BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025114
(257 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SJ05|SK1_ARATH Shikimate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=SK1
PE=1 SV=2
Length = 303
Score = 341 bits (874), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 169/254 (66%), Positives = 208/254 (81%), Gaps = 4/254 (1%)
Query: 1 MEPNVASKQRSYDSVKVSCTFNSLSASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCI 60
++P + QR S VSC+ N+ S+++LE+G+V+ P DE +LK K++E++PYL+GR +
Sbjct: 49 LQPERRNDQRRAVSPAVSCSDNN-SSALLETGSVY-PFDE-DILKRKAEEVKPYLNGRSM 105
Query: 61 YLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEV 120
YLVGMMGSGKTTVGK++S VLGY+FFDCDTLIEQ+++GTSVAEIF +GE FFR KET+
Sbjct: 106 YLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDA 165
Query: 121 LQKLSLMRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQ 180
L+KLS Q+VVSTGGGAV RPINW+YM KGIS+WLDVPLEALA RIAAVGTDSRPLLH
Sbjct: 166 LKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRPLLHD 225
Query: 181 CESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALE 240
ESGDAY+ A RLS +W+ERGEAY NANARVSLENIA K G+K+VS LTP IAIEA E
Sbjct: 226 -ESGDAYSVAFKRLSAIWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIEAFE 284
Query: 241 QIEGFLKEEDDMAI 254
Q+ FL++E+ M I
Sbjct: 285 QVLSFLEKEETMEI 298
>sp|Q8GY88|SK2_ARATH Shikimate kinase 2, chloroplastic OS=Arabidopsis thaliana GN=SK2
PE=1 SV=1
Length = 300
Score = 339 bits (870), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 162/232 (69%), Positives = 198/232 (85%), Gaps = 3/232 (1%)
Query: 25 SASVLESGNV-HAPIDE-AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG 82
S+++LE+G++ H+P DE Q+LK K++E++PYL+GR +YLVGMMGSGKTTVGKI++ LG
Sbjct: 64 SSALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 123
Query: 83 YSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLM-RQLVVSTGGGAVTR 141
Y+FFDCDTLIEQ++ GTSVAEIF+ +GE FREKETE L+KLSLM Q+VVSTGGGAV R
Sbjct: 124 YTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVVSTGGGAVIR 183
Query: 142 PINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEER 201
PINW+YM KGIS+WLDVPLEALA RIAAVGT SRPLLH ESGD YT ALNRLST+W+ R
Sbjct: 184 PINWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDAR 243
Query: 202 GEAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLKEEDDMA 253
GEAY A+ARVSLENI +KLG++ VS LTP IAIEA EQ++ +L++ED MA
Sbjct: 244 GEAYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYLEKEDGMA 295
>sp|Q00497|SK_SOLLC Shikimate kinase, chloroplastic OS=Solanum lycopersicum GN=SK PE=1
SV=1
Length = 300
Score = 327 bits (839), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 163/254 (64%), Positives = 193/254 (75%), Gaps = 2/254 (0%)
Query: 1 MEPNVASKQRSYDSVKVSCTFNSLSASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCI 60
++P A+ +KVSC+ ++ ASVLESG A IDE + LKNK++E+E YL GRC+
Sbjct: 48 LQPRKAAHSDRRVQLKVSCSPQNVQASVLESGCFSASIDEIETLKNKAEEVEEYLDGRCV 107
Query: 61 YLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEV 120
YLVGMMG GKTTVG+IL+ LGYSFFDCD LIEQ+V G +VAEIF+L GE FFR+ ETEV
Sbjct: 108 YLVGMMGCGKTTVGRILAETLGYSFFDCDRLIEQAVGGITVAEIFELRGESFFRDNETEV 167
Query: 121 LQKLSLMRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQ 180
L KLSLM +LVVSTGGGAV RPINWR+M KGISVWLDVPLEALA+RI GT SRPLLH+
Sbjct: 168 LHKLSLMHRLVVSTGGGAVVRPINWRHMHKGISVWLDVPLEALAKRITTEGTKSRPLLHE 227
Query: 181 CESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALE 240
ESGD Y L RL+TL E RGE YANA+ARVSLENIA+K KDV +TP I +E L
Sbjct: 228 -ESGDVYDTTLKRLTTLMETRGENYANASARVSLENIALK-REKDVCHITPAEITLEVLI 285
Query: 241 QIEGFLKEEDDMAI 254
QIE FLK + + +
Sbjct: 286 QIENFLKTQKSVVV 299
>sp|Q7X7H9|SK3_ORYSJ Shikimate kinase 3, chloroplastic OS=Oryza sativa subsp. japonica
GN=SK3 PE=1 SV=2
Length = 287
Score = 293 bits (751), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 141/211 (66%), Positives = 178/211 (84%), Gaps = 1/211 (0%)
Query: 39 DEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDG 98
DEA VLK K++++ PYL+ RCIYLVGMMGSGKTTVGKIL+ VLGYSFFD D L+E++V
Sbjct: 73 DEALVLKQKAEDVVPYLNDRCIYLVGMMGSGKTTVGKILAEVLGYSFFDSDKLVEKAVGI 132
Query: 99 TSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQKGISVWLDV 158
+SVAEIF+L+ E FFR+ E+EVL+ LS M +LVV+TGGGAV RPINW YM+KG ++WLDV
Sbjct: 133 SSVAEIFQLHSEAFFRDNESEVLRDLSSMHRLVVATGGGAVIRPINWSYMKKGSTIWLDV 192
Query: 159 PLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIA 218
PL+ALA+RIAAVGT SRPLLHQ ESGD Y +A +L+ L+E+R ++YANA+ARVSLE+IA
Sbjct: 193 PLDALARRIAAVGTASRPLLHQ-ESGDPYAKAYAKLTALFEQRMDSYANADARVSLEHIA 251
Query: 219 VKLGHKDVSSLTPVTIAIEALEQIEGFLKEE 249
VK GH +V++LTP IAIEAL ++E FL E+
Sbjct: 252 VKQGHSNVTTLTPSAIAIEALLKMESFLTEK 282
>sp|Q5NTH3|SK2_ORYSJ Shikimate kinase 2, chloroplastic OS=Oryza sativa subsp. japonica
GN=SK2 PE=1 SV=1
Length = 307
Score = 293 bits (749), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 143/217 (65%), Positives = 174/217 (80%), Gaps = 1/217 (0%)
Query: 33 NVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLI 92
++H +DEA +LK KS+E+ YL+GRCIYLVGMMGSGK+TV KIL+ VLGYSFFD D L+
Sbjct: 70 SLHNSVDEALLLKRKSEEVLFYLNGRCIYLVGMMGSGKSTVAKILAEVLGYSFFDSDKLV 129
Query: 93 EQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQKGI 152
EQ+V SVA+IFK + E FFR+ E+ VL+ LS MR+LVV+TGGGAV RP+NW+YM+KG+
Sbjct: 130 EQAVGMPSVAQIFKEHSEAFFRDNESSVLRDLSSMRRLVVATGGGAVIRPVNWKYMKKGL 189
Query: 153 SVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212
SVWLDVPL+ALA+RIA VGT SRPLL Q S D YT A ++LS L E+RG+AYANA+ARV
Sbjct: 190 SVWLDVPLDALARRIAQVGTASRPLLDQ-PSSDPYTAAFSKLSMLAEQRGDAYANADARV 248
Query: 213 SLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLKEE 249
SLE IA K GH DVS LTP IAIEAL +IE F+ E
Sbjct: 249 SLEEIAAKQGHDDVSKLTPTDIAIEALLKIENFVTEH 285
>sp|Q5NTH4|SK1_ORYSJ Shikimate kinase 1, chloroplastic OS=Oryza sativa subsp. japonica
GN=SK1 PE=1 SV=1
Length = 308
Score = 292 bits (747), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 141/217 (64%), Positives = 174/217 (80%), Gaps = 1/217 (0%)
Query: 33 NVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLI 92
+H +DEA +LK KS+E+ YL+GRCIYLVGMMGSGK+TVGKI+S VLGYSFFD D L+
Sbjct: 72 TLHNSVDEALLLKRKSEEVLFYLNGRCIYLVGMMGSGKSTVGKIMSEVLGYSFFDSDKLV 131
Query: 93 EQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQKGI 152
EQ+V SVA+IFK++ E FFR+ E+ VL+ LS M++LVV+TGGGAV RP+NW+YM+KG+
Sbjct: 132 EQAVGMPSVAQIFKVHSEAFFRDNESSVLRDLSSMKRLVVATGGGAVIRPVNWKYMKKGL 191
Query: 153 SVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212
SVWLDVPL+ALA+RIA VGT SRPLL Q SGD YT A ++LS L E+RG+AYANA+ RV
Sbjct: 192 SVWLDVPLDALARRIAKVGTASRPLLDQ-PSGDPYTMAFSKLSMLAEQRGDAYANADVRV 250
Query: 213 SLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLKEE 249
SLE IA K GH DVS LTP IAIE+ +IE F+ E
Sbjct: 251 SLEEIASKQGHDDVSKLTPTDIAIESFHKIENFVIEH 287
>sp|Q5N4D3|AROK_SYNP6 Shikimate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301
/ SAUG 1402/1) GN=aroK PE=3 SV=1
Length = 190
Score = 150 bits (379), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/162 (48%), Positives = 112/162 (69%), Gaps = 12/162 (7%)
Query: 55 LSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFR 114
L+G ++LVG+MGSGKTT+GK+L+ LGY++ D D+LIE +V G S+ EIF GE FR
Sbjct: 7 LNGLDLFLVGLMGSGKTTIGKLLAESLGYTYVDTDSLIE-NVTGRSIPEIFASDGEAGFR 65
Query: 115 EKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDS 174
+ ET+VL++++ R+LVV+TGGG V RP NW Y+Q+G+ +WLDVP+ L +R+ G +
Sbjct: 66 QIETQVLEEVASYRRLVVATGGGIVIRPENWSYLQQGLVIWLDVPIPELLRRLE--GDQN 123
Query: 175 RPLLHQCESGDAYTEA-LNRLSTLWEERGEAYANANARVSLE 215
RPLL TEA L LWE+R + YA A+ R+++E
Sbjct: 124 RPLLQ--------TEAPATTLQALWEQRRDRYAQADLRIAIE 157
>sp|Q31PU5|AROK_SYNE7 Shikimate kinase OS=Synechococcus elongatus (strain PCC 7942)
GN=aroK PE=3 SV=1
Length = 190
Score = 150 bits (379), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/162 (48%), Positives = 112/162 (69%), Gaps = 12/162 (7%)
Query: 55 LSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFR 114
L+G ++LVG+MGSGKTT+GK+L+ LGY++ D D+LIE +V G S+ EIF GE FR
Sbjct: 7 LNGLDLFLVGLMGSGKTTIGKLLAESLGYTYVDTDSLIE-NVTGRSIPEIFASDGEAGFR 65
Query: 115 EKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDS 174
+ ET+VL++++ R+LVV+TGGG V RP NW Y+Q+G+ +WLDVP+ L +R+ G +
Sbjct: 66 QIETQVLEEVASYRRLVVATGGGIVIRPENWSYLQQGLVIWLDVPIPELLRRLE--GDQN 123
Query: 175 RPLLHQCESGDAYTEA-LNRLSTLWEERGEAYANANARVSLE 215
RPLL TEA L LWE+R + YA A+ R+++E
Sbjct: 124 RPLLQ--------TEAPATTLQALWEQRRDRYAQADLRIAIE 157
>sp|B0JFW8|AROK_MICAN Shikimate kinase OS=Microcystis aeruginosa (strain NIES-843)
GN=aroK PE=3 SV=1
Length = 190
Score = 138 bits (348), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 105/163 (64%), Gaps = 10/163 (6%)
Query: 55 LSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFR 114
L G ++L+GMMGSGK+T+G++LS L Y FFD D LIE+ V G + EIF GE FR
Sbjct: 10 LRGLSVFLLGMMGSGKSTLGELLSRRLQYRFFDTDILIER-VAGKKIREIFVDEGEATFR 68
Query: 115 EKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDS 174
E ET+VL +LS + + V++TGGG V +P+NW Y++ G+ +WLDVPLE L +R+ S
Sbjct: 69 ELETQVLAELSSLTKTVIATGGGMVLKPMNWSYLRHGLMIWLDVPLEILVKRLKQ--DTS 126
Query: 175 RPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENI 217
RPLL T+ ++L L E+R YA A+ R+ + ++
Sbjct: 127 RPLLQS-------TDLDSKLELLLEQRRGLYAEADLRIVVSDL 162
>sp|Q2JKT7|AROK_SYNJB Shikimate kinase OS=Synechococcus sp. (strain JA-2-3B'a(2-13))
GN=aroK PE=3 SV=1
Length = 187
Score = 136 bits (343), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 101/162 (62%), Gaps = 9/162 (5%)
Query: 55 LSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFR 114
L G +YL+GMMGSGK+TVG L+ L + FFD D L+EQ V G+S+A+IF +GE +FR
Sbjct: 10 LRGVNVYLIGMMGSGKSTVGSELAAQLRFQFFDTDGLVEQ-VGGSSIAQIFAEHGEAYFR 68
Query: 115 EKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDS 174
+ ET+VL +LS +LV++TGGG V RP NW Y+ G++VWLDV E + QR+
Sbjct: 69 DLETQVLAQLSSYTRLVIATGGGIVLRPKNWSYLHHGLTVWLDVAPELIWQRLKR-DPGQ 127
Query: 175 RPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLEN 216
RPLL + A L L +ER YA A+ RV + +
Sbjct: 128 RPLLQTPDPQAA-------LYKLMQEREPFYAQADVRVPIRS 162
>sp|A5GQN5|AROK_SYNR3 Shikimate kinase OS=Synechococcus sp. (strain RCC307) GN=aroK PE=3
SV=1
Length = 195
Score = 135 bits (341), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/202 (43%), Positives = 115/202 (56%), Gaps = 21/202 (10%)
Query: 46 NKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIF 105
+ SQ + L G +YLVGMMGSGK+TVG +L+ LGY F D D +I Q+ G S+ EIF
Sbjct: 5 DPSQPLGERLQGTNLYLVGMMGSGKSTVGPLLAKALGYRFLDADAVISQAA-GCSIPEIF 63
Query: 106 KLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQ 165
+ GE FR+ E +VLQ+LS LVV+TGGG VT P NW +++G+ +WLDV E L +
Sbjct: 64 ERDGEEGFRQLERQVLQQLSQWHSLVVATGGGIVTVPANWGELRQGVVIWLDVAEEELMR 123
Query: 166 RIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKD 225
R+ A RPLL +GD + RL L E+R Y A+ RVS A G D
Sbjct: 124 RLQA-DPGGRPLL----AGD---DPAGRLHGLLEKRQPLYGQADLRVS----AQGEGASD 171
Query: 226 VSSLTPVTIAIEALEQIEGFLK 247
+S L+Q+ G LK
Sbjct: 172 ISE--------RILQQLPGLLK 185
>sp|P72796|AROK_SYNY3 Shikimate kinase OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=aroK PE=3 SV=1
Length = 189
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 113/199 (56%), Gaps = 21/199 (10%)
Query: 51 IEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGE 110
I+ L G ++L+GMMGSGK+TVG +L+ LGY FFD D LIE+ V G ++A+IF GE
Sbjct: 6 IKEQLQGVNLFLIGMMGSGKSTVGPLLAEQLGYRFFDADVLIER-VAGKAIADIFAEDGE 64
Query: 111 GFFREKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAV 170
FR+ ETEVL L+ + V++TGGG V R NW Y+ G+ +WLD LE L R+
Sbjct: 65 DTFRDLETEVLGHLAAQTRSVIATGGGVVLRRQNWSYLHHGLVIWLDGSLELLLARLQ-- 122
Query: 171 GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLT 230
G ++RPLL Q E+ + RL L +R YA A+ R L+ +
Sbjct: 123 GDEARPLL-QVENLE------ERLGNLLAQRQPLYAQADLRFPLQ-----------ADQD 164
Query: 231 PVTIAIEALEQIEGFLKEE 249
P+ IA E L I G LK +
Sbjct: 165 PLAIAGELLATIPGLLKPQ 183
>sp|Q9LW20|SKL1_ARATH Probable inactive shikimate kinase like 1, chloroplastic
OS=Arabidopsis thaliana GN=SKL1 PE=2 SV=1
Length = 280
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 117/211 (55%), Gaps = 14/211 (6%)
Query: 37 PIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV 96
PID V+K K+ +I P L G I+LVG+ S KT GK+L+ L Y +FD D LI ++
Sbjct: 72 PID---VVKRKAMDIAPELKGASIFLVGINNSIKTNTGKLLAEALRYYYFDSDNLITEAA 128
Query: 97 DGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQKGISVWL 156
G A+ K E F+E ETEVL++LS M +LVV G GAV N ++ GIS+W+
Sbjct: 129 GGNVSAQALKEADEKAFQESETEVLKQLSSMGRLVVCAGDGAVQSLRNLALLRHGISIWI 188
Query: 157 DVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLEN 216
DVPL+ I A G D H + E + L +E+ + Y A+ +SLE
Sbjct: 189 DVPLD-----ITAKGDDDS--FH----SEPSPELFDTLKASYEKSRKGYETADVSISLEK 237
Query: 217 IAVKLGHKDVSSLTPVTIAIEALEQIEGFLK 247
IA KL +D+ ++T IA+E L++IE +
Sbjct: 238 IATKLEFEDLEAVTSEDIALEILKEIEKLTR 268
>sp|Q3AH55|AROK_SYNSC Shikimate kinase OS=Synechococcus sp. (strain CC9605) GN=aroK PE=3
SV=1
Length = 199
Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 97/159 (61%), Gaps = 2/159 (1%)
Query: 42 QVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSV 101
+V+ + + ++ LSGR +YLVGMMGSGKT+ G+ L+ LGY F D D +IEQ+ G S+
Sbjct: 7 RVMADSTPTLKKRLSGRSLYLVGMMGSGKTSTGRPLAERLGYGFVDADAVIEQAA-GCSI 65
Query: 102 AEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLE 161
EIF+ G+ FR E++VL +S LVV+TGGG VT+P NW + GI +WLDV +
Sbjct: 66 PEIFERDGDAGFRSLESQVLSAISQRHSLVVATGGGVVTQPENWGLLHSGIVIWLDVVPD 125
Query: 162 ALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEE 200
L QR+ A T RPLL + + LN L+ E
Sbjct: 126 QLLQRLNADST-VRPLLQTTDPEASLNALLNERRPLYSE 163
>sp|Q3B009|AROK_SYNS9 Shikimate kinase OS=Synechococcus sp. (strain CC9902) GN=aroK PE=3
SV=1
Length = 191
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 96/162 (59%), Gaps = 9/162 (5%)
Query: 55 LSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFR 114
LSGR IYL+GMMGSGKT+ G+ L+ LGY F D D +IEQ V G ++ EIF+ GE FR
Sbjct: 12 LSGRSIYLIGMMGSGKTSTGRPLAKRLGYGFVDADAVIEQ-VAGCTIPEIFERDGEAGFR 70
Query: 115 EKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDS 174
E++VL +S LVV+TGGG VT+P NW + GI VWLDV L +R+ T
Sbjct: 71 SIESQVLNAISQRHSLVVATGGGVVTKPENWGQLHSGIVVWLDVNRAQLIERLRDDST-Q 129
Query: 175 RPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLEN 216
RPLL Q A L TL +ER Y A+ V +++
Sbjct: 130 RPLLQQPNPEAA-------LDTLLQERRPLYGEADLTVVIKD 164
>sp|Q2JRJ6|AROK_SYNJA Shikimate kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=aroK
PE=3 SV=1
Length = 189
Score = 129 bits (323), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 96/164 (58%), Gaps = 9/164 (5%)
Query: 55 LSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFR 114
L G +YL+GMM SGK+T+G L+ L FFD D L+EQ V G S+A+IF GE FR
Sbjct: 10 LRGVTVYLIGMMASGKSTLGAELAAQLRRPFFDTDALVEQ-VAGCSIAQIFAEQGEAHFR 68
Query: 115 EKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDS 174
E ET+VL +LS +LVV+TGGG V RP NW Y+ G++VWLD E + QR+
Sbjct: 69 ELETQVLAQLSGYTRLVVATGGGIVLRPKNWSYLHHGLTVWLDAAPELIWQRLKR-DPGQ 127
Query: 175 RPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIA 218
RPLL + A L L +ER YA A+ RV + + A
Sbjct: 128 RPLLQTPDPQAA-------LQRLMQEREPFYAQADVRVPIHSEA 164
>sp|Q7VE85|AROK_PROMA Shikimate kinase OS=Prochlorococcus marinus (strain SARG / CCMP1375
/ SS120) GN=aroK PE=3 SV=1
Length = 190
Score = 128 bits (322), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/172 (43%), Positives = 104/172 (60%), Gaps = 8/172 (4%)
Query: 45 KNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEI 104
K + ++ L GR IYLVGMMGSGK+T G L+ +L YSF D D LIE+ V +SV++I
Sbjct: 4 KLRPNQVIKKLGGRIIYLVGMMGSGKSTTGPHLAKLLKYSFIDQDELIEK-VAKSSVSQI 62
Query: 105 FKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALA 164
F+ GE FR+ ET+VL+++ LVV+TGGG VTR NW + +GI +WLD E L
Sbjct: 63 FREEGENGFRDIETQVLKQIGQRHSLVVATGGGLVTRSENWGVLHQGIVIWLDPNRELLF 122
Query: 165 QRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLEN 216
R+ + T RPLL + D L +L ++R +YA A+ +S+E
Sbjct: 123 ARLKSDKTVVRPLLDNKDPKDV-------LDSLIKQRYLSYAEADLHISIER 167
>sp|Q7NH27|AROK_GLOVI Shikimate kinase OS=Gloeobacter violaceus (strain PCC 7421) GN=aroK
PE=3 SV=1
Length = 177
Score = 127 bits (319), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 95/159 (59%), Gaps = 9/159 (5%)
Query: 55 LSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFR 114
L G +YLVGMMGSGK+TVG++L+ LGY F D D LIEQ V G V EIF+ GE FR
Sbjct: 2 LKGVSLYLVGMMGSGKSTVGRLLAEKLGYGFVDLDALIEQ-VSGKRVGEIFEREGEAVFR 60
Query: 115 EKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDS 174
+ E+ VL ++S +LVV+TGGG V NW Y+ G+ VWLD +E L R+ +
Sbjct: 61 DLESRVLAEVSAYTRLVVATGGGVVLARRNWGYLHHGVVVWLDADIETLLGRVEHE-PGT 119
Query: 175 RPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVS 213
RPLL GD + RL L ER YA A+ RVS
Sbjct: 120 RPLL---AGGDRHL----RLVELLGERARLYAQADVRVS 151
>sp|Q7U469|AROK_SYNPX Shikimate kinase OS=Synechococcus sp. (strain WH8102) GN=aroK PE=3
SV=1
Length = 191
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 113/205 (55%), Gaps = 21/205 (10%)
Query: 44 LKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAE 103
+ + + ++ L GR +YLVGMMGSGKT+ G+ L+ LGY F D D +IEQ+ G S+ E
Sbjct: 1 MSDATLSLKQRLGGRSLYLVGMMGSGKTSTGRPLAEQLGYGFVDADAVIEQAA-GCSIPE 59
Query: 104 IFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEAL 163
IF+ GE FR E++VL + LVV+TGGG VT+ NW + GI VWLDV E L
Sbjct: 60 IFERDGEAGFRALESQVLNAIGQRHSLVVATGGGVVTQQENWGLLHSGIVVWLDVVPEQL 119
Query: 164 AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGH 223
QR+ A T RPLL Q E DA ALN L +R YA A+ V
Sbjct: 120 MQRLRADST-VRPLL-QTEDPDA---ALN---ALLNQRRPLYAEADLTVV---------- 161
Query: 224 KDVSSLTPVTIAIEALEQIEGFLKE 248
++ TP+ +A L+ + LK+
Sbjct: 162 --INQETPLAVADGILQLLPSLLKD 184
>sp|Q8DKH7|AROK_THEEB Shikimate kinase OS=Thermosynechococcus elongatus (strain BP-1)
GN=aroK PE=3 SV=1
Length = 183
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 106/200 (53%), Gaps = 25/200 (12%)
Query: 50 EIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYG 109
+++ L G IYLVGMMG+GKTT G++L+ LGYSF D D +I + + EIF G
Sbjct: 2 KLQERLGGANIYLVGMMGAGKTTTGRLLAQRLGYSFVDTDAVIT-AFRQRPIREIFAQEG 60
Query: 110 EGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAA 169
E FRE E +VL ++S LVV+TGGG V P+NW Y+ GI VWL VPL L QR+
Sbjct: 61 EPAFRELEQQVLAQVSSYHHLVVATGGGIVLNPMNWSYLHHGIVVWLHVPLAVLCQRLRQ 120
Query: 170 VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN--ARVSLENIAVKLGHKDVS 227
RPLL + + RL L + R YA A+ R++LE+
Sbjct: 121 --DRERPLLQEQPLEE-------RLGELLQARQHLYAQADLELRITLED----------- 160
Query: 228 SLTPVTIAIEALEQIEGFLK 247
TP T+ LE + LK
Sbjct: 161 --TPETVCDRLLETLPCILK 178
>sp|Q8YXG9|AROK_NOSS1 Shikimate kinase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=aroK PE=3 SV=1
Length = 181
Score = 124 bits (310), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 108/194 (55%), Gaps = 21/194 (10%)
Query: 55 LSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFR 114
L G +YL+GMMG+GKTTVG +L+ LGY F D D +I Q+ S+ EIF GE FR
Sbjct: 5 LQGVNLYLIGMMGAGKTTVGHLLAKELGYGFLDTDNVIAQATK-KSINEIFAEAGEAGFR 63
Query: 115 EKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDS 174
+ E++VL ++ +L V+TGGG V R NW Y+ G+ +WLDVP++ L R+AA T
Sbjct: 64 QIESDVLAQVCSYTKLTVATGGGIVLRRENWSYLHHGLILWLDVPVDILYARLAADTT-- 121
Query: 175 RPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLTPVTI 234
RPLL + +L +L E+R Y+ A+ R+ + + TP I
Sbjct: 122 RPLLQD-------DDPKGKLRSLLEQRTPLYSQADLRICVN-----------AEETPEQI 163
Query: 235 AIEALEQIEGFLKE 248
A + ++ I LK+
Sbjct: 164 ANKVMQAIPSVLKQ 177
>sp|B7JZT6|AROK_CYAP8 Shikimate kinase OS=Cyanothece sp. (strain PCC 8801) GN=aroK PE=3
SV=1
Length = 187
Score = 121 bits (304), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 108/196 (55%), Gaps = 21/196 (10%)
Query: 52 EPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEG 111
+ L G IYL+GMMGSGK+T+GKIL+ L Y FFD D LIE+ V S+ +IF GE
Sbjct: 4 QKLLQGINIYLIGMMGSGKSTIGKILAQRLDYRFFDTDILIER-VTQQSINDIFVTQGET 62
Query: 112 FFREKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVG 171
FR+ ET+VL +++ + V++TGGG V NW Y+ G+ +WLDV ++ L R+ +
Sbjct: 63 VFRDIETQVLSEVAACTRSVIATGGGIVLNSQNWSYLHHGLIIWLDVSIKLLKTRL--IN 120
Query: 172 TDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLTP 231
+RPLL + ++ +L TL E+R Y A+ + + + TP
Sbjct: 121 DTTRPLLKE-------SDLTLKLKTLDEQRRNLYNKADLTIVIN-----------QNRTP 162
Query: 232 VTIAIEALEQIEGFLK 247
+I E LE I +K
Sbjct: 163 ESIVSEILEAIPTVIK 178
>sp|Q3MFQ9|AROK_ANAVT Shikimate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC
7937) GN=aroK PE=3 SV=1
Length = 181
Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 107/194 (55%), Gaps = 21/194 (10%)
Query: 55 LSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFR 114
L G +YL+GMMG+GKTTVG +L+ LGY F D D +I Q+ S+ EIF GE FR
Sbjct: 5 LQGVNLYLIGMMGAGKTTVGHLLAQELGYGFLDTDNVIAQAAK-KSINEIFAEAGEAGFR 63
Query: 115 EKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDS 174
+ E++VL ++ +L V+TGGG V R NW Y+ G+ VWLDV ++ L R+AA T
Sbjct: 64 QIESDVLAQVCSYTKLTVATGGGIVLRRENWSYLHHGLIVWLDVSVDILYARLAADTT-- 121
Query: 175 RPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLTPVTI 234
RPLL + +L +L E+R Y+ A+ R+ + + TP I
Sbjct: 122 RPLLQD-------DDPKGKLRSLLEQRTPLYSQADLRICVN-----------AEETPEQI 163
Query: 235 AIEALEQIEGFLKE 248
A + ++ I LK+
Sbjct: 164 ANKIMQVIPSVLKQ 177
>sp|B2IX35|AROK_NOSP7 Shikimate kinase OS=Nostoc punctiforme (strain ATCC 29133 / PCC
73102) GN=aroK PE=3 SV=1
Length = 181
Score = 119 bits (297), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 107/195 (54%), Gaps = 21/195 (10%)
Query: 55 LSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFR 114
L G +YL+GMMG GKTTVG +L+ LGY F D D +I ++ D S+ ++F GE FR
Sbjct: 5 LQGVNLYLIGMMGVGKTTVGPLLAKHLGYGFLDLDGVIAKATD-KSINQLFAEEGEAGFR 63
Query: 115 EKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDS 174
+ E++VL ++ +L ++TGGG V R NW Y+ G+ VWLDVP+E + +R+A T
Sbjct: 64 QIESDVLSQVCAFTKLTIATGGGIVLRRENWGYLHHGLIVWLDVPVELIYRRLAEDTT-- 121
Query: 175 RPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLTPVTI 234
RPLL + +L +L E+R Y+ A+ ++++ TP I
Sbjct: 122 RPLLQDADLK-------GKLRSLLEQRTPLYSQADLHITVQ-----------EGETPEDI 163
Query: 235 AIEALEQIEGFLKEE 249
A +E I LK +
Sbjct: 164 ANRIIEVIPNVLKPQ 178
>sp|Q46HR4|AROK_PROMT Shikimate kinase OS=Prochlorococcus marinus (strain NATL2A) GN=aroK
PE=3 SV=1
Length = 198
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 97/162 (59%), Gaps = 9/162 (5%)
Query: 55 LSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFR 114
L GR I+L+GMMGSGK+ G +L+ ++ Y+F D D +IE++ S++ IF+ GE FR
Sbjct: 14 LGGRNIFLIGMMGSGKSQTGPVLAKMINYAFVDTDDVIEKA-SKQSISSIFEKDGEKVFR 72
Query: 115 EKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDS 174
+ E +VL+++S LV++TGGG VT P NW + +GI +WLD+ L +R+ +
Sbjct: 73 DVEKKVLKEISQHHSLVIATGGGLVTLPENWGILHQGIVIWLDLDLRRSIKRLES-DHKR 131
Query: 175 RPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLEN 216
RPLL GD E S ++E R Y ++ R+ +E+
Sbjct: 132 RPLL----LGDNLAE---NFSQIYESRKPIYLESDLRIEVED 166
>sp|C0QR76|AROK_PERMH Shikimate kinase OS=Persephonella marina (strain DSM 14350 / EX-H1)
GN=aroK PE=3 SV=1
Length = 164
Score = 115 bits (287), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 93/159 (58%), Gaps = 13/159 (8%)
Query: 58 RCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKE 117
R IYLVG MGSGK+TVGK+L+ LG+ F D D IE+ +G + +IF+ GE +FR+ E
Sbjct: 2 RNIYLVGFMGSGKSTVGKLLAEKLGFRFVDIDQEIEKE-EGKKIKDIFREKGESYFRDLE 60
Query: 118 TEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQK-GISVWLDVPLEALAQRIAAVGTDSRP 176
++++ + LVVSTGGG N R M++ G +WLD PLE + +R G D RP
Sbjct: 61 KRMIERFLGSKNLVVSTGGGLGADSENMRKMKENGTVIWLDTPLETVFERCK--GDDERP 118
Query: 177 LLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLE 215
LL + + L+E+R + YA A+ R+S E
Sbjct: 119 LLKKNRK---------EIKELFEKRKKIYAQADIRISTE 148
>sp|C3KXE0|AROK_CLOB6 Shikimate kinase OS=Clostridium botulinum (strain 657 / Type Ba4)
GN=aroK PE=3 SV=1
Length = 170
Score = 114 bits (284), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 93/156 (59%), Gaps = 3/156 (1%)
Query: 60 IYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETE 119
I L+GM SGK+T+G+ +S +L Y D DTLIE+ ++G S+ EIFK+YGE +FREKE E
Sbjct: 4 IVLIGMPLSGKSTLGREISKILKYDLIDTDTLIEK-MEGKSIKEIFKIYGEDYFREKELE 62
Query: 120 VLQKLSLMRQLVVSTGGGAVTRPINWRYMQK-GISVWLDVPLEALAQRIAAVGTDSRPLL 178
++ KL V+STGGG N ++K G +V+L VPLE L +R+ G D+RPLL
Sbjct: 63 IINKLKKESNKVISTGGGLPIYNKNIYELKKIGFTVYLKVPLEELIKRMVKKGEDTRPLL 122
Query: 179 HQCESGDAYTEALNRLSTLWEERGEAYANANARVSL 214
++ NR+ ++E+ N N SL
Sbjct: 123 KNNDTKFLEEMYKNRIE-IYEKAHTIICNTNHEESL 157
>sp|A9BCW6|AROK_PROM4 Shikimate kinase OS=Prochlorococcus marinus (strain MIT 9211)
GN=aroK PE=3 SV=1
Length = 197
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 93/160 (58%), Gaps = 10/160 (6%)
Query: 55 LSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFR 114
L GR +YLVGMMGSGK+ G +L+ L Y F D D +IE+ V S++EIF GE FR
Sbjct: 14 LGGRNLYLVGMMGSGKSRTGPVLAKKLSYGFVDVDDVIEK-VTNQSISEIFDQEGEIGFR 72
Query: 115 EKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDS 174
E ET++LQ++ LVV+TGGG VTRP NW + +G+ +W+D+ E R+ + T
Sbjct: 73 EIETQILQEIGQRHSLVVATGGGIVTRPENWGILHQGVVIWIDLDREIALSRLRSDET-P 131
Query: 175 RPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSL 214
RPLL + + L++ER Y ++ +S+
Sbjct: 132 RPLLQK--------NLDDNFDCLFKERLPIYLESDVHLSV 163
>sp|A2C650|AROK_PROM3 Shikimate kinase OS=Prochlorococcus marinus (strain MIT 9303)
GN=aroK PE=3 SV=1
Length = 192
Score = 111 bits (278), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 99/172 (57%), Gaps = 14/172 (8%)
Query: 55 LSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFR 114
L GR +YLVGMM SGK++ G+ L+ L Y F D D +IEQ + G + +IF GE FR
Sbjct: 14 LGGRNLYLVGMMASGKSSTGRPLAEQLSYGFVDTDAVIEQ-LAGQPIPKIFNEEGEEGFR 72
Query: 115 EKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDS 174
E++VL + LVV+TGGG V++P NW + +GI +WL+ E L +R+ A + +
Sbjct: 73 AMESQVLNAIGQRHSLVVATGGGMVSKPENWGILHQGIVIWLNPGREELFRRLHA-DSGN 131
Query: 175 RPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSL-----ENIAVKL 221
RPLL Q E +A L+ ER YA A+ RV + + IA+K+
Sbjct: 132 RPLL-QTEDPEAA------FDCLFAERLPLYAEADLRVEVGAEEPDGIALKI 176
>sp|C1FPC6|AROK_CLOBJ Shikimate kinase OS=Clostridium botulinum (strain Kyoto / Type A2)
GN=aroK PE=3 SV=1
Length = 170
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 92/160 (57%), Gaps = 3/160 (1%)
Query: 60 IYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETE 119
I L+GM SGK+T+G+ LS +L Y D DTLIE+ D S+ EIFK+YGE +FREKE +
Sbjct: 4 IVLIGMPLSGKSTLGRELSKILKYDLIDTDTLIEEMED-KSIKEIFKIYGEDYFREKELK 62
Query: 120 VLQKLSLMRQLVVSTGGGAVTRPINWRYMQK-GISVWLDVPLEALAQRIAAVGTDSRPLL 178
++ KL V+STGGG N ++K G +V+L VPLE L +R+ D+RPLL
Sbjct: 63 IINKLKKESNKVISTGGGLPIYNKNIYELKKIGFTVYLKVPLEELIKRMVKKEYDTRPLL 122
Query: 179 HQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIA 218
++ NR+ ++E+ N N + SL I
Sbjct: 123 KNNDTKFLEEMYKNRIE-IYEKAHTIICNTNYKESLITIV 161
>sp|A5I323|AROK_CLOBH Shikimate kinase OS=Clostridium botulinum (strain Hall / ATCC 3502
/ NCTC 13319 / Type A) GN=aroK PE=3 SV=1
Length = 170
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 92/160 (57%), Gaps = 3/160 (1%)
Query: 60 IYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETE 119
I L+GM SGK+T+G+ LS +L Y D DTLIE+ D S+ EIFK+YGE +FREKE +
Sbjct: 4 IVLIGMPLSGKSTLGRELSKILKYDLIDTDTLIEEMED-KSIKEIFKIYGEDYFREKELK 62
Query: 120 VLQKLSLMRQLVVSTGGGAVTRPINWRYMQK-GISVWLDVPLEALAQRIAAVGTDSRPLL 178
++ KL V+STGGG N ++K G +V+L VPLE L +R+ D+RPLL
Sbjct: 63 IINKLKKESNKVISTGGGLPIYNKNIYELKKIGFTVYLKVPLEELIKRMVKKEYDTRPLL 122
Query: 179 HQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIA 218
++ NR+ ++E+ N N + SL I
Sbjct: 123 KNNDTKFLEEMYKNRIE-IYEKAHTIICNTNYKESLITIV 161
>sp|A7FUV4|AROK_CLOB1 Shikimate kinase OS=Clostridium botulinum (strain ATCC 19397 / Type
A) GN=aroK PE=3 SV=1
Length = 170
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 92/160 (57%), Gaps = 3/160 (1%)
Query: 60 IYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETE 119
I L+GM SGK+T+G+ LS +L Y D DTLIE+ D S+ EIFK+YGE +FREKE +
Sbjct: 4 IVLIGMPLSGKSTLGRELSKILKYDLIDTDTLIEEMED-KSIKEIFKIYGEDYFREKELK 62
Query: 120 VLQKLSLMRQLVVSTGGGAVTRPINWRYMQK-GISVWLDVPLEALAQRIAAVGTDSRPLL 178
++ KL V+STGGG N ++K G +V+L VPLE L +R+ D+RPLL
Sbjct: 63 IINKLKKESNKVISTGGGLPIYNKNIYELKKIGFTVYLKVPLEELIKRMVKKEYDTRPLL 122
Query: 179 HQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIA 218
++ NR+ ++E+ N N + SL I
Sbjct: 123 KNNDTKFLEEMYKNRIE-IYEKAHTIICNTNYKESLITIV 161
>sp|Q7V904|AROK_PROMM Shikimate kinase OS=Prochlorococcus marinus (strain MIT 9313)
GN=aroK PE=3 SV=1
Length = 192
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 103/198 (52%), Gaps = 21/198 (10%)
Query: 55 LSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFR 114
L GR +YLVGMM SGK++ G+ L+ L Y F D D +IEQ + G + +IF GE FR
Sbjct: 14 LGGRNLYLVGMMASGKSSTGRPLAEQLSYGFVDTDAVIEQ-LAGQPIPKIFSEEGEAGFR 72
Query: 115 EKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDS 174
E++VL + LVV+TGGG V++P NW + +GI +WL+ E L +R+ A + +
Sbjct: 73 TMESQVLNAIGQRHSLVVATGGGIVSKPENWGVLHQGIVIWLNPGREELLRRLNA-DSGN 131
Query: 175 RPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLTPVTI 234
RPLL Q E +A L+ ER Y A+ H +V + P I
Sbjct: 132 RPLL-QTEDPEAA------FDCLFAERLPLYCEADL------------HVEVGAEEPDGI 172
Query: 235 AIEALEQIEGFLKEEDDM 252
A++ +E + L M
Sbjct: 173 ALKIIEFLPQLLSPPPQM 190
>sp|A7GEL1|AROK_CLOBL Shikimate kinase OS=Clostridium botulinum (strain Langeland / NCTC
10281 / Type F) GN=aroK PE=3 SV=1
Length = 170
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 87/152 (57%), Gaps = 10/152 (6%)
Query: 60 IYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETE 119
I L+GM SGK+T+G+ LS +L Y D DTLIE+ D S+ EIFK+YGE +FREKE E
Sbjct: 4 IVLIGMPLSGKSTLGRELSKILKYDLIDTDTLIEEMED-KSIKEIFKIYGEDYFREKELE 62
Query: 120 VLQKLSLMRQLVVSTGGGAVTRPINWRYMQK-GISVWLDVPLEALAQRIAAVGTDSRPLL 178
++ K V+STGGG N ++K G +V+L VPLE L +R+ D+RPLL
Sbjct: 63 IINKFKKESNKVISTGGGLPIYNKNIYELKKIGFTVYLKVPLEELIKRMVKKEYDTRPLL 122
Query: 179 HQCESGDAYTEALNRLSTLWEERGEAYANANA 210
++ L +++ R E Y A+
Sbjct: 123 KNNDT--------KFLEEMYKNRIEIYEKAHT 146
>sp|B1KT67|AROK_CLOBM Shikimate kinase OS=Clostridium botulinum (strain Loch Maree / Type
A3) GN=aroK PE=3 SV=1
Length = 170
Score = 107 bits (268), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 88/152 (57%), Gaps = 10/152 (6%)
Query: 60 IYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETE 119
I L+GM SGK+T+G+ LS +L Y D DTLIE+ D S+ EIFK+YGE +FREKE +
Sbjct: 4 IILIGMPLSGKSTLGRELSKILKYDLIDTDTLIEEMED-KSIKEIFKIYGEDYFREKELK 62
Query: 120 VLQKLSLMRQLVVSTGGGAVTRPINWRYMQK-GISVWLDVPLEALAQRIAAVGTDSRPLL 178
++ KL V+STGGG N ++K G +V+L VPLE L +R+ D+RPLL
Sbjct: 63 IINKLKKESNKVISTGGGLPIYNKNIYELKKIGFTVYLKVPLEELIKRMVKKEDDARPLL 122
Query: 179 HQCESGDAYTEALNRLSTLWEERGEAYANANA 210
++ L +++ R E Y A+
Sbjct: 123 KNDDT--------KFLEEMYKNRIEIYEKAHT 146
>sp|B1IMQ2|AROK_CLOBK Shikimate kinase OS=Clostridium botulinum (strain Okra / Type B1)
GN=aroK PE=3 SV=1
Length = 170
Score = 107 bits (268), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 86/152 (56%), Gaps = 10/152 (6%)
Query: 60 IYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETE 119
I L+GM SGK+T+G+ LS +L Y D DTLIE+ D S+ EIFK+YGE +FREKE E
Sbjct: 4 IVLIGMPLSGKSTLGRELSKILKYDLIDTDTLIEEMED-KSIKEIFKIYGEDYFREKELE 62
Query: 120 VLQKLSLMRQLVVSTGGGAVTRPIN-WRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLL 178
++ KL V+STGGG N + G +V+L VPLE L +R+ D+RPLL
Sbjct: 63 IINKLKKESNKVISTGGGLPIYNKNIYELKNIGFTVYLKVPLEELIKRMVKKEYDTRPLL 122
Query: 179 HQCESGDAYTEALNRLSTLWEERGEAYANANA 210
++ L +++ R E Y A+
Sbjct: 123 KNNDT--------KFLEEMYKNRIEIYEKAHT 146
>sp|B2V895|AROK_SULSY Shikimate kinase OS=Sulfurihydrogenibium sp. (strain YO3AOP1)
GN=aroK PE=3 SV=1
Length = 166
Score = 105 bits (262), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 86/157 (54%), Gaps = 13/157 (8%)
Query: 58 RCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKE 117
+ IYLVG MGSGK+TVGKIL+ L F D D LIE+ +G + +IF+ GE +FRE E
Sbjct: 2 KNIYLVGFMGSGKSTVGKILAEKLNMKFVDIDKLIEEK-EGMKIKDIFEQKGESYFRELE 60
Query: 118 TEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQK-GISVWLDVPLEALAQRIAAVGTDSRP 176
+ ++ + LVVSTGGG N M+K G VWLDV L + R+ RP
Sbjct: 61 RKQIEAIVNQEGLVVSTGGGLGANLNNMNLMKKNGDVVWLDVSLNTVLDRLK--NDQDRP 118
Query: 177 LLHQCESGDAYTEALNRLSTLWEERGEAYANANARVS 213
LL Q + ++ L+EER Y AN R++
Sbjct: 119 LLKQ---------PIEKIKQLFEERKNVYRLANIRIN 146
>sp|Q74BL5|AROK_GEOSL Shikimate kinase OS=Geobacter sulfurreducens (strain ATCC 51573 /
DSM 12127 / PCA) GN=aroK PE=3 SV=1
Length = 175
Score = 103 bits (258), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 90/157 (57%), Gaps = 11/157 (7%)
Query: 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREK 116
GR + L G MG+GK+TVGK+L+ LGY F D D LI + G S+ EIF+ YGE FRE
Sbjct: 7 GRNVVLTGFMGTGKSTVGKLLARRLGYRFSDLDALIVERA-GISINEIFERYGEQRFREL 65
Query: 117 ETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQK-GISVWLDVPLEALAQRIAAVGTDSR 175
ETE ++ L + VV+TGGGAV P N +++ G+ V L LE + R+ G R
Sbjct: 66 ETEAIRSLGGVSGRVVATGGGAVIAPRNRVLLREAGLVVNLTASLEVILSRLK--GDRER 123
Query: 176 PLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212
PLL + +A L+ L R AYA+A+ R+
Sbjct: 124 PLLKSNNTPEA-------LAALMTARENAYADADLRI 153
>sp|Q2RI74|AROK_MOOTA Shikimate kinase OS=Moorella thermoacetica (strain ATCC 39073)
GN=aroK PE=3 SV=1
Length = 173
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 80/127 (62%), Gaps = 4/127 (3%)
Query: 60 IYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETE 119
I L+G MGSGKTTVG++L+ LG+SF D DT++E+ + G V EIF GE FFRE E E
Sbjct: 5 IVLIGFMGSGKTTVGRLLARDLGWSFLDTDTMVEERL-GLPVKEIFAREGEEFFREVEKE 63
Query: 120 VLQKLSLMRQLVVSTGGGAVTRPINWRYMQKGIS-VWLDVPLEALAQRIAAVGTDSRPLL 178
+ +++ RQ V++TGGGAV +N + +++G VWL V E +R DSRPLL
Sbjct: 64 AVARVATARQAVIATGGGAVLCGVNVKLLREGNKVVWLQVRPETALKRAGL--DDSRPLL 121
Query: 179 HQCESGD 185
E D
Sbjct: 122 QGREPRD 128
>sp|O67925|AROK_AQUAE Shikimate kinase OS=Aquifex aeolicus (strain VF5) GN=aroK PE=1 SV=1
Length = 168
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 89/158 (56%), Gaps = 13/158 (8%)
Query: 60 IYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETE 119
IYL+G M SGK+TVG +LS L F+D D + Q +G S+ +IF+ GE +FR+ E E
Sbjct: 3 IYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEV-QKREGLSIPQIFEKKGEAYFRKLEFE 61
Query: 120 VLQKLSLMRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLL 178
VL+ LS +V+STGGG +M+ +G +V++D+P E +R + RPLL
Sbjct: 62 VLKDLSEKENVVISTGGGLGANEEALNFMKSRGTTVFIDIPFEVFLERCK--DSKERPLL 119
Query: 179 HQCESGDAYTEALNRLSTLWEERGEAYANANARVSLEN 216
+ L+ + L+EER + Y+ A+ +V E
Sbjct: 120 KR---------PLDEIKNLFEERRKIYSKADIKVKGEK 148
>sp|Q3JEG4|AROK_NITOC Shikimate kinase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB
11848) GN=aroK PE=3 SV=1
Length = 190
Score = 98.2 bits (243), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 106/187 (56%), Gaps = 22/187 (11%)
Query: 60 IYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETE 119
I+LVG MGSGKTT+G+ L+ + G +F+D D IE S G S+ IF++ GE FR++E +
Sbjct: 6 IFLVGPMGSGKTTIGRYLARITGKNFYDSDREIE-SRTGVSIPVIFEIEGESGFRQRECK 64
Query: 120 VLQKLSLMRQLVVSTGGGAVTRPINWRYM-QKGISVWLDVPLEALAQRIAAVGTDSRPLL 178
++ +L + +V++TGGGAV N R + Q+GI V+L P + L +R + ++RPLL
Sbjct: 65 IIAELVQLNNIVLATGGGAVLAAENRRELSQRGIVVYLYAPPKQLYRRTSH--DNNRPLL 122
Query: 179 HQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEA 238
+G+ L RL L +ER Y + ++ +K G + V + +A E
Sbjct: 123 R---TGN----PLERLKCLLKERDPLYR------EVADVIIKTGKQPVKA-----VANEV 164
Query: 239 LEQIEGF 245
L Q+ +
Sbjct: 165 LRQLRQY 171
>sp|Q6G1N9|AROK_BARHE Shikimate kinase OS=Bartonella henselae (strain ATCC 49882 /
Houston 1) GN=aroK PE=3 SV=1
Length = 210
Score = 98.2 bits (243), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 110/218 (50%), Gaps = 29/218 (13%)
Query: 35 HAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQ 94
H PI + +KN ++ L R + L+G+MG GK+ +GK ++ +L F+D D IE+
Sbjct: 8 HIPITK---IKN---QLLSSLDNRALVLIGLMGVGKSVIGKRIATMLCLPFYDSDQEIEK 61
Query: 95 SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGA-VTRPINWRYMQKGIS 153
+ T + E+FK YGE FR E V+ L R LV++TGGGA + I + GIS
Sbjct: 62 AAQMT-ITELFKTYGESEFRALEQRVILNLMKNRPLVLATGGGAYINEDIRKAVHKNGIS 120
Query: 154 VWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVS 213
+WL V L+ L QR++ T RPLL Q E+ + L ++R YA AN ++
Sbjct: 121 IWLKVDLDTLMQRVSKRPT--RPLL-QTENPKET------MQKLMKQRYPIYAKANLTIN 171
Query: 214 LENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLKEEDD 251
HK+ T+A + ++ +L E +
Sbjct: 172 --------SHKENRQ----TVAQNVIRSVQHYLDTEKN 197
>sp|Q6G1H5|AROK_BARQU Shikimate kinase OS=Bartonella quintana (strain Toulouse) GN=aroK
PE=3 SV=1
Length = 210
Score = 98.2 bits (243), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 98/182 (53%), Gaps = 21/182 (11%)
Query: 35 HAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQ 94
H PI + + +++ L R + LVG+MG+GK+ +GK ++ +LG F+D D IE+
Sbjct: 8 HIPITQIK------KQLLSSLDKRALVLVGLMGAGKSVIGKRIATMLGLPFYDSDQEIEK 61
Query: 95 SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQ--LVVSTGGGA-VTRPINWRYMQKG 151
+ T + E FK+YGE FR E V LSLM++ LV++TGGGA + I + G
Sbjct: 62 AAQMT-ITEFFKVYGESEFRALEQHV--TLSLMKKSPLVLATGGGAYINEDIRQVINKNG 118
Query: 152 ISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANAR 211
IS+WL L+ L +R++ T RPLL + + L E+R YA AN
Sbjct: 119 ISIWLKADLDILMKRVSRHPT--RPLLQTANPKET-------MKKLMEQRYPIYAKANLT 169
Query: 212 VS 213
++
Sbjct: 170 IN 171
>sp|Q2W095|AROK_MAGSA Shikimate kinase OS=Magnetospirillum magneticum (strain AMB-1 /
ATCC 700264) GN=aroK PE=3 SV=1
Length = 195
Score = 97.8 bits (242), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 93/172 (54%), Gaps = 14/172 (8%)
Query: 42 QVLKNKSQEIEPYLSGR---CIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDG 98
Q + ++ + P LSGR I LVG+MG+GK+ VG+ L+ LG F D D E + G
Sbjct: 3 QGMADELARLAPLLSGRIGRTIVLVGLMGAGKSCVGRRLAARLGLDFVDSDAEFE-AASG 61
Query: 99 TSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPINW-RYMQKGISVWLD 157
+S+++ F +GE FRE E +V+ +L +V++TGGGA P R G SVW+
Sbjct: 62 SSISDYFARFGEAAFREGERKVIARLLDGPPVVLATGGGAFVDPTTRERIKAAGTSVWIR 121
Query: 158 VPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN 209
LE L +R VG D RPLL Q GD E L R L E R YA A+
Sbjct: 122 ADLELLLKR--TVGRDHRPLLKQ---GDP-REILGR---LMEARYPIYAEAD 164
>sp|Q1Q8Q8|AROK_PSYCK Shikimate kinase OS=Psychrobacter cryohalolentis (strain K5)
GN=aroK PE=3 SV=1
Length = 186
Score = 97.8 bits (242), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 77/123 (62%), Gaps = 4/123 (3%)
Query: 59 CIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKET 118
++LVG MG+GKTT+G++L+ LG SF D D IE S G +A IF GE FRE+ET
Sbjct: 7 SVFLVGPMGAGKTTIGRLLAKQLGRSFVDSDWYIE-SQTGADIAWIFAKEGEAGFRERET 65
Query: 119 EVLQKLSLMRQLVVSTGGGAVTRPINWRYM-QKGISVWLDVPLEALAQRIAAVGTDSRPL 177
+ +L+ Q+V++TGGGAV N Y+ Q+GI ++L+ P++ R A SRPL
Sbjct: 66 RAIDELTQQPQIVLATGGGAVMAAENREYLKQRGIVIYLNAPVDVQMARTAK--DKSRPL 123
Query: 178 LHQ 180
L Q
Sbjct: 124 LQQ 126
>sp|Q3J2I9|AROK_RHOS4 Shikimate kinase OS=Rhodobacter sphaeroides (strain ATCC 17023 /
2.4.1 / NCIB 8253 / DSM 158) GN=aroK PE=3 SV=1
Length = 181
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 92/170 (54%), Gaps = 16/170 (9%)
Query: 58 RCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKE 117
+ + +VGMMG+GKT VG L+ L F D D IE++ + T +AEIF GE FFREKE
Sbjct: 7 KTVVMVGMMGAGKTAVGSALARGLNVPFLDSDEEIERAANRT-IAEIFARDGEPFFREKE 65
Query: 118 TEVLQKLSLMRQLVVSTGGGAVTRPINWRYM-QKGISVWLDVPLEALAQRIAAVGTDSRP 176
++VL +L V+STGGGA N R + ++G+SVWL L+ L R+ T RP
Sbjct: 66 SQVLARLLRGSPCVLSTGGGAFMAEGNRRMIREQGVSVWLKADLDVLWHRVRHKAT--RP 123
Query: 177 LLHQCESGDAYTEALNRLSTLWEERGEAYANANARV-----SLENIAVKL 221
LL + L L E R YA A+ V ++E +AV++
Sbjct: 124 LLRTPNPRET-------LRALLEARDPVYAQADLAVESGEGTVEQMAVRV 166
>sp|Q6F7E4|AROK_ACIAD Shikimate kinase OS=Acinetobacter sp. (strain ADP1) GN=aroK PE=3
SV=1
Length = 180
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 87/149 (58%), Gaps = 11/149 (7%)
Query: 60 IYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETE 119
IYLVG MG+GKTTVG+ L+ +LG F D D IE+ G ++ IF+ GE FR +ET
Sbjct: 12 IYLVGPMGAGKTTVGRHLAELLGREFLDSDHEIERRT-GATIPWIFEKEGEIGFRSRETI 70
Query: 120 VLQKLSLMRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLL 178
VL L+ R LV++TGGG VT+P N Y++ +G+ V+L P+E QR +RPLL
Sbjct: 71 VLDDLTSRRDLVLATGGGVVTQPANRSYLKTRGVVVYLYTPVELQLQR--TYRDKNRPLL 128
Query: 179 HQCESGDAYTEALNRLSTLWEERGEAYAN 207
Q E+ + RL L + R Y +
Sbjct: 129 -QVENPE------QRLRDLLKLRDPLYRD 150
>sp|Q39X05|AROK_GEOMG Shikimate kinase OS=Geobacter metallireducens (strain GS-15 / ATCC
53774 / DSM 7210) GN=aroK PE=3 SV=1
Length = 168
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 92/156 (58%), Gaps = 11/156 (7%)
Query: 58 RCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKE 117
R + L G MG+GK++VG++L+ LG+ + D D LI + +G S+ EIF +GE FR E
Sbjct: 2 RNVILTGFMGTGKSSVGRLLAHRLGFRYCDLDALIVEG-EGVSINEIFARHGEPHFRALE 60
Query: 118 TEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQK-GISVWLDVPLEALAQRIAAVGTDSRP 176
TE ++ +S + VVSTGGGAV P N ++K G+ V L +E + +R+ TD RP
Sbjct: 61 TEAVRSVSREERCVVSTGGGAVISPENRCLLRKAGVVVNLTATVEEVCRRLRE-ETD-RP 118
Query: 177 LLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212
LL SG+ R++ + ER + YA+A R+
Sbjct: 119 LLKDDRSGE-------RIAAMMAEREQFYADAELRI 147
>sp|Q4FQI2|AROK_PSYA2 Shikimate kinase OS=Psychrobacter arcticus (strain DSM 17307 /
273-4) GN=aroK PE=3 SV=1
Length = 186
Score = 94.7 bits (234), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 77/122 (63%), Gaps = 4/122 (3%)
Query: 60 IYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETE 119
++LVG MG+GKTT+G++L+ LG +F D D +E S G +A IF GE FRE+ET
Sbjct: 8 VFLVGPMGAGKTTIGRLLAKQLGRTFVDSDWYVE-SQTGADIAWIFDKEGEAGFRERETR 66
Query: 120 VLQKLSLMRQLVVSTGGGAVTRPINWRYM-QKGISVWLDVPLEALAQRIAAVGTDSRPLL 178
+ +L+ Q+V++TGGGAV N ++ Q+GI ++L+ P++ R A SRPLL
Sbjct: 67 AIDELTQQPQIVLATGGGAVMAAENREFLKQRGIVIYLNAPVDVQMARTAK--DKSRPLL 124
Query: 179 HQ 180
Q
Sbjct: 125 QQ 126
>sp|Q3AR93|AROK_CHLCH Shikimate kinase OS=Chlorobium chlorochromatii (strain CaD3)
GN=aroK PE=3 SV=1
Length = 190
Score = 94.7 bits (234), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 98/174 (56%), Gaps = 13/174 (7%)
Query: 52 EPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEG 111
EP L I+L G GSGK+T+G +L+ LGY F D D LIE+ G S+ +IF GE
Sbjct: 4 EPSL----IFLTGFSGSGKSTIGPLLANSLGYEFVDLDALIEREC-GKSINQIFAEAGEA 58
Query: 112 FFREKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYM-QKGISVWLDVPLEALAQRIAAV 170
FR+ E + L+ L + R+ VVS GGG + +P + + Q G V+L P++ LA+R++
Sbjct: 59 AFRQHEEQTLETLLMRRKTVVSLGGGVLEQPRAFELVRQAGTVVYLKSPVKTLARRLS-- 116
Query: 171 GTDSRPLLHQCESGDAYT--EALNRLSTLWEERGEAYANANARVSLENIAVKLG 222
RPLL + E G+ + E +++ L R Y A+ +++E A ++G
Sbjct: 117 NKTDRPLL-KGEQGEKLSQEEIEQKIAELLARREPRYECAD--ITVETDAKRIG 167
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,658,354
Number of Sequences: 539616
Number of extensions: 3632918
Number of successful extensions: 19015
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 397
Number of HSP's that attempted gapping in prelim test: 17724
Number of HSP's gapped (non-prelim): 986
length of query: 257
length of database: 191,569,459
effective HSP length: 115
effective length of query: 142
effective length of database: 129,513,619
effective search space: 18390933898
effective search space used: 18390933898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)