BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025114
(257 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NWJ|A Chain A, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
pdb|3NWJ|B Chain B, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
Length = 250
Score = 339 bits (870), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 162/232 (69%), Positives = 198/232 (85%), Gaps = 3/232 (1%)
Query: 25 SASVLESGNV-HAPIDE-AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG 82
S+++LE+G++ H+P DE Q+LK K++E++PYL+GR +YLVGMMGSGKTTVGKI++ LG
Sbjct: 14 SSALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73
Query: 83 YSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLM-RQLVVSTGGGAVTR 141
Y+FFDCDTLIEQ++ GTSVAEIF+ +GE FREKETE L+KLSLM Q+VVSTGGGAV R
Sbjct: 74 YTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVVSTGGGAVIR 133
Query: 142 PINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEER 201
PINW+YM KGIS+WLDVPLEALA RIAAVGT SRPLLH ESGD YT ALNRLST+W+ R
Sbjct: 134 PINWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDAR 193
Query: 202 GEAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLKEEDDMA 253
GEAY A+ARVSLENI +KLG++ VS LTP IAIEA EQ++ +L++ED MA
Sbjct: 194 GEAYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYLEKEDGMA 245
>pdb|2PT5|A Chain A, Crystal Structure Of Shikimate Kinase (Aq_2177) From
Aquifex Aeolicus Vf5
pdb|2PT5|B Chain B, Crystal Structure Of Shikimate Kinase (Aq_2177) From
Aquifex Aeolicus Vf5
pdb|2PT5|C Chain C, Crystal Structure Of Shikimate Kinase (Aq_2177) From
Aquifex Aeolicus Vf5
pdb|2PT5|D Chain D, Crystal Structure Of Shikimate Kinase (Aq_2177) From
Aquifex Aeolicus Vf5
Length = 168
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 89/159 (55%), Gaps = 15/159 (9%)
Query: 60 IYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETE 119
IYL+G SGK+TVG +LS L F+D D + Q +G S+ +IF+ GE +FR+ E E
Sbjct: 3 IYLIGFXCSGKSTVGSLLSRSLNIPFYDVDEEV-QKREGLSIPQIFEKKGEAYFRKLEFE 61
Query: 120 VLQKLSLMRQLVVSTGG--GAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPL 177
VL+ LS +V+STGG GA +N+ +G +V++D+P E +R + RPL
Sbjct: 62 VLKDLSEKENVVISTGGGLGANEEALNF-XKSRGTTVFIDIPFEVFLERCK--DSKERPL 118
Query: 178 LHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLEN 216
L + L+ + L+EER + Y+ A+ +V E
Sbjct: 119 LKR---------PLDEIKNLFEERRKIYSKADIKVKGEK 148
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 86/146 (58%), Gaps = 7/146 (4%)
Query: 58 RCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKE 117
R I+LVG MG+GK+T+G+ L+ L F+D D IE+ G V +F L GE FR++E
Sbjct: 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT-GADVGWVFDLEGEEGFRDRE 63
Query: 118 TEVLQKLSLMRQLVVSTGGGAV-TRPINWRYMQKGISVWLDVPLEALAQRIAAVGTD-SR 175
+V+ +L+ + +V++TGGG+V +R R +G+ V+L+ +E +++A D R
Sbjct: 64 EKVINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIE---KQLARTQRDKKR 120
Query: 176 PLLHQCESGDAYTEAL-NRLSTLWEE 200
PLLH EAL N + L+EE
Sbjct: 121 PLLHVETPPREVLEALANERNPLYEE 146
>pdb|3TRF|A Chain A, Structure Of A Shikimate Kinase (Arok) From Coxiella
Burnetii
pdb|3TRF|B Chain B, Structure Of A Shikimate Kinase (Arok) From Coxiella
Burnetii
Length = 185
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 83/149 (55%), Gaps = 6/149 (4%)
Query: 60 IYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETE 119
IYL+G+MG+GKT+VG L+ + +D D IE+ G +A IF++ GE FR +E E
Sbjct: 8 IYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRT-GADIAWIFEMEGEAGFRRRERE 66
Query: 120 VLQKLSLMRQLVVSTGGGAVTRPINWRYM-QKGISVWLDVPLEALAQRIAAVGTDSRPLL 178
+++ L + ++++TGGG V N + + + G+ ++L ++ +RI G RPL
Sbjct: 67 MIEALCKLDNIILATGGGVVLDEKNRQQISETGVVIYLTASIDTQLKRIGQKGEMRRPLF 126
Query: 179 HQCESGDAYTEALNRLSTLWEERGEAYAN 207
+ S E L +L+ + + +A A+
Sbjct: 127 IKNNS----KEKLQQLNEIRKPLYQAMAD 151
>pdb|3VAA|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
pdb|3VAA|B Chain B, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
pdb|3VAA|C Chain C, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
Length = 199
Score = 77.0 bits (188), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 78/150 (52%), Gaps = 7/150 (4%)
Query: 60 IYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETE 119
I+L G MG+GKTT+GK + L F D D IE+ T V E+F GE FRE E
Sbjct: 28 IFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFHKT-VGELFTERGEAGFRELERN 86
Query: 120 VLQKLSLMRQLVVSTGGGAVTRPINWRYMQK-GISVWLDVPLEALAQRIAAVGTDSRPLL 178
+L +++ +V+STGGGA N +M + G +V+L+V + L +R+ + RP+L
Sbjct: 87 MLHEVAEFENVVISTGGGAPCFYDNMEFMNRTGKTVFLNVHPDVLFRRL-RIAKQQRPIL 145
Query: 179 HQCESGDAYTEALNRLSTLWEERGEAYANA 208
G E ++ + E+R Y A
Sbjct: 146 Q----GKEDDELMDFIIQALEKRAPFYTQA 171
>pdb|1SHK|A Chain A, The Three-dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi
pdb|2SHK|A Chain A, The Three-Dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi Complexed With Adp
pdb|1SHK|B Chain B, The Three-dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi
pdb|2SHK|B Chain B, The Three-Dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi Complexed With Adp
Length = 173
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 60 IYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETE 119
I++VG G GKTTVG+ L+ LGY F D D + Q G +VA++ G FR +E+E
Sbjct: 5 IFMVGARGCGKTTVGRELARALGYEFVDTDIFM-QHTSGMTVADVVAAEGWPGFRRRESE 63
Query: 120 VLQKLSLMRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEALAQRI-AAVGTDSRPL 177
LQ ++ + VV+TGGG V N ++M+ G V+L P E LA R+ A+ RP
Sbjct: 64 ALQAVATPNR-VVATGGGMVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASPQAHQRPT 122
Query: 178 L 178
L
Sbjct: 123 L 123
>pdb|1E6C|A Chain A, K15m Mutant Of Shikimate Kinase From Erwinia Chrysanthemi
pdb|1E6C|B Chain B, K15m Mutant Of Shikimate Kinase From Erwinia Chrysanthemi
Length = 173
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 60 IYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETE 119
I++VG G G TTVG+ L+ LGY F D D + Q G +VA++ G FR +E+E
Sbjct: 5 IFMVGARGCGMTTVGRELARALGYEFVDTDIFM-QHTSGMTVADVVAAEGWPGFRRRESE 63
Query: 120 VLQKLSLMRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEALAQRI-AAVGTDSRPL 177
LQ ++ + VV+TGGG V N ++M+ G V+L P E LA R+ A++ RP
Sbjct: 64 ALQAVATPNR-VVATGGGMVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASLQAHQRPT 122
Query: 178 L 178
L
Sbjct: 123 L 123
>pdb|2IYQ|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate And Adp
pdb|2IYR|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate
pdb|2IYR|B Chain B, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate
pdb|2IYS|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate, Open Lid (Conf. A)
pdb|2IYT|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Unliganded State, Open Lid (conf. A)
pdb|2IYU|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Adp, Open Lid (Conf. A)
pdb|2IYV|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Adp, Open Lid (Conf. B)
pdb|2IYW|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Mgatp, Open Lid (Conf. B)
pdb|2IYX|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate And So4
pdb|2IYY|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate-3-Phosphate And So4
pdb|2IYZ|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate-3-Phosphate And Adp
Length = 184
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Query: 62 LVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVL 121
LVG+ GSGK+T+G+ L+ LG D D IEQ G S+A+IF GE FR E +V+
Sbjct: 7 LVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT-GRSIADIFATDGEQEFRRIEEDVV 65
Query: 122 QKLSLMRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQC 181
+ V+S GGGAVT P + V+L++ +R G RPLL
Sbjct: 66 RAALADHDGVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTG--GNTVRPLLAGP 123
Query: 182 ESGDAYTEALNRLSTLWEERGEAYANANAR 211
+ + Y + + + L+ + N R
Sbjct: 124 DRAEKYRALMAKRAPLYRRVATMRVDTNRR 153
>pdb|1L4U|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp And Pt(Ii) At 1.8
Angstrom Resolution
pdb|1L4Y|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp At 2.0 Angstrom
Resolution
pdb|1U8A|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase In Complex With Shikimate And Adp At 2.15
Angstrom Resolution
pdb|1WE2|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp And Shikimic Acid
pdb|1ZYU|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase In Complex With Shikimate And Amppcp At 2.85
Angstrom Resolution
pdb|2G1J|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase At 2.0 Angstrom Resolution
pdb|2G1J|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase At 2.0 Angstrom Resolution
pdb|2G1K|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase In Complex With Shikimate At 1.75 Angstrom
Resolution
pdb|2DFN|A Chain A, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Shikimate At 1.9
Angstrons Of Resolution
pdb|2DFT|A Chain A, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|B Chain B, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|C Chain C, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|D Chain D, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|3BAF|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Amp-Pnp
Length = 176
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Query: 62 LVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVL 121
LVG+ GSGK+T+G+ L+ LG D D IEQ G S+A+IF GE FR E +V+
Sbjct: 7 LVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT-GRSIADIFATDGEQEFRRIEEDVV 65
Query: 122 QKLSLMRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQC 181
+ V+S GGGAVT P + V+L++ +R G RPLL
Sbjct: 66 RAALADHDGVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTG--GNTVRPLLAGP 123
Query: 182 ESGDAYTEALNRLSTLWEERGEAYANANAR 211
+ + Y + + + L+ + N R
Sbjct: 124 DRAEKYRALMAKRAPLYRRVATMRVDTNRR 153
>pdb|1VIA|A Chain A, Crystal Structure Of Shikimate Kinase
pdb|1VIA|B Chain B, Crystal Structure Of Shikimate Kinase
Length = 175
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 17/162 (10%)
Query: 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREK 116
+ I +G GSGK+T+ + L+ L F D D LIEQ + V+EIF+ E FFRE+
Sbjct: 4 AKNIVFIGFXGSGKSTLARALAKDLDLVFLDSDFLIEQKFN-QKVSEIFEQKRENFFREQ 62
Query: 117 ETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQK-GISVWLDVPLEALAQRIAAVGTDSR 175
E + S + ++TGGG V N ++K G ++L E L +R+ R
Sbjct: 63 EQKXADFFSSCEKACIATGGGFV----NVSNLEKAGFCIYLKADFEYLKKRLDKDEISKR 118
Query: 176 PLLH-QCESGDAYTEALNRLSTLWEERGEAYANANARVSLEN 216
PL + + ++ Y E L++ +E++ AN +++EN
Sbjct: 119 PLFYDEIKAKKLYNERLSK----YEQK------ANFILNIEN 150
>pdb|1ZUH|A Chain A, Structural Basis For Shikimate-Binding Specificity Of
Helicobacter Pylori Shikimate Kinase
pdb|1ZUI|A Chain A, Structural Basis For Shikimate-binding Specificity Of
Helicobacter Pylori Shikimate Kinase
pdb|3HR7|A Chain A, Crystal Structure Of The Shikimate Kinase-Sulfate Complex
From Helicobacter Pylori
pdb|3HR7|B Chain B, Crystal Structure Of The Shikimate Kinase-Sulfate Complex
From Helicobacter Pylori
pdb|3MUF|A Chain A, Shikimate Kinase From Helicobacter Pylori In Complex With
Shikimate-3- Phosphate And Adp
Length = 168
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 81/163 (49%), Gaps = 20/163 (12%)
Query: 60 IYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETE 119
+ L+G MGSGK+++ + L L D D +I + V G SV EIF+ GE FR E
Sbjct: 10 LVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV-GLSVREIFEELGEDNFRMFEKN 68
Query: 120 VLQKLSLMRQ-LVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLL 178
++ +L ++ V+STGGG V N + + G + +L + E L +R+ + RPLL
Sbjct: 69 LIDELKTLKTPHVISTGGGIVMHE-NLKGL--GTTFYLKMDFETLIKRLNQKEREKRPLL 125
Query: 179 HQCESGDAYTEALNRLSTLWEERGEAY-ANA----NARVSLEN 216
+ L + L+E+R Y NA +AR L N
Sbjct: 126 NN----------LTQAKELFEKRQALYEKNASFIIDARGGLNN 158
>pdb|3N2E|A Chain A, Crystal Structure Of Helicobactor Pylori Shikimate Kinase
In Complex With Nsc162535
pdb|3N2E|B Chain B, Crystal Structure Of Helicobactor Pylori Shikimate Kinase
In Complex With Nsc162535
pdb|3N2E|C Chain C, Crystal Structure Of Helicobactor Pylori Shikimate Kinase
In Complex With Nsc162535
Length = 168
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 20/163 (12%)
Query: 60 IYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETE 119
+ L+G MGSGK+++ + L L D D +I + V G SV EIF+ GE FR E
Sbjct: 4 LVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV-GLSVREIFEELGEDNFRMFEKN 62
Query: 120 VLQKLSLMRQ-LVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLL 178
++ +L ++ V+STGGG V N + + G + +L + E L +R+ RPLL
Sbjct: 63 LIDELKTLKTPHVISTGGGIVMHE-NLKGL--GTTFYLKMDFETLIKRLNQKERAKRPLL 119
Query: 179 HQCESGDAYTEALNRLSTLWEERGEAY-ANA----NARVSLEN 216
+ L + L+E+R Y NA +AR L N
Sbjct: 120 NN----------LTQAKELFEKRQALYEKNASFIIDARGGLNN 152
>pdb|3MRS|A Chain A, Crystal Structure Of Shikimate Kinase Mutant (R57a) From
Helicobacter Pylori
Length = 168
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 20/163 (12%)
Query: 60 IYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETE 119
+ L+G MGSGK+++ + L L D D +I + V G SV EIF+ GE F E
Sbjct: 10 LVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV-GLSVREIFEELGEDNFAMFEKN 68
Query: 120 VLQKLSLMRQ-LVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLL 178
++ +L ++ V+STGGG V N + + G + +L + E L +R+ + RPLL
Sbjct: 69 LIDELKTLKTPHVISTGGGIVMHE-NLKGL--GTTFYLKMDFETLIKRLNQKEREKRPLL 125
Query: 179 HQCESGDAYTEALNRLSTLWEERGEAY-ANA----NARVSLEN 216
+ L + L+E+R Y NA +AR L N
Sbjct: 126 NN----------LTQAKELFEKRQALYEKNASFIIDARGGLNN 158
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Query: 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFF 86
++LE+ ++H + + ++ + S I SG + ++G G+GK+T+ ++L+G L S
Sbjct: 10 ALLEASHLHYHVQQQALINDVSLHIA---SGEMVAIIGPNGAGKSTLLRLLTGYLSPSHG 66
Query: 87 DCDTLIEQSVDG------TSVAEIFKLYGEGFFREKETEVLQ 122
+C L+ Q+++ + + Y E F +EV+Q
Sbjct: 67 ECH-LLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQ 107
>pdb|2PEY|A Chain A, Crystal Strucutre Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1
pdb|2PEY|B Chain B, Crystal Strucutre Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1
pdb|2PEZ|A Chain A, Crystal Structrue Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1 In Complex With Cyclic Paps
And Dadp
pdb|2PEZ|B Chain B, Crystal Structrue Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1 In Complex With Cyclic Paps
And Dadp
Length = 179
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 54 YLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFF 113
++ G ++L G+ G+GKTTV L L C TL DG ++ + GF
Sbjct: 2 HMRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL-----DGDNIRQGLN-KNLGFS 55
Query: 114 REKETEVLQKLSLMRQLVVSTGGGAVTRPI--------NWRYMQKGIS-----VWLDVPL 160
E E +++++ + +L G +T I N R + +G S V++D PL
Sbjct: 56 PEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPL 115
Query: 161 EALAQR 166
QR
Sbjct: 116 HVCEQR 121
>pdb|2OFW|A Chain A, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|B Chain B, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|C Chain C, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|D Chain D, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|E Chain E, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|F Chain F, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|G Chain G, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|H Chain H, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
Length = 208
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 19/125 (15%)
Query: 55 LSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFR 114
G I+L G+ G+GKTTV L L C TL DG ++ + GF
Sbjct: 31 FRGCTIWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL-----DGDNIRQGLN-KNLGFSP 84
Query: 115 EKETEVLQKLSLMRQLVVSTGGGAVTRPI--------NWRYMQKGIS-----VWLDVPLE 161
E E +++++ + +L G +T I N R + +G S V++D PL
Sbjct: 85 EDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLH 144
Query: 162 ALAQR 166
QR
Sbjct: 145 VCEQR 149
>pdb|2YVU|A Chain A, Crystal Structure Of Ape1195
pdb|2YVU|B Chain B, Crystal Structure Of Ape1195
Length = 186
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 14/84 (16%)
Query: 56 SGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDG----TSVAEIFKLYGEG 111
G ++L G+ GSGKTT+ L+ +L + + L DG T+V+E G G
Sbjct: 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL-----DGDWARTTVSE-----GAG 61
Query: 112 FFREKETEVLQKLSLMRQLVVSTG 135
F RE+ L++++ + +L+ G
Sbjct: 62 FTREERLRHLKRIAWIARLLARNG 85
>pdb|2OFX|A Chain A, Crystal Structure Of The Apsk Domain Of Human Papss1 In
Complex With Adpmg And Paps
pdb|2OFX|B Chain B, Crystal Structure Of The Apsk Domain Of Human Papss1 In
Complex With Adpmg And Paps
Length = 207
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 19/125 (15%)
Query: 55 LSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFR 114
G ++L G+ G+GKTTV L L C TL DG ++ + GF
Sbjct: 30 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL-----DGDNIRQGLN-KNLGFSP 83
Query: 115 EKETEVLQKLSLMRQLVVSTGGGAVTRPI--------NWRYMQKGIS-----VWLDVPLE 161
E E +++++ + +L G +T I N R + +G S V++D PL
Sbjct: 84 EDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLH 143
Query: 162 ALAQR 166
QR
Sbjct: 144 VCEQR 148
>pdb|1X6V|B Chain B, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1X6V|A Chain A, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1XJQ|B Chain B, Adp Complex Of Human Paps Synthetase 1
pdb|1XJQ|A Chain A, Adp Complex Of Human Paps Synthetase 1
pdb|1XNJ|B Chain B, Aps Complex Of Human Paps Synthetase 1
pdb|1XNJ|A Chain A, Aps Complex Of Human Paps Synthetase 1
Length = 630
Score = 34.3 bits (77), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 19/125 (15%)
Query: 55 LSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFR 114
G ++L G+ G+GKTTV L L C TL DG ++ + GF
Sbjct: 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL-----DGDNIRQGLN-KNLGFSP 103
Query: 115 EKETEVLQKLSLMRQLVVSTGGGAVTRPI--------NWRYMQKGIS-----VWLDVPLE 161
E E +++++ + +L G +T I N R + +G S V++D PL
Sbjct: 104 EDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLH 163
Query: 162 ALAQR 166
QR
Sbjct: 164 VCEQR 168
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 6/48 (12%)
Query: 43 VLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---GYSFFD 87
VLK+ + E E +G+ +VG GSGKTT+ KIL+G+L G F D
Sbjct: 26 VLKDVNAEFE---TGKIYVVVGKNGSGKTTLLKILAGLLAAAGEIFLD 70
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 10/77 (12%)
Query: 29 LESGNVHAPIDEAQ-VLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFD 87
+E NV D+ + VLK+ + I+P G+ + LVG GSGKTT+ +L F+D
Sbjct: 355 IEFKNVWFSYDKKKPVLKDITFHIKP---GQKVALVGPTGSGKTTIVNLL-----MRFYD 406
Query: 88 CDTLIEQSVDGTSVAEI 104
D + VDG + +I
Sbjct: 407 VDRG-QILVDGIDIRKI 422
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYS-- 84
S LE ++ A ID +LK + + G L+G G+GK+T+GKIL+G Y+
Sbjct: 2 SQLEIRDLWASIDGETILKGVNLVVP---KGEVHALMGPNGAGKSTLGKILAGDPEYTVE 58
Query: 85 ----FFDCDTLIEQSVDGTSVAEIF 105
D + ++E S D + +F
Sbjct: 59 RGEILLDGENILELSPDERARKGLF 83
>pdb|1JJV|A Chain A, Dephospho-Coa Kinase In Complex With Atp
Length = 206
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 61 YLVGM---MGSGKTTVGKILSGVLGYSFFDCDTLIEQSV--DGTSVAEIFKLYGEGFFRE 115
Y+VG+ +GSGKTT+ + + LG D D + + V D +++I + +G E
Sbjct: 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTE 61
Query: 116 K 116
+
Sbjct: 62 Q 62
>pdb|2GKS|A Chain A, Crystal Structure Of The Bi-Functional Atp Sulfurylase-Aps
Kinase From Aquifex Aeolicus, A Chemolithotrophic
Thermophile
pdb|2GKS|B Chain B, Crystal Structure Of The Bi-Functional Atp Sulfurylase-Aps
Kinase From Aquifex Aeolicus, A Chemolithotrophic
Thermophile
Length = 546
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 87/206 (42%), Gaps = 43/206 (20%)
Query: 56 SGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFRE 115
G C++L G+ +GK+T+ +IL+ +L TL++ V T ++ G GF +E
Sbjct: 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKV-TLLDGDVVRTHLSR-----GLGFSKE 424
Query: 116 KETEVLQKLSLMRQLVVSTGG---GAVTRPIN------WRYMQKG--ISVWLDVPLEALA 164
+ ++ + +V G A+ P M++G I V++D P+E
Sbjct: 425 DRITNILRVGFVASEIVKHNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCE 484
Query: 165 QRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHK 224
+R D + L + + G L + T ++ E RV
Sbjct: 485 ER------DVKGLYKKAKEG------LIKGFTGVDDPYEPPVAPEVRV------------ 520
Query: 225 DVSSLTPVTIAIEALE--QIEGFLKE 248
D + LTP A++ LE + EGF+K+
Sbjct: 521 DTTKLTPEESALKILEFLKKEGFIKD 546
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 70/166 (42%), Gaps = 31/166 (18%)
Query: 55 LSGRCIYLVGMMGSGKTTVGKILSGVLGYS---FFD-------------CDTLIEQSVDG 98
++G + ++G GSGKTT+ + +SG+L YS F + L E G
Sbjct: 28 VNGEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIG 87
Query: 99 TSVAEIFKLYGE--GFFREKETEVLQKLS-----LMRQLVVSTGGGAVTRPINWRYMQKG 151
+V +I LY E G R+ E+L+ L L R+L + G +V + +
Sbjct: 88 VTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQP 147
Query: 152 ISVWLDVPLE--------ALAQRIAAVGTDSRPLLHQCESGDAYTE 189
V LD P E +++ I G + + H+ + + Y E
Sbjct: 148 EIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKE 193
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Query: 56 SGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCD 89
SG LVG GSGK+T+ K+L Y F+D +
Sbjct: 45 SGTTCALVGHTGSGKSTIAKLL-----YRFYDAE 73
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 37 PIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCD 89
P E L+N + +I +G+ + LVG GSGK+T+ +++ F+D D
Sbjct: 352 PGREVPALRNINLKIP---AGKTVALVGRSGSGKSTIASLIT-----RFYDID 396
>pdb|1JJI|A Chain A, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
pdb|1JJI|B Chain B, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
pdb|1JJI|C Chain C, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
pdb|1JJI|D Chain D, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
Length = 311
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 156 LDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLE 215
LD+P++ + ++A DS P Q S Y EA+NR ++EER + +E
Sbjct: 2 LDMPIDPVYYQLAEY-FDSLPKFDQFSSAREYREAINR---IYEERNRQLSQHERVERVE 57
Query: 216 NIAVKLGHKDV 226
+ +K + D+
Sbjct: 58 DRTIKGRNGDI 68
>pdb|2Z6J|A Chain A, Crystal Structure Of S. Pneumoniae Enoyl-acyl Carrier
Protein Reductase (fabk) In Complex With An Inhibitor
pdb|2Z6J|B Chain B, Crystal Structure Of S. Pneumoniae Enoyl-acyl Carrier
Protein Reductase (fabk) In Complex With An Inhibitor
Length = 332
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 131 VVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDS 174
VV+TG G ++ + R+ + GI V VP ALA+R+ +G D+
Sbjct: 91 VVTTGAGNPSKYME-RFHEAGIIVIPVVPSVALAKRMEKIGADA 133
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSG 79
+ L G++ VL + S ++P G ++++G G GKTT+ + L+G
Sbjct: 3 AALHIGHLSKSFQNTPVLNDISLSLDP---GEILFIIGASGCGKTTLLRCLAG 52
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 37 PIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCD 89
P + L+N + +I +G+ + LVG GSGK+T+ +++ F+D D
Sbjct: 352 PGRDVPALRNINLKIP---AGKTVALVGRSGSGKSTIASLIT-----RFYDID 396
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 60 IYLVGMMGSGKTTVGKILSGVLGYSFF 86
I L G G+GKT +GK ++ G +FF
Sbjct: 120 ILLFGPPGTGKTLIGKCIASQSGATFF 146
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 60 IYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQS------VDGTSVAEIF 105
+ L+G G GK+T+ I +GV DC+ L E + VDG S I
Sbjct: 40 VVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIIL 91
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 60 IYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQS------VDGTSVAEIF 105
+ L+G G GK+T+ I +GV DC+ L E + VDG S I
Sbjct: 9 VVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIIL 60
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 13/69 (18%)
Query: 30 ESGNVHAPIDEAQVLKNKSQEIEPYLS--------GRCIYLVGMMGSGKTTVGKILSGVL 81
E+ V+ +D V + +P LS G+ + LVG GSGK+T+ + +
Sbjct: 334 EAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFT--- 390
Query: 82 GYSFFDCDT 90
F+D D+
Sbjct: 391 --RFYDVDS 397
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 40 EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL 81
E + L+N S I G C+ + G GSGK+T+ +I++G++
Sbjct: 19 EKKALENVSLVIN---EGECLLVAGNTGSGKSTLLQIVAGLI 57
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 40 EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL 81
E + L+N S I G C+ + G GSGK+T+ +I++G++
Sbjct: 21 EKKALENVSLVIN---EGECLLVAGNTGSGKSTLLQIVAGLI 59
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 58 RCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIF 105
+ + LVG G+GKT + K ++G FF S+ G+S E+F
Sbjct: 45 KGVLLVGPPGTGKTLLAKAVAGEAHVPFF--------SMGGSSFIEMF 84
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSG 79
+ +L ++H +++ +L+ S ++ P G ++G GSGK+T+ L+G
Sbjct: 18 SHMLSIKDLHVSVEDKAILRGLSLDVHP---GEVHAIMGPNGSGKSTLSATLAG 68
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 33 NVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSG 79
++H +++ +L+ S ++ P G ++G GSGK+T+ L+G
Sbjct: 6 DLHVSVEDKAILRGLSLDVHP---GEVHAIMGPNGSGKSTLSATLAG 49
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Query: 29 LESGNVH-APIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFD 87
+E NVH + D + L++ S + P G+ + LVG G+GK+T+ ++L + F+D
Sbjct: 54 IEFENVHFSYADGRETLQDVSFTVMP---GQTLALVGPSGAGKSTILRLL-----FRFYD 105
Query: 88 CDTLIEQSVDGTSVAEI 104
+ + +DG ++++
Sbjct: 106 ISSGCIR-IDGQDISQV 121
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 60 IYLVGMMGSGKTTVGKILSGVLGYSFF--DCDTLIEQSVDGTSVAEIFK 106
I L+G GSGKT + + L+ +L F D TL E G V I +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQ 102
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 60 IYLVGMMGSGKTTVGKILSGVLGYSFF--DCDTLIEQSVDGTSVAEIFK 106
I L+G GSGKT + + L+ +L F D TL E G V I +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQ 102
>pdb|1T10|A Chain A, Phosphoglucose Isomerase From Leishmania Mexicana In
Complex With Substrate D-Fructose-6-Phosphate
Length = 605
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 56 SGRCIYLVGMMGSGKTTVGKIL--SGVLGYSFFDCDTLIEQSVDGTSVAEIFK 106
+G+ IY + +G G + +G ++ + +S D +VDGT +AE+ K
Sbjct: 192 TGKSIYNIVNIGIGGSDLGPVMVTEALKPFSKRDLHCFFVSNVDGTHMAEVLK 244
>pdb|1Q50|A Chain A, Phosphoglucose Isomerase From Leishmania Mexicana
Length = 561
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 56 SGRCIYLVGMMGSGKTTVGKIL--SGVLGYSFFDCDTLIEQSVDGTSVAEIFK 106
+G+ IY + +G G + +G ++ + +S D +VDGT +AE+ K
Sbjct: 149 TGKSIYNIVNIGIGGSDLGPVMVTEALKPFSKRDLHCFFVSNVDGTHMAEVLK 201
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 40 EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKIL 77
E ++LK S +EP G+ + LVG G GK+TV +L
Sbjct: 1091 EIEILKGLSFSVEP---GQTLALVGPSGCGKSTVVALL 1125
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 43 VLKNKSQEIEPYLSGR--CIYLVGMMGSGKT-TVGKILSGVLGYS----FFDCDTLIEQS 95
V + SQ I+ L G C++ G GSGKT T+ +G++ S F D + L E+
Sbjct: 447 VFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHPTNGMIPLSLKKIFNDIEELKEKG 506
Query: 96 VDGTSVAEIFKLYGEG 111
T + ++Y E
Sbjct: 507 WSYTVRGKFIEIYNEA 522
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,195,514
Number of Sequences: 62578
Number of extensions: 280211
Number of successful extensions: 1029
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 978
Number of HSP's gapped (non-prelim): 72
length of query: 257
length of database: 14,973,337
effective HSP length: 97
effective length of query: 160
effective length of database: 8,903,271
effective search space: 1424523360
effective search space used: 1424523360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)