 166 (257)
Q Consensus 87 ~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 166 (257)
+|+.+|++++||||+++++.|+++|+.+||+|+.++...+++++.+.+++++++.++++|++||+|+.|+..||.|+|+|
T Consensus 85 ~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~E 164 (322)
T PLN02565 85 MAAAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPE 164 (322)
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999875456888899999988876889999999999988999999999
Q ss_pred HHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCcccc------------eeccccCCeEE
Q 025113 167 IWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGLF------------IFISYLFRSFV 234 (257)
Q Consensus 167 i~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~~~~------------~i~~~~~~~~v 234 (257)
|++|++++||+||+|+|+||+++|++.++|+++|++|||+|||++++++.++.+.++ .+.....|+++
T Consensus 165 i~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~~~~~g~~~~~~~~glg~~~~~~~~~~~~vd~~v 244 (322)
T PLN02565 165 IWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVDLLDEVV 244 (322)
T ss_pred HHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCCcCCHhHCCEEE
Confidence 999997679999999999999999999999999999999999999988754433221 11123578899
Q ss_pred EeChHHHHHHHHHHHhhcCeecC
Q 025113 235 LVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 235 ~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
.|+|+|+.+++++|++++++++.
T Consensus 245 ~V~d~ea~~a~~~l~~~~gi~vg 267 (322)
T PLN02565 245 QVSSDEAIETAKLLALKEGLLVG 267 (322)
T ss_pred EECHHHHHHHHHHHHHHhCcEEe
Confidence 99999999999999999998873
No 4
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=1.1e-56 Score=393.61 Aligned_cols=249 Identities=39% Similarity=0.609 Sum_probs=224.3
Q ss_pred hhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHH
Q 025113 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF 86 (257)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~ 86 (257)
.++++...+++|||++++.|+...|.+||+|+|++|||||||+|++.+++.++.++|.+.+| .+||++|+||||+|+|+
T Consensus 2 ~~~~i~~~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g-~~vv~aSsGN~g~alA~ 80 (296)
T PRK11761 2 AYPTLEDTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPG-DTLIEATSGNTGIALAM 80 (296)
T ss_pred ccccHHHhcCCCceEeccccccCCCCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHH
Confidence 45788889999999999999877788999999999999999999999999999999988877 45999999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHH
Q 025113 87 IAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPE 166 (257)
Q Consensus 87 ~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 166 (257)
+|+.+|++++||||+++++.|++.++.+||+|+.++...+++++.+.+++++++. +++|++||+|+.|+..||.|+++|
T Consensus 81 ~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~~~~~t~~~E 159 (296)
T PRK11761 81 IAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEG-EGKVLDQFANPDNPLAHYETTGPE 159 (296)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhcc-CCEecCCCCChhhHHHHhhchHHH
Confidence 9999999999999999999999999999999999996456888888899988876 789999999999988899999999
Q ss_pred HHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCC--cc--cceec-cccCCeEEEeChHHH
Q 025113 167 IWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQ--RG--LFIFI-SYLFRSFVLVDDGAV 241 (257)
Q Consensus 167 i~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~--~~--~~~i~-~~~~~~~v~v~d~e~ 241 (257)
|++|+++++|+||+|+|+||+++|++.+||+++|+++||+|||.+++.+.+-. +. ...+. ....|+++.|+|+|+
T Consensus 160 i~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~~i~g~~~~~~~~~~~~~~~~~vd~~v~V~d~e~ 239 (296)
T PRK11761 160 IWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGSSIPGIRRWPEEYLPKIFDASRVDRVLDVSQQEA 239 (296)
T ss_pred HHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCCcCcCCCCCCCCcCCcccChhhCCEEEEECHHHH
Confidence 99999767999999999999999999999999999999999999987775421 11 12333 456789999999999
Q ss_pred HHHHHHHHhhcCeecC
Q 025113 242 VHLHNYLLLHIFTLVC 257 (257)
Q Consensus 242 ~~a~~~l~~~~~~~v~ 257 (257)
.+|+++|++++++++.
T Consensus 240 ~~a~~~l~~~~gi~ve 255 (296)
T PRK11761 240 ENTMRRLAREEGIFCG 255 (296)
T ss_pred HHHHHHHHHHhCceEc
Confidence 9999999999999874
No 5
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-57 Score=396.30 Aligned_cols=247 Identities=26% Similarity=0.358 Sum_probs=226.2
Q ss_pred hhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHH
Q 025113 4 NNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG 83 (257)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~a 83 (257)
+..++.+++..+.+|||.+++.|++.+|.+||+|+|++||+||||.||+++.++.+.+++.. ...||++|+||||++
T Consensus 12 i~~A~~ri~~~~~~TPL~~s~~Ls~~~g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~---~~gViaaSaGNHaQG 88 (347)
T COG1171 12 ILAAAARLKGVVNPTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEER---AAGVIAASAGNHAQG 88 (347)
T ss_pred HHHHHHHHhCcccCCCcccchhhHHhhCceEEEeeccCcccccchhhhHHHHHHhcChhhhh---cCceEEecCCcHHHH
Confidence 45678899999999999999999999999999999999999999999999999998644221 356999999999999
Q ss_pred HHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhH
Q 025113 84 LAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETT 163 (257)
Q Consensus 84 lA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (257)
+||+|+++|++++||||.+++..|++.++.|||+|++++ .+|+++.+.++++++++ |+.|++|||+|+. ++||+|+
T Consensus 89 vA~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVil~g--~~~dda~~~a~~~a~~~-G~~~i~pfD~p~v-iAGQGTi 164 (347)
T COG1171 89 VAYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHG--DNFDDAYAAAEELAEEE-GLTFVPPFDDPDV-IAGQGTI 164 (347)
T ss_pred HHHHHHHhCCCEEEEecCCCcHHHHHHHHhcCCEEEEEC--CCHHHHHHHHHHHHHHc-CCEEeCCCCCcce-eecccHH
Confidence 999999999999999999999999999999999999999 46999999999999998 9999999999998 8999999
Q ss_pred HHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----C-------------------Cc
Q 025113 164 GPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----G-------------------QR 220 (257)
Q Consensus 164 ~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~-------------------~~ 220 (257)
+.||++|+...||+||||+|+||+++|++.++|.+.|+++||||||++++++.. | .+
T Consensus 165 ~lEileq~~~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~av~~~ 244 (347)
T COG1171 165 ALEILEQLPDLPDAVFVPVGGGGLISGIATALKALSPEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRP 244 (347)
T ss_pred HHHHHHhccccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEEeeCCChHHHHHHHcCCceeecCCCCccccccccCCC
Confidence 999999996447999999999999999999999999999999999999998742 1 12
Q ss_pred c--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 221 G--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 221 ~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
+ .|++++.+.|++++|+|+||.++|+.|+++.++++.
T Consensus 245 g~~tf~i~~~~vd~~v~V~e~ei~~am~~l~~~~~iI~E 283 (347)
T COG1171 245 GDLTFEILRELVDDIVLVDEDEICAAMRDLFERTKIIAE 283 (347)
T ss_pred CHHHHHHHHHcCCcEEEECHHHHHHHHHHHHhcCCeecc
Confidence 2 378899999999999999999999999999998863
No 6
>PLN00011 cysteine synthase
Probab=100.00 E-value=6.2e-56 Score=393.42 Aligned_cols=257 Identities=67% Similarity=1.026 Sum_probs=228.4
Q ss_pred CCchhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChH
Q 025113 1 MEDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNT 80 (257)
Q Consensus 1 ~~~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~ 80 (257)
|++.--.++.+...+++|||+++++++...+.+||+|+|++|||||||||++.+++..+.++|.+.||.++||++|+|||
T Consensus 1 ~~~~~~~~~~~~~~~g~TPl~~l~~l~~~~g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~ 80 (323)
T PLN00011 1 MEDRCLIKNDVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNT 80 (323)
T ss_pred CcchhhHHhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChH
Confidence 56665667778889999999999998876667999999999999999999999999999999999998778999999999
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhH
Q 025113 81 GVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHY 160 (257)
Q Consensus 81 ~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (257)
|+|+|++|+.+|++++||||..+++.|+++++.+||+|+.++...+.+++.+.+++++++.++++|++||+|+.|+..||
T Consensus 81 g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~ 160 (323)
T PLN00011 81 GIGLACIGAARGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHY 160 (323)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCeEEeccccCCccHHHHH
Confidence 99999999999999999999999999999999999999999965445566778888888766789999999999988899
Q ss_pred hhHHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCccc------------ceeccc
Q 025113 161 ETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGL------------FIFISY 228 (257)
Q Consensus 161 ~t~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~~~------------~~i~~~ 228 (257)
.|+++||++|+.++||+||+|+|+||+++|++.++|+++|+++||||||.+++++..+.+.. +.+...
T Consensus 161 ~t~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~ 240 (323)
T PLN00011 161 RTTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQPGPHLIQGIGSGIIPFNLDLT 240 (323)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCcccChh
Confidence 99999999998668999999999999999999999999999999999999998775432221 122234
Q ss_pred cCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 229 LFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 229 ~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
..|+++.|+|+|+.+|+++|+++++++++
T Consensus 241 ~~d~~v~V~d~e~~~a~~~l~~~~Gi~~~ 269 (323)
T PLN00011 241 IVDEIIQVTGEEAIETAKLLALKEGLLVG 269 (323)
T ss_pred hCCeEEEECHHHHHHHHHHHHHhcCCeEc
Confidence 57889999999999999999999999874
No 7
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=5.1e-56 Score=398.73 Aligned_cols=251 Identities=53% Similarity=0.883 Sum_probs=227.0
Q ss_pred hhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHH
Q 025113 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF 86 (257)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~ 86 (257)
+.+++...+++|||++++.++...+++||+|+|++|||||||||++.+++.++.++|.+.||.++||++|+||||+|+|+
T Consensus 49 ~~~~v~~~ig~TPl~~l~~l~~~~g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~ 128 (368)
T PLN02556 49 IKTDASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAF 128 (368)
T ss_pred hhhhHHHhcCCCccEEccccccccCCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHHH
Confidence 45788999999999999999877888999999999999999999999999999999999999888999999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHH
Q 025113 87 IAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPE 166 (257)
Q Consensus 87 ~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 166 (257)
+|+.+|++|+||||..++..|++.|+.+||+|+.++...++...++.+++++++.++++|++||+||.|+..||.|+++|
T Consensus 129 ~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~E 208 (368)
T PLN02556 129 MAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPE 208 (368)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999864445577888888888877899999999999966799999999
Q ss_pred HHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCcccc------------eeccccCCeEE
Q 025113 167 IWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGLF------------IFISYLFRSFV 234 (257)
Q Consensus 167 i~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~~~~------------~i~~~~~~~~v 234 (257)
|++|+.+.+|+||+|+|||||++|+++++|+.+|+++||+|||.+++.+.++.+..+ .+.....|+++
T Consensus 209 I~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~~~~~g~~~~~~i~g~g~~~~p~~~~~~~~d~~v 288 (368)
T PLN02556 209 IWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVLNGGKPGPHHITGNGVGFKPDILDMDVMEKVL 288 (368)
T ss_pred HHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCccccCCCCCCeeeeeccCCCCccccchhhCCeEE
Confidence 999986689999999999999999999999999999999999999877755433222 22234678899
Q ss_pred EeChHHHHHHHHHHHhhcCeecC
Q 025113 235 LVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 235 ~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
.|+|+|+.+++++|+++++++++
T Consensus 289 ~Vsd~ea~~a~r~l~~~eGi~vg 311 (368)
T PLN02556 289 EVSSEDAVNMARELALKEGLMVG 311 (368)
T ss_pred EECHHHHHHHHHHHHHHcCCEEe
Confidence 99999999999999999999874
No 8
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=2.8e-55 Score=385.86 Aligned_cols=245 Identities=52% Similarity=0.835 Sum_probs=221.4
Q ss_pred hcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHc
Q 025113 12 TELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAAR 91 (257)
Q Consensus 12 ~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~ 91 (257)
...+++|||++++.|+...+.+||+|+|++|||||||+|++.+++..+.+.|.+.+| ++|+++|+||||+|+|++|+.+
T Consensus 2 ~~~vg~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~ 80 (299)
T TIGR01136 2 EELIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPG-DTIIEATSGNTGIALAMVAAAK 80 (299)
T ss_pred ccccCCCceEEccccCCCCCceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHc
Confidence 456899999999999988888999999999999999999999999999999987776 4589999999999999999999
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHHhhh
Q 025113 92 GYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDS 171 (257)
Q Consensus 92 g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql 171 (257)
|++|+||||+++++.|+++++.+||+|+.++++.+++++.+.+++++++.+++++++||+|+.+++.||.|+++||++|+
T Consensus 81 G~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql 160 (299)
T TIGR01136 81 GYKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDT 160 (299)
T ss_pred CCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999997656789999999998886568899999999998899999999999999
Q ss_pred CCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCc------------ccceeccccCCeEEEeChH
Q 025113 172 GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQR------------GLFIFISYLFRSFVLVDDG 239 (257)
Q Consensus 172 ~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~------------~~~~i~~~~~~~~v~v~d~ 239 (257)
+++||+||+|+|+||+++|++.+|+++.|.+|||+|||.+++++.+..+ .++.+.....|+++.|+|+
T Consensus 161 ~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~~~V~d~ 240 (299)
T TIGR01136 161 DGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPVLSGGEPGPHKIQGIGAGFIPKILDLSLIDEVITVSDE 240 (299)
T ss_pred CCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCccCChhhCCEEEEECHH
Confidence 7679999999999999999999999999999999999999987754211 1223345567899999999
Q ss_pred HHHHHHHHHHhhcCeecC
Q 025113 240 AVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 240 e~~~a~~~l~~~~~~~v~ 257 (257)
|+.+|+++|+++++++++
T Consensus 241 e~~~a~~~l~~~~gi~~e 258 (299)
T TIGR01136 241 DAIETARRLAREEGILVG 258 (299)
T ss_pred HHHHHHHHHHHHhCceEc
Confidence 999999999999999874
No 9
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=3.2e-55 Score=383.45 Aligned_cols=245 Identities=40% Similarity=0.641 Sum_probs=219.0
Q ss_pred hhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHH
Q 025113 11 VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAA 90 (257)
Q Consensus 11 i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~ 90 (257)
|...+++|||++++.++...|.+||+|+|++|||||||||++.+++.++.++|.+.+| .+||++|+||||+|+|++|+.
T Consensus 2 i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~ 80 (290)
T TIGR01138 2 IEQTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAAL 80 (290)
T ss_pred hHHhCCCCceEEccccccCCCCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCC-CEEEEECCChHHHHHHHHHHH
Confidence 4567899999999999887888999999999999999999999999999999988887 469999999999999999999
Q ss_pred cCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHHhh
Q 025113 91 RGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQD 170 (257)
Q Consensus 91 ~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q 170 (257)
+|++++||||+++++.|++.|+.+||+|+.++.+.+++++.+.+++++++. +.+|++||+|+.|+..||.|+++||++|
T Consensus 81 ~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~t~~~Ei~~q 159 (290)
T TIGR01138 81 KGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGARDLALELANRG-EGKLLDQFNNPDNPYAHYTSTGPEIWQQ 159 (290)
T ss_pred cCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC-CCCCCCccCCcccHHHHhHhHHHHHHHH
Confidence 999999999999999999999999999999997556888889999998887 4468999999999877899999999999
Q ss_pred hCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCc-----ccceeccccCCeEEEeChHHHHHHH
Q 025113 171 SGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQR-----GLFIFISYLFRSFVLVDDGAVVHLH 245 (257)
Q Consensus 171 l~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~-----~~~~i~~~~~~~~v~v~d~e~~~a~ 245 (257)
+++++|+||+|+|+||+++|++.++|+++|++|||+|||.+++.+.+... .+........|+++.|+|+|+.+++
T Consensus 160 ~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~~~g~~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~ 239 (290)
T TIGR01138 160 TGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSSIPGIRRWPTEYLPGIFDASLVDRVLDIHQRDAENTM 239 (290)
T ss_pred cCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccCCCCCCCCcCCcccChhhCcEEEEECHHHHHHHH
Confidence 97679999999999999999999999999999999999999877654111 0111223457899999999999999
Q ss_pred HHHHhhcCeecC
Q 025113 246 NYLLLHIFTLVC 257 (257)
Q Consensus 246 ~~l~~~~~~~v~ 257 (257)
++|++++++++.
T Consensus 240 ~~l~~~~gi~~g 251 (290)
T TIGR01138 240 RELAVREGIFCG 251 (290)
T ss_pred HHHHHHhCceEc
Confidence 999999999873
No 10
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=2.4e-54 Score=379.85 Aligned_cols=244 Identities=51% Similarity=0.836 Sum_probs=216.1
Q ss_pred hcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHc
Q 025113 12 TELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAAR 91 (257)
Q Consensus 12 ~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~ 91 (257)
...+++|||+++++ ....+.+||+|+|++|||||||||++.+++..+.++|.+.+| .+|+++|+||||+|+|++|+++
T Consensus 2 ~~~~g~TPl~~~~~-~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~ 79 (298)
T TIGR01139 2 SELIGNTPLVRLNR-IEGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPG-KTIVEPTSGNTGIALAMVAAAR 79 (298)
T ss_pred ccccCCCceEEccc-cCCCCceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChhHHHHHHHHHHc
Confidence 45789999999998 455678999999999999999999999999999999987776 4589999999999999999999
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCC-eEEeCCCCCCcchHhhHhhHHHHHHhh
Q 025113 92 GYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPD-GYLLRQFENPANPKIHYETTGPEIWQD 170 (257)
Q Consensus 92 g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~Ei~~q 170 (257)
|++|+||||+++++.|++.|+.+||+|+.++++.++.++.+.+++++++.++ +++++||+||.|++.||.|+++||++|
T Consensus 80 Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q 159 (298)
T TIGR01139 80 GYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRD 159 (298)
T ss_pred CCeEEEEeCCccCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999754456888889999888744 559999999999889999999999999
Q ss_pred hCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCcc------------cceeccccCCeEEEeCh
Q 025113 171 SGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG------------LFIFISYLFRSFVLVDD 238 (257)
Q Consensus 171 l~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~~------------~~~i~~~~~~~~v~v~d 238 (257)
+++.||+||+|+|+||+++|++.+|+++.+++|||+|||.+++++....+. ++.+.....|+++.|+|
T Consensus 160 ~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d 239 (298)
T TIGR01139 160 TDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVLSGGKPGPHKIQGIGAGFIPKNLNRSVIDEVITVSD 239 (298)
T ss_pred hCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCCccChhhCCEEEEECH
Confidence 976799999999999999999999999999999999999998776532211 11222345788999999
Q ss_pred HHHHHHHHHHHhhcCeecC
Q 025113 239 GAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 239 ~e~~~a~~~l~~~~~~~v~ 257 (257)
+|+.+++++|+++++++++
T Consensus 240 ~e~~~a~~~l~~~~gi~~~ 258 (298)
T TIGR01139 240 EEAIETARRLAAEEGILVG 258 (298)
T ss_pred HHHHHHHHHHHHhcCceEc
Confidence 9999999999999999874
No 11
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=2.8e-55 Score=398.51 Aligned_cols=246 Identities=24% Similarity=0.331 Sum_probs=222.3
Q ss_pred chhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHH
Q 025113 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (257)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~ 82 (257)
++..+++++...+++|||+++++|+...|.+||+|+|++|||||||+|++.+.+..+.+.+. ..+||++|+||||+
T Consensus 6 ~i~~a~~~i~~~i~~TPl~~~~~Ls~~~g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNhg~ 81 (403)
T PRK08526 6 KIYQAKQRISGFVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQK----QHGVIAASAGNHAQ 81 (403)
T ss_pred HHHHHHHHHhCcCCCCCccchHHHHHHhCCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECccHHHH
Confidence 45678899999999999999999998888899999999999999999999999998876654 35699999999999
Q ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhh
Q 025113 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (257)
Q Consensus 83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (257)
++|++|+.+|++++||||.+++..|++.++.|||+|+.++. +++++.+.+.+++++. +++|++||+||.+ +.||+|
T Consensus 82 avA~aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g~--~~~~a~~~a~~~a~~~-g~~~v~p~~~~~~-i~G~gt 157 (403)
T PRK08526 82 GVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGD--NYDEAYAFALEYAKEN-NLTFIHPFEDEEV-MAGQGT 157 (403)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEeeCCCCCHHH-HhhhHH
Confidence 99999999999999999999999999999999999999984 6999999999998886 7899999999987 899999
Q ss_pred HHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CC------------------c
Q 025113 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQ------------------R 220 (257)
Q Consensus 163 ~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~~------------------~ 220 (257)
+|.||++|++ ++|+||+|+|+||+++|++.++|..+|+++||||||++++++.. +. +
T Consensus 158 ia~EI~eq~~-~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~~~~~~s~~~g~~~~~~~~~tiadgiav~~~ 236 (403)
T PRK08526 158 IALEMLDEIS-DLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKIINSKSVRTIADGIAVRDA 236 (403)
T ss_pred HHHHHHHhcC-CCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCCChHHHHHHcCCcccCCCCCceeccccCCCC
Confidence 9999999994 79999999999999999999999999999999999999987621 10 1
Q ss_pred c--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 221 G--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 221 ~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
+ .+++.+.+.|++++|+|+|+.+|+++|+++++++++
T Consensus 237 ~~~~~~~~~~~vd~~v~V~d~ei~~A~~~l~~~~gi~ve 275 (403)
T PRK08526 237 SPINLAIILECVDDFVQVDDEEIANAILFLLEKQKIVVE 275 (403)
T ss_pred CHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEee
Confidence 1 134445788999999999999999999999999874
No 12
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=1.5e-54 Score=384.69 Aligned_cols=246 Identities=22% Similarity=0.304 Sum_probs=220.9
Q ss_pred chhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHH
Q 025113 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (257)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~ 82 (257)
++..++++|...+++|||+++++|+...|.+||+|+|++|||||||+|++.+++.++.+.+. ..+||++|+||||+
T Consensus 5 ~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~----~~gvv~aSsGN~g~ 80 (322)
T PRK07476 5 DIYRARRRIAGRVRRTPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQER----ARGVVTASTGNHGR 80 (322)
T ss_pred HHHHHHHHHhCCCCCCCceechhhHHhhCCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhh----CCeEEEECCChHHH
Confidence 45678999999999999999999988888899999999999999999999999999998876 23599999999999
Q ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhh
Q 025113 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (257)
Q Consensus 83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (257)
|+|++|+.+|++|+||||+++++.|++.|+.+||+|+.++. +++++.+.+++++++. +++|++|++||.+ +.|++|
T Consensus 81 alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-~~g~~t 156 (322)
T PRK07476 81 ALAYAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGR--SQDDAQAEVERLVREE-GLTMVPPFDDPRI-IAGQGT 156 (322)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcce-eechhH
Confidence 99999999999999999999999999999999999999995 4888999999998876 7899999999998 789999
Q ss_pred HHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CC-------------------
Q 025113 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQ------------------- 219 (257)
Q Consensus 163 ~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~~------------------- 219 (257)
+++||++|++ ++|+||+|+|+||+++|++.+||.+.|+++||+|||.+++++.. +.
T Consensus 157 ~~~Ei~~Q~~-~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~~~~~~~s~~~g~~~~~~~~~t~a~~l~~~~~ 235 (322)
T PRK07476 157 IGLEILEALP-DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMERGAAMHASLAAGRPVQVEEVPTLADSLGGGIG 235 (322)
T ss_pred HHHHHHHhCc-CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCceeCCCCCCcccccccccc
Confidence 9999999994 79999999999999999999999999999999999998765421 00
Q ss_pred -cc--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 220 -RG--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 220 -~~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
+. ++.+.+.+.|+++.|+|+|+.+++++|+++++++++
T Consensus 236 ~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~ve 276 (322)
T PRK07476 236 LDNRYTFAMCRALLDDVVLLDEAEIAAGIRHAYREERLVVE 276 (322)
T ss_pred CCcHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCceEe
Confidence 11 123455678999999999999999999999998874
No 13
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=1.6e-53 Score=379.53 Aligned_cols=251 Identities=41% Similarity=0.652 Sum_probs=215.0
Q ss_pred hhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHH
Q 025113 6 AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLA 85 (257)
Q Consensus 6 ~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA 85 (257)
..++.++..+++|||++++++++..|.+||+|+|++|||||||+|++.+++..+.+.|.+.+| .+|+++|+||||+|+|
T Consensus 2 ~~~~~~~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g-~~vv~aSsGN~g~alA 80 (330)
T PRK10717 2 KIFEDVSDTIGNTPLIRLNRASEATGCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPG-GTIVEGTAGNTGIGLA 80 (330)
T ss_pred chhhhHHHHhCCCceEEccccCCCCCCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHH
Confidence 357788999999999999999988888999999999999999999999999999999988877 4599999999999999
Q ss_pred HHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCC-----C-HHHHHHHHHHHHHhC-CCeEEeCCCCCCcchHh
Q 025113 86 FIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL-----R-FEEILEKGEEILKKT-PDGYLLRQFENPANPKI 158 (257)
Q Consensus 86 ~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~-----~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 158 (257)
++|+.+|++|+||||..+++.|+++++.+||+|+.+++.. + .+.+.+.++++.++. .+++|++||+||.++..
T Consensus 81 ~~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (330)
T PRK10717 81 LVAAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREA 160 (330)
T ss_pred HHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHH
Confidence 9999999999999999999999999999999999999631 1 223344455554443 27899999999998778
Q ss_pred hHhhHHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC---CC---cc-----------
Q 025113 159 HYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG---GQ---RG----------- 221 (257)
Q Consensus 159 g~~t~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~---~~---~~----------- 221 (257)
||.|+++||++|+++++|+||+|+|+||+++|++.+||++.|+++||+|||.+++.... +. .+
T Consensus 161 g~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~~~~~~~~~g~~~~~~~~~~~gl~~~~ 240 (330)
T PRK10717 161 HYETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALYSYYKTGELKAEGSSITEGIGQGR 240 (330)
T ss_pred HHHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccccCCcCCCCCcccCcCCCCc
Confidence 99999999999997679999999999999999999999999999999999998743211 00 00
Q ss_pred -cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 222 -LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 222 -~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
+..+.....++++.|+|+|+.+++++|+++++++++
T Consensus 241 ~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~ve 277 (330)
T PRK10717 241 ITANLEGAPIDDAIRIPDEEALSTAYRLLEEEGLCLG 277 (330)
T ss_pred CCcccChhhCCEEEEECHHHHHHHHHHHHHhcCCeEe
Confidence 112233457889999999999999999999999874
No 14
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=2.7e-54 Score=381.85 Aligned_cols=246 Identities=22% Similarity=0.300 Sum_probs=219.6
Q ss_pred chhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHH
Q 025113 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (257)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~ 82 (257)
+++.+++++...+++|||+++++|+...|.+||+|+|++|||||||||++.+++.++.+... ..+|+++|+||||+
T Consensus 5 ~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~ 80 (317)
T TIGR02991 5 DIERAAARISGRVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQR----AAGVVAASTGNHGR 80 (317)
T ss_pred HHHHHHHHHhCcCCCCCceechhhHHhhCCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhcc----CCeEEEECCCHHHH
Confidence 56778999999999999999999988788899999999999999999999999998764322 24699999999999
Q ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhh
Q 025113 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (257)
Q Consensus 83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (257)
|+|++|+.+|++++||||+.+++.|++.++.+||+|+.++. +++++.+.+++++++. +++|++||+||++ +.||+|
T Consensus 81 alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-~~g~~t 156 (317)
T TIGR02991 81 ALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGR--SQDDAQEEVERLVADR-GLTMLPPFDHPDI-VAGQGT 156 (317)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeeCCCCChHH-HhhHHH
Confidence 99999999999999999999999999999999999999995 5888888999998876 8899999999998 789999
Q ss_pred HHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CC-------------------
Q 025113 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQ------------------- 219 (257)
Q Consensus 163 ~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~~------------------- 219 (257)
+++||++|++ ++|+||+|+|+||+++|++++||++.|+++||+|||++++++.. +.
T Consensus 157 ~a~Ei~~q~~-~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~~l~~g~~ 235 (317)
T TIGR02991 157 LGLEVVEQMP-DLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSMERGAAMKASLQAGRPVLVAELPTLADSLGGGIG 235 (317)
T ss_pred HHHHHHHhCC-CCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCcccCCCCCChhhhhhhccC
Confidence 9999999994 68999999999999999999999999999999999998766531 10
Q ss_pred -cc--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 220 -RG--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 220 -~~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
++ ++.+.+.+.|+++.|+|+|+.+++++|+++++++|+
T Consensus 236 ~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~g~~ve 276 (317)
T TIGR02991 236 LDNRVTFAMCKALLDEIVLVSEAEIAAGIRHAYAEEREIVE 276 (317)
T ss_pred CCCHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCcEEc
Confidence 01 134456778999999999999999999999999875
No 15
>PLN02970 serine racemase
Probab=100.00 E-value=3.2e-54 Score=383.23 Aligned_cols=245 Identities=19% Similarity=0.244 Sum_probs=218.3
Q ss_pred hhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHH
Q 025113 4 NNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG 83 (257)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~a 83 (257)
+..+++++...+++|||+++++|+...|.+||+|+|++|||||||||++.+++.++.+++. .++||++|+||||.|
T Consensus 14 i~~a~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~----~~~vv~aSsGN~g~a 89 (328)
T PLN02970 14 IREARKRIAPFIHRTPVLTSSSLDALAGRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQA----EKGVVTHSSGNHAAA 89 (328)
T ss_pred HHHHHHHHhCcCCCCCeeechhhHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhc----CCeEEEECCcHHHHH
Confidence 4556788999999999999999988778899999999999999999999999999876554 356999999999999
Q ss_pred HHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhH
Q 025113 84 LAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETT 163 (257)
Q Consensus 84 lA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (257)
+|++|+.+|++|+||||+++++.|++.|+.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+ ..||+|+
T Consensus 90 lA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~la~~~-g~~~~~~~~n~~~-~~g~~t~ 165 (328)
T PLN02970 90 LALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEP--TVESREAVAARVQQET-GAVLIHPYNDGRV-ISGQGTI 165 (328)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcch-hhehHHH
Confidence 9999999999999999999999999999999999999995 5888888999998874 8999999999987 6799999
Q ss_pred HHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CC----c-------------c-
Q 025113 164 GPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQ----R-------------G- 221 (257)
Q Consensus 164 ~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~~----~-------------~- 221 (257)
++||++|++ .||+||+|+|+||+++|++.+||+++|+++||+|||.+++++.. +. + +
T Consensus 166 g~Ei~~ql~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~~~~~~~s~~~g~~~~~~~~~tia~gl~~~~~~ 244 (328)
T PLN02970 166 ALEFLEQVP-ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKGADDAAQSKAAGEIITLPVTNTIADGLRASLGD 244 (328)
T ss_pred HHHHHHhcc-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECCCcHHHHHHHcCCceeCCCCCCccccccCCcCH
Confidence 999999995 79999999999999999999999999999999999999876532 11 0 0
Q ss_pred -cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 222 -LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 222 -~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
.++..+...|+++.|+|+|+.+++++|+++++++++
T Consensus 245 ~~~~~~~~~~d~~v~V~d~e~~~a~~~la~~~gi~ve 281 (328)
T PLN02970 245 LTWPVVRDLVDDVITVDDKEIIEAMKLCYERLKVVVE 281 (328)
T ss_pred HHHHHHHhhCCEEEEECHHHHHHHHHHHHHhcCcEEe
Confidence 123445678999999999999999999999999874
No 16
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=3.7e-54 Score=399.75 Aligned_cols=242 Identities=25% Similarity=0.362 Sum_probs=218.3
Q ss_pred hHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHH
Q 025113 8 KRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI 87 (257)
Q Consensus 8 ~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~ 87 (257)
..+|...+++|||++++.|++..|.+||+|+|++|||||||+|++.+++..+.+... ..+||++|+||||+++|++
T Consensus 28 ~~~i~~~v~~TPL~~~~~Ls~~~g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~----~~GVV~aSaGNha~gvA~a 103 (521)
T PRK12483 28 AARVYDVARETPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQL----ARGVITASAGNHAQGVALA 103 (521)
T ss_pred HHHHhhhcCCCCeeEchhhhHhhCCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHh----cCcEEEECCCHHHHHHHHH
Confidence 347778999999999999998889999999999999999999999999998764432 2459999999999999999
Q ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHH
Q 025113 88 AAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEI 167 (257)
Q Consensus 88 a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei 167 (257)
|+.+|++++||||.+++..|++.++.+||+|+.++. +++++.+.+++++++. +++|++||+||.+ +.|++|+|+||
T Consensus 104 A~~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil~g~--~~d~a~~~A~~la~e~-g~~~v~pfdd~~v-iaGqgTig~EI 179 (521)
T PRK12483 104 AARLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGE--SFPDALAHALKLAEEE-GLTFVPPFDDPDV-IAGQGTVAMEI 179 (521)
T ss_pred HHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCeeeCCCCChHH-HHHHHHHHHHH
Confidence 999999999999999999999999999999999984 6999999999999887 7899999999998 88999999999
Q ss_pred HhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CC------------------cc--cc
Q 025113 168 WQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQ------------------RG--LF 223 (257)
Q Consensus 168 ~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~~------------------~~--~~ 223 (257)
++|++++||+||+|+|+||+++|++.++|.+.|+++||||||++++++.. +. ++ .+
T Consensus 180 ~eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a~~~~~sl~~g~~~~~~~~~t~adGiav~~~g~~~~ 259 (521)
T PRK12483 180 LRQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFADGVAVAQIGEHTF 259 (521)
T ss_pred HHHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCCchhhHHHhcCCcccCCCCCceeceeccCCCCHHHH
Confidence 99996569999999999999999999999999999999999999887642 11 11 24
Q ss_pred eeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 224 IFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 224 ~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
++++.+.|++++|+|+|+.+|++.|+++++++++
T Consensus 260 ~~~~~~vd~vv~Vse~ei~~ai~~l~~~~~i~vE 293 (521)
T PRK12483 260 ELCRHYVDEVVTVSTDELCAAIKDIYDDTRSITE 293 (521)
T ss_pred HHHHHhCCEEEEECHHHHHHHHHHHHHhCCcEEe
Confidence 5567789999999999999999999999999874
No 17
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=2.7e-54 Score=393.64 Aligned_cols=246 Identities=24% Similarity=0.312 Sum_probs=221.2
Q ss_pred chhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHH
Q 025113 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (257)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~ 82 (257)
++..+++++...+++|||++++.|+...|.+||+|+|++|||||||+|++.+++..+.+.+. ..+||++|+||||+
T Consensus 11 ~i~~a~~~~~~~i~~TPl~~~~~ls~~~g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~~----~~gvv~aSsGN~g~ 86 (406)
T PRK06382 11 DILYAKSYLEGYLNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDEL----RNGVITASAGNHAQ 86 (406)
T ss_pred HHHHHHHHHhCcCCCCCeeEhhhhHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHhcchhcc----CCeEEEECCCHHHH
Confidence 34567899999999999999999988888899999999999999999999999998876553 24599999999999
Q ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhh
Q 025113 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (257)
Q Consensus 83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (257)
|+|++|+.+|++++||||+++++.|++.++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+ +.|++|
T Consensus 87 a~A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~--~~~~a~~~a~~la~~~-~~~~v~~~~~~~~-i~g~~t 162 (406)
T PRK06382 87 GVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGR--DYDEAHRYADKIAMDE-NRTFIEAFNDRWV-ISGQGT 162 (406)
T ss_pred HHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCccCChHH-HHHHHH
Confidence 99999999999999999999999999999999999999985 5899999999998886 8899999999988 789999
Q ss_pred HHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CC------------------Cc
Q 025113 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN----GG------------------QR 220 (257)
Q Consensus 163 ~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~----~~------------------~~ 220 (257)
+++||++|++ .||+||+|+|+||+++|++.++|.+.|+++||||||.+++++. .+ .|
T Consensus 163 ~~~Ei~eq~~-~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~ 241 (406)
T PRK06382 163 IGLEIMEDLP-DLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSDSMKASLREGKIVAHTSGVSICDGISVKYP 241 (406)
T ss_pred HHHHHHHhcC-CCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCccccccCCCc
Confidence 9999999994 7999999999999999999999999999999999999998752 11 01
Q ss_pred c--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 221 G--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 221 ~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
+ ++.+.+.+.|+++.|+|+|+.+|+++|+++++++++
T Consensus 242 ~~~~~~~~~~~~d~~v~V~d~ei~~a~~~l~~~~gi~~e 280 (406)
T PRK06382 242 GDLTFDIAKNYVDDIVTVTEESVSKAIYKLFEREKIVAE 280 (406)
T ss_pred cHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHHcCceec
Confidence 1 234556789999999999999999999999999874
No 18
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=3.5e-54 Score=393.41 Aligned_cols=246 Identities=26% Similarity=0.406 Sum_probs=222.1
Q ss_pred chhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHH
Q 025113 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (257)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~ 82 (257)
++..+++++...+++|||+++++|+...|.+||+|+|++|||||||+|++.+++.++.+++. ..+||++|+||||+
T Consensus 8 ~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~ 83 (404)
T PRK08198 8 DIEEARERLKGVVRRTPLEYSRTLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEER----ARGVVAASAGNHAQ 83 (404)
T ss_pred HHHHHHHHHhccCCCCCceehhhHHHHhCCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECCCHHHH
Confidence 44568899999999999999999998888899999999999999999999999999886554 46799999999999
Q ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhh
Q 025113 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (257)
Q Consensus 83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (257)
++|++|+.+|++++||||++++..|+++++.+||+|+.++ .+++++.+.+++++++. +++|++||+||.+ +.||+|
T Consensus 84 alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~--~~~~~~~~~a~~~~~~~-g~~~~~~~~~~~~-~~g~~t 159 (404)
T PRK08198 84 GVAYAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHG--DVYDEALAKAQELAEET-GATFVHPFDDPDV-IAGQGT 159 (404)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEEC--CCHHHHHHHHHHHHHhc-CCEecCCCCCccH-HHHHHH
Confidence 9999999999999999999999999999999999999998 45999999999998886 8899999999988 789999
Q ss_pred HHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CC------------------c
Q 025113 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQ------------------R 220 (257)
Q Consensus 163 ~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~~------------------~ 220 (257)
+|+||++|+ +++|+||+|+|+||+++|++.+||+++|+++||||||.+++++.. +. +
T Consensus 160 ~a~EI~~q~-~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~g~~v~~~ 238 (404)
T PRK08198 160 IGLEILEDL-PDVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAMPESLAAGRPVELESVDTIADGIAVKRP 238 (404)
T ss_pred HHHHHHHhC-CCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCChHHHHHHHcCCCEecCCCCccccccccCCc
Confidence 999999999 479999999999999999999999999999999999999987631 11 1
Q ss_pred c--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 221 G--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 221 ~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
+ ++.+.+.+.|+++.|+|+|+.+|+++|+++++++++
T Consensus 239 ~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~g~~~e 277 (404)
T PRK08198 239 GDLTFEIIRELVDDVVTVSDEEIARAILLLLERAKLVVE 277 (404)
T ss_pred CHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEEe
Confidence 1 123456788999999999999999999999998864
No 19
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=4.1e-54 Score=382.61 Aligned_cols=245 Identities=25% Similarity=0.373 Sum_probs=218.0
Q ss_pred hhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHH
Q 025113 4 NNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG 83 (257)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~a 83 (257)
+..+++++...+++|||++++.|++..+.+||+|+|++|||||||||++.+++.++.+... ..+|+++|+||||.|
T Consensus 14 i~~a~~~i~~~i~~TPlv~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~~SsGN~g~a 89 (333)
T PRK08638 14 IIEAKQRLAGRIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEK----RKGVVACSAGNHAQG 89 (333)
T ss_pred HHHHHHHhhCcCcCCCceechhhHHhhCCeEEEEeccCCccCCcHHHHHHHHHHhccHHhc----CCeEEEeCCcHHHHH
Confidence 4567899999999999999999988788899999999999999999999999998765332 246999999999999
Q ss_pred HHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhH
Q 025113 84 LAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETT 163 (257)
Q Consensus 84 lA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (257)
+|++|+.+|++|+||||++.++.|+++++.+||+|+.+++ +++++.+.+++++++. +++|++||+||.+ ..||.|+
T Consensus 90 lA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~a~~~-g~~~~~~~~~~~~-~~g~~t~ 165 (333)
T PRK08638 90 VALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGD--NFNDTIAKVEEIVEEE-GRTFIPPYDDPKV-IAGQGTI 165 (333)
T ss_pred HHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEEcCcCCCcch-hccccHH
Confidence 9999999999999999999999999999999999999984 5899999999998887 7899999999998 7899999
Q ss_pred HHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCC------------------cc
Q 025113 164 GPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN----GGQ------------------RG 221 (257)
Q Consensus 164 ~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~----~~~------------------~~ 221 (257)
++||++|+ +++|+||+|+|+||+++|++.+||++.|+++||+|||.+++++. .+. |.
T Consensus 166 a~Ei~~q~-~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g~~~~~~s~~~g~~~~~~~~~ti~~gl~~~~p~ 244 (333)
T PRK08638 166 GLEILEDL-WDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSENVHGMAASFYAGEITTHRTTGTLADGCDVSRPG 244 (333)
T ss_pred HHHHHhhc-CCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHCCCcccCCCCCCeeccccCCCcc
Confidence 99999999 57999999999999999999999999999999999999986543 111 11
Q ss_pred c--ceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 222 L--FIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 222 ~--~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
. +++.+.+.|+++.|+|+|+.+++++|+++++++++
T Consensus 245 ~~~~~~~~~~~d~~v~Vsd~ea~~a~~~l~~~~gi~~e 282 (333)
T PRK08638 245 NLTYEIVRELVDDIVLVSEDEIRNAMKDLIQRNKVVTE 282 (333)
T ss_pred HHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeec
Confidence 1 12335678999999999999999999999998764
No 20
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=8.4e-54 Score=379.87 Aligned_cols=246 Identities=21% Similarity=0.226 Sum_probs=218.7
Q ss_pred chhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHH
Q 025113 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (257)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~ 82 (257)
++..++++++..+++|||++++.|++.+|.+||+|+|++|||||||+|++.+++.++.+++... ..|+++|+||||+
T Consensus 7 ~i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~~---~~vv~aSsGN~g~ 83 (322)
T PRK06110 7 ELEAAAAVVYAAMPPTPQYRWPLLAERLGCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRV---RGVISATRGNHGQ 83 (322)
T ss_pred HHHHHHHHHhCcCcCCCcccchhHHHHhCCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCCC---ceEEEECCCHHHH
Confidence 3466789999999999999999999888889999999999999999999999999998876432 4589999999999
Q ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhh
Q 025113 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (257)
Q Consensus 83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (257)
|+|++|+++|++++||||.++++.|+++++.+||+|+.++ .+++++.+.+++++++. +++|++|| ||.+ +.||.|
T Consensus 84 alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~--~~~~~~~~~a~~~~~~~-~~~~~~~~-~~~~-~~G~~t 158 (322)
T PRK06110 84 SVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAELIEHG--EDFQAAREEAARLAAER-GLHMVPSF-HPDL-VRGVAT 158 (322)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEEC--CCHHHHHHHHHHHHHhc-CCEEcCCC-CChH-Hhccch
Confidence 9999999999999999999999999999999999999997 45899999999998886 78999998 5666 689999
Q ss_pred HHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----C------------------Cc
Q 025113 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----G------------------QR 220 (257)
Q Consensus 163 ~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~------------------~~ 220 (257)
+++||++|++ ++|+||+|+|+||+++|++.++++.+|++|||+|||.+++++.. + .+
T Consensus 159 ~~~Ei~~q~~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~ 237 (322)
T PRK06110 159 YALELFRAVP-DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAHAPAYALSFEAGRVVTTPVATTLADGMACRTP 237 (322)
T ss_pred HHHHHHhhCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCCChHHHHHHHcCCcccCCCCCCcccccCCCCc
Confidence 9999999995 79999999999999999999999999999999999999876531 1 01
Q ss_pred c--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 221 G--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 221 ~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
. .+++++.+.|+++.|+|+|+.+++++|+++++++++
T Consensus 238 ~~~~~~~~~~~~d~~~~Vsd~e~~~a~~~l~~~~gi~~e 276 (322)
T PRK06110 238 DPEALEVIRAGADRIVRVTDDEVAAAMRAYFTDTHNVAE 276 (322)
T ss_pred cHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEe
Confidence 1 134456789999999999999999999999998864
No 21
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=1.4e-52 Score=367.46 Aligned_cols=241 Identities=51% Similarity=0.792 Sum_probs=213.9
Q ss_pred CCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcE
Q 025113 16 GNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNL 95 (257)
Q Consensus 16 ~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~ 95 (257)
|+|||++++.|+...|.+||+|+|++|||||||+|++.+++..+.++|.+++| .+|+++|+||||+|+|++|+++|++|
T Consensus 1 g~TPl~~~~~l~~~~g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~-~~vv~~SsGN~g~alA~~a~~~G~~~ 79 (291)
T cd01561 1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPG-TTIIEPTSGNTGIGLAMVAAAKGYRF 79 (291)
T ss_pred CCCCEEEccccCCCCCCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHcCCeE
Confidence 68999999999988889999999999999999999999999999999887665 45999999999999999999999999
Q ss_pred EEEeCCCCCHHHHHHHHHCCCEEEEECCCC--CHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHHhhhCC
Q 025113 96 IIVMPSTCSMERRIVLRALGAEIILADSAL--RFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGG 173 (257)
Q Consensus 96 ~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~ 173 (257)
+||||..+++.|+++++.+||+|+.++... +.+++.+.+++++++.++++|++||+||.++..|++|+++||++|+++
T Consensus 80 ~i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~~ 159 (291)
T cd01561 80 IIVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDG 159 (291)
T ss_pred EEEECCCCCHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999642 347888889998887668999999999999554556999999999966
Q ss_pred CCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCc------------ccceeccccCCeEEEeChHHH
Q 025113 174 KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQR------------GLFIFISYLFRSFVLVDDGAV 241 (257)
Q Consensus 174 ~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~------------~~~~i~~~~~~~~v~v~d~e~ 241 (257)
.||+||+|+|+||+++|++.+|+.+.|+++||+|||.+++++.+... .++.+...+.++++.|+|+|+
T Consensus 160 ~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~V~d~e~ 239 (291)
T cd01561 160 KVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLFSGGPPGPHKIEGIGAGFIPENLDRSLIDEVVRVSDEEA 239 (291)
T ss_pred CCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCCcccCCCCCCCCcCCCCCCCCCCCccCchhCceeEEECHHHH
Confidence 79999999999999999999999999999999999999877732111 122344456889999999999
Q ss_pred HHHHHHHHhhcCeecC
Q 025113 242 VHLHNYLLLHIFTLVC 257 (257)
Q Consensus 242 ~~a~~~l~~~~~~~v~ 257 (257)
.+|+++|+++++++++
T Consensus 240 ~~a~~~l~~~~gi~~e 255 (291)
T cd01561 240 FAMARRLAREEGLLVG 255 (291)
T ss_pred HHHHHHHHHHhCeeEc
Confidence 9999999999999874
No 22
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=2.7e-53 Score=376.63 Aligned_cols=246 Identities=23% Similarity=0.324 Sum_probs=218.9
Q ss_pred chhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHH
Q 025113 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (257)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~ 82 (257)
++..+++++...+++|||+++++++...|.+||+|+|++|||||||||++.+++.++.+.+. ..+||++|+||||+
T Consensus 10 ~i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~ 85 (321)
T PRK07048 10 DVAAAAARLAGVAHRTPVLTSRTADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQR----RAGVVTFSSGNHAQ 85 (321)
T ss_pred HHHHHHHHhhCCCCCCCCccchhhHHhcCCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhc----CCcEEEeCCCHHHH
Confidence 45678899999999999999999887778899999999999999999999999999875432 35699999999999
Q ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhh
Q 025113 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (257)
Q Consensus 83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (257)
|+|++|+.+|+++++|||.++++.|+++++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+ +.|++|
T Consensus 86 alA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~~--~~~~~~~~a~~l~~~~-g~~~~~~~~~~~~-~~g~~t 161 (321)
T PRK07048 86 AIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDR--YTEDREEIGRRLAEER-GLTLIPPYDHPHV-IAGQGT 161 (321)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEECCCCCcch-hhccch
Confidence 99999999999999999999999999999999999999995 4788888899998886 7899999999988 789999
Q ss_pred HHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc-----CC-----C----------c--
Q 025113 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN-----GG-----Q----------R-- 220 (257)
Q Consensus 163 ~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~-----~~-----~----------~-- 220 (257)
+++||++|++ +||+||+|+|+||+++|++.++|++.|+++||+|||.+++++. +. . +
T Consensus 162 ~~~EI~~q~~-~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~g~~~~~~ 240 (321)
T PRK07048 162 AAKELFEEVG-PLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEAGNDGQQSFRSGEIVHIDTPRTIADGAQTQHL 240 (321)
T ss_pred HHHHHHhhcC-CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCCChhHHHHHHcCCcccCCCCCCcccccccCCc
Confidence 9999999995 8999999999999999999999999999999999999987531 10 0 0
Q ss_pred --ccceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 221 --GLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 221 --~~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
..+++...+.|+++.|+|+|+.+++++|+++++++++
T Consensus 241 ~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~e 279 (321)
T PRK07048 241 GNYTFPIIRRLVDDIVTVSDAELVDAMRFFAERMKIVVE 279 (321)
T ss_pred cHHHHHHHHHhCCceEEECHHHHHHHHHHHHHhCCceec
Confidence 0123445678999999999999999999999999875
No 23
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=2.1e-53 Score=387.65 Aligned_cols=247 Identities=24% Similarity=0.361 Sum_probs=218.1
Q ss_pred chhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHH
Q 025113 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (257)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~ 82 (257)
++..+++++...+++|||++++.|++..|.+||+|+|++|||||||+|++.+++.++.+... ..+||++|+||||+
T Consensus 2 ~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~gvv~aSsGN~g~ 77 (409)
T TIGR02079 2 DIEAARKRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQL----AKGVVCASAGNHAQ 77 (409)
T ss_pred hHHHHHHHHhCcCCCCCccccHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHH
Confidence 45678899999999999999999998888999999999999999999999999987543322 24699999999999
Q ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEE---EEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhh
Q 025113 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI---ILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIH 159 (257)
Q Consensus 83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 159 (257)
++|++|+.+|++++||||+++++.|+..++.+||+| +.++ .+++++.+.+++++++. +++|++||+||.+ +.|
T Consensus 78 a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~vv~v~~~g--~~~~~a~~~a~~~~~~~-g~~~~~~~~~~~~-~~g 153 (409)
T TIGR02079 78 GFAYACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVG--DTFDQCAAAAREHVEDH-GGTFIPPFDDPRI-IEG 153 (409)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCCeeEEEEeC--CCHHHHHHHHHHHHHhc-CCEEeCCCCCHhH-hhh
Confidence 999999999999999999999999999999999974 3444 46999999999998886 7899999999988 789
Q ss_pred HhhHHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CC----------------
Q 025113 160 YETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQ---------------- 219 (257)
Q Consensus 160 ~~t~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~~---------------- 219 (257)
++|+++||++|++++||+||+|+|+||+++|++.++|+++|+++||||||.+++++.. +.
T Consensus 154 ~~ti~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~g~~v 233 (409)
T TIGR02079 154 QGTVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPSMKASLEAGEVVTLDKIDNFVDGAAV 233 (409)
T ss_pred hHHHHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCceecCCCCCeeccccC
Confidence 9999999999996569999999999999999999999999999999999999987642 11
Q ss_pred --cc--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 220 --RG--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 220 --~~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
++ .+++++.+.|+++.|+|+|+.+|+++|+++++++++
T Consensus 234 ~~~g~~~~~~~~~~vd~vv~V~d~e~~~a~~~l~~~~gi~ve 275 (409)
T TIGR02079 234 KRVGDLNFKALKDVPDEVTLVPEGAVCTTILDLYNLEGIVAE 275 (409)
T ss_pred CCCcHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHhcCceec
Confidence 11 123456778999999999999999999999999874
No 24
>PLN02550 threonine dehydratase
Probab=100.00 E-value=2e-53 Score=397.15 Aligned_cols=240 Identities=23% Similarity=0.360 Sum_probs=216.8
Q ss_pred hhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHH
Q 025113 10 DVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAA 89 (257)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~ 89 (257)
++...+++|||++++.|+..+|.+||+|+|++|||||||+|++.+.+.++.+... ..+||++|+||||+++|++|+
T Consensus 102 ~v~~~i~~TPL~~s~~LS~~~g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~~----~~GVV~aSaGNhAqgvA~aA~ 177 (591)
T PLN02550 102 KVYDVAIESPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQL----DKGVICSSAGNHAQGVALSAQ 177 (591)
T ss_pred hhhccccCChhhhhHHhhHhhCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhcC----CCCEEEECCCHHHHHHHHHHH
Confidence 5668899999999999998889999999999999999999999999998865432 245999999999999999999
Q ss_pred HcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHHh
Q 025113 90 ARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQ 169 (257)
Q Consensus 90 ~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ 169 (257)
++|++++||||.+++..|++.++.+||+|+.++ .+++++.+.+++++++. +++|++||+||.+ ++|++|+|+||++
T Consensus 178 ~lGika~IvmP~~tp~~Kv~~~r~~GAeVvl~g--~~~dea~~~A~~la~e~-g~~fi~pfddp~v-iaGqgTig~EI~e 253 (591)
T PLN02550 178 RLGCDAVIAMPVTTPEIKWQSVERLGATVVLVG--DSYDEAQAYAKQRALEE-GRTFIPPFDHPDV-IAGQGTVGMEIVR 253 (591)
T ss_pred HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeC--CCHHHHHHHHHHHHHhc-CCEEECCCCChHH-HHHHHHHHHHHHH
Confidence 999999999999999999999999999999998 45999999999998886 7899999999998 7899999999999
Q ss_pred hhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CC------------------c--cccee
Q 025113 170 DSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQ------------------R--GLFIF 225 (257)
Q Consensus 170 ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~~------------------~--~~~~i 225 (257)
|+++.+|+||+|+|+||+++|++.++|+++|++|||||||.+++++.. +. + ..+++
T Consensus 254 Ql~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~~~s~~~G~~v~~~~~~tiAdGiav~~~G~~t~~i 333 (591)
T PLN02550 254 QHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAMALSLHHGERVMLDQVGGFADGVAVKEVGEETFRL 333 (591)
T ss_pred HcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCccccCCCCCccceeecCCCCHHHHHH
Confidence 996569999999999999999999999999999999999999887631 11 1 12456
Q ss_pred ccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 226 ISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 226 ~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
++.+.|++++|+|+||.+|++.|+++++++++
T Consensus 334 ~~~~vD~vV~Vsd~eI~~Ai~~l~e~~givvE 365 (591)
T PLN02550 334 CRELVDGVVLVSRDAICASIKDMFEEKRSILE 365 (591)
T ss_pred HHhhCCEEEEECHHHHHHHHHHHHHHCCCEEe
Confidence 68899999999999999999999999999874
No 25
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=2.1e-53 Score=384.19 Aligned_cols=240 Identities=19% Similarity=0.240 Sum_probs=210.4
Q ss_pred cCCCCceecccccCCCC--------ceEEEEeCCCCC-CCChhhHHHHHHHHH-----HHHcCCCCCCc-----------
Q 025113 15 IGNTPMVYLNNVVDGCV--------ARIAAKLETMEP-CSSVKDRIAYSMIKD-----AEDKGLITPGK----------- 69 (257)
Q Consensus 15 ~~~TPl~~~~~l~~~~~--------~~l~~K~E~~~p-tGS~K~R~a~~~~~~-----a~~~g~~~~g~----------- 69 (257)
+++|||++++.|+...| .+||+|+|++|| |||||||++.+++.. +.+.|.+.||.
T Consensus 50 ~~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~ 129 (404)
T cd06447 50 IIESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFR 129 (404)
T ss_pred ccCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhhh
Confidence 99999999999886543 699999999999 999999999999864 78889988875
Q ss_pred -----eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCe
Q 025113 70 -----TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDG 144 (257)
Q Consensus 70 -----~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (257)
.+||++|+||||+|+|++|+.+|++++||||.++++.|++.|+.+||+|+.+++ +++++.+.+++++++.+++
T Consensus 130 ~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~v~~--~~~~a~~~a~~la~~~~~~ 207 (404)
T cd06447 130 KLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVEYET--DYSKAVEEGRKQAAADPMC 207 (404)
T ss_pred hcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHHCCCe
Confidence 479999999999999999999999999999999999999999999999999984 5899999999999887678
Q ss_pred EEeCCCCCCcchHhhHhhHHHHHHhhhCC---C-----CCEEEEecCchhHHHHHHHHHHhc-CCCcEEEEEeCCCCccc
Q 025113 145 YLLRQFENPANPKIHYETTGPEIWQDSGG---K-----VDAFISGIGTGGTVTGAGRFLKEN-NPDIKVYGVEPSESAVL 215 (257)
Q Consensus 145 ~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~---~-----~d~iv~pvG~Gg~~aGi~~~~k~~-~~~~~vigv~~~~~~~~ 215 (257)
+|++|++++. .++||+|+|+||++|+++ + ||+||+|+|+||+++|++++||++ .|+++||+|||.+++++
T Consensus 208 ~~v~~~n~~~-~iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~ap~~ 286 (404)
T cd06447 208 YFVDDENSRD-LFLGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHSPCM 286 (404)
T ss_pred EeCCCCCchh-HHhhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEEccCCChHH
Confidence 8999965554 489999999999999952 3 458999999999999999999997 78999999999998765
Q ss_pred cC----CC------------------------c--ccceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 216 NG----GQ------------------------R--GLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 216 ~~----~~------------------------~--~~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
.. +. + ..+++++.+.|++++|+|+|+.+++++|+++++++++
T Consensus 287 ~~s~~ag~~~~~~~~~~g~~~~TiadGl~~~~p~~~~~~~~~~~vd~~v~Vsd~ei~~a~r~La~~~gi~ve 358 (404)
T cd06447 287 LLGMATGLHDKISVQDIGIDNRTAADGLAVGRPSGLVGKLMEPLLSGIYTVEDDELYRLLAMLKDSENIEVE 358 (404)
T ss_pred HHHHHcCCCccccccccCCCccchhhhhcCCCcchhHHHHHHHhCCcEEEECHHHHHHHHHHHHHHcCcEEe
Confidence 11 10 0 1234556789999999999999999999999999874
No 26
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=2e-52 Score=377.75 Aligned_cols=249 Identities=34% Similarity=0.565 Sum_probs=209.5
Q ss_pred hhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHH
Q 025113 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF 86 (257)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~ 86 (257)
.+..+...+++|||++++.|+...|.+||+|+|++|||||||||++.+++.+|.++|.+.|+. .|+++||||||.|+|+
T Consensus 43 ~~~~~~~~ig~TPLv~~~~l~~~~g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g-~VveaSSGN~g~alA~ 121 (423)
T PLN02356 43 PRNGLIDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGG-VVTEGSAGSTAISLAT 121 (423)
T ss_pred hhhhHHhhcCCCceEECcccccccCCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCCC-EEEEeCCHHHHHHHHH
Confidence 345677889999999999998888889999999999999999999999999999999887764 4788999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC-----CCCHH-HHH---HHHHHHHHh-----------------
Q 025113 87 IAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS-----ALRFE-EIL---EKGEEILKK----------------- 140 (257)
Q Consensus 87 ~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~-----~~~~~-~~~---~~~~~~~~~----------------- 140 (257)
+|+.+|++++||||+++++.|++.|+.+||+|+.+++ ..++. .+. ..+++++++
T Consensus 122 ~aa~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~ 201 (423)
T PLN02356 122 VAPAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNG 201 (423)
T ss_pred HHHHcCCcEEEEECCCCcHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhcccccccccccccc
Confidence 9999999999999999999999999999999999964 12231 111 224444433
Q ss_pred ---------------CCCeEEeCCCCCCcchHhhHhhHHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEE
Q 025113 141 ---------------TPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVY 205 (257)
Q Consensus 141 ---------------~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vi 205 (257)
.++.+|++||+|+.|+..|+..+|+||++|+++++|+||+|+||||+++|+++++|+++|+++||
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkVi 281 (423)
T PLN02356 202 CISEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKCF 281 (423)
T ss_pred ccccccccccccccCCCCcEecCccCCcchHHHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCCEEE
Confidence 14778999999999988877767999999997689999999999999999999999999999999
Q ss_pred EEeCCCCccccC-------------CC----c------------ccceeccccCCeEEEeChHHHHHHHHHHHhhcCeec
Q 025113 206 GVEPSESAVLNG-------------GQ----R------------GLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLV 256 (257)
Q Consensus 206 gv~~~~~~~~~~-------------~~----~------------~~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v 256 (257)
+|||.++..+.. +. + -++.+.....|+++.|+|+|+.+++++|+++++++|
T Consensus 282 gVep~~s~~~~~~~~~~~~~~s~~~G~~~~~~~~tia~Gig~~~~~~~~~~~~vD~~v~Vsd~ea~~a~r~L~~~~Gl~v 361 (423)
T PLN02356 282 LIDPPGSGLFNKVTRGVMYTREEAEGRRLKNPFDTITEGIGINRLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFV 361 (423)
T ss_pred EEecCCCccccccccchhhhhhhhcCCccCCCCCeecCcCcCCCCChhHhHHhCCcEEEECHHHHHHHHHHHHHHCCeeE
Confidence 999998753210 10 0 012233456899999999999999999999999987
No 27
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=2.5e-53 Score=388.74 Aligned_cols=249 Identities=24% Similarity=0.359 Sum_probs=218.0
Q ss_pred chhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHH
Q 025113 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (257)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~ 82 (257)
++..+++++...+++|||++++.|++..|.+||+|+|++|||||||+|++.+++.++.+... ..+||++|+||||+
T Consensus 11 ~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~~Vv~aSsGN~g~ 86 (420)
T PRK08639 11 DIDKAAKRLKDVVPETPLQRNDYLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLSDEEL----AAGVVCASAGNHAQ 86 (420)
T ss_pred HHHHHHHHHhCcCcCCCccchHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHH
Confidence 45568899999999999999999988888899999999999999999999999988543221 25699999999999
Q ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC-CCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHh
Q 025113 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD-SALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYE 161 (257)
Q Consensus 83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (257)
++|++|+.+|++++||||+++++.|++.++.+||+|+.+. ...+++++.+.+.+++++. +++|++||+||.+ +.|++
T Consensus 87 alA~~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~~a~~~-g~~~~~~~~~~~~-~~G~~ 164 (420)
T PRK08639 87 GVAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEYAEET-GATFIPPFDDPDV-IAGQG 164 (420)
T ss_pred HHHHHHHHcCCCEEEEECCCChHHHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHHHHHhc-CCcccCCCCChhH-hcchh
Confidence 9999999999999999999999999999999999754322 1246999999999998886 7999999999988 78999
Q ss_pred hHHHHHHhhhCCC--CCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CC----------------
Q 025113 162 TTGPEIWQDSGGK--VDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQ---------------- 219 (257)
Q Consensus 162 t~~~Ei~~ql~~~--~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~~---------------- 219 (257)
|+|+||++|+++. ||+||+|+|+||+++|++.++|++.|+++||||||.+++++.. +.
T Consensus 165 tig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~gi~v 244 (420)
T PRK08639 165 TVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAGAASMKAALEAGKPVTLEKIDKFVDGAAV 244 (420)
T ss_pred HHHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCCCcHHHHHhCCCceeCCCCCCeeccccc
Confidence 9999999999655 9999999999999999999999999999999999999887631 11
Q ss_pred --cc--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 220 --RG--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 220 --~~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
++ .+++++.+.|+++.|+|+|+.+|+++|+++++++++
T Consensus 245 ~~~g~~~~~~~~~~vd~~v~V~d~ei~~a~~~l~~~~gi~~e 286 (420)
T PRK08639 245 ARVGDLTFEILKDVVDDVVLVPEGAVCTTILELYNKEGIVAE 286 (420)
T ss_pred CCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceec
Confidence 11 234556788999999999999999999999999874
No 28
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=1.2e-52 Score=372.93 Aligned_cols=236 Identities=22% Similarity=0.275 Sum_probs=210.7
Q ss_pred chhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHH
Q 025113 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (257)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~ 82 (257)
++..++++++..+.+|||++++.+ +||+|+|++|||||||+|++.+++.++.+.+.. +.||++|+||||+
T Consensus 25 ~i~~A~~~i~~~i~~TPL~~~~~l------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~~----~~VV~aSsGN~G~ 94 (349)
T PRK08813 25 DVLAAQARLRRYLSPTPLHYAERF------GVWLKLENLQRTGSYKVRGALNALLAGLERGDE----RPVICASAGNHAQ 94 (349)
T ss_pred HHHHHHHHHhCcCCCCCeEECCCC------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCCC----CeEEEECCCHHHH
Confidence 456688999999999999999865 499999999999999999999999999998862 4599999999999
Q ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhh
Q 025113 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (257)
Q Consensus 83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (257)
|+|++|+.+|++++||||.++++.|++.++.+||+|+.+++ +|+++.+.+++++++. +++|++||+||++ ++||+|
T Consensus 95 alA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~g~--~~~~a~~~a~~la~~~-g~~~v~~~~np~~-i~G~~T 170 (349)
T PRK08813 95 GVAWSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQHGN--SYDEAYAFARELADQN-GYRFLSAFDDPDV-IAGQGT 170 (349)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEcCccCChHH-HHHHHH
Confidence 99999999999999999999999999999999999999984 5999999999999886 8999999999998 789999
Q ss_pred HHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CC-----------------Cc-
Q 025113 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN----GG-----------------QR- 220 (257)
Q Consensus 163 ~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~----~~-----------------~~- 220 (257)
+|+||++|. ||+||+|+|+||+++|++.++|+ ++++||||||++++++. +. .+
T Consensus 171 ig~EI~e~~---pD~VvvpvGgGGliaGia~~lk~--~~~rVigVqpega~~~~~s~~g~~~~~~~~~tiadgl~~~~p~ 245 (349)
T PRK08813 171 VGIELAAHA---PDVVIVPIGGGGLASGVALALKS--QGVRVVGAQVEGVDSMARAIRGDLREIAPVATLADGVKVKIPG 245 (349)
T ss_pred HHHHHHcCC---CCEEEEEeCccHHHHHHHHHHhc--CCCEEEEEEECCCchHHHHHcCCCcccCCCCceecccccCCcc
Confidence 999999873 79999999999999999999996 46999999999987642 11 01
Q ss_pred -ccceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 221 -GLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 221 -~~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
..+.+.+.+.|+++.|+|+|+.+|+++|+++++++|+
T Consensus 246 ~~~~~i~~~~vd~vv~Vsd~ei~~a~~~l~~~~gl~vE 283 (349)
T PRK08813 246 FLTRRLCSSLLDDVVIVREAELRETLVRLALEEHVIAE 283 (349)
T ss_pred hhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEE
Confidence 1134456778999999999999999999999999874
No 29
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=7.2e-53 Score=391.13 Aligned_cols=242 Identities=26% Similarity=0.368 Sum_probs=218.6
Q ss_pred hHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHH
Q 025113 8 KRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI 87 (257)
Q Consensus 8 ~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~ 87 (257)
..++...+++|||+++++|+...|.+||+|+|++|||||||+|++.+++..+.+... ..+||++|+||||+++|++
T Consensus 8 ~~~v~~~i~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNha~~vA~a 83 (499)
T TIGR01124 8 TARVYEAAQETPLQKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQK----ARGVIAASAGNHAQGVAFS 83 (499)
T ss_pred HhHhhCccCCCCeeehHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhc----CCEEEEECCCHHHHHHHHH
Confidence 347888999999999999998888899999999999999999999999998754432 3569999999999999999
Q ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHH
Q 025113 88 AAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEI 167 (257)
Q Consensus 88 a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei 167 (257)
|+.+|++++||||.+++..|++.++.+||+|+.++ .+++++.+.+++++++. +++|++||+||.+ ++|++|+|.||
T Consensus 84 a~~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g--~~~d~a~~~a~~la~~~-g~~~i~p~~~~~~-i~G~gtig~EI 159 (499)
T TIGR01124 84 AARLGLKALIVMPETTPDIKVDAVRGFGGEVVLHG--ANFDDAKAKAIELSQEK-GLTFIHPFDDPLV-IAGQGTLALEI 159 (499)
T ss_pred HHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEeC--cCHHHHHHHHHHHHHhc-CCEeeCCCCChHH-HHhhHHHHHHH
Confidence 99999999999999999999999999999999998 45999999999998886 7899999999998 89999999999
Q ss_pred HhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CC------------------c--ccc
Q 025113 168 WQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQ------------------R--GLF 223 (257)
Q Consensus 168 ~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~~------------------~--~~~ 223 (257)
++|+++++|+||+|+|+||+++|++.++|...|+++||||||.+++++.. +. + ..+
T Consensus 160 ~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~~~~~~s~~~g~~~~~~~~~t~adgiav~~~g~~~~ 239 (499)
T TIGR01124 160 LRQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDCMKQALDAGEPVDLDQVGLFADGVAVKRVGDETF 239 (499)
T ss_pred HHhCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCceeCCCCCCccCcccCCCccHHHH
Confidence 99996579999999999999999999999999999999999999887632 11 1 124
Q ss_pred eeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 224 IFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 224 ~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
++++.+.|++++|+|+|+.+|++.|+++++++++
T Consensus 240 ~~~~~~vd~vv~V~d~ei~~ai~~l~~~~gii~E 273 (499)
T TIGR01124 240 RLCQQYLDDIVTVDTDEVCAAIKDLFEDTRAVAE 273 (499)
T ss_pred HHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEEe
Confidence 5677889999999999999999999999999874
No 30
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=5.8e-53 Score=384.74 Aligned_cols=246 Identities=22% Similarity=0.299 Sum_probs=219.9
Q ss_pred chhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHH
Q 025113 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (257)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~ 82 (257)
++..+++++...+++|||++++.|+..+|.+||+|+|++|||||||||++.+++.++.+... ..+||++|+||||+
T Consensus 9 ~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~aSsGN~g~ 84 (403)
T PRK07334 9 DIRAAAARLAGQVLRTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEER----ARGVIAMSAGNHAQ 84 (403)
T ss_pred HHHHHHHHHhCCCCCCCccchHHHHHhhCCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHh----CCcEEEECCcHHHH
Confidence 45678899999999999999999988788899999999999999999999999998765432 24599999999999
Q ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhh
Q 025113 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (257)
Q Consensus 83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (257)
|+|++|+.+|++++||||..+++.|+++++.+||+|+.+++ +++++.+.+++++++. +++|++||+||.+ +.||.|
T Consensus 85 alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~--~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~-~~g~~t 160 (403)
T PRK07334 85 GVAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGE--TLDEARAHARELAEEE-GLTFVHPYDDPAV-IAGQGT 160 (403)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEecCCCCCHHH-HHhHHH
Confidence 99999999999999999999999999999999999999984 5899999999998875 8899999999998 799999
Q ss_pred HHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CC----------------cc-
Q 025113 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQ----------------RG- 221 (257)
Q Consensus 163 ~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~~----------------~~- 221 (257)
+++||++|+ +.+|+||+|+|+||+++|++.++|.+.|+++||+|||++++++.. +. ++
T Consensus 161 ~~~Ei~~q~-~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~ 239 (403)
T PRK07334 161 VALEMLEDA-PDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTELYPSMYAAIKGVALPCGGSTIAEGIAVKQPGQ 239 (403)
T ss_pred HHHHHHhcC-CCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHhCCCccCCCCCccceecCCCccH
Confidence 999999999 479999999999999999999999999999999999999887642 10 11
Q ss_pred -cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 222 -LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 222 -~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
++.+.+.+.|+++.|+|+|+.++++.|+++++++|+
T Consensus 240 ~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~v~ 276 (403)
T PRK07334 240 LTLEIVRRLVDDILLVSEADIEQAVSLLLEIEKTVVE 276 (403)
T ss_pred HHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCEEe
Confidence 123456678999999999999999999999999874
No 31
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-52 Score=371.93 Aligned_cols=246 Identities=21% Similarity=0.261 Sum_probs=218.1
Q ss_pred chhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHH
Q 025113 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (257)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~ 82 (257)
++..+++++...+++|||++++.|+...|.+||+|+|++|||||||||++.+++.++.+... ..+||++|+||||+
T Consensus 6 ~i~~a~~~~~~~i~~TPLv~~~~l~~~~g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~~----~~~vv~aSsGN~g~ 81 (317)
T PRK06815 6 AILEAHQRLRPQVRVTPLEHSPLLSQHTGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQR----QQGVITASSGNHGQ 81 (317)
T ss_pred HHHHHHHHhhCCCCCCCccccHhHHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhhc----CceEEEECCChHHH
Confidence 45678899999999999999999988788899999999999999999999999987654322 24699999999999
Q ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhh
Q 025113 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (257)
Q Consensus 83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (257)
|+|++|+.+|++|+||||..+++.|+..++.+||+|+.+++ +++++...+++++++. +++|++||+||.+ +.||+|
T Consensus 82 alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~-~~g~~t 157 (317)
T PRK06815 82 GVALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGG--DALNAELAARRAAEQQ-GKVYISPYNDPQV-IAGQGT 157 (317)
T ss_pred HHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEecCCCChhh-hcchhH
Confidence 99999999999999999999999999999999999999996 4888888899988876 8899999999987 689999
Q ss_pred HHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CC-------------------
Q 025113 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQ------------------- 219 (257)
Q Consensus 163 ~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~~------------------- 219 (257)
+++||++|++ +||+||+|+|+||+++|++.+++++.|+++||||||.+++++.. +.
T Consensus 158 ~a~Ei~~q~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~ 236 (317)
T PRK06815 158 IGMELVEQQP-DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGGVE 236 (317)
T ss_pred HHHHHHHhcC-CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCcccCCCCCChhhhhccCCc
Confidence 9999999995 69999999999999999999999999999999999999887632 10
Q ss_pred cc--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 220 RG--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 220 ~~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
+. .+++.+.+.++++.|+|+|+.+++++|+++++++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~~gi~ve 276 (317)
T PRK06815 237 PGAITFPLCQQLIDQKVLVSEEEIKEAMRLIAETDRWLIE 276 (317)
T ss_pred ccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCeEe
Confidence 00 112345678999999999999999999999999875
No 32
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=1.9e-52 Score=369.94 Aligned_cols=237 Identities=24% Similarity=0.279 Sum_probs=209.1
Q ss_pred CCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEE
Q 025113 17 NTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLI 96 (257)
Q Consensus 17 ~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~ 96 (257)
+|||++++++++..+.+||+|+|++|||||||||++.+++.++.++|. .+ .++||++|+||||+|+|++|+.+|++|+
T Consensus 1 ~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-~~-~~~vv~aSsGN~g~alA~~a~~~G~~~~ 78 (316)
T cd06448 1 KTPLIESTALSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGL-NE-CVHVVCSSGGNAGLAAAYAARKLGVPCT 78 (316)
T ss_pred CCCccccchhhHhhCCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhc-cc-CCeEEEeCCcHHHHHHHHHHHHcCCCEE
Confidence 699999999988778899999999999999999999999999999885 22 3579999999999999999999999999
Q ss_pred EEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHHhhhCC--C
Q 025113 97 IVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGG--K 174 (257)
Q Consensus 97 i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~--~ 174 (257)
||||.++++.|++.|+.+||+|+.++++ .++++.+.+++++++.++++|++||+||.+ +.||.|+++||++|+++ .
T Consensus 79 iv~p~~~~~~k~~~l~~~GA~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~n~~~-~~g~~t~~~Ei~~q~~~~~~ 156 (316)
T cd06448 79 IVVPESTKPRVVEKLRDEGATVVVHGKV-WWEADNYLREELAENDPGPVYVHPFDDPLI-WEGHSSMVDEIAQQLQSQEK 156 (316)
T ss_pred EEECCCCCHHHHHHHHHcCCEEEEECCc-hHHHHHHHHHHHHhccCCcEEeCCCCCchh-hccccHHHHHHHHHccccCC
Confidence 9999999999999999999999999853 267777778888777658899999999998 78889999999999975 5
Q ss_pred CCEEEEecCchhHHHHHHHHHHhcC-CCcEEEEEeCCCCccccC----CC----------------c--c--cceecccc
Q 025113 175 VDAFISGIGTGGTVTGAGRFLKENN-PDIKVYGVEPSESAVLNG----GQ----------------R--G--LFIFISYL 229 (257)
Q Consensus 175 ~d~iv~pvG~Gg~~aGi~~~~k~~~-~~~~vigv~~~~~~~~~~----~~----------------~--~--~~~i~~~~ 229 (257)
||+||+|+|+||+++|++.+|++++ ++++||+|||.+++++.+ +. + + .+++.+..
T Consensus 157 ~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g~~~~~~~~~~g~~~~~~~~~t~a~glg~~~~~~~~~~~~~~~ 236 (316)
T cd06448 157 VDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAKTVSSQALEYAQEH 236 (316)
T ss_pred CCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCCChHHHHHHHcCCcEecCCCCchhhccCCCCcCHHHHHHHHhc
Confidence 9999999999999999999999996 999999999999877632 10 0 0 12344556
Q ss_pred CCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 230 FRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 230 ~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
.++++.|+|+|+.+++++|+++++++++
T Consensus 237 ~~~~v~Vsd~e~~~a~~~l~~~~gi~~~ 264 (316)
T cd06448 237 NIKSEVVSDRDAVQACLRFADDERILVE 264 (316)
T ss_pred CCeEEEECHHHHHHHHHHHHHHcCceec
Confidence 7899999999999999999999999874
No 33
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=3.2e-52 Score=380.60 Aligned_cols=240 Identities=18% Similarity=0.241 Sum_probs=210.7
Q ss_pred cCCCCceecccccCCCC--------ceEEEEeCCCCC-CCChhhHHHHHHHHH-----HHHcCCCCCCc-----------
Q 025113 15 IGNTPMVYLNNVVDGCV--------ARIAAKLETMEP-CSSVKDRIAYSMIKD-----AEDKGLITPGK----------- 69 (257)
Q Consensus 15 ~~~TPl~~~~~l~~~~~--------~~l~~K~E~~~p-tGS~K~R~a~~~~~~-----a~~~g~~~~g~----------- 69 (257)
+++|||++++.+++..| .+||+|+|++|| |||||+|++.+++.. +.+.|.+.|+.
T Consensus 73 ~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~~ 152 (441)
T PRK02991 73 IIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEFR 152 (441)
T ss_pred ccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhhh
Confidence 89999999999886554 699999999999 999999999999875 55778777663
Q ss_pred -----eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCe
Q 025113 70 -----TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDG 144 (257)
Q Consensus 70 -----~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (257)
.+||++|+||||+|+|++|+.+|++++||||+++++.|++.++.+||+|+.+++ +|+++.+.+++++++.+++
T Consensus 153 ~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~~~~--~~~~a~~~A~~la~~~~~~ 230 (441)
T PRK02991 153 QFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRSHGVTVVEYEG--DYGVAVEEGRKAAESDPNC 230 (441)
T ss_pred hhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhcCCe
Confidence 469999999999999999999999999999999999999999999999999994 5999999999998887678
Q ss_pred EEeCCCCCCcchHhhHhhHHHHHHhhhCC--------CCCEEEEecCchhHHHHHHHHHHhc-CCCcEEEEEeCCCCccc
Q 025113 145 YLLRQFENPANPKIHYETTGPEIWQDSGG--------KVDAFISGIGTGGTVTGAGRFLKEN-NPDIKVYGVEPSESAVL 215 (257)
Q Consensus 145 ~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~--------~~d~iv~pvG~Gg~~aGi~~~~k~~-~~~~~vigv~~~~~~~~ 215 (257)
+|+++++++.. +.||+|+++||++|+++ .||+||+|+|+||+++|++.++|++ .|+++||+|||.+++++
T Consensus 231 ~~~~~~~~~~~-iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga~~~ 309 (441)
T PRK02991 231 YFIDDENSRTL-FLGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCM 309 (441)
T ss_pred EeCCCCCchhH-HHhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCChHH
Confidence 99999877766 89999999999999952 2679999999999999999999997 68899999999998765
Q ss_pred cC----CC------------------------cc--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 216 NG----GQ------------------------RG--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 216 ~~----~~------------------------~~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
.. +. ++ .+++++.+.|+++.|+|+|+.+|++.|+++++++|.
T Consensus 310 ~~s~~~G~~~~~~~~~~g~~~~Tiadgl~~~~~~~~~~~~~~~~vd~~v~VsD~ei~~a~~~L~~~~gi~vE 381 (441)
T PRK02991 310 LLGLMTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGVYTVSDETLYRLLGLLADTEGIRLE 381 (441)
T ss_pred HHHHhcCCCcceeccccCCCCcchhhhhcCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceee
Confidence 21 11 01 135567789999999999999999999999999873
No 34
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=1.9e-52 Score=379.19 Aligned_cols=231 Identities=26% Similarity=0.384 Sum_probs=210.2
Q ss_pred CCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEE
Q 025113 18 TPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLII 97 (257)
Q Consensus 18 TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i 97 (257)
|||+++++|+...|.+||+|+|++|||||||+|++.+++.++.++++. .+||++|+||||+|+|++|+.+|++++|
T Consensus 1 TPl~~~~~ls~~~g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~~----~~vv~aSsGN~g~alA~~a~~~G~~~~i 76 (380)
T TIGR01127 1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQRQ----RGVVAASAGNHAQGVAYAAKKFGIKAVI 76 (380)
T ss_pred CCceehHHHHHHhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhccC----CEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 899999999988889999999999999999999999999999988752 4699999999999999999999999999
Q ss_pred EeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHHhhhCCCCCE
Q 025113 98 VMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDA 177 (257)
Q Consensus 98 ~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~~~d~ 177 (257)
|||+++++.|++.++.+||+|+.++. +++++.+.+++++++. +++|++||+|+.+ +.||+|+++||++|++ +||+
T Consensus 77 v~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~a~~~a~~~~~~~-~~~~~~~~~~~~~-~~g~~t~~~Ei~~q~~-~~D~ 151 (380)
T TIGR01127 77 VMPESAPPSKVKATKSYGAEVILHGD--DYDEAYAFATSLAEEE-GRVFVHPFDDEFV-MAGQGTIGLEIMEDIP-DVDT 151 (380)
T ss_pred EEcCCCcHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCCCCChhh-hhhhHHHHHHHHHhCC-CCCE
Confidence 99999999999999999999999984 5999999999998886 8899999999988 7999999999999994 7999
Q ss_pred EEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CC------------------cc--cceeccccCCeE
Q 025113 178 FISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQ------------------RG--LFIFISYLFRSF 233 (257)
Q Consensus 178 iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~~------------------~~--~~~i~~~~~~~~ 233 (257)
||+|+|+||+++|++.++|++.|++|||||||.+++++.. +. ++ .+.+.+.+.|++
T Consensus 152 vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~~~~~~~~~~g~~~~~~~~~~~a~g~~~~~~~~~~~~~~~~~vd~~ 231 (380)
T TIGR01127 152 VIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTFNIIKEYVDDV 231 (380)
T ss_pred EEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCeecchhCCCccHHHHHHHHHhCCEE
Confidence 9999999999999999999999999999999999877531 11 11 124556789999
Q ss_pred EEeChHHHHHHHHHHHhhcCeecC
Q 025113 234 VLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 234 v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
+.|+|+|+.+|+++|+++++++++
T Consensus 232 v~V~d~e~~~a~~~l~~~~gi~~e 255 (380)
T TIGR01127 232 VTVDEEEIANAIYLLLERHKILAE 255 (380)
T ss_pred EEECHHHHHHHHHHHHHhcCeEec
Confidence 999999999999999999998864
No 35
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=4.1e-52 Score=367.01 Aligned_cols=240 Identities=26% Similarity=0.386 Sum_probs=213.3
Q ss_pred chhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHH
Q 025113 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (257)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~ 82 (257)
++..+++++...+++|||++++.++.. +.+||+|+|++|||||||||++.+++.++.+ + .++||++|+||||+
T Consensus 9 ~i~~a~~~i~~~i~~TPl~~~~~l~~~-~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~-~-----~~~vv~aSsGN~g~ 81 (310)
T PRK08246 9 DVRAAAQRIAPHIRRTPVLEADGAGFG-PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV-P-----AAGVVAASGGNAGL 81 (310)
T ss_pred HHHHHHHHHhCcCCCCCeeeccccccC-CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc-c-----CCeEEEeCCCHHHH
Confidence 456788999999999999999998876 7899999999999999999999999988765 2 25799999999999
Q ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhh
Q 025113 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (257)
Q Consensus 83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (257)
|+|++|+.+|++|+||||+.+++.|+.+++.+||+|+.++. +++++++.+++++++. +++|++||+||.+ +.||+|
T Consensus 82 a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-i~g~~t 157 (310)
T PRK08246 82 AVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGA--EYADALEAAQAFAAET-GALLCHAYDQPEV-LAGAGT 157 (310)
T ss_pred HHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeCCCCCChhh-hcchHH
Confidence 99999999999999999999999999999999999999985 5888999999988876 8899999999998 789999
Q ss_pred HHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CCc------------------
Q 025113 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQR------------------ 220 (257)
Q Consensus 163 ~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~~~------------------ 220 (257)
+++||++|+ +.||+||+|+|+||+++|++.+++. +++||+|||.+++++.. +.+
T Consensus 158 ~~~Ei~eq~-~~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi~ve~~~~~~~~~s~~~g~~~~~~~~~~~~~~l~~~~~ 233 (310)
T PRK08246 158 LGLEIEEQA-PGVDTVLVAVGGGGLIAGIAAWFEG---RARVVAVEPEGAPTLHAALAAGEPVDVPVSGIAADSLGARRV 233 (310)
T ss_pred HHHHHHHhc-CCCCEEEEecCccHHHHHHHHHhcC---CCEEEEEeeCCChHHHHHHHcCCcccCCCCCceeccccCCCc
Confidence 999999999 4799999999999999999999965 48999999999877632 110
Q ss_pred c--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 221 G--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 221 ~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
+ ++.+.+.+.|+++.|+|+|+.+|+++|+++++++++
T Consensus 234 ~~~~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~egi~~e 272 (310)
T PRK08246 234 GEIAFALARAHVVTSVLVSDEAIIAARRALWEELRLAVE 272 (310)
T ss_pred cHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHcCceee
Confidence 0 233556788999999999999999999999999874
No 36
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=5e-52 Score=377.97 Aligned_cols=241 Identities=20% Similarity=0.259 Sum_probs=211.6
Q ss_pred ccCCCCceecccccCCC--------CceEEEEeCCCCC-CCChhhHHHHHHHHH-----HHHcCCCCCCc----------
Q 025113 14 LIGNTPMVYLNNVVDGC--------VARIAAKLETMEP-CSSVKDRIAYSMIKD-----AEDKGLITPGK---------- 69 (257)
Q Consensus 14 ~~~~TPl~~~~~l~~~~--------~~~l~~K~E~~~p-tGS~K~R~a~~~~~~-----a~~~g~~~~g~---------- 69 (257)
++++|||++++.+++.+ +.+||+|+|++|| |||||+|++.+++.. +.+.|.+.++.
T Consensus 67 ~~~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~ 146 (431)
T TIGR02035 67 GIIESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKF 146 (431)
T ss_pred CccCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhh
Confidence 99999999999987633 4699999999999 999999999999874 77889888774
Q ss_pred ------eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCC
Q 025113 70 ------TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPD 143 (257)
Q Consensus 70 ------~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (257)
.+||++|+||||+|+|++|+.+|++++||||+++++.|++.++.+||+|+.+++ +|+++.+.+++++++.++
T Consensus 147 ~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~~~~--~~~~a~~~A~~la~~~~~ 224 (431)
T TIGR02035 147 KDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVEYES--DYGVAVEEGRKNADADPM 224 (431)
T ss_pred hhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCC
Confidence 479999999999999999999999999999999999999999999999999995 599999999999988767
Q ss_pred eEEeCCCCCCcchHhhHhhHHHHHHhhhCC--------CCCEEEEecCchhHHHHHHHHHHhc-CCCcEEEEEeCCCCcc
Q 025113 144 GYLLRQFENPANPKIHYETTGPEIWQDSGG--------KVDAFISGIGTGGTVTGAGRFLKEN-NPDIKVYGVEPSESAV 214 (257)
Q Consensus 144 ~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~--------~~d~iv~pvG~Gg~~aGi~~~~k~~-~~~~~vigv~~~~~~~ 214 (257)
++|+++ .|+.++++||+|+++||++|+++ .||+|++|+|+||+++|++.++|++ .|+++||+|||.++++
T Consensus 225 ~~~~d~-~n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~s~~ 303 (431)
T TIGR02035 225 CYFVDD-ENSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPC 303 (431)
T ss_pred eEECCC-CCcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeCCCHH
Confidence 788887 45566689999999999999952 4779999999999999999999997 8899999999999876
Q ss_pred cc----CCC------------------------cc--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 215 LN----GGQ------------------------RG--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 215 ~~----~~~------------------------~~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
+. .+. ++ .+.+++.+.|++++|+|+|+.+++++|+++++++|.
T Consensus 304 ~~~s~~~g~~~~~~~~~~g~~~~T~AdGlav~~p~~~~~~~~~~~vd~vv~VsD~ei~~a~~~L~~~egi~vE 376 (431)
T TIGR02035 304 MLLGVYTGLHEKISVQDIGIDNITAADGLAVGRPSGFVGRLMEPLLSGIYTVDDYTLYDLLRILAESEGKRLE 376 (431)
T ss_pred HHHHHhcCCCccccccccCCCCCceeccccCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeEc
Confidence 41 110 11 123456688999999999999999999999999873
No 37
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=4.7e-52 Score=387.00 Aligned_cols=242 Identities=26% Similarity=0.388 Sum_probs=218.2
Q ss_pred hHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHH
Q 025113 8 KRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI 87 (257)
Q Consensus 8 ~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~ 87 (257)
..++...+++|||+++++|+...|.+||+|+|++|||||||+|++.+++..+.+... ..+||++|+||||+++|++
T Consensus 11 ~~~v~~~~~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gvV~aSaGNha~avA~a 86 (504)
T PRK09224 11 TARVYDVAQETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQL----ARGVITASAGNHAQGVALS 86 (504)
T ss_pred HHHhcCcCCCCCceehhHhHHHhCCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhc----CCEEEEECcCHHHHHHHHH
Confidence 457888999999999999998888999999999999999999999999998764322 3569999999999999999
Q ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHH
Q 025113 88 AAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEI 167 (257)
Q Consensus 88 a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei 167 (257)
|+.+|++++||||.+++..|++.++.+||+|+.++. +++++.+.+.+++++. +++|++||+||.+ +.|++|++.||
T Consensus 87 a~~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~~g~--~~~~a~~~a~~l~~~~-g~~~v~~f~~~~~-i~G~gTi~~EI 162 (504)
T PRK09224 87 AARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHGD--SFDEAYAHAIELAEEE-GLTFIHPFDDPDV-IAGQGTIAMEI 162 (504)
T ss_pred HHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcHH-HHhHHHHHHHH
Confidence 999999999999999999999999999999999984 6999999999998885 8899999999998 78999999999
Q ss_pred HhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CC------------------cc--cc
Q 025113 168 WQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQ------------------RG--LF 223 (257)
Q Consensus 168 ~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~~------------------~~--~~ 223 (257)
++|+++.||+||+|+||||+++|++.++|.+.|+++||||||.+++++.. +. ++ .+
T Consensus 163 ~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~~~~~~s~~~g~~~~~~~~~~~adg~av~~~g~~~~ 242 (504)
T PRK09224 163 LQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACLKAALEAGERVDLPQVGLFADGVAVKRIGEETF 242 (504)
T ss_pred HHhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCCccCCCCCcccCcccCCCccHHHH
Confidence 99996559999999999999999999999999999999999999887632 11 11 24
Q ss_pred eeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 224 IFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 224 ~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
++++.+.|++++|+|+|+.+|++.|+++++++++
T Consensus 243 ~~~~~~vd~~v~Vsd~ei~~a~~~l~~~~~~~~e 276 (504)
T PRK09224 243 RLCQEYVDDVITVDTDEICAAIKDVFEDTRSIAE 276 (504)
T ss_pred HHHHhcCCeEEEECHHHHHHHHHHHHHhcCeEEc
Confidence 5667889999999999999999999999999874
No 38
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=5e-52 Score=369.92 Aligned_cols=245 Identities=19% Similarity=0.252 Sum_probs=215.3
Q ss_pred chhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHH
Q 025113 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (257)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~ 82 (257)
++..+++++...+++|||++++.|++..|++||+|+|++|||||||+|++.+++.++.++|.+. ++||++|+||||+
T Consensus 9 ~i~~A~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~---~~vv~~SsGN~g~ 85 (338)
T PRK06608 9 NIAAAHNRIKQYLHLTPIVHSESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLP---DKIVAYSTGNHGQ 85 (338)
T ss_pred HHHHHHHHHhCcCcCCCccchHhHHHHhCCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcC---CeEEEECCCHHHH
Confidence 4567889999999999999999999888889999999999999999999999999999988642 4699999999999
Q ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhh
Q 025113 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (257)
Q Consensus 83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (257)
|+|++|+.+|++++||||.++++.|+++++.+||+|+.++. .+++.+.+++ +++ +++||++||+|+.+ +.|++|
T Consensus 86 alA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~~---~~~~~~~a~~-~~~-~~~~~~~~~~~~~~-~~g~~t 159 (338)
T PRK06608 86 AVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNT---RQEAEEKAKE-DEE-QGFYYIHPSDSDST-IAGAGT 159 (338)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC---HHHHHHHHHH-HHh-CCCEEcCCCCCHHH-hccHHH
Confidence 99999999999999999999999999999999999999974 4677777777 444 48899999999988 689999
Q ss_pred HHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCC------c-----------c
Q 025113 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN----GGQ------R-----------G 221 (257)
Q Consensus 163 ~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~----~~~------~-----------~ 221 (257)
+++||++|++++||+||+|+|+||+++|++.++|...++++||+|||.+++++. .+. + .
T Consensus 160 ~a~Ei~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~~~~~~~~s~~~g~~~~~~~~~~t~~~gl~~~~ 239 (338)
T PRK06608 160 LCYEALQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEPLNANDAYLSLKNNKIYRLNYSPNTIADGLKTLS 239 (338)
T ss_pred HHHHHHHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEeeCCChHHHHHHHcCCeEeCCCCCCCeecccCCCC
Confidence 999999999768999999999999999999999999999999999999986542 111 0 0
Q ss_pred ----cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 222 ----LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 222 ----~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
.+++++. .|+++.|+|+|+.++++.|+++++++++
T Consensus 240 ~~~~~~~~~~~-~d~~v~Vsd~e~~~a~~~l~~~~gi~ve 278 (338)
T PRK06608 240 VSARTFEYLKK-LDDFYLVEEYEIYYWTAWLTHLLKVICE 278 (338)
T ss_pred CCHHHHHHHHh-CCCEEEECHHHHHHHHHHHHHHcCcEEc
Confidence 0222233 5889999999999999999999999874
No 39
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=5.2e-52 Score=365.94 Aligned_cols=247 Identities=25% Similarity=0.356 Sum_probs=221.8
Q ss_pred CchhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHH
Q 025113 2 EDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTG 81 (257)
Q Consensus 2 ~~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~ 81 (257)
++++.+++.|...+++|||+++++|+..+|.+||+|+|++|||||||||++.+++.++.+.+. ..+||++|+||||
T Consensus 2 ~~~~~~~~~i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~~----~~~iv~~ssGN~g 77 (304)
T cd01562 2 EDILAAAARIKPVVRRTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEER----AKGVVAASAGNHA 77 (304)
T ss_pred hHHHHHHHHHhCcCCCCCcccchhhHHHhCCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhhc----CCcEEEECCCHHH
Confidence 467889999999999999999999988788899999999999999999999999999987762 2469999999999
Q ss_pred HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHh
Q 025113 82 VGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYE 161 (257)
Q Consensus 82 ~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (257)
+|+|++|+.+|+++++|||++.++.|+++|+.+||+|+.+++ +++++.+.+++++++. +++|++|++|+.+ ..||.
T Consensus 78 ~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~--~~~~~~~~a~~la~~~-~~~~~~~~~n~~~-~~g~~ 153 (304)
T cd01562 78 QGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGE--DFDEAEAKARELAEEE-GLTFIHPFDDPDV-IAGQG 153 (304)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcch-hccHH
Confidence 999999999999999999999999999999999999999996 4899999999998886 8899999999988 68999
Q ss_pred hHHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CC------------------
Q 025113 162 TTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQ------------------ 219 (257)
Q Consensus 162 t~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~~------------------ 219 (257)
++++||++|++ .||+||+|+||||+++|++++||.+.++++||+|||.+++++.. +.
T Consensus 154 ~~~~Ei~~q~~-~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~ 232 (304)
T cd01562 154 TIGLEILEQVP-DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKR 232 (304)
T ss_pred HHHHHHHHhcC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHcCCcccCCCCCcccccccCCC
Confidence 99999999996 59999999999999999999999999999999999998876531 10
Q ss_pred cc--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 220 RG--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 220 ~~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
+. .+.+.+.+.++++.|+|+|+.+++++|+++++++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~~ 272 (304)
T cd01562 233 PGELTFEIIRKLVDDVVTVSEDEIAAAMLLLFEREKLVAE 272 (304)
T ss_pred chHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCceEc
Confidence 01 122345678999999999999999999999999875
No 40
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=2.3e-51 Score=380.28 Aligned_cols=249 Identities=41% Similarity=0.674 Sum_probs=215.9
Q ss_pred hHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHH
Q 025113 8 KRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI 87 (257)
Q Consensus 8 ~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~ 87 (257)
++.+...+++|||+++++|+...+.+||+|+|++|||||||+|++.+++.++.++|.+.+| ++|+++|+||||+|+|++
T Consensus 2 ~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g-~~vv~~ssGN~g~alA~~ 80 (454)
T TIGR01137 2 RDNIIDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPG-DTIIEPTSGNTGIGLALV 80 (454)
T ss_pred ccchHHhcCCCceEEccccCCCCCceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHHH
Confidence 3456778999999999999988888999999999999999999999999999999998887 569999999999999999
Q ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHH---HHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHH
Q 025113 88 AAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFE---EILEKGEEILKKTPDGYLLRQFENPANPKIHYETTG 164 (257)
Q Consensus 88 a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~ 164 (257)
|+.+|++++||||+++++.|+..++.+||+|+.+++...++ ...+.+++++++.++.+|++||+|+.|+..||.|+|
T Consensus 81 a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~ 160 (454)
T TIGR01137 81 AAIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTG 160 (454)
T ss_pred HHHcCCeEEEEeCCCcCHHHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhH
Confidence 99999999999999999999999999999999998632233 235667778777557788999999999888999999
Q ss_pred HHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCC-----C--c----------ccceecc
Q 025113 165 PEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGG-----Q--R----------GLFIFIS 227 (257)
Q Consensus 165 ~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~-----~--~----------~~~~i~~ 227 (257)
+||++|+++.||+||+|+||||+++|++.++|+..|+++||||||.+++...+. . + .+..+..
T Consensus 161 ~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 240 (454)
T TIGR01137 161 PEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGSILAQPENLNKTGRTPYKVEGIGYDFIPTVLDR 240 (454)
T ss_pred HHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCcccCCCCCCccCCCCCCCCCCCcCCc
Confidence 999999976899999999999999999999999999999999999987533210 0 0 0111234
Q ss_pred ccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 228 YLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 228 ~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
...|+++.|+|+|+.++++.|+++++++++
T Consensus 241 ~~~d~~~~V~~~e~~~a~~~l~~~~gi~~~ 270 (454)
T TIGR01137 241 KVVDEWIKTDDKESFKMARRLIKEEGLLVG 270 (454)
T ss_pred hhCCeEEEECHHHHHHHHHHHHHHhCccCc
Confidence 467889999999999999999999999874
No 41
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-52 Score=361.79 Aligned_cols=245 Identities=22% Similarity=0.287 Sum_probs=224.0
Q ss_pred hhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHH
Q 025113 5 NAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGL 84 (257)
Q Consensus 5 ~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~al 84 (257)
...+..++..+..|||.+.-.|++.+|.++|+|+|++||+||||.||+.+++.+..++++ +.+|+++|.||||+|+
T Consensus 54 ~~~~~~i~~~~~~TPl~~s~~lS~~~g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~----~~gViasSaGNha~a~ 129 (457)
T KOG1250|consen 54 SSAHFKIYPVIVETPLLKSVALSKKAGMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQK----KAGVIASSAGNHAQAA 129 (457)
T ss_pred hhhhhccccceecccchhhhhhhhhcCCceEEEehhcccccceehhhHHHHHHHHHHhhh----cCceEEecCccHHHHH
Confidence 345677888999999999988999999999999999999999999999999999888775 4679999999999999
Q ss_pred HHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHH
Q 025113 85 AFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTG 164 (257)
Q Consensus 85 A~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~ 164 (257)
|++|+++|++++||||..++..|++.++.+||+|++.+ .+|+++...++++++++ ++.|++|||+|+. .+|++|++
T Consensus 130 Ayaa~~LgipaTIVmP~~tp~~kiq~~~nlGA~Vil~G--~~~deAk~~a~~lAke~-gl~yI~pfDhP~I-~aGqgTig 205 (457)
T KOG1250|consen 130 AYAARKLGIPATIVMPVATPLMKIQRCRNLGATVILSG--EDWDEAKAFAKRLAKEN-GLTYIPPFDHPDI-WAGQGTIG 205 (457)
T ss_pred HHHHHhcCCceEEEecCCChHHHHHHHhccCCEEEEec--ccHHHHHHHHHHHHHhc-CceecCCCCCchh-hcCcchHH
Confidence 99999999999999999999999999999999999999 46999999999999998 9999999999998 78999999
Q ss_pred HHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----CCc--------------------
Q 025113 165 PEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----GQR-------------------- 220 (257)
Q Consensus 165 ~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----~~~-------------------- 220 (257)
.||.+|+..++++|+||||+||+++||+.++|..+|+++|||||+++|.++.. +.+
T Consensus 206 ~EIl~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~ 285 (457)
T KOG1250|consen 206 LEILEQLKEPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETEGAHSFNASLKAGKPVTLPKITSLADGLAVKTVGE 285 (457)
T ss_pred HHHHHhhcCCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeecCcHHHHHHHhcCCeeecccccchhcccccchhhH
Confidence 99999996556699999999999999999999999999999999999987632 111
Q ss_pred ccceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 221 GLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 221 ~~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
..++..+.+.|+++.|+|+||..|+..|.++++.+|.
T Consensus 286 ~tf~~a~~~~d~vvvV~~~ei~aaI~~l~edek~vvE 322 (457)
T KOG1250|consen 286 NTFELAQKLVDRVVVVEDDEIAAAILRLFEDEKMVVE 322 (457)
T ss_pred HHHHHHHhcCceEEEeccHHHHHHHHHHHHhhhheec
Confidence 1256677899999999999999999999999999874
No 42
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=1.4e-51 Score=369.11 Aligned_cols=239 Identities=22% Similarity=0.259 Sum_probs=207.8
Q ss_pred HhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHH
Q 025113 9 RDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (257)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a 88 (257)
.++++.+|+|||++++.|+...+.+||+|+|++|||||||||++.+++.++.++|. .+||++|+||||+|+|++|
T Consensus 20 ~~~~l~~G~TPL~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~AlA~~a 94 (351)
T PRK06352 20 PMISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGA-----EAVICASTGNTSAAAAAYA 94 (351)
T ss_pred CccccCCCCCCeeEcHhhHHHhCCeEEEEecCCCCccChHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHH
Confidence 45888999999999999988778899999999999999999999999999999874 5799999999999999999
Q ss_pred HHcCCcEEEEeCCC-CCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHH
Q 025113 89 AARGYNLIIVMPST-CSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEI 167 (257)
Q Consensus 89 ~~~g~~~~i~vp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei 167 (257)
+.+|++|+||||++ .++.|+++++.+||+|+.+++ +++++.+.+++++++. ++++++ +.||++ +.||.|+++||
T Consensus 95 a~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~-~~n~~~-~~G~~t~~~EI 169 (351)
T PRK06352 95 TRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQG--NFDEALKSVRELAETE-AVTLVN-SVNPYR-LEGQKTAAFEI 169 (351)
T ss_pred HHcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-Cccccc-CCCccc-eeeHHHHHHHH
Confidence 99999999999997 589999999999999999995 5889999999998875 666555 568888 68999999999
Q ss_pred HhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCC-----cEEEEEeCCCCccccCCCc----------------ccceec
Q 025113 168 WQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPD-----IKVYGVEPSESAVLNGGQR----------------GLFIFI 226 (257)
Q Consensus 168 ~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~-----~~vigv~~~~~~~~~~~~~----------------~~~~i~ 226 (257)
++|++..||+||+|+|+||+++|++++||++.++ ++||+|||.+++++..+.+ ..+...
T Consensus 170 ~~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~~~~~g~~~~~~~~ia~~l~~~~~~~~~~~ 249 (351)
T PRK06352 170 CEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAAAIVQGKPIDNPETIATAIRIGNPASWGLA 249 (351)
T ss_pred HHHcCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCCHHHhCCCcCCCCcceeEEEeCCCCcHHHH
Confidence 9999767999999999999999999999998876 8999999999876543221 111111
Q ss_pred ----cccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 227 ----SYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 227 ----~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
+...+.++.|+|+|+.+|+++|+++++++++
T Consensus 250 ~~~~d~~~g~~~~V~d~e~~~a~r~la~~eGi~ve 284 (351)
T PRK06352 250 EAARDESGGYIHSVTDDEIVNAYKKIAAQDGVFIE 284 (351)
T ss_pred HHHHHHhCCEEEEECHHHHHHHHHHHHhhcCceEc
Confidence 1223348999999999999999999999875
No 43
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=2.6e-51 Score=375.12 Aligned_cols=240 Identities=17% Similarity=0.205 Sum_probs=214.2
Q ss_pred hhhcccCCCCceecccccCCCCc-eEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHH
Q 025113 10 DVTELIGNTPMVYLNNVVDGCVA-RIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (257)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~~~-~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a 88 (257)
.+++++|+|||+++++|++.+|. +||+|+|++|||||||||++.+++.+|.+.|. .+|+++|+||||+|+|++|
T Consensus 82 ~v~l~eG~TPLv~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~-----~~vv~aSsGN~g~alA~~a 156 (421)
T PRK07591 82 PVDLGPGFTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAARELGF-----TTVACASTGNLANSVAAHA 156 (421)
T ss_pred CCcCCCCCCcceEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHHH
Confidence 47889999999999999888884 89999999999999999999999999999885 5789999999999999999
Q ss_pred HHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHH
Q 025113 89 AARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIW 168 (257)
Q Consensus 89 ~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~ 168 (257)
+++|++|+||||+++++.|+.+++.+||+|+.+++ +++++.+.+++++++.++++|++++.||+. +.|++|+++||+
T Consensus 157 a~~Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g--~~d~a~~~a~~~~~~~~~~~~~n~~~~p~~-ieG~~Tia~Ei~ 233 (421)
T PRK07591 157 ARAGLDSCVFIPADLEAGKIVGTLVYGPTLVAVDG--NYDDVNRLCSELANEHEGWGFVNINLRPYY-AEGSKTLGYEVA 233 (421)
T ss_pred HHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCCEEEecCCCCccc-ccchHHHHHHHH
Confidence 99999999999999999999999999999999995 489999999999888768899999888887 789999999999
Q ss_pred hhhCCC-CCEEEEecCchhHHHHHHHHHHhc-------CCCcEEEEEeCCCCccccC----CC-----------------
Q 025113 169 QDSGGK-VDAFISGIGTGGTVTGAGRFLKEN-------NPDIKVYGVEPSESAVLNG----GQ----------------- 219 (257)
Q Consensus 169 ~ql~~~-~d~iv~pvG~Gg~~aGi~~~~k~~-------~~~~~vigv~~~~~~~~~~----~~----------------- 219 (257)
+|++++ ||+||+|+|+||+++|++.+|+++ .+.+|||+|||++++++.. +.
T Consensus 234 eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~~~~~~~g~~~~~~~~~~tia~~l~~ 313 (421)
T PRK07591 234 EQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPIAQAFKEGRDVVKPVKPNTIAKSLAI 313 (421)
T ss_pred HHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHHHHHHHcCCCcccCCCCCchhhheec
Confidence 999755 999999999999999999999997 5789999999999877642 10
Q ss_pred --cc----cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 220 --RG----LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 220 --~~----~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
|. .+++++.+.++++.|+|+|+.+|+++|+++++++++
T Consensus 314 ~~p~~~~~~~~~i~~~~g~~v~Vsd~ei~~a~~~la~~eGi~~e 357 (421)
T PRK07591 314 GNPADGPYALDIARRTGGAIEDVTDEEIIEGIKLLARTEGIFTE 357 (421)
T ss_pred CCCCCcHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCeeec
Confidence 00 012345566789999999999999999999999874
No 44
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=2.8e-51 Score=372.63 Aligned_cols=239 Identities=21% Similarity=0.208 Sum_probs=212.3
Q ss_pred hhhcccCCCCceecccccCCCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHH
Q 025113 10 DVTELIGNTPMVYLNNVVDGCV-ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (257)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~~-~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a 88 (257)
.++.++|+|||+++++|++.+| .+||+|+|++|||||||||++.+++.+|.+.|. .+|+++|+||||+|+|++|
T Consensus 72 ~vslgeG~TPL~~~~~l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~a 146 (394)
T PRK08197 72 IVSLGEGMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGV-----KHLAMPTNGNAGAAWAAYA 146 (394)
T ss_pred CCccCcCCCCceEhHHHHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHH
Confidence 4888999999999999987777 499999999999999999999999999998874 6799999999999999999
Q ss_pred HHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHH
Q 025113 89 AARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIW 168 (257)
Q Consensus 89 ~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~ 168 (257)
+.+|++++||||+++++.|+.+++.+||+|+.+++ +++++.+.+++++++. ++++++++.||++ +.|+.|+++||+
T Consensus 147 a~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~-g~~~~~~~~np~~-ieG~~t~a~Ei~ 222 (394)
T PRK08197 147 ARAGIRATIFMPADAPEITRLECALAGAELYLVDG--LISDAGKIVAEAVAEY-GWFDVSTLKEPYR-IEGKKTMGLELA 222 (394)
T ss_pred HHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CcccccCCCCccc-hhcHHHHHHHHH
Confidence 99999999999999999999999999999999995 4888888998888876 7999999999999 789999999999
Q ss_pred hhhCCC-CCEEEEecCchhHHHHHHHHHHhc-------CCCcEEEEEeCCCCccccC----CC-----------------
Q 025113 169 QDSGGK-VDAFISGIGTGGTVTGAGRFLKEN-------NPDIKVYGVEPSESAVLNG----GQ----------------- 219 (257)
Q Consensus 169 ~ql~~~-~d~iv~pvG~Gg~~aGi~~~~k~~-------~~~~~vigv~~~~~~~~~~----~~----------------- 219 (257)
+|++++ ||+||+|+|+||+++|++.+|+++ .+.+++|+|||++++++.. +.
T Consensus 223 eQl~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l~~~~~~g~~~~~~~~~~~tia~gl~ 302 (394)
T PRK08197 223 EQLGWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPIVKAWEEGKEESEFWEDAHTVAFGIR 302 (394)
T ss_pred HHcCCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHHHHHHHcCCCccccCCCCCceehhhh
Confidence 999754 999999999999999999999987 3789999999999876531 10
Q ss_pred -ccc------ceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 220 -RGL------FIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 220 -~~~------~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
+.+ .+.++.+.+.++.|+|+|+.+|+++|+++++++++
T Consensus 303 ~~~~~~~~~~~~~~~~~~g~~v~V~d~e~~~a~~~la~~eGi~ve 347 (394)
T PRK08197 303 VPKALGDFLVLDAVRETGGCAIAVSDDAILAAQRELAREEGLFAC 347 (394)
T ss_pred CCCCCCHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHHhcCCceEC
Confidence 001 12234566779999999999999999999999874
No 45
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-52 Score=355.69 Aligned_cols=250 Identities=59% Similarity=0.920 Sum_probs=231.1
Q ss_pred hhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHH
Q 025113 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF 86 (257)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~ 86 (257)
....+...+|+|||+.+.+....+.+++++|+|.+||+||.|||.++.|+.+|+..|.+.||.+++++++|||+|.++|+
T Consensus 42 ~~~~~~~liG~TPlv~ln~i~~g~~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigLA~ 121 (362)
T KOG1252|consen 42 ILWDVRDLIGNTPLVKLNKIAGGCVARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGLAY 121 (362)
T ss_pred hhhhHHHHhCCCceEEeccccCCccceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHHHHH
Confidence 45677889999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHH---HHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhH
Q 025113 87 IAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEE---ILEKGEEILKKTPDGYLLRQFENPANPKIHYETT 163 (257)
Q Consensus 87 ~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (257)
+|+..|++++++||+.++.+|+..|+.|||+|++++....++. ++..+.++..+.|+.+.++||.||.||..||.|+
T Consensus 122 ~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy~tt 201 (362)
T KOG1252|consen 122 MAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAHYETT 201 (362)
T ss_pred HHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCcccccccc
Confidence 9999999999999999999999999999999999997655655 8889999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCccc--cee------------cccc
Q 025113 164 GPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGL--FIF------------ISYL 229 (257)
Q Consensus 164 ~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~~~--~~i------------~~~~ 229 (257)
+.|||+|+.+++|.+|.++|||||++|+.+++|+.+|+++|++|||.+|..+.+..+++ +.+ ....
T Consensus 202 g~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~~~~~I~GIGyg~~p~~ld~~~ 281 (362)
T KOG1252|consen 202 GPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGPTFHKIQGIGYGFIPTTLDTKL 281 (362)
T ss_pred cHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCCCCCCCccceeccccCcCccccchHH
Confidence 99999999999999999999999999999999999999999999999998887766665 333 2335
Q ss_pred CCeEEEeChHHHHHHHHHHHhhcCeec
Q 025113 230 FRSFVLVDDGAVVHLHNYLLLHIFTLV 256 (257)
Q Consensus 230 ~~~~v~v~d~e~~~a~~~l~~~~~~~v 256 (257)
+|+.+.++++|+..+-++|+.+++++|
T Consensus 282 vd~~~~~~~d~A~~~Ar~La~eeGll~ 308 (362)
T KOG1252|consen 282 VDEVLKVSSDEAIEMARRLALEEGLLV 308 (362)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhhCeee
Confidence 677888999999999999999999886
No 46
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=1.4e-50 Score=359.11 Aligned_cols=236 Identities=23% Similarity=0.275 Sum_probs=207.8
Q ss_pred cccCCCCceecccccCCCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHc
Q 025113 13 ELIGNTPMVYLNNVVDGCV-ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAAR 91 (257)
Q Consensus 13 ~~~~~TPl~~~~~l~~~~~-~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~ 91 (257)
..+++|||++++.|+..+| .+||+|+|++|||||||||++.+++.++.++|. ++|+++|+||||+|+|++|+.+
T Consensus 11 ~~~g~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-----~~lv~aSsGN~g~alA~~aa~~ 85 (319)
T PRK06381 11 KPPGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGY-----SGITVGTCGNYGASIAYFARLY 85 (319)
T ss_pred ccCCCCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHHHHc
Confidence 4589999999999988887 599999999999999999999999999999885 6799999999999999999999
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCC-CC-cchHhhHhhHHHHHHh
Q 025113 92 GYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFE-NP-ANPKIHYETTGPEIWQ 169 (257)
Q Consensus 92 g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~g~~t~~~Ei~~ 169 (257)
|++|+||||...+..|+++++.+||+|+.+++ +++++.+.+++++++. ++|++++++ || .+ +.||.|+++||++
T Consensus 86 G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~n~~~~-~~G~~t~a~Ei~~ 161 (319)
T PRK06381 86 GLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDG--KYEEAVERSRKFAKEN-GIYDANPGSVNSVVD-IEAYSAIAYEIYE 161 (319)
T ss_pred CCcEEEEECCCCCHHHHHHHHHcCCEEEEcCC--CHHHHHHHHHHHHHHc-CcEecCCCCCCcchH-hhhHHHHHHHHHH
Confidence 99999999999999999999999999999996 4888999999988875 788888886 76 35 7899999999999
Q ss_pred hhCCCCCEEEEecCchhHHHHHHHHHHhc------CCCcEEEEEeCCCCccccC----CCcc----------------c-
Q 025113 170 DSGGKVDAFISGIGTGGTVTGAGRFLKEN------NPDIKVYGVEPSESAVLNG----GQRG----------------L- 222 (257)
Q Consensus 170 ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~------~~~~~vigv~~~~~~~~~~----~~~~----------------~- 222 (257)
|++..||+||+|+|+||+++|++.+|+++ .+.++||+|||.+++++.. +... +
T Consensus 162 ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~ 241 (319)
T PRK06381 162 ALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGNQIVESFKRGSSEVVDLEVDEIRETAVNEPL 241 (319)
T ss_pred HhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCCHHHHHHHcCCCcccCCCcchhhhcccCCCc
Confidence 99767999999999999999999999998 7899999999999865421 1000 0
Q ss_pred -----------ceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 223 -----------FIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 223 -----------~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
++++..+.++.+.|+|+|+.+++++|+++++++++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~g~~~~v~d~e~~~a~~~la~~egi~~e 287 (319)
T PRK06381 242 VSYRSFDGDNALEAIYDSHGYAFGFSDDEMVKYAELLRRMEGLNAL 287 (319)
T ss_pred ccccCCCHHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHhCCcccC
Confidence 11234455689999999999999999999999875
No 47
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-51 Score=336.49 Aligned_cols=247 Identities=22% Similarity=0.323 Sum_probs=224.0
Q ss_pred CchhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHH
Q 025113 2 EDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTG 81 (257)
Q Consensus 2 ~~~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~ 81 (257)
+++..++.|+...+..||.+.++.+.+..|.+||+|+|++|.+||||.|||.+.+..+.++.+ .+.|++.||||||
T Consensus 10 ~dv~~A~~rik~~ihkTpVlTS~~ln~~~g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek~----~kgvithSSGNHa 85 (323)
T KOG1251|consen 10 EDVRAAHQRIKPFIHKTPVLTSENLNEKVGRHVFFKCENFQKTGAFKFRGALNAVSSLKAEKR----AKGVITHSSGNHA 85 (323)
T ss_pred HHHHHHHHHHHhhhccCceechhhHHHHhhhheEeehhhhhhccceehhhhHHHHHHhhHhhh----cCceEeecCCcHH
Confidence 356678999999999999999999999999999999999999999999999999998875443 4679999999999
Q ss_pred HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHh
Q 025113 82 VGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYE 161 (257)
Q Consensus 82 ~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (257)
+|+|++|+..|+|++|+||.++|..|+..++.|||+|+.+++. .+++.+.++++.++. +.+.++||++|.. +.|++
T Consensus 86 qAlalaAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~~--~~sRE~va~~ltee~-g~~~i~Py~~p~v-IaGqg 161 (323)
T KOG1251|consen 86 QALALAAKILGIPATIVVPKDAPICKVAATRGYGANIIFCEPT--VESRESVAKDLTEET-GYYLIHPYNHPSV-IAGQG 161 (323)
T ss_pred HHHHHHHHhcCCCeEEEecCCChHHHHHHHHhcCceEEEecCc--cchHHHHHHHHHHhc-CcEEeCCCCCcce-eeccc
Confidence 9999999999999999999999999999999999999999964 567788899998888 8899999999998 89999
Q ss_pred hHHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC------------------C-----
Q 025113 162 TTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG------------------G----- 218 (257)
Q Consensus 162 t~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~------------------~----- 218 (257)
|+++|+++|.+ .+|++|+|+|+||+++|++.+.+.+.|+++|++|||++++.-.+ |
T Consensus 162 TiA~ElleqVg-~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~d~~qsf~~g~I~~l~tp~TIADG~r~~~ 240 (323)
T KOG1251|consen 162 TIALELLEQVG-EIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAADDGQQSFLKGKIVHLDTPKTIADGVRTSH 240 (323)
T ss_pred hHHHHHHHhhC-ccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccchHHHHHhcCCeEecCCchhhhhhhhhcc
Confidence 99999999995 89999999999999999999999999999999999988653211 1
Q ss_pred -CcccceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 219 -QRGLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 219 -~~~~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
.+..|+|+++++|++++|+|+||.+++++++++=+++|.
T Consensus 241 lG~~t~pIir~~vddi~Tv~e~Ei~~~lk~~~ermK~~vE 280 (323)
T KOG1251|consen 241 LGPLTWPIIRDLVDDILTVSEDEIKEALKLIWERMKVVVE 280 (323)
T ss_pred ccccchHHHHHHhhhheeecHHHHHHHHHHHHHHHheeec
Confidence 122478999999999999999999999999999888763
No 48
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=2.3e-50 Score=362.03 Aligned_cols=239 Identities=23% Similarity=0.230 Sum_probs=208.3
Q ss_pred HhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHH
Q 025113 9 RDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (257)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a 88 (257)
.+++.++|+|||++++.|+...|.+||+|+|++|||||||||++.+++..+.++|. .+||++|+||||+|+|++|
T Consensus 23 ~~~~l~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~-----~~iv~aSsGN~g~alA~~a 97 (353)
T PRK07409 23 PVVTLGEGNTPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGA-----KAVICASTGNTSASAAAYA 97 (353)
T ss_pred CcccCCCCCCCEEEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHH
Confidence 34788999999999999987778899999999999999999999999999998874 5799999999999999999
Q ss_pred HHcCCcEEEEeCCC-CCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHH
Q 025113 89 AARGYNLIIVMPST-CSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEI 167 (257)
Q Consensus 89 ~~~g~~~~i~vp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei 167 (257)
+.+|++++||||+. .++.|+++++.+||+|+.+++ +++++.+.+++++++. +++++++ .||.+ +.||.|+++||
T Consensus 98 ~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~l~~~~-~~~~~~~-~n~~~-~~g~~t~~~EI 172 (353)
T PRK07409 98 ARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQIDG--NFDDALEIVRELAEKY-PVTLVNS-VNPYR-IEGQKTAAFEI 172 (353)
T ss_pred HHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CceecCC-CCchh-hhhHHHHHHHH
Confidence 99999999999997 689999999999999999995 5899999999998877 4677765 58888 67999999999
Q ss_pred HhhhCCCCCEEEEecCchhHHHHHHHHHHhcCC------CcEEEEEeCCCCccccCCCc----------------ccc--
Q 025113 168 WQDSGGKVDAFISGIGTGGTVTGAGRFLKENNP------DIKVYGVEPSESAVLNGGQR----------------GLF-- 223 (257)
Q Consensus 168 ~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~------~~~vigv~~~~~~~~~~~~~----------------~~~-- 223 (257)
++|+++.||+||+|+|+||+++|++.+|+++.+ .+++|+|||.+++++..+.+ ..+
T Consensus 173 ~~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~~~~~g~~~~~~~ti~~~l~~~~~~~~~~ 252 (353)
T PRK07409 173 VDALGDAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAAPIVRGEPVKNPETIATAIRIGNPASWDK 252 (353)
T ss_pred HHHhCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCChHhhCCcCCCCcceeeeeecCCCCCHHH
Confidence 999976799999999999999999999998743 49999999999876643221 111
Q ss_pred --eeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 224 --IFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 224 --~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
.+++...+.++.|+|+|+.+++++|+++++++++
T Consensus 253 ~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~egi~v~ 288 (353)
T PRK07409 253 AVAARDESGGLIDAVTDEEILEAYRLLARKEGVFCE 288 (353)
T ss_pred HHHHHHHhCCEEEEECHHHHHHHHHHHHHhCCceeC
Confidence 1133445679999999999999999999999875
No 49
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=4e-50 Score=357.29 Aligned_cols=225 Identities=23% Similarity=0.232 Sum_probs=194.4
Q ss_pred hhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHH
Q 025113 10 DVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAA 89 (257)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~ 89 (257)
.++.++|+|||++.+ +||+|+|++|||||||||++.++++++.+.|. ++|+++|+||+|.|+|++|+
T Consensus 51 ~vslgeG~TPLv~~~--------~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g~-----~~vv~aSsGN~g~slA~~aa 117 (338)
T PRK06450 51 FISLGEGRTPLIKKG--------NIWFKLDFLNPTGSYKDRGSVTLISYLAEKGI-----KQISEDSSGNAGASIAAYGA 117 (338)
T ss_pred CCCCCCCCCCceecC--------CEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC-----CEEEEECCcHHHHHHHHHHH
Confidence 588999999999975 69999999999999999999999999998774 67999999999999999999
Q ss_pred HcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHHh
Q 025113 90 ARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQ 169 (257)
Q Consensus 90 ~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ 169 (257)
.+|++++||||+++++.|+++++.+||+|+.+++ +++++.+. +++. +.+|++++.||.+ +.||+|+++||++
T Consensus 118 ~~G~~~~i~vP~~~~~~k~~~i~~~GA~vi~v~~--~~~~~~~~----a~~~-g~~~~~~~~np~~-ieG~kTia~EI~e 189 (338)
T PRK06450 118 AAGIEVKIFVPETASGGKLKQIESYGAEVVRVRG--SREDVAKA----AENS-GYYYASHVLQPQF-RDGIRTLAYEIAK 189 (338)
T ss_pred HcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHH----HHhc-CeEeccCCCCccH-HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999995 47765443 4444 7789999999998 7899999999999
Q ss_pred hhCC-CCCEEEEecCchhHHHHHHHHHHhcCC------CcEEEEEeCCCCcccc----CCC------------------c
Q 025113 170 DSGG-KVDAFISGIGTGGTVTGAGRFLKENNP------DIKVYGVEPSESAVLN----GGQ------------------R 220 (257)
Q Consensus 170 ql~~-~~d~iv~pvG~Gg~~aGi~~~~k~~~~------~~~vigv~~~~~~~~~----~~~------------------~ 220 (257)
|+++ .||+||+|+|+||+++|++++|+++.+ .+|+|+|||++++++. +.. |
T Consensus 190 ql~~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~p~~~a~~~~~~~~~~~~~tia~~l~~~~p 269 (338)
T PRK06450 190 DLDWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVSPLCAKFKGISYTPPDKVTSIADALVSTRP 269 (338)
T ss_pred HcCCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCCHHHHHhcCCCCCCCCCCCcceeeeecCCC
Confidence 9974 599999999999999999999998764 3899999999987664 110 1
Q ss_pred cc----ceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 221 GL----FIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 221 ~~----~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
.. ++.++.. ++++.|+|+|+.+|+++|++ ++++|+
T Consensus 270 ~~~~~~~~~i~~~-g~~v~V~d~ei~~a~~~La~-~Gi~ve 308 (338)
T PRK06450 270 FLLDYMVKALSEY-GECIVVSDNEIVEAWKELAK-KGLLVE 308 (338)
T ss_pred CCHHHHHHHHHhc-CcEEEECHHHHHHHHHHHHH-cCCEEC
Confidence 00 1223444 68999999999999999987 588764
No 50
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=3.7e-50 Score=365.65 Aligned_cols=238 Identities=23% Similarity=0.222 Sum_probs=210.5
Q ss_pred hhhcccCCCCceecccccCCCCc-eEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHH
Q 025113 10 DVTELIGNTPMVYLNNVVDGCVA-RIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (257)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~~~-~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a 88 (257)
.+++++|+|||++++.|+..+|. +||+|+|++|||||||||++.+++.++.++|. .+||++|+||||.|+|++|
T Consensus 60 ~v~l~~G~TPLv~~~~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g~-----~~vv~aSsGN~g~alA~~a 134 (397)
T PRK06260 60 IVSLNEGGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALELGV-----KTVACASTGNTSASLAAYA 134 (397)
T ss_pred cccCCCCCCCeEEchhhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHH
Confidence 58899999999999999887787 89999999999999999999999999999885 5799999999999999999
Q ss_pred HHcCCcEEEEeCCC-CCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHH
Q 025113 89 AARGYNLIIVMPST-CSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEI 167 (257)
Q Consensus 89 ~~~g~~~~i~vp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei 167 (257)
+.+|++++||||.+ +++.|+.+++.+||+|+.+++ +++++.+.+++++++. ++++++++ ||++ +.||.|+++||
T Consensus 135 a~~G~~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-g~y~~~~~-np~~-~~G~~t~a~Ei 209 (397)
T PRK06260 135 ARAGLKCYVLLPAGKVALGKLAQALLHGAKVLEVDG--NFDDALDMVVELAKEG-KIYLLNSI-NPFR-LEGQKTIGFEI 209 (397)
T ss_pred HHcCCcEEEEEeCCCccHHHHHHHHhcCCEEEEECC--cHHHHHHHHHHHHhhC-CEEeecCC-Cchh-hcchhhHHHHH
Confidence 99999999999997 789999999999999999995 5899999999998876 78888887 8888 78999999999
Q ss_pred HhhhCC-CCCEEEEecCchhHHHHHHHHHHhcCC------CcEEEEEeCCCCccccC----CC-----------------
Q 025113 168 WQDSGG-KVDAFISGIGTGGTVTGAGRFLKENNP------DIKVYGVEPSESAVLNG----GQ----------------- 219 (257)
Q Consensus 168 ~~ql~~-~~d~iv~pvG~Gg~~aGi~~~~k~~~~------~~~vigv~~~~~~~~~~----~~----------------- 219 (257)
++|+++ .||+||+|+|+||+++|++.+|+++.+ .+|||+||+.+++++.. +.
T Consensus 210 ~eQl~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~~~~~a~~~g~~~~~~~~~~~tia~~i~ 289 (397)
T PRK06260 210 ADQLGWEVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAAPIVEAIKKGKDEIEPVENPETVATAIR 289 (397)
T ss_pred HHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCcHHHHHHHcCCCcccccCCCCceeeeeE
Confidence 999976 699999999999999999999998763 37999999999876521 10
Q ss_pred ---ccc----ceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 220 ---RGL----FIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 220 ---~~~----~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
|.. +++++...++++.|+|+|+.+|++.|+++++++++
T Consensus 290 i~~p~~~~~~~~~l~~~~g~~v~V~d~e~~~a~~~la~~eGi~ve 334 (397)
T PRK06260 290 IGNPVNAPKALRAIRESGGTAEAVSDEEILDAQKLLARKEGIGVE 334 (397)
T ss_pred eCCCCCHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHhCCCeeC
Confidence 100 12345566789999999999999999999999875
No 51
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=5.3e-50 Score=356.14 Aligned_cols=239 Identities=22% Similarity=0.235 Sum_probs=211.4
Q ss_pred HhhhcccCCCCceecccccCCCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHH
Q 025113 9 RDVTELIGNTPMVYLNNVVDGCV-ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI 87 (257)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~~-~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~ 87 (257)
+++++++++|||+++++|+...+ .+||+|+|++|||||||||++.+++.++.++|. ++|+++|+||||.|+|++
T Consensus 14 ~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-----~~vv~~SsGN~g~alA~~ 88 (324)
T cd01563 14 DIVSLGEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELGV-----KAVACASTGNTSASLAAY 88 (324)
T ss_pred CcccCCCCCCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHH
Confidence 56889999999999999987665 699999999999999999999999999998873 679999999999999999
Q ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHH
Q 025113 88 AAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEI 167 (257)
Q Consensus 88 a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei 167 (257)
|+.+|+++++|||+++++.|+++|+.+||+|+.++. +++++.+.+++++++. ++|++|++|+.+ +.||.|++.||
T Consensus 89 a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~--~~~~~~~~a~~~~~~~--~~~~~~~~n~~~-~~g~~t~~~Ei 163 (324)
T cd01563 89 AARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEG--NFDDALRLVRELAEEN--WIYLSNSLNPYR-LEGQKTIAFEI 163 (324)
T ss_pred HHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEEECC--cHHHHHHHHHHHHHhc--CeeccCCCCcce-ecchhhhHHHH
Confidence 999999999999999999999999999999999995 5889999999998875 789999999999 67999999999
Q ss_pred HhhhCC-CCCEEEEecCchhHHHHHHHHHHhcC------CCcEEEEEeCCCCccccC----C------------------
Q 025113 168 WQDSGG-KVDAFISGIGTGGTVTGAGRFLKENN------PDIKVYGVEPSESAVLNG----G------------------ 218 (257)
Q Consensus 168 ~~ql~~-~~d~iv~pvG~Gg~~aGi~~~~k~~~------~~~~vigv~~~~~~~~~~----~------------------ 218 (257)
++|+++ .+|+||+|+|+||+++|++.++|.+. ++++||+|||.+++++.. +
T Consensus 164 ~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~t~~~gl~ 243 (324)
T cd01563 164 AEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAAPIVRAFKEGKDDIEPVENPETIATAIR 243 (324)
T ss_pred HHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCCCHHHHHHHcCCCccCcCCCCCceeeeee
Confidence 999963 69999999999999999999999875 579999999999865521 1
Q ss_pred --Cccc----ceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 219 --QRGL----FIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 219 --~~~~----~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
.+.. +++++.+.++++.|+|+|+.+++++|+++++++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~ 288 (324)
T cd01563 244 IGNPASGPKALRAVRESGGTAVAVSDEEILEAQKLLARTEGIFVE 288 (324)
T ss_pred cCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCceeC
Confidence 0111 12334566899999999999999999999999874
No 52
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=1.3e-49 Score=356.59 Aligned_cols=240 Identities=24% Similarity=0.278 Sum_probs=206.6
Q ss_pred hHhhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHH
Q 025113 8 KRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI 87 (257)
Q Consensus 8 ~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~ 87 (257)
..+++..+++|||++++.+++..|.+||+|+|++|||||||||++.+++.++.++|. .+||++|+||||+|+|++
T Consensus 19 ~~~~~l~~G~TPl~~l~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~alA~~ 93 (352)
T PRK06721 19 TPDVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEGS-----EAIICASTGNTSASAAAY 93 (352)
T ss_pred CCccccCcCCCCeeEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHH
Confidence 445788899999999999988778899999999999999999999999999998874 679999999999999999
Q ss_pred HHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHH
Q 025113 88 AAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPE 166 (257)
Q Consensus 88 a~~~g~~~~i~vp~~~-~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 166 (257)
|+.+|++|+||||++. ++.|+++++.+||+|+.+++ +++++.+.+++++++. ++++++ +.||.+ ..||.|+++|
T Consensus 94 aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~-~~n~~~-~~G~~t~~~E 168 (352)
T PRK06721 94 AARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEG--NFDDALKAVRNIAAEE-PITLVN-SVNPYR-IEGQKTAAFE 168 (352)
T ss_pred HHHCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhC-Cceecc-CCCchh-hhhhhhHHHH
Confidence 9999999999999974 78899999999999999994 5889999999998886 566665 568887 6799999999
Q ss_pred HHhhhCCCCCEEEEecCchhHHHHHH----HHHHhcC-CCcEEEEEeCCCCccccCCC----------------cccc--
Q 025113 167 IWQDSGGKVDAFISGIGTGGTVTGAG----RFLKENN-PDIKVYGVEPSESAVLNGGQ----------------RGLF-- 223 (257)
Q Consensus 167 i~~ql~~~~d~iv~pvG~Gg~~aGi~----~~~k~~~-~~~~vigv~~~~~~~~~~~~----------------~~~~-- 223 (257)
|++|+++.||+||+|+|+||+++|++ .++|..+ |+++||+|||.+++++..+. +..+
T Consensus 169 i~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~~~~~~~~g~~~~~~~tia~~l~~~~~~~~~~ 248 (352)
T PRK06721 169 ICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAAIVKGHVIDEPETIATAIRIGNPASWSY 248 (352)
T ss_pred HHHHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCChHhhCCcCCCCCceeeccccCCCCCHHH
Confidence 99999767999999999999999854 4556554 89999999999987664321 1111
Q ss_pred --eeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 224 --IFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 224 --~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
...+...++++.|+|+|+.+|+++|+++++++++
T Consensus 249 ~~~~~~~~~~~~~~V~d~e~~~a~~~la~~eGi~ve 284 (352)
T PRK06721 249 AVEAAEQSHGEIDMVSDEEILHAYRLLAKSEGVFAE 284 (352)
T ss_pred HHHHHHhcCCEEEEECHHHHHHHHHHHHHhcCcccC
Confidence 1134467899999999999999999999999875
No 53
>PLN02569 threonine synthase
Probab=100.00 E-value=5.2e-49 Score=363.20 Aligned_cols=242 Identities=15% Similarity=0.096 Sum_probs=208.2
Q ss_pred hhhcccCCCCceecccccCC-CCc-eEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHH
Q 025113 10 DVTELIGNTPMVYLNNVVDG-CVA-RIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI 87 (257)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~-~~~-~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~ 87 (257)
.+++++|+|||++++.|... .|. +||+|+|++|||||||||++.+++..+.+.|........|+++|+||+|.|+|++
T Consensus 126 ~vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAay 205 (484)
T PLN02569 126 IVSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAY 205 (484)
T ss_pred ceecCCCCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHHH
Confidence 37889999999999999877 774 8999999999999999999999999998876522112569999999999999999
Q ss_pred HHHcCCcEEEEeCCC-CCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHH
Q 025113 88 AAARGYNLIIVMPST-CSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPE 166 (257)
Q Consensus 88 a~~~g~~~~i~vp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 166 (257)
|+.+|++++||||++ .+..|+.+++.+||+|+.+++ +|+++++.+++++++. ++++++++ ||++ +.||+|+++|
T Consensus 206 aa~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g--~~d~a~~~a~e~~~~~-~~~~~n~~-Np~~-ieG~kT~a~E 280 (484)
T PLN02569 206 CAAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDT--DFDGCMRLIREVTAEL-PIYLANSL-NSLR-LEGQKTAAIE 280 (484)
T ss_pred HHhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEecCCC-Ccch-hHhHHHHHHH
Confidence 999999999999996 788999999999999999995 5999999999988877 68889988 9998 7899999999
Q ss_pred HHhhhCCC-CCEEEEecCchhHHHHHHHHHHhcC------CCcEEEEEeCCCCccccC----CC----------------
Q 025113 167 IWQDSGGK-VDAFISGIGTGGTVTGAGRFLKENN------PDIKVYGVEPSESAVLNG----GQ---------------- 219 (257)
Q Consensus 167 i~~ql~~~-~d~iv~pvG~Gg~~aGi~~~~k~~~------~~~~vigv~~~~~~~~~~----~~---------------- 219 (257)
|++|++++ ||+||+|+|+||+++|++.+|+++. +.+|+|+||+++++++.. +.
T Consensus 281 I~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~pl~~a~~~G~~~~~~~~~~~T~A~gi 360 (484)
T PLN02569 281 ILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANANPLYRAYKSGWEEFKPVKANPTFASAI 360 (484)
T ss_pred HHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCcHHHHHHHcCCCccccCCCCCccchhh
Confidence 99999765 9999999999999999999999863 457999999999877642 11
Q ss_pred ----ccc----ceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 220 ----RGL----FIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 220 ----~~~----~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
|.. ...++...+.++.|+|+|+.+|+++ +++++++++
T Consensus 361 ~i~~P~~~~~~l~al~~s~g~~v~VsDeEi~~a~~~-a~~~Gi~ve 405 (484)
T PLN02569 361 QIGDPVSIDRAVYALKESNGIVEEATEEELMDAQAE-ADKTGMFLC 405 (484)
T ss_pred ccCCCccHHHHHHHHHHhCCEEEEECHHHHHHHHHH-HHHCCcEEC
Confidence 000 0122334556899999999999999 999999875
No 54
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=4.9e-49 Score=352.31 Aligned_cols=229 Identities=21% Similarity=0.225 Sum_probs=202.8
Q ss_pred hhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHH
Q 025113 11 VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAA 90 (257)
Q Consensus 11 i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~ 90 (257)
++.++|.|||+++. .+||+|+|++|||||||||++.+++.++.+.|. .+||++|+||||+|+|++|++
T Consensus 58 ~sl~eg~Tpl~~~~-------~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~ 125 (347)
T PRK08329 58 PHLTPPITPTVKRS-------IKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGI-----NEVVIDSSGNAALSLALYSLS 125 (347)
T ss_pred CcCCCCCCccccCC-------CeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcCC-----CEEEEECCCcHHHHHHHHHHH
Confidence 68899999999973 389999999999999999999999999999875 679999999999999999999
Q ss_pred cCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHHhh
Q 025113 91 RGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQD 170 (257)
Q Consensus 91 ~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q 170 (257)
+|++++||||+++++.|+.+++.+||+|+.+++ +++++.+.+++++++. +++|++++.||.+ +.||+|+++||++|
T Consensus 126 ~G~~~~v~vp~~~~~~k~~~~~~~GA~v~~v~~--~~~~~~~~a~~l~~~~-~~~~~~~~~np~~-~eG~~t~~~Ei~eq 201 (347)
T PRK08329 126 EGIKVHVFVSYNASKEKISLLSRLGAELHFVEG--DRMEVHEEAVKFSKRN-NIPYVSHWLNPYF-LEGTKTIAYEIYEQ 201 (347)
T ss_pred cCCcEEEEECCCChHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCeeccCCCCchh-hccchhHHHHHHHH
Confidence 999999999999999999999999999999996 3777888888888875 7788999999998 78999999999999
Q ss_pred hCCCCCEEEEecCchhHHHHHHHHHHhcC------CCcEEEEEeCCCCccccCC--------------Cc-c---cceec
Q 025113 171 SGGKVDAFISGIGTGGTVTGAGRFLKENN------PDIKVYGVEPSESAVLNGG--------------QR-G---LFIFI 226 (257)
Q Consensus 171 l~~~~d~iv~pvG~Gg~~aGi~~~~k~~~------~~~~vigv~~~~~~~~~~~--------------~~-~---~~~i~ 226 (257)
++ .||+||+|+|+||+++|++++|+++. +.+++|+|||.++.++... .+ . .++++
T Consensus 202 l~-~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~~~~~~~~~~t~a~gi~i~~~~~~~~~~~~l 280 (347)
T PRK08329 202 IG-VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEGYESLCKRSKSENKLADGIAIPEPPRKEEMLRAL 280 (347)
T ss_pred cC-CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCchHHhccCCCCceeeeEEeCCCCCHHHHHHHH
Confidence 96 89999999999999999999999873 5689999999998766421 11 1 12456
Q ss_pred cccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 227 SYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 227 ~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
+.+.+.++.|+|+|+.+|+++|++ ++++++
T Consensus 281 ~~~~g~~~~V~d~e~~~a~~~l~~-~Gi~ve 310 (347)
T PRK08329 281 EESNGFCISVGEEETRAALHWLRR-MGFLVE 310 (347)
T ss_pred HHhCCEEEEECHHHHHHHHHHHHh-cCceEC
Confidence 677888999999999999999986 788774
No 55
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=3.6e-49 Score=358.49 Aligned_cols=250 Identities=20% Similarity=0.215 Sum_probs=210.2
Q ss_pred hhhhhHhh--hcccCCCCceecccccCCCC-ceEEEEeCCC-CCCCChhhHHHHHHHHHHHHc--CC-------------
Q 025113 4 NNAIKRDV--TELIGNTPMVYLNNVVDGCV-ARIAAKLETM-EPCSSVKDRIAYSMIKDAEDK--GL------------- 64 (257)
Q Consensus 4 ~~~~~~~i--~~~~~~TPl~~~~~l~~~~~-~~l~~K~E~~-~ptGS~K~R~a~~~~~~a~~~--g~------------- 64 (257)
+..+.+++ ....++|||++++.|+..+| .+||+|+|++ |||||||+|++.+.+.++..+ +.
T Consensus 29 ~~~a~~~~~~~~~~~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~ 108 (399)
T PRK08206 29 AKKARAFHQSFPGYAPTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSFEELTSG 108 (399)
T ss_pred HHHHHHHHhcCCCCCCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhh
Confidence 34567788 55899999999999998888 5999999997 599999999999988887632 21
Q ss_pred -CCC--CceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhC
Q 025113 65 -ITP--GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKT 141 (257)
Q Consensus 65 -~~~--g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~ 141 (257)
+.+ ...+|+++|+||||+|+|++|+.+|++|+||||..+++.|+..++.+||+|+.++. +++++++.+++++++.
T Consensus 109 ~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~ 186 (399)
T PRK08206 109 EVREKLGDITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITDG--NYDDSVRLAAQEAQEN 186 (399)
T ss_pred HHHHhccCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHHc
Confidence 000 01258999999999999999999999999999999999999999999999999995 5899999999988876
Q ss_pred CCeEEeC-----CCCC-CcchHhhHhhHHHHHHhhhCC---CCCEEEEecCchhHHHHHHHHHHhcC--CCcEEEEEeCC
Q 025113 142 PDGYLLR-----QFEN-PANPKIHYETTGPEIWQDSGG---KVDAFISGIGTGGTVTGAGRFLKENN--PDIKVYGVEPS 210 (257)
Q Consensus 142 ~~~~~~~-----~~~~-~~~~~~g~~t~~~Ei~~ql~~---~~d~iv~pvG~Gg~~aGi~~~~k~~~--~~~~vigv~~~ 210 (257)
+++|++ ||+| |.+++.||.|+++||++|+++ .||+||+|+|+||+++|++.+++++. +.++||+|||+
T Consensus 187 -g~~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~ 265 (399)
T PRK08206 187 -GWVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPD 265 (399)
T ss_pred -CCEEecCccccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCC
Confidence 788886 6765 666688999999999999965 59999999999999999999999984 47999999999
Q ss_pred CCccccC----CC-------------------cc--cceeccccCCeEEEeChHHHHHHHHHHHh----hcCeec
Q 025113 211 ESAVLNG----GQ-------------------RG--LFIFISYLFRSFVLVDDGAVVHLHNYLLL----HIFTLV 256 (257)
Q Consensus 211 ~~~~~~~----~~-------------------~~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~----~~~~~v 256 (257)
+++++.. +. ++ .+++.+.+.|+++.|+|+|+.+|+++|++ ++++++
T Consensus 266 gs~~l~~s~~~g~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~gi~v 340 (399)
T PRK08206 266 QADCLYQSAVDGKPVAVTGDMDTIMAGLACGEPNPLAWEILRNCADAFISCPDEVAALGMRILANPLGGDPPIVS 340 (399)
T ss_pred CCchHHHHHHcCCcEEeCCCCCceeccCCCCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHhcccCCCCCeee
Confidence 9877631 11 00 12334567899999999999999999996 677776
No 56
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=5.6e-49 Score=362.31 Aligned_cols=235 Identities=19% Similarity=0.183 Sum_probs=206.1
Q ss_pred hhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHH
Q 025113 10 DVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAA 89 (257)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~ 89 (257)
.++.++|+|||++++ ++..+|.+||+|+|++|||||||||++.+++.+|.+.|. .+|+++|+||||.|+|++|+
T Consensus 59 ~v~l~~G~TPLv~~~-~~~~~g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa 132 (442)
T PRK05638 59 IISLGEGGTPLIRAR-ISEKLGENVYIKDETRNPTGSFRDRLATVAVSYGLPYAA-----NGFIVASDGNAAASVAAYSA 132 (442)
T ss_pred ccccCCCCCcEEccc-chHHhCCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcCC-----CEEEEeCCChHHHHHHHHHH
Confidence 378899999999994 666677899999999999999999999999999998864 67999999999999999999
Q ss_pred HcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHHh
Q 025113 90 ARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQ 169 (257)
Q Consensus 90 ~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ 169 (257)
.+|++|+||||+++++.|+.+++.+||+|+.+++ +++++.+.+++++++. +++++++++||.+ +.||+|+++||++
T Consensus 133 ~~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-~~~~~~~~~np~~-~eG~~t~a~Ei~e 208 (442)
T PRK05638 133 RAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYGE--SVDEAIEYAEELARLN-GLYNVTPEYNIIG-LEGQKTIAFELWE 208 (442)
T ss_pred HcCCCEEEEEeCCCCHHHHHHHHhcCcEEEEECC--CHHHHHHHHHHHHHhC-CeEecCCCCChhH-hhhHHHHHHHHHH
Confidence 9999999999999999999999999999999984 5899999999988776 8999999999998 7899999999999
Q ss_pred hhCCCCCEEEEecCchhHHHHHHHHHHhcCC------CcEEEEEeCCCCccccC----CC---------------cc---
Q 025113 170 DSGGKVDAFISGIGTGGTVTGAGRFLKENNP------DIKVYGVEPSESAVLNG----GQ---------------RG--- 221 (257)
Q Consensus 170 ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~------~~~vigv~~~~~~~~~~----~~---------------~~--- 221 (257)
|++ ||+||+|+|+||+++|++.+|+++.+ .++||+|||++++++.. +. |.
T Consensus 209 q~~--pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~p~~~~~~~~~~~~~~t~a~gl~~~~p~~~~ 286 (442)
T PRK05638 209 EIN--PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERCNPIASEILGNKTKCNETKALGLYVKNPVMKE 286 (442)
T ss_pred HHC--cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCCCHHHHHHhcCCCCCCCceeeeEeeCCCCCHH
Confidence 995 99999999999999999999999865 37999999998877641 11 10
Q ss_pred -cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 222 -LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 222 -~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
..++++...+.++.|+|+++.+++++|.+ ++++++
T Consensus 287 ~~~~~i~~~~g~~~~v~d~~i~~a~~~l~~-eGi~~e 322 (442)
T PRK05638 287 YVSEAIKESGGTAVVVNEEEIMAGEKLLAK-EGIFAE 322 (442)
T ss_pred HHHHHHHHhCCEEEEECHHHHHHHHHHHHh-cCceec
Confidence 01234555778999999999999998875 688764
No 57
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=5.9e-48 Score=330.11 Aligned_cols=213 Identities=40% Similarity=0.562 Sum_probs=199.9
Q ss_pred CCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEE
Q 025113 18 TPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLII 97 (257)
Q Consensus 18 TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i 97 (257)
|||++++.++...+.+||+|+|++|||||||||++.+++..+.+.|.+ |+ ..|+++|+||+|.|+|++|+.+|+++++
T Consensus 1 TPl~~~~~l~~~~~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~-~~-~~vv~~ssGN~g~alA~~a~~~g~~~~v 78 (244)
T cd00640 1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKL-PK-GVIIESTGGNTGIALAAAAARLGLKCTI 78 (244)
T ss_pred CCeeEccccccccCCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCC-CC-CEEEEeCCcHHHHHHHHHHHHcCCCEEE
Confidence 899999999887778999999999999999999999999999998865 33 5699999999999999999999999999
Q ss_pred EeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHHhhhCC-CCC
Q 025113 98 VMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGG-KVD 176 (257)
Q Consensus 98 ~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~-~~d 176 (257)
|+|.+.++.++++++.+|++|+.++++ ++++.+.+++++++.++++|++||.|+.+ +.|+.++++||++|+++ .||
T Consensus 79 ~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~n~~~-~~g~~~~~~Ei~~q~~~~~~d 155 (244)
T cd00640 79 VMPEGASPEKVAQMRALGAEVVLVPGD--FDDAIALAKELAEEDPGAYYVNQFDNPAN-IAGQGTIGLEILEQLGGQKPD 155 (244)
T ss_pred EECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhCCCCEecCCCCCHHH-HHHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999964 89999999999998668999999999988 67888999999999976 599
Q ss_pred EEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCcccceeccccCCeEEEeChHHHHHHHHHHHhhcCeec
Q 025113 177 AFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLV 256 (257)
Q Consensus 177 ~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~~~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v 256 (257)
+||+|+|+||+++|++.+++...|.++||+||| +++.|+|+|+.++++.|++++++++
T Consensus 156 ~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~----------------------~~~~v~d~~~~~a~~~l~~~~gi~~ 213 (244)
T cd00640 156 AVVVPVGGGGNIAGIARALKELLPNVKVIGVEP----------------------EVVTVSDEEALEAIRLLAREEGILV 213 (244)
T ss_pred EEEEecCccHHHHHHHHHHHHhCCCCEEEEEee----------------------eEEEECHHHHHHHHHHHHHHcCceE
Confidence 999999999999999999999999999999999 7999999999999999999999987
Q ss_pred C
Q 025113 257 C 257 (257)
Q Consensus 257 ~ 257 (257)
+
T Consensus 214 ~ 214 (244)
T cd00640 214 E 214 (244)
T ss_pred C
Confidence 5
No 58
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=6.9e-47 Score=340.51 Aligned_cols=247 Identities=18% Similarity=0.208 Sum_probs=206.5
Q ss_pred hhhhHhhhcccCCCCceecccccCCCC-ceEEEEeCCCCC-CCChhhHHHHHHHHHHHHc----------------CCCC
Q 025113 5 NAIKRDVTELIGNTPMVYLNNVVDGCV-ARIAAKLETMEP-CSSVKDRIAYSMIKDAEDK----------------GLIT 66 (257)
Q Consensus 5 ~~~~~~i~~~~~~TPl~~~~~l~~~~~-~~l~~K~E~~~p-tGS~K~R~a~~~~~~a~~~----------------g~~~ 66 (257)
...+.++..+ .+|||++++.|++.+| .+||+|+|++|+ |||||+|++.+.+..+.++ +.++
T Consensus 11 ~~~~~~~~~~-~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (376)
T TIGR01747 11 LAFHKKIPGY-RPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIG 89 (376)
T ss_pred HHHHHhCCCC-CCCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHH
Confidence 3456677555 9999999999998888 489999999985 8999999999999887553 1211
Q ss_pred C--CceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCe
Q 025113 67 P--GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDG 144 (257)
Q Consensus 67 ~--g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (257)
+ +..+|+++|+||||+|+|++|+.+|++|+||||+++++.|+..++.+||+|+.+++ +++++.+.+++++++. ++
T Consensus 90 ~~~~~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v~~--~~~~a~~~a~~~~~~~-g~ 166 (376)
T TIGR01747 90 EKMGQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDM--NYDDTVRLAMQMAQQH-GW 166 (376)
T ss_pred hhcCCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-Cc
Confidence 1 24679999999999999999999999999999999999999999999999999995 5999999999998876 68
Q ss_pred EEeC-----CCCC--CcchHhhHhhHHHHHHhhhCC----CCCEEEEecCchhHHHHHHHHHHhcCC-C-cEEEEEeCCC
Q 025113 145 YLLR-----QFEN--PANPKIHYETTGPEIWQDSGG----KVDAFISGIGTGGTVTGAGRFLKENNP-D-IKVYGVEPSE 211 (257)
Q Consensus 145 ~~~~-----~~~~--~~~~~~g~~t~~~Ei~~ql~~----~~d~iv~pvG~Gg~~aGi~~~~k~~~~-~-~~vigv~~~~ 211 (257)
++++ +|+| |.. +.||+|+++||++|+++ .||+||+|+|+||+++|++.+++++.+ + ++||+|||.+
T Consensus 167 ~~~~~~~~~~~~~~~~~i-i~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~g 245 (376)
T TIGR01747 167 VVVQDTAWEGYEKIPTWI-MQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDK 245 (376)
T ss_pred EEeccccccccccCCchH-HHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCC
Confidence 8876 4655 333 78999999999999952 699999999999999999999987644 3 7999999999
Q ss_pred CccccC------CC-------------------c--ccceeccccCCeEEEeChHHHHHHHHHHHhhc----Ceec
Q 025113 212 SAVLNG------GQ-------------------R--GLFIFISYLFRSFVLVDDGAVVHLHNYLLLHI----FTLV 256 (257)
Q Consensus 212 ~~~~~~------~~-------------------~--~~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~----~~~v 256 (257)
++++.. +. + ..+++++...+++++|+|+||.+|+++|+++. ++++
T Consensus 246 a~~~~~s~~~~~g~~~~~~~~~~Tiadgl~~~~~~~~~~~~~~~~~~~~v~V~D~ei~~A~~~L~~~~g~~~~i~~ 321 (376)
T TIGR01747 246 ADCLYQSAVKKDGDIVNVGGDMATIMAGLACGEPNPISWEILRNCTSQFISAQDSVAAKGMRVLGAPYGGDPRIIS 321 (376)
T ss_pred CCHHHHHHHhcCCCeEEcCCCccccccccccCCcchHHHHHHHhcCCEEEEcCHHHHHHHHHHHhcccCCCCeEee
Confidence 987631 11 1 12455677889999999999999999999854 5665
No 59
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=9.7e-47 Score=335.75 Aligned_cols=239 Identities=19% Similarity=0.150 Sum_probs=204.7
Q ss_pred HhhhcccCCCCceecccccCCCCc-eEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHH
Q 025113 9 RDVTELIGNTPMVYLNNVVDGCVA-RIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI 87 (257)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~~~-~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~ 87 (257)
+.++..+++|||+++++++...+. +||+|+|++|||||||||++.+++.++.++|. .+|+++|+||||+|+|++
T Consensus 15 ~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~-----~~vv~aSsGN~g~a~A~~ 89 (328)
T TIGR00260 15 DLVDLGEGVTPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALTKALELGN-----DTVLCASTGNTGAAAAAY 89 (328)
T ss_pred hhhhhccCCccCccchHHHHhcCCccEEehhhccCCchhhHhhhHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHH
Confidence 357788999999999998877776 99999999999999999999999999998874 579999999999999999
Q ss_pred HHHcCCcEEEEeCCC-CCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCC--CcchHhhHhhHH
Q 025113 88 AAARGYNLIIVMPST-CSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFEN--PANPKIHYETTG 164 (257)
Q Consensus 88 a~~~g~~~~i~vp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~t~~ 164 (257)
|+.+|++++||||+. +++.|+..++.+||+|+.+++ +++++.+.+++++++. +.+++++ .| |.+ +.||.|++
T Consensus 90 a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~--~~~~~~~~~~~~~~~~-~~~~~~~-~n~~~~~-~~g~~t~~ 164 (328)
T TIGR00260 90 AGKAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDG--NFDDAQRLVKQLFGDK-EALGLNS-VNSIPYR-LEGQKTYA 164 (328)
T ss_pred hccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecC--CHHHHHHHHHHHHhhc-Ceeeccc-CCCCCeE-eeeehhHH
Confidence 999999999999998 899999999999999999995 5899999999988876 4555554 44 777 67889999
Q ss_pred HHHHhhhCC-CCCEEEEecCchhHHHHHHHHHHhcCC-----CcEEEEEeCCCCcccc-----CCC--------------
Q 025113 165 PEIWQDSGG-KVDAFISGIGTGGTVTGAGRFLKENNP-----DIKVYGVEPSESAVLN-----GGQ-------------- 219 (257)
Q Consensus 165 ~Ei~~ql~~-~~d~iv~pvG~Gg~~aGi~~~~k~~~~-----~~~vigv~~~~~~~~~-----~~~-------------- 219 (257)
+||++|+++ .||+||+|+|+||+++|++.+|+++.. .+++++|||.+++++. ++.
T Consensus 165 ~Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p~v~~Ve~~~~~~~~~~~~~~g~~~~~~~~~t~~~~l 244 (328)
T TIGR00260 165 FEAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLPVKRGIQAEGAADIVRAFLESGQWEPIEDPATLSTAI 244 (328)
T ss_pred HHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCCceeEEEcCCCChHHHHHHcCCCcCcCCCCCccCcce
Confidence 999999974 799999999999999999999997511 2399999999985442 111
Q ss_pred ----ccc----ceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 220 ----RGL----FIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 220 ----~~~----~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
|.. +++++.+.++++.|+|+|+.+++++|+++++++++
T Consensus 245 ~~~~p~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~ 290 (328)
T TIGR00260 245 DIGNPANWERALELFRRSNGNAEDVSDEEILEAIKLLAREEGYFVE 290 (328)
T ss_pred ecCCCCCHHHHHHHHHhcCCcEEecCHHHHHHHHHHHHHhcCeeEC
Confidence 110 12334577899999999999999999999999985
No 60
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=6.8e-46 Score=336.16 Aligned_cols=246 Identities=18% Similarity=0.178 Sum_probs=201.0
Q ss_pred hhHhhhcccCCCCceecccccCCCC-ceEEEEeCCCCC-CCChhhHHHHHHHHHHHH--cCC--------------CC--
Q 025113 7 IKRDVTELIGNTPMVYLNNVVDGCV-ARIAAKLETMEP-CSSVKDRIAYSMIKDAED--KGL--------------IT-- 66 (257)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~~-~~l~~K~E~~~p-tGS~K~R~a~~~~~~a~~--~g~--------------~~-- 66 (257)
.+.++. .+.+|||++++.|++..| .+||+|+|++|+ |||||+||+.+.+..+.+ .|. .+
T Consensus 32 ~~~~~~-~~~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~ 110 (396)
T TIGR03528 32 FHQSFP-GYQPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREK 110 (396)
T ss_pred HHhcCC-CCcCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhh
Confidence 344553 559999999999998888 599999999885 999999999999988633 221 00
Q ss_pred CCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEE
Q 025113 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYL 146 (257)
Q Consensus 67 ~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (257)
....+||++|+||||+|+|++|+.+|++|+||||.++++.|+..++.+||+|+.++. +++++.+.+++++++. +++|
T Consensus 111 ~~~~~vv~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~~~--~~~~a~~~a~~~a~~~-g~~~ 187 (396)
T TIGR03528 111 LGDITFVTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTITDL--NYDDAVRLAWKMAQEN-GWVM 187 (396)
T ss_pred ccCcEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CcEe
Confidence 012379999999999999999999999999999999999999999999999999994 5899999999998876 7888
Q ss_pred eC-----CCCCCc-chHhhHhhHHHHHHhhhC----CCCCEEEEecCchhHHHHHHHHHHhc-CCC-cEEEEEeCCCCcc
Q 025113 147 LR-----QFENPA-NPKIHYETTGPEIWQDSG----GKVDAFISGIGTGGTVTGAGRFLKEN-NPD-IKVYGVEPSESAV 214 (257)
Q Consensus 147 ~~-----~~~~~~-~~~~g~~t~~~Ei~~ql~----~~~d~iv~pvG~Gg~~aGi~~~~k~~-~~~-~~vigv~~~~~~~ 214 (257)
++ +|+|.. ..+.||+|+++||++|++ +.||+||+|+|+||+++|++.+++++ .++ ++||+|||+++++
T Consensus 188 v~~~~~~~~~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~~ 267 (396)
T TIGR03528 188 VQDTAWEGYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPDAADC 267 (396)
T ss_pred eccccccccccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCch
Confidence 85 576532 235799999999999996 26999999999999999999989554 444 5999999999887
Q ss_pred ccC------CC-------------------cc--cceeccccCCeEEEeChHHHHHHHHHHHh----hcCeec
Q 025113 215 LNG------GQ-------------------RG--LFIFISYLFRSFVLVDDGAVVHLHNYLLL----HIFTLV 256 (257)
Q Consensus 215 ~~~------~~-------------------~~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~----~~~~~v 256 (257)
+.. +. |+ .+++++.+.|+++.|+|+|+.+|+++|++ ++++++
T Consensus 268 l~~s~~~~~g~~~~~~g~~~Tiadgl~~~~p~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~~~~~ 340 (396)
T TIGR03528 268 LYRSAIADDGKPHFVTGDMATIMAGLACGEPNTIGWEILRDYASQFISCPDWVAAKGMRILGNPLKGDPRVIS 340 (396)
T ss_pred HHHHHHhcCCCEEEeCCCccceecccccCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHhcccCCCCceee
Confidence 632 11 00 12344567899999999999999999998 567665
No 61
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=1.5e-44 Score=326.39 Aligned_cols=242 Identities=20% Similarity=0.211 Sum_probs=194.6
Q ss_pred hhcccC-CCCceecccccCCC-CceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHH
Q 025113 11 VTELIG-NTPMVYLNNVVDGC-VARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (257)
Q Consensus 11 i~~~~~-~TPl~~~~~l~~~~-~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a 88 (257)
...+++ +|||+++++|++.+ +.+||+|+|++|||||||+|.+...+..+.+.|+ ...|+++|+||||+|+|++|
T Consensus 55 ~~~~~g~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~G~----~~vI~etgsGnhG~A~A~aa 130 (402)
T PRK13028 55 LKHYVGRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGK----KRLIAETGAGQHGVATATAA 130 (402)
T ss_pred HHHhCCCCCCeeehHHhHhhcCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHH
Confidence 345565 89999999999888 5799999999999999999999999999998885 24456789999999999999
Q ss_pred HHcCCcEEEEeCCCCCH---HHHHHHHHCCCEEEEECC-CCCHHHHHHHHHH-HHHhCCCeEEeCCC-C--C--CcchHh
Q 025113 89 AARGYNLIIVMPSTCSM---ERRIVLRALGAEIILADS-ALRFEEILEKGEE-ILKKTPDGYLLRQF-E--N--PANPKI 158 (257)
Q Consensus 89 ~~~g~~~~i~vp~~~~~---~~~~~l~~~Ga~v~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~--~--~~~~~~ 158 (257)
+.+|++|+||||....+ .++..|+.+||+|+.++. ..+++++.+.+.+ ++++.++.+|+.+. . + |.++..
T Consensus 131 a~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~ 210 (402)
T PRK13028 131 ALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRD 210 (402)
T ss_pred HHcCCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHH
Confidence 99999999999985433 567899999999999984 3578898888744 56654456666322 1 2 334456
Q ss_pred hHhhHHHHHHhhh----CCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCC--------CccccCCCcc-----
Q 025113 159 HYETTGPEIWQDS----GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSE--------SAVLNGGQRG----- 221 (257)
Q Consensus 159 g~~t~~~Ei~~ql----~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~--------~~~~~~~~~~----- 221 (257)
|+++++.|+.+|+ +..||+||+|+|+||+++|++.+|++ .++++||||||.+ ++++..+.++
T Consensus 211 ~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~aa~l~~g~~g~~~g~ 289 (402)
T PRK13028 211 FQSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLD-DESVRLVGVEPAGRGLDLGEHAATLTLGKPGVIHGF 289 (402)
T ss_pred HhHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHh-CCCceEEEEecCCCCcccccccccccCCCcceeccc
Confidence 9999999999997 33699999999999999999999986 4889999999998 6666443321
Q ss_pred --------------cce----------------eccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 222 --------------LFI----------------FISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 222 --------------~~~----------------i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
.+. +.....++++.|+|+|+.+|++.|++++++++.
T Consensus 290 ~~~~l~~~~g~~~~~~sia~gl~~~~vgp~~~~l~~~~~~~~v~VtD~eal~a~~~La~~eGIi~~ 355 (402)
T PRK13028 290 KSYVLQDEDGEPAPVHSIAAGLDYPGVGPEHAYLKDIGRVEYVTATDEEALDAFFLLSRTEGIIPA 355 (402)
T ss_pred ceeeccccCCCcCCccceeccccCCCCCHHHHHHHHhcCcEEEEECHHHHHHHHHHHHHhcCCeec
Confidence 011 112234689999999999999999999999863
No 62
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=9e-45 Score=328.52 Aligned_cols=241 Identities=19% Similarity=0.201 Sum_probs=190.6
Q ss_pred hhccc-CCCCceecccccCCCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHH
Q 025113 11 VTELI-GNTPMVYLNNVVDGCV-ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (257)
Q Consensus 11 i~~~~-~~TPl~~~~~l~~~~~-~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a 88 (257)
+..++ ++|||+++++|++.+| .+||+|+|++|||||||+|++..++..+.+.|. ...|+++|+||||+|+|++|
T Consensus 43 ~~~~~~~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R~a~~~~~~a~~~g~----~~vi~e~ssGN~G~alA~~a 118 (385)
T TIGR00263 43 LRNYAGRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----KRIIAETGAGQHGVATATAA 118 (385)
T ss_pred HHHhCCCCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHHHHHHHHHHHHHcCC----CEEEEEcCcHHHHHHHHHHH
Confidence 33444 4999999999988777 799999999999999999999999999988774 24455799999999999999
Q ss_pred HHcCCcEEEEeCCC-CCH--HHHHHHHHCCCEEEEECCC-CCHHHHH-HHHHHHHHhCCCeEEe-CCCCC----CcchHh
Q 025113 89 AARGYNLIIVMPST-CSM--ERRIVLRALGAEIILADSA-LRFEEIL-EKGEEILKKTPDGYLL-RQFEN----PANPKI 158 (257)
Q Consensus 89 ~~~g~~~~i~vp~~-~~~--~~~~~l~~~Ga~v~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~----~~~~~~ 158 (257)
+.+|++|+||||+. .+. .++++|+.+||+|+.++.. +.++++. +.+++++++.++.+|+ +++.| +.++..
T Consensus 119 ~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~~ 198 (385)
T TIGR00263 119 ALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVRD 198 (385)
T ss_pred HHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHHH
Confidence 99999999999985 443 5788999999999999853 4577764 4455566665556666 44433 245568
Q ss_pred hHhhHHHHHHhhhC----CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCc--------cccCCCcc-----
Q 025113 159 HYETTGPEIWQDSG----GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESA--------VLNGGQRG----- 221 (257)
Q Consensus 159 g~~t~~~Ei~~ql~----~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~--------~~~~~~~~----- 221 (257)
|++|+++||++|+. ..||+||+|+|+||+++|++.++.. .|+++||||||.++. ++..+.+.
T Consensus 199 ~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~-~~~~~iigVe~~gs~~~~~~~~~~~~~g~~~~~~~~ 277 (385)
T TIGR00263 199 FQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFID-DPSVQLIGVEAGGLGIDTDKHAATLAKGSPGVLHGM 277 (385)
T ss_pred HhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhh-CCCCeEEEEEeCCCcccchhhhhhhhcCCeeEecCc
Confidence 99999999999973 2589999999999999999998855 699999999999852 22222110
Q ss_pred ------------------------------cceeccccCCeEEEeChHHHHHHHHHHHhhcCeec
Q 025113 222 ------------------------------LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLV 256 (257)
Q Consensus 222 ------------------------------~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v 256 (257)
.+.+.....++++.|+|+|+.++++.|++++++++
T Consensus 278 ~~~~~~~~~~~~~~~~tia~gl~~~~~~p~~~~~~~~~~~~~v~Vsd~e~~~a~~~la~~egi~~ 342 (385)
T TIGR00263 278 KTYLLQDEDGQILEAHSVSAGLDYPGVGPEHAYLHETGRATYEAITDDEALEAFKLLSRNEGIIP 342 (385)
T ss_pred ccccccCCCCcccccceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHhcCCee
Confidence 01122334568999999999999999999999986
No 63
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=2.8e-45 Score=326.58 Aligned_cols=247 Identities=22% Similarity=0.173 Sum_probs=205.2
Q ss_pred hhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCC--CChhhHHHHHHHHHHHHcCCCCCCceEEEEeC--CChH
Q 025113 5 NAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPC--SSVKDRIAYSMIKDAEDKGLITPGKTTLIEVT--SGNT 80 (257)
Q Consensus 5 ~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~pt--GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~s--sGN~ 80 (257)
+..+++++..+++|||++++.|+...|.+||+|+|++||+ ||||+|++.+++.++.+.|. ++||+++ +|||
T Consensus 3 ~~~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~-----~~vvt~g~s~gN~ 77 (331)
T PRK03910 3 LARFPRLELAGLPTPLEPLPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGA-----DTLITAGAIQSNH 77 (331)
T ss_pred cCcCCCccccCCCCCceEhhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCC-----CEEEEcCcchhHH
Confidence 3456778899999999999998877788999999999997 59999999999999998874 5678764 5899
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCCH--------HHHHHHHHCCCEEEEECCCCCHHH-HHHHHHHHHHhCCCeE-EeCCC
Q 025113 81 GVGLAFIAAARGYNLIIVMPSTCSM--------ERRIVLRALGAEIILADSALRFEE-ILEKGEEILKKTPDGY-LLRQF 150 (257)
Q Consensus 81 ~~alA~~a~~~g~~~~i~vp~~~~~--------~~~~~l~~~Ga~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~ 150 (257)
|+|+|++|+.+|++++||||...++ .++..++.+||+|+.++.+++..+ +...++++.++.+..+ +..++
T Consensus 78 g~alA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~ 157 (331)
T PRK03910 78 ARQTAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGG 157 (331)
T ss_pred HHHHHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCC
Confidence 9999999999999999999998765 456899999999999996433333 3455666766543333 45677
Q ss_pred CCCcchHhhHhhHHHHHHhhhCC---CCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----------
Q 025113 151 ENPANPKIHYETTGPEIWQDSGG---KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG---------- 217 (257)
Q Consensus 151 ~~~~~~~~g~~t~~~Ei~~ql~~---~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~---------- 217 (257)
.|+.+ ..|+.+++.||++|+++ +||+||+|+|||||++|++.+|+++.|+++||||||.+++.+..
T Consensus 158 ~~~~~-~~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~~ 236 (331)
T PRK03910 158 SNALG-ALGYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAAEQEPKVAKLAQAT 236 (331)
T ss_pred CCchh-HHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHH
Confidence 88888 56888999999999963 69999999999999999999999999999999999998755321
Q ss_pred ----CC-----cccceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 218 ----GQ-----RGLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 218 ----~~-----~~~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
+. +..+.+.+.+.++.+.|+|+|+.+++++|+++++++++
T Consensus 237 a~~~g~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~e 285 (331)
T PRK03910 237 AELLGLPTEIPRADIRLWDDYVGPGYGVPTDEMLEAVKLLARTEGILLD 285 (331)
T ss_pred HHHcCCCccCCcccEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCccc
Confidence 11 11235667788999999999999999999999999875
No 64
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=2.4e-44 Score=324.62 Aligned_cols=241 Identities=19% Similarity=0.229 Sum_probs=190.7
Q ss_pred hhcccC-CCCceecccccCCC-CceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHH
Q 025113 11 VTELIG-NTPMVYLNNVVDGC-VARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (257)
Q Consensus 11 i~~~~~-~TPl~~~~~l~~~~-~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a 88 (257)
...++| +|||+++++|++.+ +.+||+|+|++|||||||+|++...+..|.+.|+ ...|+++|+||||.|+|++|
T Consensus 51 ~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~Gk----~~vIaetgaGnhG~A~A~~a 126 (397)
T PRK04346 51 LKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVLGQALLAKRMGK----KRIIAETGAGQHGVATATAA 126 (397)
T ss_pred HHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHH
Confidence 345566 69999999999888 5799999999999999999999999999999886 34456689999999999999
Q ss_pred HHcCCcEEEEeCCC-CC--HHHHHHHHHCCCEEEEECC-CCCHHHHHHHHHH-HHHhCCCeEEe-CCCCC----CcchHh
Q 025113 89 AARGYNLIIVMPST-CS--MERRIVLRALGAEIILADS-ALRFEEILEKGEE-ILKKTPDGYLL-RQFEN----PANPKI 158 (257)
Q Consensus 89 ~~~g~~~~i~vp~~-~~--~~~~~~l~~~Ga~v~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~----~~~~~~ 158 (257)
+++|++|+||||.. .+ ..++.+|+.+||+|+.++. ..+++++.+.+.+ +.++.++.+|+ .+..+ |.+...
T Consensus 127 a~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~ 206 (397)
T PRK04346 127 ALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRD 206 (397)
T ss_pred HHcCCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHH
Confidence 99999999999985 33 3577889999999999984 4467777665544 56654455555 33322 234356
Q ss_pred hHhhHHHHHHhhhC----CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCc--------cccCCCcc-----
Q 025113 159 HYETTGPEIWQDSG----GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESA--------VLNGGQRG----- 221 (257)
Q Consensus 159 g~~t~~~Ei~~ql~----~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~--------~~~~~~~~----- 221 (257)
||+|++.||.+|+. ..||+||+|+|+||+++|++.+|++ .|+++||||||.++. ++..+.++
T Consensus 207 ~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g~~~g~ 285 (397)
T PRK04346 207 FQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGLETGKHAATLTKGRPGVLHGA 285 (397)
T ss_pred hcchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhh-CCCCeEEEEecCCCccccccccchhhcCCeeeeccc
Confidence 99999999999973 3699999999999999999999975 789999999999852 22211111
Q ss_pred --------------cc----------------eeccccCCeEEEeChHHHHHHHHHHHhhcCeec
Q 025113 222 --------------LF----------------IFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLV 256 (257)
Q Consensus 222 --------------~~----------------~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v 256 (257)
.+ .+.....++++.|+|+|+.+|+++|+++++++.
T Consensus 286 ~~~~~~~~~g~~~~~~sis~gL~~pgvgp~~~~l~~~~~~~~v~VtD~eal~a~~~L~~~eGIi~ 350 (397)
T PRK04346 286 KTYLLQDEDGQILETHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDDEALEAFQLLSRLEGIIP 350 (397)
T ss_pred cceecccCCCccCCCceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCEe
Confidence 01 112334568999999999999999999999984
No 65
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=1.7e-44 Score=319.06 Aligned_cols=237 Identities=20% Similarity=0.170 Sum_probs=194.5
Q ss_pred ccCCCCceecccccCCCCceEEEEeCCCCCC--CChhhHHHHHHHHHHHHcCCCCCCceEEEEe--CCChHHHHHHHHHH
Q 025113 14 LIGNTPMVYLNNVVDGCVARIAAKLETMEPC--SSVKDRIAYSMIKDAEDKGLITPGKTTLIEV--TSGNTGVGLAFIAA 89 (257)
Q Consensus 14 ~~~~TPl~~~~~l~~~~~~~l~~K~E~~~pt--GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--ssGN~~~alA~~a~ 89 (257)
...+|||++++.|+...+.+||+|+|++||+ ||||+|++.+++.++.++|. +.||++ |+||||+|+|++|+
T Consensus 4 ~~~~TPl~~~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~-----~~vv~~g~ssGN~g~alA~~a~ 78 (311)
T TIGR01275 4 IPWPTPIQYLPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGA-----DTVITVGAIQSNHARATALAAK 78 (311)
T ss_pred CCCCCcceechhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCC-----CEEEEcCCchhHHHHHHHHHHH
Confidence 4579999999998887888999999999998 99999999999999999885 678887 66999999999999
Q ss_pred HcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHH----hCC-CeEEeCCCCCCcchHhhHhhH
Q 025113 90 ARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSALRFEEILEKGEEILK----KTP-DGYLLRQFENPANPKIHYETT 163 (257)
Q Consensus 90 ~~g~~~~i~vp~~~-~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~g~~t~ 163 (257)
.+|+++++|||... +..+...++.+||+|+.++.. ++.+..+.++++++ +.+ ..++++++.||.+ ..|+.++
T Consensus 79 ~~G~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~g~~~~ 156 (311)
T TIGR01275 79 KLGLDAVLVLREKEELNGNLLLDKLMGAETRVYSAE-EYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLG-TLGYVEA 156 (311)
T ss_pred HhCCceEEEecCCccCCCCHHHHHHcCCEEEEECch-hhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHH-HHHHHHH
Confidence 99999999999865 455677789999999999852 34444444444433 322 3456688889888 5566779
Q ss_pred HHHHHhhhCC--CCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccc-c------------C-CC--ccccee
Q 025113 164 GPEIWQDSGG--KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVL-N------------G-GQ--RGLFIF 225 (257)
Q Consensus 164 ~~Ei~~ql~~--~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~-~------------~-~~--~~~~~i 225 (257)
++||++|+++ +||+||+|+|||||++|++.+||+++|+++|||||+..+.+. . + +. ...+++
T Consensus 157 ~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 236 (311)
T TIGR01275 157 VLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRFGEDMTDKFVNLVKEIAEGLEVKASEVIPE 236 (311)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHHHHHHHHHHHhCCCCCCCEEE
Confidence 9999999963 699999999999999999999999999999999998765211 1 0 11 224556
Q ss_pred ccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 226 ISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 226 ~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
...+.+..+.|+|+|+.++++.|+++++++++
T Consensus 237 ~~~~~~~~~~v~d~e~~~~~~~la~~~gi~ve 268 (311)
T TIGR01275 237 LDDYSGPGYGKPTSEVAEIVKKVASREGIILD 268 (311)
T ss_pred ECCcccCcCCCCCHHHHHHHHHHHHHhCCccC
Confidence 66777889999999999999999999999875
No 66
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=5e-44 Score=323.09 Aligned_cols=243 Identities=19% Similarity=0.241 Sum_probs=191.7
Q ss_pred HhhhcccC-CCCceecccccCCC------CceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHH
Q 025113 9 RDVTELIG-NTPMVYLNNVVDGC------VARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTG 81 (257)
Q Consensus 9 ~~i~~~~~-~TPl~~~~~l~~~~------~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~ 81 (257)
+.+..++| +|||+++++|++.+ |.+||+|+|++|||||||+|.+...+..|.+.|+ ...|+++|+||||
T Consensus 57 ~~l~~~vGr~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~g~----~~vIaesgaGNhG 132 (410)
T PLN02618 57 GILKDYVGRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGK----KRIIAETGAGQHG 132 (410)
T ss_pred HHHHHhcCCCCceeEhhhHHHHhccccCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHcCC----CEEEEEcCcHHHH
Confidence 45677885 99999999998766 4799999999999999999999999998888774 2344466799999
Q ss_pred HHHHHHHHHcCCcEEEEeCCCC---CHHHHHHHHHCCCEEEEECC-CCCHHHHHH-HHHHHHHhCCCeEEe-CCCC--CC
Q 025113 82 VGLAFIAAARGYNLIIVMPSTC---SMERRIVLRALGAEIILADS-ALRFEEILE-KGEEILKKTPDGYLL-RQFE--NP 153 (257)
Q Consensus 82 ~alA~~a~~~g~~~~i~vp~~~---~~~~~~~l~~~Ga~v~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~--~~ 153 (257)
.|+|++|+++|++|+||||... +..++.+|+.+||+|+.++. +.+++++.. .+++++++..+.+|+ .+.. +|
T Consensus 133 ~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P 212 (410)
T PLN02618 133 VATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHP 212 (410)
T ss_pred HHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCC
Confidence 9999999999999999999853 35677799999999999964 357888874 456677764455555 2221 22
Q ss_pred --cchHhhHhhHHHHHHhhh----CCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCc--------cccCCC
Q 025113 154 --ANPKIHYETTGPEIWQDS----GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESA--------VLNGGQ 219 (257)
Q Consensus 154 --~~~~~g~~t~~~Ei~~ql----~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~--------~~~~~~ 219 (257)
.+...++.++|.||.+|+ +..||+||+|+|+||+++|++.+|+. .++++||||||.++. ++..+.
T Consensus 213 ~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~-~~~v~ligVEa~G~~~~~~~~~a~l~~g~ 291 (410)
T PLN02618 213 YPMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFID-DEDVRLIGVEAAGFGLDSGKHAATLTKGE 291 (410)
T ss_pred CHHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHh-CCCceEEEEEeCCCcccccccccchhcCC
Confidence 234578999999997775 34699999999999999999999975 689999999999862 222221
Q ss_pred cc-------------------c---------------ceeccc-cCCeEEEeChHHHHHHHHHHHhhcCeec
Q 025113 220 RG-------------------L---------------FIFISY-LFRSFVLVDDGAVVHLHNYLLLHIFTLV 256 (257)
Q Consensus 220 ~~-------------------~---------------~~i~~~-~~~~~v~v~d~e~~~a~~~l~~~~~~~v 256 (257)
++ + +..++. ..++++.|+|+|+.+|+++|++++++++
T Consensus 292 ~gv~~g~~~~~l~~~~g~~~~~~sia~gl~~pgvgp~~~~l~~~~~~~~v~VtD~Eal~a~~~La~~eGIi~ 363 (410)
T PLN02618 292 VGVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDTGRAEYYSVTDEEALEAFQRLSRLEGIIP 363 (410)
T ss_pred cceeccccccccccccCCCCCCcchhhhhcCCCCcHHHHHHHhhcCcEEEEECHHHHHHHHHHHHHHcCceE
Confidence 11 0 111222 5678999999999999999999999985
No 67
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=1.2e-44 Score=318.91 Aligned_cols=237 Identities=36% Similarity=0.447 Sum_probs=194.3
Q ss_pred hhcccCCCCceecc--cccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHH
Q 025113 11 VTELIGNTPMVYLN--NVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (257)
Q Consensus 11 i~~~~~~TPl~~~~--~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a 88 (257)
|+.++++|||++++ .++...+.+||+|+|++|||||||+|++.+++.++.+++. .+|+++|+||||.|+|++|
T Consensus 1 i~~~~~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~~-----~~vv~assGN~g~a~A~~a 75 (306)
T PF00291_consen 1 ISLGIGPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKGG-----RTVVGASSGNHGRALAYAA 75 (306)
T ss_dssp GGGGSSSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTT-----SEEEEESSSHHHHHHHHHH
T ss_pred CcCCCcCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhcccccc-----ceeeeeccCCceehhhhhh
Confidence 57899999999975 4445567899999999999999999999999999998863 6789999999999999999
Q ss_pred HHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCC--CCHHHHHHHHHHH---HHhCCCeEEeCCCCCCcchHhhHhhH
Q 025113 89 AARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA--LRFEEILEKGEEI---LKKTPDGYLLRQFENPANPKIHYETT 163 (257)
Q Consensus 89 ~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (257)
+.+|+++++|+|+++++.++++++.+||+|+.++.. ..++++.+.+++. ....++. ++|+ ++.+.+.||.++
T Consensus 76 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~g~~~~ 152 (306)
T PF00291_consen 76 ARLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPGDVEGAFDDAQELAKERAELLSPFNGE--LNQY-NNPNVIAGYATI 152 (306)
T ss_dssp HHHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESSTHHHHHHHHHHHHHHHHHHHHHSTTE--ESTT-TSHHHHHHHHHH
T ss_pred hhccccceeeeccccccccccceeeecceEEEccccccccccccccccccccccccccccc--cCcc-cchhhhhhhhhc
Confidence 999999999999999999999999999999999853 1234444444432 2222233 7777 555668999999
Q ss_pred HHHHHhhhCCCCCE--EEEecCchhHHHHHHHHHHh--cCCCcEEEEEeCCCCccccC----CC----------------
Q 025113 164 GPEIWQDSGGKVDA--FISGIGTGGTVTGAGRFLKE--NNPDIKVYGVEPSESAVLNG----GQ---------------- 219 (257)
Q Consensus 164 ~~Ei~~ql~~~~d~--iv~pvG~Gg~~aGi~~~~k~--~~~~~~vigv~~~~~~~~~~----~~---------------- 219 (257)
+.||++|++ .||. ||+|+|+||+++|++.+++. . |++++|+|++.+++++.. +.
T Consensus 153 ~~Ei~~q~~-~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~-~~~~vigv~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~ 230 (306)
T PF00291_consen 153 GLEIYEQLG-KPDPDYVVVPVGTGGTAAGIAAGLKELIL-PPVRVIGVEPEGSDPLYRSFKAGKPIRLPGESTIAGLGVP 230 (306)
T ss_dssp HHHHHHHHT-TESESEEEEEESSSHHHHHHHHHHHHHCH-TTSEEEEEEETTGHHHHHHHHHTSCEHSSCHHSSTGGTSS
T ss_pred chhcccccc-cccceEEEecCCchhHHHHHHhhhhhhhc-ccccceeeeccCCccccccccccccccccceeeeecccCC
Confidence 999999996 6665 99999999999999999999 7 899999999999876531 11
Q ss_pred ---cc--cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 220 ---RG--LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 220 ---~~--~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
++ .+++.+.+.++++.|+|+|+.+++++|++++++++|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~ 273 (306)
T PF00291_consen 231 MPFPGELDLELIDEYVGDVVGVSDEEALEAIRELAEREGILVE 273 (306)
T ss_dssp SCTTTTHHHHHHHHETEEEEEEEHHHHHHHHHHHHHHHSB-B-
T ss_pred ccchhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCcEEc
Confidence 11 134556667788999999999999999999999875
No 68
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=1.2e-44 Score=327.93 Aligned_cols=237 Identities=14% Similarity=0.060 Sum_probs=197.3
Q ss_pred hcccCCCCceecccccCCCCc-eEEEEe-------CCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHH
Q 025113 12 TELIGNTPMVYLNNVVDGCVA-RIAAKL-------ETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG 83 (257)
Q Consensus 12 ~~~~~~TPl~~~~~l~~~~~~-~l~~K~-------E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~a 83 (257)
....+.|||++++.|+..+|. +||+|+ |++|||||||||++.+++.++.+.|. ..|+++|+||||+|
T Consensus 57 ~~~~g~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g~-----~~Vv~aSsGN~g~a 131 (398)
T TIGR03844 57 LRTRGGPVTYKSEGLARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERGG-----KTLVVASAGNTGRA 131 (398)
T ss_pred CCCCCCCceeehHHHHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcCC-----CEEEEECCCHHHHH
Confidence 346678999999999988887 999954 55899999999999999999998873 67999999999999
Q ss_pred HHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhH
Q 025113 84 LAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETT 163 (257)
Q Consensus 84 lA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (257)
+|++|+++|++++||||.+++..+...++.+|++|+.+++ +|+++.+.+++++++. +++..++++||.. +.|++|+
T Consensus 132 lA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~g--~~d~a~~~a~~~a~~~-g~~~~~~~~~p~~-ieG~~Ti 207 (398)
T TIGR03844 132 FAEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVDG--DYTDAIALADRIATLP-GFVPEGGARNVAR-RDGMGTV 207 (398)
T ss_pred HHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECCC--CHHHHHHHHHHHHHhC-CccccCCCCCHHH-HhhHHHH
Confidence 9999999999999999998654333335788999999985 5999999999998876 6655566778877 8999999
Q ss_pred HHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcC-------CCcEEEEEeCCCCccccC----CC---------c---
Q 025113 164 GPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENN-------PDIKVYGVEPSESAVLNG----GQ---------R--- 220 (257)
Q Consensus 164 ~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~-------~~~~vigv~~~~~~~~~~----~~---------~--- 220 (257)
++||++|++..||+||+|+|+|+++.|++.+++++. .-+++++||+++++++.. +. +
T Consensus 208 ~~Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~~p~~~a~~~g~~~~~~~~~~~~~~ 287 (398)
T TIGR03844 208 MLDAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQNLPFVPMVNAWQEGRREIIPESDMPDAE 287 (398)
T ss_pred HHHHHHHcCCCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEEcCCchHHHHHHHcCCCccccccCCcccc
Confidence 999999996449999999999988999999888742 337899999999887631 10 0
Q ss_pred --------------cc--------ceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 221 --------------GL--------FIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 221 --------------~~--------~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
.+ +++++...++++.|+|+||.+|+++|+++++++|+
T Consensus 288 ~~~~~t~a~~l~i~~p~~~~~~~~l~air~~~g~~v~Vsd~eI~~A~~~l~~~~gi~vE 346 (398)
T TIGR03844 288 NSIEEVYSDVLTNRTPPYGVTGGVFDALIATGGQMYGVSNKEAVSAGKLFEESEGIDIL 346 (398)
T ss_pred ccccceecceeeeCCCCcchHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhCCcccc
Confidence 00 23345667899999999999999999999999875
No 69
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=5.1e-44 Score=321.96 Aligned_cols=242 Identities=20% Similarity=0.189 Sum_probs=191.2
Q ss_pred hhhccc-CCCCceecccccCCC-CceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEE-eCCChHHHHHHH
Q 025113 10 DVTELI-GNTPMVYLNNVVDGC-VARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIE-VTSGNTGVGLAF 86 (257)
Q Consensus 10 ~i~~~~-~~TPl~~~~~l~~~~-~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~-~ssGN~~~alA~ 86 (257)
....+. .+|||+++++|+..+ +.+||+|+|++|||||||+|++..++..+.++|. ..+++ +|+||||+|+|+
T Consensus 26 ~~~~~~~~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~~g~-----~~vv~~~ssGN~g~alA~ 100 (365)
T cd06446 26 LYKDYVGRPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK-----KRVIAETGAGQHGVATAT 100 (365)
T ss_pred HhhccCCCCCCceehHHHHHhhCCceEEEEeccCCCccchhHHHHHHHHHHHHHcCC-----CeEEEecCchHHHHHHHH
Confidence 334444 499999999998777 5799999999999999999999999999998885 34555 699999999999
Q ss_pred HHHHcCCcEEEEeCCCCC---HHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHH-HHhCCC-eEEeCCC----CCCcch
Q 025113 87 IAAARGYNLIIVMPSTCS---MERRIVLRALGAEIILADSA-LRFEEILEKGEEI-LKKTPD-GYLLRQF----ENPANP 156 (257)
Q Consensus 87 ~a~~~g~~~~i~vp~~~~---~~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~~~~~-~~~~~~-~~~~~~~----~~~~~~ 156 (257)
+|+.+|++|+||||...+ +.++.+++.+||+|+.++.. .+++++...+.+. +++.++ +|+++++ .++.++
T Consensus 101 ~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 180 (365)
T cd06446 101 ACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYPNMV 180 (365)
T ss_pred HHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccCCCCchHHH
Confidence 999999999999998643 36788999999999999863 2456666544443 443223 4444432 123466
Q ss_pred HhhHhhHHHHHHhhhC----CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCC--------Ccc---
Q 025113 157 KIHYETTGPEIWQDSG----GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGG--------QRG--- 221 (257)
Q Consensus 157 ~~g~~t~~~Ei~~ql~----~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~--------~~~--- 221 (257)
++||.|+++||++|+. ..||+||+|+|+||+++|++.+++. .++++||+|||.+++++.+. ...
T Consensus 181 ~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~-~~~~~vigVep~gs~~~~~~~~~~~~~g~~~~~~ 259 (365)
T cd06446 181 RDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFIN-DKDVKLIGVEAGGCGLETGGHAAYLFGGTAGVLH 259 (365)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHh-CCCceEEEEcCCCCccccccceeeccCCCcceec
Confidence 8899999999999985 3699999999999999999998887 46899999999998776421 000
Q ss_pred ---c-----------------------------ceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 222 ---L-----------------------------FIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 222 ---~-----------------------------~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
+ +.+.+...|+++.|+|+|+.+++++|+++++++++
T Consensus 260 ~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~r~la~~eGi~~e 327 (365)
T cd06446 260 GLKMYTLQDEDGQIVPPHSISAGLDYPGVGPEHAYLKDSGRVEYVAVTDEEALEAFKLLARTEGIIPA 327 (365)
T ss_pred chhhhccccccCCCCCcccccccccCCCCCHHHHHHHHhCCceEEEeChHHHHHHHHHHHHhcCceeC
Confidence 0 01223456889999999999999999999999975
No 70
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=9.6e-44 Score=323.52 Aligned_cols=240 Identities=19% Similarity=0.196 Sum_probs=191.2
Q ss_pred HhhhcccCCCCceecccccCCCC--ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEE-eCCChHHHHHH
Q 025113 9 RDVTELIGNTPMVYLNNVVDGCV--ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIE-VTSGNTGVGLA 85 (257)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~~--~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~-~ssGN~~~alA 85 (257)
+......++|||+++++|++.++ .+||+|+|++|||||||+|++.+++..+.++|. ..+++ +|+||||.|+|
T Consensus 60 ~~~~l~g~pTPL~r~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~-----~~~vtetssGN~G~alA 134 (419)
T TIGR01415 60 KRYAQIGRPTPLIRAKGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGA-----KRLVTETGAGQWGSALS 134 (419)
T ss_pred HHHHhcCCCCCeEEccchhhhhCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCC-----CeEEEecCchHHHHHHH
Confidence 33444446999999999987766 689999999999999999999999999999985 34564 68999999999
Q ss_pred HHHHHcCCcEEEEeCCCC---CHHHHHHHHHCCCEEEEECCCCCHHH------------------HHHHHHHHHHhCC-C
Q 025113 86 FIAAARGYNLIIVMPSTC---SMERRIVLRALGAEIILADSALRFEE------------------ILEKGEEILKKTP-D 143 (257)
Q Consensus 86 ~~a~~~g~~~~i~vp~~~---~~~~~~~l~~~Ga~v~~~~~~~~~~~------------------~~~~~~~~~~~~~-~ 143 (257)
++|+.+|++|+||||... ++.|+.+|+.+||+|+.++.+ +++ +++.+.+++++.+ .
T Consensus 135 ~aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~--~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~~~ 212 (419)
T TIGR01415 135 LAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSE--FTEFGREVLKEDPDHPGSLGIAISEAIEYALSDEDT 212 (419)
T ss_pred HHHHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCc--hhhHHHHhhhcccccccchHHHHHHHHHHHHhCCCC
Confidence 999999999999999843 568899999999999999964 333 2455666666544 4
Q ss_pred eEEeCCCCCCcchHhhHhhHHHHHHhhhCC---CCCEEEEecCchhHHHHHHHHHHhc----CCCcEEEEEeCCCCcccc
Q 025113 144 GYLLRQFENPANPKIHYETTGPEIWQDSGG---KVDAFISGIGTGGTVTGAGRFLKEN----NPDIKVYGVEPSESAVLN 216 (257)
Q Consensus 144 ~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~---~~d~iv~pvG~Gg~~aGi~~~~k~~----~~~~~vigv~~~~~~~~~ 216 (257)
.|+++++.| +...|+.++|+||++|++. .||+||+|+|+||+++|++.+|.+. .++++||+|||.++++++
T Consensus 213 ~y~~~~~~n--~~~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~~l~ 290 (419)
T TIGR01415 213 KYSLGSVLN--HVLLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACPTLT 290 (419)
T ss_pred EEEeCCCCc--HHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCChhhh
Confidence 466666655 3477999999999999964 4999999999999999999888322 257999999999998775
Q ss_pred CCC------------cc-----------cce-----------------eccccCCeEEEeChHHHHHHHHHHHhhcCeec
Q 025113 217 GGQ------------RG-----------LFI-----------------FISYLFRSFVLVDDGAVVHLHNYLLLHIFTLV 256 (257)
Q Consensus 217 ~~~------------~~-----------~~~-----------------i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v 256 (257)
.+. +. +.. +.+....+++.|+|+|+.+|+++|++++++++
T Consensus 291 ~g~~~yd~~~~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~~~~~~~~~l~~~~~~~~~~V~d~e~~~a~r~la~~eGi~~ 370 (419)
T TIGR01415 291 RGEYRYDFGDTAGLTPLLKMYTLGHDFIPPPIHAGGLRYHGVAPTLSLLVNLGIVEARAYDQEEAFEAAVIFAKTEGIVP 370 (419)
T ss_pred cCcccccccccccCCcceeeeecCCCCCCcceeccccccCCccHHHHHHhhcCceEEEEECHHHHHHHHHHHHHhcCCcc
Confidence 431 00 000 01223346889999999999999999999987
Q ss_pred C
Q 025113 257 C 257 (257)
Q Consensus 257 ~ 257 (257)
.
T Consensus 371 e 371 (419)
T TIGR01415 371 A 371 (419)
T ss_pred c
Confidence 4
No 71
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=2.7e-44 Score=320.92 Aligned_cols=248 Identities=15% Similarity=0.098 Sum_probs=201.1
Q ss_pred hhhhHhhhcccCCCCceecccccCCCC--ceEEEEeCCCCCC---CChhhHHHHHHHHHHHHcCCCCCCceEEEEe--CC
Q 025113 5 NAIKRDVTELIGNTPMVYLNNVVDGCV--ARIAAKLETMEPC---SSVKDRIAYSMIKDAEDKGLITPGKTTLIEV--TS 77 (257)
Q Consensus 5 ~~~~~~i~~~~~~TPl~~~~~l~~~~~--~~l~~K~E~~~pt---GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--ss 77 (257)
+..++++...+++|||++++.++...| .+||+|+|++||+ ||||+|.+.+++.++.++|. .+|+++ |+
T Consensus 3 ~~~~~~~~l~~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~G~s~ 77 (337)
T PRK12390 3 LQKFPRYPLTFGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGA-----DTLVSIGGVQ 77 (337)
T ss_pred CCCCCccccCCCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCC-----CEEEEeCCCc
Confidence 445678889999999999999887777 6999999999987 78899999999999999885 667876 88
Q ss_pred ChHHHHHHHHHHHcCCcEEEEeCCCCC--------HHHHHHHHHCCCEEEEECCCC--CHHHHHHHHHHHHHhCCCeEE-
Q 025113 78 GNTGVGLAFIAAARGYNLIIVMPSTCS--------MERRIVLRALGAEIILADSAL--RFEEILEKGEEILKKTPDGYL- 146 (257)
Q Consensus 78 GN~~~alA~~a~~~g~~~~i~vp~~~~--------~~~~~~l~~~Ga~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~- 146 (257)
||||+|+|++|+.+|+++++|+|..++ ..++..++.+||+|+.++.+. .+.++.+.+.+..++.++..|
T Consensus 78 GN~g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (337)
T PRK12390 78 SNHTRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYA 157 (337)
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEE
Confidence 999999999999999999999876543 236778999999999999631 234666666666666434444
Q ss_pred eCCCCCCc-chHhhHhhHHHHHHhh---hCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCC----
Q 025113 147 LRQFENPA-NPKIHYETTGPEIWQD---SGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGG---- 218 (257)
Q Consensus 147 ~~~~~~~~-~~~~g~~t~~~Ei~~q---l~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~---- 218 (257)
++.+.++. ....||.++++||++| ++++||+||+|+|||||++|++.++|+..|++|||+||+.+++.+...
T Consensus 158 ~~~~~~~~~~~~~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~~~~~~~~~ 237 (337)
T PRK12390 158 IPAGASDHPLGGLGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPEQTRAQVLR 237 (337)
T ss_pred eCCcCCCCCcccHHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHHH
Confidence 44443321 1245888889999998 545799999999999999999999999999999999999998765321
Q ss_pred ------------C-c--ccceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 219 ------------Q-R--GLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 219 ------------~-~--~~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
. + ..+.+.+.+.++.+.|+|+|+.+++++|+++++++++
T Consensus 238 ~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~vsd~e~~~a~~~la~~~gi~~e 291 (337)
T PRK12390 238 IARNTAELVELGRDITEDDVVLDERYAGPEYGLPNEGTLEAIRLCARLEGMLTD 291 (337)
T ss_pred HHHHHHHHhCCCCCCChhhEEEecccccCCCCCCCHHHHHHHHHHHHhcCcccc
Confidence 0 1 1234566788999999999999999999999999875
No 72
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=9.4e-44 Score=313.79 Aligned_cols=234 Identities=21% Similarity=0.195 Sum_probs=192.0
Q ss_pred CCceecccccCCC--CceEEEEeCCCCCC---CChhhHHHHHHHHHHHHcCCCCCCceEEEEe--CCChHHHHHHHHHHH
Q 025113 18 TPMVYLNNVVDGC--VARIAAKLETMEPC---SSVKDRIAYSMIKDAEDKGLITPGKTTLIEV--TSGNTGVGLAFIAAA 90 (257)
Q Consensus 18 TPl~~~~~l~~~~--~~~l~~K~E~~~pt---GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--ssGN~~~alA~~a~~ 90 (257)
|||++++.|+..+ +.+||+|+|++||+ ||||+|++.+++.++.++|. ++|+++ |+||||+|+|++|+.
T Consensus 1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~-----~~vv~~ggs~GN~g~alA~~a~~ 75 (307)
T cd06449 1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGA-----DTLVTVGGIQSNHTRQVAAVAAK 75 (307)
T ss_pred CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCC-----CEEEECCCchhHHHHHHHHHHHH
Confidence 8999999998766 56899999999998 56799999999999998885 568887 689999999999999
Q ss_pred cCCcEEEEeCCCCC--------HHHHHHHHHCCCEEEEECCCC--CHHHHHHHH-HHHHHhCCCeEE-eCCC-CCCcchH
Q 025113 91 RGYNLIIVMPSTCS--------MERRIVLRALGAEIILADSAL--RFEEILEKG-EEILKKTPDGYL-LRQF-ENPANPK 157 (257)
Q Consensus 91 ~g~~~~i~vp~~~~--------~~~~~~l~~~Ga~v~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~-~~~~-~~~~~~~ 157 (257)
+|++++||||.+.+ ..|+++++.+||+|+.++.+. ...++.+.+ +.+.++.+..++ .+++ +||.+ .
T Consensus 76 ~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 154 (307)
T cd06449 76 LGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLG-G 154 (307)
T ss_pred cCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCccc-H
Confidence 99999999999776 468999999999999998641 122233333 333333323344 4555 48888 7
Q ss_pred hhHhhHHHHHHhhhCC---CCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC--------------CC-
Q 025113 158 IHYETTGPEIWQDSGG---KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG--------------GQ- 219 (257)
Q Consensus 158 ~g~~t~~~Ei~~ql~~---~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~--------------~~- 219 (257)
.||.|++.||++|+++ .||+||+|+|||||++|++.++|++.++++||+|||.+++.+.. +.
T Consensus 155 ~G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~~~~~~~~~~~~~~~~~~g~~ 234 (307)
T cd06449 155 LGYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEKTKAQVLRIAQAKLAEEGLE 234 (307)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchHHHHHHHHHHHHHHHHHcCCC
Confidence 7999999999999854 69999999999999999999999999999999999999866421 11
Q ss_pred --cccceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 220 --RGLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 220 --~~~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
..++.+...+.++.+.|+|+|+.++++.|+++++++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~~Gi~~e 274 (307)
T cd06449 235 VKEEDVVLDDDYAAPEYGIPNDETIEAIKLCARLEGIITD 274 (307)
T ss_pred CCcccEEEecCcccCCCCCCCHHHHHHHHHHHHHhCCccc
Confidence 12345666778889999999999999999999999875
No 73
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=1.6e-43 Score=315.91 Aligned_cols=247 Identities=17% Similarity=0.138 Sum_probs=200.6
Q ss_pred hhhhHhhhcccCCCCceecccccCCCCc--eEEEEeCCCCCC---CChhhHHHHHHHHHHHHcCCCCCCceEEEEe--CC
Q 025113 5 NAIKRDVTELIGNTPMVYLNNVVDGCVA--RIAAKLETMEPC---SSVKDRIAYSMIKDAEDKGLITPGKTTLIEV--TS 77 (257)
Q Consensus 5 ~~~~~~i~~~~~~TPl~~~~~l~~~~~~--~l~~K~E~~~pt---GS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--ss 77 (257)
+..+.++...+++|||++++.+++.+|. +||+|+|++||+ ||||+|++.+++.++.++|. ++|+++ |+
T Consensus 2 ~~~~~~~~l~~g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~ggs~ 76 (337)
T TIGR01274 2 LSRFPRYPLTFGPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGC-----TTLVSIGGIQ 76 (337)
T ss_pred CCcCCccccCCCCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCC-----CEEEECCCCc
Confidence 3456788899999999999999887764 999999999986 77899999999999999885 567876 77
Q ss_pred ChHHHHHHHHHHHcCCcEEEEeCCCCC--------HHHHHHHHHCCCEEEEECCCC--CHHHHHHHHHHHHHhC-CCeEE
Q 025113 78 GNTGVGLAFIAAARGYNLIIVMPSTCS--------MERRIVLRALGAEIILADSAL--RFEEILEKGEEILKKT-PDGYL 146 (257)
Q Consensus 78 GN~~~alA~~a~~~g~~~~i~vp~~~~--------~~~~~~l~~~Ga~v~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~ 146 (257)
||||+|+|++|+.+|++|+||||+..+ +.|+.+++.+||+|+.++.+. +..+....+.+.+++. +..++
T Consensus 77 gN~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 156 (337)
T TIGR01274 77 SNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYP 156 (337)
T ss_pred chHHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEE
Confidence 999999999999999999999998542 579999999999999998531 1234555555555554 23356
Q ss_pred eCCCC--CCcchHhhHhhHHHHHHhhh---CCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----
Q 025113 147 LRQFE--NPANPKIHYETTGPEIWQDS---GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG---- 217 (257)
Q Consensus 147 ~~~~~--~~~~~~~g~~t~~~Ei~~ql---~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~---- 217 (257)
++.+. ++.. ..|+.++++||++|+ +++||+||+|+|+|||++|++.+++.+.++++|||||+.+++++..
T Consensus 157 i~~~~~~~~~~-~~G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~~~~~~~~ 235 (337)
T TIGR01274 157 IPAGCSDHPLG-GLGFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPEQTRAQIL 235 (337)
T ss_pred eCCCCCCCccc-hhHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHH
Confidence 55553 3444 568889999999995 4479999999999999999999999999999999999999866521
Q ss_pred ------------CCc---ccceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 218 ------------GQR---GLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 218 ------------~~~---~~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
..+ ..+.+...+.++.+.|+|+|+.++++.|+++++++++
T Consensus 236 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~eGi~~e 290 (337)
T TIGR01274 236 RIARNTAEKIGLERDITEDDVVLDTRFAYPEYGVPNEGTLEAIRLCAKMEGVLTD 290 (337)
T ss_pred HHHHHHHHHhCCCCCcCccceEEeccccCCCcCCCCHHHHHHHHHHHHhcCCccC
Confidence 011 1134555667889999999999999999999999875
No 74
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=8e-43 Score=317.93 Aligned_cols=241 Identities=20% Similarity=0.190 Sum_probs=190.8
Q ss_pred hhcccCCCCceecccccCCCC--ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEE-eCCChHHHHHHHH
Q 025113 11 VTELIGNTPMVYLNNVVDGCV--ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIE-VTSGNTGVGLAFI 87 (257)
Q Consensus 11 i~~~~~~TPl~~~~~l~~~~~--~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~-~ssGN~~~alA~~ 87 (257)
+....++|||+++++|++.+| .+||+|+|++|||||||+|++..++..+.+.|. ..+++ +|+||||.|+|++
T Consensus 71 ~~~~~~~TPL~~~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~-----~~~vtetgsGN~G~alA~a 145 (427)
T PRK12391 71 IYRLWRPTPLIRARRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGI-----KRLTTETGAGQWGSALALA 145 (427)
T ss_pred HHcccCCCCeeEchhhHhhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCC-----CEEEEccCchHHHHHHHHH
Confidence 345678999999999987766 689999999999999999999999999999885 34665 6789999999999
Q ss_pred HHHcCCcEEEEeCCC---CCHHHHHHHHHCCCEEEEECCCCC----------------HHHHHHHHHHHHHhCCCeEEeC
Q 025113 88 AAARGYNLIIVMPST---CSMERRIVLRALGAEIILADSALR----------------FEEILEKGEEILKKTPDGYLLR 148 (257)
Q Consensus 88 a~~~g~~~~i~vp~~---~~~~~~~~l~~~Ga~v~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~ 148 (257)
|+.+|++|+||||.. .++.|+.+|+.+||+|+.++.+.+ +..+++.+.+++.+.++.+|..
T Consensus 146 aa~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~ 225 (427)
T PRK12391 146 CALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYAL 225 (427)
T ss_pred HHHcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEc
Confidence 999999999999974 366889999999999999985311 1124566667766654555554
Q ss_pred CCCCCcchHhhHhhHHHHHHhhhC---CCCCEEEEecCchhHHHHHHHHHHh---cC-CCcEEEEEeCCCCccccCCC--
Q 025113 149 QFENPANPKIHYETTGPEIWQDSG---GKVDAFISGIGTGGTVTGAGRFLKE---NN-PDIKVYGVEPSESAVLNGGQ-- 219 (257)
Q Consensus 149 ~~~~~~~~~~g~~t~~~Ei~~ql~---~~~d~iv~pvG~Gg~~aGi~~~~k~---~~-~~~~vigv~~~~~~~~~~~~-- 219 (257)
... ..+.+.||.++|+||++|+. ..||+||+|+|+||+++|++.+|.. .+ ++++||+|||.++++++.+.
T Consensus 226 ~s~-~~~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~l~~g~~~ 304 (427)
T PRK12391 226 GSV-LNHVLLHQTVIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPTLTKGEYA 304 (427)
T ss_pred CCC-CcHHHhhHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccchhhcccccc
Confidence 433 23457899999999999985 3699999999999999999987732 34 88999999999998875421
Q ss_pred ------cc--c-------------cee-----------------ccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 220 ------RG--L-------------FIF-----------------ISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 220 ------~~--~-------------~~i-----------------~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
.+ + ..+ .+....+++.|+|+|+.+|+++|++++++++.
T Consensus 305 ~~~gd~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~g~~~~~~~l~~~~~~~~~~V~d~e~~~a~~~~a~~eGi~~~ 380 (427)
T PRK12391 305 YDFGDTAGLTPLLKMYTLGHDFVPPPIHAGGLRYHGMAPLVSLLVHEGLIEARAYPQTEVFEAAVLFARTEGIVPA 380 (427)
T ss_pred ccccccccCCccceeEecCCCCCCccccccccccCCchHHHHHHHhcCceEEEEECHHHHHHHHHHHHHHcCCeec
Confidence 00 0 000 01122467999999999999999999999863
No 75
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=7e-44 Score=297.80 Aligned_cols=246 Identities=38% Similarity=0.600 Sum_probs=212.4
Q ss_pred hhhcccCCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHH
Q 025113 10 DVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAA 89 (257)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~ 89 (257)
-+-..+|+|||+++..|++.-|++++.|.|.+||.||.|||.|.++++.|++.|+|-||. .|++.++||+|.++|..|.
T Consensus 42 Gv~~~IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~gg-~v~EGtaGsTgIslA~v~~ 120 (391)
T KOG1481|consen 42 GVEGAIGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRGG-TVVEGTAGSTGISLAHVAR 120 (391)
T ss_pred hhHHhhCCCceEEeeccccccccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccCc-eEEecCCCccchhHHHhhh
Confidence 456789999999999999999999999999999999999999999999999999999995 4999999999999999999
Q ss_pred HcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCC-----CHH-HHHHHHHHHHHhCC--CeEEeCCCCCCcchHhhHh
Q 025113 90 ARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL-----RFE-EILEKGEEILKKTP--DGYLLRQFENPANPKIHYE 161 (257)
Q Consensus 90 ~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~-----~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~ 161 (257)
.+|.+|+|+||.+.+.+|.+.++.+||+|+.|++.. .|. .+.+.+.+...+.. ..+|.+||+|++||..||.
T Consensus 121 a~Gyk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aHye 200 (391)
T KOG1481|consen 121 ALGYKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLAHYE 200 (391)
T ss_pred hcCcceEEECCChHHHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHHHhc
Confidence 999999999999999999999999999999998631 121 22333333333321 2477899999999999999
Q ss_pred hHHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCC-cEEEEEeCCCCccc--------cC-----CC--------
Q 025113 162 TTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPD-IKVYGVEPSESAVL--------NG-----GQ-------- 219 (257)
Q Consensus 162 t~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~-~~vigv~~~~~~~~--------~~-----~~-------- 219 (257)
|+|+|||.|..+++|++++.+|||||++|+.+++|+..+. ++++..+|.++-.. +. |.
T Consensus 201 tTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGSGlYnkV~~GVmy~~~e~eG~r~r~q~dt 280 (391)
T KOG1481|consen 201 TTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSGLYNKVNYGVMYDHIETEGTRRRNQVDT 280 (391)
T ss_pred CcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCCchhhhhhhhhhhhhhhhcCcccCCCcch
Confidence 9999999999999999999999999999999999999876 99999999998421 11 10
Q ss_pred ----------cccceeccccCCeEEEeChHHHHHHHHHHHhhcCeec
Q 025113 220 ----------RGLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLV 256 (257)
Q Consensus 220 ----------~~~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v 256 (257)
..++.+.+.+.|+.+.|+|+++.+.-++|..+++.+|
T Consensus 281 i~EGIGinRiT~Nf~m~~~liD~a~rv~Deqai~Msr~Ll~~dGLFv 327 (391)
T KOG1481|consen 281 ITEGIGINRITGNFQMAEDLIDDAMRVTDEQAINMSRYLLDNDGLFV 327 (391)
T ss_pred hhhcccccccccccccchhhhhhheecChHHHHHHHHHhhhcCceEe
Confidence 1234556778999999999999999999999999876
No 76
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=2.8e-42 Score=327.46 Aligned_cols=241 Identities=19% Similarity=0.250 Sum_probs=194.7
Q ss_pred hhcccC-CCCceecccccCC----CC--ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHH
Q 025113 11 VTELIG-NTPMVYLNNVVDG----CV--ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG 83 (257)
Q Consensus 11 i~~~~~-~TPl~~~~~l~~~----~~--~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~a 83 (257)
...++| +|||+++++|+.. +| .+||+|+|++|||||||+|++.+++..+.+.|+ ...|+++|+||||.|
T Consensus 319 ~~~~iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS~KdR~Al~~i~~A~~~G~----~~~IvetssGNhG~A 394 (695)
T PRK13802 319 NQRYVGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVKRMGK----TRVIAETGAGQHGVA 394 (695)
T ss_pred HHhcCCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCCcHHHHHHHHHHHHHHcCC----CCEEEEECcHHHHHH
Confidence 456788 9999999998743 44 699999999999999999999999999999986 356889999999999
Q ss_pred HHHHHHHcCCcEEEEeCCC---CCHHHHHHHHHCCCEEEEECC-CCCHHHHHHHH-HHHHHhCC-CeEEeCCCCCC----
Q 025113 84 LAFIAAARGYNLIIVMPST---CSMERRIVLRALGAEIILADS-ALRFEEILEKG-EEILKKTP-DGYLLRQFENP---- 153 (257)
Q Consensus 84 lA~~a~~~g~~~~i~vp~~---~~~~~~~~l~~~Ga~v~~~~~-~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~---- 153 (257)
+|++|+++|++|+||||.. .+..|+.+|+.+||+|+.++. ..+++++.+.+ ++++++.+ .+|+++++.||
T Consensus 395 lA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p 474 (695)
T PRK13802 395 TATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFP 474 (695)
T ss_pred HHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCcH
Confidence 9999999999999999985 367899999999999999984 34678876555 55666543 45678888654
Q ss_pred cchHhhHhhHHHHHHhhhCC-----CCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC----------C
Q 025113 154 ANPKIHYETTGPEIWQDSGG-----KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----------G 218 (257)
Q Consensus 154 ~~~~~g~~t~~~Ei~~ql~~-----~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~----------~ 218 (257)
.++..|++|+|.||++|+.. .||+||+|+|+||+++|++.+|+. .+++++|||||.++.+..+ +
T Consensus 475 ~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~-~~~vkligVE~~g~g~~~g~h~~~~~~g~g 553 (695)
T PRK13802 475 AMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLD-DERVNLYGYEAGGNGPESGKHAIRFAPGTG 553 (695)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHh-CCCceEEEEEecCCCccccchhhhhhhccC
Confidence 34568999999999999842 699999999999999999999976 6889999999998743321 1
Q ss_pred Cccc------c-------eecc-cc-------------------CC--eEEEeChHHHHHHHHHHHhhcCeec
Q 025113 219 QRGL------F-------IFIS-YL-------------------FR--SFVLVDDGAVVHLHNYLLLHIFTLV 256 (257)
Q Consensus 219 ~~~~------~-------~i~~-~~-------------------~~--~~v~v~d~e~~~a~~~l~~~~~~~v 256 (257)
.++. + .+.. +. .+ .++.|+|+|+.+|.+.|+++|+|++
T Consensus 554 ~~g~~~g~~~~~~~~~~g~~~~~~sis~gLdy~gvgp~~~~l~~~~rv~~~~vtD~eal~a~~~La~~EGIip 626 (695)
T PRK13802 554 ELGMFQGAKSYLLENDEGQTLDTYSISAGLDYASVGPEHAWLKDIGRVNYSWATDEEAMNAFKDLCETEGIIP 626 (695)
T ss_pred CccccccceeecccCCCCCccCccccccccCCCCCCchhHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCccc
Confidence 1110 0 0000 01 22 3589999999999999999999986
No 77
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=3.2e-42 Score=306.53 Aligned_cols=246 Identities=17% Similarity=0.183 Sum_probs=195.1
Q ss_pred hhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCCC--CChhhHHHHHHHHHHHHcCCCCCCceEEE--EeCCChH
Q 025113 5 NAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPC--SSVKDRIAYSMIKDAEDKGLITPGKTTLI--EVTSGNT 80 (257)
Q Consensus 5 ~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~pt--GS~K~R~a~~~~~~a~~~g~~~~g~~~vv--~~ssGN~ 80 (257)
++.+++++..+++|||++++.++...|++||+|+|++||+ ||||+|++.+++.++.++|. .+|+ ++|+|||
T Consensus 9 ~~~~~~~~l~~~~TPl~~~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~-----~~vv~~~~ssGN~ 83 (329)
T PRK14045 9 LSKFPRVELIPWETPIQYLPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGA-----DVVITVGAVHSNH 83 (329)
T ss_pred hhcCCCcccCCCCCCcccchhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCC-----CEEEEeCccHHHH
Confidence 4567899999999999999998877788999999999996 89999999999999998885 4566 5899999
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCCHH-HHHHHHHCCCEEEEECCCCC---HHHHHHHHHHHHHhCCCeEE-eCCCCCCcc
Q 025113 81 GVGLAFIAAARGYNLIIVMPSTCSME-RRIVLRALGAEIILADSALR---FEEILEKGEEILKKTPDGYL-LRQFENPAN 155 (257)
Q Consensus 81 ~~alA~~a~~~g~~~~i~vp~~~~~~-~~~~l~~~Ga~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 155 (257)
|+|+|++|+.+|+++++|||...+.. +...++.+||+++.++...+ .+.+.+.+++++++.+..+| .+++.|+.+
T Consensus 84 g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~ 163 (329)
T PRK14045 84 AFVTGLAAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVG 163 (329)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhH
Confidence 99999999999999999999865433 66677899999998874222 33556667777666544555 466678888
Q ss_pred hHhhHhhHHHHHHhhhC---CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCc-cccC-------------C
Q 025113 156 PKIHYETTGPEIWQDSG---GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESA-VLNG-------------G 218 (257)
Q Consensus 156 ~~~g~~t~~~Ei~~ql~---~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~-~~~~-------------~ 218 (257)
+. |+.+...||++|+. .++|+||+|+|||||++|++.++|..+|+++||||++.+.. .+.+ +
T Consensus 164 ~~-g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~~~~~~~~~~~~~~~~~~~~~g 242 (329)
T PRK14045 164 TL-GYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGSFGEKMKEKVKNLVKKTKELLG 242 (329)
T ss_pred HH-HHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhC
Confidence 54 44444449999985 37999999999999999999999999999999999997732 1211 0
Q ss_pred --Ccc-cceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 219 --QRG-LFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 219 --~~~-~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
... ...+.+...+++..++ +|..++++.|+++++++++
T Consensus 243 ~~~~~~~~~~~d~~~~~y~~~~-~e~~~~~~~la~~eGi~ld 283 (329)
T PRK14045 243 VKVKVQEPELYDYSFGEYGKIT-KEVAKLIRSVGTMEGLILD 283 (329)
T ss_pred CCCCccceEecccccCCCCCCC-HHHHHHHHHHHHhhCCCCc
Confidence 000 1223344447788888 6999999999999999874
No 78
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=5.8e-41 Score=318.46 Aligned_cols=240 Identities=21% Similarity=0.216 Sum_probs=190.0
Q ss_pred hcccC-CCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHH
Q 025113 12 TELIG-NTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAA 90 (257)
Q Consensus 12 ~~~~~-~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~ 90 (257)
..+.+ +|||+++++|++.+|.+||+|+|++|||||||+|.+...+..+.+.|+ ...|+++|+||||+|+|++|+.
T Consensus 265 ~~~~grpTPL~~~~~Ls~~~G~~IylK~E~lnptGS~K~r~al~~~~~a~~~g~----~~vi~e~gsGnhG~A~A~~aa~ 340 (610)
T PRK13803 265 QNYAGRPTPLTEAKRLSDIYGARIYLKREDLNHTGSHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATACAL 340 (610)
T ss_pred HHhCCCCCcceeHHHHHHhhCCEEEEEeCCCCCcccHHHHHHHHHHHHHHHcCC----CEEEEecChHHHHHHHHHHHHH
Confidence 34454 899999999998788899999999999999999999999999988774 2445578999999999999999
Q ss_pred cCCcEEEEeCCCC---CHHHHHHHHHCCCEEEEECC-CCCHHHHHHHH-HHHHHhCCCeEEeCCCC---C--CcchHhhH
Q 025113 91 RGYNLIIVMPSTC---SMERRIVLRALGAEIILADS-ALRFEEILEKG-EEILKKTPDGYLLRQFE---N--PANPKIHY 160 (257)
Q Consensus 91 ~g~~~~i~vp~~~---~~~~~~~l~~~Ga~v~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~--~~~~~~g~ 160 (257)
+|++|+||||... +..++.+|+.+||+|+.++. ..+++++...+ +++..+.++.+|+.++. + |.++..|+
T Consensus 341 ~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~~ 420 (610)
T PRK13803 341 FGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQ 420 (610)
T ss_pred cCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHHh
Confidence 9999999999764 35688899999999999985 34677775544 44545555677775432 2 33433589
Q ss_pred hhHHHHHHhhhC----CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCc--------cccCCCcc-------
Q 025113 161 ETTGPEIWQDSG----GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESA--------VLNGGQRG------- 221 (257)
Q Consensus 161 ~t~~~Ei~~ql~----~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~--------~~~~~~~~------- 221 (257)
+|++.||++|+. ..||+||+|+|+||+++|++.+|+. .++++||||||.++. ++..+.++
T Consensus 421 ~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~~-~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g~~~g~~~ 499 (610)
T PRK13803 421 SVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFLD-DPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLHGSMT 499 (610)
T ss_pred hHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHhh-CCCceEEEEecCCCCcccccccchhhcCCeeeecccee
Confidence 999999999983 2599999999999999999999964 789999999999852 22222110
Q ss_pred ------------cc----------------eeccccCCeEEEeChHHHHHHHHHHHhhcCeec
Q 025113 222 ------------LF----------------IFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLV 256 (257)
Q Consensus 222 ------------~~----------------~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v 256 (257)
++ .+.+...++++.|+|+|+.+|++.|++++++++
T Consensus 500 ~~~~~~~g~~~~~~sia~gl~~~gvg~~~~~~~~~~~~~~v~Vtd~ea~~a~~~La~~eGi~~ 562 (610)
T PRK13803 500 YLMQDENGQILEPHSISAGLDYPGIGPMHANLFETGRAIYTSVTDEEALDAFKLLAKLEGIIP 562 (610)
T ss_pred eeecccCCcccCCceeeccCCCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCcc
Confidence 11 112233457999999999999999999999986
No 79
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.3e-39 Score=289.50 Aligned_cols=239 Identities=22% Similarity=0.189 Sum_probs=206.8
Q ss_pred hhhcccCCCCceecccccCCCCc---eEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHH
Q 025113 10 DVTELIGNTPMVYLNNVVDGCVA---RIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF 86 (257)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~~~---~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~ 86 (257)
.++...+.||+++.+.+...++. ++|+|.|++|||||||||++..+++.+.+.|. .+|+++||||+|.|+|.
T Consensus 69 ~~~l~eg~tp~~~~~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~-----~~I~~ASSGnTgAs~aa 143 (411)
T COG0498 69 AVSLGEGGTPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA-----KTILCASSGNTGASAAA 143 (411)
T ss_pred hhhhhhccCccccCcccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC-----CEEEEeCCchHHHHHHH
Confidence 45778899999999888776663 59999999999999999999999999999883 46999999999999999
Q ss_pred HHHHcCCcEEEEeCCC-CCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHH
Q 025113 87 IAAARGYNLIIVMPST-CSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGP 165 (257)
Q Consensus 87 ~a~~~g~~~~i~vp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 165 (257)
++.+.|+++.|++|.. ++..|+.+|..+|++++.+++ +||+|++.+++++++. ++++....-||.. +.|+.|+++
T Consensus 144 ya~rag~~v~Vl~P~g~vs~~k~~q~~~~ga~~i~v~G--~fDda~~~vk~~~~~~-~~~~~~nsiNp~r-legq~t~~f 219 (411)
T COG0498 144 YAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDG--NFDDAQELVKEAANRE-GLLSAVNSINPYR-LEGQKTYAF 219 (411)
T ss_pred HhccCCCeEEEEecCCCCCHHHHHHHHhcCCEEEEEcC--cHHHHHHHHHHHHhhC-CceeeccccCHHH-hhhhhhhHh
Confidence 9999999999999997 999999999999999999995 5999999999999866 5577777778887 789999999
Q ss_pred HHHhhhCC-CCCEEEEecCchhHHHHHHHHHHhcCCC------cEEEEEeCCCCccccC------------------CCc
Q 025113 166 EIWQDSGG-KVDAFISGIGTGGTVTGAGRFLKENNPD------IKVYGVEPSESAVLNG------------------GQR 220 (257)
Q Consensus 166 Ei~~ql~~-~~d~iv~pvG~Gg~~aGi~~~~k~~~~~------~~vigv~~~~~~~~~~------------------~~~ 220 (257)
|+++|+++ .||+|++|+|+||++.|++.++++..+. ++..+||++++.++.. +.|
T Consensus 220 e~~~ql~~~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~~~~~~~~~~~~T~a~am~I~~p 299 (411)
T COG0498 220 EIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGVYAWKEGRETPETIAPAMDIGNP 299 (411)
T ss_pred HHHHHhCCCCCCeEEEeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccchhhhcccccccccccccccccCCC
Confidence 99999973 6999999999999999999999988764 7889999999776532 112
Q ss_pred ccce----eccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 221 GLFI----FISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 221 ~~~~----i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
..++ ..+.....++.|||+|+.+++++|+++++++++
T Consensus 300 ~n~~r~l~a~~es~g~~~~vsdeEi~~a~~~l~~~eG~~~e 340 (411)
T COG0498 300 SNWERALFALRESGGLAVAVSDEEILEAIKLLAEREGILIE 340 (411)
T ss_pred CCHHHHHHHHHhcCCceEEeCHHHHHHHHHHHHHhCCcccC
Confidence 2221 122334559999999999999999999999875
No 80
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.97 E-value=5.4e-30 Score=218.18 Aligned_cols=239 Identities=19% Similarity=0.233 Sum_probs=189.0
Q ss_pred hccc-CCCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHH
Q 025113 12 TELI-GNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAA 90 (257)
Q Consensus 12 ~~~~-~~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~ 90 (257)
..+. +||||...++|++.++.+||+|+|++|.||+||...+...+.-|.+.|+ .+.|.+...|.||.|.|.+|++
T Consensus 50 ~~Y~GRptpLy~a~~Lt~~~gakiyLKREDL~HtGAHKiNN~lGQ~LLAkrMGK----~riIAETGAGQHGVAtAta~A~ 125 (396)
T COG0133 50 KDYAGRPTPLYFAERLTEHLGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATAAAL 125 (396)
T ss_pred HHhCCCCChhHHHHHHHHhhCceEEEehhhhcccchhhHHHHHHHHHHHHHhCC----ceEEeecCCCcccHHHHHHHHH
Confidence 3344 4899999999999999999999999999999999999999999999997 5666788889999999999999
Q ss_pred cCCcEEEEeCCC-C--CHHHHHHHHHCCCEEEEECC-CCCHHHHHHHH-HHHHHhCCCeEEeCCC---CCCc--chHhhH
Q 025113 91 RGYNLIIVMPST-C--SMERRIVLRALGAEIILADS-ALRFEEILEKG-EEILKKTPDGYLLRQF---ENPA--NPKIHY 160 (257)
Q Consensus 91 ~g~~~~i~vp~~-~--~~~~~~~l~~~Ga~v~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~--~~~~g~ 160 (257)
+|++|+|||... + ...++-.|+.+||+|+.|.. +.++.|+...| +.+.......+|+... -+|+ .....+
T Consensus 126 fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ 205 (396)
T COG0133 126 FGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQ 205 (396)
T ss_pred hCCceEEEecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHHH
Confidence 999999999863 3 45568889999999999984 56788888765 5677766667776442 1222 223478
Q ss_pred hhHHHHHHhhh----CCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCc--------cccCCCccc------
Q 025113 161 ETTGPEIWQDS----GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESA--------VLNGGQRGL------ 222 (257)
Q Consensus 161 ~t~~~Ei~~ql----~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~--------~~~~~~~~~------ 222 (257)
+.++.|.-+|+ +.-||+||.|||+|+++.|+...|-. .+++++||||+.+.- ++..|.++.
T Consensus 206 ~vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~-d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG~~t 284 (396)
T COG0133 206 SVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMKT 284 (396)
T ss_pred HHHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccC-CCCceEEEeccCcCccCCCccceeecCCCceeeecccc
Confidence 89999987775 44599999999999999999877754 367999999998743 232222221
Q ss_pred -------------ce----------------eccccCCeEEEeChHHHHHHHHHHHhhcCee
Q 025113 223 -------------FI----------------FISYLFRSFVLVDDGAVVHLHNYLLLHIFTL 255 (257)
Q Consensus 223 -------------~~----------------i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~ 255 (257)
+. +...-..+++.|+|+|+.+|..+|.+.|+|+
T Consensus 285 yllQd~~GQi~e~hSISAGLDYPgVGPeha~l~~~gRa~y~~itD~EAl~af~~L~r~EGII 346 (396)
T COG0133 285 YLLQDEDGQILESHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDEEALEAFQLLSRLEGII 346 (396)
T ss_pred eeeEcCCCCEeeeeeeccCCCCCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHhcCcc
Confidence 11 1112234599999999999999999999986
No 81
>PRK09225 threonine synthase; Validated
Probab=99.97 E-value=1e-29 Score=233.37 Aligned_cols=226 Identities=16% Similarity=0.084 Sum_probs=175.8
Q ss_pred CCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHH---HHHHHHHcCCCCCCceEEEEeCCChHHHHH-HHHHHHcC
Q 025113 17 NTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYS---MIKDAEDKGLITPGKTTLIEVTSGNTGVGL-AFIAAARG 92 (257)
Q Consensus 17 ~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~---~~~~a~~~g~~~~g~~~vv~~ssGN~~~al-A~~a~~~g 92 (257)
.+||.+++. ++|+.-.+++||||||||++.. ++.++.+ +. ...|+++||||+|.|+ +.++.+.|
T Consensus 88 ~~pl~~l~~-------~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~----~~~Il~ATSGdtG~Aa~aaf~~~~g 155 (462)
T PRK09225 88 IAPLVQLDD-------NLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GE----KITILGATSGDTGSAAAEAFRGKPN 155 (462)
T ss_pred ccceEEeCC-------CceeHhhccCCccchhhhHHHHHHHHHHHHHh-CC----CcEEEEcCCCcHHHHHHHHHhCcCC
Confidence 478877742 6999999999999999999988 8888887 42 4679999999999998 67888999
Q ss_pred CcEEEEeCCC-CCHHHHHHHHHC-CCEEEEECCCCCHHHHHHHHHHHHHhC-----CCeEEeCCCCCCcchHhhHhhHHH
Q 025113 93 YNLIIVMPST-CSMERRIVLRAL-GAEIILADSALRFEEILEKGEEILKKT-----PDGYLLRQFENPANPKIHYETTGP 165 (257)
Q Consensus 93 ~~~~i~vp~~-~~~~~~~~l~~~-Ga~v~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~t~~~ 165 (257)
++++|++|++ +++.++++|..+ |++|+.+..+++|++|.+.++++.++. -+++-.+. -|+.. +.++.+.++
T Consensus 156 i~~~V~~P~g~vs~~q~~Qm~t~~g~nv~vi~V~G~fDD~q~~vk~~~~d~~~~~~~~l~saNS-iN~~R-i~gQ~~yyf 233 (462)
T PRK09225 156 VRVVILYPKGKVSPVQEKQMTTLQGDNIHVVAVEGNFDDCQALVKAAFNDEELKEKLKLSSANS-INIGR-LLAQIVYYF 233 (462)
T ss_pred CEEEEEEcCCCCCHHHHHHHHhhcCCCeEEEEeCCCHHHHHHHHHHHhhchhhhhcCceEEEec-cCHHH-HHHHHHHHH
Confidence 9999999995 899999999999 998854443367999999998876551 14444444 37776 789999999
Q ss_pred HHHhhhCC---CCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc-----C-----------------CCc
Q 025113 166 EIWQDSGG---KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN-----G-----------------GQR 220 (257)
Q Consensus 166 Ei~~ql~~---~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~-----~-----------------~~~ 220 (257)
|+++|+++ .||+|+||+|+||.+.|.+.+.+.-.|-.|+|+++ ..++++. + +.|
T Consensus 234 ea~~ql~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~A~-n~n~~l~~~~~~G~y~~~~~~~T~s~amdI~~p 312 (462)
T PRK09225 234 YAYLQLGIEAGEKVNFSVPSGNFGNILAGYYAKKMGLPIKRLIVAT-NENDVLTRFLKTGVYDPRPTVATLSPAMDISVS 312 (462)
T ss_pred HHHHHhccccCCCCEEEEECCcHHHHHHHHHHHHcCCCcceEEEEe-cCChHHHHHHHcCCCccCCCCCCcCchhhcCCC
Confidence 99999964 38999999999999999999844434556999997 4433331 1 112
Q ss_pred cccee----------------ccc---cCC---------------eEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 221 GLFIF----------------ISY---LFR---------------SFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 221 ~~~~i----------------~~~---~~~---------------~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
++++. ++. ... ..+.|+|+|+.++++.+++++++++|
T Consensus 313 sn~eR~l~~~~~~~~~~v~~~m~~l~~~gg~~~~~~~~~~~~~~f~a~~vsD~ei~~ai~~~~~~~G~~~d 383 (462)
T PRK09225 313 SNFERLLFDLLGRDAAAVEELMEDLEEKGEYDLSDEELAALREDFSAGSVSDEETLATIREVYEEYGYLID 383 (462)
T ss_pred CcHHHHHHHhcCCcHHHHHHHHHHHHHcCCcccCHHHHHHhhhcceEEEECHHHHHHHHHHHHHhCCEEEC
Confidence 22211 111 122 57999999999999999999999987
No 82
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=99.96 E-value=2.5e-28 Score=207.44 Aligned_cols=248 Identities=19% Similarity=0.154 Sum_probs=193.5
Q ss_pred hhhhhHhhhcccCCCCceecccccCCCCceEEEEeCCCCC--CCChhhHHHHHHHHHHHHcCCCCCCceEEEEe--CCCh
Q 025113 4 NNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEP--CSSVKDRIAYSMIKDAEDKGLITPGKTTLIEV--TSGN 79 (257)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~~~~l~~K~E~~~p--tGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~--ssGN 79 (257)
.+..++|+....++|||-.+++++...|+++|+|+|++.+ .|.+|.|+..+++.+|.++|. +++|+. ..+|
T Consensus 2 ~l~rf~R~~l~~~pTPiq~L~rls~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~-----dTlvT~GgiQSN 76 (323)
T COG2515 2 NLSRFPRMELIFGPTPIQKLPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGA-----DTLVTYGGIQSN 76 (323)
T ss_pred CcccCCccccCCCCChhhhHHHHHHhcCeEEEEEcccccccccCccHHHHHHHHHhhhhhcCC-----cEEEEecccchh
Confidence 3556889999999999999999999999999999999966 779999999999999998874 778885 5699
Q ss_pred HHHHHHHHHHHcCCcEEEEeCCCC----CHHHHHHHHHCCCEEEEECCCCCH--HHHHHHHHHHHHhCCCeEEeCCC-C-
Q 025113 80 TGVGLAFIAAARGYNLIIVMPSTC----SMERRIVLRALGAEIILADSALRF--EEILEKGEEILKKTPDGYLLRQF-E- 151 (257)
Q Consensus 80 ~~~alA~~a~~~g~~~~i~vp~~~----~~~~~~~l~~~Ga~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~- 151 (257)
|.+++|++|+++|++|+.++.... -..++...+.+|+++..++...++ ..-....++..++.++..|+.|. .
T Consensus 77 h~r~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG~ 156 (323)
T COG2515 77 HVRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGGS 156 (323)
T ss_pred HHHHHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEeccCCc
Confidence 999999999999999999997654 233666778899999999975444 22233333333444444444443 3
Q ss_pred CCcchHhhHhhHHHHHHhhhC--CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccC------------
Q 025113 152 NPANPKIHYETTGPEIWQDSG--GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG------------ 217 (257)
Q Consensus 152 ~~~~~~~g~~t~~~Ei~~ql~--~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~------------ 217 (257)
||.- ..||...+.||.+|.. -++|.||+++|||||.||+..++....++.+|||+..........
T Consensus 157 ~~~g-~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~~~~~qv~~L~~~~a~ 235 (323)
T COG2515 157 SPLG-ALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEKLKEQVLNLAQATAE 235 (323)
T ss_pred Cccc-cccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCHHHHHHHHHHHHHHHHH
Confidence 4433 5689999999999986 479999999999999999999999999999999999888754321
Q ss_pred ----CCcccceeccccCCeEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 218 ----GQRGLFIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 218 ----~~~~~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
+....+.+..++.-.-+-...+|.+++++.+.+.++++.|
T Consensus 236 ~~~~~~~~~v~~~~dy~~~~Yg~p~~e~~e~i~~~~~~eGillD 279 (323)
T COG2515 236 LLGLGSEADVLLSDDYHHPGYGKPNEEDIEAIKLLARLEGILLD 279 (323)
T ss_pred HcCCCCCceEEEEecccCCccCCcCHHHHHHHHHHHHhhCcccc
Confidence 1111223333344344667788999999999999999865
No 83
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=99.96 E-value=7.8e-28 Score=221.12 Aligned_cols=226 Identities=15% Similarity=0.088 Sum_probs=173.7
Q ss_pred CCCceecccccCCCCceEEEEeCCCCCCCChhhHHHHHH---HHHHHHcCCCCCCceEEEEeCCChHHHH-HHHHHHHcC
Q 025113 17 NTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSM---IKDAEDKGLITPGKTTLIEVTSGNTGVG-LAFIAAARG 92 (257)
Q Consensus 17 ~TPl~~~~~l~~~~~~~l~~K~E~~~ptGS~K~R~a~~~---~~~a~~~g~~~~g~~~vv~~ssGN~~~a-lA~~a~~~g 92 (257)
-+||.++.. ++|++.++++||||||||++..+ +..+.++. .+...|+++||||+|.| ++.++...|
T Consensus 87 ~~pl~~l~~-------~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~---~~~~~Il~ATSGdTG~Aa~aaf~~~~g 156 (460)
T cd01560 87 IAPLVQLGD-------NLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRR---NERITILVATSGDTGSAAIEGFRGKPN 156 (460)
T ss_pred ccceEEeCC-------CcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhc---CCCeEEEEcCCCcHHHHHHHHHhCcCC
Confidence 377777653 68999999999999999999876 67776541 13478999999999999 478889999
Q ss_pred CcEEEEeCCC-CCHHHHHHHHHCCC---EEEEECCCCCHHHHHHHHHHHHHhC-----CCeEEeCCCCCCcchHhhHhhH
Q 025113 93 YNLIIVMPST-CSMERRIVLRALGA---EIILADSALRFEEILEKGEEILKKT-----PDGYLLRQFENPANPKIHYETT 163 (257)
Q Consensus 93 ~~~~i~vp~~-~~~~~~~~l~~~Ga---~v~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~t~ 163 (257)
++++|++|.. +++.++.+|..+|+ +++.+++ +|++|++.++++.++. -+++-.+. -|+.. +.++.+.
T Consensus 157 i~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi~V~G--~fDd~q~~vk~~~~d~~~~~~~~l~saNS-iN~~R-i~~Q~~y 232 (460)
T cd01560 157 VDVVVLYPKGGVSPIQELQMTTLPADNVHVVAVEG--DFDDCQSLVKALFADEDFNKKLKLSSANS-INWAR-ILAQIVY 232 (460)
T ss_pred CEEEEEEcCCCCCHHHHHHHHhhCCCceEEEEEcC--CHHHHHHHHHHHhcChhhHhcceEEEEec-cCHHH-HHHHHHH
Confidence 9999999995 89999999999996 7888884 5999999998876542 13343433 46666 6799999
Q ss_pred HHHHHhhhCC----CCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcccc-----C-----------------
Q 025113 164 GPEIWQDSGG----KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN-----G----------------- 217 (257)
Q Consensus 164 ~~Ei~~ql~~----~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~-----~----------------- 217 (257)
++|+++|+.+ .||.|+||+|+||.+.|.+.+.+.-.|-.|+|+++.... .+. |
T Consensus 233 yf~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~a~n~n~-il~~~~~~G~y~~~~~~~~T~spamd 311 (460)
T cd01560 233 YFYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATNEND-VLRRFFKTGRYDRRESLKQTLSPAMD 311 (460)
T ss_pred HHHHHHHhccccCCCCCEEEEECCcHHHHHHHHHHHHcCCCCccEEEEeCCCh-HHHHHHHcCCCcCCCCCCCCcCchhh
Confidence 9999999964 589999999999999999998665456678998755432 221 1
Q ss_pred -CCcccc-eeccc---cCC------------------------------eEEEeChHHHHHHHHHHHhhcCeecC
Q 025113 218 -GQRGLF-IFISY---LFR------------------------------SFVLVDDGAVVHLHNYLLLHIFTLVC 257 (257)
Q Consensus 218 -~~~~~~-~i~~~---~~~------------------------------~~v~v~d~e~~~a~~~l~~~~~~~v~ 257 (257)
+.|+++ +++.. ... ..+.|+|+|+.++++.+++++++++|
T Consensus 312 I~~psn~eR~L~~l~~~~g~~~~~~m~~~~~~g~~~~~~~~l~~~~~~f~a~~vsD~ei~~~i~~~~~~~G~~vd 386 (460)
T cd01560 312 ILKSSNFERLLFLLAGRDRTKVKMLMEEFEATGFLSLPKEELKKLREDFSSGSVSDEETLETIREVYEETGYLID 386 (460)
T ss_pred cCCCCCHHHHHHHHhCCCHHHHHHHHHHHHhcCCEecCHHHHHhhhccceEEEECHHHHHHHHHHHHHhcCEEEC
Confidence 011111 11111 111 56899999999999999999999987
No 84
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.94 E-value=1.3e-25 Score=191.87 Aligned_cols=234 Identities=20% Similarity=0.184 Sum_probs=178.9
Q ss_pred CCCCceecccccCCCC--ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEE-eCCChHHHHHHHHHHHcC
Q 025113 16 GNTPMVYLNNVVDGCV--ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIE-VTSGNTGVGLAFIAAARG 92 (257)
Q Consensus 16 ~~TPl~~~~~l~~~~~--~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~-~ssGN~~~alA~~a~~~g 92 (257)
++|||+|.++|.+.++ +++|.|.|+..||||||...|......+...|. ..++| ...|.||.|++++|+.+|
T Consensus 77 RPTPL~RA~~LE~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~-----~rl~TETGAGQWGsAlslA~alf~ 151 (432)
T COG1350 77 RPTPLIRAKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGA-----KRLTTETGAGQWGSALSLAAALFG 151 (432)
T ss_pred CCCchhhhhhHHHHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCc-----eeeecccCCchHHHHHHHHHHHhC
Confidence 6999999999987655 799999999999999999999999999998885 44554 567999999999999999
Q ss_pred CcEEEEeCCC---CCHHHHHHHHHCCCEEEEECCCCCH----------------HHHHHHHHHHHHhCCCeEEeCCCCCC
Q 025113 93 YNLIIVMPST---CSMERRIVLRALGAEIILADSALRF----------------EEILEKGEEILKKTPDGYLLRQFENP 153 (257)
Q Consensus 93 ~~~~i~vp~~---~~~~~~~~l~~~Ga~v~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (257)
++|+|||-.. ..+.++..|+.+||+|+..+.+.+- -=++..|-+.+-++++..|....--.
T Consensus 152 lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~~kY~lGSVln 231 (432)
T COG1350 152 LKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKNENTKYSLGSVLN 231 (432)
T ss_pred ceeEEEEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCCceecchhHHH
Confidence 9999999763 3677888999999999998864211 11355565666655545554432111
Q ss_pred cchHhhHhhHHHHHHhh---hCCCCCEEEEecCchhHHHHHHHHHHh--c-CC-CcEEEEEeCCCCccccCCC-------
Q 025113 154 ANPKIHYETTGPEIWQD---SGGKVDAFISGIGTGGTVTGAGRFLKE--N-NP-DIKVYGVEPSESAVLNGGQ------- 219 (257)
Q Consensus 154 ~~~~~g~~t~~~Ei~~q---l~~~~d~iv~pvG~Gg~~aGi~~~~k~--~-~~-~~~vigv~~~~~~~~~~~~------- 219 (257)
....|+..+|.|..+| ++..||++|.|||+|++++|+..-|-. + +. ..++|+|+|..++.+..|.
T Consensus 232 -hvllhQTViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiAvep~a~P~lT~GeY~YD~gD 310 (432)
T COG1350 232 -HVLLHQTVIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVEPKACPKLTKGEYRYDFGD 310 (432)
T ss_pred -HHHHHHHHHhHHHHHHHHhcCCCCCEEEEeccCCCccccccchhhhhhhcCCceeEEEEeCCccCCccccceeeccCCc
Confidence 2357999999999555 566799999999999999998765532 2 22 2899999999999886421
Q ss_pred ------------------ccc---------------ceeccccCCeEEEeChHHHHHHHHHHHhhcCee
Q 025113 220 ------------------RGL---------------FIFISYLFRSFVLVDDGAVVHLHNYLLLHIFTL 255 (257)
Q Consensus 220 ------------------~~~---------------~~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~ 255 (257)
|.+ ..+.+.-.-+.+..+.+|+-+|-+.+++.++++
T Consensus 311 tagltPllKMyTlGhd~vpPpihAgGLRYHG~aPtls~L~~~Giv~a~ay~Q~Evfeaa~lFa~~EGiV 379 (432)
T COG1350 311 TAGLTPLLKMYTLGHDYVPPPIHAGGLRYHGVAPTLSLLVKEGIVEARAYDQEEVFEAAVLFARTEGIV 379 (432)
T ss_pred hhccchhhhhhccCCCccCCCcccccccccCcChHHHHHHHcCcccceecChHHHHHHHHHHHHhcCCc
Confidence 000 011223344588899999999999999999986
No 85
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.93 E-value=5.4e-25 Score=189.63 Aligned_cols=237 Identities=19% Similarity=0.200 Sum_probs=172.6
Q ss_pred ccCCCCceecccccCCC--CceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHc
Q 025113 14 LIGNTPMVYLNNVVDGC--VARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAAR 91 (257)
Q Consensus 14 ~~~~TPl~~~~~l~~~~--~~~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~ 91 (257)
.-++|||++.++|-+.+ |.++|+|+|++||+||||...+...+..+.+.|+ ...|.+...|.||.|+|.+|+++
T Consensus 119 ~gRpspL~~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~QallakrlGk----knviaETGAGQhGvatA~a~a~F 194 (477)
T KOG1395|consen 119 LGRPSPLIRAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRLGK----KNVIAETGAGQHGVATATACAKF 194 (477)
T ss_pred cCCCchhHHHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHhcc----cceeeccCCCccchHHHHHHHHh
Confidence 34699999999998765 4799999999999999999999999988888887 45566778899999999999999
Q ss_pred CCcEEEEeCCC---CCHHHHHHHHHCCCEEEEECC-CCCHHHHHHHHHH-HHHhCCCeEEeCCCC-CC--c--chHhhHh
Q 025113 92 GYNLIIVMPST---CSMERRIVLRALGAEIILADS-ALRFEEILEKGEE-ILKKTPDGYLLRQFE-NP--A--NPKIHYE 161 (257)
Q Consensus 92 g~~~~i~vp~~---~~~~~~~~l~~~Ga~v~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~--~--~~~~g~~ 161 (257)
|++|+|+|-.+ ..+.++-+|+.+||+|+.+.. ..++.++...+-+ +.....-.+|+.... .| . ....-+.
T Consensus 195 Gl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~~gphp~pt~vr~fhs 274 (477)
T KOG1395|consen 195 GLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVVRTFHS 274 (477)
T ss_pred CCceEEEechhHHHHHHHHHHHHHHhCceEeecCCCceehhcccchhhhhhhhhhheeeeeecccCCCCCcHHHHHHHHH
Confidence 99999999764 367788999999999999985 3345554444322 222222233433221 11 1 1123467
Q ss_pred hHHHHHHhhh----CCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCcc--------ccCCCcc--------
Q 025113 162 TTGPEIWQDS----GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAV--------LNGGQRG-------- 221 (257)
Q Consensus 162 t~~~Ei~~ql----~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~--------~~~~~~~-------- 221 (257)
+++.|-..|. ++.||.||.|+|+|++++|+..-|..- ..++.|+|+..+... +..+.++
T Consensus 275 vIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~d-k~v~~igveaagdg~dtp~hsatltagd~Gv~hG~~ty 353 (477)
T KOG1395|consen 275 VIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIRD-KSVGMIGVEAAGDGVDTPKHSATLTAGDVGVFHGVTTY 353 (477)
T ss_pred HHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhcc-chhheeeeeecccccCCcchhceeecccccccccceee
Confidence 8888776553 456999999999999999998887653 347888888766432 1111111
Q ss_pred -----------cce----------------eccccCCeEEEeChHHHHHHHHHHHhhcCee
Q 025113 222 -----------LFI----------------FISYLFRSFVLVDDGAVVHLHNYLLLHIFTL 255 (257)
Q Consensus 222 -----------~~~----------------i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~ 255 (257)
++. +...-..+++.|+|.|..++.++|.+.|+|+
T Consensus 354 ~lq~~dGqi~~phsIsAGLdYpGvgPels~~k~~grae~isitd~eclegfk~~srlEGII 414 (477)
T KOG1395|consen 354 VLQDTDGQIFDPHSISAGLDYPGVGPELSHLKETGRAEFISITDAECLEGFKQLSRLEGII 414 (477)
T ss_pred eeeccCCccccCCccccCCCCCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHhcccc
Confidence 011 1122345699999999999999999999986
No 86
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.92 E-value=1.3e-24 Score=184.23 Aligned_cols=242 Identities=19% Similarity=0.259 Sum_probs=200.9
Q ss_pred hcccCCCCceecccccC--------CCCceEEEEeCCCCC-CCChhhHHHHHHHHH-----HHHcCCCCCC---------
Q 025113 12 TELIGNTPMVYLNNVVD--------GCVARIAAKLETMEP-CSSVKDRIAYSMIKD-----AEDKGLITPG--------- 68 (257)
Q Consensus 12 ~~~~~~TPl~~~~~l~~--------~~~~~l~~K~E~~~p-tGS~K~R~a~~~~~~-----a~~~g~~~~g--------- 68 (257)
+.++..+||+.++.+.+ ....++|+|.+++.| +||.|.|+..|-+.. |.+.|.+.-.
T Consensus 73 ~~GiIES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~ 152 (443)
T COG3048 73 TGGIIESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSE 152 (443)
T ss_pred cCCeeccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcH
Confidence 45778899998876541 233589999999999 999999988877642 3455544332
Q ss_pred -------ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhC
Q 025113 69 -------KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKT 141 (257)
Q Consensus 69 -------~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~ 141 (257)
...|...|+||.|+++..+.+.+|+++++-|..++.++|...++..|.+|+..+ .+|..+++.-++-++..
T Consensus 153 ~f~~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~WKKd~LRs~gV~ViEYe--~DY~~AVeeGRk~a~~D 230 (443)
T COG3048 153 EFKDFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARAWKKDKLRSHGVTVVEYE--QDYGVAVEEGRKEAESD 230 (443)
T ss_pred HHHHHHHhheEeecccCccceehhhhhhhhcceEEEEecchHHHHHHHHHHhcCceEEEec--chhhHHHHHhhhhhccC
Confidence 335778999999999999999999999999999999999999999999999999 56999999999999999
Q ss_pred CCeEEeCCCCCCcchHhhHhhHHHHHHhhhC--------CCCCEEEEecCchhHHHHHHHHHHhc-CCCcEEEEEeCCCC
Q 025113 142 PDGYLLRQFENPANPKIHYETTGPEIWQDSG--------GKVDAFISGIGTGGTVTGAGRFLKEN-NPDIKVYGVEPSES 212 (257)
Q Consensus 142 ~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~--------~~~d~iv~pvG~Gg~~aGi~~~~k~~-~~~~~vigv~~~~~ 212 (257)
|..||++..+.... ..||...+..+-.|+. ..|-.|..|||.||.-.|++.++|.. ..+++++-+||..+
T Consensus 231 P~c~FiDDE~S~~L-FLGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfFaEPths 309 (443)
T COG3048 231 PNCFFIDDENSRTL-FLGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHS 309 (443)
T ss_pred CceEEecccchhhh-hhhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEEEecCCCC
Confidence 99999987655443 6799999999988874 24678999999999999999999976 56799999999999
Q ss_pred ccccC----------------------------CCcccc--eeccccCCeEEEeChHHHHHHHHHHHhhcCeec
Q 025113 213 AVLNG----------------------------GQRGLF--IFISYLFRSFVLVDDGAVVHLHNYLLLHIFTLV 256 (257)
Q Consensus 213 ~~~~~----------------------------~~~~~~--~i~~~~~~~~v~v~d~e~~~a~~~l~~~~~~~v 256 (257)
+||.- +.|+.+ +.++.+.+.+++|+|+..++-+.+|++.+++-+
T Consensus 310 PcMlLGv~tGlHe~ISVqdiGidn~TaADGLAVgRpSgfVgr~me~lL~G~~TvdD~~ly~lL~~L~~~e~~rl 383 (443)
T COG3048 310 PCMLLGVYTGLHEQISVQDIGIDNLTAADGLAVGRPSGFVGRAMERLLDGYYTVDDQTLYDLLGWLAQEEGIRL 383 (443)
T ss_pred hHHHHhhhhccccceeeEeecccccccccceeecCccchHHHHHHHHhCCcEEechHHHHHHHHHHHHhcCccc
Confidence 99731 223322 567778899999999999999999999998754
No 87
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=93.32 E-value=0.77 Score=36.97 Aligned_cols=119 Identities=15% Similarity=0.094 Sum_probs=71.4
Q ss_pred HHHHHHHHHHcCCcEE-EEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhh
Q 025113 81 GVGLAFIAAARGYNLI-IVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIH 159 (257)
Q Consensus 81 ~~alA~~a~~~g~~~~-i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 159 (257)
|..+.++++.+|.++. -+.+.+.-...++.+...|-+|..++++ -....+.++.+.+++|+.-.+.-+.-+.+ ..-
T Consensus 13 G~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~--~~~~~~~~~~l~~~yP~l~ivg~~~g~f~-~~~ 89 (172)
T PF03808_consen 13 GMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGS--EEVLEKAAANLRRRYPGLRIVGYHHGYFD-EEE 89 (172)
T ss_pred CHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCC--HHHHHHHHHHHHHHCCCeEEEEecCCCCC-hhh
Confidence 4578999999998873 3333344455677778889999999964 34455566777788877654432222222 112
Q ss_pred HhhHHHHHHhhhC-CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEE
Q 025113 160 YETTGPEIWQDSG-GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGV 207 (257)
Q Consensus 160 ~~t~~~Ei~~ql~-~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv 207 (257)
. .+|.+++. ..||.|++..|+---= -.....+...+..-+++|
T Consensus 90 ~----~~i~~~I~~~~pdiv~vglG~PkQE-~~~~~~~~~l~~~v~i~v 133 (172)
T PF03808_consen 90 E----EAIINRINASGPDIVFVGLGAPKQE-RWIARHRQRLPAGVIIGV 133 (172)
T ss_pred H----HHHHHHHHHcCCCEEEEECCCCHHH-HHHHHHHHHCCCCEEEEE
Confidence 2 33333332 3689999999986432 233344444454445555
No 88
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=90.55 E-value=3.5 Score=33.12 Aligned_cols=120 Identities=17% Similarity=0.132 Sum_probs=69.5
Q ss_pred HHHHHHHHHHcCCcEEEEeCC-CCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhh
Q 025113 81 GVGLAFIAAARGYNLIIVMPS-TCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIH 159 (257)
Q Consensus 81 ~~alA~~a~~~g~~~~i~vp~-~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 159 (257)
|..+.++++.+|.+..--++. +.-....+.+...+.+|..+++. -+...+.++.+.+++|+...+...+-+.... .
T Consensus 11 G~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~--~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~-~ 87 (171)
T cd06533 11 GIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAK--PEVLEKAAERLRARYPGLKIVGYHHGYFGPE-E 87 (171)
T ss_pred cHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCcEEEEecCCCCChh-h
Confidence 456889999999883322322 22344566677779999999964 3444455567777787765443222222211 1
Q ss_pred HhhHHHHHHhhhC-CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEe
Q 025113 160 YETTGPEIWQDSG-GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVE 208 (257)
Q Consensus 160 ~~t~~~Ei~~ql~-~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~ 208 (257)
-.++.+++. ..||.|+++.|+---= -.....+...+..-+++|-
T Consensus 88 ----~~~i~~~I~~~~pdiv~vglG~PkQE-~~~~~~~~~l~~~v~~~vG 132 (171)
T cd06533 88 ----EEEIIERINASGADILFVGLGAPKQE-LWIARHKDRLPVPVAIGVG 132 (171)
T ss_pred ----HHHHHHHHHHcCCCEEEEECCCCHHH-HHHHHHHHHCCCCEEEEec
Confidence 122444442 3699999999985422 3334445555555566663
No 89
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=90.19 E-value=3.2 Score=36.41 Aligned_cols=88 Identities=24% Similarity=0.291 Sum_probs=64.8
Q ss_pred eEEEEeCCCCC-----CCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HH
Q 025113 33 RIAAKLETMEP-----CSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-ME 106 (257)
Q Consensus 33 ~l~~K~E~~~p-----tGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~ 106 (257)
+-++|.++.-| |-+.-=-.|+-|+++..+-+ +|...|=-++.+--|+++--.|+.+|++.+-++..... ..
T Consensus 124 ~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~---~GD~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~iee 200 (354)
T KOG0025|consen 124 SDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLN---KGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEE 200 (354)
T ss_pred cceEEcCCcCChhhhheeccCchHHHHHHHHHHhcC---CCCeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHH
Confidence 46777777555 44555557888999988754 46543323455566777778899999999999988654 55
Q ss_pred HHHHHHHCCCEEEEECC
Q 025113 107 RRIVLRALGAEIILADS 123 (257)
Q Consensus 107 ~~~~l~~~Ga~v~~~~~ 123 (257)
..++|+.+||+-++.+.
T Consensus 201 l~~~Lk~lGA~~ViTee 217 (354)
T KOG0025|consen 201 LKKQLKSLGATEVITEE 217 (354)
T ss_pred HHHHHHHcCCceEecHH
Confidence 67789999999998884
No 90
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=89.33 E-value=4.1 Score=30.37 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=22.8
Q ss_pred CCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCC
Q 025113 174 KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSE 211 (257)
Q Consensus 174 ~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~ 211 (257)
.+|++|-++|++.++.-. ++...+.=+++.+.-.+
T Consensus 58 ~~d~vid~~g~~~~~~~~---~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 58 GVDVVIDCVGSGDTLQEA---IKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SEEEEEESSSSHHHHHHH---HHHEEEEEEEEEESSTS
T ss_pred cceEEEEecCcHHHHHHH---HHHhccCCEEEEEEccC
Confidence 599999999987766544 44455554555554443
No 91
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=88.85 E-value=5.2 Score=35.64 Aligned_cols=58 Identities=28% Similarity=0.463 Sum_probs=44.8
Q ss_pred cCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (257)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~ 122 (257)
...+++|.+.+|.+.+|.-|..+--.|+.+|...++.+. +..+.+.++.+||+.+..-
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~---s~~k~~~~~~lGAd~vi~y 194 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVS---SSEKLELLKELGADHVINY 194 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEec---CHHHHHHHHhcCCCEEEcC
Confidence 567788888889999999999999999999984444332 3356668999999777654
No 92
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=88.60 E-value=7.1 Score=34.71 Aligned_cols=59 Identities=17% Similarity=0.274 Sum_probs=42.4
Q ss_pred HHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (257)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~ 122 (257)
..+..+++|.+.+|... |..|.+++.+|+..|.+++++ ..++.+++.++.+|++.....
T Consensus 159 ~~~~~~~~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~---~~~~~~~~~~~~~Ga~~~i~~ 217 (349)
T TIGR03201 159 AVQAGLKKGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAI---DIDPEKLEMMKGFGADLTLNP 217 (349)
T ss_pred HHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEE---cCCHHHHHHHHHhCCceEecC
Confidence 33455677766555555 999999999999999975443 335667888889999765443
No 93
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=88.23 E-value=9.1 Score=33.32 Aligned_cols=59 Identities=20% Similarity=0.270 Sum_probs=44.7
Q ss_pred HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (257)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~ 122 (257)
+...+.+|...+|.+.+|..|.++.-.|+.+|.+++++. .++.+.+.++.+|++-+...
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~---~s~~~~~~l~~~Ga~~vi~~ 195 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCA---GSDDKVAWLKELGFDAVFNY 195 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCCEEEeC
Confidence 445677887777777789999999999999999865543 34568888888999655444
No 94
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=88.20 E-value=4.2 Score=36.23 Aligned_cols=54 Identities=17% Similarity=0.283 Sum_probs=41.9
Q ss_pred CCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 025113 65 ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (257)
Q Consensus 65 ~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~ 119 (257)
+.+|.+.+|. ..|..|...+..++..|.+++++.+...++.+++.++.+|++.+
T Consensus 170 ~~~g~~vlI~-G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v 223 (355)
T cd08230 170 TWNPRRALVL-GAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV 223 (355)
T ss_pred cCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe
Confidence 3456565555 56999999999999999987776665557788999999999864
No 95
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=85.93 E-value=9 Score=31.82 Aligned_cols=50 Identities=30% Similarity=0.472 Sum_probs=41.3
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (257)
Q Consensus 72 vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~ 122 (257)
+|++.+|+.|..++.+....+.++++++.+. +....+.++..|++++..+
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d 51 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP-SSDRAQQLQALGAEVVEAD 51 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSS-HHHHHHHHHHTTTEEEES-
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEecc-chhhhhhhhcccceEeecc
Confidence 5778899999999999888999999999876 4456677888999988555
No 96
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=85.82 E-value=9.5 Score=30.92 Aligned_cols=115 Identities=14% Similarity=0.082 Sum_probs=64.3
Q ss_pred HHHHHHHHHcCCcEEEEeCC-CCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEe--CCCCCCcchHh
Q 025113 82 VGLAFIAAARGYNLIIVMPS-TCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLL--RQFENPANPKI 158 (257)
Q Consensus 82 ~alA~~a~~~g~~~~i~vp~-~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 158 (257)
..+.++++.+|.+..--++. +.-...++.....|.+|..+++. -....+.++.+.+++|+.... ++|.++..
T Consensus 14 ~~iv~~~r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~--~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~--- 88 (177)
T TIGR00696 14 IGVVWGLKLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGK--PDVLQQLKVKLIKEYPKLKIVGAFGPLEPEE--- 88 (177)
T ss_pred HHHHHHHHHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCCEEEEECCCCChHH---
Confidence 56889999998664322221 11233455566788999999964 344455667777778765433 22222111
Q ss_pred hHhhHHHHHHhhhC-CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEE
Q 025113 159 HYETTGPEIWQDSG-GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGV 207 (257)
Q Consensus 159 g~~t~~~Ei~~ql~-~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv 207 (257)
-.++.+++. ..+|.++|+.|+=--= -...-.+...+..-++||
T Consensus 89 -----~~~i~~~I~~s~~dil~VglG~PkQE-~~~~~~~~~~~~~v~~gv 132 (177)
T TIGR00696 89 -----RKAALAKIARSGAGIVFVGLGCPKQE-IWMRNHRHLKPDAVMIGV 132 (177)
T ss_pred -----HHHHHHHHHHcCCCEEEEEcCCcHhH-HHHHHhHHhCCCcEEEEe
Confidence 133444442 3599999999984311 111223344444555665
No 97
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=85.77 E-value=14 Score=33.71 Aligned_cols=56 Identities=27% Similarity=0.334 Sum_probs=42.3
Q ss_pred HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 025113 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (257)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~ 119 (257)
....+.+|.+.+| ...|..|.+++..|+.+|.+.+++.. ..+.+++..+.+|++.+
T Consensus 179 ~~~~~~~g~~VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~d--~~~~r~~~a~~~Ga~~v 234 (393)
T TIGR02819 179 VTAGVGPGSTVYI-AGAGPVGLAAAASAQLLGAAVVIVGD--LNPARLAQARSFGCETV 234 (393)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCceEEEeC--CCHHHHHHHHHcCCeEE
Confidence 3455677766555 67799999999999999998766442 24678888999999853
No 98
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=85.66 E-value=21 Score=34.85 Aligned_cols=51 Identities=16% Similarity=0.270 Sum_probs=40.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (257)
.+++....|..|+.+|-.-...|++++++ +.++.+.+.++.+|.+++.-+.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvI---D~d~~~v~~~~~~g~~v~~GDa 451 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVL---DHDPDHIETLRKFGMKVFYGDA 451 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHHhcCCeEEEEeC
Confidence 45888999999999999888889988776 3456677777888877766664
No 99
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=85.35 E-value=29 Score=33.27 Aligned_cols=131 Identities=21% Similarity=0.178 Sum_probs=80.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQ 149 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (257)
.+++....|+.|+.+|-.-+..|.+++++=. ++.+.+.++..|.+++.-+..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~---d~~~~~~~~~~g~~~i~GD~~------------------------- 469 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIET---SRTRVDELRERGIRAVLGNAA------------------------- 469 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHHCCCeEEEcCCC-------------------------
Confidence 4578888999999988877777777655432 234555555555555444421
Q ss_pred CCCCcchHhhHhhHHHHHHhhhC-CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCcccceeccc
Q 025113 150 FENPANPKIHYETTGPEIWQDSG-GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGLFIFISY 228 (257)
Q Consensus 150 ~~~~~~~~~g~~t~~~Ei~~ql~-~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~~~~~i~~~ 228 (257)
+ .|++++.+ .+.|.+++.++.-....-+....++.+|+.++++-... +...+.++.
T Consensus 470 -----~---------~~~L~~a~i~~a~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~~~---------~~~~~~l~~ 526 (558)
T PRK10669 470 -----N---------EEIMQLAHLDCARWLLLTIPNGYEAGEIVASAREKRPDIEIIARAHY---------DDEVAYITE 526 (558)
T ss_pred -----C---------HHHHHhcCccccCEEEEEcCChHHHHHHHHHHHHHCCCCeEEEEECC---------HHHHHHHHH
Confidence 1 22233321 35688888887755444455566777888888875321 122344455
Q ss_pred cCCeEEEeChHHHHHHHHHHHhh
Q 025113 229 LFRSFVLVDDGAVVHLHNYLLLH 251 (257)
Q Consensus 229 ~~~~~v~v~d~e~~~a~~~l~~~ 251 (257)
...+.+..+++++.+.+....++
T Consensus 527 ~Gad~vv~p~~~~a~~i~~~l~~ 549 (558)
T PRK10669 527 RGANQVVMGEREIARTMLELLET 549 (558)
T ss_pred cCCCEEEChHHHHHHHHHHHhcC
Confidence 66667777788877777665554
No 100
>COG0379 NadA Quinolinate synthase [Coenzyme metabolism]
Probab=85.20 E-value=27 Score=31.02 Aligned_cols=165 Identities=20% Similarity=0.114 Sum_probs=94.8
Q ss_pred EeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCC-EEEEECCCCCHHH--HHHHHHHHHHhCCCeE-EeCC
Q 025113 74 EVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGA-EIILADSALRFEE--ILEKGEEILKKTPDGY-LLRQ 149 (257)
Q Consensus 74 ~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga-~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~ 149 (257)
+.+|+|.-.-+-++ .+-+-++|.|+.--...+. +..|. +|+..+|.=-.-+ ..+...++.+++|+.. .++|
T Consensus 143 ~cTSsNAvkvVe~~---~~~~~Iif~PD~~Lg~yva--~~tg~k~ii~w~G~C~VH~~ft~~~i~~~k~~~Pda~vlvHP 217 (324)
T COG0379 143 CCTSSNAVKVVESA---LDGDKILFLPDKNLGRYVA--KQTGAKKIILWPGHCIVHEEFTAEDIEELKEKYPDAEVLVHP 217 (324)
T ss_pred EEecchHHHHHHhc---cCCCcEEEcCcHHHHHHHH--HHcCCCcEEEECCccchhhhcCHHHHHHHHHHCCCCEEEECC
Confidence 45667776666665 7778899999854433333 44677 9998886300001 1234556667788764 4555
Q ss_pred CCCCcchHh---hHhhHH--HHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCC--CccccCCCcc-
Q 025113 150 FENPANPKI---HYETTG--PEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSE--SAVLNGGQRG- 221 (257)
Q Consensus 150 ~~~~~~~~~---g~~t~~--~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~--~~~~~~~~~~- 221 (257)
--.+.. .. .-++++ .+..++. +.+-+++ ||=.|+.--++...|+.++|-..+.+ |+.|......
T Consensus 218 EC~~~V-v~~AD~vGST~~ii~~~~~~--~~~~~iv-----~TE~g~~~~l~~~~P~k~~~~~~~~~~~C~~Mk~itL~~ 289 (324)
T COG0379 218 ECPPEV-VELADFVGSTSQIIKAVKAS--PAQKFIV-----GTERGIVHRLQKEAPDKEFIPLPTAGAVCPTMKMITLEK 289 (324)
T ss_pred CCCHHH-HHhccccccHHHHHHHHhcC--CCceEEE-----EecHHHHHHHHHHCCCCeEEccCCCCCcChhhhhhCHHH
Confidence 322221 11 112222 2333322 3455554 34567777888899999999998886 4444321111
Q ss_pred cceeccccCCeEEEeChHHHHHHHHHHHhh
Q 025113 222 LFIFISYLFRSFVLVDDGAVVHLHNYLLLH 251 (257)
Q Consensus 222 ~~~i~~~~~~~~v~v~d~e~~~a~~~l~~~ 251 (257)
-.+.+......-|.|+++-+.+|.+-|-+.
T Consensus 290 i~~~L~~~~~~eV~V~~~i~~~A~~aleRM 319 (324)
T COG0379 290 ILEALEEGGNNEVTVDEEIAERARRALERM 319 (324)
T ss_pred HHHHHHhCCCceEEeCHHHHHHHHHHHHHH
Confidence 112222222258999999999998877553
No 101
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=84.49 E-value=28 Score=32.88 Aligned_cols=123 Identities=13% Similarity=0.165 Sum_probs=75.3
Q ss_pred HHHHHHHcCCcEEEEe-----------CCCCCHHHHHHHHHCCCEEEEECCC---CCH-HHHHHHHHHHHHhCCCeE---
Q 025113 84 LAFIAAARGYNLIIVM-----------PSTCSMERRIVLRALGAEIILADSA---LRF-EEILEKGEEILKKTPDGY--- 145 (257)
Q Consensus 84 lA~~a~~~g~~~~i~v-----------p~~~~~~~~~~l~~~Ga~v~~~~~~---~~~-~~~~~~~~~~~~~~~~~~--- 145 (257)
+..+|+..|+++++.. |..+....+......|++.+....+ +.| .++++...+.+++-...+
T Consensus 262 ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~~ 341 (473)
T TIGR01064 262 MIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAYL 341 (473)
T ss_pred HHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhccchh
Confidence 4567888999988865 3445667777778889999888753 223 355555444443221111
Q ss_pred --EeCCCC-CC--cchHhhHhhHHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 025113 146 --LLRQFE-NP--ANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSES 212 (257)
Q Consensus 146 --~~~~~~-~~--~~~~~g~~t~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~ 212 (257)
|-.+.. .. ..........+.++.+.+ +.++||+.+-+|.++--++ ...|.+.|+++.+...
T Consensus 342 ~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~--~akaIVv~T~SG~TA~~vS----r~rp~~PIiAvT~~~~ 407 (473)
T TIGR01064 342 TNFNDRKNSDPKPSTITEAIALSAVEAAEKL--DAKAIVVLTESGRTARLLS----KYRPNAPIIAVTPNER 407 (473)
T ss_pred hhhhhhhcccccCCChHHHHHHHHHHHHhhc--CCCEEEEEcCChHHHHHHH----hhCCCCCEEEEcCCHH
Confidence 101100 00 011123344455666666 4789999999999876554 4578999999988764
No 102
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=84.37 E-value=16 Score=31.93 Aligned_cols=59 Identities=20% Similarity=0.316 Sum_probs=44.7
Q ss_pred HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (257)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~ 122 (257)
+.+.+.+|.+.+|.+.+|-.|.+++..|+..|.+++++.. +..+.+.++.+|++.+...
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~---s~~~~~~~~~lGa~~vi~~ 190 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKVAYLKKLGFDVAFNY 190 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEEec
Confidence 4566778877667777899999999999999998665543 4567888889999655443
No 103
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=83.98 E-value=2.5 Score=38.09 Aligned_cols=55 Identities=22% Similarity=0.240 Sum_probs=43.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~ 124 (257)
..++..+||..|.-+|+.+..++-.-.|++|..+.......+...|++++.++.+
T Consensus 41 ~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~ 95 (363)
T PF01041_consen 41 KYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDID 95 (363)
T ss_dssp SEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BE
T ss_pred CeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEecc
Confidence 4578899999999999888444444889999988888999999999999999964
No 104
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=83.36 E-value=20 Score=31.54 Aligned_cols=57 Identities=21% Similarity=0.253 Sum_probs=43.6
Q ss_pred HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH-CCCEEEE
Q 025113 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRA-LGAEIIL 120 (257)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~-~Ga~v~~ 120 (257)
+.+.+++|.+.+|.+.+|..|.++...|+.+|.++++.. .+..+.+.++. +|++-+.
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~---~~~~~~~~~~~~lGa~~vi 202 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSA---GSDEKVDLLKNKLGFDDAF 202 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHhcCCceeE
Confidence 345677888877888889999999999999999865543 34567787877 8986544
No 105
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=82.60 E-value=12 Score=32.09 Aligned_cols=53 Identities=26% Similarity=0.307 Sum_probs=38.1
Q ss_pred CCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113 65 ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (257)
Q Consensus 65 ~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~ 120 (257)
..+|.+.+|. ..|..|..++..|+.+|.+.++++ +.++.+++.++.+|++.+.
T Consensus 118 ~~~g~~VlV~-G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i 170 (280)
T TIGR03366 118 DLKGRRVLVV-GAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATALA 170 (280)
T ss_pred CCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcEec
Confidence 3466564554 568899999999999999855555 3466788888889985433
No 106
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=82.58 E-value=17 Score=30.53 Aligned_cols=73 Identities=22% Similarity=0.239 Sum_probs=46.9
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHHHHhC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA-LRFEEILEKGEEILKKT 141 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~~~~~~~~~ 141 (257)
.+.+|+..+|.-|.++|......|.+++++-.........+.+...|.++..+..+ .+.++..+..++..++.
T Consensus 9 k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK12823 9 KVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAF 82 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence 36788999999999999999889998877654322223344555667777655432 23444445555554443
No 107
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=82.42 E-value=16 Score=32.08 Aligned_cols=57 Identities=30% Similarity=0.468 Sum_probs=43.0
Q ss_pred HHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (257)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~ 120 (257)
.+...+.+|.+.+|...+|..|.+++..|+.+|.+++++... . +...++.+|++.+.
T Consensus 170 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~---~-~~~~~~~~g~~~~~ 226 (350)
T cd08274 170 LERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGA---A-KEEAVRALGADTVI 226 (350)
T ss_pred HhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCc---h-hhHHHHhcCCeEEE
Confidence 355667788777777778999999999999999996655432 2 66777889987443
No 108
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=82.38 E-value=18 Score=33.23 Aligned_cols=126 Identities=20% Similarity=0.234 Sum_probs=69.9
Q ss_pred EEeCCC-hHHHHHHHHHHHcCCcEEEEeCC-CC---C-HHHHHHHHHCCC-EEEEECCCCCHHHHHHHHHHHHHhCCCeE
Q 025113 73 IEVTSG-NTGVGLAFIAAARGYNLIIVMPS-TC---S-MERRIVLRALGA-EIILADSALRFEEILEKGEEILKKTPDGY 145 (257)
Q Consensus 73 v~~ssG-N~~~alA~~a~~~g~~~~i~vp~-~~---~-~~~~~~l~~~Ga-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (257)
+..|.| .+...+.|.....+..++.|.-+ .- + ....+....+|| +++.++....|. .+.+....+. +..
T Consensus 2 LAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~--~~~i~~aI~a--nA~ 77 (388)
T PF00764_consen 2 LAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARDEFA--EDYIFPAIKA--NAL 77 (388)
T ss_dssp EE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HHHHH--HHTHHHHHHT--T--
T ss_pred eeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHHHHH--HHHHHHHHHH--HHH
Confidence 445665 67777888888777899888843 11 2 233445677899 999999532221 1122222221 233
Q ss_pred EeCCCCC---CcchHhhHhhHHHHHHhhhCCCCCEEEE-ecCchhHHHHHHHHHHhcCCCcEEEE
Q 025113 146 LLRQFEN---PANPKIHYETTGPEIWQDSGGKVDAFIS-GIGTGGTVTGAGRFLKENNPDIKVYG 206 (257)
Q Consensus 146 ~~~~~~~---~~~~~~g~~t~~~Ei~~ql~~~~d~iv~-pvG~Gg~~aGi~~~~k~~~~~~~vig 206 (257)
|-+.|-. ...|. ......|++++. ..++|.. ++|-|--..=.-.+++.+.|+.+|++
T Consensus 78 Yeg~YpL~tsl~Rpl--Ia~~~v~~A~~~--ga~~vaHG~TgkGNDqvRFe~~~~al~P~l~via 138 (388)
T PF00764_consen 78 YEGRYPLSTSLARPL--IAKKLVEVAREE--GADAVAHGCTGKGNDQVRFELSIRALAPELKVIA 138 (388)
T ss_dssp BTTTB--CCCCHHHH--HHHHHHHHHHHH--T-SEEE----TTSSHHHHHHHHHHHHSTTSEEE-
T ss_pred hCCCccccccchHHH--HHHHHHHHHHHc--CCeEEeccCCcCCCchhHHHHHHHHhCcCCcEec
Confidence 3332211 11222 244456777776 3688886 56888888888889999999988875
No 109
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=82.19 E-value=10 Score=33.50 Aligned_cols=45 Identities=22% Similarity=0.214 Sum_probs=37.5
Q ss_pred ChHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHCCCEEEEEC
Q 025113 78 GNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIVLRALGAEIILAD 122 (257)
Q Consensus 78 GN~~~alA~~a~~~g~~~~i~vp~~~--~~~~~~~l~~~Ga~v~~~~ 122 (257)
+|.++++..+++++|++++++.|+.. ++..++.++..|+++...+
T Consensus 162 ~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 162 GRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETE 208 (301)
T ss_pred CcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEEC
Confidence 69999999999999999999999864 5555667777888887765
No 110
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=82.17 E-value=18 Score=32.22 Aligned_cols=58 Identities=21% Similarity=0.201 Sum_probs=41.7
Q ss_pred HHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (257)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~ 120 (257)
.+.+.+.+|.+.+|. ..|-.|.+++..|+.+|.+.++.+. .++.+++.++.+|++-+.
T Consensus 169 ~~~~~~~~g~~VlV~-G~g~vG~~a~~~ak~~G~~~Vi~~~--~~~~~~~~~~~~Ga~~~i 226 (358)
T TIGR03451 169 VNTGGVKRGDSVAVI-GCGGVGDAAIAGAALAGASKIIAVD--IDDRKLEWAREFGATHTV 226 (358)
T ss_pred HhccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCceEE
Confidence 345567778776666 4688999999999999987444442 346678888899996444
No 111
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=81.69 E-value=28 Score=30.60 Aligned_cols=60 Identities=27% Similarity=0.390 Sum_probs=41.2
Q ss_pred HcCCCCCC--ceEEEEeCCChHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHH-CCCEEEEECC
Q 025113 61 DKGLITPG--KTTLIEVTSGNTGVGLAFIAAARGY-NLIIVMPSTCSMERRIVLRA-LGAEIILADS 123 (257)
Q Consensus 61 ~~g~~~~g--~~~vv~~ssGN~~~alA~~a~~~g~-~~~i~vp~~~~~~~~~~l~~-~Ga~v~~~~~ 123 (257)
+.+.+++| .+.+|.+.+|..|.++...|+.+|. +++++.+ ++.+.+.++. +|++-+....
T Consensus 146 ~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~---s~~~~~~~~~~lGa~~vi~~~ 209 (345)
T cd08293 146 EKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICG---SDEKCQLLKSELGFDAAINYK 209 (345)
T ss_pred HhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHhcCCcEEEECC
Confidence 34455655 5666777779999999999999998 5555433 4556677665 8997655443
No 112
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=81.61 E-value=27 Score=31.16 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=43.3
Q ss_pred HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH-HCCCEEEEEC
Q 025113 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLR-ALGAEIILAD 122 (257)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~-~~Ga~v~~~~ 122 (257)
+.+.+++|.+.+|.+.+|..|.++...|+.+|.+++++. .++.+.+.++ .+|++-+.-.
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~---~~~~k~~~~~~~lGa~~vi~~ 211 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSA---GSSQKVDLLKNKLGFDEAFNY 211 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHhcCCCEEEEC
Confidence 345677887777777789999999999999999855432 3556777776 7999755543
No 113
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=81.34 E-value=25 Score=30.99 Aligned_cols=74 Identities=24% Similarity=0.252 Sum_probs=54.0
Q ss_pred CceEEEEeCCChHHHHHHHHHHHcCCcEEEEeC-CCCCHHHHHHHHHCC-CEEEEECCCCCHHHHHHHHHHHHHhCC
Q 025113 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP-STCSMERRIVLRALG-AEIILADSALRFEEILEKGEEILKKTP 142 (257)
Q Consensus 68 g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp-~~~~~~~~~~l~~~G-a~v~~~~~~~~~~~~~~~~~~~~~~~~ 142 (257)
|...++|++++-.|+++|.-.+++|.+..++== .....+..+.++..| ++-+.++-+ +.++..+.+++..++.+
T Consensus 38 g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis-~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDIS-DREEIYRLAKKVKKEVG 113 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCC-CHHHHHHHHHHHHHhcC
Confidence 356788999999999999999999984444322 234566777777777 455666753 57888888999888874
No 114
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=81.31 E-value=17 Score=29.22 Aligned_cols=121 Identities=21% Similarity=0.139 Sum_probs=73.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQ 149 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (257)
.+|..-..|+-|+++|-.++.+|.+++.+-|...+.. .....|.+. . ++++.. ++. +...+.-
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~---~~~~~~~~~---~---~l~ell-------~~a-Div~~~~ 99 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE---GADEFGVEY---V---SLDELL-------AQA-DIVSLHL 99 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH---HHHHTTEEE---S---SHHHHH-------HH--SEEEE-S
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh---hccccccee---e---ehhhhc-------chh-hhhhhhh
Confidence 4577788999999999999999999999888754433 233344421 1 244332 332 4444433
Q ss_pred CCCCcchHhhHhhHHHHHHhhhCCCCCEEEEecCchhHHH--HHHHHHHhcCCCcEEEEEeCCCCccc
Q 025113 150 FENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVT--GAGRFLKENNPDIKVYGVEPSESAVL 215 (257)
Q Consensus 150 ~~~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~pvG~Gg~~a--Gi~~~~k~~~~~~~vigv~~~~~~~~ 215 (257)
-.++.+ ...+..|.++++ +++.+++-+|-|+.+- .+..++++ .+..-.+.+....-++
T Consensus 100 plt~~T----~~li~~~~l~~m--k~ga~lvN~aRG~~vde~aL~~aL~~--g~i~ga~lDV~~~EP~ 159 (178)
T PF02826_consen 100 PLTPET----RGLINAEFLAKM--KPGAVLVNVARGELVDEDALLDALES--GKIAGAALDVFEPEPL 159 (178)
T ss_dssp SSSTTT----TTSBSHHHHHTS--TTTEEEEESSSGGGB-HHHHHHHHHT--TSEEEEEESS-SSSSS
T ss_pred cccccc----ceeeeeeeeecc--ccceEEEeccchhhhhhhHHHHHHhh--ccCceEEEECCCCCCC
Confidence 223332 345567888888 4789999999998764 45555554 3455556655554333
No 115
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=81.26 E-value=21 Score=31.98 Aligned_cols=59 Identities=19% Similarity=0.324 Sum_probs=41.8
Q ss_pred HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (257)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~ 122 (257)
+...+++|.+.+|.+ .|..|.+++..|+.+|.+.++.+. .++.+++.++.+|++.....
T Consensus 185 ~~~~i~~g~~VlV~G-~G~vG~~a~~lak~~G~~~Vi~~~--~~~~r~~~a~~~Ga~~~i~~ 243 (371)
T cd08281 185 NTAGVRPGQSVAVVG-LGGVGLSALLGAVAAGASQVVAVD--LNEDKLALARELGATATVNA 243 (371)
T ss_pred hccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCcEEEEc--CCHHHHHHHHHcCCceEeCC
Confidence 445677777766654 689999999999999985444432 45678888889999654433
No 116
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=81.06 E-value=29 Score=30.67 Aligned_cols=59 Identities=24% Similarity=0.372 Sum_probs=43.5
Q ss_pred HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (257)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~ 122 (257)
+...+.+|.+.+| ...|..|.++...|+.+|.+.++.+.. ++.+...++.+|++.+...
T Consensus 168 ~~~~~~~g~~vlI-~g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~v~~~ 226 (350)
T cd08256 168 DRANIKFDDVVVL-AGAGPLGLGMIGAARLKNPKKLIVLDL--KDERLALARKFGADVVLNP 226 (350)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEcC--CHHHHHHHHHcCCcEEecC
Confidence 4566777766555 667999999999999999887666554 3567778888998655433
No 117
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=80.40 E-value=32 Score=32.76 Aligned_cols=50 Identities=18% Similarity=0.221 Sum_probs=40.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~ 122 (257)
.+|+....|..|++....|+.+|-.+++ + +..+.++++.+.+|++.+.++
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a-~--D~~~~rle~aeslGA~~v~i~ 215 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRA-F--DTRPEVAEQVESMGAEFLELD 215 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEE-E--eCCHHHHHHHHHcCCeEEEec
Confidence 4588899999999999999999985333 2 356788999999999976555
No 118
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=79.71 E-value=20 Score=31.86 Aligned_cols=60 Identities=22% Similarity=0.293 Sum_probs=46.3
Q ss_pred HHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH-CCCEEEEEC
Q 025113 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRA-LGAEIILAD 122 (257)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~-~Ga~v~~~~ 122 (257)
.+-|..++|.+.+|++.+|-.|.-+.-.|+..|.+++-+.. .++|.+.+.. +|-+..+--
T Consensus 143 l~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaG---g~eK~~~l~~~lGfD~~idy 203 (340)
T COG2130 143 LDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAG---GAEKCDFLTEELGFDAGIDY 203 (340)
T ss_pred HHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecC---CHHHHHHHHHhcCCceeeec
Confidence 44567778888889999999999999999999998887654 4677777776 666555433
No 119
>PRK12743 oxidoreductase; Provisional
Probab=78.96 E-value=19 Score=30.19 Aligned_cols=72 Identities=14% Similarity=0.228 Sum_probs=48.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHHHHhC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADSA-LRFEEILEKGEEILKKT 141 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~--~~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~~~~~~~~~ 141 (257)
+.+|+.++|.-|.+++......|.+++++...+.+ ....+.++.+|.++..+..+ .+.++..+..++..++.
T Consensus 4 ~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (256)
T PRK12743 4 VAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRL 78 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 56888999999999999999999988777654322 23345667788887766543 23444445555555543
No 120
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=78.96 E-value=12 Score=33.01 Aligned_cols=57 Identities=21% Similarity=0.140 Sum_probs=41.1
Q ss_pred HHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (257)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~ 120 (257)
.....+++|.+.+|.. .|..|.+++..|+..|.+++++.+ ++.+++.++.+|++.+.
T Consensus 158 ~~~~~~~~g~~VlV~G-~g~iG~~a~~~a~~~G~~vi~~~~---~~~~~~~a~~~Ga~~vi 214 (329)
T TIGR02822 158 LLRASLPPGGRLGLYG-FGGSAHLTAQVALAQGATVHVMTR---GAAARRLALALGAASAG 214 (329)
T ss_pred HHhcCCCCCCEEEEEc-CCHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHhCCceec
Confidence 3445677887766655 488898888889999987544322 45578889999997654
No 121
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=78.57 E-value=28 Score=28.59 Aligned_cols=68 Identities=21% Similarity=0.179 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHc--CCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHH-HHCCCEEE
Q 025113 49 DRIAYSMIKDAEDK--GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVL-RALGAEII 119 (257)
Q Consensus 49 ~R~a~~~~~~a~~~--g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l-~~~Ga~v~ 119 (257)
-+|+.+.+..+.+. +......++++.-..||.|.++|......|.+++++ .. +..+.+.+ ..+|++.+
T Consensus 6 g~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~-D~--~~~~~~~~~~~~g~~~v 76 (200)
T cd01075 6 AYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVA-DI--NEEAVARAAELFGATVV 76 (200)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE-cC--CHHHHHHHHHHcCCEEE
Confidence 36777777777665 222222356777888999999999999999987743 32 33444444 33476543
No 122
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=78.31 E-value=25 Score=31.10 Aligned_cols=60 Identities=17% Similarity=0.196 Sum_probs=41.0
Q ss_pred HHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (257)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~ 122 (257)
.++....+|.+.+|. .+|..|++....++.+|.+.++.+. .++.+++.++.+|++.+...
T Consensus 162 l~~~~~~~g~~VlV~-G~G~vG~~aiqlak~~G~~~Vi~~~--~~~~~~~~a~~lGa~~vi~~ 221 (343)
T PRK09880 162 AHQAGDLQGKRVFVS-GVGPIGCLIVAAVKTLGAAEIVCAD--VSPRSLSLAREMGADKLVNP 221 (343)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEEe--CCHHHHHHHHHcCCcEEecC
Confidence 333334466665555 4699999999999999986554443 34678888889999765433
No 123
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=78.26 E-value=18 Score=30.10 Aligned_cols=65 Identities=22% Similarity=0.219 Sum_probs=40.5
Q ss_pred CCChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhC
Q 025113 76 TSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADSALRFEEILEKGEEILKKT 141 (257)
Q Consensus 76 ssGN~~~alA~~a~~~g~~~~i~vp~~~~--~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~ 141 (257)
+++.-|.++|......|.++++.-..... ....+..+.+|.+++.++-. +.++..+..++..+..
T Consensus 4 ~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~-~~~~v~~~~~~~~~~~ 70 (241)
T PF13561_consen 4 SSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLS-DEESVEALFDEAVERF 70 (241)
T ss_dssp STSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTT-SHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCc-chHHHHHHHHHHHhhc
Confidence 45778888888888889888887665432 22334455678887666642 3344444445554443
No 124
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=77.78 E-value=39 Score=29.81 Aligned_cols=59 Identities=32% Similarity=0.387 Sum_probs=40.9
Q ss_pred HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (257)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~ 122 (257)
+...+.+|.+.+|.+ .|..|.+++..|+.+|.+.++++. .++.+.+.++.+|++.+...
T Consensus 166 ~~~~~~~g~~vlI~g-~g~vG~~a~q~a~~~G~~~v~~~~--~~~~~~~~~~~~ga~~~i~~ 224 (351)
T cd08233 166 RRSGFKPGDTALVLG-AGPIGLLTILALKAAGASKIIVSE--PSEARRELAEELGATIVLDP 224 (351)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEECC
Confidence 445567776655654 688999999999999985444442 35566777778898765543
No 125
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=77.53 E-value=5 Score=31.59 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=32.6
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCC
Q 025113 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALG 115 (257)
Q Consensus 72 vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~G 115 (257)
|..-.+||+|.|+|...+..|.+++++.++. ...+.++..+
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~---~~~~~i~~~~ 42 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE---EQIEEINETR 42 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH---HHHHHHHHHT
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH---HHHHHHHHhC
Confidence 5677899999999999999999999998864 4555555433
No 126
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=77.45 E-value=50 Score=32.13 Aligned_cols=96 Identities=14% Similarity=0.214 Sum_probs=59.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQ 149 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (257)
.+++....|..|+.++-.-...|++++++= .++.+.+.++.+|.+++.-+.. -
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID---~d~~~v~~~~~~g~~v~~GDat--~---------------------- 453 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLE---RDISAVNLMRKYGYKVYYGDAT--Q---------------------- 453 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEE---CCHHHHHHHHhCCCeEEEeeCC--C----------------------
Confidence 357888899999998888888888876643 2345666667677666555432 1
Q ss_pred CCCCcchHhhHhhHHHHHHhhhC-CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEE
Q 025113 150 FENPANPKIHYETTGPEIWQDSG-GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGV 207 (257)
Q Consensus 150 ~~~~~~~~~g~~t~~~Ei~~ql~-~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv 207 (257)
.|++++.+ .+.|.+|+..+.=....-+....|+++|+.+|++-
T Consensus 454 ---------------~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaR 497 (601)
T PRK03659 454 ---------------LELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILAR 497 (601)
T ss_pred ---------------HHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 22222221 24566666666644444455556667777777664
No 127
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=77.43 E-value=58 Score=29.77 Aligned_cols=70 Identities=21% Similarity=0.216 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCC
Q 025113 48 KDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (257)
Q Consensus 48 K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~ 124 (257)
+.+-..-.+.+.. | ....+..+||..+..+|+.+-..|=.-.|++|..+-......+-..||+.+.++.+
T Consensus 35 ~v~~FE~~~ae~~--G-----~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid 104 (374)
T COG0399 35 FVRRFEQAFAEYL--G-----VKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDID 104 (374)
T ss_pred HHHHHHHHHHHHh--C-----CCeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHcCCeEEEEecC
Confidence 5555444444432 3 35678889999999999886557777789999999999999999999999999964
No 128
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=76.99 E-value=31 Score=29.74 Aligned_cols=57 Identities=32% Similarity=0.385 Sum_probs=40.4
Q ss_pred HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (257)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~ 120 (257)
+...+.+|...+|...+|..|.+++..|+.+|.+.+++... ..+.+.++.+|++-+.
T Consensus 133 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~~~~ 189 (324)
T cd08292 133 DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRR---DAGVAELRALGIGPVV 189 (324)
T ss_pred HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecC---HHHHHHHHhcCCCEEE
Confidence 34566777776666778999999999999999987666543 3345555667875443
No 129
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=76.79 E-value=35 Score=29.94 Aligned_cols=53 Identities=21% Similarity=0.272 Sum_probs=38.5
Q ss_pred CCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113 64 LITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (257)
Q Consensus 64 ~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~ 120 (257)
.+.++...+|.. +|..|.++...|+.+|.+++++.+ +..+++.++.+|++-+.
T Consensus 160 ~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i 212 (333)
T cd08296 160 GAKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISR---GSDKADLARKLGAHHYI 212 (333)
T ss_pred CCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHcCCcEEe
Confidence 456666655555 899999999999999998655433 34567777889985443
No 130
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=76.59 E-value=44 Score=27.94 Aligned_cols=92 Identities=14% Similarity=0.117 Sum_probs=59.6
Q ss_pred HHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHH
Q 025113 52 AYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEIL 131 (257)
Q Consensus 52 a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~ 131 (257)
+.-+.....+.|. ..-=++..|--...++...++.+. ++.|=...=.++...++....||+.++.++- -.+..
T Consensus 27 a~~~a~Ali~gGi----~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~--~~ev~ 99 (211)
T COG0800 27 ALPLAKALIEGGI----PAIEITLRTPAALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQFIVSPGL--NPEVA 99 (211)
T ss_pred HHHHHHHHHHcCC----CeEEEecCCCCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCEEECCCC--CHHHH
Confidence 4455555566553 122255677788888888899888 4444333334888999999999999999963 23333
Q ss_pred HHHHHHHHhCCCeEEeCCCCCCcc
Q 025113 132 EKGEEILKKTPDGYLLRQFENPAN 155 (257)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~ 155 (257)
+.+.++ +..+++...+|.-
T Consensus 100 ----~~a~~~-~ip~~PG~~TptE 118 (211)
T COG0800 100 ----KAANRY-GIPYIPGVATPTE 118 (211)
T ss_pred ----HHHHhC-CCcccCCCCCHHH
Confidence 333444 6777777666543
No 131
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=76.55 E-value=34 Score=29.95 Aligned_cols=54 Identities=24% Similarity=0.276 Sum_probs=39.5
Q ss_pred CCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113 64 LITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (257)
Q Consensus 64 ~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~ 120 (257)
.+.++...+|....+..|.+++..|+.+|.+++++.+. +.+.+.++.+|++-+.
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~v~ 215 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVG---DEKLELAKELGADAFV 215 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC---HHHHHHHHHcCCcEEE
Confidence 56677776777777789999999999999987665443 3566666778875443
No 132
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=76.39 E-value=36 Score=28.48 Aligned_cols=73 Identities=22% Similarity=0.251 Sum_probs=46.5
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHhC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKKT 141 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~~ 141 (257)
.+.+|+..+|.-|.++|..-...|.+++++......+...+.+...|.++..+..+- +.++..+..++..+..
T Consensus 16 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 89 (258)
T PRK06935 16 KVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEF 89 (258)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 467889999999999999988899998887665222223344555677666555332 3344444455554443
No 133
>PRK05993 short chain dehydrogenase; Provisional
Probab=75.92 E-value=49 Score=28.18 Aligned_cols=67 Identities=24% Similarity=0.213 Sum_probs=44.9
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHH
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILK 139 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~ 139 (257)
...+|++.+|.-|.++|......|.+++++... ..+.+.++..|.+++.++-. +.++..+..++..+
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~---~~~~~~l~~~~~~~~~~Dl~-d~~~~~~~~~~~~~ 71 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRK---EEDVAALEAEGLEAFQLDYA-EPESIAALVAQVLE 71 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHCCceEEEccCC-CHHHHHHHHHHHHH
Confidence 356888999999999999988899988877543 33455566667777766643 33333344444433
No 134
>PLN02740 Alcohol dehydrogenase-like
Probab=75.43 E-value=38 Score=30.56 Aligned_cols=57 Identities=23% Similarity=0.228 Sum_probs=40.7
Q ss_pred HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (257)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~ 120 (257)
+...+++|.+.+|. ..|.-|.+++..|+.+|.+-++.+. .++.+++.++.+|++.+.
T Consensus 192 ~~~~~~~g~~VlV~-G~G~vG~~a~q~ak~~G~~~Vi~~~--~~~~r~~~a~~~Ga~~~i 248 (381)
T PLN02740 192 NTANVQAGSSVAIF-GLGAVGLAVAEGARARGASKIIGVD--INPEKFEKGKEMGITDFI 248 (381)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCCcEEEEc--CChHHHHHHHHcCCcEEE
Confidence 44567788665555 4699999999999999985333332 245678888889996544
No 135
>PRK07109 short chain dehydrogenase; Provisional
Probab=75.40 E-value=20 Score=31.79 Aligned_cols=73 Identities=16% Similarity=0.176 Sum_probs=47.5
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHhC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKKT 141 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~-~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~~ 141 (257)
...+|+..+|--|.++|......|.+++++..... .....+.++..|+++..+..+- +.++..+.+++..++.
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 36688899999999999998889998877765421 1223455667788887665432 3333444444444443
No 136
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=75.34 E-value=28 Score=29.03 Aligned_cols=56 Identities=16% Similarity=0.105 Sum_probs=41.0
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEECCC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSA 124 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~-~~~~~~~l~~~Ga~v~~~~~~ 124 (257)
.+.+|+.++|..|.+++......|.+++++..... .....+.++..|.++..+..+
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 64 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMD 64 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECC
Confidence 46789999999999999999999998777655432 233455566778888766543
No 137
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=75.18 E-value=24 Score=32.07 Aligned_cols=57 Identities=32% Similarity=0.395 Sum_probs=42.9
Q ss_pred CCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (257)
Q Consensus 63 g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~ 122 (257)
..+.+|...+|...+|..|.+++..|+.+|.+.+++. .+..+.+.++.+|+..+.-.
T Consensus 185 ~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~---~~~~~~~~~~~~g~~~~v~~ 241 (398)
T TIGR01751 185 ATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVV---SSPEKAEYCRELGAEAVIDR 241 (398)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEc---CCHHHHHHHHHcCCCEEecC
Confidence 4566777767777789999999999999999875543 34567778888998766543
No 138
>PRK07478 short chain dehydrogenase; Provisional
Probab=75.07 E-value=31 Score=28.79 Aligned_cols=73 Identities=15% Similarity=0.078 Sum_probs=46.5
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHHHHhC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADSA-LRFEEILEKGEEILKKT 141 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~~~~~~~~~ 141 (257)
.+.+|+..+|.-|.++|..-...|.+++++.....+ ......++..|.++..+..+ .+.++..+..++..++.
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERF 81 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 366888899999999999988899987776543211 22234556667777666543 23444444555555543
No 139
>PRK07062 short chain dehydrogenase; Provisional
Probab=74.95 E-value=47 Score=27.85 Aligned_cols=33 Identities=12% Similarity=0.165 Sum_probs=27.6
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~ 101 (257)
...+|+..+|.-|.++|......|.+++++...
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~ 41 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRD 41 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 467889999999999999988899988776654
No 140
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=74.84 E-value=34 Score=25.82 Aligned_cols=97 Identities=11% Similarity=0.078 Sum_probs=51.2
Q ss_pred HHHHHHcCCcEEEEeCCCCCHHHHHH-HHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhH
Q 025113 85 AFIAAARGYNLIIVMPSTCSMERRIV-LRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETT 163 (257)
Q Consensus 85 A~~a~~~g~~~~i~vp~~~~~~~~~~-l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (257)
+...+..+.+..|+............ ....+.+++.=.+ +++.+++..+-+.+.+.-....+-..|-|..... .
T Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Q~g-~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~~----~ 77 (122)
T PF09837_consen 3 AALAQADGADVVLAYTPDGDHAAFRQLWLPSGFSFFPQQG-GDLGERMANAFQQAARGYEPVVLIGSDCPDLTPD----D 77 (122)
T ss_dssp -----TSSSEEEEEE----TTHHHHHHHH-TTSEEEE--S-SSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--HH----H
T ss_pred cccccCCCcCEEEEEcCCccHHHHhccccCCCCEEeecCC-CCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHH----H
Confidence 44566678888888866544444433 4445666665544 6799999888776633324566767777776322 2
Q ss_pred HHHHHhhhCCCCCEEEEecCchhH
Q 025113 164 GPEIWQDSGGKVDAFISGIGTGGT 187 (257)
Q Consensus 164 ~~Ei~~ql~~~~d~iv~pvG~Gg~ 187 (257)
-.+.++.+ ...|.|+.|+--||-
T Consensus 78 l~~A~~~L-~~~d~VlgPa~DGGy 100 (122)
T PF09837_consen 78 LEQAFEAL-QRHDVVLGPAEDGGY 100 (122)
T ss_dssp HHHHHHHT-TT-SEEEEEBTTSSE
T ss_pred HHHHHHHh-ccCCEEEeeccCCCE
Confidence 23344455 345999999988773
No 141
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=74.80 E-value=41 Score=29.49 Aligned_cols=60 Identities=27% Similarity=0.342 Sum_probs=41.5
Q ss_pred HHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (257)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~ 122 (257)
.+...+.+|.+.+|. ..|-.|.+++..|+.+|.+-++++. .++.+.+.++.+|++.+...
T Consensus 156 l~~~~~~~g~~vlV~-G~G~vG~~~~~~ak~~G~~~vi~~~--~~~~~~~~~~~~ga~~~i~~ 215 (339)
T cd08239 156 LRRVGVSGRDTVLVV-GAGPVGLGALMLARALGAEDVIGVD--PSPERLELAKALGADFVINS 215 (339)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEEcC
Confidence 344456777676666 4689999999999999998333332 34567788888998655433
No 142
>PRK07454 short chain dehydrogenase; Provisional
Probab=74.44 E-value=38 Score=27.96 Aligned_cols=71 Identities=25% Similarity=0.230 Sum_probs=45.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK 140 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~-~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~ 140 (257)
..+|+.++|..|.+++......|.+++++..... .....+.++..+.++..+..+- +.++..+..++..+.
T Consensus 8 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (241)
T PRK07454 8 RALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQ 80 (241)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 5678889999999999999999998888765321 1222334455666666555432 344444445555444
No 143
>PRK06139 short chain dehydrogenase; Provisional
Probab=74.31 E-value=20 Score=31.90 Aligned_cols=71 Identities=20% Similarity=0.211 Sum_probs=45.4
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHH
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSAL-RFEEILEKGEEILK 139 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~-~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~ 139 (257)
...+|+..+|--|.++|......|.+++++..... .....+.++..|+++..+..+- +.++..+.+++..+
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~ 80 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAAS 80 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 46688889999999999999999999877655322 1223455667888876554322 23333334444433
No 144
>PRK08628 short chain dehydrogenase; Provisional
Probab=74.30 E-value=33 Score=28.62 Aligned_cols=72 Identities=19% Similarity=0.148 Sum_probs=46.5
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK 140 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~ 140 (257)
...+|+..+|-.|.++|..-...|.+++++..........+.++..|.++..+..+- +.++..+...++.+.
T Consensus 8 ~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAK 80 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 366888899999999999988899998887654333334456666787776665432 233333334444443
No 145
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=74.29 E-value=56 Score=28.62 Aligned_cols=56 Identities=29% Similarity=0.449 Sum_probs=40.2
Q ss_pred cCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (257)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~ 120 (257)
...+.+|...+| ..+|..|.++...|+..|.+.++.+... +.+.+.++.+|++-+.
T Consensus 163 ~~~~~~g~~vlI-~g~g~vg~~~~~lak~~G~~~v~~~~~~--~~~~~~~~~~ga~~v~ 218 (345)
T cd08287 163 SAGVRPGSTVVV-VGDGAVGLCAVLAAKRLGAERIIAMSRH--EDRQALAREFGATDIV 218 (345)
T ss_pred hcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEECCC--HHHHHHHHHcCCceEe
Confidence 445666766666 4589999999999999999865555443 4567777889984333
No 146
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=74.28 E-value=58 Score=28.24 Aligned_cols=57 Identities=23% Similarity=0.227 Sum_probs=41.2
Q ss_pred HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (257)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~ 120 (257)
+.+.+.+|...+|....|..|.++...|+.+|++++.+.+ ++.+...++.+|++-+.
T Consensus 134 ~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~---~~~~~~~~~~~g~~~~~ 190 (327)
T PRK10754 134 KTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---SAQKAQRAKKAGAWQVI 190 (327)
T ss_pred hhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHCCCCEEE
Confidence 3456777777666667899999999999999998665543 34566667778874433
No 147
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=74.23 E-value=32 Score=28.85 Aligned_cols=72 Identities=18% Similarity=0.217 Sum_probs=47.1
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHHHHhC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA-LRFEEILEKGEEILKKT 141 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~~~~~~~~~ 141 (257)
...+|+..++.-|.++|......|.+++++-... .+...+.++..|.++..+..+ .+.++..+..++..++.
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE-APETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVM 81 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch-HHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 4678899999999999999899999988764432 233345566678777655532 23444444445544443
No 148
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=74.14 E-value=30 Score=29.92 Aligned_cols=50 Identities=22% Similarity=0.312 Sum_probs=36.1
Q ss_pred CceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (257)
Q Consensus 68 g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~ 120 (257)
+.+.+|...+|..|.+++..|+..|.++++... ++.+.+.++.+|++-+.
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~v~ 196 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTG---KADAADYLKKLGAKEVI 196 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEec---CHHHHHHHHHcCCCEEE
Confidence 445566667799999999999999998655433 34567777888985443
No 149
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=73.97 E-value=74 Score=29.32 Aligned_cols=99 Identities=17% Similarity=0.050 Sum_probs=55.6
Q ss_pred CCCCCCChhhHHHHHHHHHHHHcCCCC-CCceEEEEeCCChHHHH--HHHHHHHcCCcEEEEeCCCCC-H----------
Q 025113 40 TMEPCSSVKDRIAYSMIKDAEDKGLIT-PGKTTLIEVTSGNTGVG--LAFIAAARGYNLIIVMPSTCS-M---------- 105 (257)
Q Consensus 40 ~~~ptGS~K~R~a~~~~~~a~~~g~~~-~g~~~vv~~ssGN~~~a--lA~~a~~~g~~~~i~vp~~~~-~---------- 105 (257)
+-.|.|+.+ .....+.....+|.+. .+...+|+..++..|.| +|.+. ..|..++++.-...+ .
T Consensus 14 ~~hp~gc~~--~v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~ 90 (398)
T PRK13656 14 TAHPVGCEA--NVKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYN 90 (398)
T ss_pred CCCCHHHHH--HHHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccch
Confidence 455677533 3445556666677763 34566778888778877 56666 678887776522111 1
Q ss_pred --HHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHhC
Q 025113 106 --ERRIVLRALGAEIILADSAL-RFEEILEKGEEILKKT 141 (257)
Q Consensus 106 --~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~~ 141 (257)
...+.++..|..+..+..+- +.++..+..++..++.
T Consensus 91 ~~a~~~~a~~~G~~a~~i~~DVss~E~v~~lie~I~e~~ 129 (398)
T PRK13656 91 SAAFDKFAKAAGLYAKSINGDAFSDEIKQKVIELIKQDL 129 (398)
T ss_pred HHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 12345567787765554322 2333444445555544
No 150
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=73.89 E-value=23 Score=30.24 Aligned_cols=25 Identities=8% Similarity=-0.016 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhc-CCCcEEEEEeCCC
Q 025113 187 TVTGAGRFLKEN-NPDIKVYGVEPSE 211 (257)
Q Consensus 187 ~~aGi~~~~k~~-~~~~~vigv~~~~ 211 (257)
++..+++.++.+ .+.--++...=.+
T Consensus 122 S~~~lak~a~~lM~~ggSiltLtYlg 147 (259)
T COG0623 122 SFTALAKAARPLMNNGGSILTLTYLG 147 (259)
T ss_pred hHHHHHHHHHHhcCCCCcEEEEEecc
Confidence 345566665543 3334444443333
No 151
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=73.85 E-value=20 Score=28.37 Aligned_cols=46 Identities=17% Similarity=0.246 Sum_probs=36.3
Q ss_pred CChHHHHHHHHHHHcCCcEEEEeCCC--CCH--HHH----HHHHHCCCEEEEEC
Q 025113 77 SGNTGVGLAFIAAARGYNLIIVMPST--CSM--ERR----IVLRALGAEIILAD 122 (257)
Q Consensus 77 sGN~~~alA~~a~~~g~~~~i~vp~~--~~~--~~~----~~l~~~Ga~v~~~~ 122 (257)
.+|.+.+++..++.+|..++++.|+. .++ ..+ +..+..|.++...+
T Consensus 12 ~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 65 (158)
T PF00185_consen 12 HNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD 65 (158)
T ss_dssp TSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES
T ss_pred CChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 48999999999999999999999987 454 233 33455688888885
No 152
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.78 E-value=34 Score=29.93 Aligned_cols=73 Identities=29% Similarity=0.338 Sum_probs=51.3
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHH-HHHHHCCC-E-EEEECCC-CCHHHHHHHHHHHHHhC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERR-IVLRALGA-E-IILADSA-LRFEEILEKGEEILKKT 141 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~-~~l~~~Ga-~-v~~~~~~-~~~~~~~~~~~~~~~~~ 141 (257)
...+||..|+--|.++|+--...|.+.++++...-...++ +.++..|+ + ++....+ .+.+++.+..++..++.
T Consensus 13 kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f 89 (282)
T KOG1205|consen 13 KVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF 89 (282)
T ss_pred CEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence 3678888888899999999999999999999876555555 66655544 4 6665543 23555655555555554
No 153
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=73.71 E-value=45 Score=29.41 Aligned_cols=58 Identities=21% Similarity=0.192 Sum_probs=41.9
Q ss_pred HHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (257)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~ 120 (257)
.+...+.+|.+.+|. ..|..|.++...|+..|.+.++.+.. ++.+++.++.+|++-+.
T Consensus 153 ~~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~i 210 (347)
T PRK10309 153 FHLAQGCEGKNVIII-GAGTIGLLAIQCAVALGAKSVTAIDI--NSEKLALAKSLGAMQTF 210 (347)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCceEe
Confidence 344556677676666 57999999999999999986555432 55677778889986544
No 154
>PRK08589 short chain dehydrogenase; Validated
Probab=73.65 E-value=26 Score=29.83 Aligned_cols=73 Identities=16% Similarity=0.133 Sum_probs=46.3
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHhC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKKT 141 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~~ 141 (257)
.+.+|+..+|--|.++|......|.+++++-.........+.++..|.++..+..+- +.++..+..++..++.
T Consensus 7 k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQF 80 (272)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 467889999999999999988899988887655212223455566676666554322 2334444455554443
No 155
>PRK06182 short chain dehydrogenase; Validated
Probab=73.65 E-value=55 Score=27.69 Aligned_cols=69 Identities=22% Similarity=0.229 Sum_probs=46.2
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKT 141 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~ 141 (257)
...+|+.++|--|.++|......|.+++++... ..+++.+...+.+++..+-. +.++..+..++..++.
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~l~~~~~~~~~~~~~Dv~-~~~~~~~~~~~~~~~~ 72 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARR---VDKMEDLASLGVHPLSLDVT-DEASIKAAVDTIIAEE 72 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhCCCeEEEeeCC-CHHHHHHHHHHHHHhc
Confidence 366888999999999999988899988876543 33445555567777777643 3444444455554443
No 156
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=73.58 E-value=59 Score=28.05 Aligned_cols=58 Identities=26% Similarity=0.322 Sum_probs=43.4
Q ss_pred cCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (257)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~ 122 (257)
.+.+.+|...+|...+|..|.+++..|+..|.+.+++. .++.+.+.++.+|++.+...
T Consensus 135 ~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~---~~~~~~~~~~~~g~~~~~~~ 192 (334)
T PTZ00354 135 HGDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITT---SSEEKVDFCKKLAAIILIRY 192 (334)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCcEEEec
Confidence 35667777777777789999999999999999876543 34567777778998654443
No 157
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=73.52 E-value=43 Score=29.90 Aligned_cols=58 Identities=21% Similarity=0.193 Sum_probs=40.6
Q ss_pred HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 025113 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (257)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~ 121 (257)
+...+.+|.+.+|. ..|..|.+++..|+.+|.+.++.+.. ++.+++.++.+|++....
T Consensus 181 ~~~~~~~g~~VlV~-G~g~vG~~a~q~ak~~G~~~vi~~~~--~~~~~~~~~~~Ga~~~i~ 238 (369)
T cd08301 181 NVAKVKKGSTVAIF-GLGAVGLAVAEGARIRGASRIIGVDL--NPSKFEQAKKFGVTEFVN 238 (369)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCceEEc
Confidence 34566777765665 56999999999999999843333322 356788889999965443
No 158
>PRK14030 glutamate dehydrogenase; Provisional
Probab=72.88 E-value=26 Score=32.77 Aligned_cols=52 Identities=17% Similarity=0.068 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 025113 49 DRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (257)
Q Consensus 49 ~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp 100 (257)
-||+.+.+..+.+...+.....+|+....||-|..+|.....+|.+++.+..
T Consensus 208 g~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD 259 (445)
T PRK14030 208 GFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISG 259 (445)
T ss_pred HHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 4677788877665443344456788899999999999998889999888544
No 159
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=72.77 E-value=27 Score=23.72 Aligned_cols=49 Identities=22% Similarity=0.265 Sum_probs=36.7
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-----CHH----HHHHHHHCCCEEEE
Q 025113 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-----SME----RRIVLRALGAEIIL 120 (257)
Q Consensus 72 vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~-----~~~----~~~~l~~~Ga~v~~ 120 (257)
++.-.+|..|.-+|.+.+.+|.+++++.+... ++. -.+.++..|.+++.
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 56778899999999999999999999997532 122 24456667776654
No 160
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.71 E-value=49 Score=29.66 Aligned_cols=64 Identities=17% Similarity=0.252 Sum_probs=51.1
Q ss_pred HHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113 57 KDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (257)
Q Consensus 57 ~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (257)
.+|-.++.+++|.+ ++....|--|+..-..|+.+|-+=++++.- .+.+++..+.+||+++.-..
T Consensus 159 ~HAcr~~~vk~Gs~-vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~--~~~Rle~Ak~~Ga~~~~~~~ 222 (354)
T KOG0024|consen 159 VHACRRAGVKKGSK-VLVLGAGPIGLLTGLVAKAMGASDVVITDL--VANRLELAKKFGATVTDPSS 222 (354)
T ss_pred hhhhhhcCcccCCe-EEEECCcHHHHHHHHHHHHcCCCcEEEeec--CHHHHHHHHHhCCeEEeecc
Confidence 36667788888855 777888999999999999999887777654 56788888889999876553
No 161
>PRK08703 short chain dehydrogenase; Provisional
Probab=72.67 E-value=53 Score=27.07 Aligned_cols=33 Identities=33% Similarity=0.311 Sum_probs=26.5
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~ 101 (257)
.+.+|++++|..|.+++......|.+++++...
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~ 39 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGATVILVARH 39 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 366888999999999999888888887666543
No 162
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=72.49 E-value=41 Score=30.08 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=40.9
Q ss_pred HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 025113 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (257)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~ 121 (257)
+...+++|.+.+|. ..|..|.+++..|+.+|.+.++.+. .++.+++.++.+|++.+..
T Consensus 180 ~~~~~~~g~~VlV~-G~G~vG~~a~~~ak~~G~~~vi~~~--~~~~~~~~~~~lGa~~~i~ 237 (368)
T cd08300 180 NTAKVEPGSTVAVF-GLGAVGLAVIQGAKAAGASRIIGID--INPDKFELAKKFGATDCVN 237 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHcCCCEEEc
Confidence 44566777776666 4699999999999999985344332 2455777888899965443
No 163
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=72.46 E-value=62 Score=28.95 Aligned_cols=82 Identities=20% Similarity=0.275 Sum_probs=48.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHc--CCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCC-HHHHHHHHHHHHHhCCCeEE
Q 025113 70 TTLIEVTSGNTGVGLAFIAAAR--GYNLIIVMPSTCSMERRIVLRALGAEIILADSALR-FEEILEKGEEILKKTPDGYL 146 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~--g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 146 (257)
.+++.+++|..|.-.|+ ++.+ |=++.++.-..-...-.++.+++|++|..++.+.+ -..-....+++++..++.+|
T Consensus 69 ~tf~isgsGh~g~E~al-~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vf 147 (385)
T KOG2862|consen 69 QTFVISGSGHSGWEAAL-VNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVF 147 (385)
T ss_pred ceEEEecCCcchHHHHH-HhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEE
Confidence 45777777777766444 4443 44444444444466667778888888888874311 11123345556666677888
Q ss_pred eCCCCC
Q 025113 147 LRQFEN 152 (257)
Q Consensus 147 ~~~~~~ 152 (257)
+-+.+.
T Consensus 148 v~hgds 153 (385)
T KOG2862|consen 148 VTHGDS 153 (385)
T ss_pred EEecCc
Confidence 877654
No 164
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=72.17 E-value=39 Score=25.94 Aligned_cols=69 Identities=32% Similarity=0.329 Sum_probs=46.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC----CHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHH
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC----SMERRIVLRALGAEIILADSAL-RFEEILEKGEEIL 138 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~----~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~ 138 (257)
+.+|+..++.-|+++|..-...|-..++++..+. .......++..|.++..+..+- +.++..+..++..
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVI 75 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 4578899999999999998888776666665542 1233455677889888887532 2334444445544
No 165
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=72.00 E-value=52 Score=27.49 Aligned_cols=71 Identities=18% Similarity=0.219 Sum_probs=46.1
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK 140 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~ 140 (257)
...+|++.+|.-|.++|......|.+++++-. .......+.++..+.++..+..+- +.++..+..++..++
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGCDIVGINI-VEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAE 82 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEecC-cchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999889998776532 223445566666777776655432 233444444444443
No 166
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=71.99 E-value=62 Score=27.61 Aligned_cols=56 Identities=29% Similarity=0.364 Sum_probs=40.8
Q ss_pred CCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 025113 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (257)
Q Consensus 63 g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~ 121 (257)
+.+.+|...+|...+|..|.++...|+..|.+++.+.+. +.+.+.++.+|++-+..
T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~~ 193 (320)
T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRS---PERAALLKELGADEVVI 193 (320)
T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHhcCCcEEEe
Confidence 445667676677778999999999999999996555433 45667777889855443
No 167
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=71.47 E-value=24 Score=31.61 Aligned_cols=61 Identities=23% Similarity=0.316 Sum_probs=44.9
Q ss_pred HHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (257)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (257)
+.+..+.||...-+..-.| .|.---.+|+..|.+++++-.. +..|.+.++.+||+.++...
T Consensus 174 Lk~~g~~pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~--~~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 174 LKRSGLGPGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTS--SKKKEEAIKSLGADVFVDST 234 (360)
T ss_pred hHHcCCCCCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCC--chhHHHHHHhcCcceeEEec
Confidence 3334456887755555556 7776677799999999987543 44578889999999998875
No 168
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=70.83 E-value=32 Score=29.82 Aligned_cols=57 Identities=28% Similarity=0.408 Sum_probs=40.8
Q ss_pred HHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (257)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~ 120 (257)
.+.+.+.+|.+.+|. .+|-.|.+++..|+.+|.+++++. .++.+.+.++.+|+....
T Consensus 148 ~~~~~~~~g~~vlV~-g~g~vg~~~~q~a~~~G~~vi~~~---~~~~~~~~~~~~g~~~~~ 204 (319)
T cd08242 148 LEQVPITPGDKVAVL-GDGKLGLLIAQVLALTGPDVVLVG---RHSEKLALARRLGVETVL 204 (319)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEc---CCHHHHHHHHHcCCcEEe
Confidence 355667777676666 478999999999999999954432 235677777778986543
No 169
>PRK08226 short chain dehydrogenase; Provisional
Probab=70.83 E-value=36 Score=28.53 Aligned_cols=72 Identities=22% Similarity=0.129 Sum_probs=43.9
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK 140 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~ 140 (257)
.+.+|+..+|.-|.+++......|.+++++-.........+.+...|.++..+..+- +..+..+..++..++
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 79 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEK 79 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 366888999999999999988899987766544322223344445576765554322 233333444444443
No 170
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=70.76 E-value=34 Score=28.57 Aligned_cols=55 Identities=18% Similarity=0.119 Sum_probs=38.0
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEECC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADS 123 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~Ga~v~~~~~ 123 (257)
.+.+|+..+|..|.++|......|.+++++...... ....+.++..|.++..+..
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~ 66 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAF 66 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEc
Confidence 467888999999999999988899987665443211 2233455666777776654
No 171
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=70.73 E-value=35 Score=29.95 Aligned_cols=52 Identities=23% Similarity=0.308 Sum_probs=37.7
Q ss_pred CCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (257)
Q Consensus 66 ~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~ 120 (257)
.+|...+|. ..|..|.++...|+.+|.+.++++ ..++.+...++.+|++.+.
T Consensus 162 ~~g~~vlV~-~~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~lg~~~~~ 213 (341)
T PRK05396 162 LVGEDVLIT-GAGPIGIMAAAVAKHVGARHVVIT--DVNEYRLELARKMGATRAV 213 (341)
T ss_pred CCCCeEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHhCCcEEe
Confidence 356565665 468999999999999998644444 3556677888889986544
No 172
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=70.72 E-value=42 Score=28.88 Aligned_cols=55 Identities=25% Similarity=0.317 Sum_probs=39.3
Q ss_pred cCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 025113 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (257)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~ 119 (257)
.+.+.+|...+|...+|..|.+++..|+.+|.+.+++.+.. .+.+.++.+|++-+
T Consensus 133 ~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~---~~~~~~~~~g~~~~ 187 (323)
T cd05282 133 YLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRD---EQVEELKALGADEV 187 (323)
T ss_pred hccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCh---HHHHHHHhcCCCEE
Confidence 44566776766667778999999999999999876655432 45566677887433
No 173
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=70.69 E-value=49 Score=26.25 Aligned_cols=75 Identities=17% Similarity=0.285 Sum_probs=53.1
Q ss_pred CCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCC---------CCCHHHHHHHHH
Q 025113 43 PCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS---------TCSMERRIVLRA 113 (257)
Q Consensus 43 ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~---------~~~~~~~~~l~~ 113 (257)
|.--+-++.....+.+|.+.|- ..-||.+|+|.+++-++-+...- +++++|.-. ..+++..+.++.
T Consensus 7 pG~eNT~~tle~a~erA~elgi----k~~vVAS~tG~tA~k~lemveg~-lkvVvVthh~Gf~e~g~~e~~~E~~~~L~e 81 (186)
T COG1751 7 PGKENTDETLEIAVERAKELGI----KHIVVASSTGYTALKALEMVEGD-LKVVVVTHHAGFEEKGTQEMDEEVRKELKE 81 (186)
T ss_pred CcccchHHHHHHHHHHHHhcCc----ceEEEEecccHHHHHHHHhcccC-ceEEEEEeecccccCCceecCHHHHHHHHH
Confidence 3445667888888999988774 23455667799888766655432 888877632 246778889999
Q ss_pred CCCEEEEEC
Q 025113 114 LGAEIILAD 122 (257)
Q Consensus 114 ~Ga~v~~~~ 122 (257)
.|++|..-.
T Consensus 82 rGa~v~~~s 90 (186)
T COG1751 82 RGAKVLTQS 90 (186)
T ss_pred cCceeeeeh
Confidence 999997654
No 174
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=70.53 E-value=38 Score=29.49 Aligned_cols=50 Identities=22% Similarity=0.367 Sum_probs=35.8
Q ss_pred eEEEE-eCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113 70 TTLIE-VTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (257)
Q Consensus 70 ~~vv~-~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~ 122 (257)
..++. ..+|..|.++...|+.+|.+++++.+ ++.+.+.++.+|++-+...
T Consensus 145 ~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i~~ 195 (324)
T cd08291 145 KAVVHTAAASALGRMLVRLCKADGIKVINIVR---RKEQVDLLKKIGAEYVLNS 195 (324)
T ss_pred cEEEEccCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEEEC
Confidence 44454 67788999988889999987555432 4567778888998765544
No 175
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=70.44 E-value=38 Score=28.71 Aligned_cols=72 Identities=19% Similarity=0.210 Sum_probs=45.4
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK 140 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~-~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~ 140 (257)
.+.+|+..+|..|.+++......|.+++++..... .....+.++..|.++..+..+- +.++..+..++..++
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 84 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILED 84 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 36688899999999999998889998777665421 2233445566677776665432 233333344444333
No 176
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=70.41 E-value=39 Score=30.26 Aligned_cols=57 Identities=18% Similarity=0.178 Sum_probs=40.9
Q ss_pred HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (257)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~ 120 (257)
+.+.+++|.+.+|. ..|..|.+++..|+.+|.+-++.+ ..++.+++.++.+|++...
T Consensus 179 ~~~~~~~g~~VlV~-G~G~iG~~a~q~Ak~~G~~~Vi~~--~~~~~~~~~a~~~Ga~~~i 235 (368)
T TIGR02818 179 NTAKVEEGDTVAVF-GLGGIGLSVIQGARMAKASRIIAI--DINPAKFELAKKLGATDCV 235 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHhCCCeEE
Confidence 44567777776666 469999999999999998433433 2356688888889996544
No 177
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=70.35 E-value=21 Score=32.25 Aligned_cols=55 Identities=36% Similarity=0.421 Sum_probs=41.7
Q ss_pred CCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (257)
Q Consensus 63 g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~ 120 (257)
..+.+|...+|...+|..|.+++..|+.+|.+.+++. .++.+.+.++.+|++.+.
T Consensus 189 ~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~---~s~~~~~~~~~~G~~~~i 243 (393)
T cd08246 189 NTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVV---SSEEKAEYCRALGAEGVI 243 (393)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEe---CCHHHHHHHHHcCCCEEE
Confidence 3456676666666679999999999999999976553 356678888889986544
No 178
>PRK12828 short chain dehydrogenase; Provisional
Probab=70.33 E-value=57 Score=26.53 Aligned_cols=71 Identities=18% Similarity=0.067 Sum_probs=45.4
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHh
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADSALRFEEILEKGEEILKK 140 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~ 140 (257)
.+.+|+.++|--|.+++......|.+++++.....+ ......+...+.+++..+-. +.++..+..++..++
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~~ 79 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLV-DPQAARRAVDEVNRQ 79 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecC-CHHHHHHHHHHHHHH
Confidence 467888999999999999888889997777654322 23344556667777776642 334333333443333
No 179
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=69.98 E-value=43 Score=28.92 Aligned_cols=51 Identities=25% Similarity=0.323 Sum_probs=38.4
Q ss_pred CCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (257)
Q Consensus 67 ~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~ 120 (257)
+|...+|...+|..|.+++..|+.+|.+++++.. ++.+.+.++.+|++-+.
T Consensus 146 ~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~---~~~~~~~~~~~g~~~~~ 196 (324)
T cd08288 146 GDGPVLVTGAAGGVGSVAVALLARLGYEVVASTG---RPEEADYLRSLGASEII 196 (324)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHhcCCCEEE
Confidence 4556566667799999999999999998666543 44677888889985443
No 180
>PRK08303 short chain dehydrogenase; Provisional
Probab=69.88 E-value=62 Score=28.28 Aligned_cols=73 Identities=23% Similarity=0.208 Sum_probs=46.6
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-----------CHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHH
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-----------SMERRIVLRALGAEIILADSA-LRFEEILEKGEE 136 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~-----------~~~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~~~~ 136 (257)
...+|+..++--|.++|......|.+++++..... -....+.++..|.+++.+..+ .+.++..+..++
T Consensus 9 k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~ 88 (305)
T PRK08303 9 KVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALVER 88 (305)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 46788888888999999998889998877654321 112334556677776655432 234455555555
Q ss_pred HHHhC
Q 025113 137 ILKKT 141 (257)
Q Consensus 137 ~~~~~ 141 (257)
..+..
T Consensus 89 ~~~~~ 93 (305)
T PRK08303 89 IDREQ 93 (305)
T ss_pred HHHHc
Confidence 55544
No 181
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=69.85 E-value=57 Score=28.07 Aligned_cols=57 Identities=28% Similarity=0.436 Sum_probs=40.5
Q ss_pred HHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 025113 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (257)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~ 119 (257)
.+...++++...+|...+|..|.+++..|+.+|.+++++.+ +..+.+.++.+|++-.
T Consensus 135 ~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 191 (324)
T cd08244 135 LDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAG---GPAKTALVRALGADVA 191 (324)
T ss_pred HHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCCEE
Confidence 34556677777677777899999999999999998655433 2345566677887543
No 182
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=69.77 E-value=48 Score=27.40 Aligned_cols=71 Identities=21% Similarity=0.254 Sum_probs=45.6
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK 140 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~ 140 (257)
.+.+|+..+|.-|.++|......|.+++++.... .....+.++..+.++..+..+- +.++..+..++..+.
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE-PSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEE 77 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch-HHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 4678888899999999999988999877765432 2334555666777766655432 233344444444443
No 183
>PRK06348 aspartate aminotransferase; Provisional
Probab=69.77 E-value=85 Score=28.25 Aligned_cols=83 Identities=13% Similarity=0.197 Sum_probs=45.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC--CCCHHHHHHHHHHHHHhCCCeEEe
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS--ALRFEEILEKGEEILKKTPDGYLL 147 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 147 (257)
..|+..+++.++..++..+- .+-.-.|++|...-..-...++..|++++.++. +.++.-..+..++..++....+++
T Consensus 90 ~~i~it~G~~~al~~~~~~~-~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l 168 (384)
T PRK06348 90 NEIMATVGACHGMYLALQSI-LDPGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALITSKTKAIIL 168 (384)
T ss_pred hhEEEcCChHHHHHHHHHHh-cCCCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCcCccEEEE
Confidence 34777777788776665543 232235666665544556677778999988863 122211122223333333466776
Q ss_pred CCCCCC
Q 025113 148 RQFENP 153 (257)
Q Consensus 148 ~~~~~~ 153 (257)
....||
T Consensus 169 ~~p~NP 174 (384)
T PRK06348 169 NSPNNP 174 (384)
T ss_pred eCCCCC
Confidence 533444
No 184
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=69.71 E-value=58 Score=29.90 Aligned_cols=80 Identities=15% Similarity=0.112 Sum_probs=45.0
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHhCCCeEEeCC
Q 025113 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKKTPDGYLLRQ 149 (257)
Q Consensus 71 ~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 149 (257)
.|+.++++..+..++..+-.. -.=.|+++.-+-..-...++.+|++++.++.+. +++ .+..++..++....+|+.+
T Consensus 143 ~Iiit~G~~~al~~~~~~l~~-pgd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~g~~--~~~l~~~~~~~~k~i~~~p 219 (431)
T PRK15481 143 EIDLTSGAIDAIERLLCAHLL-PGDSVAVEDPCFLSSINMLRYAGFSASPVSVDAEGMQ--PEKLERALAQGARAVILTP 219 (431)
T ss_pred eEEEecCcHHHHHHHHHHhCC-CCCEEEEeCCCcHHHHHHHHHcCCeEEeeccCCCCCC--HHHHHHHHhcCCCEEEECC
Confidence 577777778887766554322 123455555444555777788999999987531 222 1222333333446677763
Q ss_pred -CCCC
Q 025113 150 -FENP 153 (257)
Q Consensus 150 -~~~~ 153 (257)
..||
T Consensus 220 ~p~NP 224 (431)
T PRK15481 220 RAHNP 224 (431)
T ss_pred CCCCC
Confidence 3444
No 185
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=69.67 E-value=38 Score=28.53 Aligned_cols=72 Identities=19% Similarity=0.082 Sum_probs=44.7
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK 140 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~ 140 (257)
...+|+..+|..|.+++......|.+++++-..... ......++..|+++..+..+- +..+..+...+..++
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKE 84 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 467889999999999999988899987766332211 223344556687776665432 233334444444443
No 186
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=69.47 E-value=46 Score=29.24 Aligned_cols=53 Identities=25% Similarity=0.302 Sum_probs=38.1
Q ss_pred CCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113 65 ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (257)
Q Consensus 65 ~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~ 120 (257)
+.+|...+|.+ +|-.|.+++..|+.+|.+.++++ ..++.+.+.++.+|++.+.
T Consensus 159 ~~~g~~vlI~~-~g~vg~~a~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~v 211 (340)
T TIGR00692 159 PISGKSVLVTG-AGPIGLMAIAVAKASGAYPVIVS--DPNEYRLELAKKMGATYVV 211 (340)
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCCcEEE
Confidence 45666666654 68889898889999998855555 3467778888888985433
No 187
>PRK05866 short chain dehydrogenase; Provisional
Probab=69.36 E-value=49 Score=28.64 Aligned_cols=71 Identities=15% Similarity=0.122 Sum_probs=44.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK 140 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~ 140 (257)
+.+|++.+|.-|.++|......|.+++++...... ....+.+...|.++..+..+- +.++..+..++..++
T Consensus 42 ~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 114 (293)
T PRK05866 42 RILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKR 114 (293)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 56888999999999999988889988777654211 222334445566665554322 233444444444444
No 188
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=69.30 E-value=67 Score=28.30 Aligned_cols=58 Identities=26% Similarity=0.220 Sum_probs=40.8
Q ss_pred HHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (257)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~ 120 (257)
.+...+++|.+.+|. .+|..|.+++..|+..|.+.++.+.. ++.+....+.+|++.+.
T Consensus 159 ~~~~~~~~g~~vlI~-g~g~iG~~~~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~~v 216 (351)
T cd08285 159 AELANIKLGDTVAVF-GIGPVGLMAVAGARLRGAGRIIAVGS--RPNRVELAKEYGATDIV 216 (351)
T ss_pred HHccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCceEe
Confidence 345567777665665 57899999999999999875554433 34567777888985443
No 189
>PRK06114 short chain dehydrogenase; Provisional
Probab=68.90 E-value=64 Score=26.91 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=39.1
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHCCCEEEEECC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADS 123 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~--~~~~~~l~~~Ga~v~~~~~ 123 (257)
...+|+.++|--|.++|......|.++++....... ....+.++..|.++..+..
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~ 65 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAA 65 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEc
Confidence 467889999999999999988899988877654321 2334556666777665553
No 190
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=68.86 E-value=42 Score=29.99 Aligned_cols=57 Identities=19% Similarity=0.248 Sum_probs=41.0
Q ss_pred HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (257)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~ 120 (257)
+.+.+.+|.+.+|. .+|..|.+++..|+.+|...++.+.. .+.+++.++.+|++-+.
T Consensus 178 ~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~~~~~ga~~~i 234 (365)
T cd08277 178 NTAKVEPGSTVAVF-GLGAVGLSAIMGAKIAGASRIIGVDI--NEDKFEKAKEFGATDFI 234 (365)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCCcEe
Confidence 45667788776666 56999999999999999853333322 56678888889986443
No 191
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=68.70 E-value=84 Score=27.79 Aligned_cols=55 Identities=25% Similarity=0.380 Sum_probs=38.0
Q ss_pred cCCCCCCceEEEEeCCChHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGY-NLIIVMPSTCSMERRIVLRALGAEIIL 120 (257)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~-~~~i~vp~~~~~~~~~~l~~~Ga~v~~ 120 (257)
.+.+.+|...+|. .+|..|.+++..|+.+|. +++++. .++.+...++.+|++-+.
T Consensus 172 ~~~~~~g~~vlI~-g~g~vG~~~~~lak~~G~~~v~~~~---~~~~~~~~~~~~g~~~vi 227 (361)
T cd08231 172 AGPVGAGDTVVVQ-GAGPLGLYAVAAAKLAGARRVIVID---GSPERLELAREFGADATI 227 (361)
T ss_pred ccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc---CCHHHHHHHHHcCCCeEE
Confidence 3444466666666 469999999999999999 554442 245667777888985433
No 192
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=68.64 E-value=77 Score=27.42 Aligned_cols=54 Identities=28% Similarity=0.377 Sum_probs=36.4
Q ss_pred cCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCE
Q 025113 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (257)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~ 117 (257)
.+.+.++...+|. .+|..|.+++..|+..|.+++ ++....+..+...++.+|++
T Consensus 159 ~~~~~~g~~vlI~-g~g~~g~~~~~la~~~G~~v~-~~~~~~~~~~~~~~~~~g~~ 212 (306)
T cd08258 159 RSGIRPGDTVVVF-GPGPIGLLAAQVAKLQGATVV-VVGTEKDEVRLDVAKELGAD 212 (306)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCEEE-EECCCCCHHHHHHHHHhCCc
Confidence 3456666666665 468899998888999998853 33333345666777777763
No 193
>PRK06194 hypothetical protein; Provisional
Probab=68.57 E-value=67 Score=27.29 Aligned_cols=72 Identities=22% Similarity=0.266 Sum_probs=44.6
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK 140 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~-~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~ 140 (257)
.+.+|+..+|.-|.+++......|.+++++-.... .......+...|.++..+..+- +.++..+..++..++
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 80 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALER 80 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35688999999999999988888998776644321 1223344555577886666432 233444444444443
No 194
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=68.43 E-value=87 Score=27.86 Aligned_cols=146 Identities=16% Similarity=0.197 Sum_probs=71.5
Q ss_pred HHHHHHHHcCCCCCCceEEEEeC-CChHHHHHHHHHHHcCCcEEEEeCCC-C----------CHHH---H--HHH-HHCC
Q 025113 54 SMIKDAEDKGLITPGKTTLIEVT-SGNTGVGLAFIAAARGYNLIIVMPST-C----------SMER---R--IVL-RALG 115 (257)
Q Consensus 54 ~~~~~a~~~g~~~~g~~~vv~~s-sGN~~~alA~~a~~~g~~~~i~vp~~-~----------~~~~---~--~~l-~~~G 115 (257)
..+..+.+++. ..|+... ..+.....--.++..|+|++.+-... . .... . +.+ +.+|
T Consensus 71 ~~i~~li~~~v-----dgIiv~~~d~~al~~~l~~a~~~gIpVV~~d~~~~~~~~~~~V~~~~~~~~G~~~~~~l~~~l~ 145 (336)
T PRK15408 71 QLINNFVNQGY-----NAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTKPECRSYYINQGTPEQLGSMLVEMAAKQVG 145 (336)
T ss_pred HHHHHHHHcCC-----CEEEEecCCHHHHHHHHHHHHHCCCeEEEeCCCCCCccceEEEecCCHHHHHHHHHHHHHHhcC
Confidence 55666666654 3444443 22322334444677788888774321 0 0101 1 111 2233
Q ss_pred ---CEEEEECCCCC---HHHHHHHHHH-HHHhCCCeEEeCC-CCCCcchHhhHhhHHHHHHhhhCCCCCEEEEecCchhH
Q 025113 116 ---AEIILADSALR---FEEILEKGEE-ILKKTPDGYLLRQ-FENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGT 187 (257)
Q Consensus 116 ---a~v~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~pvG~Gg~ 187 (257)
.+|..+.+..+ ..++.+-.++ +.+++|+...+.. +.+... ..++ ..+.++++.- +++|.|+++ + ...
T Consensus 146 ~g~gki~il~g~~~~~~~~~r~~g~~~~l~~~~p~~~vv~~~~~~~d~-~~a~-~~~~~lL~~~-pdi~aI~~~-~-~~~ 220 (336)
T PRK15408 146 KDKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHPGWEIVTTQFGYNDA-TKSL-QTAEGILKAY-PDLDAIIAP-D-ANA 220 (336)
T ss_pred CCCCEEEEEECCCCCccHHHHHHHHHHHHHhhCCCCEEEeecCCCCcH-HHHH-HHHHHHHHHC-CCCcEEEEC-C-Ccc
Confidence 57765543221 1122222222 3345556555542 222211 2222 2445555554 679999987 3 333
Q ss_pred HHHHHHHHHhcCC-CcEEEEEeC
Q 025113 188 VTGAGRFLKENNP-DIKVYGVEP 209 (257)
Q Consensus 188 ~aGi~~~~k~~~~-~~~vigv~~ 209 (257)
+.|+..++++.+. ++.|+|.+.
T Consensus 221 ~~Ga~~Al~~~g~~~v~VvG~D~ 243 (336)
T PRK15408 221 LPAAAQAAENLKRDKVAIVGFST 243 (336)
T ss_pred HHHHHHHHHhCCCCCEEEEEeCC
Confidence 4577888887643 688888764
No 195
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=68.39 E-value=32 Score=30.93 Aligned_cols=62 Identities=29% Similarity=0.335 Sum_probs=42.7
Q ss_pred HHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113 58 DAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (257)
Q Consensus 58 ~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (257)
+++.+..++||.+ |....-|-.|....-+|+.+|.++++|- .++.|++..+.+||+.+....
T Consensus 157 ~alk~~~~~pG~~-V~I~G~GGlGh~avQ~Aka~ga~Via~~---~~~~K~e~a~~lGAd~~i~~~ 218 (339)
T COG1064 157 RALKKANVKPGKW-VAVVGAGGLGHMAVQYAKAMGAEVIAIT---RSEEKLELAKKLGADHVINSS 218 (339)
T ss_pred eehhhcCCCCCCE-EEEECCcHHHHHHHHHHHHcCCeEEEEe---CChHHHHHHHHhCCcEEEEcC
Confidence 4555567788865 5556666666666667888886666653 456778888888888877763
No 196
>PRK08862 short chain dehydrogenase; Provisional
Probab=68.13 E-value=41 Score=27.90 Aligned_cols=73 Identities=16% Similarity=0.084 Sum_probs=45.8
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHHHHhC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADSA-LRFEEILEKGEEILKKT 141 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~~~~~~~~~ 141 (257)
...+|++.++.-|.++|......|.+++++-..... ....+.++..|.+++.+.-+ .+.++..+..++..++.
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQF 80 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHh
Confidence 466888888899999999999999997776443221 22344566678777655422 23444444455554443
No 197
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=68.12 E-value=71 Score=26.73 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=25.0
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 025113 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (257)
Q Consensus 71 ~vv~~ssGN~~~alA~~a~~~g~~~~i~vp 100 (257)
.+|+.++|.-|.++|......|.++++.-.
T Consensus 3 vlItGas~gIG~aia~~l~~~G~~V~~~~r 32 (259)
T PRK08340 3 VLVTASSRGIGFNVARELLKKGARVVISSR 32 (259)
T ss_pred EEEEcCCcHHHHHHHHHHHHcCCEEEEEeC
Confidence 578899999999999998888988766544
No 198
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=67.81 E-value=76 Score=26.97 Aligned_cols=58 Identities=28% Similarity=0.322 Sum_probs=41.2
Q ss_pred HHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (257)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~ 120 (257)
.+...+.+|...+|...+|..|.++...++..|.+++++.+. ..+.+.++.+|++.+.
T Consensus 132 ~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~ 189 (325)
T TIGR02824 132 FQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGS---DEKCAACEALGADIAI 189 (325)
T ss_pred HHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCcEEE
Confidence 345667777777777778999999999999999887655432 3445556777875443
No 199
>PRK07791 short chain dehydrogenase; Provisional
Probab=67.68 E-value=70 Score=27.48 Aligned_cols=73 Identities=12% Similarity=0.151 Sum_probs=46.5
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCC----------CCHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHH
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPST----------CSMERRIVLRALGAEIILADSA-LRFEEILEKGEEI 137 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~----------~~~~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~~~~~ 137 (257)
...+|+..++--|.++|......|.+++++.... ......+.++..|.++..+..+ .+.++..+..++.
T Consensus 7 k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 86 (286)
T PRK07791 7 RVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVDAA 86 (286)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHH
Confidence 4678899999999999999888999877764321 1122244555667777665532 2344455555555
Q ss_pred HHhC
Q 025113 138 LKKT 141 (257)
Q Consensus 138 ~~~~ 141 (257)
.++.
T Consensus 87 ~~~~ 90 (286)
T PRK07791 87 VETF 90 (286)
T ss_pred HHhc
Confidence 5554
No 200
>PRK12939 short chain dehydrogenase; Provisional
Probab=67.59 E-value=47 Score=27.38 Aligned_cols=55 Identities=18% Similarity=0.136 Sum_probs=37.3
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEECC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADS 123 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~-~~~~~~~l~~~Ga~v~~~~~ 123 (257)
...+|+..+|.-|.++|......|.+++++..... .....+.++..+.++..+..
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 63 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAA 63 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 46688889999999999998889998766643211 12233445556777766554
No 201
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=67.46 E-value=77 Score=29.22 Aligned_cols=72 Identities=15% Similarity=0.214 Sum_probs=46.6
Q ss_pred CceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHh
Q 025113 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKK 140 (257)
Q Consensus 68 g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~ 140 (257)
|.+.+|+..+|.-|.++|......|.+++++-.........+..+..+++++.++-. +.++..+......++
T Consensus 210 g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~-~~~~~~~~~~~~~~~ 281 (450)
T PRK08261 210 GKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDIT-APDAPARIAEHLAER 281 (450)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCC-CHHHHHHHHHHHHHh
Confidence 346788899999999999998889998777654333333333345567787777753 344444444444443
No 202
>PRK06128 oxidoreductase; Provisional
Probab=67.33 E-value=82 Score=27.21 Aligned_cols=72 Identities=17% Similarity=0.133 Sum_probs=46.7
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC---CHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC---SMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK 140 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~---~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~ 140 (257)
.+.+|+..+|--|.++|..-...|.++++...... .....+.++..|.++..+..+- +.++..+..++..+.
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 36788999999999999998889998877653321 1234455667788777665432 233444444444443
No 203
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=67.16 E-value=50 Score=27.16 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=38.6
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEECCC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADSA 124 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~Ga~v~~~~~~ 124 (257)
..+|+..+|..|.+++......|.+++++.....+ ......++..|.+++.+..+
T Consensus 9 ~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 64 (239)
T PRK07666 9 NALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATAD 64 (239)
T ss_pred EEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECC
Confidence 56888899999999999888889987777654221 22234456667777766543
No 204
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=67.14 E-value=84 Score=27.41 Aligned_cols=53 Identities=26% Similarity=0.289 Sum_probs=37.5
Q ss_pred CCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEE
Q 025113 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (257)
Q Consensus 63 g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v 118 (257)
..+.+|...+|. +.|..|.++...|+.+|+..++++ ..++.+...++.+|+.+
T Consensus 163 ~~~~~~~~vlI~-g~g~vg~~~~~~a~~~g~~~v~~~--~~~~~~~~~~~~~g~~~ 215 (344)
T cd08284 163 AQVRPGDTVAVI-GCGPVGLCAVLSAQVLGAARVFAV--DPVPERLERAAALGAEP 215 (344)
T ss_pred cCCccCCEEEEE-CCcHHHHHHHHHHHHcCCceEEEE--cCCHHHHHHHHHhCCeE
Confidence 345566666666 578999999999999998433444 33456677778899864
No 205
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=67.06 E-value=39 Score=29.85 Aligned_cols=54 Identities=20% Similarity=0.191 Sum_probs=39.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHH----HHCCCEEEEECC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVL----RALGAEIILADS 123 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~--~~~~~~l----~~~Ga~v~~~~~ 123 (257)
+-+.+.-..|-+.++-.+|+.+|+.+++..|+... +.-++.. +..|+++..+..
T Consensus 155 k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d 214 (310)
T COG0078 155 KLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTED 214 (310)
T ss_pred EEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecC
Confidence 43445556899999999999999999999998643 3333333 445889988873
No 206
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=66.93 E-value=64 Score=26.62 Aligned_cols=56 Identities=21% Similarity=0.334 Sum_probs=40.1
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHCCCEEEEECCC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADSA 124 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~--~~~~~~l~~~Ga~v~~~~~~ 124 (257)
.+.+|+..+|.-|.+++..-...|.++++....+.+ ....+.++..|.++..+..+
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 62 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKAN 62 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 467889999999999999988899988765433222 23345566778888776643
No 207
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=66.73 E-value=63 Score=26.40 Aligned_cols=55 Identities=24% Similarity=0.252 Sum_probs=38.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHCCCEEEEECCC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADSA 124 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~--~~~~~~l~~~Ga~v~~~~~~ 124 (257)
+.+|+.++|..|.+++......|.+++++.....+ ......++..+.++..+..+
T Consensus 7 ~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 63 (248)
T PRK05557 7 VALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGD 63 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcC
Confidence 56888999999999999888889987676654322 22334455567888777643
No 208
>PRK12937 short chain dehydrogenase; Provisional
Probab=66.47 E-value=72 Score=26.18 Aligned_cols=72 Identities=15% Similarity=0.174 Sum_probs=46.6
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK 140 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~--~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~ 140 (257)
...+|+..+|..|.++|..-...|.+++++.....+ ....+.++..+.++..+..+- +.++..+..++..++
T Consensus 6 ~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (245)
T PRK12937 6 KVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETA 80 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 466888999999999999988899988776544321 223445666788887766432 233333444444443
No 209
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=66.22 E-value=80 Score=26.66 Aligned_cols=57 Identities=30% Similarity=0.408 Sum_probs=40.6
Q ss_pred cCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 025113 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (257)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~ 121 (257)
.+.+.+|...+|...+|..|.+++..++.+|.+++++. .++.+.+.++.+|++-+..
T Consensus 131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~---~~~~~~~~~~~~g~~~~~~ 187 (320)
T cd05286 131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTV---SSEEKAELARAAGADHVIN 187 (320)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHCCCCEEEe
Confidence 45566776766666689999999999999998865553 2445666777788754443
No 210
>PRK05370 argininosuccinate synthase; Validated
Probab=66.20 E-value=1.2e+02 Score=28.49 Aligned_cols=130 Identities=15% Similarity=0.155 Sum_probs=71.6
Q ss_pred CceEEEEeCCC-hHHHHHHHHHHHcCCcEEEEeCCC-C----C-HHHHHHHHHCCC-EEEEECCCCCHHHHHHHHHHHHH
Q 025113 68 GKTTLIEVTSG-NTGVGLAFIAAARGYNLIIVMPST-C----S-MERRIVLRALGA-EIILADSALRFEEILEKGEEILK 139 (257)
Q Consensus 68 g~~~vv~~ssG-N~~~alA~~a~~~g~~~~i~vp~~-~----~-~~~~~~l~~~Ga-~v~~~~~~~~~~~~~~~~~~~~~ 139 (257)
|.+.++..|.| .+...+-|.-.. |+.++.|.-+- - + ....+....+|| +++.++-...|.+. .. ...+
T Consensus 11 ~~KVvLAYSGGLDTSv~l~wL~e~-~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDlr~eF~e~--~i-~aI~ 86 (447)
T PRK05370 11 GQRVGIAFSGGLDTSAALLWMRQK-GAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRAQLVAE--GI-AAIQ 86 (447)
T ss_pred CCEEEEEecCCchHHHHHHHHHhc-CCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEeccHHHHHHH--HH-HHHH
Confidence 34544555665 566666666555 99998888431 1 1 344556677899 68888853333221 12 2112
Q ss_pred hCCCeEEe----CCCCCC---cchHhhHhhHHHHHHhhhCCCCCEEEEe-cCchhHHHHHHHHHHhcCCCcEEEEE
Q 025113 140 KTPDGYLL----RQFENP---ANPKIHYETTGPEIWQDSGGKVDAFISG-IGTGGTVTGAGRFLKENNPDIKVYGV 207 (257)
Q Consensus 140 ~~~~~~~~----~~~~~~---~~~~~g~~t~~~Ei~~ql~~~~d~iv~p-vG~Gg~~aGi~~~~k~~~~~~~vigv 207 (257)
. +..|. +.|... ..|. ......|++++. ..|+|... +|-|--..=.-.+++.+.|+.+||+=
T Consensus 87 a--nA~Y~~~~e~~Y~l~t~LaRpl--ia~~lv~~A~~~--ga~aIAHG~TGKGNDQvRFE~~~~aL~P~l~ViaP 156 (447)
T PRK05370 87 C--GAFHISTGGVTYFNTTPLGRAV--TGTMLVAAMKED--GVNIWGDGSTYKGNDIERFYRYGLLTNPELKIYKP 156 (447)
T ss_pred c--CCccccccCccccCCCcchHHH--HHHHHHHHHHHh--CCcEEEEcCCCCCCchHHHHHHHHHhCCCCeEecc
Confidence 1 22221 111110 1111 122334555555 36777744 56677777778888899998888764
No 211
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=66.16 E-value=46 Score=29.87 Aligned_cols=53 Identities=13% Similarity=0.110 Sum_probs=34.6
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (257)
Q Consensus 71 ~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (257)
.|+.++++..+..++..+....-+-.|++|.-+-..-...++.+|++++.++.
T Consensus 93 ~I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 145 (374)
T PRK02610 93 NISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGR 145 (374)
T ss_pred HEEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecC
Confidence 46666666777765555443332224666665555566777889999999874
No 212
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=66.11 E-value=20 Score=29.85 Aligned_cols=46 Identities=26% Similarity=0.295 Sum_probs=28.2
Q ss_pred HHHHHHhhhCCCCCEEE-EecCchhHHHHHHHHHHhcCCCcEEEEEeCC
Q 025113 163 TGPEIWQDSGGKVDAFI-SGIGTGGTVTGAGRFLKENNPDIKVYGVEPS 210 (257)
Q Consensus 163 ~~~Ei~~ql~~~~d~iv-~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~ 210 (257)
...||+-++ +||.|| +.+-.||++.=.+.-++..+++.+|+||+-.
T Consensus 23 ~~qeli~~~--kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDId 69 (206)
T PF04989_consen 23 AYQELIWEL--KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDID 69 (206)
T ss_dssp HHHHHHHHH----SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-
T ss_pred HHHHHHHHh--CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCC
Confidence 346888787 688887 5666677765555556777788999999984
No 213
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=66.02 E-value=34 Score=28.66 Aligned_cols=56 Identities=27% Similarity=0.349 Sum_probs=38.4
Q ss_pred HHHHcCCCCCCceEEEEe-CCC---hHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCC
Q 025113 58 DAEDKGLITPGKTTLIEV-TSG---NTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGA 116 (257)
Q Consensus 58 ~a~~~g~~~~g~~~vv~~-ssG---N~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~Ga 116 (257)
.|++.|- ..+.+|++ |.| .+..|||.+|++.|=+.+.++|+..+ ..-.+.|..+|.
T Consensus 34 SAlAAG~---nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~ 94 (218)
T PF07279_consen 34 SALAAGW---NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL 94 (218)
T ss_pred HHHhccc---cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc
Confidence 3444453 23455655 554 36899999999999999999998654 455666666665
No 214
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.91 E-value=50 Score=27.22 Aligned_cols=55 Identities=22% Similarity=0.143 Sum_probs=37.9
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEECC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADS 123 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~-~~~~~~~l~~~Ga~v~~~~~ 123 (257)
.+.+|+..+|.-|.+++......|.+++++..... .....+.++..|+++..+..
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 61 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAA 61 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 46688888999999999998888988766554321 12234445666887766554
No 215
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=65.88 E-value=46 Score=31.24 Aligned_cols=53 Identities=13% Similarity=-0.047 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 025113 49 DRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (257)
Q Consensus 49 ~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~ 101 (257)
-+|+.+.+..+.+.........+|+....||-|..+|.....+|-+++.+.+.
T Consensus 217 G~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~ 269 (454)
T PTZ00079 217 GYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDS 269 (454)
T ss_pred HHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcC
Confidence 35777777777654333333467888999999999999988889888866544
No 216
>PRK06172 short chain dehydrogenase; Provisional
Probab=65.87 E-value=52 Score=27.36 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=39.1
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEECC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADS 123 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~Ga~v~~~~~ 123 (257)
.+.+|+..+|.-|.++|......|.+++++...... ....+.++..|.++..+..
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 63 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVAC 63 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 466888999999999999988899987776544222 2234556667877766554
No 217
>PRK05876 short chain dehydrogenase; Provisional
Probab=65.81 E-value=52 Score=28.13 Aligned_cols=73 Identities=16% Similarity=0.125 Sum_probs=44.9
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHhC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKKT 141 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~-~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~~ 141 (257)
...+|+..+|--|.++|......|.+++++..... .....+.++..|.++..+..+- +.++..+..++..++.
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 81 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLL 81 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 46788999999999999998889998766543321 1222344556687776555432 3344444444444443
No 218
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=65.80 E-value=85 Score=26.77 Aligned_cols=55 Identities=31% Similarity=0.400 Sum_probs=38.0
Q ss_pred HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCc-EEEEeCCCCCHHHHHHHHHCCCEEE
Q 025113 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYN-LIIVMPSTCSMERRIVLRALGAEII 119 (257)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~-~~i~vp~~~~~~~~~~l~~~Ga~v~ 119 (257)
+...+++|...+|.+ .|-.|.+++..|+.+|.+ ++++ .. .+.+...++.+|++-+
T Consensus 123 ~~~~~~~~~~vlI~g-~g~vg~~~~~la~~~g~~~v~~~-~~--~~~~~~~~~~~g~~~~ 178 (312)
T cd08269 123 RRGWIRAGKTVAVIG-AGFIGLLFLQLAAAAGARRVIAI-DR--RPARLALARELGATEV 178 (312)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEE-CC--CHHHHHHHHHhCCceE
Confidence 355667776766664 688999999999999998 5443 22 3456667778887433
No 219
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=65.78 E-value=1e+02 Score=27.64 Aligned_cols=51 Identities=27% Similarity=0.361 Sum_probs=42.0
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH-CCCEEEEECC
Q 025113 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRA-LGAEIILADS 123 (257)
Q Consensus 71 ~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~-~Ga~v~~~~~ 123 (257)
+++....|.-|+..+..++.+|...+|++ +.++.+++..+. .|+++...+.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~--d~~~~Rl~~A~~~~g~~~~~~~~ 222 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV--DRSPERLELAKEAGGADVVVNPS 222 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHHHhCCCeEeecCc
Confidence 68889999999999999999999988888 456778888877 7777776664
No 220
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.41 E-value=52 Score=26.96 Aligned_cols=33 Identities=24% Similarity=0.247 Sum_probs=28.5
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~ 101 (257)
.+.+|+.++|..|.+++......|.+++++...
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~ 38 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRN 38 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 466889999999999999999999998887764
No 221
>PRK08643 acetoin reductase; Validated
Probab=65.38 E-value=59 Score=27.07 Aligned_cols=54 Identities=17% Similarity=0.170 Sum_probs=37.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEECC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADS 123 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~Ga~v~~~~~ 123 (257)
..+|+.++|.-|.+++......|.+++++...... ......++..|.++..+..
T Consensus 4 ~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 58 (256)
T PRK08643 4 VALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKA 58 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 56888999999999999988899887776543222 1223345556777766654
No 222
>PRK10083 putative oxidoreductase; Provisional
Probab=65.14 E-value=84 Score=27.41 Aligned_cols=60 Identities=18% Similarity=0.215 Sum_probs=42.4
Q ss_pred HHHcCCCCCCceEEEEeCCChHHHHHHHHHHH-cCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 025113 59 AEDKGLITPGKTTLIEVTSGNTGVGLAFIAAA-RGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (257)
Q Consensus 59 a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~-~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~ 121 (257)
+.+...+.+|.+.+|.+ .|-.|.+++..|+. +|.+.++.+.. ++.+.+.++.+|++-+..
T Consensus 152 ~~~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~i~ 212 (339)
T PRK10083 152 VTGRTGPTEQDVALIYG-AGPVGLTIVQVLKGVYNVKAVIVADR--IDERLALAKESGADWVIN 212 (339)
T ss_pred HHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHhCCcEEec
Confidence 34456677776655555 78888888888886 59887666543 567788888899965543
No 223
>PRK06181 short chain dehydrogenase; Provisional
Probab=64.88 E-value=50 Score=27.61 Aligned_cols=71 Identities=18% Similarity=0.175 Sum_probs=44.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK 140 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~ 140 (257)
+.+|+..+|..|.+++......|.+++++...... ....+.++..|.++..+..+. +.+...+..++..++
T Consensus 3 ~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 75 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVAR 75 (263)
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 46788999999999999988899988877654211 223344555677776555332 333333444444443
No 224
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=64.80 E-value=55 Score=26.65 Aligned_cols=59 Identities=31% Similarity=0.400 Sum_probs=37.0
Q ss_pred EeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhC
Q 025113 74 EVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKT 141 (257)
Q Consensus 74 ~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~ 141 (257)
-.|||-.|.++|-++...|-.++++..+..-+. -.|.+++.+.. .++-.+.+.+...+.
T Consensus 25 N~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~------p~~~~~i~v~s---a~em~~~~~~~~~~~ 83 (185)
T PF04127_consen 25 NRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP------PPGVKVIRVES---AEEMLEAVKELLPSA 83 (185)
T ss_dssp ES--SHHHHHHHHHHHHTT-EEEEEE-TTS----------TTEEEEE-SS---HHHHHHHHHHHGGGG
T ss_pred CCCcCHHHHHHHHHHHHCCCEEEEEecCccccc------cccceEEEecc---hhhhhhhhccccCcc
Confidence 469999999999999999999999997742111 24667777773 455555555555444
No 225
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=64.65 E-value=53 Score=28.46 Aligned_cols=71 Identities=31% Similarity=0.320 Sum_probs=47.4
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHH-HHCCCEEEEECCCC-CHHHHHHHHHHHHH
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVL-RALGAEIILADSAL-RFEEILEKGEEILK 139 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l-~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~ 139 (257)
.+.+||..|+.-|.++|..-+..|.+++++...... ....+++ +.+|.+|...+-+- +.++..+...++..
T Consensus 7 ~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~ 80 (265)
T COG0300 7 KTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKE 80 (265)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHh
Confidence 467899999999999999999999999999987432 2222233 44677776666432 23344444444444
No 226
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=64.60 E-value=49 Score=28.70 Aligned_cols=54 Identities=22% Similarity=0.215 Sum_probs=39.1
Q ss_pred HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEE
Q 025113 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (257)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v 118 (257)
+...+.++...+|. ..|..|.+++..++..|++++++.+.. .+.+.++.+|++-
T Consensus 161 ~~~~~~~~~~vlV~-g~g~vg~~~~~la~~~g~~v~~~~~~~---~~~~~~~~~g~~~ 214 (329)
T cd08298 161 KLAGLKPGQRLGLY-GFGASAHLALQIARYQGAEVFAFTRSG---EHQELARELGADW 214 (329)
T ss_pred HhhCCCCCCEEEEE-CCcHHHHHHHHHHHHCCCeEEEEcCCh---HHHHHHHHhCCcE
Confidence 45667777665664 578899999999999998876665443 5666777788753
No 227
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=64.44 E-value=97 Score=26.99 Aligned_cols=53 Identities=36% Similarity=0.513 Sum_probs=38.6
Q ss_pred HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCE
Q 025113 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (257)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~ 117 (257)
+...+.+|...++. ..|..|.+++..|+..|++++++.+ +..+...++.+|++
T Consensus 153 ~~~~l~~g~~vLI~-g~g~vG~~a~~lA~~~g~~v~~~~~---s~~~~~~~~~~g~~ 205 (337)
T cd08261 153 RRAGVTAGDTVLVV-GAGPIGLGVIQVAKARGARVIVVDI---DDERLEFARELGAD 205 (337)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEECC---CHHHHHHHHHhCCC
Confidence 45567777766666 4678899999999999998766543 36666777778864
No 228
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=64.14 E-value=57 Score=27.82 Aligned_cols=52 Identities=33% Similarity=0.458 Sum_probs=38.9
Q ss_pred cCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCE
Q 025113 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (257)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~ 117 (257)
.+.+.+|...+|.+.+|..|.+++..|+..|.+++.+.+. .+.+.++.+|++
T Consensus 138 ~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~----~~~~~~~~~g~~ 189 (319)
T cd08267 138 AGKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST----RNAELVRSLGAD 189 (319)
T ss_pred hcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH----HHHHHHHHcCCC
Confidence 3446667676666777999999999999999987666542 566677788874
No 229
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=64.11 E-value=62 Score=28.84 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=52.1
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEe--CCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCC
Q 025113 72 LIEVTSGNTGVGLAFIAAARGYNLIIVM--PSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTP 142 (257)
Q Consensus 72 vv~~ssGN~~~alA~~a~~~g~~~~i~v--p~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~ 142 (257)
|++..=|-.--++-.-=..++=.-++++ |...++.-..+++.+|..|.+..|...++.+.+.++.+.+++|
T Consensus 55 Vlttpwg~ynes~~~eI~~lnpd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp 127 (337)
T COG2247 55 VLTTPWGIYNESVLDEIIELNPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYP 127 (337)
T ss_pred eEecCcccccHHHHHHHHhhCCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhch
Confidence 4544435555555555556666666666 4467888899999999999999998788888888888876664
No 230
>PRK05867 short chain dehydrogenase; Provisional
Probab=64.03 E-value=57 Score=27.16 Aligned_cols=72 Identities=13% Similarity=0.131 Sum_probs=44.1
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK 140 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~-~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~ 140 (257)
...+|+.++|.-|.++|..-...|.+++++..... .....+.++..|.++..+..+- +.++..+..++..++
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 46788999999999999998889998766644321 1222344555677766554322 334444444444443
No 231
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=63.81 E-value=64 Score=28.09 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=39.7
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHCCCEEEEECCC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIVLRALGAEIILADSA 124 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~--~~~~~~~l~~~Ga~v~~~~~~ 124 (257)
...+|+..+|.-|.++|..-...|.++++.-.... .....+.++..|.+++.+..+
T Consensus 13 k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~D 70 (306)
T PRK07792 13 KVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGD 70 (306)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCC
Confidence 46788999999999999998888988766543222 123345567778888777643
No 232
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=63.73 E-value=98 Score=26.75 Aligned_cols=55 Identities=27% Similarity=0.364 Sum_probs=39.4
Q ss_pred cCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 025113 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (257)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~ 119 (257)
.+.+.+|...+|...+|-.|.+++..|+..|.+++++.. +..+...++.+|++-+
T Consensus 134 ~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~v 188 (329)
T cd08250 134 VGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCS---SDEKAEFLKSLGCDRP 188 (329)
T ss_pred hcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeC---cHHHHHHHHHcCCceE
Confidence 355677777777777889999999999999988655543 3345566677887443
No 233
>PLN02527 aspartate carbamoyltransferase
Probab=63.72 E-value=80 Score=27.94 Aligned_cols=45 Identities=22% Similarity=0.254 Sum_probs=33.8
Q ss_pred ChHHHHHHHHHHHc-CCcEEEEeCCCC--CHHHHHHHHHCCCEEEEEC
Q 025113 78 GNTGVGLAFIAAAR-GYNLIIVMPSTC--SMERRIVLRALGAEIILAD 122 (257)
Q Consensus 78 GN~~~alA~~a~~~-g~~~~i~vp~~~--~~~~~~~l~~~Ga~v~~~~ 122 (257)
+|.+.+++.+++.+ |+.++++.|+.- ++...+.++..|.++...+
T Consensus 163 ~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 210 (306)
T PLN02527 163 GRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESS 210 (306)
T ss_pred ChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEc
Confidence 46899999987776 999999999863 4555556666777776665
No 234
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=63.70 E-value=34 Score=30.83 Aligned_cols=55 Identities=16% Similarity=0.167 Sum_probs=39.8
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~ 124 (257)
..++..++|..|..++..+...+-.-.|++|..+-......++..|++++.++.+
T Consensus 47 ~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~d 101 (375)
T PRK11706 47 AKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (375)
T ss_pred CeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 4577778888887666544333334578888877777788888999999999853
No 235
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=63.57 E-value=49 Score=24.14 Aligned_cols=92 Identities=18% Similarity=0.146 Sum_probs=52.8
Q ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC--CCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhh-
Q 025113 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS--ALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIH- 159 (257)
Q Consensus 83 alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g- 159 (257)
.+|.+.+..|.++.++=.......-.+.++....+++.+.. ..++....+.++...+..|+...+ ..|
T Consensus 19 ~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv---------~GG~ 89 (121)
T PF02310_consen 19 YLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIV---------VGGP 89 (121)
T ss_dssp HHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEE---------EEES
T ss_pred HHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEE---------EECC
Confidence 45556677799888664433335556778888899887764 234555556666654444444433 223
Q ss_pred HhhHHHHH-HhhhCCCCCEEEEecCc
Q 025113 160 YETTGPEI-WQDSGGKVDAFISGIGT 184 (257)
Q Consensus 160 ~~t~~~Ei-~~ql~~~~d~iv~pvG~ 184 (257)
..|..+|. ++.. ..+|+++..=|-
T Consensus 90 ~~t~~~~~~l~~~-~~~D~vv~GegE 114 (121)
T PF02310_consen 90 HATADPEEILREY-PGIDYVVRGEGE 114 (121)
T ss_dssp SSGHHHHHHHHHH-HTSEEEEEETTS
T ss_pred chhcChHHHhccC-cCcceecCCChH
Confidence 23444544 4332 257888876654
No 236
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=63.52 E-value=92 Score=26.40 Aligned_cols=55 Identities=25% Similarity=0.320 Sum_probs=39.4
Q ss_pred CCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (257)
Q Consensus 63 g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~ 120 (257)
+.+.+|...+|...+|..|.+++..++..|.++++..+. ..+.+.+..+|++-+.
T Consensus 140 ~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~ 194 (325)
T cd08253 140 AGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASS---AEGAELVRQAGADAVF 194 (325)
T ss_pred hCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCCEEE
Confidence 556677676777778999999999999999886665443 3456666677875443
No 237
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=63.36 E-value=58 Score=27.09 Aligned_cols=55 Identities=16% Similarity=0.148 Sum_probs=37.9
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEECC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADS 123 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~-~~~~~~~l~~~Ga~v~~~~~ 123 (257)
.+.+|+..+|.-|.+++......|.+++++..... .......++..|.++..+..
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 67 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAF 67 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 46788899999999999988888998777765421 12233445566766655543
No 238
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=63.25 E-value=58 Score=26.86 Aligned_cols=71 Identities=13% Similarity=0.062 Sum_probs=44.1
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHH
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADSAL-RFEEILEKGEEILK 139 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~ 139 (257)
...+|+..+|.-|.+++......|.+++++...... ......++..+.++..+..+- +.++..+..++..+
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 76 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQ 76 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 466889999999999999988889887776544221 222334555676676665432 23333444444433
No 239
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=63.23 E-value=1e+02 Score=26.91 Aligned_cols=52 Identities=27% Similarity=0.385 Sum_probs=36.8
Q ss_pred cCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCE
Q 025113 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (257)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~ 117 (257)
...+.++.+.+|.+ .|..|.++...|+.+|++++++.+ +..+.+.++.+|++
T Consensus 160 ~~~~~~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~ 211 (345)
T cd08260 160 QARVKPGEWVAVHG-CGGVGLSAVMIASALGARVIAVDI---DDDKLELARELGAV 211 (345)
T ss_pred ccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHhCCC
Confidence 44566666666666 789999999999999988666533 34456666778873
No 240
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=63.23 E-value=99 Score=26.67 Aligned_cols=56 Identities=25% Similarity=0.323 Sum_probs=38.6
Q ss_pred cCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH-CCCEEEE
Q 025113 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRA-LGAEIIL 120 (257)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~-~Ga~v~~ 120 (257)
.+.+.+|...+|...+|-.|.+++..++..|.+++++.+ +..+.+.++. +|++-+.
T Consensus 140 ~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~~g~~~~~ 196 (329)
T cd05288 140 IGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAG---SDEKCRWLVEELGFDAAI 196 (329)
T ss_pred ccCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhhcCCceEE
Confidence 345666666666666789999999999999997655533 3446666666 8874333
No 241
>PRK07035 short chain dehydrogenase; Provisional
Probab=63.04 E-value=66 Score=26.68 Aligned_cols=73 Identities=18% Similarity=0.118 Sum_probs=44.9
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHHHHhC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSA-LRFEEILEKGEEILKKT 141 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~-~~~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~~~~~~~~~ 141 (257)
.+.+|+..+|.-|.+++......|.+++++-.... .....+.+...|.++..+..+ .+.++..+..++..+..
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERH 83 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 36688999999999999999889998777654321 122344455567666555432 23344444444444433
No 242
>PRK08278 short chain dehydrogenase; Provisional
Probab=63.03 E-value=88 Score=26.54 Aligned_cols=55 Identities=24% Similarity=0.272 Sum_probs=39.1
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC--------HHHHHHHHHCCCEEEEECC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--------MERRIVLRALGAEIILADS 123 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~--------~~~~~~l~~~Ga~v~~~~~ 123 (257)
.+.+|+..+|--|.++|......|.+++++...... ....+.++..|.+++.+..
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 69 (273)
T PRK08278 7 KTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVG 69 (273)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEe
Confidence 366888899999999999998999998887754321 1123445667877766654
No 243
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=62.98 E-value=69 Score=26.49 Aligned_cols=55 Identities=18% Similarity=0.228 Sum_probs=38.9
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEECC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADS 123 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~Ga~v~~~~~ 123 (257)
.+.+|+..+|..|.+++..-...|.+++++...... ......++..+.++..+..
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 60 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAM 60 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 366888999999999999888889988877654322 2233455566777765554
No 244
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=62.94 E-value=91 Score=28.13 Aligned_cols=53 Identities=17% Similarity=0.105 Sum_probs=33.2
Q ss_pred EEEEeCCChHHHHHHHHHHH-cCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113 71 TLIEVTSGNTGVGLAFIAAA-RGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (257)
Q Consensus 71 ~vv~~ssGN~~~alA~~a~~-~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (257)
.|+.++++..+..++..+-. -|=...|++|.-.-..-....+..|++++.++-
T Consensus 92 ~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~ 145 (393)
T TIGR03538 92 HVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNC 145 (393)
T ss_pred eEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhcCCeEEEeec
Confidence 46666777777766554322 243345777764433334557789999998874
No 245
>PLN02827 Alcohol dehydrogenase-like
Probab=62.89 E-value=72 Score=28.77 Aligned_cols=57 Identities=21% Similarity=0.249 Sum_probs=41.0
Q ss_pred HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (257)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~ 120 (257)
+.+.+.+|.+.+|.+ .|--|.++...|+.+|.+.++.+.. ++.+.+.++.+|++-+.
T Consensus 187 ~~~~~~~g~~VlV~G-~G~vG~~~iqlak~~G~~~vi~~~~--~~~~~~~a~~lGa~~~i 243 (378)
T PLN02827 187 NVADVSKGSSVVIFG-LGTVGLSVAQGAKLRGASQIIGVDI--NPEKAEKAKTFGVTDFI 243 (378)
T ss_pred hhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCcEEE
Confidence 345677776756654 6889999999999999875554432 45678888899996543
No 246
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=62.68 E-value=1e+02 Score=27.61 Aligned_cols=56 Identities=23% Similarity=0.300 Sum_probs=39.7
Q ss_pred HHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEE
Q 025113 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (257)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v 118 (257)
...+.+++|...+|. ..|..|.+++..++.+|.+-++++. ..+.+++.++.+|++-
T Consensus 183 ~~~~~~~~g~~VlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~--~~~~~~~~a~~lGa~~ 238 (373)
T cd08299 183 VNTAKVTPGSTCAVF-GLGGVGLSAIMGCKAAGASRIIAVD--INKDKFAKAKELGATE 238 (373)
T ss_pred HhccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCce
Confidence 345567777665565 6799999999999999984334442 2456778888899853
No 247
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=62.61 E-value=53 Score=30.59 Aligned_cols=45 Identities=24% Similarity=0.189 Sum_probs=35.1
Q ss_pred ChHHHHHHHHHHHc-CCcEEEEeCCCC--CHHHHHHHHHCCCEEEEEC
Q 025113 78 GNTGVGLAFIAAAR-GYNLIIVMPSTC--SMERRIVLRALGAEIILAD 122 (257)
Q Consensus 78 GN~~~alA~~a~~~-g~~~~i~vp~~~--~~~~~~~l~~~Ga~v~~~~ 122 (257)
+|.+.+++.+++.+ |++++++.|+.- +...++.++..|+.|..++
T Consensus 253 ~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~ 300 (429)
T PRK11891 253 GRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTD 300 (429)
T ss_pred ChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEc
Confidence 69999999996655 999999999864 4555666677788877765
No 248
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=62.31 E-value=63 Score=26.64 Aligned_cols=71 Identities=10% Similarity=0.191 Sum_probs=45.0
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHH
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIVLRALGAEIILADSAL-RFEEILEKGEEILK 139 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~--~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~ 139 (257)
...+|+..+|.-|.++|......|.+++++..... .....+.++..|.++.....+- +.++..+..++..+
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 77 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKA 77 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999889988776554322 1223455566788877655332 33333344444433
No 249
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=62.29 E-value=82 Score=27.83 Aligned_cols=61 Identities=20% Similarity=0.209 Sum_probs=40.8
Q ss_pred HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHH-HHHCCCEEEEEC
Q 025113 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIV-LRALGAEIILAD 122 (257)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~--~~~~~~~-l~~~Ga~v~~~~ 122 (257)
+.|.++. .+..+.+-.+|.+++++..++.+|++++++.|+.- +...++. .+..|.++...+
T Consensus 146 ~~g~l~g-l~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~ 209 (304)
T PRK00779 146 HRGSLKG-LKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTH 209 (304)
T ss_pred HhCCcCC-cEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEc
Confidence 3565543 33333344579999999999999999999999863 2333333 466788877654
No 250
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=62.19 E-value=1e+02 Score=26.86 Aligned_cols=58 Identities=19% Similarity=0.189 Sum_probs=40.4
Q ss_pred HcCCCCCCceEEEEeCCChHHHHHHHHHHH-cCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAA-RGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (257)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~-~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~ 122 (257)
+...+++|...+|.+ .|-.|.+++..|+. .|.+++++. .++.+.+.++.+|++.+...
T Consensus 156 ~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~---~~~~~~~~~~~~g~~~v~~~ 214 (338)
T PRK09422 156 KVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVIAVD---INDDKLALAKEVGADLTINS 214 (338)
T ss_pred HhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe---CChHHHHHHHHcCCcEEecc
Confidence 445677777766666 68899998888887 498765553 34457777788898655443
No 251
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=62.07 E-value=46 Score=27.80 Aligned_cols=53 Identities=23% Similarity=0.070 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCC
Q 025113 50 RIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPST 102 (257)
Q Consensus 50 R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~ 102 (257)
||..+.+..+.+.-.......+|+....||-|..+|......|.+.+.+.+.+
T Consensus 4 ~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~ 56 (217)
T cd05211 4 YGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPD 56 (217)
T ss_pred hHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 56666666665443223334678999999999999999999998888887653
No 252
>PRK07890 short chain dehydrogenase; Provisional
Probab=62.05 E-value=63 Score=26.81 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=37.6
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEECC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADS 123 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~Ga~v~~~~~ 123 (257)
.+.+|+.++|.-|.++|......|.+++++-..... ......++..|.++..+..
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 61 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPT 61 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEec
Confidence 467889999999999999999999987776543211 2223444555766655553
No 253
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=61.97 E-value=1.1e+02 Score=27.22 Aligned_cols=57 Identities=21% Similarity=0.270 Sum_probs=40.3
Q ss_pred cCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 025113 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (257)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~ 121 (257)
...+.+|.+.+|. ..|..|.++...|+.+|.+.++.+.. ++.+...++.+|++.+..
T Consensus 181 ~~~~~~g~~vlI~-g~g~vG~~~~~la~~~G~~~v~~~~~--~~~k~~~~~~~g~~~~i~ 237 (365)
T cd08278 181 VLKPRPGSSIAVF-GAGAVGLAAVMAAKIAGCTTIIAVDI--VDSRLELAKELGATHVIN 237 (365)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCcEEec
Confidence 4556677666666 56899999999999999975444433 456777778899865443
No 254
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=61.90 E-value=67 Score=26.41 Aligned_cols=55 Identities=18% Similarity=0.195 Sum_probs=39.0
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEECC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADS 123 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~-~~~~~~~l~~~Ga~v~~~~~ 123 (257)
.+.+|+.++|..|.+++......|.+++++..... .....+.++..+.++..+..
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 62 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQV 62 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 35688889999999999998888988777765422 13334456667777766654
No 255
>PRK07814 short chain dehydrogenase; Provisional
Probab=61.88 E-value=63 Score=27.18 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=36.3
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEEC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~Ga~v~~~~ 122 (257)
.+.+|++++|--|.+++......|.+++++...... ......++..|.++..+.
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~ 65 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVA 65 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 467889999999999999888899988776654211 222334444566665544
No 256
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=61.60 E-value=60 Score=27.19 Aligned_cols=32 Identities=16% Similarity=0.151 Sum_probs=25.3
Q ss_pred ceEEEEeCC--ChHHHHHHHHHHHcCCcEEEEeC
Q 025113 69 KTTLIEVTS--GNTGVGLAFIAAARGYNLIIVMP 100 (257)
Q Consensus 69 ~~~vv~~ss--GN~~~alA~~a~~~g~~~~i~vp 100 (257)
...+|+..+ +.-|+++|......|.++++.-.
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecC
Confidence 356777766 68999999999899999777644
No 257
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=61.55 E-value=70 Score=26.58 Aligned_cols=72 Identities=25% Similarity=0.111 Sum_probs=43.6
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK 140 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~ 140 (257)
...+|+..+|.-|.++|......|.+++++...... ......++..+.++..+..+- +.++..+...+..++
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKD 83 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHh
Confidence 367889999999999999988889877765433111 222344555576776655432 233333444444443
No 258
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=61.54 E-value=74 Score=27.64 Aligned_cols=50 Identities=24% Similarity=0.264 Sum_probs=36.4
Q ss_pred CceEEEEeCCChHHHHHHHHHHHc-CCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113 68 GKTTLIEVTSGNTGVGLAFIAAAR-GYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (257)
Q Consensus 68 g~~~vv~~ssGN~~~alA~~a~~~-g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~ 120 (257)
|...+|...+|..|.++...|+.+ |.+++.+... +.+.+.++.+|++-+.
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~---~~~~~~l~~~g~~~~~ 199 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASR---PESQEWVLELGAHHVI 199 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCc---HHHHHHHHHcCCCEEE
Confidence 666667777889999988889987 9887665433 3566777778985444
No 259
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=61.50 E-value=71 Score=28.88 Aligned_cols=52 Identities=23% Similarity=0.327 Sum_probs=34.8
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (257)
Q Consensus 72 vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (257)
++..++|..|..++..+-..+-.-.|++|...-......+...|++++.++.
T Consensus 51 ~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~v~vd~ 102 (379)
T PRK11658 51 AIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIVLLGATPVMVDV 102 (379)
T ss_pred EEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHHHcCCEEEEEec
Confidence 5556777777666654432233346777876666666777889999999874
No 260
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=61.46 E-value=92 Score=25.68 Aligned_cols=51 Identities=33% Similarity=0.495 Sum_probs=32.3
Q ss_pred CCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCE
Q 025113 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (257)
Q Consensus 63 g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~ 117 (257)
..+.+|...++...++ .|++++..++..|.+++++.+. +.+.+.++.+|++
T Consensus 130 ~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 180 (271)
T cd05188 130 GVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRS---DEKLELAKELGAD 180 (271)
T ss_pred cCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHhCCc
Confidence 3345565655666555 8888888888888776555443 3445555666653
No 261
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=61.42 E-value=1.1e+02 Score=27.24 Aligned_cols=54 Identities=24% Similarity=0.341 Sum_probs=39.6
Q ss_pred HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCE
Q 025113 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (257)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~ 117 (257)
+...+.+|...+|. ..|..|.+++..|+.+|.+.++.+.. +..+.+.++.+|++
T Consensus 177 ~~~~~~~g~~vlI~-g~g~vG~~a~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 230 (365)
T cd05279 177 NTAKVTPGSTCAVF-GLGGVGLSVIMGCKAAGASRIIAVDI--NKDKFEKAKQLGAT 230 (365)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCC
Confidence 44566777776665 57999999999999999875554432 56677777889984
No 262
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=61.21 E-value=58 Score=28.19 Aligned_cols=50 Identities=32% Similarity=0.445 Sum_probs=36.2
Q ss_pred HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCE
Q 025113 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (257)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~ 117 (257)
....+++|...+|...+|..|++++..|+..|.+++++. +.+.++.+|++
T Consensus 156 ~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~-------~~~~~~~~g~~ 205 (325)
T cd08264 156 KTAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVS-------RKDWLKEFGAD 205 (325)
T ss_pred HhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEe-------HHHHHHHhCCC
Confidence 345677777767777779999999999999999866653 12444567763
No 263
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=60.77 E-value=59 Score=25.94 Aligned_cols=72 Identities=21% Similarity=0.189 Sum_probs=44.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCC-----CCHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHhC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPST-----CSMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKKT 141 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~-----~~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~~ 141 (257)
+-+|+...|..|..+|..-...+-.-++++... .....++.++..|++|..+..+- +.++..+...++.++.
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~ 79 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRF 79 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTS
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhcc
Confidence 347888899999999988666665444444332 23457888999999999887542 3444444444444443
No 264
>PRK07806 short chain dehydrogenase; Provisional
Probab=60.18 E-value=93 Score=25.64 Aligned_cols=71 Identities=18% Similarity=0.170 Sum_probs=44.0
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHH
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADSAL-RFEEILEKGEEILK 139 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~--~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~ 139 (257)
.+.+|+..+|.-|.+++......|.+++++...... ......++..|.++..+..+- +.++..+..++..+
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTARE 80 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 356888899999999999988889998877654321 112334555677766655432 33344444444433
No 265
>PLN02342 ornithine carbamoyltransferase
Probab=60.17 E-value=59 Score=29.38 Aligned_cols=61 Identities=16% Similarity=0.219 Sum_probs=40.8
Q ss_pred HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHCCC-EEEEEC
Q 025113 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIVLRALGA-EIILAD 122 (257)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~--~~~~~~~l~~~Ga-~v~~~~ 122 (257)
+.|.++ |.+..+.+-..|.+.++..+++.+|+.++++.|+.- +...++.++..|. ++....
T Consensus 188 ~~G~l~-glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~ 251 (348)
T PLN02342 188 HIGRLE-GTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITN 251 (348)
T ss_pred HhCCcC-CCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEc
Confidence 346554 333333344468999999999999999999999864 3445555666674 665554
No 266
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=60.10 E-value=53 Score=28.29 Aligned_cols=53 Identities=13% Similarity=-0.043 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 025113 49 DRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (257)
Q Consensus 49 ~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~ 101 (257)
-||+.+.+..+.+.........+|+....||-|..+|......|.+++.+...
T Consensus 18 g~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~ 70 (254)
T cd05313 18 GYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDS 70 (254)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 45777777777665444443467899999999999999999999888877663
No 267
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=60.00 E-value=84 Score=26.83 Aligned_cols=113 Identities=10% Similarity=0.022 Sum_probs=55.7
Q ss_pred HHHHHHHHc--CCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeE---EeCCCCCCcchH
Q 025113 83 GLAFIAAAR--GYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGY---LLRQFENPANPK 157 (257)
Q Consensus 83 alA~~a~~~--g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 157 (257)
.+.++++.+ |.+..-+-..+.-...++.....|-+|..+++. -....+.++.+.+++ +.. +-++|.++..
T Consensus 71 gvv~~~~~~~~~~~~~Rv~G~dl~~~ll~~~~~~~~~v~llG~~--~~v~~~a~~~l~~~y-~l~i~g~~~Gyf~~~e-- 145 (243)
T PRK03692 71 SVVRSIRKKYPQAQVSRVAGADLWEALMARAGKEGTPVFLVGGK--PEVLAQTEAKLRTQW-NVNIVGSQDGYFTPEQ-- 145 (243)
T ss_pred HHHHHHHHhcCCCCCCeeChHHHHHHHHHHHHhcCCeEEEECCC--HHHHHHHHHHHHHHh-CCEEEEEeCCCCCHHH--
Confidence 466777665 433111111111233455556778999999964 233334445555555 432 2234433221
Q ss_pred hhHhhHHHHHHhhhC-CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEE
Q 025113 158 IHYETTGPEIWQDSG-GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGV 207 (257)
Q Consensus 158 ~g~~t~~~Ei~~ql~-~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv 207 (257)
..++.+++. ..+|.++|+.|+-=- ==...-.+...+..-++||
T Consensus 146 ------~~~i~~~I~~s~~dil~VglG~PkQ-E~~~~~~~~~~~~~v~~gv 189 (243)
T PRK03692 146 ------RQALFERIHASGAKIVTVAMGSPKQ-EIFMRDCRLVYPDALYMGV 189 (243)
T ss_pred ------HHHHHHHHHhcCCCEEEEECCCcHH-HHHHHHHHHhCCCCEEEEe
Confidence 123444442 359999999998431 1112233444444445665
No 268
>PRK06949 short chain dehydrogenase; Provisional
Probab=59.89 E-value=66 Score=26.72 Aligned_cols=71 Identities=17% Similarity=0.193 Sum_probs=42.0
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHH
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADSAL-RFEEILEKGEEILK 139 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~ 139 (257)
.+.+|+..+|.-|.+++......|.+++++...... ......++..+.++..+..+. +.++..+..+++.+
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAET 82 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 466888999999999999998899987776554221 112233444455554444322 23344444444433
No 269
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=59.76 E-value=97 Score=26.89 Aligned_cols=69 Identities=16% Similarity=0.144 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHcCCCCCCceEEEEeCC-ChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCC-CEEEEEC
Q 025113 49 DRIAYSMIKDAEDKGLITPGKTTLIEVTS-GNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALG-AEIILAD 122 (257)
Q Consensus 49 ~R~a~~~~~~a~~~g~~~~g~~~vv~~ss-GN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~G-a~v~~~~ 122 (257)
.+|...+++++.+.|. ..++..-- =.+...+-.+|+.+|+..+.+++++++..+++.+.... +-|+.+.
T Consensus 108 ~~Gie~F~~~~~~~Gv-----dGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs 178 (265)
T COG0159 108 NYGIEKFLRRAKEAGV-----DGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVS 178 (265)
T ss_pred HhhHHHHHHHHHHcCC-----CEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEe
Confidence 3566667778877775 44554422 34555677778888888888888888888888777666 5666655
No 270
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=59.76 E-value=81 Score=25.98 Aligned_cols=56 Identities=14% Similarity=0.167 Sum_probs=38.8
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHCCCEEEEECCC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADSA 124 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~--~~~~~~l~~~Ga~v~~~~~~ 124 (257)
.+.+|+..+|--|.++|......|.++++....... +.....++..|.++..+..+
T Consensus 7 ~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D 64 (247)
T PRK12935 7 KVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQAD 64 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECC
Confidence 467889999999999999888889887765433211 22234556678888776643
No 271
>PRK08017 oxidoreductase; Provisional
Probab=59.73 E-value=1e+02 Score=25.55 Aligned_cols=51 Identities=25% Similarity=0.315 Sum_probs=38.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (257)
+.+|++.+|.-|.+++......|.+++++... ..+.+.++..|++.+.++-
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~D~ 54 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRK---PDDVARMNSLGFTGILLDL 54 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHhHHHHhCCCeEEEeec
Confidence 46788889999999999988889987665443 3445556667887777764
No 272
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=59.67 E-value=78 Score=26.40 Aligned_cols=56 Identities=21% Similarity=0.248 Sum_probs=37.5
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEECCC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADSA 124 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~Ga~v~~~~~~ 124 (257)
.+.+|+..+|--|.++|......|.+++++...... ....+.++..+.++..+..+
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D 69 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAAD 69 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 367888899999999998888889987665443211 12233455667777666543
No 273
>PRK07550 hypothetical protein; Provisional
Probab=59.58 E-value=1.3e+02 Score=26.93 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=34.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (257)
..|+..+++..+..++..+- .+-.-.|++|.-.-..-...++..|++++.++.
T Consensus 91 ~~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 143 (386)
T PRK07550 91 EQVHITSGCNQAFWAAMVTL-AGAGDEVILPLPWYFNHKMWLDMLGIRPVYLPC 143 (386)
T ss_pred ceEEEecCcHHHHHHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCCEEEEEec
Confidence 34666666677776555443 344455777764434445567889999999885
No 274
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=59.57 E-value=1.1e+02 Score=25.80 Aligned_cols=55 Identities=22% Similarity=0.342 Sum_probs=40.5
Q ss_pred HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEE
Q 025113 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (257)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v 118 (257)
+.+.+.+|...++...+|..|.++...++..|++++.+.+. ..+.+.++.+|++-
T Consensus 114 ~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 168 (303)
T cd08251 114 ARAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASS---DDKLEYLKQLGVPH 168 (303)
T ss_pred HhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCC---HHHHHHHHHcCCCE
Confidence 45677787776666778899999999999999986665433 34666667788743
No 275
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=59.43 E-value=36 Score=28.25 Aligned_cols=94 Identities=20% Similarity=0.245 Sum_probs=50.2
Q ss_pred CCCcchHhhHhhHHHHH----HhhhC------CCCCEEEEecC-chhHHHH----HHHHHHhcCCCcEEEEEeCCCCccc
Q 025113 151 ENPANPKIHYETTGPEI----WQDSG------GKVDAFISGIG-TGGTVTG----AGRFLKENNPDIKVYGVEPSESAVL 215 (257)
Q Consensus 151 ~~~~~~~~g~~t~~~Ei----~~ql~------~~~d~iv~pvG-~Gg~~aG----i~~~~k~~~~~~~vigv~~~~~~~~ 215 (257)
+.-.+|..|+.+.+.++ ++++. +.+|.+++..| +|||=+| ++..+++.+|+..++.+-......
T Consensus 90 g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~~~~~ilP~~~- 168 (216)
T PF00091_consen 90 GSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPIISFSILPFSS- 168 (216)
T ss_dssp TSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE-CGG-
T ss_pred cccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhccccccceeecccccccc-
Confidence 33345567877654433 22221 35777666544 2344444 555667777776666653333211
Q ss_pred cCCCccc------ceeccccCCeEEEeChHHHHHHHH
Q 025113 216 NGGQRGL------FIFISYLFRSFVLVDDGAVVHLHN 246 (257)
Q Consensus 216 ~~~~~~~------~~i~~~~~~~~v~v~d~e~~~a~~ 246 (257)
. +...+ ..-+....|.++.++-+.+.+...
T Consensus 169 e-~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~ 204 (216)
T PF00091_consen 169 E-GVVEPYNALLSLSELQEYADSVILFDNDALYKICK 204 (216)
T ss_dssp G-SHHHHHHHHHHHHHHHHTSSEEEEEEHHHHHHHHH
T ss_pred c-cccccceehhHHHHHHHhCCEEEEEcHHHHHHHHh
Confidence 1 11011 123456788899999888877553
No 276
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=59.42 E-value=72 Score=27.79 Aligned_cols=60 Identities=23% Similarity=0.281 Sum_probs=41.5
Q ss_pred CCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEEC
Q 025113 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILAD 122 (257)
Q Consensus 63 g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~-~~~~~~~l~~~Ga~v~~~~ 122 (257)
+.+.+|...+|...+|..|.+++..|+.+|.++++...... ...+.+.++.+|++-+...
T Consensus 142 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 202 (341)
T cd08290 142 VKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVLTE 202 (341)
T ss_pred cccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEEeC
Confidence 44566766556566799999999999999998777665322 1245666677888655443
No 277
>PRK07677 short chain dehydrogenase; Provisional
Probab=59.26 E-value=77 Score=26.34 Aligned_cols=71 Identities=18% Similarity=0.227 Sum_probs=42.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK 140 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~ 140 (257)
+.+|++.+|.-|.+++......|.+++++...... ......++..+.+++.+..+- +.++..+...+..++
T Consensus 3 ~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 75 (252)
T PRK07677 3 VVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEK 75 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 56888999999999999988899977666443221 222333444566666554322 233344444444433
No 278
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=59.13 E-value=68 Score=28.03 Aligned_cols=49 Identities=24% Similarity=0.327 Sum_probs=36.2
Q ss_pred CceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (257)
Q Consensus 68 g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~ 120 (257)
|.+.+|...+|..|.+++..|+.+|++++++... .+.+.++.+|++-+.
T Consensus 163 g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~----~~~~~~~~~g~~~~~ 211 (350)
T cd08248 163 GKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST----DAIPLVKSLGADDVI 211 (350)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc----chHHHHHHhCCceEE
Confidence 6666676778999999999999999986665532 256677778875433
No 279
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=59.00 E-value=72 Score=28.03 Aligned_cols=51 Identities=27% Similarity=0.365 Sum_probs=37.9
Q ss_pred CCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (257)
Q Consensus 66 ~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~ 120 (257)
.++.+.+|...+|..|.+++..|+.+|.+++.+. . ..+.+.++.+|++-+.
T Consensus 153 ~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~-~---~~~~~~~~~~g~~~v~ 203 (339)
T cd08249 153 SKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA-S---PKNFDLVKSLGADAVF 203 (339)
T ss_pred CCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE-C---cccHHHHHhcCCCEEE
Confidence 5666766777789999999999999999876654 2 2567777889984433
No 280
>PLN02702 L-idonate 5-dehydrogenase
Probab=58.97 E-value=1e+02 Score=27.28 Aligned_cols=58 Identities=28% Similarity=0.353 Sum_probs=42.2
Q ss_pred HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 025113 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (257)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~ 121 (257)
+...+.+|...+|. ..|..|.++...++.+|.+.++.+.. +..+.+.++.+|+.....
T Consensus 175 ~~~~~~~g~~vlI~-g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~~~~ 232 (364)
T PLN02702 175 RRANIGPETNVLVM-GAGPIGLVTMLAARAFGAPRIVIVDV--DDERLSVAKQLGADEIVL 232 (364)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHhCCCEEEe
Confidence 44556677665665 57899999999999999986665544 467777888899876543
No 281
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=58.95 E-value=65 Score=29.53 Aligned_cols=90 Identities=8% Similarity=0.020 Sum_probs=40.8
Q ss_pred cCCcEEEEeCCCCCHHHHHHHHHCCC-EEEEECCCCCHHH--HHHHHHHHHHhCCCe-EE-eCC-CCCCcchHhhHhhHH
Q 025113 91 RGYNLIIVMPSTCSMERRIVLRALGA-EIILADSALRFEE--ILEKGEEILKKTPDG-YL-LRQ-FENPANPKIHYETTG 164 (257)
Q Consensus 91 ~g~~~~i~vp~~~~~~~~~~l~~~Ga-~v~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~-~~~-~~~~~~~~~g~~t~~ 164 (257)
+..+..|+.-.+.-...-+.++.+|. ++.++.+ ..+.. ..+...+..++. +. +. .+. -.||.. ....-+
T Consensus 24 f~~P~~i~fG~g~~~~l~~~~~~~g~~~~lvv~~-~~~~~~g~~~~v~~~L~~~-gi~~~~~~~v~~~P~~---~~v~~~ 98 (395)
T PRK15454 24 FSVPPVTLCGPGAVSSCGQQAQTRGLKHLFVMAD-SFLHQAGMTAGLTRSLAVK-GIAMTLWPCPVGEPCI---TDVCAA 98 (395)
T ss_pred eecCCeEEECcCHHHHHHHHHHhcCCCEEEEEcC-cchhhCccHHHHHHHHHHc-CCeEEEECCCCCCcCH---HHHHHH
Confidence 34455555555444434455667774 4444443 22322 123344433443 32 21 111 123322 222234
Q ss_pred HHHHhhhCCCCCEEEEecCchhHH
Q 025113 165 PEIWQDSGGKVDAFISGIGTGGTV 188 (257)
Q Consensus 165 ~Ei~~ql~~~~d~iv~pvG~Gg~~ 188 (257)
.+++++. ++|. |+.+|+|+.+
T Consensus 99 ~~~~r~~--~~D~-IiavGGGS~i 119 (395)
T PRK15454 99 VAQLRES--GCDG-VIAFGGGSVL 119 (395)
T ss_pred HHHHHhc--CcCE-EEEeCChHHH
Confidence 4555553 4665 6788888765
No 282
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=58.89 E-value=74 Score=28.08 Aligned_cols=61 Identities=15% Similarity=0.214 Sum_probs=39.6
Q ss_pred HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHH----HHCCCEEEEEC
Q 025113 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIVL----RALGAEIILAD 122 (257)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~--~~~~~~~l----~~~Ga~v~~~~ 122 (257)
..|.++ |.+..+.+-.+|.+++++.+++++|+.++++.|+.. ++...+.+ +..|+++....
T Consensus 142 ~~g~l~-g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 208 (304)
T TIGR00658 142 HFGKLK-GVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTH 208 (304)
T ss_pred HhCCCC-CcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 345543 223223344478999999999999999999999853 33333333 45788877665
No 283
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=58.76 E-value=77 Score=27.79 Aligned_cols=52 Identities=27% Similarity=0.363 Sum_probs=37.0
Q ss_pred CCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 025113 65 ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (257)
Q Consensus 65 ~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~ 119 (257)
..+|...+|.+ .|..|.+++..|+.+|.+.+++. ..+..+....+.+|++-+
T Consensus 161 ~~~g~~vlV~g-~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~ 212 (341)
T cd05281 161 DVSGKSVLITG-CGPIGLMAIAVAKAAGASLVIAS--DPNPYRLELAKKMGADVV 212 (341)
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCccee
Confidence 35666666654 68999999999999998544444 345677777788898543
No 284
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=58.69 E-value=96 Score=25.24 Aligned_cols=54 Identities=26% Similarity=0.222 Sum_probs=38.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEECC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADS 123 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~Ga~v~~~~~ 123 (257)
+.+|+..+|..|..++......|.+++++...... ......++..|.++..+..
T Consensus 7 ~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 61 (246)
T PRK05653 7 TALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVF 61 (246)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEc
Confidence 56888899999999999988889997666554322 2224455667877777554
No 285
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=58.58 E-value=65 Score=33.23 Aligned_cols=32 Identities=25% Similarity=0.434 Sum_probs=28.6
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp 100 (257)
.+.|+.-.+|-.|++.|+..++.|.+++||=.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~ 337 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEA 337 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEee
Confidence 35688999999999999999999999999854
No 286
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=58.49 E-value=1e+02 Score=26.51 Aligned_cols=53 Identities=30% Similarity=0.422 Sum_probs=39.9
Q ss_pred CCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEE
Q 025113 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (257)
Q Consensus 63 g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v 118 (257)
..+.++...+|...+|..|.+++..++..|.+++++.. ++.+.+.++.+|++-
T Consensus 158 ~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~~~~~ 210 (332)
T cd08259 158 AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTR---SPEKLKILKELGADY 210 (332)
T ss_pred hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHcCCcE
Confidence 56677777777788899999999999999998776653 234556667777743
No 287
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=58.47 E-value=1.3e+02 Score=28.10 Aligned_cols=79 Identities=19% Similarity=0.191 Sum_probs=48.3
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHH----HHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEE
Q 025113 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRI----VLRALGAEIILADSALRFEEILEKGEEILKKTPDGYL 146 (257)
Q Consensus 71 ~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~----~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (257)
..+..+||-.|..++..+- ++-.-.|++|...-..... .+..+|+++..++...+.++ .++..+++....|
T Consensus 78 ~av~~~SG~aAi~~al~al-l~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~----l~~~I~~~Tk~I~ 152 (432)
T PRK06702 78 GAVATASGQAAIMLAVLNI-CSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADE----IVALANDKTKLVY 152 (432)
T ss_pred cEEEECCHHHHHHHHHHHh-cCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCHHH----HHHhCCcCCeEEE
Confidence 3577888888888877654 4434467777654332222 36889999999985322222 2223333446677
Q ss_pred eCCCCCCc
Q 025113 147 LRQFENPA 154 (257)
Q Consensus 147 ~~~~~~~~ 154 (257)
+....||.
T Consensus 153 ~e~pgnP~ 160 (432)
T PRK06702 153 AESLGNPA 160 (432)
T ss_pred EEcCCCcc
Confidence 77667776
No 288
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=58.40 E-value=73 Score=29.23 Aligned_cols=31 Identities=23% Similarity=0.345 Sum_probs=24.2
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 025113 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (257)
Q Consensus 71 ~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~ 101 (257)
+|+..+.|.+|.-.+-.++++|.+++++-.+
T Consensus 82 kVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~ 112 (383)
T COG0075 82 KVLVVVNGKFGERFAEIAERYGAEVVVLEVE 112 (383)
T ss_pred eEEEEeCChHHHHHHHHHHHhCCceEEEeCC
Confidence 4677777888888888888888888887765
No 289
>PRK09134 short chain dehydrogenase; Provisional
Probab=58.25 E-value=1.1e+02 Score=25.52 Aligned_cols=55 Identities=18% Similarity=0.304 Sum_probs=38.2
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHCCCEEEEECC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADS 123 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~--~~~~~~l~~~Ga~v~~~~~ 123 (257)
.+.+|+..+|.-|.+++......|.+++++...+.+ ......++..|.++..+..
T Consensus 10 k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (258)
T PRK09134 10 RAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQA 66 (258)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 367889999999999999999999988776543321 1223344556777766654
No 290
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=58.10 E-value=1.1e+02 Score=25.53 Aligned_cols=73 Identities=15% Similarity=0.125 Sum_probs=46.3
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHhC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADSAL-RFEEILEKGEEILKKT 141 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~--~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~~ 141 (257)
...+|+.++|.-|.++|......|.+++++.....+ ....+.++..|.++..+..+- +.++..+..++..++.
T Consensus 8 k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~ 83 (261)
T PRK08936 8 KVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEF 83 (261)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 467889999999999999988999988776654332 223445566687776554322 3333344444444443
No 291
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=58.03 E-value=78 Score=27.29 Aligned_cols=53 Identities=25% Similarity=0.396 Sum_probs=38.6
Q ss_pred CCCCc-eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113 65 ITPGK-TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (257)
Q Consensus 65 ~~~g~-~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~ 120 (257)
+.+|. +.+|...+|..|.+++..|+.+|.+.++.... ..+.+.++.+|++-+.
T Consensus 142 ~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~---~~~~~~~~~~g~~~~~ 195 (323)
T TIGR02823 142 LTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGK---AEEEDYLKELGASEVI 195 (323)
T ss_pred CCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHhcCCcEEE
Confidence 56676 66666677999999999999999986655433 3455777888985433
No 292
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=58.02 E-value=86 Score=28.06 Aligned_cols=55 Identities=25% Similarity=0.336 Sum_probs=39.8
Q ss_pred HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEE
Q 025113 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (257)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v 118 (257)
+...+.+|...+| ...|..|.+++..|+.+|...++++. .+..+.+.++.+|+..
T Consensus 170 ~~~~~~~g~~vlI-~g~g~vg~~~~~~a~~~G~~~vi~~~--~~~~~~~~~~~~g~~~ 224 (375)
T cd08282 170 ELAGVQPGDTVAV-FGAGPVGLMAAYSAILRGASRVYVVD--HVPERLDLAESIGAIP 224 (375)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHcCCeE
Confidence 4455667766666 56689999999999999975444443 3567888888899854
No 293
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=57.90 E-value=69 Score=29.76 Aligned_cols=30 Identities=17% Similarity=0.114 Sum_probs=25.0
Q ss_pred EeCCChHHHHHHHHHHHcCCcEEEEeCCCC
Q 025113 74 EVTSGNTGVGLAFIAAARGYNLIIVMPSTC 103 (257)
Q Consensus 74 ~~ssGN~~~alA~~a~~~g~~~~i~vp~~~ 103 (257)
++.-|.+..+|+.+-+..|..+.|++|...
T Consensus 16 ~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~ 45 (473)
T TIGR02095 16 TGGLADVVGALPKALAALGHDVRVLLPAYG 45 (473)
T ss_pred cCcHHHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 445578888899998899999999999754
No 294
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=57.88 E-value=1.5e+02 Score=26.85 Aligned_cols=82 Identities=10% Similarity=0.030 Sum_probs=45.4
Q ss_pred CCCCCCChhhHHHHHHHHHHHHcCC--CCCCceEEEEeCCChHHHHHHHHHHH-cCCcEEEEeCCCCCHHHHHHHHHCCC
Q 025113 40 TMEPCSSVKDRIAYSMIKDAEDKGL--ITPGKTTLIEVTSGNTGVGLAFIAAA-RGYNLIIVMPSTCSMERRIVLRALGA 116 (257)
Q Consensus 40 ~~~ptGS~K~R~a~~~~~~a~~~g~--~~~g~~~vv~~ssGN~~~alA~~a~~-~g~~~~i~vp~~~~~~~~~~l~~~Ga 116 (257)
+..+.|....|-+..-.. ...+. +.++...++..+++..|..++..+-. ..-.-.|++|.-.-+.-...++.+|+
T Consensus 65 Y~~~~G~~~lR~aia~~~--~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g~ 142 (396)
T PRK09257 65 YLPIEGLAAYRQAVQELL--FGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGL 142 (396)
T ss_pred cCCCCCCHHHHHHHHHHh--cCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcCC
Confidence 344467767775443322 22221 23432123666667787777653222 12223566666554555777788999
Q ss_pred EEEEECC
Q 025113 117 EIILADS 123 (257)
Q Consensus 117 ~v~~~~~ 123 (257)
+++.++-
T Consensus 143 ~~v~v~~ 149 (396)
T PRK09257 143 EVKTYPY 149 (396)
T ss_pred cEEEEec
Confidence 9998873
No 295
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=57.81 E-value=48 Score=26.20 Aligned_cols=50 Identities=30% Similarity=0.370 Sum_probs=39.8
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~ 122 (257)
..|+....||.|...+.++..+|.+++++ + ..+.+++..+..++..+.++
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~--d-~~~~~~~~~~~~~~~~i~~~ 70 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVP--D-ERPERLRQLESLGAYFIEVD 70 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEE--E-SSHHHHHHHHHTTTEESEET
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEec--c-CCHHHHHhhhcccCceEEEc
Confidence 45788889999999999999999886664 3 35677888889999988885
No 296
>PRK05650 short chain dehydrogenase; Provisional
Probab=57.73 E-value=1.1e+02 Score=25.69 Aligned_cols=70 Identities=16% Similarity=0.222 Sum_probs=44.3
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 025113 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK 140 (257)
Q Consensus 71 ~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~ 140 (257)
.+|++.+|.-|.+++......|.+++++...... ......++..|.++..+..+- +.++..+..++..++
T Consensus 3 vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~ 74 (270)
T PRK05650 3 VMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEK 74 (270)
T ss_pred EEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 4788999999999999988899998877654322 223445666677776665432 233333444444333
No 297
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=57.59 E-value=90 Score=27.24 Aligned_cols=56 Identities=27% Similarity=0.258 Sum_probs=37.8
Q ss_pred HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 025113 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (257)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~ 119 (257)
....+.+|...++. ..|-.|.++...|+.+|...++.+ ..+..+...++.+|++-+
T Consensus 161 ~~~~~~~~~~VlI~-g~g~vg~~~iqlak~~g~~~v~~~--~~~~~~~~~~~~~g~~~v 216 (347)
T cd05278 161 ELAGIKPGSTVAVI-GAGPVGLCAVAGARLLGAARIIAV--DSNPERLDLAKEAGATDI 216 (347)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--eCCHHHHHHHHHhCCcEE
Confidence 34556777676664 458889898888999997444444 334566777788886543
No 298
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=57.51 E-value=86 Score=28.44 Aligned_cols=89 Identities=17% Similarity=0.212 Sum_probs=39.7
Q ss_pred cEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCH--HHHHHHHHHHHHhCC-CeEEeCCC-CCCcchHhhHhhHHHHHHh
Q 025113 94 NLIIVMPSTCSMERRIVLRALGAEIILADSALRF--EEILEKGEEILKKTP-DGYLLRQF-ENPANPKIHYETTGPEIWQ 169 (257)
Q Consensus 94 ~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~g~~t~~~Ei~~ 169 (257)
+..++.-.+.-...-+.++.+|-++.++.+...+ ....+...+..++.+ .....+.. .||.. -...-+.++++
T Consensus 4 p~~i~fG~g~l~~l~~~~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~---~~v~~~~~~~~ 80 (380)
T cd08185 4 PTKIVFGAGKLNELGEEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTT---TTVMEGAALAR 80 (380)
T ss_pred CCeEEECcCHHHHHHHHHHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCH---HHHHHHHHHHH
Confidence 4445555544444444556677777666643221 223344444444431 12212221 23322 11222234444
Q ss_pred hhCCCCCEEEEecCchhHH
Q 025113 170 DSGGKVDAFISGIGTGGTV 188 (257)
Q Consensus 170 ql~~~~d~iv~pvG~Gg~~ 188 (257)
+. ++|. |+.+|+|+.+
T Consensus 81 ~~--~~D~-IiavGGGS~i 96 (380)
T cd08185 81 EE--GCDF-VVGLGGGSSM 96 (380)
T ss_pred Hc--CCCE-EEEeCCccHH
Confidence 43 4665 6778887654
No 299
>PRK05826 pyruvate kinase; Provisional
Probab=57.50 E-value=1.7e+02 Score=27.58 Aligned_cols=124 Identities=13% Similarity=0.130 Sum_probs=72.7
Q ss_pred HHHHHHHcCCcEEEE-----------eCCCCCHHHHHHHHHCCCEEEEECCC---CCH-HHHHHHHHHHHHhCCCeEE--
Q 025113 84 LAFIAAARGYNLIIV-----------MPSTCSMERRIVLRALGAEIILADSA---LRF-EEILEKGEEILKKTPDGYL-- 146 (257)
Q Consensus 84 lA~~a~~~g~~~~i~-----------vp~~~~~~~~~~l~~~Ga~v~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~-- 146 (257)
+...|+..|.++++- .|..+...-+...-..|++-+...++ +.| .++++...+.+++....++
T Consensus 264 Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~ 343 (465)
T PRK05826 264 IIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVEAMARICKGAEKEFSIN 343 (465)
T ss_pred HHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCcCHHHHHHHHHHHHHHHHhccchh
Confidence 445588889988873 34445555566667789998777653 223 3555544444433211111
Q ss_pred --eCCCCCC-cchHhhHhhHHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 025113 147 --LRQFENP-ANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSES 212 (257)
Q Consensus 147 --~~~~~~~-~~~~~g~~t~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~ 212 (257)
....... ..........+.++.++++ +.+.||+.+-+|.++-.+ ..+.|...|+++.+...
T Consensus 344 ~~~~~~~~~~~~~~~~ia~aa~~~a~~l~-~a~~Ivv~T~sG~ta~~i----sk~RP~~pI~~~t~~~~ 407 (465)
T PRK05826 344 LSKHRLDRQFDRIDEAIAMSAMYAANHLK-GVKAIVALTESGRTARLI----SRFRPGAPIFAVTRDEK 407 (465)
T ss_pred hhhhhccccccchHHHHHHHHHHHHHhcC-CCCEEEEECCCcHHHHHH----HhhCCCCCEEEEcCCHH
Confidence 0010011 0112234455567777773 267899999999876554 44678899999987764
No 300
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=57.42 E-value=82 Score=27.48 Aligned_cols=55 Identities=25% Similarity=0.375 Sum_probs=40.8
Q ss_pred HHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCE
Q 025113 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (257)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~ 117 (257)
.+...++||.+.+|-+..|--|..+.-.++..|..++... ...+|.+..+.+|++
T Consensus 139 ~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~a---sTaeK~~~akenG~~ 193 (336)
T KOG1197|consen 139 FEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATA---STAEKHEIAKENGAE 193 (336)
T ss_pred HHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEe---ccHHHHHHHHhcCCc
Confidence 4556788998888888889999888888888776555433 345677777777776
No 301
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=57.34 E-value=94 Score=25.68 Aligned_cols=71 Identities=13% Similarity=0.179 Sum_probs=43.8
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK 140 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~ 140 (257)
+.+|+..+|.-|.+++......|.+++++-..... ....+.++..|.++..+..+- +.++..+...+..++
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~ 74 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEK 74 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 35788899999999999988899887666543211 223445666787776665432 233333334444443
No 302
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=57.29 E-value=82 Score=28.32 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=35.2
Q ss_pred ChHHHHHHHH-HHHcCCcEEEEeCCCC--CHHHHHHHHHCCCEEEEEC
Q 025113 78 GNTGVGLAFI-AAARGYNLIIVMPSTC--SMERRIVLRALGAEIILAD 122 (257)
Q Consensus 78 GN~~~alA~~-a~~~g~~~~i~vp~~~--~~~~~~~l~~~Ga~v~~~~ 122 (257)
+|.+.+++.. ++.+|+.++++.|+.- +...++.++..|+++..+.
T Consensus 171 ~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 218 (338)
T PRK08192 171 GRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITD 218 (338)
T ss_pred CchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 6889998876 6677999999999863 5555666777788887766
No 303
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=57.20 E-value=91 Score=25.96 Aligned_cols=72 Identities=15% Similarity=0.172 Sum_probs=43.7
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK 140 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~ 140 (257)
.+.+|+..+|.-|.+++......|.+++++...... ......++..|.++..+..+- +.++..+..+...++
T Consensus 12 k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 85 (255)
T PRK06113 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSK 85 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 467888999999999999888889887776543221 222344555677666554322 233333444444333
No 304
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=56.84 E-value=81 Score=29.25 Aligned_cols=53 Identities=17% Similarity=0.257 Sum_probs=39.9
Q ss_pred CCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 025113 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (257)
Q Consensus 63 g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~ 119 (257)
+...+| .+|+....|.-|+.+|..++.+|.+++++ +.++.+....+.+|+++.
T Consensus 197 ~~~l~G-ktVvViG~G~IG~~va~~ak~~Ga~ViV~---d~d~~R~~~A~~~G~~~~ 249 (413)
T cd00401 197 DVMIAG-KVAVVAGYGDVGKGCAQSLRGQGARVIVT---EVDPICALQAAMEGYEVM 249 (413)
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHCCCEEEEE---ECChhhHHHHHhcCCEEc
Confidence 444455 45888999999999999999999975553 234667777788998654
No 305
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=56.78 E-value=91 Score=27.30 Aligned_cols=53 Identities=26% Similarity=0.388 Sum_probs=37.0
Q ss_pred cCCCCCCceEEEEeCCChHHHHHHHHHHHcC-CcEEEEeCCCCCHHHHHHHHHCCCEE
Q 025113 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARG-YNLIIVMPSTCSMERRIVLRALGAEI 118 (257)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g-~~~~i~vp~~~~~~~~~~l~~~Ga~v 118 (257)
...+.+|.+.+|. ..|..|.+++..|+.+| .++++ + ..+..+...++.+|++-
T Consensus 161 ~~~~~~g~~vlI~-g~g~~g~~~~~~a~~~G~~~v~~-~--~~~~~~~~~~~~~g~~~ 214 (345)
T cd08286 161 NGKVKPGDTVAIV-GAGPVGLAALLTAQLYSPSKIIM-V--DLDDNRLEVAKKLGATH 214 (345)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEE-E--cCCHHHHHHHHHhCCCc
Confidence 3456667676665 46999999999999999 55444 3 23556677778888843
No 306
>PRK05854 short chain dehydrogenase; Provisional
Probab=56.55 E-value=1.1e+02 Score=26.82 Aligned_cols=73 Identities=21% Similarity=0.271 Sum_probs=43.9
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHC--CCEEEEECCC-CCHHHHHHHHHHHHHhC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRAL--GAEIILADSA-LRFEEILEKGEEILKKT 141 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~--Ga~v~~~~~~-~~~~~~~~~~~~~~~~~ 141 (257)
.+.+|+..++--|.++|..-...|.++++....... ....+.++.. +.++..+..+ .+.++..+.++++.++.
T Consensus 15 k~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 15 KRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 367888888999999999888889888776554221 1122333322 3455444322 24555666666665544
No 307
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=56.44 E-value=24 Score=26.98 Aligned_cols=35 Identities=31% Similarity=0.435 Sum_probs=23.2
Q ss_pred CCCCceEEEEeCCChHHHHH--HHHHHHcCCcEEEEe
Q 025113 65 ITPGKTTLIEVTSGNTGVGL--AFIAAARGYNLIIVM 99 (257)
Q Consensus 65 ~~~g~~~vv~~ssGN~~~al--A~~a~~~g~~~~i~v 99 (257)
++||+.-|+.++|||+..-+ +..|+..|++++.+.
T Consensus 101 ~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 101 IRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp --TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 45667777788889887765 455899999998764
No 308
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=56.33 E-value=89 Score=28.30 Aligned_cols=55 Identities=16% Similarity=0.146 Sum_probs=37.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~ 124 (257)
..++..++|..|..++..+-..+-.-.|++|..+-......+...|++++.++.+
T Consensus 47 ~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~d 101 (376)
T TIGR02379 47 KKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (376)
T ss_pred CeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 4567777777776655544323333467778776666777778899999999853
No 309
>PRK06500 short chain dehydrogenase; Provisional
Probab=56.18 E-value=1.1e+02 Score=25.05 Aligned_cols=70 Identities=16% Similarity=0.110 Sum_probs=42.1
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHHHHh
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA-LRFEEILEKGEEILKK 140 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~~~~~~~~ 140 (257)
.+.+|+..+|..|.+++......|.+++++.... .......+.+|.++..+..+ .+.++..+..++..+.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRDP--ASLEAARAELGESALVIRADAGDVAAQKALAQALAEA 77 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCH--HHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 4678899999999999999888999876654321 11122334457776555432 2334443444444443
No 310
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=56.17 E-value=1.3e+02 Score=26.40 Aligned_cols=47 Identities=19% Similarity=0.226 Sum_probs=32.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~ 119 (257)
.+++.-..|..|++++..++.+|.+++++-+. +.+..+.+.+|++.+
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~---~~~~~~~~~~G~~~~ 199 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARK---SAHLARITEMGLSPF 199 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHcCCeee
Confidence 34666667889999888888888866665433 344566667787653
No 311
>PRK12744 short chain dehydrogenase; Provisional
Probab=56.17 E-value=94 Score=25.89 Aligned_cols=72 Identities=21% Similarity=0.160 Sum_probs=43.9
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCC-CC----HHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPST-CS----MERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK 140 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~-~~----~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~ 140 (257)
...+|+..+|.-|.++|..-...|.+++++.... .. ....+.++..|.++..+..+- +.++..+...+..++
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 86 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKAA 86 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHHh
Confidence 3668888999999999998888899966665321 11 122344556677776555332 234444444444433
No 312
>PRK06483 dihydromonapterin reductase; Provisional
Probab=56.15 E-value=1.1e+02 Score=25.00 Aligned_cols=68 Identities=25% Similarity=0.255 Sum_probs=44.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHh
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKK 140 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~ 140 (257)
+.+|+..+|--|.++|......|.+++++-.... ...+.++..|++.+.++-. +.++..+..++..+.
T Consensus 4 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~~ 71 (236)
T PRK06483 4 PILITGAGQRIGLALAWHLLAQGQPVIVSYRTHY--PAIDGLRQAGAQCIQADFS-TNAGIMAFIDELKQH 71 (236)
T ss_pred eEEEECCCChHHHHHHHHHHHCCCeEEEEeCCch--hHHHHHHHcCCEEEEcCCC-CHHHHHHHHHHHHhh
Confidence 5688899999999999998889998887654322 2345556678777766642 334444444444443
No 313
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=56.06 E-value=1.2e+02 Score=26.62 Aligned_cols=58 Identities=26% Similarity=0.300 Sum_probs=39.9
Q ss_pred HHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (257)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~ 120 (257)
.+...+.+|...+|. ..|..|.+++..|+.+|.+.++++.. +..+...++.+|++-+.
T Consensus 155 ~~~~~~~~g~~vlI~-g~g~vG~~a~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~vi 212 (343)
T cd05285 155 CRRAGVRPGDTVLVF-GAGPIGLLTAAVAKAFGATKVVVTDI--DPSRLEFAKELGATHTV 212 (343)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCcEEe
Confidence 356777888776665 46788999888999999884333322 34566666777886544
No 314
>PRK06701 short chain dehydrogenase; Provisional
Probab=55.93 E-value=1.3e+02 Score=25.81 Aligned_cols=55 Identities=22% Similarity=0.272 Sum_probs=39.3
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHCCCEEEEECC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADS 123 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~--~~~~~~l~~~Ga~v~~~~~ 123 (257)
...+|+..+|.-|.++|......|.+++++...... ......++..|.++..+..
T Consensus 47 k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (290)
T PRK06701 47 KVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPG 103 (290)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEc
Confidence 356888899999999999988899998777654322 2334455666877766654
No 315
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=55.89 E-value=1.2e+02 Score=26.04 Aligned_cols=49 Identities=27% Similarity=0.367 Sum_probs=35.9
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~ 120 (257)
...+|...+|..|.+++..|+..|.+++++.+ +..+.+.++.+|++-+.
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~ 196 (325)
T cd05280 148 GPVLVTGATGGVGSIAVAILAKLGYTVVALTG---KEEQADYLKSLGASEVL 196 (325)
T ss_pred CEEEEECCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCcEEE
Confidence 35566667799999999999999998555433 34567777889985443
No 316
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=55.84 E-value=1.3e+02 Score=25.61 Aligned_cols=72 Identities=24% Similarity=0.200 Sum_probs=41.1
Q ss_pred ceEEEEeCCC--hHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHH-HHCCCEE-EEECCCCCHHHHHHHHHHHHHhC
Q 025113 69 KTTLIEVTSG--NTGVGLAFIAAARGYNLIIVMPSTCSMERRIVL-RALGAEI-ILADSALRFEEILEKGEEILKKT 141 (257)
Q Consensus 69 ~~~vv~~ssG--N~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l-~~~Ga~v-~~~~~~~~~~~~~~~~~~~~~~~ 141 (257)
...+|+..++ .-|.++|......|.+++++-.......+.+.+ +..|..+ +.++- .+.++..+..++..++.
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv-~d~~~v~~~~~~~~~~~ 83 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDV-EDIASVDAVFEALEKKW 83 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCC-CCHHHHHHHHHHHHHHh
Confidence 4667887775 789999999888999887764322122233333 3446433 33343 23444555555555443
No 317
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=55.77 E-value=94 Score=28.33 Aligned_cols=59 Identities=25% Similarity=0.272 Sum_probs=39.1
Q ss_pred cCCCCCCceEEEEeCCChHHHHHHHHHHHcCC--cEEEEeCCCCCHHHHHHHHHC--------CCEEEEEC
Q 025113 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGY--NLIIVMPSTCSMERRIVLRAL--------GAEIILAD 122 (257)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~--~~~i~vp~~~~~~~~~~l~~~--------Ga~v~~~~ 122 (257)
...+++|.+.+|...+|-.|.+....|+.+|. ..++.+ ..++.+++.++.+ |++...++
T Consensus 170 ~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~--~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~ 238 (410)
T cd08238 170 RMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVT--DVNDERLARAQRLFPPEAASRGIELLYVN 238 (410)
T ss_pred hcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEE--cCCHHHHHHHHHhccccccccCceEEEEC
Confidence 35567777766766789999998888998875 223332 3356677777776 66644444
No 318
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=55.59 E-value=1.2e+02 Score=25.10 Aligned_cols=71 Identities=23% Similarity=0.259 Sum_probs=44.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK 140 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~--~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~ 140 (257)
+.+|+..+|.-|.+++..-...|.+++++.....+ ....+.++..+.++..+..+- +.++..+..++..++
T Consensus 4 ~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (256)
T PRK12745 4 VALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAA 77 (256)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 46788999999999999988889988777643222 233445555677666655332 233444444444443
No 319
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=55.42 E-value=34 Score=32.83 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=39.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCC------------------CCHHHHHHHHHCCCEEEEE
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPST------------------CSMERRIVLRALGAEIILA 121 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~------------------~~~~~~~~l~~~Ga~v~~~ 121 (257)
..|+.-.+|-.|++.|..++..|.++++|=... ....+++.++.+|++++.-
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~ 207 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLG 207 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 458888999999999999999999987764221 1244667788899987653
No 320
>PRK09291 short chain dehydrogenase; Provisional
Probab=55.34 E-value=53 Score=27.30 Aligned_cols=53 Identities=21% Similarity=0.185 Sum_probs=35.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCH-HHHHHHHHCCCEEEEEC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM-ERRIVLRALGAEIILAD 122 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~-~~~~~l~~~Ga~v~~~~ 122 (257)
+.+|+..+|..|.+++......|.+++++....... .........|.++..+.
T Consensus 4 ~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 57 (257)
T PRK09291 4 TILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEK 57 (257)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEE
Confidence 568899999999999999889999988877642211 12223344555555444
No 321
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=55.07 E-value=97 Score=26.96 Aligned_cols=52 Identities=27% Similarity=0.256 Sum_probs=36.1
Q ss_pred CCCCCceEEEEeCCChHHHHHHHHHHHcC-CcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 025113 64 LITPGKTTLIEVTSGNTGVGLAFIAAARG-YNLIIVMPSTCSMERRIVLRALGAEII 119 (257)
Q Consensus 64 ~~~~g~~~vv~~ssGN~~~alA~~a~~~g-~~~~i~vp~~~~~~~~~~l~~~Ga~v~ 119 (257)
.+.+|...+|.. .|..|.+++..|+..| .+++++.. ++.+.+.++.+|++-+
T Consensus 164 ~~~~~~~vlI~g-~~~vg~~~~~~a~~~g~~~v~~~~~---~~~~~~~~~~~g~~~~ 216 (340)
T cd05284 164 YLDPGSTVVVIG-VGGLGHIAVQILRALTPATVIAVDR---SEEALKLAERLGADHV 216 (340)
T ss_pred cCCCCCEEEEEc-CcHHHHHHHHHHHHhCCCcEEEEeC---CHHHHHHHHHhCCcEE
Confidence 355666666666 5669999999999998 77665533 3456777788887443
No 322
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=54.96 E-value=1.3e+02 Score=25.23 Aligned_cols=69 Identities=13% Similarity=0.120 Sum_probs=41.8
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH-HCCCEEEEECCC-CCHHHHHHHHHHHHHh
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLR-ALGAEIILADSA-LRFEEILEKGEEILKK 140 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~-~~Ga~v~~~~~~-~~~~~~~~~~~~~~~~ 140 (257)
...+|+..+|.-|.++|......|.+++++-.. ..+.+.+. .+|.++..+..+ .+.++..+..++..++
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDKS---AAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAA 76 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHH
Confidence 467888999999999999998999987765332 23333333 346566555432 2233333444444444
No 323
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=54.92 E-value=1.3e+02 Score=26.89 Aligned_cols=45 Identities=24% Similarity=0.225 Sum_probs=32.9
Q ss_pred ChHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHH----HHHCCCEEEEEC
Q 025113 78 GNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIV----LRALGAEIILAD 122 (257)
Q Consensus 78 GN~~~alA~~a~~~g~~~~i~vp~~~--~~~~~~~----l~~~Ga~v~~~~ 122 (257)
.|.+++++.+++.+|..++++.|+.. +...+.. .+..|+++....
T Consensus 166 ~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (332)
T PRK04284 166 NNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITD 216 (332)
T ss_pred cchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 58999999999999999999999853 3333322 345788877665
No 324
>PRK08265 short chain dehydrogenase; Provisional
Probab=54.75 E-value=1.3e+02 Score=25.25 Aligned_cols=70 Identities=16% Similarity=0.142 Sum_probs=41.6
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK 140 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~ 140 (257)
.+.+|+..+|--|.++|......|.+++++-... ....+..+..+.++..+..+- +.++..+..++..++
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDA--DNGAAVAASLGERARFIATDITDDAAIERAVATVVAR 77 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHH
Confidence 4678888999999999999888999877664332 112222334466665554322 233333444444443
No 325
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=54.74 E-value=1.2e+02 Score=28.28 Aligned_cols=53 Identities=17% Similarity=0.034 Sum_probs=37.7
Q ss_pred EEEEeCCChHHHHHHHHHHH--------cCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113 71 TLIEVTSGNTGVGLAFIAAA--------RGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (257)
Q Consensus 71 ~vv~~ssGN~~~alA~~a~~--------~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (257)
.++..++|..+..+|+.+.. .+-.-.|++|..+-......+...|++++.++.
T Consensus 80 ~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdv 140 (438)
T PRK15407 80 YALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDV 140 (438)
T ss_pred eEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEec
Confidence 46777778888777776541 222346778877767777788889999998875
No 326
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=54.68 E-value=1.1e+02 Score=26.45 Aligned_cols=56 Identities=23% Similarity=0.323 Sum_probs=38.5
Q ss_pred cCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 025113 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (257)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~ 121 (257)
...+.++...+|. ..|..|.++...++..|.+++++.+ +..+.+.++.+|++.+..
T Consensus 157 ~~~~~~~~~vlI~-g~g~iG~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~~ 212 (330)
T cd08245 157 DAGPRPGERVAVL-GIGGLGHLAVQYARAMGFETVAITR---SPDKRELARKLGADEVVD 212 (330)
T ss_pred hhCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHhCCcEEec
Confidence 3456666665665 5566999999999999998766544 345566677788765543
No 327
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=54.51 E-value=1.4e+02 Score=25.46 Aligned_cols=57 Identities=30% Similarity=0.418 Sum_probs=42.0
Q ss_pred HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 025113 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (257)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~ 121 (257)
+.+.+.+|...+|...+|..|.+++..++..|.++++..+. .+.+.++.+|++-+.-
T Consensus 138 ~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~----~~~~~~~~~g~~~~~~ 194 (326)
T cd08272 138 DRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATASS----EKAAFARSLGADPIIY 194 (326)
T ss_pred HhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEech----HHHHHHHHcCCCEEEe
Confidence 45667777776776678999999999999999987666532 4566667788854443
No 328
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=54.39 E-value=50 Score=32.34 Aligned_cols=54 Identities=22% Similarity=0.309 Sum_probs=41.0
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC--------------C----HHHHHHHHHCCCEEEEEC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC--------------S----MERRIVLRALGAEIILAD 122 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~--------------~----~~~~~~l~~~Ga~v~~~~ 122 (257)
...|+.-.+|-.|++.|+..++.|.+++||-.... + ...++.++.+|.+++.-.
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~ 381 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNC 381 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCC
Confidence 35688889999999999999999999998854321 1 124667788998886543
No 329
>PRK06841 short chain dehydrogenase; Provisional
Probab=54.36 E-value=1.2e+02 Score=24.99 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=27.0
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~ 101 (257)
.+.+|+..+|--|.++|......|.+++++...
T Consensus 16 k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~ 48 (255)
T PRK06841 16 KVAVVTGGASGIGHAIAELFAAKGARVALLDRS 48 (255)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 366888899999999999988899987766554
No 330
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=54.07 E-value=1.2e+02 Score=29.05 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=39.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (257)
.+++.-..|..|++.+..++.+|..++++- ....++++.+.+|++.+.++.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d---~~~~rle~a~~lGa~~v~v~~ 215 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFD---TRPEVKEQVQSMGAEFLELDF 215 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEe---CCHHHHHHHHHcCCeEEeccc
Confidence 356777789999999999999998755542 345578888889999877763
No 331
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=53.97 E-value=1.4e+02 Score=25.59 Aligned_cols=46 Identities=22% Similarity=0.161 Sum_probs=31.0
Q ss_pred HHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcC----CCcEEEEEeCCC
Q 025113 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENN----PDIKVYGVEPSE 211 (257)
Q Consensus 163 ~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~----~~~~vigv~~~~ 211 (257)
...+++++. +++|.|++. +...+.|+..++++.+ .++.|+|.+-..
T Consensus 192 ~~~~~l~~~-~~~~ai~~~--~d~~A~g~~~al~~~g~~vp~di~vig~D~~~ 241 (305)
T cd06324 192 QAENLLKRY-PDVRLIWAA--NDQMAFGALRAAKEAGRKPGRDVLFGGVNWSP 241 (305)
T ss_pred HHHHHHHHC-CCccEEEEC--CchHHHHHHHHHHHcCCCcCCCEEEEecCCCH
Confidence 444555543 468988863 4556678999998865 358888886543
No 332
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=53.84 E-value=1.2e+02 Score=24.74 Aligned_cols=70 Identities=19% Similarity=0.103 Sum_probs=43.6
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHhC
Q 025113 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADSAL-RFEEILEKGEEILKKT 141 (257)
Q Consensus 72 vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~--~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~~ 141 (257)
+|+..+|.-|.++|......|.+++++...+.+ ....+.++..+.++..+..+- +.++..+..++..++.
T Consensus 2 lItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 74 (239)
T TIGR01831 2 LVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEH 74 (239)
T ss_pred EEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 678889999999999998899997766543322 223445566677776665432 2333333444444433
No 333
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=53.82 E-value=96 Score=25.55 Aligned_cols=55 Identities=16% Similarity=0.140 Sum_probs=38.4
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHCCCEEEEECC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIVLRALGAEIILADS 123 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~--~~~~~~~l~~~Ga~v~~~~~ 123 (257)
.+.+|+.++|--|.+++......|.++++...... .......++..|.++..+..
T Consensus 7 ~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (252)
T PRK06077 7 KVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLA 63 (252)
T ss_pred cEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEe
Confidence 36688889999999999988889998776553322 12334556677777766553
No 334
>PRK06720 hypothetical protein; Provisional
Probab=53.55 E-value=1.1e+02 Score=24.23 Aligned_cols=73 Identities=15% Similarity=0.096 Sum_probs=41.7
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCH-HHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHHHHhC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM-ERRIVLRALGAEIILADSA-LRFEEILEKGEEILKKT 141 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~-~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~~~~~~~~~ 141 (257)
...+|+..++--|.++|......|.+++++-...... ...+.+...|.++..+..+ .+.++..+..++..++.
T Consensus 17 k~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~ 91 (169)
T PRK06720 17 KVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAF 91 (169)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3667888888899999988888888766654332211 1124444556665444322 13344444444444443
No 335
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=53.39 E-value=84 Score=28.64 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=30.2
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCC-CCCHHH
Q 025113 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPS-TCSMER 107 (257)
Q Consensus 71 ~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~-~~~~~~ 107 (257)
+|-.-..|..|+-++.+|+.+|++++++-|. +.+...
T Consensus 3 tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~ 40 (375)
T COG0026 3 TVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQ 40 (375)
T ss_pred eEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhh
Confidence 3555678999999999999999999999986 444444
No 336
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=53.22 E-value=30 Score=27.94 Aligned_cols=40 Identities=30% Similarity=0.424 Sum_probs=30.7
Q ss_pred hHHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEE
Q 025113 162 TTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGV 207 (257)
Q Consensus 162 t~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv 207 (257)
..+.+|.++ +-.||.|+.-.|=|.++ ++|+.+|++++++-
T Consensus 55 ~a~~~L~~~-Gf~PDvI~~H~GWGe~L-----flkdv~P~a~li~Y 94 (171)
T PF12000_consen 55 RAARQLRAQ-GFVPDVIIAHPGWGETL-----FLKDVFPDAPLIGY 94 (171)
T ss_pred HHHHHHHHc-CCCCCEEEEcCCcchhh-----hHHHhCCCCcEEEE
Confidence 344455454 56799999999888754 68999999999985
No 337
>PLN02583 cinnamoyl-CoA reductase
Probab=53.18 E-value=1.1e+02 Score=26.43 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=29.0
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~ 101 (257)
...+|+..+|-.|.+++......|.++++++..
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~ 39 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQK 39 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 467889999999999999998999999988864
No 338
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=53.15 E-value=99 Score=25.48 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=37.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCH-HHHHHHHHCCCEEEEECC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM-ERRIVLRALGAEIILADS 123 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~-~~~~~l~~~Ga~v~~~~~ 123 (257)
+.+|+..+|-.|.+++......|.+++++....... .....++..+.++..+..
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 57 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVA 57 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEC
Confidence 568888999999999988888899877776543222 222334556777766654
No 339
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=53.05 E-value=69 Score=30.67 Aligned_cols=45 Identities=11% Similarity=-0.000 Sum_probs=36.7
Q ss_pred ChHHHHHHHHHHHcC-CcEEEEeCCCC--CHHHHHHHHHCCCEEEEEC
Q 025113 78 GNTGVGLAFIAAARG-YNLIIVMPSTC--SMERRIVLRALGAEIILAD 122 (257)
Q Consensus 78 GN~~~alA~~a~~~g-~~~~i~vp~~~--~~~~~~~l~~~Ga~v~~~~ 122 (257)
+|.+.+++.+++.+| +.++++.|+.- ++..+..++..|+.+....
T Consensus 186 ~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~ 233 (525)
T PRK13376 186 GRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFS 233 (525)
T ss_pred CcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 799999999999998 99999999864 5555666777888887665
No 340
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=52.98 E-value=1.4e+02 Score=25.11 Aligned_cols=73 Identities=22% Similarity=0.152 Sum_probs=41.7
Q ss_pred ceEEEEeCC--ChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH-HC-CCEEEEECCC-CCHHHHHHHHHHHHHhC
Q 025113 69 KTTLIEVTS--GNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLR-AL-GAEIILADSA-LRFEEILEKGEEILKKT 141 (257)
Q Consensus 69 ~~~vv~~ss--GN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~-~~-Ga~v~~~~~~-~~~~~~~~~~~~~~~~~ 141 (257)
...+|+.++ +.-|.++|..-...|.++++.-........++.+. .. |.++..+..+ .+.++..+..++..++.
T Consensus 8 k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 85 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEV 85 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence 356777754 78999999998889998777643322233333332 22 4555544432 23444444555555544
No 341
>PRK08264 short chain dehydrogenase; Validated
Probab=52.88 E-value=78 Score=25.93 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=27.2
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCC-cEEEEeCC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGY-NLIIVMPS 101 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~-~~~i~vp~ 101 (257)
.+.+|+..+|.-|.++|......|. +++++...
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~ 40 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAARD 40 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence 3568889999999999999999998 77666644
No 342
>PRK08339 short chain dehydrogenase; Provisional
Probab=52.73 E-value=1.1e+02 Score=25.85 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=27.1
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp 100 (257)
...+|+.++|.-|.++|......|.+++++-.
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~V~~~~r 40 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGADVILLSR 40 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 46788999999999999999999998777654
No 343
>PHA02542 41 41 helicase; Provisional
Probab=52.73 E-value=2.1e+02 Score=27.07 Aligned_cols=148 Identities=16% Similarity=0.128 Sum_probs=68.1
Q ss_pred CCCCCCceEEEEe--CCChHHHHHHHH--HHHcCCcEEEEeCCCCCHHHHHHHH--HCCCEEEEECCCCCHHHHHHHHHH
Q 025113 63 GLITPGKTTLIEV--TSGNTGVGLAFI--AAARGYNLIIVMPSTCSMERRIVLR--ALGAEIILADSALRFEEILEKGEE 136 (257)
Q Consensus 63 g~~~~g~~~vv~~--ssGN~~~alA~~--a~~~g~~~~i~vp~~~~~~~~~~l~--~~Ga~v~~~~~~~~~~~~~~~~~~ 136 (257)
|-+.+|...|+.+ +.|-+..++-.+ +...|.++.+|--+.........+. ..+.....+.. .+.++-.+....
T Consensus 185 gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql~~Rl~a~~~~i~~~~l~~-l~~~~~~~~~~~ 263 (473)
T PHA02542 185 GGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVIAKRIDANLLDVSLDDIDD-LSKAEYKAKMEK 263 (473)
T ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHcCCCHHHHhh-cCHHHHHHHHHH
Confidence 4567776766665 447777665444 4456777766655544443333332 22222211111 111111122222
Q ss_pred HHHhCCCeEEeCCCCCCcchHhhHhhHHHHHHhhhCCCCCEEEEe----c--C----c-h---hHHHHHHHHHHhcCC--
Q 025113 137 ILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISG----I--G----T-G---GTVTGAGRFLKENNP-- 200 (257)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~p----v--G----~-G---g~~aGi~~~~k~~~~-- 200 (257)
+.....+..|+..++.+............++..+-+..+|.||+= + + . . --++-+++.+|.+..
T Consensus 264 ~~~~~~~~l~I~~~d~~~lt~~~ir~~~rrlk~~~g~~~dlVvIDYLqL~~~~~~~~~~~nr~~ei~~Isr~LK~lAkel 343 (473)
T PHA02542 264 LRSKTQGKLIIKQYPTGGAHAGHFRALLNELKLKKNFKPDVIIVDYLGICASSRLRVSSENSYTYVKAIAEELRGLAVEH 343 (473)
T ss_pred HHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEechhhccCCcccCCCCChHHHHHHHHHHHHHHHHHh
Confidence 222122445554433333323344555555554432236655531 1 1 1 1 124568888887643
Q ss_pred CcEEEEEeCCC
Q 025113 201 DIKVYGVEPSE 211 (257)
Q Consensus 201 ~~~vigv~~~~ 211 (257)
++.||++...+
T Consensus 344 ~vpVi~lsQLn 354 (473)
T PHA02542 344 DVVVWTAAQTT 354 (473)
T ss_pred CCeEEEEEeeC
Confidence 57777764433
No 344
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=52.71 E-value=64 Score=29.99 Aligned_cols=53 Identities=19% Similarity=0.172 Sum_probs=41.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCC-----CCHHHHHHHHHCCCEEEEEC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPST-----CSMERRIVLRALGAEIILAD 122 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~-----~~~~~~~~l~~~Ga~v~~~~ 122 (257)
+.|+.-.+||.|.-+|..+.++|.+++++.... .....++.++..|.+++.-.
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~~~ 330 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHFLC 330 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEecc
Confidence 458888999999999999999999999988642 23444566778888877543
No 345
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=52.71 E-value=1.3e+02 Score=26.22 Aligned_cols=55 Identities=31% Similarity=0.437 Sum_probs=40.4
Q ss_pred HHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCE
Q 025113 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (257)
Q Consensus 60 ~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~ 117 (257)
...+.+.+|...+|.+ .|-.|.++...++..|.+.++.+.. ++.+...++.+|++
T Consensus 154 ~~~~~~~~g~~VlI~g-~g~vg~~~~~la~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 208 (341)
T cd08262 154 VRRARLTPGEVALVIG-CGPIGLAVIAALKARGVGPIVASDF--SPERRALALAMGAD 208 (341)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCc
Confidence 3456677777766664 5889999888999999886555433 56777777888985
No 346
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=52.62 E-value=1.1e+02 Score=26.47 Aligned_cols=120 Identities=16% Similarity=0.137 Sum_probs=63.9
Q ss_pred HHHHHHHH-HHcCCcEEEEeCC-CCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHh
Q 025113 81 GVGLAFIA-AARGYNLIIVMPS-TCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKI 158 (257)
Q Consensus 81 ~~alA~~a-~~~g~~~~i~vp~-~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (257)
|.++-+++ +.+|-++..-+|. +.-+...+.+..-|-.|...++. -.-..+.+..+.++.|+..++.-.+-...+..
T Consensus 72 G~gvV~~ar~~~g~~~~~rv~G~Dl~~~Ll~~a~~~~~~vfllGgk--p~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e 149 (253)
T COG1922 72 GIGVVRAARRLLGQPLPERVAGTDLVEALLKRAAEEGKRVFLLGGK--PGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEE 149 (253)
T ss_pred chhHHHHHHHHhCccCcccCChHHHHHHHHHHhCccCceEEEecCC--HHHHHHHHHHHHHHCCCceEEEecCCCCChhh
Confidence 45678888 6677776544444 22233444455557789999964 22334455667777775444322211111111
Q ss_pred hHhhHHHHHHhhhC-CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEe
Q 025113 159 HYETTGPEIWQDSG-GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVE 208 (257)
Q Consensus 159 g~~t~~~Ei~~ql~-~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~ 208 (257)
- . .|++.+. .+||.++|..|.-.-=-=+... +...+..-.+||-
T Consensus 150 ~-~----~i~~~I~~s~pdil~VgmG~P~QE~wi~~~-~~~~~~~v~igVG 194 (253)
T COG1922 150 E-E----AIVERIAASGPDILLVGMGVPRQEIWIARN-RQQLPVAVAIGVG 194 (253)
T ss_pred H-H----HHHHHHHhcCCCEEEEeCCCchhHHHHHHh-HHhcCCceEEecc
Confidence 1 1 3444442 3699999999985433223333 2334445556663
No 347
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=52.52 E-value=2.2e+02 Score=27.37 Aligned_cols=60 Identities=22% Similarity=0.176 Sum_probs=49.9
Q ss_pred CCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCC
Q 025113 65 ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (257)
Q Consensus 65 ~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~ 124 (257)
+++|....+.+...-+...++++|-..|..+.-+-|...+.+...+++.-.++++.++..
T Consensus 69 i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~ 128 (537)
T KOG1176|consen 69 IKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDED 128 (537)
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEEEEcCc
Confidence 555655555666677788889999999999988888888899999999999999999963
No 348
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=52.49 E-value=78 Score=22.12 Aligned_cols=77 Identities=10% Similarity=0.094 Sum_probs=47.5
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHH--HHHHcCCcEEEEeCCCCCHHHHHHHHHC-CCEEEE
Q 025113 44 CSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF--IAAARGYNLIIVMPSTCSMERRIVLRAL-GAEIIL 120 (257)
Q Consensus 44 tGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~--~a~~~g~~~~i~vp~~~~~~~~~~l~~~-Ga~v~~ 120 (257)
.|....-.+..+..+...... ...++.+++-++.-|++. .|...+.|..++- ...+......++.+ ..+|+.
T Consensus 4 ~G~dRyeTs~~va~~~~~~~~----~~~v~ia~g~~~~Dalsa~~~a~~~~~PIll~~-~~l~~~~~~~l~~~~~~~v~i 78 (92)
T PF04122_consen 4 SGADRYETSAKVAKKFYPDNK----SDKVYIASGDNFADALSASPLAAKNNAPILLVN-NSLPSSVKAFLKSLNIKKVYI 78 (92)
T ss_pred CCCCHHHHHHHHHHHhcccCC----CCEEEEEeCcchhhhhhhHHHHHhcCCeEEEEC-CCCCHHHHHHHHHcCCCEEEE
Confidence 454444455666666433221 245666666666655555 4555676666555 77788888888887 568888
Q ss_pred ECCCC
Q 025113 121 ADSAL 125 (257)
Q Consensus 121 ~~~~~ 125 (257)
+++..
T Consensus 79 iGg~~ 83 (92)
T PF04122_consen 79 IGGEG 83 (92)
T ss_pred ECCCC
Confidence 88653
No 349
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=52.43 E-value=1.1e+02 Score=27.61 Aligned_cols=49 Identities=20% Similarity=0.321 Sum_probs=34.6
Q ss_pred EeCCChHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHH----HCCCEEEEEC
Q 025113 74 EVTSGNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIVLR----ALGAEIILAD 122 (257)
Q Consensus 74 ~~ssGN~~~alA~~a~~~g~~~~i~vp~~~--~~~~~~~l~----~~Ga~v~~~~ 122 (257)
.+-..|.+.++..+++++|+.++++.|+.- +...+..++ ..|+++....
T Consensus 160 vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (338)
T PRK02255 160 VGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTD 214 (338)
T ss_pred ECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEc
Confidence 344468999999999999999999999853 334444433 3577777655
No 350
>PRK06836 aspartate aminotransferase; Provisional
Probab=52.33 E-value=1.8e+02 Score=26.24 Aligned_cols=82 Identities=12% Similarity=0.205 Sum_probs=42.0
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCC-HHHHHHHHHHHHHhCCCeEEeCC
Q 025113 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR-FEEILEKGEEILKKTPDGYLLRQ 149 (257)
Q Consensus 71 ~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 149 (257)
.|+..++++.+..++..+- +.-.-.|+++...-..-...++.+|++++.++.+.+ +.--.+..++..++....+++..
T Consensus 98 ~i~~t~G~~~al~~~~~~l-~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~~~~~v~~~~ 176 (394)
T PRK06836 98 HIVMTCGAAGALNVALKAI-LNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDTDTFQPDLDALEAAITPKTKAVIINS 176 (394)
T ss_pred cEEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCCccHHHHHHHcCCEEEEEecCCccCcCCHHHHHhhcCcCceEEEEeC
Confidence 4666666677766554332 232334555554433345567789999999875322 11111223333333345566654
Q ss_pred CCCC
Q 025113 150 FENP 153 (257)
Q Consensus 150 ~~~~ 153 (257)
..||
T Consensus 177 p~NP 180 (394)
T PRK06836 177 PNNP 180 (394)
T ss_pred CCCC
Confidence 4444
No 351
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=52.22 E-value=1.4e+02 Score=24.95 Aligned_cols=73 Identities=19% Similarity=0.104 Sum_probs=44.7
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHH-HCCCEEEEECCC-CCHHHHHHHHHHHHHhC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLR-ALGAEIILADSA-LRFEEILEKGEEILKKT 141 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~--~~~~~~l~-~~Ga~v~~~~~~-~~~~~~~~~~~~~~~~~ 141 (257)
.+.+|+.+++.-|.++|......|.+++++...+.+ ....+.++ ..|.++..+..+ .+.++..+...+..++.
T Consensus 9 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (260)
T PRK08416 9 KTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDEDF 85 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 467888999999999999988999987776543321 11122333 346666655532 23444555555555544
No 352
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=52.21 E-value=56 Score=25.62 Aligned_cols=46 Identities=30% Similarity=0.346 Sum_probs=35.4
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (257)
Q Consensus 72 vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~ 122 (257)
+|...+|+.|..++-.....|.+++++++...+... ..+.+++..+
T Consensus 2 ~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-----~~~~~~~~~d 47 (183)
T PF13460_consen 2 LVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-----SPGVEIIQGD 47 (183)
T ss_dssp EEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-----CTTEEEEESC
T ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-----ccccccceee
Confidence 577889999999999999999999999987543333 4455555444
No 353
>PRK07774 short chain dehydrogenase; Provisional
Probab=52.18 E-value=1.3e+02 Score=24.77 Aligned_cols=72 Identities=13% Similarity=0.104 Sum_probs=42.6
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHHHHh
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADSA-LRFEEILEKGEEILKK 140 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~~~~~~~~ 140 (257)
.+.+|+.++|--|.+++......|.+++++...... ....+.++..+.++..+..+ .+..+..+..++..++
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSA 80 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 356889999999999999988899988777654222 12223344455555444432 1233333334444333
No 354
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=52.08 E-value=68 Score=29.17 Aligned_cols=89 Identities=16% Similarity=0.236 Sum_probs=39.3
Q ss_pred CcEEEEeCCCCCHHHHHHHHHCCC-EEEEECCCCCHHH--HHHHHHHHHHhCC-CeEEeCCC-CCCcchHhhHhhHHHHH
Q 025113 93 YNLIIVMPSTCSMERRIVLRALGA-EIILADSALRFEE--ILEKGEEILKKTP-DGYLLRQF-ENPANPKIHYETTGPEI 167 (257)
Q Consensus 93 ~~~~i~vp~~~~~~~~~~l~~~Ga-~v~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~g~~t~~~Ei 167 (257)
.+..++.-.+.-...-+.++.+|. ++.++.+. ...+ ..+...+..++.+ .....+.. .||. .....-+.++
T Consensus 7 ~~~~i~~G~g~l~~l~~~~~~~g~~~~lvvtd~-~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~---~~~v~~~~~~ 82 (382)
T PRK10624 7 LNETAYFGRGAIGALTDEVKRRGFKKALIVTDK-TLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPT---IEVVKEGVEV 82 (382)
T ss_pred CCCeEEECcCHHHHHHHHHHhcCCCEEEEEeCc-chhhCcchHHHHHHHHHCCCeEEEeCCCCCCcC---HHHHHHHHHH
Confidence 455555554444444455666774 55555432 2222 2333444334332 12222211 2332 1112223344
Q ss_pred HhhhCCCCCEEEEecCchhHH
Q 025113 168 WQDSGGKVDAFISGIGTGGTV 188 (257)
Q Consensus 168 ~~ql~~~~d~iv~pvG~Gg~~ 188 (257)
+++. ++| +|+.+|+|+.+
T Consensus 83 ~~~~--~~D-~IIaiGGGS~i 100 (382)
T PRK10624 83 FKAS--GAD-YLIAIGGGSPQ 100 (382)
T ss_pred HHhc--CCC-EEEEeCChHHH
Confidence 4443 567 57888988754
No 355
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=51.93 E-value=1.7e+02 Score=25.90 Aligned_cols=54 Identities=24% Similarity=0.323 Sum_probs=36.5
Q ss_pred HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCE
Q 025113 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (257)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~ 117 (257)
+...+.+|...+|. ..|..|.++...|+..|.+.++++.. +..+.+.++.+|+.
T Consensus 176 ~~~~~~~g~~vLI~-g~g~vG~a~i~lak~~G~~~Vi~~~~--~~~~~~~~~~~g~~ 229 (363)
T cd08279 176 NTARVRPGDTVAVI-GCGGVGLNAIQGARIAGASRIIAVDP--VPEKLELARRFGAT 229 (363)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEcC--CHHHHHHHHHhCCe
Confidence 34556677666666 56889999999999999873333322 44455666778874
No 356
>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]
Probab=51.91 E-value=2.2e+02 Score=27.21 Aligned_cols=90 Identities=19% Similarity=0.109 Sum_probs=67.7
Q ss_pred eEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH
Q 025113 33 RIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLR 112 (257)
Q Consensus 33 ~l~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~ 112 (257)
.+-++.|...-|+|-=.-.+..+..-++..| |++|+..-+.++...+=.-..++|++.|+-..-+-|..-+.+....|+
T Consensus 68 a~Vf~~eg~R~Tf~~~~~ev~slAaGll~lG-L~kGDrVgvwgpN~~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~ 146 (596)
T KOG1177|consen 68 AAVFDHEGIRLTFSEFVSEVESLAAGLLSLG-LKKGDRVGVWGPNSYEWVLCQLACARAGLVLVNLNPAYQSEELRYVLK 146 (596)
T ss_pred EEEEeeccchhhHHHHHHHHHHHHhhHHhhc-CCCCCEEEEecCChHHHHHHHHHHHHhceEEeccCcccccHHHHHHHh
Confidence 5777888877666533345555555556666 466766566666666777788999999998888888877888888999
Q ss_pred HCCCEEEEECC
Q 025113 113 ALGAEIILADS 123 (257)
Q Consensus 113 ~~Ga~v~~~~~ 123 (257)
..|.++...+.
T Consensus 147 k~~~k~l~~p~ 157 (596)
T KOG1177|consen 147 KVGCKALFAPP 157 (596)
T ss_pred hcCeEEEEccc
Confidence 99999999985
No 357
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=51.78 E-value=50 Score=24.37 Aligned_cols=44 Identities=23% Similarity=0.394 Sum_probs=32.5
Q ss_pred HHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 025113 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSES 212 (257)
Q Consensus 163 ~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~ 212 (257)
.+.++.++++ ...||+..-+|.++- .+.+..|...|+++.+...
T Consensus 7 aa~~~A~~~~--ak~Ivv~T~sG~ta~----~isk~RP~~pIiavt~~~~ 50 (117)
T PF02887_consen 7 AAVELAEDLN--AKAIVVFTESGRTAR----LISKYRPKVPIIAVTPNES 50 (117)
T ss_dssp HHHHHHHHHT--ESEEEEE-SSSHHHH----HHHHT-TSSEEEEEESSHH
T ss_pred HHHHHHHhcC--CCEEEEECCCchHHH----HHHhhCCCCeEEEEcCcHH
Confidence 4567777773 789999999998754 4455779999999988775
No 358
>PRK06138 short chain dehydrogenase; Provisional
Probab=51.71 E-value=1.3e+02 Score=24.62 Aligned_cols=71 Identities=8% Similarity=0.117 Sum_probs=42.6
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK 140 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~ 140 (257)
.+.+|+..+|-.|.+++......|.+++++...... ......++ .|.++..+..+- +.++..+..++..++
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~i~~~ 78 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AGGRAFARQGDVGSAEAVEALVDFVAAR 78 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 366889999999999999888889887666543211 22233333 577666655432 333444444444443
No 359
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.65 E-value=1.3e+02 Score=24.50 Aligned_cols=70 Identities=19% Similarity=0.256 Sum_probs=42.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHH
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADSAL-RFEEILEKGEEILK 139 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~--~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~ 139 (257)
+.+|+..+|.-|.+++......|.+++++...+.. ......+...+.++..+..+- +.++..+..++..+
T Consensus 7 ~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (247)
T PRK05565 7 VAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVE 79 (247)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 56888899999999998888889988776333222 222334444566776665432 23333333444444
No 360
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=51.64 E-value=1.1e+02 Score=27.18 Aligned_cols=82 Identities=15% Similarity=0.123 Sum_probs=43.3
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHH-HhCCCeEEeCC
Q 025113 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEIL-KKTPDGYLLRQ 149 (257)
Q Consensus 71 ~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 149 (257)
.|+.++++..+..++..+- .+-.-.|++|.-.-..-....+.+|++++.++-+.++.-..+..++.. +.....+++..
T Consensus 83 ~I~~t~G~~~~i~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~~ 161 (356)
T PRK04870 83 DVLLGNGSDELIQLLALAC-AKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAEHRPALVFLAY 161 (356)
T ss_pred cEEEcCCHHHHHHHHHHHh-cCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhcCCCCEEEEcC
Confidence 3666665566655544322 233345666654445556678889999999875322211112222222 22346677754
Q ss_pred CCCC
Q 025113 150 FENP 153 (257)
Q Consensus 150 ~~~~ 153 (257)
..||
T Consensus 162 p~NP 165 (356)
T PRK04870 162 PNNP 165 (356)
T ss_pred CCCC
Confidence 3444
No 361
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=51.62 E-value=95 Score=27.77 Aligned_cols=82 Identities=11% Similarity=-0.008 Sum_probs=40.8
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCC
Q 025113 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQF 150 (257)
Q Consensus 71 ~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (257)
.|+.++++..+..+...+- .+-.-.|+++.-.-..-...++.+|.+++.++.+.++.-..+..++..++....+++...
T Consensus 90 ~i~~t~G~~~~l~~~~~~~-~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p 168 (371)
T PRK05166 90 RIILGNGSEDLIAVICRAV-LRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVTPDLGFDLDALCAAVARAPRMLMFSNP 168 (371)
T ss_pred HEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHhhhcCCCEEEEeCC
Confidence 3565555566655444332 222234555544434456677889999998875322110112222222334456666433
Q ss_pred CCC
Q 025113 151 ENP 153 (257)
Q Consensus 151 ~~~ 153 (257)
.||
T Consensus 169 ~NP 171 (371)
T PRK05166 169 SNP 171 (371)
T ss_pred CCC
Confidence 443
No 362
>PRK07985 oxidoreductase; Provisional
Probab=51.60 E-value=1.3e+02 Score=25.95 Aligned_cols=73 Identities=15% Similarity=0.127 Sum_probs=44.3
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-C--HHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHhC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-S--MERRIVLRALGAEIILADSAL-RFEEILEKGEEILKKT 141 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~-~--~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~~ 141 (257)
.+.+|+..+|.-|.++|......|.++++.-.... . ....+.++..|.+++.+..+- +.++..+..++..+..
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 126 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKAL 126 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 36789999999999999999999999877543221 1 122233455677776554322 2333444444444443
No 363
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=51.52 E-value=96 Score=25.55 Aligned_cols=70 Identities=21% Similarity=0.268 Sum_probs=43.8
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHH
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIVLRALGAEIILADSAL-RFEEILEKGEEILK 139 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~--~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~ 139 (257)
+.+|+.++|.-|.++|..-...|.++++....+. .......++..+.+++.+..+. +..+..+..+++.+
T Consensus 4 ~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (248)
T PRK06947 4 VVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQS 76 (248)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHH
Confidence 4578889999999999998888988776553322 1223445666777777665432 23333344444443
No 364
>PRK09072 short chain dehydrogenase; Provisional
Probab=51.52 E-value=1.1e+02 Score=25.47 Aligned_cols=54 Identities=24% Similarity=0.197 Sum_probs=35.5
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCH-HHHHHHHHCCCEEEEECC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM-ERRIVLRALGAEIILADS 123 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~-~~~~~l~~~Ga~v~~~~~ 123 (257)
...+|++++|-.|.+++......|.+++++....... .....+ ..+.++..+..
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~ 60 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PYPGRHRWVVA 60 (263)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hcCCceEEEEc
Confidence 4678889999999999999888999887776542111 112223 24556655543
No 365
>PRK06101 short chain dehydrogenase; Provisional
Probab=51.49 E-value=1.4e+02 Score=24.64 Aligned_cols=63 Identities=19% Similarity=0.145 Sum_probs=39.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEE--EEECCCCCHHHHHHHHHH
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI--ILADSALRFEEILEKGEE 136 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v--~~~~~~~~~~~~~~~~~~ 136 (257)
..+|++.+|.-|.++|..-...|.+++++... ..+.+.+...+.++ +.++-. +.++..+..++
T Consensus 3 ~vlItGas~giG~~la~~L~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~ 67 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYAKQGWQVIACGRN---QSVLDELHTQSANIFTLAFDVT-DHPGTKAALSQ 67 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHHhCCCEEEEEECC---HHHHHHHHHhcCCCeEEEeeCC-CHHHHHHHHHh
Confidence 45889999999999999888889997776543 34445454444344 444432 34444333333
No 366
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=51.39 E-value=1.7e+02 Score=25.65 Aligned_cols=52 Identities=21% Similarity=0.279 Sum_probs=35.3
Q ss_pred CCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 025113 65 ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (257)
Q Consensus 65 ~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~ 119 (257)
+.++...++. .+|..|.+++..|+..|.+.++++. .+..+...++.+|++.+
T Consensus 173 ~~~~~~vlI~-g~g~vg~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~g~~~~ 224 (350)
T cd08240 173 LVADEPVVII-GAGGLGLMALALLKALGPANIIVVD--IDEAKLEAAKAAGADVV 224 (350)
T ss_pred CCCCCEEEEE-CCcHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHhCCcEE
Confidence 3345454444 6789999999999999986544443 34667777788887543
No 367
>PRK07904 short chain dehydrogenase; Provisional
Probab=51.36 E-value=1.5e+02 Score=24.90 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=35.5
Q ss_pred ceEEEEeCCChHHHHHHHHHHHc-CCcEEEEeCCCCC--HHHHHHHHHCCC-EEEEEC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAAR-GYNLIIVMPSTCS--MERRIVLRALGA-EIILAD 122 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~-g~~~~i~vp~~~~--~~~~~~l~~~Ga-~v~~~~ 122 (257)
...+|+..+|-.|.++|...... |.+++++.....+ ....+.++..|. ++..+.
T Consensus 9 ~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~ 66 (253)
T PRK07904 9 QTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVID 66 (253)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEE
Confidence 45688889999999999887766 4888887654332 223445555554 554443
No 368
>PRK07201 short chain dehydrogenase; Provisional
Probab=51.27 E-value=1.1e+02 Score=29.78 Aligned_cols=73 Identities=21% Similarity=0.158 Sum_probs=46.1
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHHHHhC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADSA-LRFEEILEKGEEILKKT 141 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~~~~~~~~~ 141 (257)
...+|++.+|..|.+++..-...|.+++++...... ....+.++..|.++..+..+ .+.++..+..++..++.
T Consensus 372 k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 446 (657)
T PRK07201 372 KVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEH 446 (657)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 456888999999999999888889988877654221 22234455567777665533 23344444455554444
No 369
>PLN00175 aminotransferase family protein; Provisional
Probab=51.21 E-value=2e+02 Score=26.34 Aligned_cols=82 Identities=10% Similarity=0.076 Sum_probs=43.0
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHHHHhCCCeEEeCCC
Q 025113 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA-LRFEEILEKGEEILKKTPDGYLLRQF 150 (257)
Q Consensus 72 vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (257)
|+..+++..|..++..+- ++-.-.|+++.-.-..-...++.+|++++.++-. .++.-..+..++........++++..
T Consensus 118 I~vt~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~i~i~~p 196 (413)
T PLN00175 118 VTVTSGCTEAIAATILGL-INPGDEVILFAPFYDSYEATLSMAGAKIKTVTLRPPDFAVPEDELKAAFTSKTRAILINTP 196 (413)
T ss_pred EEEeCCHHHHHHHHHHHh-CCCCCEEEEeCCCchhHHHHHHHcCCEEEEEECCcccCCCCHHHHHHhcCcCceEEEecCC
Confidence 566666677766655543 3333445555444444566778899999988742 11211112222222233355666544
Q ss_pred CCCc
Q 025113 151 ENPA 154 (257)
Q Consensus 151 ~~~~ 154 (257)
+||.
T Consensus 197 ~NPt 200 (413)
T PLN00175 197 HNPT 200 (413)
T ss_pred CCCC
Confidence 4543
No 370
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=51.18 E-value=1.5e+02 Score=24.92 Aligned_cols=51 Identities=33% Similarity=0.434 Sum_probs=37.4
Q ss_pred cCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCC
Q 025113 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGA 116 (257)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga 116 (257)
.+.+.+|...+|...+|..|.+++..++..|.+++++.+.. +.+.++.+|+
T Consensus 139 ~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~----~~~~~~~~g~ 189 (309)
T cd05289 139 LGGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA----NADFLRSLGA 189 (309)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch----hHHHHHHcCC
Confidence 34466776666666679999999999999999977765432 4555677886
No 371
>PRK07324 transaminase; Validated
Probab=51.18 E-value=1.1e+02 Score=27.55 Aligned_cols=52 Identities=12% Similarity=0.013 Sum_probs=31.1
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (257)
Q Consensus 71 ~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (257)
.|+..+++..+..++..+- ++-.-.|+++...-..-...++.+|++++.++-
T Consensus 82 ~vi~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~ 133 (373)
T PRK07324 82 NILQTNGATGANFLVLYAL-VEPGDHVISVYPTYQQLYDIPESLGAEVDYWQL 133 (373)
T ss_pred hEEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCchhHHHHHHHcCCEEEEEec
Confidence 4666666666666655443 332234555543334445667889999998874
No 372
>PRK14031 glutamate dehydrogenase; Provisional
Probab=51.12 E-value=77 Score=29.70 Aligned_cols=53 Identities=11% Similarity=-0.065 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 025113 49 DRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (257)
Q Consensus 49 ~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~ 101 (257)
-||..+.+..+.+...+.....+|+....||-|..+|.....+|-+++++-+.
T Consensus 208 g~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~ 260 (444)
T PRK14031 208 GYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDS 260 (444)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 35777777776654433444567888999999999999999999999988873
No 373
>PRK05693 short chain dehydrogenase; Provisional
Probab=51.07 E-value=1.5e+02 Score=24.96 Aligned_cols=67 Identities=24% Similarity=0.188 Sum_probs=44.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHh
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKK 140 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~ 140 (257)
..+|++.+|-.|.+++......|.+++++... ..+.+.+...+.+.+.++-. +.++..+..++..++
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~~~~~ 69 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARK---AEDVEALAAAGFTAVQLDVN-DGAALARLAEELEAE 69 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHCCCeEEEeeCC-CHHHHHHHHHHHHHh
Confidence 45788899999999999988899988776543 33445555567777666642 334444444444343
No 374
>PTZ00377 alanine aminotransferase; Provisional
Probab=50.90 E-value=2.1e+02 Score=26.70 Aligned_cols=54 Identities=9% Similarity=0.057 Sum_probs=34.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (257)
..|+..+++.++..++..+-..+-.-.|++|.-.-+.-...++.+|++++.++-
T Consensus 139 ~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~y~~~~~~~g~~~v~v~~ 192 (481)
T PTZ00377 139 SDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYSAAITLLGGKQVPYYL 192 (481)
T ss_pred hhEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchhHHHHHHHcCCEEEEEEe
Confidence 457777777777776665442122234666654555566777889999998864
No 375
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=50.82 E-value=1.7e+02 Score=26.84 Aligned_cols=130 Identities=18% Similarity=0.141 Sum_probs=69.7
Q ss_pred CCChhhHHHHHHHHHHH----HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 025113 44 CSSVKDRIAYSMIKDAE----DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (257)
Q Consensus 44 tGS~K~R~a~~~~~~a~----~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~ 119 (257)
.|.+..-.+.+.+.... ..|.--. ..+|-.-..||-|.++|..++.+|++++.+=|..... +...
T Consensus 88 pg~na~aVAE~~~~~lL~l~r~~g~~L~-gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~---------~~~~- 156 (378)
T PRK15438 88 PGCNAIAVVEYVFSSLLMLAERDGFSLH-DRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR---------GDEG- 156 (378)
T ss_pred CCcCchHHHHHHHHHHHHHhccCCCCcC-CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc---------cccc-
Confidence 34455555555554332 2232112 3457777889999999999999999998875532110 1110
Q ss_pred EECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHHhhhCCCCCEEEEecCchhHH--HHHHHHHHh
Q 025113 120 LADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTV--TGAGRFLKE 197 (257)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~pvG~Gg~~--aGi~~~~k~ 197 (257)
.. .++ +++.++. +...++---++.....-+.-+..+.+.++ +++.+++-+|-|+.+ .++..++++
T Consensus 157 --~~-~~L-------~ell~~s-DiI~lh~PLt~~g~~~T~~li~~~~l~~m--k~gailIN~aRG~vVDe~AL~~aL~~ 223 (378)
T PRK15438 157 --DF-RSL-------DELVQEA-DILTFHTPLFKDGPYKTLHLADEKLIRSL--KPGAILINACRGAVVDNTALLTCLNE 223 (378)
T ss_pred --cc-CCH-------HHHHhhC-CEEEEeCCCCCCcccccccccCHHHHhcC--CCCcEEEECCCchhcCHHHHHHHHHh
Confidence 00 112 2333333 44443221111100011334556777887 478999999999875 345555554
No 376
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=50.82 E-value=1.4e+02 Score=24.69 Aligned_cols=32 Identities=16% Similarity=0.150 Sum_probs=26.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~ 101 (257)
+.+|+..+|.-|.++|......|.+++++-..
T Consensus 4 ~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~ 35 (259)
T PRK12384 4 VAVVIGGGQTLGAFLCHGLAEEGYRVAVADIN 35 (259)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 56889999999999999988889887776543
No 377
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=50.77 E-value=1.1e+02 Score=25.63 Aligned_cols=72 Identities=13% Similarity=0.108 Sum_probs=43.5
Q ss_pred ceEEEEeCC--ChHHHHHHHHHHHcCCcEEEEeC----CCC----CH----HHHHHHHHCCCEEEEECCCC-CHHHHHHH
Q 025113 69 KTTLIEVTS--GNTGVGLAFIAAARGYNLIIVMP----STC----SM----ERRIVLRALGAEIILADSAL-RFEEILEK 133 (257)
Q Consensus 69 ~~~vv~~ss--GN~~~alA~~a~~~g~~~~i~vp----~~~----~~----~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~ 133 (257)
...+|+..+ +.-|.++|......|.++++... .+. .. ...+.++..|.+++.+..+- +.++..+.
T Consensus 7 k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i~~~ 86 (256)
T PRK12859 7 KVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAPKEL 86 (256)
T ss_pred cEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHH
Confidence 356777766 48999999998899998777531 111 11 22345667788887765432 23344444
Q ss_pred HHHHHHh
Q 025113 134 GEEILKK 140 (257)
Q Consensus 134 ~~~~~~~ 140 (257)
..+..++
T Consensus 87 ~~~~~~~ 93 (256)
T PRK12859 87 LNKVTEQ 93 (256)
T ss_pred HHHHHHH
Confidence 4555444
No 378
>PRK05957 aspartate aminotransferase; Provisional
Probab=50.75 E-value=1.1e+02 Score=27.66 Aligned_cols=53 Identities=13% Similarity=0.199 Sum_probs=29.1
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCC
Q 025113 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (257)
Q Consensus 71 ~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~ 124 (257)
.|+..++++.+..++..+- +.-.-.|+++...-..-...++..|++++.++.+
T Consensus 91 ~i~~t~G~~~~l~~~~~~~-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~ 143 (389)
T PRK05957 91 AIVVTAGSNMAFMNAILAI-TDPGDEIILNTPYYFNHEMAITMAGCQPILVPTD 143 (389)
T ss_pred eEEEeCChHHHHHHHHHHh-cCCCCEEEEeCCCCcCHHHHHHhcCCEEEEeecC
Confidence 4676777777765554332 2222334444322122233456789999988754
No 379
>PRK13243 glyoxylate reductase; Reviewed
Probab=50.74 E-value=1.3e+02 Score=26.91 Aligned_cols=116 Identities=24% Similarity=0.210 Sum_probs=67.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQ 149 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (257)
++|..-..|+-|.++|-.++.+|.+++++-|.. ... ....+|... . ++++ +.++. +...+.-
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~-~~~---~~~~~~~~~---~---~l~e-------ll~~a-DiV~l~l 212 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTR-KPE---AEKELGAEY---R---PLEE-------LLRES-DFVSLHV 212 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC-Chh---hHHHcCCEe---c---CHHH-------HHhhC-CEEEEeC
Confidence 457777889999999999999999887665532 221 123345421 1 2332 23333 5554443
Q ss_pred CCCCcchHhhHhhHHHHHHhhhCCCCCEEEEecCchhHHHH--HHHHHHhcCCCcEEEEEeCCC
Q 025113 150 FENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTG--AGRFLKENNPDIKVYGVEPSE 211 (257)
Q Consensus 150 ~~~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~pvG~Gg~~aG--i~~~~k~~~~~~~vigv~~~~ 211 (257)
-.++. -...+..|.++.+ +++.+++-+|.|+..-- +..++++ .++.=.+.+...
T Consensus 213 P~t~~----T~~~i~~~~~~~m--k~ga~lIN~aRg~~vd~~aL~~aL~~--g~i~gAaLDV~~ 268 (333)
T PRK13243 213 PLTKE----TYHMINEERLKLM--KPTAILVNTARGKVVDTKALVKALKE--GWIAGAGLDVFE 268 (333)
T ss_pred CCChH----HhhccCHHHHhcC--CCCeEEEECcCchhcCHHHHHHHHHc--CCeEEEEeccCC
Confidence 22222 2344556777777 57899999999998643 4444443 233333444443
No 380
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=50.60 E-value=1.6e+02 Score=25.22 Aligned_cols=55 Identities=29% Similarity=0.401 Sum_probs=37.9
Q ss_pred cCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (257)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~ 120 (257)
.+.+.+|...++. .+|..|.+++..|+..|.++++..+ +..+.+.++.+|++-+.
T Consensus 155 ~~~~~~g~~vli~-g~g~~g~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~ 209 (336)
T cd08276 155 LGPLKPGDTVLVQ-GTGGVSLFALQFAKAAGARVIATSS---SDEKLERAKALGADHVI 209 (336)
T ss_pred hcCCCCCCEEEEE-CCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 3456677664554 6788999999999999998655543 34566666667775543
No 381
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=50.56 E-value=92 Score=26.00 Aligned_cols=112 Identities=15% Similarity=0.158 Sum_probs=57.7
Q ss_pred HHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC---HHHHHHHHHCCC-EEEEECCCCCH
Q 025113 52 AYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS---MERRIVLRALGA-EIILADSALRF 127 (257)
Q Consensus 52 a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~---~~~~~~l~~~Ga-~v~~~~~~~~~ 127 (257)
.-+++....+.-.++||.+ |.+-.+| .|...|..|+..| .|+.=+..+ ..=.+.++.+|- +|...-+++..
T Consensus 57 ~P~~vA~m~~~L~~~~g~~-VLEIGtG-sGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~ 131 (209)
T COG2518 57 APHMVARMLQLLELKPGDR-VLEIGTG-SGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSK 131 (209)
T ss_pred CcHHHHHHHHHhCCCCCCe-EEEECCC-chHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCccc
Confidence 4455555555556677744 6665554 4555677777777 333323222 222334677777 56655543211
Q ss_pred HHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHHhhhCCCCCEEEEecCch
Q 025113 128 EEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTG 185 (257)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~pvG~G 185 (257)
||---.|||-... .++..++=.-+++||. .---+|+|+|++
T Consensus 132 ---------------G~~~~aPyD~I~V-taaa~~vP~~Ll~QL~-~gGrlv~PvG~~ 172 (209)
T COG2518 132 ---------------GWPEEAPYDRIIV-TAAAPEVPEALLDQLK-PGGRLVIPVGSG 172 (209)
T ss_pred ---------------CCCCCCCcCEEEE-eeccCCCCHHHHHhcc-cCCEEEEEEccC
Confidence 3322234433221 1233333356688883 335788999843
No 382
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=50.53 E-value=1.5e+02 Score=24.95 Aligned_cols=56 Identities=30% Similarity=0.487 Sum_probs=38.0
Q ss_pred cCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (257)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~ 120 (257)
...+.++...++...+|..|.+++..++..|.+++++... ..+.+.++.+|++...
T Consensus 134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~ 189 (323)
T cd08241 134 RARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASS---EEKLALARALGADHVI 189 (323)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCC---HHHHHHHHHcCCceee
Confidence 4456666666666667899999999999999885554333 3455556667764443
No 383
>PRK08251 short chain dehydrogenase; Provisional
Probab=50.52 E-value=1.3e+02 Score=24.72 Aligned_cols=71 Identities=25% Similarity=0.276 Sum_probs=41.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHC--CCEEEEECCCC-CHHHHHHHHHHHHHh
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRAL--GAEIILADSAL-RFEEILEKGEEILKK 140 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~--Ga~v~~~~~~~-~~~~~~~~~~~~~~~ 140 (257)
+.+|+.++|..|.++|......|.++++....... ......+... |.++..+..+- +.++..+..++..++
T Consensus 4 ~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (248)
T PRK08251 4 KILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDE 78 (248)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 56888999999999999888889887766544221 1112222222 66776665432 233333444444433
No 384
>PRK08912 hypothetical protein; Provisional
Probab=50.19 E-value=1.9e+02 Score=25.91 Aligned_cols=52 Identities=12% Similarity=0.035 Sum_probs=33.2
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (257)
Q Consensus 71 ~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (257)
.|+..+++..+..++..+- .+-.-.|++|...-..-...++.+|++++.++.
T Consensus 89 ~i~~t~G~~~al~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~ 140 (387)
T PRK08912 89 EVMVTSGATEALAAALLAL-VEPGDEVVLFQPLYDAYLPLIRRAGGVPRLVRL 140 (387)
T ss_pred cEEEeCCcHHHHHHHHHHh-cCCCCEEEEeCCCchhhHHHHHHcCCEEEEEec
Confidence 4676777788776555543 222335666654444455677889999988774
No 385
>PRK07775 short chain dehydrogenase; Provisional
Probab=50.19 E-value=1.4e+02 Score=25.18 Aligned_cols=69 Identities=17% Similarity=0.105 Sum_probs=42.6
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHH
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADSAL-RFEEILEKGEEIL 138 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~ 138 (257)
..+|+..+|-.|.+++......|.+++++...... ......++..|.++..+..+- +.++..+..++..
T Consensus 12 ~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 82 (274)
T PRK07775 12 PALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAE 82 (274)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 56788889999999999888889987766543211 112334556688877655432 2333334444443
No 386
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=50.04 E-value=1.1e+02 Score=27.05 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=30.2
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCC
Q 025113 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (257)
Q Consensus 71 ~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~ 124 (257)
.|+.++++..+..++..+- ++-.-.|+++...-..-....+..|++++.++.+
T Consensus 78 ~i~it~G~~~~l~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 130 (351)
T PRK14807 78 NIFVGNGSDEIIHLIMLAF-INKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLK 130 (351)
T ss_pred cEEEecCHHHHHHHHHHHh-cCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecC
Confidence 4565555566555544332 3322345555433334555678899999998753
No 387
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=49.83 E-value=1.6e+02 Score=24.81 Aligned_cols=72 Identities=21% Similarity=0.128 Sum_probs=41.4
Q ss_pred ceEEEEeC--CChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH-CCC-EEEEECCCCCHHHHHHHHHHHHHhC
Q 025113 69 KTTLIEVT--SGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRA-LGA-EIILADSALRFEEILEKGEEILKKT 141 (257)
Q Consensus 69 ~~~vv~~s--sGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~-~Ga-~v~~~~~~~~~~~~~~~~~~~~~~~ 141 (257)
...+|+.. ++--|+++|......|.++++...........+.+.. .|. ..+.++- .+.++..+..++..++.
T Consensus 7 k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv-~~~~~v~~~~~~~~~~~ 82 (261)
T PRK08690 7 KKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDV-ASDDEINQVFADLGKHW 82 (261)
T ss_pred cEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCC-CCHHHHHHHHHHHHHHh
Confidence 35677773 5678899998888899988775433222334444433 343 2334443 24555555555555543
No 388
>PRK06197 short chain dehydrogenase; Provisional
Probab=49.60 E-value=1.4e+02 Score=25.73 Aligned_cols=72 Identities=13% Similarity=0.209 Sum_probs=42.3
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHC--CCEEEEECCC-CCHHHHHHHHHHHHHh
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRAL--GAEIILADSA-LRFEEILEKGEEILKK 140 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~--Ga~v~~~~~~-~~~~~~~~~~~~~~~~ 140 (257)
...+|+.++|--|.++|..-...|.+++++...... ....+.++.. +.++..+..+ .+.++..+.++++.++
T Consensus 17 k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 92 (306)
T PRK06197 17 RVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAA 92 (306)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhh
Confidence 367888899999999999888889988777654221 1112333322 4455544432 2344444445555443
No 389
>PRK08862 short chain dehydrogenase; Provisional
Probab=49.52 E-value=1.5e+02 Score=24.49 Aligned_cols=75 Identities=17% Similarity=0.116 Sum_probs=42.4
Q ss_pred HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHHhhhCCCCCEEEEecCc
Q 025113 105 MERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGT 184 (257)
Q Consensus 105 ~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~pvG~ 184 (257)
....+.+...|++|+.+.++ -+...+..+++.+...... .-+.|.. + ......+..++.+++++++|.+|..+|.
T Consensus 19 ~aia~~la~~G~~V~~~~r~--~~~l~~~~~~i~~~~~~~~-~~~~D~~-~-~~~~~~~~~~~~~~~g~~iD~li~nag~ 93 (227)
T PRK08862 19 RTISCHFARLGATLILCDQD--QSALKDTYEQCSALTDNVY-SFQLKDF-S-QESIRHLFDAIEQQFNRAPDVLVNNWTS 93 (227)
T ss_pred HHHHHHHHHCCCEEEEEcCC--HHHHHHHHHHHHhcCCCeE-EEEccCC-C-HHHHHHHHHHHHHHhCCCCCEEEECCcc
Confidence 44566677789999998864 2322223333322221222 1122221 2 2344556677888885479999999874
No 390
>PRK09242 tropinone reductase; Provisional
Probab=49.50 E-value=1.5e+02 Score=24.66 Aligned_cols=72 Identities=18% Similarity=0.093 Sum_probs=43.2
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHC--CCEEEEECCCC-CHHHHHHHHHHHHHh
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRAL--GAEIILADSAL-RFEEILEKGEEILKK 140 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~--Ga~v~~~~~~~-~~~~~~~~~~~~~~~ 140 (257)
...+|+..+|.-|.+++......|.+++++...... ......++.. +.++..+..+- +.++..+..++..++
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDH 85 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 366888899999999999988899987776643211 1122233333 66777665432 233333444444444
No 391
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=49.45 E-value=1.4e+02 Score=26.05 Aligned_cols=52 Identities=25% Similarity=0.310 Sum_probs=32.8
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (257)
Q Consensus 72 vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (257)
++..++|..+..++..+-..+-.-.|++|...-......++..|++++.++.
T Consensus 36 ~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~ 87 (352)
T cd00616 36 AVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAILLLGATPVFVDI 87 (352)
T ss_pred EEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHcCCeEEEEec
Confidence 4445566665554444332233356777776666677777888888888764
No 392
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=49.39 E-value=2e+02 Score=25.91 Aligned_cols=78 Identities=15% Similarity=0.092 Sum_probs=41.0
Q ss_pred CCCChhhHHHHHHHHHHHHcCC--CCCCceEEEEeCCChHHHHHHHHHHHcCC---cEEEEeCCCCCHHHHHHHHHCCCE
Q 025113 43 PCSSVKDRIAYSMIKDAEDKGL--ITPGKTTLIEVTSGNTGVGLAFIAAARGY---NLIIVMPSTCSMERRIVLRALGAE 117 (257)
Q Consensus 43 ptGS~K~R~a~~~~~~a~~~g~--~~~g~~~vv~~ssGN~~~alA~~a~~~g~---~~~i~vp~~~~~~~~~~l~~~Ga~ 117 (257)
+.|.-+.|-+..-.... ..|. +.+. ..|+.++++..+..++..+- .+- .-.|++|.-.-..-...++.+|++
T Consensus 64 ~~G~~~lr~~ia~~~~~-~~g~~~~~~~-~~i~it~G~~~al~~~~~~l-~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~ 140 (396)
T PRK09147 64 TAGLPALREAIAAWLER-RYGLPALDPA-TQVLPVNGSREALFAFAQTV-IDRDGPGPLVVCPNPFYQIYEGAALLAGAE 140 (396)
T ss_pred CCCCHHHHHHHHHHHHH-HhCCCcCCcc-ceEEECCChHHHHHHHHHHH-cCCCCCCCEEEEcCCCccchHHHHHhcCCE
Confidence 35655666443322211 1132 3332 24666666677766554433 222 334555543334445567789999
Q ss_pred EEEECC
Q 025113 118 IILADS 123 (257)
Q Consensus 118 v~~~~~ 123 (257)
++.++-
T Consensus 141 ~~~vp~ 146 (396)
T PRK09147 141 PYFLNC 146 (396)
T ss_pred EEEecc
Confidence 999874
No 393
>PRK07576 short chain dehydrogenase; Provisional
Probab=49.30 E-value=1.4e+02 Score=25.12 Aligned_cols=55 Identities=18% Similarity=0.155 Sum_probs=36.8
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEECC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADS 123 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~Ga~v~~~~~ 123 (257)
.+.+|+..+|.-|.+++......|.+++++...... ....+.+...+.+++.+..
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 65 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSA 65 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEEC
Confidence 366888999999999999888889987776543221 1223345555666655543
No 394
>PRK05872 short chain dehydrogenase; Provisional
Probab=49.25 E-value=1.6e+02 Score=25.36 Aligned_cols=69 Identities=22% Similarity=0.251 Sum_probs=41.7
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHH-HHC--CCEEEE--ECCCCCHHHHHHHHHHHHHhC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVL-RAL--GAEIIL--ADSALRFEEILEKGEEILKKT 141 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l-~~~--Ga~v~~--~~~~~~~~~~~~~~~~~~~~~ 141 (257)
.+.+|+..+|.-|.++|......|.+++++-.. ..+++.+ +.+ +.+++. ++- .+.++..+..++..++.
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~l~~~~~~l~~~~~~~~~~~Dv-~d~~~v~~~~~~~~~~~ 83 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGAKLALVDLE---EAELAALAAELGGDDRVLTVVADV-TDLAAMQAAAEEAVERF 83 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhcCCCcEEEEEecC-CCHHHHHHHHHHHHHHc
Confidence 467889999999999999999999887665432 2222222 223 455655 443 23444444455554443
No 395
>PRK05717 oxidoreductase; Validated
Probab=49.10 E-value=1.5e+02 Score=24.53 Aligned_cols=71 Identities=17% Similarity=0.259 Sum_probs=42.1
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHhC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKKT 141 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~~ 141 (257)
.+.+|+..+|.-|.++|......|.+++++-... ....+..+..+.+++.+..+- +.++..+..++..++.
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR--ERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQF 82 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH--HHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 4678899999999999999888898877653321 111223344565665554322 2333333444554443
No 396
>PRK06198 short chain dehydrogenase; Provisional
Probab=49.07 E-value=1.5e+02 Score=24.52 Aligned_cols=72 Identities=19% Similarity=0.224 Sum_probs=43.1
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK 140 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~--~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~ 140 (257)
.+.+|+..+|..|..++......|.+.++++..... ......++..|.++..+..+- +.++..+..++..++
T Consensus 7 k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK06198 7 KVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEA 81 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 356888889999999999988899984444443221 222335566788876554322 233333344444433
No 397
>PRK09414 glutamate dehydrogenase; Provisional
Probab=48.90 E-value=85 Score=29.42 Aligned_cols=52 Identities=10% Similarity=-0.063 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 025113 49 DRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (257)
Q Consensus 49 ~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp 100 (257)
-||..+.+..+.+.........+|+....||-|..+|.....+|.+++.+.+
T Consensus 212 g~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD 263 (445)
T PRK09414 212 GYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD 263 (445)
T ss_pred cHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 4577777777766544444456789999999999999998888887777765
No 398
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.88 E-value=1.6e+02 Score=24.51 Aligned_cols=70 Identities=20% Similarity=0.189 Sum_probs=45.0
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKT 141 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~ 141 (257)
.+.+|+..+|--|.++|......|.++++..... ....+.++..+...+.++-. +.++..+..++..++.
T Consensus 8 k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~--~~~~~~l~~~~~~~~~~Dl~-~~~~~~~~~~~~~~~~ 77 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFLREGAKVAVLYNSA--ENEAKELREKGVFTIKCDVG-NRDQVKKSKEVVEKEF 77 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCc--HHHHHHHHhCCCeEEEecCC-CHHHHHHHHHHHHHHc
Confidence 3668889999999999999888998877654332 33444555556666666642 3444444455554443
No 399
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=48.77 E-value=1.8e+02 Score=26.04 Aligned_cols=60 Identities=22% Similarity=0.236 Sum_probs=39.3
Q ss_pred HcCCCCCCceEEEEeCC--ChHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHH----HHHCCCEEEEEC
Q 025113 61 DKGLITPGKTTLIEVTS--GNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIV----LRALGAEIILAD 122 (257)
Q Consensus 61 ~~g~~~~g~~~vv~~ss--GN~~~alA~~a~~~g~~~~i~vp~~~--~~~~~~~----l~~~Ga~v~~~~ 122 (257)
+.|.++. .+|+-... -|.+++++..++.+|.+++++.|+.- ++..++. .+..|.++...+
T Consensus 149 ~~g~l~g--~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (331)
T PRK02102 149 HFGPLKG--LKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITE 216 (331)
T ss_pred HhCCCCC--CEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEc
Confidence 3455542 23443333 38999999999999999999999853 3333332 344688877665
No 400
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=48.71 E-value=62 Score=29.21 Aligned_cols=52 Identities=27% Similarity=0.293 Sum_probs=34.9
Q ss_pred CCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (257)
Q Consensus 66 ~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~ 120 (257)
.+|.+.+| ...|..|.+++..|+.+|.+++++.+. +..+.+.++.+|++...
T Consensus 177 ~~g~~VlV-~G~G~vG~~avq~Ak~~Ga~Vi~~~~~--~~~~~~~a~~lGa~~~i 228 (375)
T PLN02178 177 ESGKRLGV-NGLGGLGHIAVKIGKAFGLRVTVISRS--SEKEREAIDRLGADSFL 228 (375)
T ss_pred CCCCEEEE-EcccHHHHHHHHHHHHcCCeEEEEeCC--hHHhHHHHHhCCCcEEE
Confidence 35655444 456899999999999999875554332 23345666788996544
No 401
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=48.59 E-value=1.2e+02 Score=27.48 Aligned_cols=89 Identities=18% Similarity=0.144 Sum_probs=41.2
Q ss_pred CcEEEEeCCCCCHHHHHHHHHCCC-EEEEECCCCCHH-HHHHHHHHHHHhCC-CeEEeCCC-CCCcchHhhHhhHHHHHH
Q 025113 93 YNLIIVMPSTCSMERRIVLRALGA-EIILADSALRFE-EILEKGEEILKKTP-DGYLLRQF-ENPANPKIHYETTGPEIW 168 (257)
Q Consensus 93 ~~~~i~vp~~~~~~~~~~l~~~Ga-~v~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~g~~t~~~Ei~ 168 (257)
.+..|+.-.+.-...-..++.+|. ++.++.+....+ ...+...+..++.+ .....+.. .||.. ....++.
T Consensus 5 ~p~~i~~G~g~l~~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~------~~v~~~~ 78 (377)
T cd08176 5 LPPTNLFGAGAIKEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTI------TNVKDGL 78 (377)
T ss_pred CCCeEEECcCHHHHHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCH------HHHHHHH
Confidence 455666655544444556677774 566665422122 23444444444432 12222221 13332 1123333
Q ss_pred hhhC-CCCCEEEEecCchhHH
Q 025113 169 QDSG-GKVDAFISGIGTGGTV 188 (257)
Q Consensus 169 ~ql~-~~~d~iv~pvG~Gg~~ 188 (257)
++.. .++|. |+.+|+|+.+
T Consensus 79 ~~~~~~~~D~-IIavGGGS~i 98 (377)
T cd08176 79 AVFKKEGCDF-IISIGGGSPH 98 (377)
T ss_pred HHHHhcCCCE-EEEeCCcHHH
Confidence 3331 24665 6788888753
No 402
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=48.56 E-value=1.7e+02 Score=24.82 Aligned_cols=51 Identities=31% Similarity=0.372 Sum_probs=38.4
Q ss_pred CCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (257)
Q Consensus 67 ~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~ 120 (257)
+|...++...+|..|.+++..|+.+|.+++...+ +..+...++.+|+.-..
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~ 182 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVG---SPARAEGLRELGAAEVV 182 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEE
Confidence 4667677777799999999999999998655533 35677888889986433
No 403
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=48.55 E-value=1.6e+02 Score=25.70 Aligned_cols=53 Identities=25% Similarity=0.231 Sum_probs=36.9
Q ss_pred CCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 025113 65 ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (257)
Q Consensus 65 ~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~ 121 (257)
+.+|.+.+|. ..|..|.+++..|+.+|.+++++.+. ..+.+.++.+|++-+..
T Consensus 167 ~~~g~~vlV~-g~g~vG~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~~vi~ 219 (337)
T cd05283 167 VGPGKRVGVV-GIGGLGHLAVKFAKALGAEVTAFSRS---PSKKEDALKLGADEFIA 219 (337)
T ss_pred CCCCCEEEEE-CCcHHHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHcCCcEEec
Confidence 5666666664 47899999999999999976555333 34566667788765443
No 404
>PRK07063 short chain dehydrogenase; Provisional
Probab=48.38 E-value=1.6e+02 Score=24.48 Aligned_cols=73 Identities=11% Similarity=0.104 Sum_probs=43.0
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHH--CCCEEEEECCC-CCHHHHHHHHHHHHHhC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRA--LGAEIILADSA-LRFEEILEKGEEILKKT 141 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~-~~~~~~~l~~--~Ga~v~~~~~~-~~~~~~~~~~~~~~~~~ 141 (257)
.+.+|+.++|--|.++|..-...|.+++++..... .....+.++. .+.++..+..+ .+.++..+..++..++.
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 36688899999999999998889998777654321 1222333443 46666555432 22344444445444443
No 405
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=48.37 E-value=1.1e+02 Score=27.15 Aligned_cols=32 Identities=28% Similarity=0.215 Sum_probs=25.5
Q ss_pred EEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC
Q 025113 73 IEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS 104 (257)
Q Consensus 73 v~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~ 104 (257)
..+-.+|.+.++..+++.+|..++++.|+..+
T Consensus 158 ~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~ 189 (311)
T PRK14804 158 YIGVHNNVVNSLIGITAALGIHLTLVTPIAAK 189 (311)
T ss_pred EECCCCcHHHHHHHHHHHcCCEEEEECCCCcc
Confidence 34455788999999988999999999988743
No 406
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=48.16 E-value=1.6e+02 Score=24.52 Aligned_cols=70 Identities=14% Similarity=0.222 Sum_probs=42.0
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHH-HHCCCEEEEECCC-CCHHHHHHHHHHHHHhC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVL-RALGAEIILADSA-LRFEEILEKGEEILKKT 141 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l-~~~Ga~v~~~~~~-~~~~~~~~~~~~~~~~~ 141 (257)
...+|+..+|.-|.++|......|.+++++-.. ..+.+.+ +.++.++..+..+ .+.++..+..++..++.
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERS---AEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAF 78 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhc
Confidence 467889999999999999988899987665432 2233333 3345545444432 23444444455554443
No 407
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=48.06 E-value=2e+02 Score=25.44 Aligned_cols=110 Identities=13% Similarity=-0.001 Sum_probs=52.9
Q ss_pred CCCCChhhHHHHHHHHHHHHcCC-CCCCceEEEEeCCChHHHHHHHHHHHcCCc---EEEEeCCCCCHHHHHHHHHCCCE
Q 025113 42 EPCSSVKDRIAYSMIKDAEDKGL-ITPGKTTLIEVTSGNTGVGLAFIAAARGYN---LIIVMPSTCSMERRIVLRALGAE 117 (257)
Q Consensus 42 ~ptGS~K~R~a~~~~~~a~~~g~-~~~g~~~vv~~ssGN~~~alA~~a~~~g~~---~~i~vp~~~~~~~~~~l~~~Ga~ 117 (257)
.|.|.-..|.+..-... ...|. +.++ ..|+.++++..+.-++..+- ++-. -.|++|.-.-..-...++.+|++
T Consensus 34 ~~~G~~~lr~aia~~~~-~~~g~~~~~~-~~Iiit~Gs~~ai~~~~~~~-~~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~ 110 (350)
T TIGR03537 34 SALGTKALREAISGWFE-RRFGVKLDPD-AQVLPSAGSKEAIFHFPLVF-IDPEEDRRRVIFGTPGYPVYERGALFAGGE 110 (350)
T ss_pred CCCCCHHHHHHHHHHHH-HHhCCCCCCC-CcEEEcCChHHHHHHHHHHH-cCCCCCCceEEEcCCCCcchHHHHHhcCCE
Confidence 34565566644333221 11231 3332 13666665555554443322 2321 25666665545556667889999
Q ss_pred EEEECCC--CCHHHHHHHHHHHHHhCCCeEEeCCCCCCc
Q 025113 118 IILADSA--LRFEEILEKGEEILKKTPDGYLLRQFENPA 154 (257)
Q Consensus 118 v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (257)
++.++-. .++.-..+..++..++....+++....||.
T Consensus 111 ~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPt 149 (350)
T TIGR03537 111 PTAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPT 149 (350)
T ss_pred EEEcccCcccCCccCHHHHHHhhhhccEEEEEeCCCCCc
Confidence 9988742 223111122222223344667776444443
No 408
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=48.04 E-value=2.4e+02 Score=26.39 Aligned_cols=81 Identities=17% Similarity=0.220 Sum_probs=46.2
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCc-EEEEeCCCCCHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHh-CCCeEEe
Q 025113 71 TLIEVTSGNTGVGLAFIAAARGYN-LIIVMPSTCSMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK-TPDGYLL 147 (257)
Q Consensus 71 ~vv~~ssGN~~~alA~~a~~~g~~-~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~ 147 (257)
.|+..++...|.. ..++.+--+ -+|++..-+=..-+..++.+|++++.++.+. +.+ .+..++..++ .+...|+
T Consensus 157 ~IiiT~G~q~al~--l~~~~l~~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~~G~~--~e~le~~~~~~~~k~~y~ 232 (459)
T COG1167 157 QIVITSGAQQALD--LLLRLLLDPGDTVLVEDPTYPGALQALEALGARVIPVPVDEDGID--PEALEEALAQWKPKAVYV 232 (459)
T ss_pred eEEEeCCHHHHHH--HHHHHhCCCCCEEEEcCCCcHHHHHHHHHcCCcEEecCCCCCCCC--HHHHHHHHhhcCCcEEEE
Confidence 4666666555554 444444323 5666665566777888999999999998632 121 1122222222 3566676
Q ss_pred CC-CCCCcc
Q 025113 148 RQ-FENPAN 155 (257)
Q Consensus 148 ~~-~~~~~~ 155 (257)
.| +.||..
T Consensus 233 ~P~~qNPtG 241 (459)
T COG1167 233 TPTFQNPTG 241 (459)
T ss_pred CCCCCCCCC
Confidence 66 455543
No 409
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=47.75 E-value=1.6e+02 Score=24.18 Aligned_cols=54 Identities=20% Similarity=0.240 Sum_probs=35.7
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCH-HHHHHHHHCCCEEEEECC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM-ERRIVLRALGAEIILADS 123 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~-~~~~~l~~~Ga~v~~~~~ 123 (257)
.+.+|+.++|..|.+++......|.+++++....... .....++. +.++..+..
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~ 60 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-GGRAIAVAA 60 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-CCeEEEEEC
Confidence 3668899999999999999888899977766543221 12223332 556655553
No 410
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=47.20 E-value=1.5e+02 Score=26.79 Aligned_cols=30 Identities=13% Similarity=0.068 Sum_probs=14.9
Q ss_pred cEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113 94 NLIIVMPSTCSMERRIVLRALGAEIILADS 123 (257)
Q Consensus 94 ~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (257)
+..++.-.+.-...-+.++.+|-++.++.+
T Consensus 8 p~~i~~G~g~~~~l~~~l~~~g~~~livtd 37 (366)
T PRK09423 8 PSKYVQGKGALARLGEYLKPLGKRALVIAD 37 (366)
T ss_pred CceEEECCCHHHHHHHHHHHcCCEEEEEEC
Confidence 444555444433334445556666655543
No 411
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=47.15 E-value=1.1e+02 Score=27.35 Aligned_cols=55 Identities=27% Similarity=0.378 Sum_probs=35.6
Q ss_pred CCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (257)
Q Consensus 63 g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~ 120 (257)
+.+++|.+.+| ...|..|.++...|+.+|.+++++... +..+....+.+|++.+.
T Consensus 179 ~~~~~g~~VlV-~G~G~vG~~avq~Ak~~Ga~vi~~~~~--~~~~~~~~~~~Ga~~vi 233 (360)
T PLN02586 179 GMTEPGKHLGV-AGLGGLGHVAVKIGKAFGLKVTVISSS--SNKEDEAINRLGADSFL 233 (360)
T ss_pred cccCCCCEEEE-ECCCHHHHHHHHHHHHCCCEEEEEeCC--cchhhhHHHhCCCcEEE
Confidence 34456656455 566899999999999999875554332 22334455678986544
No 412
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=47.14 E-value=41 Score=29.69 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=35.0
Q ss_pred hHhhHHHHHHhhhCCCCC-EEE-EecCchhHHHHHHHHHHhcCCCcEEEEEeCCC
Q 025113 159 HYETTGPEIWQDSGGKVD-AFI-SGIGTGGTVTGAGRFLKENNPDIKVYGVEPSE 211 (257)
Q Consensus 159 g~~t~~~Ei~~ql~~~~d-~iv-~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~ 211 (257)
|+-.+..|+++.+...+. .++ +++|+||-...+.. ...++-+|||++...
T Consensus 3 H~pVll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~---~~~~~g~VigiD~D~ 54 (296)
T PRK00050 3 HIPVLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILE---RLGPKGRLIAIDRDP 54 (296)
T ss_pred CccccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHH---hCCCCCEEEEEcCCH
Confidence 445567889888865554 444 88999998877653 334567899998765
No 413
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=47.01 E-value=1.3e+02 Score=27.11 Aligned_cols=55 Identities=27% Similarity=0.460 Sum_probs=39.4
Q ss_pred CCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 025113 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (257)
Q Consensus 63 g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~ 120 (257)
..+.+|...+|. ..|..|.++...|+..|...++.+.. ++.+.+.++.+|++-+.
T Consensus 199 ~~~~~g~~VlV~-g~g~vG~~ai~lA~~~G~~~vi~~~~--~~~~~~~~~~~g~~~~v 253 (384)
T cd08265 199 GGFRPGAYVVVY-GAGPIGLAAIALAKAAGASKVIAFEI--SEERRNLAKEMGADYVF 253 (384)
T ss_pred CCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCCEEE
Confidence 467777776666 57999999999999999854444432 33477888889985443
No 414
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=46.85 E-value=1.8e+02 Score=24.55 Aligned_cols=54 Identities=31% Similarity=0.383 Sum_probs=38.4
Q ss_pred CCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 025113 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (257)
Q Consensus 63 g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~ 119 (257)
..+.++...+|...+|..|.+++..++..|.+++++.+ +..+.+.++.+|++..
T Consensus 135 ~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 188 (323)
T cd05276 135 GGLKAGETVLIHGGASGVGTAAIQLAKALGARVIATAG---SEEKLEACRALGADVA 188 (323)
T ss_pred cCCCCCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHcCCCEE
Confidence 44566767677777888999999999999998655443 3345666677787543
No 415
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=46.83 E-value=1.9e+02 Score=25.05 Aligned_cols=55 Identities=33% Similarity=0.372 Sum_probs=36.6
Q ss_pred HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEE
Q 025113 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (257)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v 118 (257)
+...+.+|...+|.+ .|-.|.+++..|+..|.+.+++.. .++.+...++.+|++-
T Consensus 159 ~~~~~~~g~~VlV~g-~g~vg~~~~~la~~~g~~~v~~~~--~s~~~~~~~~~~g~~~ 213 (343)
T cd08235 159 RKAGIKPGDTVLVIG-AGPIGLLHAMLAKASGARKVIVSD--LNEFRLEFAKKLGADY 213 (343)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEEC--CCHHHHHHHHHhCCcE
Confidence 334577777766664 678999988899999999333332 2444555666777743
No 416
>PRK12747 short chain dehydrogenase; Provisional
Probab=46.78 E-value=1.2e+02 Score=25.09 Aligned_cols=54 Identities=19% Similarity=0.124 Sum_probs=36.8
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHCCCEEEEEC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIVLRALGAEIILAD 122 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~--~~~~~~~l~~~Ga~v~~~~ 122 (257)
.+.+|+.++|--|.++|......|.++++...... .......++..|.++..+.
T Consensus 5 k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (252)
T PRK12747 5 KVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIG 60 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEe
Confidence 46788999999999999999999988777542221 1223345555676665554
No 417
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=46.67 E-value=1.2e+02 Score=27.08 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=17.7
Q ss_pred CCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCC
Q 025113 174 KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPS 210 (257)
Q Consensus 174 ~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~ 210 (257)
++| +|+++|+|..+ =+++++.... ..++|.|-+.
T Consensus 77 ~~d-~IIavGGGs~~-D~aK~ia~~~-~~p~i~VPTt 110 (349)
T cd08550 77 EAD-VIIGVGGGKTL-DTAKAVADRL-DKPIVIVPTI 110 (349)
T ss_pred CCC-EEEEecCcHHH-HHHHHHHHHc-CCCEEEeCCc
Confidence 355 46777776543 4444443322 3456666554
No 418
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=46.62 E-value=1.7e+02 Score=24.22 Aligned_cols=67 Identities=18% Similarity=0.132 Sum_probs=40.1
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHH-HHCCCEEEEECCC-CCHHHHHHHHHHHHHh
Q 025113 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVL-RALGAEIILADSA-LRFEEILEKGEEILKK 140 (257)
Q Consensus 71 ~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l-~~~Ga~v~~~~~~-~~~~~~~~~~~~~~~~ 140 (257)
.+|+..+|..|.++|......|.+++++... +.+...+ ...+.++..+..+ .+.++..+..++..+.
T Consensus 3 vlItGasg~iG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~ 71 (248)
T PRK10538 3 VLVTGATAGFGECITRRFIQQGHKVIATGRR---QERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAE 71 (248)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHH
Confidence 4788899999999999988899987766543 2233322 2346566554432 2333333444444443
No 419
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=46.56 E-value=2.3e+02 Score=25.73 Aligned_cols=90 Identities=20% Similarity=0.256 Sum_probs=40.8
Q ss_pred CcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHH--HHHHHHHHHHhCC-CeEEeCCC-CCCcchHhhHhhHHHHHH
Q 025113 93 YNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEE--ILEKGEEILKKTP-DGYLLRQF-ENPANPKIHYETTGPEIW 168 (257)
Q Consensus 93 ~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~g~~t~~~Ei~ 168 (257)
.+..|+.-++.-...-..++.+|-++.++.+...++. ..+...+..++.+ .....+.. .||.. ....-+.+.+
T Consensus 6 ~p~~i~~G~g~~~~l~~~~~~~~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~---~~v~~~~~~~ 82 (382)
T cd08187 6 NPTKIIFGKGTESELGKELKKYGKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRL---ETVREGIELC 82 (382)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCH---HHHHHHHHHH
Confidence 3455555555444444556666777776654222321 2334444444431 11212211 13221 1112223334
Q ss_pred hhhCCCCCEEEEecCchhHH
Q 025113 169 QDSGGKVDAFISGIGTGGTV 188 (257)
Q Consensus 169 ~ql~~~~d~iv~pvG~Gg~~ 188 (257)
++. ++|. |+.+|+|+.+
T Consensus 83 ~~~--~~D~-IIaiGGGS~i 99 (382)
T cd08187 83 KEE--KVDF-ILAVGGGSVI 99 (382)
T ss_pred HHc--CCCE-EEEeCChHHH
Confidence 443 4676 6788887654
No 420
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=46.28 E-value=1.9e+02 Score=24.85 Aligned_cols=57 Identities=32% Similarity=0.429 Sum_probs=39.4
Q ss_pred cCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 025113 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (257)
Q Consensus 62 ~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~ 122 (257)
...+.++...++. .+|..|.+++..|+..|.+++++.+ ++.+.+.++.+|++-+...
T Consensus 160 ~~~~~~~~~vli~-g~g~vG~~~~~la~~~G~~V~~~~~---s~~~~~~~~~~g~~~~~~~ 216 (338)
T cd08254 160 AGEVKPGETVLVI-GLGGLGLNAVQIAKAMGAAVIAVDI---KEEKLELAKELGADEVLNS 216 (338)
T ss_pred ccCCCCCCEEEEE-CCcHHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHhCCCEEEcC
Confidence 4556777666664 5688899999999999988554433 4556677788887554443
No 421
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=46.22 E-value=2.5e+02 Score=26.18 Aligned_cols=47 Identities=9% Similarity=0.049 Sum_probs=31.2
Q ss_pred HHHHHhhhCCCCCEEEEecCc-hhHHHHHHHHHHhcCCCcEEEEEeCCC
Q 025113 164 GPEIWQDSGGKVDAFISGIGT-GGTVTGAGRFLKENNPDIKVYGVEPSE 211 (257)
Q Consensus 164 ~~Ei~~ql~~~~d~iv~pvG~-Gg~~aGi~~~~k~~~~~~~vigv~~~~ 211 (257)
..|+.++++ -|-.+|+...+ ..+++.+..+++...++.++.||=-..
T Consensus 102 ~adlAk~l~-~pVILV~~~~~~~~t~~al~~~~~~~~~~i~i~GvIlN~ 149 (449)
T TIGR00379 102 TASVAKALD-APIVLVMNCQRLSRSAAAIVLGYRSFDPGVKLKGVILNR 149 (449)
T ss_pred HHHHHHHhC-CCEEEEECCchHHHHHHHHHHHHHhhCCCCCEEEEEEEC
Confidence 458888884 56677777765 556777776676666666766664433
No 422
>PRK08068 transaminase; Reviewed
Probab=46.12 E-value=2.2e+02 Score=25.52 Aligned_cols=52 Identities=10% Similarity=-0.058 Sum_probs=31.6
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (257)
Q Consensus 71 ~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (257)
.|+..+++..+..++.. ...+-.-.|++|.-+-..-...++..|++++.++.
T Consensus 96 ~i~it~G~~~~l~~~~~-~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~ 147 (389)
T PRK08068 96 EVAILFGGKAGLVELPQ-CLMNPGDTILVPDPGYPDYLSGVALARAQFETMPL 147 (389)
T ss_pred cEEEcCCcHHHHHHHHH-HhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEeec
Confidence 35666666666655433 33343445666654444445567789999998875
No 423
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=46.04 E-value=89 Score=24.96 Aligned_cols=89 Identities=18% Similarity=0.250 Sum_probs=52.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQ 149 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (257)
+.++....|+-|.++|...+.+|.+++|+ ..+|.+..+....|=++.. .+++ +++ .+.+ +.-
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~---e~DPi~alqA~~dGf~v~~------~~~a-------~~~-adi~-vta 85 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVT---EIDPIRALQAAMDGFEVMT------LEEA-------LRD-ADIF-VTA 85 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE----SSHHHHHHHHHTT-EEE-------HHHH-------TTT--SEE-EE-
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEE---ECChHHHHHhhhcCcEecC------HHHH-------Hhh-CCEE-EEC
Confidence 45888999999999999999999888774 3466676676777777653 2221 122 2333 322
Q ss_pred CCCCcchHhhHhhHHHHHHhhhCCCCCEEEEecCch
Q 025113 150 FENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTG 185 (257)
Q Consensus 150 ~~~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~pvG~G 185 (257)
-.|. ..+-.|.++|+. -+.|++.+|.-
T Consensus 86 TG~~-------~vi~~e~~~~mk--dgail~n~Gh~ 112 (162)
T PF00670_consen 86 TGNK-------DVITGEHFRQMK--DGAILANAGHF 112 (162)
T ss_dssp SSSS-------SSB-HHHHHHS---TTEEEEESSSS
T ss_pred CCCc-------cccCHHHHHHhc--CCeEEeccCcC
Confidence 2221 223467788883 47888888863
No 424
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=45.85 E-value=1e+02 Score=28.34 Aligned_cols=56 Identities=27% Similarity=0.323 Sum_probs=39.7
Q ss_pred CCChhhHHHHHHHHHHHHcCCCCCCceEEEE--eCCChHHHHHHHHHHHcC--CcEEEEeCC
Q 025113 44 CSSVKDRIAYSMIKDAEDKGLITPGKTTLIE--VTSGNTGVGLAFIAAARG--YNLIIVMPS 101 (257)
Q Consensus 44 tGS~K~R~a~~~~~~a~~~g~~~~g~~~vv~--~ssGN~~~alA~~a~~~g--~~~~i~vp~ 101 (257)
-|-.|.|-|..++-+....|++... .-++. +++|-++.|+|. |+.+| .|++.....
T Consensus 27 VGQ~~AReAagiiv~mIk~~K~aGr-~iLiaGppGtGKTAlA~~i-a~eLG~~~PF~~isgS 86 (398)
T PF06068_consen 27 VGQEKAREAAGIIVDMIKEGKIAGR-AILIAGPPGTGKTALAMAI-AKELGEDVPFVSISGS 86 (398)
T ss_dssp ES-HHHHHHHHHHHHHHHTT--TT--EEEEEE-TTSSHHHHHHHH-HHHCTTTS-EEEEEGG
T ss_pred cChHHHHHHHHHHHHHHhcccccCc-EEEEeCCCCCCchHHHHHH-HHHhCCCCCeeEcccc
Confidence 5678999999999999999987643 32333 377899988877 67777 888888764
No 425
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=45.75 E-value=1.5e+02 Score=23.59 Aligned_cols=71 Identities=15% Similarity=0.157 Sum_probs=40.8
Q ss_pred HHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHHhhhCCCCCEEEEecCchh
Q 025113 110 VLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGG 186 (257)
Q Consensus 110 ~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~pvG~Gg 186 (257)
.+..+|.+++.-+. .+..++++.+.+.......++++-+.|.|.... ..-.++++++. ..+.+++|.-.||
T Consensus 60 ~~~~~~v~~i~~~~-~G~~~si~~al~~~~~~~~~vlv~~~D~P~l~~----~~i~~l~~~~~-~~~~vi~p~~~GG 130 (195)
T TIGR03552 60 AARNLGAPVLRDPG-PGLNNALNAALAEAREPGGAVLILMADLPLLTP----RELKRLLAAAT-EGDVVIAPDRGGG 130 (195)
T ss_pred HHHhcCCEEEecCC-CCHHHHHHHHHHHhhccCCeEEEEeCCCCCCCH----HHHHHHHHhcc-cCCEEEEecCCCC
Confidence 34456776654433 256667766655443322467788888887522 22234455542 4578888886663
No 426
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=45.71 E-value=1.1e+02 Score=27.31 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=17.8
Q ss_pred CCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCC
Q 025113 174 KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPS 210 (257)
Q Consensus 174 ~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~ 210 (257)
++|. |+++|+|+.+ =+++++... ....+|.|-+.
T Consensus 77 ~~D~-IIavGGGS~i-D~aK~ia~~-~~~P~iaIPTT 110 (351)
T cd08170 77 GADV-VIGIGGGKTL-DTAKAVADY-LGAPVVIVPTI 110 (351)
T ss_pred CCCE-EEEecCchhh-HHHHHHHHH-cCCCEEEeCCc
Confidence 4554 6777777644 334444332 23456666543
No 427
>PLN02928 oxidoreductase family protein
Probab=45.62 E-value=1.2e+02 Score=27.36 Aligned_cols=128 Identities=17% Similarity=0.076 Sum_probs=69.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE-ECCCCCHHHHHHHHHHHHHhCCCeEEeC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL-ADSALRFEEILEKGEEILKKTPDGYLLR 148 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (257)
+++..-..|+-|+++|..++.+|.+++++-|...... ...+...-..+.. +.....+ ....++.++. +...+.
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~L~ell~~a-DiVvl~ 233 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEP-EDGLLIPNGDVDDLVDEKGGH----EDIYEFAGEA-DIVVLC 233 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhh-hhhhccccccccccccccCcc----cCHHHHHhhC-CEEEEC
Confidence 4677788899999999999999999888765422111 1100000000000 0000001 1223344443 555444
Q ss_pred CCCCCcchHhhHhhHHHHHHhhhCCCCCEEEEecCchhHH--HHHHHHHHhcCCCcEEEEEeCCC
Q 025113 149 QFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTV--TGAGRFLKENNPDIKVYGVEPSE 211 (257)
Q Consensus 149 ~~~~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~pvG~Gg~~--aGi~~~~k~~~~~~~vigv~~~~ 211 (257)
--.++. -...+..|.++++ ++..+++-+|-|+.+ .++..+++. .++.-.+.+...
T Consensus 234 lPlt~~----T~~li~~~~l~~M--k~ga~lINvaRG~lVde~AL~~AL~~--g~i~gAaLDV~~ 290 (347)
T PLN02928 234 CTLTKE----TAGIVNDEFLSSM--KKGALLVNIARGGLLDYDAVLAALES--GHLGGLAIDVAW 290 (347)
T ss_pred CCCChH----hhcccCHHHHhcC--CCCeEEEECCCccccCHHHHHHHHHc--CCeeEEEEccCC
Confidence 322222 2345567888888 578999999999876 445555553 233334454443
No 428
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=45.49 E-value=1.8e+02 Score=25.78 Aligned_cols=116 Identities=15% Similarity=0.076 Sum_probs=67.6
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQ 149 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (257)
.+|..-..|+-|.++|-.++.+|++++++-+..... -|.+.. .... ...++.++. +...+.-
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~--------~~~~~~--~~~~-------~l~e~l~~a-Dvvv~~l 198 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSW--------PGVQSF--AGRE-------ELSAFLSQT-RVLINLL 198 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCC--------CCceee--cccc-------cHHHHHhcC-CEEEECC
Confidence 457777899999999999999999998876532111 021111 1111 122333433 4444432
Q ss_pred CCCCcchHhhHhhHHHHHHhhhCCCCCEEEEecCchhHHH--HHHHHHHhcCCCcEEEEEeCCC
Q 025113 150 FENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVT--GAGRFLKENNPDIKVYGVEPSE 211 (257)
Q Consensus 150 ~~~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~pvG~Gg~~a--Gi~~~~k~~~~~~~vigv~~~~ 211 (257)
-.++. -...+..+.+.++ +++.+++-+|-|+..- .+..++++. +..-.+.+...
T Consensus 199 Plt~~----T~~li~~~~l~~m--k~ga~lIN~aRG~vVde~aL~~aL~~g--~i~gaalDVf~ 254 (312)
T PRK15469 199 PNTPE----TVGIINQQLLEQL--PDGAYLLNLARGVHVVEDDLLAALDSG--KVKGAMLDVFS 254 (312)
T ss_pred CCCHH----HHHHhHHHHHhcC--CCCcEEEECCCccccCHHHHHHHHhcC--CeeeEEecCCC
Confidence 22222 2344567788887 4689999999998763 455555543 33434455443
No 429
>PRK07326 short chain dehydrogenase; Provisional
Probab=45.44 E-value=1.7e+02 Score=23.84 Aligned_cols=32 Identities=31% Similarity=0.365 Sum_probs=26.9
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp 100 (257)
...+|++.+|..|.+++......|.+++++..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r 38 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITAR 38 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeC
Confidence 35688889999999999998888999777754
No 430
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=45.10 E-value=80 Score=22.28 Aligned_cols=43 Identities=26% Similarity=0.298 Sum_probs=27.8
Q ss_pred CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccc
Q 025113 173 GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVL 215 (257)
Q Consensus 173 ~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~ 215 (257)
...|.+|.-...|...=.++-.++.+..++-|+.|+..++-.+
T Consensus 10 ~~~d~~I~i~A~GivvR~iap~l~dK~~DPaVvvvde~g~~vI 52 (84)
T PF11760_consen 10 RRYDAIIFIMAAGIVVRAIAPLLKDKDTDPAVVVVDEDGRFVI 52 (84)
T ss_dssp CC-SEEEEES-HHHHHHHHHHH---TTT--EEEEE-TT--EEE
T ss_pred cCCCeEEEEeCcHHHHHHhChhhcccCCCCCEEEEeCCCCEEE
Confidence 3578888888889999899999998889999999999997543
No 431
>PRK06953 short chain dehydrogenase; Provisional
Probab=45.04 E-value=1.7e+02 Score=23.75 Aligned_cols=51 Identities=29% Similarity=0.299 Sum_probs=36.8
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (257)
+.+|+..+|.-|.+++-.-...|.+++++... ..+.+.++..+.+.+.++-
T Consensus 3 ~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~---~~~~~~~~~~~~~~~~~D~ 53 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYRADGWRVIATARD---AAALAALQALGAEALALDV 53 (222)
T ss_pred eEEEEcCCCchhHHHHHHHHhCCCEEEEEECC---HHHHHHHHhccceEEEecC
Confidence 45788899999999998877889987776543 2344455556777666664
No 432
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=44.95 E-value=1.8e+02 Score=24.11 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=41.4
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHh
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKK 140 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~~~~~~~ 140 (257)
...+|+.++|--|.++|......|.+++++..... ...+..+..+.++..+..+- +.++..+..+++.++
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADIKPA--RARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVER 77 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHH--HHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 36788999999999999998889998777654321 11222233455555544321 233444444444443
No 433
>PLN02253 xanthoxin dehydrogenase
Probab=44.91 E-value=1.5e+02 Score=25.09 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=26.9
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp 100 (257)
.+.+|+..+|.-|.++|......|.+++++-.
T Consensus 19 k~~lItGas~gIG~~la~~l~~~G~~v~~~~~ 50 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKHGAKVCIVDL 50 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 36788999999999999998889998777644
No 434
>PRK07069 short chain dehydrogenase; Validated
Probab=44.90 E-value=1.7e+02 Score=23.93 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=24.7
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 025113 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (257)
Q Consensus 71 ~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~ 101 (257)
.+|+..+|.-|.+++..-...|.+++++...
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~ 32 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQGAKVFLTDIN 32 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 3688888999999998877788887776654
No 435
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=44.82 E-value=1.6e+02 Score=25.04 Aligned_cols=68 Identities=16% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHHhhhCCCCCEEEEecC
Q 025113 109 IVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIG 183 (257)
Q Consensus 109 ~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~pvG 183 (257)
+.+...|++|+.+... +...+.++++.++. +.....+.|-.. ......+..++.++. +++|.+|..+|
T Consensus 30 ~~la~~G~~V~l~~r~---~~~~~~~~~l~~~~-~~~~~~~~Dl~~--~~~v~~~~~~~~~~~-g~iD~lv~nAG 97 (272)
T PRK08159 30 KACRAAGAELAFTYQG---DALKKRVEPLAAEL-GAFVAGHCDVTD--EASIDAVFETLEKKW-GKLDFVVHAIG 97 (272)
T ss_pred HHHHHCCCEEEEEcCc---hHHHHHHHHHHHhc-CCceEEecCCCC--HHHHHHHHHHHHHhc-CCCcEEEECCc
No 436
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=44.76 E-value=1.6e+02 Score=26.86 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=31.0
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (257)
Q Consensus 71 ~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (257)
.|+..+++..+..++..+- .+-.-.|++|.-+-..-...++.+|++++.++.
T Consensus 106 ~i~it~G~~~al~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~ 157 (412)
T PTZ00433 106 NVVLCSGVSHAILMALTAL-CDEGDNILVPAPGFPHYETVCKAYGIEMRFYNC 157 (412)
T ss_pred hEEEeCChHHHHHHHHHHh-cCCCCEEEEccCCcccHHHHHHHcCCEEEEEec
Confidence 4666666677766655443 222234555543333345567889999988874
No 437
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=44.76 E-value=1.9e+02 Score=30.22 Aligned_cols=32 Identities=16% Similarity=0.132 Sum_probs=28.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~ 101 (257)
..|+.-.+|-.|++.|+..++.|.+++||=..
T Consensus 431 ~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~ 462 (1006)
T PRK12775 431 GKVAICGSGPAGLAAAADLVKYGVDVTVYEAL 462 (1006)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence 46888899999999999999999999998543
No 438
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=44.75 E-value=1.9e+02 Score=25.94 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=14.9
Q ss_pred cEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113 94 NLIIVMPSTCSMERRIVLRALGAEIILADS 123 (257)
Q Consensus 94 ~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (257)
+..++.-.+.-...-+.++.+|-++.++.+
T Consensus 4 p~~i~~G~g~l~~l~~~~~~~g~r~lvVt~ 33 (357)
T cd08181 4 PTKVYFGENCVEKHGEELAALGKRALIVTG 33 (357)
T ss_pred CCeEEECCCHHHHHHHHHHHcCCEEEEEeC
Confidence 334444444333333445566666666654
No 439
>CHL00194 ycf39 Ycf39; Provisional
Probab=44.70 E-value=94 Score=27.10 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=26.5
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 025113 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (257)
Q Consensus 71 ~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~ 101 (257)
.+|++.+|..|..++-.....|.++++++..
T Consensus 3 IlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 3 LLVIGATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred EEEECCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 4788899999999998888889998888854
No 440
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=44.47 E-value=2e+02 Score=27.56 Aligned_cols=104 Identities=28% Similarity=0.306 Sum_probs=65.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQ 149 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (257)
++|..-..|+-|+++|..++.+|.+++.+=|.. +..+ ...+|.+.. + +++ +.++. +...+.-
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~-~~~~---~~~~g~~~~--~----l~e-------ll~~a-DiV~l~l 202 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYI-SPER---AAQLGVELV--S----LDE-------LLARA-DFITLHT 202 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC-ChhH---HHhcCCEEE--c----HHH-------HHhhC-CEEEEcc
Confidence 456677889999999999999999988876643 2222 234565432 2 332 33333 5554443
Q ss_pred CCCCcchHhhHhhHHHHHHhhhCCCCCEEEEecCchhHHH--HHHHHHHh
Q 025113 150 FENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVT--GAGRFLKE 197 (257)
Q Consensus 150 ~~~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~pvG~Gg~~a--Gi~~~~k~ 197 (257)
-.++.. ...+..+.+.++ +++.+++-+|.|+..- .+..+++.
T Consensus 203 P~t~~t----~~li~~~~l~~m--k~ga~lIN~aRG~~vde~aL~~aL~~ 246 (526)
T PRK13581 203 PLTPET----RGLIGAEELAKM--KPGVRIINCARGGIIDEAALAEALKS 246 (526)
T ss_pred CCChHh----hcCcCHHHHhcC--CCCeEEEECCCCceeCHHHHHHHHhc
Confidence 223222 233456778887 5789999999998754 45555554
No 441
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=44.24 E-value=2.5e+02 Score=25.53 Aligned_cols=14 Identities=36% Similarity=0.681 Sum_probs=10.0
Q ss_pred CCCEEEEecCchhHH
Q 025113 174 KVDAFISGIGTGGTV 188 (257)
Q Consensus 174 ~~d~iv~pvG~Gg~~ 188 (257)
++|. |+.+|+|+.+
T Consensus 79 ~~D~-IIaiGGGS~i 92 (386)
T cd08191 79 GPDV-IIGLGGGSCI 92 (386)
T ss_pred CCCE-EEEeCCchHH
Confidence 5666 7788888754
No 442
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=44.21 E-value=80 Score=26.47 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=37.6
Q ss_pred CCCCCCceEEEEeCCC--hH--HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCE
Q 025113 63 GLITPGKTTLIEVTSG--NT--GVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (257)
Q Consensus 63 g~~~~g~~~vv~~ssG--N~--~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~ 117 (257)
|-+.+|...+|.+..| -+ +..+++.+...|-++..|.-+..+...++.++.+|-+
T Consensus 16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~g~~ 74 (237)
T TIGR03877 16 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWD 74 (237)
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHhCCC
Confidence 4466777777776554 44 4444555556788888888777777778888888864
No 443
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=44.19 E-value=1.9e+02 Score=24.19 Aligned_cols=51 Identities=25% Similarity=0.236 Sum_probs=35.5
Q ss_pred HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCc-EEEEeCCCCCHHHHHHHHHCC
Q 025113 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYN-LIIVMPSTCSMERRIVLRALG 115 (257)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~-~~i~vp~~~~~~~~~~l~~~G 115 (257)
....+.+|.+.++. ..|..|.++...|+.+|.+ ++++ ..++.+.+.++.+|
T Consensus 91 ~~~~~~~g~~vlI~-g~g~vg~~~i~~a~~~g~~~vi~~---~~~~~~~~~~~~~g 142 (277)
T cd08255 91 RDAEPRLGERVAVV-GLGLVGLLAAQLAKAAGAREVVGV---DPDAARRELAEALG 142 (277)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEE---CCCHHHHHHHHHcC
Confidence 35566777665555 5688999999999999988 4443 23455666777777
No 444
>PRK07832 short chain dehydrogenase; Provisional
Probab=44.18 E-value=1.9e+02 Score=24.29 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=41.6
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEE---EECCCCCHHHHHHHHHHHHHh
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEII---LADSALRFEEILEKGEEILKK 140 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~Ga~v~---~~~~~~~~~~~~~~~~~~~~~ 140 (257)
+.+|+.++|..|.+++......|.+++++...... ....+.++..|+++. .++- .+.++..+...+..+.
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~~~~~~ 75 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDI-SDYDAVAAFAADIHAA 75 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeC-CCHHHHHHHHHHHHHh
Confidence 35788999999999999988999987766543211 122344555666542 3343 2334444444444443
No 445
>PRK10537 voltage-gated potassium channel; Provisional
Probab=44.03 E-value=2.6e+02 Score=25.70 Aligned_cols=44 Identities=14% Similarity=0.114 Sum_probs=26.8
Q ss_pred HHHhhhC-CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeC
Q 025113 166 EIWQDSG-GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEP 209 (257)
Q Consensus 166 Ei~~ql~-~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~ 209 (257)
|.+++.+ .+.+.+++....=..-.-+....|+.+|+.++++...
T Consensus 293 e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~p~~kIIa~v~ 337 (393)
T PRK10537 293 AVLKKAGAARARAILALRDNDADNAFVVLAAKEMSSDVKTVAAVN 337 (393)
T ss_pred HHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhCCCCcEEEEEC
Confidence 4444432 2456777777664433445566788888888887543
No 446
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=43.96 E-value=1.6e+02 Score=26.78 Aligned_cols=89 Identities=16% Similarity=0.213 Sum_probs=39.7
Q ss_pred CcEEEEeCCCCCHHHHHHHHHCCC-EEEEECCCCCHHH--HHHHHHHHHHhCC-CeEEeCC-CCCCcchHhhHhhHHHHH
Q 025113 93 YNLIIVMPSTCSMERRIVLRALGA-EIILADSALRFEE--ILEKGEEILKKTP-DGYLLRQ-FENPANPKIHYETTGPEI 167 (257)
Q Consensus 93 ~~~~i~vp~~~~~~~~~~l~~~Ga-~v~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~g~~t~~~Ei 167 (257)
++..|+.-.+.-...-+.++.+|. ++.++.+. ...+ ..+...+..++.+ .....+. ..||. .....-+.++
T Consensus 6 ~p~~i~fG~g~l~~l~~~l~~~g~~r~lvvt~~-~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~---~~~v~~~~~~ 81 (379)
T TIGR02638 6 LNETSYFGAGAIEDIVDEVKRRGFKKALVVTDK-DLIKFGVADKVTDLLDEAGIAYELFDEVKPNPT---ITVVKAGVAA 81 (379)
T ss_pred CCCeEEECcCHHHHHHHHHHhcCCCEEEEEcCc-chhhccchHHHHHHHHHCCCeEEEECCCCCCcC---HHHHHHHHHH
Confidence 455555555544444455666774 55555432 2222 2233333333331 1222221 12322 1112223344
Q ss_pred HhhhCCCCCEEEEecCchhHH
Q 025113 168 WQDSGGKVDAFISGIGTGGTV 188 (257)
Q Consensus 168 ~~ql~~~~d~iv~pvG~Gg~~ 188 (257)
+++. ++|. |+.+|+|+.+
T Consensus 82 ~~~~--~~D~-IiaiGGGSvi 99 (379)
T TIGR02638 82 FKAS--GADY-LIAIGGGSPI 99 (379)
T ss_pred HHhc--CCCE-EEEeCChHHH
Confidence 4443 4665 6788888765
No 447
>PRK06123 short chain dehydrogenase; Provisional
Probab=43.95 E-value=1.4e+02 Score=24.43 Aligned_cols=54 Identities=22% Similarity=0.304 Sum_probs=34.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHCCCEEEEECC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIVLRALGAEIILADS 123 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~--~~~~~~~l~~~Ga~v~~~~~ 123 (257)
..+|+..+|.-|.++|..-...|..+++...... .......++..|.+++.+..
T Consensus 4 ~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 59 (248)
T PRK06123 4 VMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAA 59 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEe
Confidence 5688899999999999887778877655432221 12223445666776655543
No 448
>PLN02623 pyruvate kinase
Probab=43.91 E-value=3.2e+02 Score=26.66 Aligned_cols=122 Identities=11% Similarity=0.076 Sum_probs=71.8
Q ss_pred HHHHHHHHcCCcEEEEe---------CC--CCCHHHHHHHHHCCCEEEEECCC---CCH-HHHHHHHHHHHHhCCCe-EE
Q 025113 83 GLAFIAAARGYNLIIVM---------PS--TCSMERRIVLRALGAEIILADSA---LRF-EEILEKGEEILKKTPDG-YL 146 (257)
Q Consensus 83 alA~~a~~~g~~~~i~v---------p~--~~~~~~~~~l~~~Ga~v~~~~~~---~~~-~~~~~~~~~~~~~~~~~-~~ 146 (257)
-+...|+..|.++.+.. |. .+....+......|++.+....+ +.| .++++...+.+++-... .+
T Consensus 367 ~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Eta~G~yPveaV~~m~~I~~~aE~~~~~ 446 (581)
T PLN02623 367 EIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTEATLPE 446 (581)
T ss_pred HHHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchhhcCcCHHHHHHHHHHHHHHHHhhccc
Confidence 35566888999998543 33 23445677777889999998853 223 34555444443322111 11
Q ss_pred ---e---CCCCCCcchHhhHhhHHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 025113 147 ---L---RQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSES 212 (257)
Q Consensus 147 ---~---~~~~~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~ 212 (257)
. ....+ ..........+.++.+.++ .. ||+.+-+|.++--+ ..+.|...|+++.+...
T Consensus 447 ~~~~~~~~~~~~-~~~~~~ia~sA~~~A~~l~--a~-Ivv~T~sG~tA~~l----Sr~RP~~pI~avT~~~~ 510 (581)
T PLN02623 447 GTTPPNLGQAFK-NHMSEMFAFHATMMANTLG--TS-IIVFTRTGFMAILL----SHYRPSGTIFAFTNEKR 510 (581)
T ss_pred chhhhhhccccC-CChHHHHHHHHHHHHHhcC--Cc-EEEECCCcHHHHHH----HhhCCCCCEEEECCCHH
Confidence 0 01011 0112234555567777774 34 89999999886554 45678899999987764
No 449
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=43.85 E-value=1.4e+02 Score=27.21 Aligned_cols=89 Identities=10% Similarity=0.202 Sum_probs=42.2
Q ss_pred CcEEEEeCCCCCHHHHHHHHHCCC-EEEEECCCCCHH--HHHHHHHHHHHhCC-CeEEeCC-CCCCcchHhhHhhHHHHH
Q 025113 93 YNLIIVMPSTCSMERRIVLRALGA-EIILADSALRFE--EILEKGEEILKKTP-DGYLLRQ-FENPANPKIHYETTGPEI 167 (257)
Q Consensus 93 ~~~~i~vp~~~~~~~~~~l~~~Ga-~v~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~g~~t~~~Ei 167 (257)
.+..|+.-.+.-...-+.++.+|. ++.++.+. .+. ...+...+..++.+ .....+. ..||.. -...-+.|+
T Consensus 8 ~p~~i~~G~g~~~~l~~~~~~~g~~~~livt~~-~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~---~~v~~~~~~ 83 (383)
T PRK09860 8 IPSVNVIGADSLTDAMNMMADYGFTRTLIVTDN-MLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTT---ENVAAGLKL 83 (383)
T ss_pred cCCeEEECcCHHHHHHHHHHhcCCCEEEEEcCc-chhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCH---HHHHHHHHH
Confidence 455555555544445556777784 55555532 221 12334444444432 1111211 123332 122234455
Q ss_pred HhhhCCCCCEEEEecCchhHH
Q 025113 168 WQDSGGKVDAFISGIGTGGTV 188 (257)
Q Consensus 168 ~~ql~~~~d~iv~pvG~Gg~~ 188 (257)
+++. ++|. |+.+|+|+.+
T Consensus 84 ~~~~--~~D~-IiaiGGGS~i 101 (383)
T PRK09860 84 LKEN--NCDS-VISLGGGSPH 101 (383)
T ss_pred HHHc--CCCE-EEEeCCchHH
Confidence 5553 5676 6788888765
No 450
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=43.76 E-value=2.4e+02 Score=25.29 Aligned_cols=56 Identities=29% Similarity=0.306 Sum_probs=38.4
Q ss_pred HcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHC-CCEEE
Q 025113 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRAL-GAEII 119 (257)
Q Consensus 61 ~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~-Ga~v~ 119 (257)
+...+.+|.+.+|. .+|-.|.+++..|+..|.+.++.+.. ++.+.+.++.+ |++++
T Consensus 178 ~~~~~~~g~~VlV~-g~G~vG~~~~~la~~~g~~~vi~~~~--~~~~~~~~~~~~~~~vi 234 (386)
T cd08283 178 ELAEVKPGDTVAVW-GCGPVGLFAARSAKLLGAERVIAIDR--VPERLEMARSHLGAETI 234 (386)
T ss_pred hhccCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCcEEE
Confidence 44566777665555 56888999999999999864444433 35677777777 65543
No 451
>PRK12831 putative oxidoreductase; Provisional
Probab=43.59 E-value=1.1e+02 Score=28.66 Aligned_cols=53 Identities=21% Similarity=0.149 Sum_probs=39.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCC---C--CHHHHHHHHHCCCEEEEEC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPST---C--SMERRIVLRALGAEIILAD 122 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~---~--~~~~~~~l~~~Ga~v~~~~ 122 (257)
..|+.-.+||.|.-+|..+.++|.+++++.... . ....++.++..|.+++...
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~~~ 339 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDLLT 339 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEecc
Confidence 468888999999999999999999998887642 2 2344456677788776443
No 452
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=43.45 E-value=1.2e+02 Score=24.93 Aligned_cols=30 Identities=13% Similarity=0.153 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHcCCcEEEEeCCCCCHHHH
Q 025113 79 NTGVGLAFIAAARGYNLIIVMPSTCSMERR 108 (257)
Q Consensus 79 N~~~alA~~a~~~g~~~~i~vp~~~~~~~~ 108 (257)
-|..-.-.++..+++.-++++|...++.|.
T Consensus 18 GHl~ia~~~~~~l~ld~vi~~ps~~~p~k~ 47 (197)
T COG1057 18 GHLLIAEEALDQLGLDKVIFLPSPVPPHKK 47 (197)
T ss_pred HHHHHHHHHHHhcCCCeEEEecCCCCCCCC
Confidence 355555667888999999999987665443
No 453
>PRK06057 short chain dehydrogenase; Provisional
Probab=43.27 E-value=1.9e+02 Score=23.94 Aligned_cols=67 Identities=13% Similarity=0.102 Sum_probs=41.7
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHH-HHHHCCCEEEEECCCCCHHHHHHHHHHHHH
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRI-VLRALGAEIILADSALRFEEILEKGEEILK 139 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~-~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~ 139 (257)
.+.+|+..+|.-|.+++......|.+++++... ..+.+ ..+.++.+++.++-. +.++..+..++..+
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~---~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~~~ 75 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEGATVVVGDID---PEAGKAAADEVGGLFVPTDVT-DEDAVNALFDTAAE 75 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHHcCCcEEEeeCC-CHHHHHHHHHHHHH
Confidence 467889999999999999988899888776542 22222 223345566666642 34444444444433
No 454
>PRK06202 hypothetical protein; Provisional
Probab=43.22 E-value=36 Score=28.31 Aligned_cols=37 Identities=16% Similarity=0.361 Sum_probs=28.3
Q ss_pred CEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 025113 176 DAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSES 212 (257)
Q Consensus 176 d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~ 212 (257)
..+=+++|+|....-++..++..+++.+++|+++...
T Consensus 63 ~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~ 99 (232)
T PRK06202 63 TLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPR 99 (232)
T ss_pred EEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHH
Confidence 3455899999877777766666677889999999663
No 455
>PRK06482 short chain dehydrogenase; Provisional
Probab=43.21 E-value=1.9e+02 Score=24.33 Aligned_cols=32 Identities=25% Similarity=0.219 Sum_probs=27.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~ 101 (257)
+.+|+..+|.-|.+++......|.+++++...
T Consensus 4 ~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~ 35 (276)
T PRK06482 4 TWFITGASSGFGRGMTERLLARGDRVAATVRR 35 (276)
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46889999999999999988889988887654
No 456
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=43.10 E-value=2.2e+02 Score=24.53 Aligned_cols=81 Identities=12% Similarity=0.178 Sum_probs=43.9
Q ss_pred EEEEeCCCCCCC-ChhhHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-----HHH
Q 025113 34 IAAKLETMEPCS-SVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-----MER 107 (257)
Q Consensus 34 l~~K~E~~~ptG-S~K~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-----~~~ 107 (257)
|.+..|...-.| .|=.|+. .+...+.++|. ...+++...++.... .-+..|+++..+ |.... ...
T Consensus 2 i~ir~Da~~~iG~GHv~Rcl-~LA~~l~~~g~----~v~f~~~~~~~~~~~---~i~~~g~~v~~~-~~~~~~~~d~~~~ 72 (279)
T TIGR03590 2 ILFRADASSEIGLGHVMRCL-TLARALHAQGA----EVAFACKPLPGDLID---LLLSAGFPVYEL-PDESSRYDDALEL 72 (279)
T ss_pred EEEEecCCccccccHHHHHH-HHHHHHHHCCC----EEEEEeCCCCHHHHH---HHHHcCCeEEEe-cCCCchhhhHHHH
Confidence 445555554444 5555653 33344445553 233444444443322 346788886664 44321 235
Q ss_pred HHHHHHCCCEEEEECC
Q 025113 108 RIVLRALGAEIILADS 123 (257)
Q Consensus 108 ~~~l~~~Ga~v~~~~~ 123 (257)
.+.++..+.++++++.
T Consensus 73 ~~~l~~~~~d~vV~D~ 88 (279)
T TIGR03590 73 INLLEEEKFDILIVDH 88 (279)
T ss_pred HHHHHhcCCCEEEEcC
Confidence 6677778889999996
No 457
>PRK08177 short chain dehydrogenase; Provisional
Probab=43.00 E-value=1.8e+02 Score=23.59 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=27.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPST 102 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~ 102 (257)
..+|+..+|.-|.++|......|.+++++-...
T Consensus 3 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~ 35 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLLERGWQVTATVRGP 35 (225)
T ss_pred EEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCC
Confidence 457889999999999999888899887776543
No 458
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=42.98 E-value=2.8e+02 Score=25.83 Aligned_cols=47 Identities=13% Similarity=0.131 Sum_probs=30.7
Q ss_pred HHHHHhhhCCCCCEEEEecCc-hhHHHHHHHHHHhcCCCcEEEEEeCCC
Q 025113 164 GPEIWQDSGGKVDAFISGIGT-GGTVTGAGRFLKENNPDIKVYGVEPSE 211 (257)
Q Consensus 164 ~~Ei~~ql~~~~d~iv~pvG~-Gg~~aGi~~~~k~~~~~~~vigv~~~~ 211 (257)
..+|.+.++ -|-.+|+.... +.+++.+..++....++.++.||=-..
T Consensus 106 ~adiA~~l~-~pviLV~~~~~~~~~~a~l~~~~~~~~~~i~i~GvI~N~ 153 (451)
T PRK01077 106 TADIAKLLG-APVVLVVDASGMAQSAAALVLGFATFDPDVRIAGVILNR 153 (451)
T ss_pred HHHHHHHhC-CCEEEEECCchHHHHHHHHHHHHHHhCCCCCEEEEEEEC
Confidence 457888884 45555665554 667778888877776666766664333
No 459
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=42.97 E-value=1.8e+02 Score=23.54 Aligned_cols=52 Identities=25% Similarity=0.235 Sum_probs=36.1
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHCCCEEEEECC
Q 025113 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADS 123 (257)
Q Consensus 72 vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~--~~~~~~l~~~Ga~v~~~~~ 123 (257)
+|+.++|-.|..++......|.+++++.....+ ......++..|+++..+..
T Consensus 2 lItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (239)
T TIGR01830 2 LVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVC 55 (239)
T ss_pred EEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEe
Confidence 678888999999998888889887776544311 2234456667877766554
No 460
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=42.93 E-value=94 Score=27.46 Aligned_cols=45 Identities=18% Similarity=0.264 Sum_probs=27.8
Q ss_pred ChHHHHHHHHHHHcCCcEEEEeCCCC-C-HHHHH----HHHHCCCEEEEEC
Q 025113 78 GNTGVGLAFIAAARGYNLIIVMPSTC-S-MERRI----VLRALGAEIILAD 122 (257)
Q Consensus 78 GN~~~alA~~a~~~g~~~~i~vp~~~-~-~~~~~----~l~~~Ga~v~~~~ 122 (257)
.|.+.+++.+++.+|+.++++.|+.. + ...++ ..+..|+++..++
T Consensus 157 ~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~ 207 (302)
T PRK14805 157 NNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTS 207 (302)
T ss_pred CccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 46667777777778888888877753 2 22221 2344577766555
No 461
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=42.90 E-value=1.2e+02 Score=24.14 Aligned_cols=66 Identities=17% Similarity=0.230 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCC--CCHHH--HHHHHHCC---CEEEEECC
Q 025113 51 IAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPST--CSMER--RIVLRALG---AEIILADS 123 (257)
Q Consensus 51 ~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~--~~~~~--~~~l~~~G---a~v~~~~~ 123 (257)
.+.-.+..+.+.|. .+...| |++-......++.+|+.-.++.... .|..| .+.++.++ .+|..++.
T Consensus 131 ~~~~~l~~L~~~Gi------~~~i~T-GD~~~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~~~~~v~~vGD 203 (215)
T PF00702_consen 131 GAKEALQELKEAGI------KVAILT-GDNESTASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQVKPGEVAMVGD 203 (215)
T ss_dssp THHHHHHHHHHTTE------EEEEEE-SSEHHHHHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHTCTGGGEEEEES
T ss_pred hhhhhhhhhhccCc------ceeeee-ccccccccccccccccccccccccccccccchhHHHHHHHHhcCCCEEEEEcc
Confidence 46777788877763 344455 4455555667889999665555555 77777 77777766 36888874
No 462
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=42.88 E-value=1.5e+02 Score=26.62 Aligned_cols=82 Identities=15% Similarity=0.054 Sum_probs=40.3
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHH-HhCCCeEEeCC
Q 025113 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEIL-KKTPDGYLLRQ 149 (257)
Q Consensus 71 ~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 149 (257)
.|+..+++..+..++..+- ..-.-.|++|.-.-..-....+.+|++++.++.+.++.-..+...+.. .+.....++..
T Consensus 105 ~I~~t~Ga~~~i~~~~~~~-~~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~~v~l~~ 183 (380)
T PLN03026 105 NILVGCGADELIDLLMRCV-LDPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPRTPDFSLDVPRIVEAVETHKPKLLFLTS 183 (380)
T ss_pred hEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHHhccCCcEEEEeC
Confidence 3555555566665554332 222234555543333344556779999998875322321122222222 33446677754
Q ss_pred CCCC
Q 025113 150 FENP 153 (257)
Q Consensus 150 ~~~~ 153 (257)
-+||
T Consensus 184 P~NP 187 (380)
T PLN03026 184 PNNP 187 (380)
T ss_pred CCCC
Confidence 3444
No 463
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=42.81 E-value=1.9e+02 Score=25.16 Aligned_cols=71 Identities=14% Similarity=0.108 Sum_probs=41.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcC-CcEEEEeCCCCCH-HHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHHHHh
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARG-YNLIIVMPSTCSM-ERRIVLRALGAEIILADSA-LRFEEILEKGEEILKK 140 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g-~~~~i~vp~~~~~-~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~~~~~~~~ 140 (257)
+.+|+..++--|.++|......| .+++++....... ...+.+...+.++..+..+ .+.++..+.+.+..+.
T Consensus 5 ~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 78 (314)
T TIGR01289 5 TVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRES 78 (314)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 56888888888999998888889 7777765432111 1122333345556554432 2344455555555443
No 464
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=42.74 E-value=1.5e+02 Score=25.88 Aligned_cols=52 Identities=19% Similarity=0.156 Sum_probs=31.2
Q ss_pred EEEeCCChHHHHHHHHHHHc-------------CCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113 72 LIEVTSGNTGVGLAFIAAAR-------------GYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (257)
Q Consensus 72 vv~~ssGN~~~alA~~a~~~-------------g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (257)
++..++|..+..++..+... +-+.+|+++........+.++.+|++++.++.
T Consensus 60 ~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~ 124 (345)
T cd06450 60 GVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPV 124 (345)
T ss_pred EEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHHHHHhcCeEEeee
Confidence 45556666666666554421 12456777765555555566667888877763
No 465
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=42.58 E-value=2.3e+02 Score=26.86 Aligned_cols=84 Identities=18% Similarity=0.163 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCceEEEE-eCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHH-HHCCCEEEEECCC
Q 025113 47 VKDRIAYSMIKDAEDKGLITPGKTTLIE-VTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVL-RALGAEIILADSA 124 (257)
Q Consensus 47 ~K~R~a~~~~~~a~~~g~~~~g~~~vv~-~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l-~~~Ga~v~~~~~~ 124 (257)
.++..+...+..|.+.+. +.||+ +.||.+++.++.+ +-..+.+++.|... ..+++ -.+|..-+.++..
T Consensus 359 ~~~aia~sAv~~A~~l~a-----kaIVv~T~SG~TA~~lS~~--RP~~pIiavT~~~~---~~r~l~l~~GV~p~~~~~~ 428 (480)
T cd00288 359 TTEAVAMSAVRAAFELGA-----KAIVVLTTSGRTARLVSKY--RPNAPIIAVTRNEQ---TARQLHLYRGVYPVLFEEP 428 (480)
T ss_pred hHHHHHHHHHHHHHhcCC-----CEEEEECCCcHHHHHHHhh--CCCCCEEEEcCCHH---HhhheeeccCcEEEEeccc
Confidence 455555555555555442 33444 4557777665543 34567777766532 22222 2347766666543
Q ss_pred -----CCHHHHHHHHHHHHHh
Q 025113 125 -----LRFEEILEKGEEILKK 140 (257)
Q Consensus 125 -----~~~~~~~~~~~~~~~~ 140 (257)
.+.++....+.+.+++
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~ 449 (480)
T cd00288 429 KPGWQEDTDARLKAAVNVAKE 449 (480)
T ss_pred ccccCCCHHHHHHHHHHHHHH
Confidence 3344555555555444
No 466
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=42.48 E-value=2.3e+02 Score=25.16 Aligned_cols=56 Identities=30% Similarity=0.292 Sum_probs=36.4
Q ss_pred CCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 025113 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (257)
Q Consensus 63 g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~ 121 (257)
+...+|.+.+|. ..|-.|.+++..|+..|.+++++... +..+...++.+|++....
T Consensus 176 ~~~~~g~~vlV~-G~G~vG~~av~~Ak~~G~~vi~~~~~--~~~~~~~~~~~Ga~~~i~ 231 (357)
T PLN02514 176 GLKQSGLRGGIL-GLGGVGHMGVKIAKAMGHHVTVISSS--DKKREEALEHLGADDYLV 231 (357)
T ss_pred ccCCCCCeEEEE-cccHHHHHHHHHHHHCCCeEEEEeCC--HHHHHHHHHhcCCcEEec
Confidence 444566565555 56889999999999999886555432 222334456799975443
No 467
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=42.39 E-value=1.9e+02 Score=23.86 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=33.7
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (257)
Q Consensus 71 ~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (257)
.++....|..|..-+......|-.++|+-|+..+ .++.+...| +|..+.+
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~--~l~~l~~~~-~i~~~~~ 60 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAGAQLRVIAEELES--ELTLLAEQG-GITWLAR 60 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCH--HHHHHHHcC-CEEEEeC
Confidence 5777888999988888888889999888876442 233333344 4555443
No 468
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=42.38 E-value=40 Score=31.85 Aligned_cols=42 Identities=26% Similarity=0.377 Sum_probs=31.5
Q ss_pred CCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113 76 TSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (257)
Q Consensus 76 ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (257)
|||-.|.++|.++...|-+++++..+...+ .-.|.+++.+..
T Consensus 280 SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~------~p~~v~~i~V~t 321 (475)
T PRK13982 280 SSGKQGFAIAAAAAAAGAEVTLISGPVDLA------DPQGVKVIHVES 321 (475)
T ss_pred CchHHHHHHHHHHHHCCCcEEEEeCCcCCC------CCCCceEEEecC
Confidence 899999999999999999999998442210 124666666664
No 469
>PRK07777 aminotransferase; Validated
Probab=42.35 E-value=2.2e+02 Score=25.54 Aligned_cols=52 Identities=8% Similarity=0.034 Sum_probs=30.9
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (257)
Q Consensus 71 ~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (257)
.|+.+++|..+..++..+. ..-.-.|+++...-..-...++..|++++.++.
T Consensus 87 ~i~~t~G~~~al~~~~~~~-~~~gd~vli~~p~y~~~~~~~~~~g~~~~~~~~ 138 (387)
T PRK07777 87 EVLVTVGATEAIAAAVLGL-VEPGDEVLLIEPYYDSYAAVIAMAGAHRVPVPL 138 (387)
T ss_pred cEEEeCCcHHHHHHHHHHh-cCCCCEEEEeCCCchhhHHHHHHCCCEEEEeec
Confidence 3676777777877666543 222223444443333345667788999988764
No 470
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=42.33 E-value=1.2e+02 Score=31.58 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=29.2
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~ 101 (257)
.+.|+.-.+|-.|.++|+..+..|.++++|=..
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 356888999999999999999999999999754
No 471
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=42.24 E-value=1.4e+02 Score=22.06 Aligned_cols=92 Identities=9% Similarity=-0.119 Sum_probs=37.3
Q ss_pred EeCCCCCHHHHHHHHHCCCEEEEECCCCC---HHHHHHHHHHHHHhCCCeEEeCCCCCCcchHhhHhhHHHHHHhhhCCC
Q 025113 98 VMPSTCSMERRIVLRALGAEIILADSALR---FEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGK 174 (257)
Q Consensus 98 ~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~~ 174 (257)
.+....++..+..+...|-+.++.-+.++ -+......++.+++. |.-|++---....+..-......++++++ ++
T Consensus 10 ~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~-Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~-~~ 87 (110)
T PF04273_consen 10 SVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEAL-GLQYVHIPVDGGAITEEDVEAFADALESL-PK 87 (110)
T ss_dssp EEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHC-T-EEEE----TTT--HHHHHHHHHHHHTT-TT
T ss_pred EECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHc-CCeEEEeecCCCCCCHHHHHHHHHHHHhC-CC
Confidence 33344567778888888888877764211 111222233445555 54443211011111111122224556666 45
Q ss_pred CCEEEEecCc-hhHHHHH
Q 025113 175 VDAFISGIGT-GGTVTGA 191 (257)
Q Consensus 175 ~d~iv~pvG~-Gg~~aGi 191 (257)
|-.+.|-.|+ .+.+..+
T Consensus 88 Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 88 PVLAHCRSGTRASALWAL 105 (110)
T ss_dssp SEEEE-SCSHHHHHHHHH
T ss_pred CEEEECCCChhHHHHHHH
Confidence 6666666665 3334333
No 472
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=42.18 E-value=1.9e+02 Score=23.58 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=37.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHCCCEEEEECC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADS 123 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~--~~~~~~l~~~Ga~v~~~~~ 123 (257)
+.+|+..+|.-|.+++......|.+++++...+.. ......++..|.++..+..
T Consensus 3 ~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (247)
T PRK09730 3 IALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQA 58 (247)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEc
Confidence 45788999999999999988899887765544322 2233445666777665554
No 473
>PRK06180 short chain dehydrogenase; Provisional
Probab=42.10 E-value=2.1e+02 Score=24.13 Aligned_cols=33 Identities=36% Similarity=0.271 Sum_probs=27.6
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~ 101 (257)
...+|+..+|--|.+++......|.+++++...
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEeCC
Confidence 356889999999999999988899998776653
No 474
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=42.08 E-value=1.1e+02 Score=25.57 Aligned_cols=68 Identities=18% Similarity=0.065 Sum_probs=41.7
Q ss_pred CEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCcccceeccccCCeEEEeChH--HHHHHHHHHHhh
Q 025113 176 DAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGLFIFISYLFRSFVLVDDG--AVVHLHNYLLLH 251 (257)
Q Consensus 176 d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~~~~~~~~~~~~~~i~~~~~~~~v~v~d~--e~~~a~~~l~~~ 251 (257)
...|+..++|.+..+++.+.+.. ..+++.+-|...+ +.....++.+..+++.++.. +..+..+.+.++
T Consensus 50 ~~~vv~~ssGN~g~alA~~a~~~--g~~~~v~~p~~~~------~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~ 119 (244)
T cd00640 50 KGVIIESTGGNTGIALAAAAARL--GLKCTIVMPEGAS------PEKVAQMRALGAEVVLVPGDFDDAIALAKELAEE 119 (244)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHc--CCCEEEEECCCCC------HHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHh
Confidence 33444455577777777766664 4688888887763 22345566677777777653 444555555554
No 475
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=41.94 E-value=2.3e+02 Score=25.06 Aligned_cols=52 Identities=27% Similarity=0.326 Sum_probs=34.0
Q ss_pred CCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCE
Q 025113 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (257)
Q Consensus 63 g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~ 117 (257)
..+.++...+|. .+|..|.+++..|+.+|.+.++++.. +..+.+.++.+|++
T Consensus 183 ~~~~~g~~VlI~-g~g~vG~~~~~lak~~G~~~vi~~~~--s~~~~~~~~~~g~~ 234 (367)
T cd08263 183 ADVRPGETVAVI-GVGGVGSSAIQLAKAFGASPIIAVDV--RDEKLAKAKELGAT 234 (367)
T ss_pred ccCCCCCEEEEE-CCcHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCc
Confidence 344556565555 57889999888999999884343322 34455666777874
No 476
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=41.77 E-value=2.6e+02 Score=25.05 Aligned_cols=50 Identities=14% Similarity=0.115 Sum_probs=32.1
Q ss_pred EEEeCCChHHHHHHHHHHHcCCc--EEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113 72 LIEVTSGNTGVGLAFIAAARGYN--LIIVMPSTCSMERRIVLRALGAEIILADS 123 (257)
Q Consensus 72 vv~~ssGN~~~alA~~a~~~g~~--~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (257)
.+..++|..|..++.. .++++ -.|++|...-......++..|++++.++.
T Consensus 47 ~v~~~sgt~al~~~l~--al~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~~~~~~ 98 (380)
T TIGR03588 47 AVAFNSATSALHIACL--ALGVGPGDRVWTTPITFVATANCALYCGAKVDFVDI 98 (380)
T ss_pred EEEEcCHHHHHHHHHH--HcCCCCCCEEEeCCcchHHHHHHHHHcCCEEEEEec
Confidence 3445566655554443 34433 46777776656666777889999998875
No 477
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=41.75 E-value=2.4e+02 Score=25.45 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=30.9
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (257)
Q Consensus 71 ~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (257)
.|+..+++..+..++..+-. .-.-.|+++...-..-...++.+|++++.++.
T Consensus 97 ~i~~t~G~~~al~~~~~~l~-~~gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~ 148 (401)
T TIGR01264 97 DVVLCSGCSHAIEMCIAALA-NAGQNILVPRPGFPLYETLAESMGIEVKLYNL 148 (401)
T ss_pred HEEECcChHHHHHHHHHHhC-CCCCEEEEeCCCChhHHHHHHHcCCEEEEeec
Confidence 46666666777665554332 22224555543334445667889999988763
No 478
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=41.73 E-value=1.8e+02 Score=25.53 Aligned_cols=51 Identities=10% Similarity=0.060 Sum_probs=25.1
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCC--CCHHHHHHHHHCCCEEEEECC
Q 025113 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPST--CSMERRIVLRALGAEIILADS 123 (257)
Q Consensus 72 vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~--~~~~~~~~l~~~Ga~v~~~~~ 123 (257)
++..++|..+..++..+- ..-.-.|+++.. .+.......+..|++++.++.
T Consensus 53 ~~~~~~~t~al~~~~~~~-~~~g~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 105 (356)
T cd06451 53 FLLSGSGTGAMEAALSNL-LEPGDKVLVGVNGVFGDRWADMAERYGADVDVVEK 105 (356)
T ss_pred EEEecCcHHHHHHHHHHh-CCCCCEEEEecCCchhHHHHHHHHHhCCCeEEeec
Confidence 444455555554444332 222223443332 222234556778888888864
No 479
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.61 E-value=1.9e+02 Score=23.43 Aligned_cols=54 Identities=19% Similarity=0.213 Sum_probs=38.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCH--HHHHHHHHCCCEEEEECC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM--ERRIVLRALGAEIILADS 123 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~--~~~~~l~~~Ga~v~~~~~ 123 (257)
+.+|+..+|..|.+++-.....|.+++++....... ...+.++..+.++..+..
T Consensus 8 ~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (249)
T PRK12825 8 VALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQA 63 (249)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEEC
Confidence 568889999999999999888999887766654322 223344556766666654
No 480
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=41.56 E-value=48 Score=29.84 Aligned_cols=109 Identities=15% Similarity=0.197 Sum_probs=55.1
Q ss_pred EEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHH--HHHHHHHHHHhCCCeE-EeCC-CCCCcchHhhHhhHHHHHHhh
Q 025113 95 LIIVMPSTCSMERRIVLRALGAEIILADSALRFEE--ILEKGEEILKKTPDGY-LLRQ-FENPANPKIHYETTGPEIWQD 170 (257)
Q Consensus 95 ~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~g~~t~~~Ei~~q 170 (257)
..|+.-.+.-..--..++.+| ++.++.+. .+.. ..+......++.+-.+ ..+. -.||.. ..-.-+.++++.
T Consensus 2 ~~i~~G~g~l~~l~~~l~~~g-r~lvVt~~-~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~---~~v~~~~~~~~~ 76 (366)
T PF00465_consen 2 TKIIFGRGALEELGEELKRLG-RVLVVTDP-SLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTL---EDVDEAAEQARK 76 (366)
T ss_dssp SEEEESTTGGGGHHHHHHCTT-EEEEEEEH-HHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BH---HHHHHHHHHHHH
T ss_pred CcEEEccCHHHHHHHHHHhcC-CEEEEECc-hHHhCccHHHHHHHHhhCceEEEEEecCCCCCcH---HHHHHHHHHHHh
Confidence 345565655555566678888 88877753 3433 3445554444442222 2221 122221 122233344444
Q ss_pred hCCCCCEEEEecCchhHHHHHHHHHHhcC------------------CCcEEEEEeCCCC
Q 025113 171 SGGKVDAFISGIGTGGTVTGAGRFLKENN------------------PDIKVYGVEPSES 212 (257)
Q Consensus 171 l~~~~d~iv~pvG~Gg~~aGi~~~~k~~~------------------~~~~vigv~~~~~ 212 (257)
. ++| .|+.+|+|+.+ -+++++.... +..++|.|-+..+
T Consensus 77 ~--~~D-~IIaiGGGS~~-D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~g 132 (366)
T PF00465_consen 77 F--GAD-CIIAIGGGSVM-DAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAG 132 (366)
T ss_dssp T--TSS-EEEEEESHHHH-HHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSS
T ss_pred c--CCC-EEEEcCCCCcC-cHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCcc
Confidence 3 577 47788888765 3344443221 1268899877665
No 481
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=41.46 E-value=1.7e+02 Score=23.85 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=36.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHCCCEEEEECC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADS 123 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~--~~~~~~l~~~Ga~v~~~~~ 123 (257)
..+|+..+|.-|..+|......|.+++++...+.+ ......+...+.++..+..
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (242)
T TIGR01829 2 IALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEG 57 (242)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEe
Confidence 45788899999999999988899988776653221 1122334445666665554
No 482
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=41.40 E-value=1.1e+02 Score=28.14 Aligned_cols=45 Identities=16% Similarity=0.137 Sum_probs=33.7
Q ss_pred ChHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHH----HHHCCCEEEEEC
Q 025113 78 GNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIV----LRALGAEIILAD 122 (257)
Q Consensus 78 GN~~~alA~~a~~~g~~~~i~vp~~~--~~~~~~~----l~~~Ga~v~~~~ 122 (257)
.|.+.+++.++..+|++++++-|+.- .+..++. .+..|+.+...+
T Consensus 204 ~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~ 254 (395)
T PRK07200 204 LSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVN 254 (395)
T ss_pred chHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 37789999999999999999999853 3443333 456788877665
No 483
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=41.39 E-value=2.4e+02 Score=25.48 Aligned_cols=83 Identities=16% Similarity=0.111 Sum_probs=36.4
Q ss_pred EEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCC-CeEEeCCCCCCcchHhhHhhHHHHHHhhhC-CC
Q 025113 97 IVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTP-DGYLLRQFENPANPKIHYETTGPEIWQDSG-GK 174 (257)
Q Consensus 97 i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~-~~ 174 (257)
|+.-.+.-...-+.++.+|.++.++.+.. .. ..+...+..++.+ .....+...||.. ....++.++.. .+
T Consensus 4 i~~G~g~~~~l~~~l~~~~~r~livtd~~-~~-~~~~v~~~L~~~g~~~~~~~~~~~p~~------~~v~~~~~~~~~~~ 75 (374)
T cd08183 4 IHFGRGVAKELPALAAELGRRVLLVTGAS-SL-RAAWLIEALRAAGIEVTHVVVAGEPSV------ELVDAAVAEARNAG 75 (374)
T ss_pred EEECcCHHHHHHHHHHHcCCcEEEEECCc-hH-HHHHHHHHHHHcCCeEEEecCCCCcCH------HHHHHHHHHHHhcC
Confidence 34444333333344555677776665422 22 3333333334332 1222222223321 22233333332 24
Q ss_pred CCEEEEecCchhHH
Q 025113 175 VDAFISGIGTGGTV 188 (257)
Q Consensus 175 ~d~iv~pvG~Gg~~ 188 (257)
+|. |+++|+|+.+
T Consensus 76 ~D~-IIaiGGGS~~ 88 (374)
T cd08183 76 CDV-VIAIGGGSVI 88 (374)
T ss_pred CCE-EEEecCchHH
Confidence 665 7888888654
No 484
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.29 E-value=2.1e+02 Score=23.76 Aligned_cols=72 Identities=13% Similarity=0.041 Sum_probs=42.8
Q ss_pred eEEEEeCC--ChHHHHHHHHHHHcCCcEEEEeCC-----------CCCH-HHHHHHHHCCCEEEEECCCC-CHHHHHHHH
Q 025113 70 TTLIEVTS--GNTGVGLAFIAAARGYNLIIVMPS-----------TCSM-ERRIVLRALGAEIILADSAL-RFEEILEKG 134 (257)
Q Consensus 70 ~~vv~~ss--GN~~~alA~~a~~~g~~~~i~vp~-----------~~~~-~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~~ 134 (257)
+.+|+..+ |.-|.++|..-...|.+++++... .... .....++.+|.+++.+..+- +.++..+..
T Consensus 7 ~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 86 (256)
T PRK12748 7 IALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYAPNRVF 86 (256)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHH
Confidence 55777766 479999998888889887777543 1111 12234556687777766432 234444445
Q ss_pred HHHHHhC
Q 025113 135 EEILKKT 141 (257)
Q Consensus 135 ~~~~~~~ 141 (257)
++..++.
T Consensus 87 ~~~~~~~ 93 (256)
T PRK12748 87 YAVSERL 93 (256)
T ss_pred HHHHHhC
Confidence 5555443
No 485
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=41.27 E-value=2.1e+02 Score=25.75 Aligned_cols=52 Identities=13% Similarity=0.220 Sum_probs=32.9
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (257)
Q Consensus 71 ~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (257)
.|+..+++.++..++..+- .+-.-.|+++...-..-...++.+|++++.++.
T Consensus 93 ~i~it~G~~~al~~~~~~~-~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~ 144 (391)
T PRK07309 93 EILVTIGATEALSASLTAI-LEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDT 144 (391)
T ss_pred cEEEeCChHHHHHHHHHHh-cCCCCEEEEeCCCCcchHHHHHHcCCEEEEEec
Confidence 4677777778877665543 333334555544333345667789999998875
No 486
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=41.27 E-value=2.7e+02 Score=25.10 Aligned_cols=150 Identities=13% Similarity=0.026 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHcCCcEEEEeCC--CCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeCCCCCCcchH
Q 025113 80 TGVGLAFIAAARGYNLIIVMPS--TCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPK 157 (257)
Q Consensus 80 ~~~alA~~a~~~g~~~~i~vp~--~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (257)
-|.++|......|.+++++=+. ..++.+.+.+...|+.+.. +.. +.+++. +..++.-. |+.
T Consensus 31 gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~Aa-----S~a-------EAAa~A-DVVIL~LP-d~a--- 93 (341)
T TIGR01724 31 GGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVS-----DDK-------EAAKHG-EIHVLFTP-FGK--- 93 (341)
T ss_pred CHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecC-----CHH-------HHHhCC-CEEEEecC-CHH---
Confidence 3566777777889999988443 2345566778888977532 111 233333 44433221 211
Q ss_pred hhHhhHHHHHHhhhCCCCCEEEEecCchhHHHHHHHHHHh-cCCCcEEEEEeCCCCccccCCCccc-ceec-cccCCeEE
Q 025113 158 IHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKE-NNPDIKVYGVEPSESAVLNGGQRGL-FIFI-SYLFRSFV 234 (257)
Q Consensus 158 ~g~~t~~~Ei~~ql~~~~d~iv~pvG~Gg~~aGi~~~~k~-~~~~~~vigv~~~~~~~~~~~~~~~-~~i~-~~~~~~~v 234 (257)
....+..++...+ .+..+|+-++|-+ ...+...|.. +.-+.+=++|.+.+-...++ .++. +.++ +...+.--
T Consensus 94 -aV~eVl~GLaa~L--~~GaIVID~STIs-P~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~-~~~~~~~~~~~~~~~~~~ 168 (341)
T TIGR01724 94 -GTFSIARTIIEHV--PENAVICNTCTVS-PVVLYYSLEKILRLKRTDVGISSMHPAAVPG-TPQHGHYVIGGKPTAGKE 168 (341)
T ss_pred -HHHHHHHHHHhcC--CCCCEEEECCCCC-HHHHHHHHHHHhhcCccccCeeccCCCCCCC-CCCCceeeeccccccccc
Confidence 1122334555554 3467777777754 3344555554 22234556666666444432 2222 2222 23333344
Q ss_pred EeChHHHHHHHHHHHhhc
Q 025113 235 LVDDGAVVHLHNYLLLHI 252 (257)
Q Consensus 235 ~v~d~e~~~a~~~l~~~~ 252 (257)
..+|++|.. +..|.+..
T Consensus 169 ~A~ee~i~~-~~el~~~~ 185 (341)
T TIGR01724 169 MATEEQISK-CVELAKST 185 (341)
T ss_pred cCCHHHHHH-HHHHHHHh
Confidence 455555544 44455544
No 487
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=41.08 E-value=2.3e+02 Score=27.34 Aligned_cols=49 Identities=24% Similarity=0.291 Sum_probs=29.4
Q ss_pred eEEEEeCCChHHH-HH--HHHHHHcCCcEEEEeCCCCCHH----HHHHHHHCCCEE
Q 025113 70 TTLIEVTSGNTGV-GL--AFIAAARGYNLIIVMPSTCSME----RRIVLRALGAEI 118 (257)
Q Consensus 70 ~~vv~~ssGN~~~-al--A~~a~~~g~~~~i~vp~~~~~~----~~~~l~~~Ga~v 118 (257)
..+|.+..||.|- ++ |......|.++.|++|...... ..++++.+|..+
T Consensus 137 ~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~~~~~~~~~~~~~~~~~~~~gi~~ 192 (544)
T PLN02918 137 RVLAICGPGNNGGDGLVAARHLHHFGYKPFVCYPKRTAKPLYTGLVTQLESLSVPF 192 (544)
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHCCCceEEEEcCCCCcHHHHHHHHHHHHcCCCe
Confidence 4456666666553 33 3334456999999998743322 345667777654
No 488
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=41.08 E-value=1.7e+02 Score=26.24 Aligned_cols=44 Identities=27% Similarity=0.362 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHcCCcEEEEeCCCC-C-HHHHH----HHHHCCCEEEEEC
Q 025113 79 NTGVGLAFIAAARGYNLIIVMPSTC-S-MERRI----VLRALGAEIILAD 122 (257)
Q Consensus 79 N~~~alA~~a~~~g~~~~i~vp~~~-~-~~~~~----~l~~~Ga~v~~~~ 122 (257)
|.+.++..+++.+|+.++++.|+.. + ...+. ..+..|+++...+
T Consensus 168 ~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~ 217 (334)
T PRK01713 168 NMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTD 217 (334)
T ss_pred CHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 6888999999999999999999853 2 22222 2345688877665
No 489
>PRK14057 epimerase; Provisional
Probab=41.06 E-value=2.3e+02 Score=24.43 Aligned_cols=49 Identities=22% Similarity=0.232 Sum_probs=31.5
Q ss_pred cCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCC----CCHHHHHHHHHHHHH
Q 025113 91 RGYNLIIVMPSTCSMERRIVLRALGAEIILADSA----LRFEEILEKGEEILK 139 (257)
Q Consensus 91 ~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~----~~~~~~~~~~~~~~~ 139 (257)
.|+.+.|-++......++..+...||++++.+.. .++.+..+..+++..
T Consensus 190 ~~~~~~IeVDGGI~~~ti~~l~~aGad~~V~GSalF~~~d~~~~i~~l~~~~~ 242 (254)
T PRK14057 190 KREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALFRDDRLVENTRSWRAMFK 242 (254)
T ss_pred cCCCceEEEECCCCHHHHHHHHHCCCCEEEEChHhhCCCCHHHHHHHHHHHHh
Confidence 4667777778777777887887788887777631 234444444444433
No 490
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=40.92 E-value=2e+02 Score=25.91 Aligned_cols=85 Identities=14% Similarity=0.197 Sum_probs=37.1
Q ss_pred EEeCCCCCHHHHHHHHHCCC-EEEEECCCCCHH-HHHHHHHHHHHhCC-CeEEeCC-CCCCcchHhhHhhHHHHHHhhhC
Q 025113 97 IVMPSTCSMERRIVLRALGA-EIILADSALRFE-EILEKGEEILKKTP-DGYLLRQ-FENPANPKIHYETTGPEIWQDSG 172 (257)
Q Consensus 97 i~vp~~~~~~~~~~l~~~Ga-~v~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~g~~t~~~Ei~~ql~ 172 (257)
++.-.+.-......++.+|+ ++.++.+....+ ...+...+..++.+ .....+. ..||.. ....++.+++.
T Consensus 4 i~~G~g~l~~l~~~l~~~~~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~------~~v~~~~~~~~ 77 (370)
T cd08551 4 IIFGAGAIEKLGEEIKNLGGRKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTL------SNVDAAVAAYR 77 (370)
T ss_pred EEECcCHHHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCH------HHHHHHHHHHH
Confidence 44444443444455666664 566555422222 23333444334331 1221221 123321 12234444432
Q ss_pred -CCCCEEEEecCchhHH
Q 025113 173 -GKVDAFISGIGTGGTV 188 (257)
Q Consensus 173 -~~~d~iv~pvG~Gg~~ 188 (257)
.++|. |+.+|+|+.+
T Consensus 78 ~~~~d~-IiaiGGGs~~ 93 (370)
T cd08551 78 EEGCDG-VIAVGGGSVL 93 (370)
T ss_pred hcCCCE-EEEeCCchHH
Confidence 24665 7788888654
No 491
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=40.81 E-value=1.8e+02 Score=22.96 Aligned_cols=43 Identities=23% Similarity=0.269 Sum_probs=27.2
Q ss_pred HHHHhhhC-CCCCEEEEecCchhHHHHHHHHHHhcCCCcEEEEEeCCC
Q 025113 165 PEIWQDSG-GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSE 211 (257)
Q Consensus 165 ~Ei~~ql~-~~~d~iv~pvG~Gg~~aGi~~~~k~~~~~~~vigv~~~~ 211 (257)
.++.+.+. ..+|.||+.+|.-+.+.|+..++- ...||||-+..
T Consensus 45 ~~~~~~~~~~~~~viIa~AG~~a~Lpgvva~~t----~~PVIgvP~~~ 88 (150)
T PF00731_consen 45 LEFVKEYEARGADVIIAVAGMSAALPGVVASLT----TLPVIGVPVSS 88 (150)
T ss_dssp HHHHHHTTTTTESEEEEEEESS--HHHHHHHHS----SS-EEEEEE-S
T ss_pred HHHHHHhccCCCEEEEEECCCcccchhhheecc----CCCEEEeecCc
Confidence 34455543 247899999998888888887664 35799995443
No 492
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=40.51 E-value=3.4e+02 Score=26.03 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=29.8
Q ss_pred EEEEeCCChHHHHHHHHHH----Hc--CCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113 71 TLIEVTSGNTGVGLAFIAA----AR--GYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (257)
Q Consensus 71 ~vv~~ssGN~~~alA~~a~----~~--g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (257)
.|+..+++..|..++..+- .+ |=++.+..|.-..-...-.+..+|++++.++.
T Consensus 157 ~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~ 215 (521)
T TIGR03801 157 DLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKA 215 (521)
T ss_pred eEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeec
Confidence 5777888888877766541 23 33333333433333333334556888887764
No 493
>PRK07023 short chain dehydrogenase; Provisional
Probab=40.48 E-value=1.7e+02 Score=23.98 Aligned_cols=50 Identities=18% Similarity=0.152 Sum_probs=35.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 025113 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (257)
+.+|+..+|.-|.++|......|.+++++.....+. .....|.++..+..
T Consensus 3 ~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~----~~~~~~~~~~~~~~ 52 (243)
T PRK07023 3 RAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPS----LAAAAGERLAEVEL 52 (243)
T ss_pred eEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchh----hhhccCCeEEEEEe
Confidence 357899999999999999888899988776543221 13345766665553
No 494
>PLN02477 glutamate dehydrogenase
Probab=40.47 E-value=1.4e+02 Score=27.74 Aligned_cols=53 Identities=15% Similarity=0.036 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHcCCCCCCceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 025113 49 DRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (257)
Q Consensus 49 ~R~a~~~~~~a~~~g~~~~g~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~ 101 (257)
-||..+.+..+.+.........+|+.-..||-|..+|......|.+++.+.+.
T Consensus 186 g~Gv~~~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~ 238 (410)
T PLN02477 186 GRGVVFATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDI 238 (410)
T ss_pred hHHHHHHHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence 35777777777654322333456888889999999999998899888876654
No 495
>PRK05875 short chain dehydrogenase; Provisional
Probab=40.40 E-value=2.2e+02 Score=23.88 Aligned_cols=71 Identities=15% Similarity=0.148 Sum_probs=41.6
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHC--CCEEEEECCCC-CHHHHHHHHHHHHH
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRAL--GAEIILADSAL-RFEEILEKGEEILK 139 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~--Ga~v~~~~~~~-~~~~~~~~~~~~~~ 139 (257)
.+.+|+.++|..|.+++......|.+++++...... ....+.+... +.++..+..+- +.++..+..++..+
T Consensus 8 k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (276)
T PRK05875 8 RTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATA 82 (276)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 366888999999999999988899987776543211 2223334433 24555554322 23334444444433
No 496
>PRK05855 short chain dehydrogenase; Validated
Probab=40.27 E-value=2.3e+02 Score=26.64 Aligned_cols=73 Identities=14% Similarity=0.073 Sum_probs=44.8
Q ss_pred ceEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHHHHhC
Q 025113 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADSA-LRFEEILEKGEEILKKT 141 (257)
Q Consensus 69 ~~~vv~~ssGN~~~alA~~a~~~g~~~~i~vp~~~~-~~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~~~~~~~~~ 141 (257)
.+.+|+..+|--|.++|......|.+++++-..... ....+.++..|.++..+..+ .+.++..+..++..++.
T Consensus 316 ~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 390 (582)
T PRK05855 316 KLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEH 390 (582)
T ss_pred CEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 456788889999999999988899996666443211 22234456667766655432 23444444455554443
No 497
>PRK05973 replicative DNA helicase; Provisional
Probab=40.24 E-value=1.3e+02 Score=25.57 Aligned_cols=55 Identities=31% Similarity=0.391 Sum_probs=39.3
Q ss_pred CCCCCCceEEEEe--CCChHHHH--HHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCE
Q 025113 63 GLITPGKTTLIEV--TSGNTGVG--LAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (257)
Q Consensus 63 g~~~~g~~~vv~~--ssGN~~~a--lA~~a~~~g~~~~i~vp~~~~~~~~~~l~~~Ga~ 117 (257)
|-+.+|...+|.+ ++|-+..+ +++.+...|-++..|--+..+....+.+..+|.+
T Consensus 59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R~~s~g~d 117 (237)
T PRK05973 59 SQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDRLRALGAD 117 (237)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHcCCC
Confidence 5577887777776 44555555 4555656798888888787777888888888753
No 498
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=40.20 E-value=1.3e+02 Score=21.00 Aligned_cols=46 Identities=17% Similarity=0.209 Sum_probs=32.8
Q ss_pred HHHHhhhCCCCCEEEEecCc-hhHHHHHHHHHHhcCCCcEEEEEeCCCC
Q 025113 165 PEIWQDSGGKVDAFISGIGT-GGTVTGAGRFLKENNPDIKVYGVEPSES 212 (257)
Q Consensus 165 ~Ei~~ql~~~~d~iv~pvG~-Gg~~aGi~~~~k~~~~~~~vigv~~~~~ 212 (257)
.+.+++. .||.+++-..- +.....+...++...+++++|.+.....
T Consensus 36 ~~~~~~~--~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~~ 82 (112)
T PF00072_consen 36 LELLKKH--PPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDEDD 82 (112)
T ss_dssp HHHHHHS--TESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESSTS
T ss_pred HHHhccc--CceEEEEEeeeccccccccccccccccccccEEEecCCCC
Confidence 3444443 58999988653 3455577888888889999999986665
No 499
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=40.15 E-value=2.5e+02 Score=24.95 Aligned_cols=104 Identities=19% Similarity=0.156 Sum_probs=64.0
Q ss_pred eEEEEeCCChHHHHHHHHHH-HcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEeC
Q 025113 70 TTLIEVTSGNTGVGLAFIAA-ARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLR 148 (257)
Q Consensus 70 ~~vv~~ssGN~~~alA~~a~-~~g~~~~i~vp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (257)
+++..-..|+-|+++|-.++ .+|+++..+-|.. ++.. ...+|.+. + ++++ +.++. +...++
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~-~~~~---~~~~~~~~--~----~l~e-------ll~~s-Dvv~lh 207 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRH-HKEA---EERFNARY--C----DLDT-------LLQES-DFVCII 207 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCC-chhh---HHhcCcEe--c----CHHH-------HHHhC-CEEEEe
Confidence 45667788999999999987 8999887655432 2211 23345431 1 1333 33333 555554
Q ss_pred CCCCCcchHhhHhhHHHHHHhhhCCCCCEEEEecCchhHH--HHHHHHHHh
Q 025113 149 QFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTV--TGAGRFLKE 197 (257)
Q Consensus 149 ~~~~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~pvG~Gg~~--aGi~~~~k~ 197 (257)
--.++.. ..-+..|.++++ +++.+++-++-|+.+ .++..+++.
T Consensus 208 ~plt~~T----~~li~~~~l~~m--k~ga~lIN~aRG~vVde~AL~~AL~~ 252 (323)
T PRK15409 208 LPLTDET----HHLFGAEQFAKM--KSSAIFINAGRGPVVDENALIAALQK 252 (323)
T ss_pred CCCChHH----hhccCHHHHhcC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 3223222 345667888888 479999999999886 456666553
No 500
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=40.08 E-value=61 Score=26.76 Aligned_cols=54 Identities=19% Similarity=0.221 Sum_probs=36.7
Q ss_pred CCCCCCceEEEEeCCCh----HHHHHHHHHHHc-CCcEEEEeCCCCCHHHHHHHHHCCC
Q 025113 63 GLITPGKTTLIEVTSGN----TGVGLAFIAAAR-GYNLIIVMPSTCSMERRIVLRALGA 116 (257)
Q Consensus 63 g~~~~g~~~vv~~ssGN----~~~alA~~a~~~-g~~~~i~vp~~~~~~~~~~l~~~Ga 116 (257)
|-+.+|...++++..|. .+...++.+... |-++..|.-+..+..-++.++.+|.
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~ 72 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGW 72 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCC
Confidence 44566677788876654 555566666666 9999888877777778888888886
Done!