Query 025114
Match_columns 257
No_of_seqs 364 out of 2480
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 02:48:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025114.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025114hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1120 FepC ABC-type cobalami 100.0 1.8E-40 3.9E-45 285.3 3.8 192 27-224 1-239 (258)
2 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 9.4E-39 2E-43 273.5 7.2 191 26-224 2-238 (254)
3 COG1126 GlnQ ABC-type polar am 100.0 1.4E-37 3.1E-42 257.4 5.1 180 27-212 1-224 (240)
4 COG1125 OpuBA ABC-type proline 100.0 2.8E-36 6E-41 254.9 4.1 181 28-214 1-226 (309)
5 COG3638 ABC-type phosphate/pho 100.0 9.6E-36 2.1E-40 249.3 6.8 191 26-223 1-246 (258)
6 COG4559 ABC-type hemin transpo 100.0 5.3E-35 1.1E-39 241.2 7.5 192 28-225 1-242 (259)
7 COG0411 LivG ABC-type branched 100.0 2.9E-35 6.2E-40 247.9 3.0 191 26-222 2-248 (250)
8 COG3842 PotA ABC-type spermidi 100.0 8.7E-35 1.9E-39 260.2 6.0 182 26-213 3-226 (352)
9 COG1127 Ttg2A ABC-type transpo 100.0 6.1E-35 1.3E-39 245.1 4.4 185 25-215 5-237 (263)
10 COG4604 CeuD ABC-type enteroch 100.0 1.3E-34 2.8E-39 236.5 3.4 190 28-223 1-235 (252)
11 COG3839 MalK ABC-type sugar tr 100.0 6.3E-34 1.4E-38 253.4 6.0 181 26-212 1-222 (338)
12 COG1116 TauB ABC-type nitrate/ 100.0 1.3E-33 2.9E-38 239.3 7.7 167 27-199 2-206 (248)
13 PLN02199 shikimate kinase 100.0 7.6E-32 1.6E-36 235.2 17.7 238 14-255 62-299 (303)
14 COG1124 DppF ABC-type dipeptid 100.0 2.7E-33 5.9E-38 235.8 7.6 181 26-212 1-230 (252)
15 COG1118 CysA ABC-type sulfate/ 100.0 2.1E-33 4.5E-38 243.0 5.0 190 27-222 1-236 (345)
16 COG1117 PstB ABC-type phosphat 100.0 1.4E-32 3.1E-37 227.0 8.1 183 25-214 4-238 (253)
17 PRK09536 btuD corrinoid ABC tr 100.0 2.6E-33 5.7E-38 257.3 4.1 192 26-223 1-238 (402)
18 COG1135 AbcC ABC-type metal io 100.0 1.2E-32 2.6E-37 238.7 6.6 180 28-213 1-231 (339)
19 COG1137 YhbG ABC-type (unclass 100.0 3.2E-33 7E-38 228.7 -1.7 194 26-225 2-240 (243)
20 PRK11432 fbpC ferric transport 100.0 5.2E-32 1.1E-36 245.4 2.9 183 24-212 2-225 (351)
21 PRK11650 ugpC glycerol-3-phosp 100.0 7.2E-32 1.6E-36 245.0 2.9 181 26-212 1-223 (356)
22 COG2884 FtsE Predicted ATPase 100.0 1.4E-31 3.1E-36 217.5 3.7 153 28-183 1-199 (223)
23 COG0410 LivF ABC-type branched 100.0 7.7E-32 1.7E-36 225.5 2.1 190 26-221 1-234 (237)
24 COG4555 NatA ABC-type Na+ tran 100.0 5.5E-32 1.2E-36 221.7 1.0 176 28-209 1-218 (245)
25 COG1131 CcmA ABC-type multidru 100.0 1.2E-31 2.6E-36 237.6 2.5 179 26-210 2-223 (293)
26 TIGR03265 PhnT2 putative 2-ami 100.0 1.5E-31 3.3E-36 242.6 3.1 182 26-213 2-224 (353)
27 PRK13537 nodulation ABC transp 100.0 1.5E-31 3.2E-36 238.6 2.5 181 25-211 4-225 (306)
28 COG1136 SalX ABC-type antimicr 100.0 9.2E-31 2E-35 221.2 6.7 167 28-201 1-219 (226)
29 PRK13536 nodulation factor exp 100.0 2E-31 4.2E-36 240.7 2.8 180 26-211 39-259 (340)
30 COG4152 ABC-type uncharacteriz 100.0 1.2E-30 2.7E-35 219.4 5.5 177 27-209 1-215 (300)
31 PRK10851 sulfate/thiosulfate t 100.0 4.9E-31 1.1E-35 239.2 2.7 180 27-212 1-225 (353)
32 PRK09452 potA putrescine/sperm 100.0 5.3E-31 1.1E-35 240.5 2.8 182 25-212 11-233 (375)
33 TIGR02314 ABC_MetN D-methionin 100.0 6.9E-31 1.5E-35 237.1 2.6 179 28-212 1-229 (343)
34 COG1122 CbiO ABC-type cobalt t 100.0 9.1E-31 2E-35 224.2 2.7 180 27-212 2-227 (235)
35 PRK11000 maltose/maltodextrin 100.0 8.7E-31 1.9E-35 239.1 2.6 181 26-212 1-222 (369)
36 cd03261 ABC_Org_Solvent_Resist 100.0 1.2E-30 2.6E-35 224.2 3.0 175 29-209 1-222 (235)
37 TIGR00960 3a0501s02 Type II (G 100.0 5.3E-30 1.1E-34 217.5 6.8 158 28-188 1-205 (216)
38 TIGR02315 ABC_phnC phosphonate 100.0 3.1E-30 6.6E-35 222.6 5.2 175 28-208 1-230 (243)
39 TIGR01288 nodI ATP-binding ABC 100.0 1.5E-30 3.2E-35 231.9 2.6 178 27-210 3-221 (303)
40 cd03296 ABC_CysA_sulfate_impor 100.0 2E-30 4.3E-35 223.5 3.3 175 28-208 2-221 (239)
41 TIGR03258 PhnT 2-aminoethylpho 100.0 1.5E-30 3.2E-35 236.7 2.4 179 28-212 5-227 (362)
42 PRK11231 fecE iron-dicitrate t 100.0 4.1E-30 8.9E-35 223.6 4.6 189 28-222 2-236 (255)
43 PRK11607 potG putrescine trans 100.0 2.6E-30 5.6E-35 236.2 3.4 182 25-212 16-238 (377)
44 PRK10895 lipopolysaccharide AB 100.0 3.3E-30 7.1E-35 222.3 3.8 181 26-212 1-225 (241)
45 cd03218 ABC_YhbG The ABC trans 100.0 4.1E-30 8.8E-35 220.3 3.4 172 29-206 1-215 (232)
46 COG4608 AppF ABC-type oligopep 100.0 9.3E-30 2E-34 218.4 5.6 168 26-213 2-199 (268)
47 PRK10575 iron-hydroxamate tran 100.0 7.4E-30 1.6E-34 223.3 5.0 192 25-222 8-246 (265)
48 PRK11614 livF leucine/isoleuci 100.0 4.5E-30 9.7E-35 220.9 3.4 180 26-211 3-224 (237)
49 PRK13638 cbiO cobalt transport 100.0 5.2E-30 1.1E-34 225.0 3.4 189 28-222 1-234 (271)
50 cd03256 ABC_PhnC_transporter A 100.0 6.9E-30 1.5E-34 220.0 4.1 169 29-203 1-224 (241)
51 cd03219 ABC_Mj1267_LivG_branch 100.0 5.5E-30 1.2E-34 220.1 2.9 169 29-203 1-222 (236)
52 PRK15079 oligopeptide ABC tran 100.0 7.5E-30 1.6E-34 229.7 3.9 182 25-212 5-250 (331)
53 PRK13548 hmuV hemin importer A 100.0 8.7E-30 1.9E-34 222.0 4.2 177 28-210 2-227 (258)
54 cd03265 ABC_DrrA DrrA is the A 100.0 6.7E-30 1.5E-34 217.5 3.2 168 29-202 1-210 (220)
55 cd03259 ABC_Carb_Solutes_like 100.0 6.5E-30 1.4E-34 216.5 3.0 164 29-198 1-205 (213)
56 PRK11264 putative amino-acid A 100.0 1.1E-29 2.3E-34 220.2 4.3 175 27-207 2-227 (250)
57 PRK11022 dppD dipeptide transp 100.0 9.2E-30 2E-34 228.8 4.0 181 26-212 1-242 (326)
58 TIGR02673 FtsE cell division A 100.0 3.1E-29 6.7E-34 212.4 6.8 158 28-188 1-204 (214)
59 TIGR03411 urea_trans_UrtD urea 100.0 1.1E-29 2.3E-34 219.2 4.1 176 27-209 1-227 (242)
60 PRK09984 phosphonate/organopho 100.0 1.2E-29 2.5E-34 221.6 4.3 177 27-209 3-238 (262)
61 PRK15093 antimicrobial peptide 100.0 5.7E-30 1.2E-34 230.6 2.4 181 26-212 1-247 (330)
62 COG1129 MglA ABC-type sugar tr 100.0 1.3E-29 2.8E-34 234.7 4.7 174 25-204 5-225 (500)
63 COG3840 ThiQ ABC-type thiamine 100.0 2E-29 4.3E-34 203.8 4.8 178 28-213 1-219 (231)
64 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 4.3E-29 9.3E-34 212.1 7.1 162 29-197 1-213 (218)
65 PRK11300 livG leucine/isoleuci 100.0 1.3E-29 2.9E-34 220.2 4.1 178 27-210 4-240 (255)
66 PRK13547 hmuV hemin importer A 100.0 1.3E-29 2.9E-34 222.5 4.1 189 28-222 1-253 (272)
67 PRK13647 cbiO cobalt transport 100.0 1.3E-29 2.8E-34 222.9 3.9 177 27-209 3-223 (274)
68 PRK11308 dppF dipeptide transp 100.0 1.3E-29 2.7E-34 228.0 3.9 183 25-213 2-244 (327)
69 PRK11247 ssuB aliphatic sulfon 100.0 1.8E-29 3.8E-34 220.0 4.6 173 26-204 10-214 (257)
70 PRK10253 iron-enterobactin tra 100.0 1.7E-29 3.8E-34 220.9 4.4 192 25-222 4-242 (265)
71 PRK09700 D-allose transporter 100.0 1.5E-29 3.2E-34 240.3 4.2 191 26-222 3-243 (510)
72 cd03301 ABC_MalK_N The N-termi 100.0 1.5E-29 3.3E-34 214.1 3.8 165 29-199 1-206 (213)
73 PRK13652 cbiO cobalt transport 100.0 1.6E-29 3.4E-34 222.6 4.0 183 26-214 1-228 (277)
74 PRK11153 metN DL-methionine tr 100.0 9.1E-30 2E-34 230.4 2.6 178 28-211 1-228 (343)
75 cd03269 ABC_putative_ATPase Th 100.0 2E-29 4.3E-34 213.0 4.5 165 29-199 1-203 (210)
76 PRK09493 glnQ glutamine ABC tr 100.0 1.2E-29 2.7E-34 218.6 3.2 176 28-209 1-221 (240)
77 PRK13643 cbiO cobalt transport 100.0 1.2E-29 2.6E-34 224.6 3.1 181 28-214 1-234 (288)
78 PRK14242 phosphate transporter 100.0 2.4E-29 5.3E-34 218.4 4.6 178 25-209 3-233 (253)
79 PRK11831 putative ABC transpor 100.0 1.8E-29 4E-34 221.3 3.8 178 26-209 5-229 (269)
80 TIGR03522 GldA_ABC_ATP gliding 100.0 1.2E-29 2.6E-34 225.9 2.5 175 28-209 2-217 (301)
81 cd03258 ABC_MetN_methionine_tr 100.0 1.8E-29 4E-34 216.5 3.3 170 28-203 1-220 (233)
82 cd03266 ABC_NatA_sodium_export 100.0 2.3E-29 4.9E-34 213.8 3.5 166 28-199 1-211 (218)
83 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 2.4E-29 5.2E-34 216.3 3.7 172 28-206 1-214 (236)
84 COG4598 HisP ABC-type histidin 100.0 3.6E-29 7.8E-34 202.1 4.4 182 25-212 3-240 (256)
85 TIGR03873 F420-0_ABC_ATP propo 100.0 2.6E-29 5.6E-34 218.7 3.8 188 29-222 2-235 (256)
86 PRK14247 phosphate ABC transpo 100.0 3.1E-29 6.7E-34 217.3 4.2 178 26-210 1-231 (250)
87 PRK13549 xylose transporter AT 100.0 3.5E-29 7.5E-34 237.5 4.6 191 26-222 3-241 (506)
88 cd03225 ABC_cobalt_CbiO_domain 100.0 5.9E-29 1.3E-33 210.2 5.4 156 30-188 1-201 (211)
89 cd03226 ABC_cobalt_CbiO_domain 100.0 1.7E-29 3.7E-34 212.8 1.9 156 30-188 1-193 (205)
90 PRK10762 D-ribose transporter 100.0 4E-29 8.7E-34 236.8 4.7 179 27-211 3-228 (501)
91 PRK13651 cobalt transporter AT 100.0 2.3E-29 5E-34 224.3 2.8 182 28-215 2-256 (305)
92 PRK09544 znuC high-affinity zi 100.0 4.1E-29 8.8E-34 217.1 4.2 189 27-223 3-219 (251)
93 PRK13650 cbiO cobalt transport 100.0 4.5E-29 9.8E-34 219.9 4.5 181 27-214 3-230 (279)
94 PRK13637 cbiO cobalt transport 100.0 2.7E-29 5.9E-34 222.2 3.0 180 28-213 2-234 (287)
95 PRK10938 putative molybdenum t 100.0 2.5E-29 5.3E-34 237.6 2.9 181 27-215 2-226 (490)
96 cd03260 ABC_PstB_phosphate_tra 100.0 3.1E-29 6.8E-34 214.3 3.2 172 29-207 1-223 (227)
97 PRK13634 cbiO cobalt transport 99.9 3.3E-29 7.1E-34 222.0 3.4 180 28-213 2-235 (290)
98 PRK10619 histidine/lysine/argi 99.9 4.3E-29 9.4E-34 217.4 3.9 177 26-208 3-236 (257)
99 PRK13641 cbiO cobalt transport 99.9 3.6E-29 7.9E-34 221.4 3.4 179 28-212 2-233 (287)
100 cd03235 ABC_Metallic_Cations A 99.9 1.7E-28 3.6E-33 207.8 7.1 156 30-188 1-199 (213)
101 PRK13636 cbiO cobalt transport 99.9 4.5E-29 9.8E-34 220.3 3.6 184 27-216 4-234 (283)
102 PRK14250 phosphate ABC transpo 99.9 3.4E-29 7.3E-34 216.2 2.7 178 26-209 1-217 (241)
103 PRK11124 artP arginine transpo 99.9 5.3E-29 1.1E-33 214.9 3.9 170 28-203 2-220 (242)
104 cd03263 ABC_subfamily_A The AB 99.9 4.3E-29 9.4E-34 212.3 3.2 167 29-202 1-210 (220)
105 PRK13644 cbiO cobalt transport 99.9 4.6E-29 9.9E-34 219.4 3.3 180 28-214 1-225 (274)
106 cd03262 ABC_HisP_GlnQ_permease 99.9 1.1E-28 2.4E-33 208.7 5.4 157 29-188 1-202 (213)
107 PRK14267 phosphate ABC transpo 99.9 5.9E-29 1.3E-33 216.0 3.8 176 26-208 2-232 (253)
108 PRK15439 autoinducer 2 ABC tra 99.9 6E-29 1.3E-33 236.0 4.2 183 25-213 8-229 (510)
109 PRK13639 cbiO cobalt transport 99.9 5.7E-29 1.2E-33 218.9 3.7 183 28-216 1-229 (275)
110 PRK10908 cell division protein 99.9 1.5E-28 3.3E-33 209.4 6.2 165 28-198 1-211 (222)
111 PRK10070 glycine betaine trans 99.9 6.6E-29 1.4E-33 228.1 4.1 180 27-212 3-253 (400)
112 cd03224 ABC_TM1139_LivF_branch 99.9 4.9E-29 1.1E-33 212.2 3.0 168 29-202 1-210 (222)
113 PRK13646 cbiO cobalt transport 99.9 5E-29 1.1E-33 220.4 3.2 181 28-214 2-236 (286)
114 cd03268 ABC_BcrA_bacitracin_re 99.9 4.3E-29 9.4E-34 210.7 2.4 157 29-188 1-193 (208)
115 cd03292 ABC_FtsE_transporter F 99.9 1.6E-28 3.5E-33 207.8 5.9 157 29-188 1-203 (214)
116 PRK13635 cbiO cobalt transport 99.9 7.5E-29 1.6E-33 218.5 4.0 180 27-213 4-229 (279)
117 PRK13631 cbiO cobalt transport 99.9 9.6E-29 2.1E-33 221.6 4.6 186 25-216 18-268 (320)
118 PRK11248 tauB taurine transpor 99.9 7.5E-28 1.6E-32 209.6 9.7 165 28-198 1-203 (255)
119 PRK11144 modC molybdate transp 99.9 7.9E-29 1.7E-33 225.0 3.2 178 28-214 1-219 (352)
120 TIGR03005 ectoine_ehuA ectoine 99.9 7.8E-29 1.7E-33 215.1 2.9 174 29-208 1-231 (252)
121 cd03293 ABC_NrtD_SsuB_transpor 99.9 1.7E-28 3.6E-33 208.9 4.8 164 29-198 1-206 (220)
122 PRK15056 manganese/iron transp 99.9 1.5E-28 3.2E-33 215.9 4.5 188 27-221 5-238 (272)
123 COG4175 ProV ABC-type proline/ 99.9 2.4E-28 5.1E-33 212.3 5.6 183 26-214 2-255 (386)
124 COG1123 ATPase components of v 99.9 1.3E-28 2.9E-33 229.4 4.2 183 25-213 277-519 (539)
125 TIGR02211 LolD_lipo_ex lipopro 99.9 3.7E-28 8.1E-33 206.7 6.4 153 28-183 1-204 (221)
126 TIGR01188 drrA daunorubicin re 99.9 6.9E-29 1.5E-33 221.1 1.9 167 36-208 1-208 (302)
127 PRK13538 cytochrome c biogenes 99.9 2.8E-27 6E-32 199.3 11.5 156 28-186 1-194 (204)
128 cd03295 ABC_OpuCA_Osmoprotecti 99.9 1E-28 2.2E-33 213.2 2.7 170 29-204 1-216 (242)
129 PRK13640 cbiO cobalt transport 99.9 2E-28 4.3E-33 216.2 4.5 182 27-215 4-234 (282)
130 PRK13633 cobalt transporter AT 99.9 2.4E-28 5.2E-33 215.4 5.0 181 26-213 2-233 (280)
131 PRK14273 phosphate ABC transpo 99.9 2.3E-28 5E-33 212.4 4.6 177 26-209 5-234 (254)
132 COG0444 DppD ABC-type dipeptid 99.9 1.1E-28 2.3E-33 216.0 2.5 180 28-213 1-243 (316)
133 TIGR01978 sufC FeS assembly AT 99.9 1.7E-28 3.6E-33 211.7 3.7 169 29-203 1-224 (243)
134 PRK09473 oppD oligopeptide tra 99.9 1.5E-28 3.2E-33 221.3 3.5 182 25-212 9-250 (330)
135 COG4525 TauB ABC-type taurine 99.9 1.5E-27 3.3E-32 194.9 9.0 160 26-188 1-200 (259)
136 PRK14245 phosphate ABC transpo 99.9 1.6E-28 3.4E-33 213.0 3.5 179 27-212 2-233 (250)
137 PRK13632 cbiO cobalt transport 99.9 2.6E-28 5.7E-33 214.2 4.9 189 26-221 5-239 (271)
138 PRK10771 thiQ thiamine transpo 99.9 1.4E-28 3E-33 211.1 3.0 177 28-212 1-218 (232)
139 TIGR02769 nickel_nikE nickel i 99.9 2.5E-28 5.5E-33 213.6 4.7 177 28-210 2-237 (265)
140 TIGR03410 urea_trans_UrtE urea 99.9 9.3E-29 2E-33 211.7 1.9 169 29-203 1-211 (230)
141 TIGR03740 galliderm_ABC gallid 99.9 1.1E-28 2.3E-33 210.5 2.1 169 29-203 1-203 (223)
142 PRK14270 phosphate ABC transpo 99.9 2.4E-28 5.1E-33 212.0 4.3 180 26-212 2-234 (251)
143 cd03257 ABC_NikE_OppD_transpor 99.9 2.7E-28 5.8E-33 208.4 4.5 167 28-200 1-222 (228)
144 COG0703 AroK Shikimate kinase 99.9 4.7E-26 1E-30 184.4 17.3 168 57-246 2-170 (172)
145 TIGR00972 3a0107s01c2 phosphat 99.9 1.7E-28 3.7E-33 212.4 3.3 175 28-209 1-228 (247)
146 PRK14269 phosphate ABC transpo 99.9 1.8E-28 3.8E-33 212.3 3.1 175 27-208 1-225 (246)
147 PRK14256 phosphate ABC transpo 99.9 2.6E-28 5.6E-33 211.9 4.1 178 27-211 3-234 (252)
148 PRK10744 pstB phosphate transp 99.9 1.9E-28 4.1E-33 213.8 3.2 177 26-209 11-240 (260)
149 PRK13649 cbiO cobalt transport 99.9 2.3E-28 4.9E-33 215.5 3.7 180 28-213 2-234 (280)
150 PRK14239 phosphate transporter 99.9 2.7E-28 5.9E-33 211.6 3.8 180 26-212 3-235 (252)
151 cd03231 ABC_CcmA_heme_exporter 99.9 2.8E-27 6E-32 198.9 9.6 157 29-188 1-192 (201)
152 PRK11629 lolD lipoprotein tran 99.9 5.1E-27 1.1E-31 201.5 11.4 153 27-182 4-207 (233)
153 TIGR01186 proV glycine betaine 99.9 1.4E-28 3E-33 223.5 1.7 172 36-213 1-219 (363)
154 PRK14235 phosphate transporter 99.9 3.3E-28 7.2E-33 213.1 4.0 176 25-207 16-245 (267)
155 cd03294 ABC_Pro_Gly_Bertaine T 99.9 1.2E-28 2.6E-33 216.2 1.2 173 30-208 26-245 (269)
156 PRK10584 putative ABC transpor 99.9 9.3E-28 2E-32 205.3 6.6 155 25-182 3-208 (228)
157 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 1.7E-28 3.6E-33 209.7 2.0 157 29-188 23-209 (224)
158 PRK14274 phosphate ABC transpo 99.9 2.8E-28 6.1E-33 212.5 3.4 178 26-210 10-240 (259)
159 PRK14268 phosphate ABC transpo 99.9 3E-28 6.5E-33 212.3 3.5 178 25-209 9-238 (258)
160 PRK10419 nikE nickel transport 99.9 5.5E-28 1.2E-32 211.8 5.1 181 26-212 1-240 (268)
161 cd03264 ABC_drug_resistance_li 99.9 2.9E-28 6.3E-33 206.1 3.0 155 29-188 1-196 (211)
162 PRK14248 phosphate ABC transpo 99.9 3.5E-28 7.6E-33 213.0 3.4 179 25-210 18-249 (268)
163 PRK13539 cytochrome c biogenes 99.9 9.1E-27 2E-31 196.6 11.9 153 28-183 2-189 (207)
164 PRK14261 phosphate ABC transpo 99.9 5.1E-28 1.1E-32 210.2 4.3 178 25-209 3-233 (253)
165 PRK14241 phosphate transporter 99.9 6.2E-28 1.3E-32 210.2 4.8 178 27-211 3-240 (258)
166 PRK11701 phnK phosphonate C-P 99.9 6.1E-28 1.3E-32 210.3 4.6 178 26-209 4-237 (258)
167 PRK13648 cbiO cobalt transport 99.9 1.1E-27 2.5E-32 209.9 6.2 181 26-213 5-231 (269)
168 PRK14265 phosphate ABC transpo 99.9 7.4E-28 1.6E-32 211.7 5.0 181 25-212 17-257 (274)
169 TIGR02633 xylG D-xylose ABC tr 99.9 6.8E-28 1.5E-32 228.3 5.0 178 28-211 1-228 (500)
170 PRK10261 glutathione transport 99.9 8.4E-28 1.8E-32 233.0 5.7 182 25-212 9-257 (623)
171 PRK14253 phosphate ABC transpo 99.9 5.2E-28 1.1E-32 209.5 3.7 177 26-209 1-229 (249)
172 PRK14262 phosphate ABC transpo 99.9 5.1E-28 1.1E-32 209.7 3.6 177 26-209 1-230 (250)
173 PRK15112 antimicrobial peptide 99.9 5.3E-28 1.1E-32 211.8 3.5 174 27-206 3-232 (267)
174 PRK14249 phosphate ABC transpo 99.9 6.5E-28 1.4E-32 209.2 4.1 178 26-210 2-232 (251)
175 PRK11288 araG L-arabinose tran 99.9 7.4E-28 1.6E-32 228.2 4.7 171 27-203 3-219 (501)
176 PRK14258 phosphate ABC transpo 99.9 8.7E-28 1.9E-32 209.8 4.7 180 27-212 6-244 (261)
177 PRK14237 phosphate transporter 99.9 8.3E-28 1.8E-32 210.6 4.4 179 26-211 18-249 (267)
178 PRK13543 cytochrome c biogenes 99.9 1.1E-26 2.4E-31 197.1 11.0 160 26-188 9-204 (214)
179 PRK10247 putative ABC transpor 99.9 4.5E-27 9.7E-32 200.9 8.5 157 25-184 4-201 (225)
180 COG1123 ATPase components of v 99.9 5.6E-28 1.2E-32 225.3 2.7 183 26-214 3-245 (539)
181 PRK14240 phosphate transporter 99.9 8.7E-28 1.9E-32 208.3 3.4 174 27-207 2-228 (250)
182 PRK14272 phosphate ABC transpo 99.9 1.2E-27 2.6E-32 207.5 4.3 177 27-210 3-233 (252)
183 PRK13645 cbiO cobalt transport 99.9 7.3E-28 1.6E-32 213.2 3.0 182 27-214 5-241 (289)
184 PRK14251 phosphate ABC transpo 99.9 1E-27 2.3E-32 207.9 3.5 175 27-208 3-230 (251)
185 cd03298 ABC_ThiQ_thiamine_tran 99.9 1.2E-27 2.6E-32 202.3 3.6 161 29-197 1-202 (211)
186 PRK10261 glutathione transport 99.9 1.1E-27 2.4E-32 232.3 3.7 181 26-212 311-552 (623)
187 PRK13549 xylose transporter AT 99.9 1.1E-27 2.3E-32 227.3 3.6 175 26-206 257-487 (506)
188 PRK14259 phosphate ABC transpo 99.9 1.8E-27 3.9E-32 208.7 4.7 168 25-199 10-228 (269)
189 cd03300 ABC_PotA_N PotA is an 99.9 8.5E-28 1.8E-32 206.3 2.4 172 29-206 1-213 (232)
190 PRK14236 phosphate transporter 99.9 2.1E-27 4.5E-32 208.6 4.7 180 25-211 22-254 (272)
191 PRK15134 microcin C ABC transp 99.9 1.3E-27 2.9E-32 227.8 3.6 181 26-212 3-245 (529)
192 PRK14275 phosphate ABC transpo 99.9 2.7E-27 5.9E-32 209.3 5.3 179 24-209 35-266 (286)
193 TIGR03269 met_CoM_red_A2 methy 99.9 2.1E-27 4.5E-32 226.0 4.9 174 29-208 1-253 (520)
194 PRK10982 galactose/methyl gala 99.9 1.2E-27 2.5E-32 226.3 2.9 175 31-211 1-221 (491)
195 TIGR02323 CP_lyasePhnK phospho 99.9 2E-27 4.3E-32 206.3 4.0 174 27-206 2-231 (253)
196 PRK15134 microcin C ABC transp 99.9 1.7E-27 3.7E-32 227.1 3.8 181 26-212 273-514 (529)
197 PRK14271 phosphate ABC transpo 99.9 2.1E-27 4.5E-32 209.1 3.9 178 25-209 18-247 (276)
198 PRK13540 cytochrome c biogenes 99.9 5.2E-26 1.1E-30 190.9 12.1 154 28-184 1-190 (200)
199 COG3845 ABC-type uncharacteriz 99.9 3.3E-27 7.1E-32 215.5 5.1 171 26-202 2-218 (501)
200 PRK14260 phosphate ABC transpo 99.9 3.3E-27 7.1E-32 205.8 5.0 178 26-210 5-240 (259)
201 PRK13642 cbiO cobalt transport 99.9 2.8E-27 6.1E-32 208.3 4.5 180 27-213 3-229 (277)
202 COG0396 sufC Cysteine desulfur 99.9 1.4E-25 3.1E-30 187.5 14.2 152 26-180 1-203 (251)
203 TIGR01189 ccmA heme ABC export 99.9 4.5E-26 9.7E-31 191.0 11.1 151 29-182 1-188 (198)
204 PRK14255 phosphate ABC transpo 99.9 2.7E-27 5.8E-32 205.5 3.8 178 27-211 4-234 (252)
205 TIGR03415 ABC_choXWV_ATP choli 99.9 9.6E-28 2.1E-32 219.1 1.0 176 32-213 28-254 (382)
206 TIGR02324 CP_lyasePhnL phospho 99.9 3.2E-26 7E-31 195.3 10.2 158 28-188 1-216 (224)
207 TIGR00968 3a0106s01 sulfate AB 99.9 1.7E-27 3.8E-32 205.0 2.4 173 29-207 1-214 (237)
208 TIGR02142 modC_ABC molybdenum 99.9 1.6E-27 3.5E-32 216.6 2.2 172 33-212 4-220 (354)
209 PRK14254 phosphate ABC transpo 99.9 4.1E-27 8.9E-32 208.1 4.6 174 26-206 37-262 (285)
210 TIGR03608 L_ocin_972_ABC putat 99.9 8.7E-26 1.9E-30 190.0 12.4 149 31-182 1-195 (206)
211 PRK14243 phosphate transporter 99.9 4.8E-27 1E-31 205.4 4.9 166 26-198 8-224 (264)
212 COG1119 ModF ABC-type molybden 99.9 2.4E-26 5.3E-31 194.0 8.9 172 25-202 28-251 (257)
213 CHL00131 ycf16 sulfate ABC tra 99.9 4.7E-27 1E-31 203.9 4.6 171 26-202 5-230 (252)
214 PRK10418 nikD nickel transport 99.9 3.6E-27 7.7E-32 205.1 3.8 173 28-207 4-224 (254)
215 PRK14246 phosphate ABC transpo 99.9 2.8E-27 6E-32 206.2 2.9 178 25-209 7-237 (257)
216 PRK14266 phosphate ABC transpo 99.9 3.7E-27 8E-32 204.4 3.7 176 26-208 1-229 (250)
217 cd03299 ABC_ModC_like Archeal 99.9 2.3E-27 5E-32 204.0 2.3 171 29-206 1-212 (235)
218 PRK14238 phosphate transporter 99.9 4.1E-27 9E-32 206.6 3.9 179 26-211 22-253 (271)
219 PRK14244 phosphate ABC transpo 99.9 5.5E-27 1.2E-31 203.4 4.5 174 29-209 6-233 (251)
220 PRK15064 ABC transporter ATP-b 99.9 4.8E-27 1E-31 224.1 4.3 169 28-202 1-230 (530)
221 PRK13545 tagH teichoic acids e 99.9 3E-27 6.5E-32 221.1 2.7 179 26-210 19-229 (549)
222 PRK09700 D-allose transporter 99.9 4.1E-27 8.8E-32 223.5 3.4 169 26-202 263-487 (510)
223 cd03214 ABC_Iron-Siderophores_ 99.9 1.9E-27 4.1E-32 196.6 0.7 145 30-188 1-165 (180)
224 TIGR01277 thiQ thiamine ABC tr 99.9 5.4E-27 1.2E-31 198.7 3.4 164 29-200 1-205 (213)
225 PRK03695 vitamin B12-transport 99.9 3E-27 6.6E-32 204.9 1.0 172 30-211 2-220 (248)
226 cd03245 ABCC_bacteriocin_expor 99.9 1E-26 2.2E-31 197.7 4.0 164 29-200 3-214 (220)
227 cd03251 ABCC_MsbA MsbA is an e 99.9 9.8E-27 2.1E-31 199.6 3.8 169 29-205 1-217 (234)
228 TIGR03269 met_CoM_red_A2 methy 99.9 9.6E-27 2.1E-31 221.5 3.8 170 26-201 277-505 (520)
229 PRK14257 phosphate ABC transpo 99.9 9E-27 2E-31 209.6 3.4 181 26-213 78-313 (329)
230 PRK09580 sufC cysteine desulfu 99.9 1E-26 2.3E-31 201.1 3.7 154 28-184 1-208 (248)
231 PRK15064 ABC transporter ATP-b 99.9 8.3E-27 1.8E-31 222.4 3.3 170 27-202 318-513 (530)
232 COG4181 Predicted ABC-type tra 99.9 6E-26 1.3E-30 182.0 7.5 170 26-202 4-224 (228)
233 PRK13541 cytochrome c biogenes 99.9 3.4E-25 7.4E-30 185.3 12.2 154 28-185 1-187 (195)
234 cd03289 ABCC_CFTR2 The CFTR su 99.9 1E-26 2.2E-31 204.4 3.1 177 29-213 3-225 (275)
235 cd03252 ABCC_Hemolysin The ABC 99.9 4.8E-27 1E-31 202.0 0.8 167 29-203 1-215 (237)
236 cd03254 ABCC_Glucan_exporter_l 99.9 7.1E-27 1.5E-31 199.9 1.7 166 29-202 3-215 (229)
237 PRK11819 putative ABC transpor 99.9 4.4E-26 9.4E-31 218.6 7.2 171 26-202 4-238 (556)
238 TIGR02982 heterocyst_DevA ABC 99.9 3.9E-26 8.5E-31 194.4 6.0 152 28-182 1-203 (220)
239 TIGR02633 xylG D-xylose ABC tr 99.9 2.6E-26 5.7E-31 217.5 5.2 170 26-201 255-480 (500)
240 COG4674 Uncharacterized ABC-ty 99.9 4.7E-27 1E-31 191.9 -0.0 189 27-222 4-244 (249)
241 TIGR01166 cbiO cobalt transpor 99.9 3.7E-25 8.1E-30 184.2 11.4 143 38-183 2-189 (190)
242 PRK14252 phosphate ABC transpo 99.9 3.2E-26 6.8E-31 200.3 4.5 177 25-208 13-244 (265)
243 PRK14264 phosphate ABC transpo 99.9 3.7E-26 8.1E-31 203.8 4.9 177 26-209 43-285 (305)
244 COG4161 ArtP ABC-type arginine 99.9 1E-25 2.2E-30 179.4 6.7 176 28-209 2-226 (242)
245 PRK10636 putative ABC transpor 99.9 2.4E-26 5.3E-31 223.3 3.9 169 28-202 1-224 (638)
246 cd03230 ABC_DR_subfamily_A Thi 99.9 2E-26 4.4E-31 189.3 2.7 141 29-188 1-162 (173)
247 PRK10636 putative ABC transpor 99.9 3.2E-26 7E-31 222.4 4.6 173 25-203 309-506 (638)
248 COG4586 ABC-type uncharacteriz 99.9 4E-26 8.7E-31 194.9 4.6 158 42-205 38-238 (325)
249 PRK15439 autoinducer 2 ABC tra 99.9 2.7E-26 5.9E-31 217.9 3.9 174 26-210 266-489 (510)
250 cd03234 ABCG_White The White s 99.9 5.2E-26 1.1E-30 194.4 5.1 168 28-201 3-221 (226)
251 cd03267 ABC_NatA_like Similar 99.9 2.3E-26 4.9E-31 198.0 2.8 159 36-200 29-230 (236)
252 PRK10938 putative molybdenum t 99.9 1.4E-25 3.1E-30 212.0 8.5 175 25-205 257-484 (490)
253 PRK14263 phosphate ABC transpo 99.9 5E-26 1.1E-30 198.7 4.9 165 26-197 6-221 (261)
254 PRK11147 ABC transporter ATPas 99.9 3.7E-26 8.1E-31 222.1 4.6 172 26-203 1-232 (635)
255 COG4172 ABC-type uncharacteriz 99.9 6.7E-26 1.4E-30 202.5 5.6 183 25-213 273-516 (534)
256 cd03297 ABC_ModC_molybdenum_tr 99.9 3.5E-26 7.7E-31 193.8 3.7 153 29-188 2-199 (214)
257 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 1.8E-26 3.9E-31 198.5 1.9 166 29-202 1-215 (238)
258 KOG0057 Mitochondrial Fe/S clu 99.9 4E-26 8.6E-31 210.3 4.0 178 28-212 351-573 (591)
259 cd03229 ABC_Class3 This class 99.9 2.7E-26 5.8E-31 189.4 2.3 147 29-184 1-164 (178)
260 cd03232 ABC_PDR_domain2 The pl 99.9 4.3E-26 9.3E-31 190.4 3.3 146 27-198 2-183 (192)
261 cd03216 ABC_Carb_Monos_I This 99.9 2E-26 4.4E-31 187.6 1.1 133 29-188 1-149 (163)
262 TIGR01184 ntrCD nitrate transp 99.9 5.9E-26 1.3E-30 194.7 3.9 162 44-211 1-202 (230)
263 cd03253 ABCC_ATM1_transporter 99.9 2.8E-26 6E-31 197.1 1.9 165 29-201 1-212 (236)
264 cd03215 ABC_Carb_Monos_II This 99.9 8.5E-26 1.8E-30 187.0 4.3 155 27-198 3-178 (182)
265 cd03244 ABCC_MRP_domain2 Domai 99.9 6.7E-26 1.4E-30 192.8 3.4 151 29-184 3-201 (221)
266 cd03248 ABCC_TAP TAP, the Tran 99.9 1.4E-25 3.1E-30 191.5 5.4 156 25-184 8-212 (226)
267 PRK10762 D-ribose transporter 99.9 7.3E-26 1.6E-30 214.6 3.7 171 26-207 255-478 (501)
268 TIGR01257 rim_protein retinal- 99.9 5.6E-26 1.2E-30 238.7 3.0 178 25-208 1934-2154(2272)
269 cd03213 ABCG_EPDR ABCG transpo 99.9 5.7E-26 1.2E-30 190.0 2.4 146 28-199 3-187 (194)
270 COG2274 SunT ABC-type bacterio 99.9 1.4E-25 3E-30 218.1 5.2 178 28-212 471-695 (709)
271 cd03369 ABCC_NFT1 Domain 2 of 99.9 1.4E-25 3E-30 189.2 4.2 150 27-184 5-187 (207)
272 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 7.7E-26 1.7E-30 222.5 2.7 179 27-212 476-699 (710)
273 PRK11288 araG L-arabinose tran 99.9 8.4E-26 1.8E-30 214.1 2.8 167 27-203 256-475 (501)
274 COG4619 ABC-type uncharacteriz 99.9 3.7E-25 8.1E-30 176.9 5.8 154 27-183 2-196 (223)
275 PRK13546 teichoic acids export 99.9 1.3E-25 2.9E-30 196.3 3.4 154 42-201 38-220 (264)
276 cd03246 ABCC_Protease_Secretio 99.9 1.2E-25 2.7E-30 184.6 2.9 134 29-182 1-157 (173)
277 PRK10982 galactose/methyl gala 99.9 1.5E-25 3.3E-30 211.9 3.6 170 26-203 248-470 (491)
278 cd03250 ABCC_MRP_domain1 Domai 99.9 2.9E-25 6.2E-30 186.9 4.8 151 29-183 1-190 (204)
279 PRK11147 ABC transporter ATPas 99.9 2.2E-25 4.7E-30 216.7 4.5 167 26-198 317-511 (635)
280 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 5.3E-25 1.1E-29 211.0 6.7 170 27-202 3-236 (552)
281 PLN03211 ABC transporter G-25; 99.9 6.2E-25 1.3E-29 213.7 7.1 176 30-211 70-294 (659)
282 cd03223 ABCD_peroxisomal_ALDP 99.9 5.1E-25 1.1E-29 179.9 5.4 130 29-182 1-149 (166)
283 cd03228 ABCC_MRP_Like The MRP 99.9 2.8E-25 6E-30 182.2 3.5 135 29-184 1-158 (171)
284 cd03217 ABC_FeS_Assembly ABC-t 99.9 1.9E-25 4.2E-30 187.6 2.4 155 29-200 1-181 (200)
285 COG0488 Uup ATPase components 99.9 1E-24 2.3E-29 205.9 7.7 173 26-205 1-231 (530)
286 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 1.8E-25 4E-30 219.1 1.8 174 28-209 451-669 (686)
287 cd03247 ABCC_cytochrome_bd The 99.9 1.8E-25 3.8E-30 184.4 1.3 135 29-182 1-158 (178)
288 cd03233 ABC_PDR_domain1 The pl 99.9 2.9E-25 6.2E-30 186.9 2.4 154 27-200 2-196 (202)
289 PRK13409 putative ATPase RIL; 99.9 2.4E-24 5.2E-29 207.2 8.7 165 26-197 338-527 (590)
290 TIGR01257 rim_protein retinal- 99.9 3.7E-25 8E-30 232.6 3.1 176 26-208 926-1144(2272)
291 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 3.6E-24 7.7E-29 205.2 9.6 160 26-188 320-507 (552)
292 COG4138 BtuD ABC-type cobalami 99.9 1.1E-24 2.4E-29 175.5 4.8 188 27-224 2-232 (248)
293 PRK13948 shikimate kinase; Pro 99.9 1.6E-22 3.4E-27 167.4 17.7 168 57-247 10-178 (182)
294 PRK11819 putative ABC transpor 99.9 3.3E-24 7.2E-29 205.6 8.7 166 26-197 322-515 (556)
295 COG4987 CydC ABC-type transpor 99.9 8.1E-25 1.7E-29 201.5 4.2 179 28-213 336-561 (573)
296 KOG0055 Multidrug/pheromone ex 99.9 5.4E-25 1.2E-29 219.0 3.1 180 27-213 349-576 (1228)
297 TIGR02868 CydC thiol reductant 99.9 1.1E-23 2.5E-28 200.7 11.5 150 28-180 334-528 (529)
298 COG4136 ABC-type uncharacteriz 99.9 1.3E-23 2.8E-28 165.4 9.6 154 28-185 2-199 (213)
299 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 4.7E-25 1E-29 176.1 1.4 120 29-187 1-133 (144)
300 COG0488 Uup ATPase components 99.9 2.8E-23 6.1E-28 196.2 13.6 152 24-180 317-495 (530)
301 cd03288 ABCC_SUR2 The SUR doma 99.9 4.7E-25 1E-29 192.1 1.2 168 26-202 17-232 (257)
302 PLN03073 ABC transporter F fam 99.9 7.5E-25 1.6E-29 214.5 2.7 169 26-200 506-700 (718)
303 KOG0058 Peptide exporter, ABC 99.9 1.6E-24 3.6E-29 205.5 4.7 179 27-213 464-691 (716)
304 PRK11174 cysteine/glutathione 99.9 1.1E-24 2.3E-29 210.3 3.1 177 28-211 349-570 (588)
305 PRK11160 cysteine/glutathione 99.9 1E-24 2.2E-29 209.9 3.0 177 27-210 337-559 (574)
306 TIGR00958 3a01208 Conjugate Tr 99.9 1E-24 2.2E-29 214.6 2.9 176 27-209 477-698 (711)
307 PLN03073 ABC transporter F fam 99.9 1.3E-24 2.9E-29 212.7 3.6 168 25-202 174-419 (718)
308 TIGR02770 nickel_nikD nickel i 99.9 1.1E-24 2.4E-29 186.8 2.4 160 43-208 1-210 (230)
309 COG1132 MdlB ABC-type multidru 99.9 1.3E-24 2.9E-29 208.8 3.2 178 28-212 328-551 (567)
310 COG4172 ABC-type uncharacteriz 99.9 1.7E-24 3.6E-29 193.6 3.0 183 25-213 3-247 (534)
311 TIGR03375 type_I_sec_LssB type 99.9 1.2E-24 2.6E-29 213.6 2.0 174 27-207 462-682 (694)
312 TIGR01193 bacteriocin_ABC ABC- 99.9 1.3E-24 2.9E-29 213.7 2.2 175 28-209 473-693 (708)
313 COG4148 ModC ABC-type molybdat 99.9 6.6E-25 1.4E-29 188.1 -0.0 176 33-216 5-221 (352)
314 COG1134 TagH ABC-type polysacc 99.9 3.2E-24 6.9E-29 181.3 4.1 167 40-212 39-235 (249)
315 TIGR03771 anch_rpt_ABC anchore 99.9 4E-24 8.6E-29 182.5 4.6 167 49-222 1-210 (223)
316 PRK11176 lipid transporter ATP 99.9 1.9E-24 4.2E-29 208.2 2.9 176 28-210 341-564 (582)
317 cd03290 ABCC_SUR1_N The SUR do 99.9 7.9E-24 1.7E-28 179.9 6.1 150 30-183 2-204 (218)
318 PRK10535 macrolide transporter 99.9 7.7E-24 1.7E-28 206.2 6.5 179 27-212 3-231 (648)
319 TIGR01842 type_I_sec_PrtD type 99.9 3E-24 6.5E-29 205.4 3.5 170 27-203 315-532 (544)
320 cd03291 ABCC_CFTR1 The CFTR su 99.9 2.6E-24 5.6E-29 189.8 2.7 177 26-212 37-246 (282)
321 PRK13949 shikimate kinase; Pro 99.9 8E-22 1.7E-26 161.5 17.1 165 59-241 3-168 (169)
322 PRK10790 putative multidrug tr 99.9 2.4E-24 5.1E-29 208.0 2.2 176 28-211 340-561 (592)
323 PRK13657 cyclic beta-1,2-gluca 99.9 2.8E-24 6.2E-29 207.3 2.5 173 28-207 334-552 (588)
324 COG4988 CydD ABC-type transpor 99.9 6.5E-24 1.4E-28 197.7 4.8 177 28-212 320-542 (559)
325 cd03237 ABC_RNaseL_inhibitor_d 99.9 1.7E-23 3.6E-28 181.3 7.0 151 41-194 7-186 (246)
326 cd03236 ABC_RNaseL_inhibitor_d 99.9 2.7E-23 5.9E-28 180.8 8.3 159 32-197 4-212 (255)
327 TIGR01846 type_I_sec_HlyB type 99.9 3.4E-24 7.3E-29 210.5 2.5 178 27-211 454-678 (694)
328 COG4133 CcmA ABC-type transpor 99.9 5.2E-23 1.1E-27 167.3 8.9 151 27-180 1-189 (209)
329 COG4107 PhnK ABC-type phosphon 99.9 1.7E-23 3.8E-28 168.5 5.8 183 25-213 3-241 (258)
330 cd03222 ABC_RNaseL_inhibitor T 99.9 1.4E-23 3.1E-28 172.9 5.3 119 32-188 4-139 (177)
331 TIGR01192 chvA glucan exporter 99.9 4.3E-24 9.4E-29 205.9 2.4 173 27-206 333-551 (585)
332 TIGR02203 MsbA_lipidA lipid A 99.9 5.4E-24 1.2E-28 204.5 3.1 176 28-210 330-553 (571)
333 COG1101 PhnK ABC-type uncharac 99.9 1.2E-23 2.6E-28 174.4 3.6 170 28-203 1-228 (263)
334 cd03238 ABC_UvrA The excision 99.9 5.9E-24 1.3E-28 175.1 1.7 126 40-182 7-150 (176)
335 PRK15177 Vi polysaccharide exp 99.9 8.6E-24 1.9E-28 179.3 2.7 156 42-203 1-182 (213)
336 TIGR02857 CydD thiol reductant 99.9 2.2E-22 4.8E-27 191.9 11.8 152 28-182 320-518 (529)
337 PRK10789 putative multidrug tr 99.9 1.5E-23 3.3E-28 201.6 3.3 176 28-210 313-535 (569)
338 PRK13409 putative ATPase RIL; 99.9 9.4E-23 2E-27 196.2 8.6 156 32-198 77-285 (590)
339 COG4618 ArpD ABC-type protease 99.9 8.4E-23 1.8E-27 187.0 7.6 179 28-213 334-560 (580)
340 TIGR02204 MsbA_rel ABC transpo 99.9 2E-23 4.4E-28 200.8 2.9 170 27-203 336-553 (576)
341 PTZ00265 multidrug resistance 99.9 2.1E-23 4.6E-28 217.3 3.0 165 28-199 1165-1433(1466)
342 TIGR00954 3a01203 Peroxysomal 99.9 2.1E-22 4.5E-27 196.5 9.5 153 27-182 450-640 (659)
343 PRK05057 aroK shikimate kinase 99.9 9E-21 1.9E-25 155.7 17.6 166 57-244 4-171 (172)
344 TIGR00956 3a01205 Pleiotropic 99.9 5.9E-23 1.3E-27 213.5 5.5 176 28-209 759-989 (1394)
345 cd00267 ABC_ATPase ABC (ATP-bi 99.9 6.7E-23 1.4E-27 165.6 2.0 125 31-183 2-142 (157)
346 PTZ00265 multidrug resistance 99.9 3.8E-22 8.1E-27 208.0 7.2 167 28-201 382-656 (1466)
347 KOG0055 Multidrug/pheromone ex 99.9 1.7E-22 3.7E-27 201.4 4.3 177 28-212 987-1212(1228)
348 PLN03130 ABC transporter C fam 99.9 8.2E-23 1.8E-27 214.6 1.6 178 28-213 1237-1461(1622)
349 COG4167 SapF ABC-type antimicr 99.9 3.3E-22 7.2E-27 162.3 4.7 182 26-213 2-239 (267)
350 PLN03232 ABC transporter C fam 99.9 8.3E-23 1.8E-27 214.0 1.3 178 28-213 1234-1458(1495)
351 TIGR01194 cyc_pep_trnsptr cycl 99.9 2E-21 4.3E-26 186.4 10.4 150 27-182 336-532 (555)
352 TIGR00955 3a01204 The Eye Pigm 99.9 2.1E-22 4.5E-27 195.3 3.5 167 39-211 36-254 (617)
353 KOG0056 Heavy metal exporter H 99.8 2.5E-22 5.4E-27 183.2 3.1 178 27-212 536-760 (790)
354 PRK10522 multidrug transporter 99.8 2.1E-21 4.6E-26 185.9 9.4 163 28-201 322-526 (547)
355 PRK14021 bifunctional shikimat 99.8 3.1E-20 6.8E-25 177.2 17.2 165 57-244 6-176 (542)
356 TIGR00957 MRP_assoc_pro multi 99.8 2E-22 4.3E-27 211.4 1.5 178 27-212 1283-1507(1522)
357 PLN03140 ABC transporter G fam 99.8 8.7E-22 1.9E-26 204.8 5.7 175 28-208 867-1105(1470)
358 COG4778 PhnL ABC-type phosphon 99.8 2E-20 4.2E-25 150.3 11.9 151 27-180 3-211 (235)
359 PTZ00243 ABC transporter; Prov 99.8 2.8E-22 6.1E-27 210.2 1.3 177 28-212 1308-1532(1560)
360 PF00005 ABC_tran: ABC transpo 99.8 8.7E-21 1.9E-25 149.3 9.2 108 44-161 1-137 (137)
361 PF01202 SKI: Shikimate kinase 99.8 3.8E-20 8.1E-25 149.9 13.0 156 66-242 1-157 (158)
362 cd03270 ABC_UvrA_I The excisio 99.8 8.5E-22 1.8E-26 168.6 3.4 153 36-197 3-211 (226)
363 PRK00625 shikimate kinase; Pro 99.8 2.5E-19 5.4E-24 147.2 17.5 164 59-242 2-171 (173)
364 KOG0061 Transporter, ABC super 99.8 1.4E-20 3E-25 181.8 11.7 180 28-212 25-259 (613)
365 TIGR01271 CFTR_protein cystic 99.8 5.1E-22 1.1E-26 207.9 1.4 178 27-212 1216-1439(1490)
366 KOG0062 ATPase component of AB 99.8 2.1E-20 4.5E-25 171.4 10.9 173 28-206 80-277 (582)
367 TIGR01187 potA spermidine/putr 99.8 3.5E-22 7.6E-27 179.7 -1.5 148 62-212 1-189 (325)
368 TIGR00956 3a01205 Pleiotropic 99.8 3E-21 6.6E-26 200.8 2.6 166 40-211 73-298 (1394)
369 KOG0059 Lipid exporter ABCA1 a 99.8 1.4E-20 2.9E-25 188.7 5.5 186 26-223 562-791 (885)
370 TIGR00957 MRP_assoc_pro multi 99.8 8.7E-21 1.9E-25 199.1 4.1 175 28-210 636-847 (1522)
371 PLN03232 ABC transporter C fam 99.8 7.3E-21 1.6E-25 199.4 2.6 173 28-208 614-823 (1495)
372 PRK13946 shikimate kinase; Pro 99.8 3.8E-18 8.2E-23 141.5 18.2 172 57-250 10-182 (184)
373 KOG0927 Predicted transporter 99.8 5.6E-20 1.2E-24 169.5 7.3 156 25-184 386-569 (614)
374 PLN03130 ABC transporter C fam 99.8 1.3E-20 2.7E-25 198.3 2.1 172 28-207 614-822 (1622)
375 PLN03140 ABC transporter G fam 99.8 1.1E-20 2.4E-25 196.6 0.9 170 35-211 173-425 (1470)
376 KOG0927 Predicted transporter 99.8 3E-19 6.4E-24 164.8 8.5 180 26-211 73-307 (614)
377 TIGR01271 CFTR_protein cystic 99.8 5.7E-20 1.2E-24 192.6 2.3 161 41-208 439-631 (1490)
378 PRK13947 shikimate kinase; Pro 99.8 3.4E-17 7.3E-22 133.7 17.2 160 59-240 3-163 (171)
379 KOG0066 eIF2-interacting prote 99.8 3E-18 6.6E-23 155.0 11.8 193 24-247 582-802 (807)
380 PRK00131 aroK shikimate kinase 99.8 5.2E-17 1.1E-21 132.4 18.0 170 56-247 3-174 (175)
381 cd03271 ABC_UvrA_II The excisi 99.8 2.5E-19 5.4E-24 156.1 3.1 139 41-182 8-233 (261)
382 COG5265 ATM1 ABC-type transpor 99.8 4.9E-19 1.1E-23 159.3 4.6 177 28-212 262-485 (497)
383 PRK08154 anaerobic benzoate ca 99.7 1.6E-16 3.6E-21 142.0 18.3 175 49-247 128-304 (309)
384 PTZ00243 ABC transporter; Prov 99.7 4.6E-19 1E-23 186.2 1.6 164 37-207 669-864 (1560)
385 COG4615 PvdE ABC-type sideroph 99.7 2.2E-17 4.7E-22 147.8 9.0 169 28-203 322-527 (546)
386 PRK03731 aroL shikimate kinase 99.7 8.7E-16 1.9E-20 125.5 17.2 164 58-243 3-169 (171)
387 cd03278 ABC_SMC_barmotin Barmo 99.7 4.9E-18 1.1E-22 142.5 3.6 136 42-182 10-177 (197)
388 PRK13951 bifunctional shikimat 99.7 6.5E-16 1.4E-20 145.6 16.4 155 59-239 2-156 (488)
389 cd03279 ABC_sbcCD SbcCD and ot 99.7 4.3E-18 9.2E-23 144.4 1.5 153 28-188 5-200 (213)
390 COG1245 Predicted ATPase, RNas 99.7 1.5E-16 3.2E-21 144.7 10.0 154 27-187 341-522 (591)
391 KOG0054 Multidrug resistance-a 99.7 3.2E-17 7E-22 167.0 4.8 180 26-213 1136-1362(1381)
392 COG4170 SapD ABC-type antimicr 99.7 1.2E-17 2.7E-22 138.5 1.3 181 26-213 1-248 (330)
393 COG4178 ABC-type uncharacteriz 99.7 5E-16 1.1E-20 147.2 12.3 152 26-180 390-573 (604)
394 COG1129 MglA ABC-type sugar tr 99.7 2.8E-17 6E-22 152.9 3.5 169 25-203 260-480 (500)
395 KOG0054 Multidrug resistance-a 99.7 4.7E-17 1E-21 165.8 5.2 180 25-212 515-730 (1381)
396 TIGR00630 uvra excinuclease AB 99.6 4.9E-17 1.1E-21 162.3 2.4 65 118-182 809-892 (924)
397 cd00464 SK Shikimate kinase (S 99.6 1.2E-14 2.6E-19 116.3 14.6 143 60-213 2-146 (154)
398 KOG0062 ATPase component of AB 99.6 1.9E-16 4.2E-21 145.5 4.6 164 22-188 356-546 (582)
399 cd03272 ABC_SMC3_euk Eukaryoti 99.6 2.4E-16 5.1E-21 135.9 4.8 44 29-81 4-47 (243)
400 KOG0065 Pleiotropic drug resis 99.6 3.8E-16 8.2E-21 156.7 5.9 178 28-210 787-1018(1391)
401 PRK00349 uvrA excinuclease ABC 99.6 1.8E-16 3.8E-21 158.6 2.3 66 118-183 811-895 (943)
402 PRK00635 excinuclease ABC subu 99.6 2.1E-16 4.6E-21 164.7 2.8 75 119-197 791-884 (1809)
403 KOG0066 eIF2-interacting prote 99.6 1.2E-15 2.6E-20 138.3 6.5 174 27-206 263-491 (807)
404 cd03274 ABC_SMC4_euk Eukaryoti 99.6 4.1E-17 8.8E-22 138.4 -3.1 142 29-180 6-189 (212)
405 cd03273 ABC_SMC2_euk Eukaryoti 99.6 1E-15 2.3E-20 132.8 3.8 142 29-180 6-228 (251)
406 COG1245 Predicted ATPase, RNas 99.6 1.4E-15 3.1E-20 138.3 4.6 146 33-182 79-274 (591)
407 cd03276 ABC_SMC6_euk Eukaryoti 99.6 2.2E-14 4.7E-19 120.4 10.4 140 43-186 11-181 (198)
408 KOG0060 Long-chain acyl-CoA tr 99.5 2.5E-14 5.4E-19 133.3 10.7 148 26-180 431-626 (659)
409 KOG2355 Predicted ABC-type tra 99.5 4.2E-15 9.2E-20 123.0 4.6 173 25-204 10-228 (291)
410 KOG0064 Peroxisomal long-chain 99.5 9.9E-14 2.1E-18 128.2 7.8 149 28-183 481-671 (728)
411 COG3845 ABC-type uncharacteriz 99.5 8.9E-14 1.9E-18 127.9 7.3 178 25-208 254-487 (501)
412 cd03275 ABC_SMC1_euk Eukaryoti 99.5 1.1E-13 2.4E-18 119.9 6.9 51 130-180 152-218 (247)
413 PRK10078 ribose 1,5-bisphospho 99.4 1.1E-12 2.4E-17 108.8 11.8 159 57-247 2-179 (186)
414 COG2401 ABC-type ATPase fused 99.4 3.2E-13 6.8E-18 122.0 8.2 137 40-182 395-569 (593)
415 cd03240 ABC_Rad50 The catalyti 99.4 4.1E-13 8.9E-18 113.2 8.3 122 46-181 15-183 (204)
416 cd03280 ABC_MutS2 MutS2 homolo 99.4 9.4E-14 2E-18 116.6 4.1 114 43-180 16-150 (200)
417 COG0178 UvrA Excinuclease ATPa 99.4 2E-12 4.4E-17 124.8 10.3 65 119-183 804-887 (935)
418 cd03282 ABC_MSH4_euk MutS4 hom 99.4 8.5E-13 1.8E-17 111.3 5.7 122 39-180 14-150 (204)
419 cd03277 ABC_SMC5_euk Eukaryoti 99.3 3.8E-12 8.3E-17 108.0 8.4 141 44-188 14-199 (213)
420 PRK00635 excinuclease ABC subu 99.3 8.9E-12 1.9E-16 130.7 12.1 64 118-181 1680-1762(1809)
421 cd03285 ABC_MSH2_euk MutS2 hom 99.3 2.5E-12 5.4E-17 109.8 5.2 122 39-180 15-152 (222)
422 PRK09169 hypothetical protein; 99.3 3.7E-11 8E-16 125.6 14.1 150 57-212 2110-2261(2316)
423 cd03283 ABC_MutS-like MutS-lik 99.3 1.1E-11 2.3E-16 104.2 7.6 37 40-81 13-49 (199)
424 cd03243 ABC_MutS_homologs The 99.3 3.1E-12 6.7E-17 107.5 3.4 111 45-180 20-150 (202)
425 cd03239 ABC_SMC_head The struc 99.2 9.5E-11 2E-15 96.8 8.4 122 44-180 12-157 (178)
426 cd03227 ABC_Class2 ABC-type Cl 99.1 3.5E-11 7.5E-16 97.8 4.5 113 45-180 12-140 (162)
427 KOG0065 Pleiotropic drug resis 99.1 2.4E-11 5.2E-16 122.7 3.1 167 41-212 128-350 (1391)
428 PRK03839 putative kinase; Prov 99.1 5.7E-10 1.2E-14 91.9 10.3 153 59-246 2-155 (180)
429 PRK13477 bifunctional pantoate 99.1 2.6E-09 5.6E-14 101.0 15.2 56 34-93 265-320 (512)
430 PRK09825 idnK D-gluconate kina 99.1 2.3E-09 5E-14 88.3 12.9 112 55-170 1-119 (176)
431 cd00820 PEPCK_HprK Phosphoenol 99.0 1.9E-10 4.1E-15 86.7 4.2 46 41-91 2-47 (107)
432 PRK14532 adenylate kinase; Pro 99.0 1.1E-08 2.3E-13 84.8 15.0 165 59-243 2-186 (188)
433 KOG0063 RNAse L inhibitor, ABC 99.0 5.2E-10 1.1E-14 101.7 7.5 140 41-180 349-506 (592)
434 PRK13975 thymidylate kinase; P 99.0 4.6E-09 1E-13 87.4 12.3 169 57-245 2-191 (196)
435 TIGR01313 therm_gnt_kin carboh 99.0 8E-09 1.7E-13 83.5 12.4 109 60-171 1-115 (163)
436 PRK05541 adenylylsulfate kinas 99.0 1.5E-09 3.2E-14 89.1 8.1 156 57-244 7-172 (176)
437 TIGR02322 phosphon_PhnN phosph 99.0 8.1E-09 1.8E-13 84.8 12.4 114 57-171 1-132 (179)
438 PRK03846 adenylylsulfate kinas 99.0 2.2E-09 4.7E-14 90.0 9.1 156 57-244 24-192 (198)
439 PRK04182 cytidylate kinase; Pr 99.0 2.6E-08 5.6E-13 81.4 15.3 157 59-247 2-176 (180)
440 cd03284 ABC_MutS1 MutS1 homolo 99.0 5E-10 1.1E-14 95.2 4.8 37 40-80 17-53 (216)
441 KOG3354 Gluconate kinase [Carb 99.0 1.9E-08 4.2E-13 79.9 13.2 156 58-244 13-188 (191)
442 PRK14530 adenylate kinase; Pro 99.0 4.4E-08 9.6E-13 83.0 16.2 111 56-170 2-126 (215)
443 TIGR01069 mutS2 MutS2 family p 99.0 7.4E-10 1.6E-14 109.8 5.9 131 28-180 295-444 (771)
444 PRK05537 bifunctional sulfate 98.9 1.5E-09 3.2E-14 104.5 7.2 153 54-244 389-562 (568)
445 TIGR01360 aden_kin_iso1 adenyl 98.9 5.7E-08 1.2E-12 80.0 15.3 169 57-244 3-187 (188)
446 smart00534 MUTSac ATPase domai 98.9 7.9E-10 1.7E-14 91.7 2.9 100 60-181 2-122 (185)
447 PRK00889 adenylylsulfate kinas 98.8 1.1E-08 2.3E-13 83.9 8.1 157 57-244 4-170 (175)
448 COG3265 GntK Gluconate kinase 98.8 1.1E-07 2.3E-12 75.2 13.2 149 63-244 1-159 (161)
449 cd03287 ABC_MSH3_euk MutS3 hom 98.8 3.3E-09 7.1E-14 90.6 4.9 38 40-80 17-54 (222)
450 cd03241 ABC_RecN RecN ATPase i 98.8 2.3E-08 5.1E-13 88.0 9.8 50 131-181 168-233 (276)
451 PRK06217 hypothetical protein; 98.8 3.8E-08 8.3E-13 81.4 9.9 102 58-170 2-104 (183)
452 TIGR03575 selen_PSTK_euk L-ser 98.8 3.6E-08 7.8E-13 89.0 10.1 98 60-169 2-121 (340)
453 PRK06762 hypothetical protein; 98.8 2.1E-07 4.6E-12 75.4 13.4 152 58-243 3-163 (166)
454 COG3910 Predicted ATPase [Gene 98.8 3.9E-08 8.5E-13 80.8 8.5 136 41-180 23-187 (233)
455 cd03286 ABC_MSH6_euk MutS6 hom 98.7 6E-09 1.3E-13 88.7 3.3 40 39-81 15-54 (218)
456 cd03242 ABC_RecF RecF is a rec 98.7 1.1E-07 2.5E-12 83.4 11.2 36 42-81 10-45 (270)
457 cd03281 ABC_MSH5_euk MutS5 hom 98.7 2E-08 4.3E-13 85.2 6.0 35 42-79 17-51 (213)
458 COG1102 Cmk Cytidylate kinase 98.7 1.2E-06 2.7E-11 70.3 15.0 168 59-247 2-175 (179)
459 PRK05416 glmZ(sRNA)-inactivati 98.7 1.2E-06 2.6E-11 77.6 16.1 147 57-244 6-160 (288)
460 cd00227 CPT Chloramphenicol (C 98.7 7.9E-07 1.7E-11 72.9 13.6 37 57-93 2-40 (175)
461 PRK13695 putative NTPase; Prov 98.6 4.7E-09 1E-13 86.0 -0.0 128 59-200 2-151 (174)
462 PLN02200 adenylate kinase fami 98.6 4.4E-06 9.6E-11 71.9 18.2 114 57-171 43-167 (234)
463 PRK11545 gntK gluconate kinase 98.6 1.5E-07 3.2E-12 76.6 8.5 105 63-170 1-111 (163)
464 TIGR03238 dnd_assoc_3 dnd syst 98.6 1.5E-08 3.3E-13 94.3 2.9 46 41-91 19-69 (504)
465 TIGR01359 UMP_CMP_kin_fam UMP- 98.6 4.7E-06 1E-10 68.4 17.3 112 59-171 1-125 (183)
466 PLN02165 adenylate isopentenyl 98.6 2.8E-07 6E-12 82.8 9.9 113 56-169 42-194 (334)
467 PRK13808 adenylate kinase; Pro 98.6 3E-06 6.5E-11 76.2 16.1 111 59-170 2-127 (333)
468 cd02021 GntK Gluconate kinase 98.6 4.3E-07 9.2E-12 72.3 9.0 109 59-170 1-118 (150)
469 TIGR02788 VirB11 P-type DNA tr 98.6 4.8E-08 1E-12 87.4 3.8 147 47-222 137-289 (308)
470 KOG0063 RNAse L inhibitor, ABC 98.5 3.6E-08 7.9E-13 89.9 2.8 139 44-183 84-275 (592)
471 PRK08118 topology modulation p 98.5 3.8E-07 8.3E-12 74.5 8.4 35 59-93 3-37 (167)
472 PRK14526 adenylate kinase; Pro 98.5 1.1E-05 2.5E-10 68.3 17.7 111 59-170 2-122 (211)
473 PRK01184 hypothetical protein; 98.5 5.7E-06 1.2E-10 68.2 15.5 35 59-94 3-37 (184)
474 PRK14527 adenylate kinase; Pro 98.5 8.1E-06 1.8E-10 67.8 16.3 115 57-171 6-133 (191)
475 PRK14531 adenylate kinase; Pro 98.5 1.5E-05 3.3E-10 65.8 17.8 113 59-171 4-129 (183)
476 TIGR02858 spore_III_AA stage I 98.5 3.1E-07 6.7E-12 80.6 7.8 25 58-82 112-136 (270)
477 PRK00409 recombination and DNA 98.5 7.2E-08 1.6E-12 96.1 4.1 112 46-180 318-449 (782)
478 TIGR00455 apsK adenylylsulfate 98.5 5.7E-07 1.2E-11 74.3 8.3 108 50-166 14-132 (184)
479 PRK08533 flagellar accessory p 98.5 7.2E-07 1.6E-11 76.6 8.5 41 29-81 8-49 (230)
480 PRK08356 hypothetical protein; 98.5 1.1E-05 2.4E-10 67.3 15.5 159 57-245 5-193 (195)
481 PRK07721 fliI flagellum-specif 98.4 1.2E-07 2.6E-12 88.4 3.1 39 40-82 145-183 (438)
482 PF13671 AAA_33: AAA domain; P 98.4 3E-07 6.4E-12 72.3 4.8 108 59-171 1-119 (143)
483 PRK02496 adk adenylate kinase; 98.4 2.1E-05 4.6E-10 64.8 15.5 112 59-171 3-129 (184)
484 PRK00349 uvrA excinuclease ABC 98.4 1.6E-08 3.6E-13 101.9 -3.8 89 120-212 472-584 (943)
485 cd02023 UMPK Uridine monophosp 98.4 3.7E-07 8E-12 76.2 4.9 33 59-91 1-36 (198)
486 TIGR00630 uvra excinuclease AB 98.4 1.9E-08 4.1E-13 101.3 -3.5 88 120-211 470-581 (924)
487 TIGR02173 cyt_kin_arch cytidyl 98.4 1.2E-05 2.6E-10 65.0 13.6 105 59-170 2-112 (171)
488 PRK00300 gmk guanylate kinase; 98.4 1.9E-05 4.1E-10 66.1 15.1 27 56-82 4-30 (205)
489 TIGR01351 adk adenylate kinase 98.3 6E-05 1.3E-09 63.6 17.4 110 60-170 2-124 (210)
490 PRK08233 hypothetical protein; 98.3 2.1E-05 4.7E-10 64.2 14.2 27 56-82 2-28 (182)
491 PF02463 SMC_N: RecF/RecN/SMC 98.3 1.4E-06 3E-11 73.9 7.3 34 45-82 16-49 (220)
492 TIGR00767 rho transcription te 98.3 7.4E-07 1.6E-11 81.8 5.2 52 28-82 130-193 (415)
493 PF13207 AAA_17: AAA domain; P 98.3 6.9E-07 1.5E-11 68.3 3.9 33 59-91 1-33 (121)
494 PF13555 AAA_29: P-loop contai 98.3 1E-06 2.3E-11 59.7 4.3 36 44-81 12-47 (62)
495 PRK06793 fliI flagellum-specif 98.3 3.8E-06 8.3E-11 78.1 8.9 117 28-163 130-259 (432)
496 cd01428 ADK Adenylate kinase ( 98.3 7.8E-06 1.7E-10 67.6 9.8 111 60-171 2-126 (194)
497 PRK07261 topology modulation p 98.2 5.7E-06 1.2E-10 67.7 8.7 34 59-92 2-35 (171)
498 PRK14528 adenylate kinase; Pro 98.2 9.5E-05 2.1E-09 61.3 15.5 38 58-95 2-39 (186)
499 cd01128 rho_factor Transcripti 98.2 4.8E-06 1E-10 72.3 7.9 31 49-82 11-41 (249)
500 PLN02674 adenylate kinase 98.2 1E-05 2.2E-10 70.0 9.9 113 57-170 31-158 (244)
No 1
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.8e-40 Score=285.34 Aligned_cols=192 Identities=25% Similarity=0.280 Sum_probs=164.2
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhhh--------
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIEQ-------- 94 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~~-------- 94 (257)
++|+++||++.|+++.+|+|+||++++ |++++|+||||||||||+|+|+|++ |.+++++.++...
T Consensus 1 ~~L~~~~ls~~y~~~~il~~ls~~i~~---G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ 77 (258)
T COG1120 1 MMLEVENLSFGYGGKPILDDLSFSIPK---GEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKK 77 (258)
T ss_pred CeeEEEEEEEEECCeeEEecceEEecC---CcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhh
Confidence 368999999999999999999999999 9999999999999999999999988 5578888765321
Q ss_pred ---------cCCCCCHHHHHHHhCch---HH-------HHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CC
Q 025114 95 ---------SVDGTSVAEIFKLYGEG---FF-------REKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KG 151 (257)
Q Consensus 95 ---------~~~~~~v~e~~~~~g~~---~~-------~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~ 151 (257)
..+++++.|++...... +| .+...++|+.+++.+ +.+.+|||||+||+.+|++|. +|
T Consensus 78 ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~ 157 (258)
T COG1120 78 LAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQET 157 (258)
T ss_pred EEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCC
Confidence 11367777777653211 11 224556788888765 899999999999999999997 69
Q ss_pred cEEEEECCHHHH-----------HHHHHh-cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecchhhhh
Q 025114 152 ISVWLDVPLEAL-----------AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAV 219 (257)
Q Consensus 152 ~vl~LDep~~~L-----------~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~~l~~ 219 (257)
++++|||||+.| ++++++ .|.++++++||+|.+.+|| |++..|.+|++.+.|+|.+++|++.+++
T Consensus 158 ~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~rya---d~~i~lk~G~i~a~G~p~evlT~e~l~~ 234 (258)
T COG1120 158 PILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYA---DHLILLKDGKIVAQGTPEEVLTEENLRE 234 (258)
T ss_pred CEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC---CEEEEEECCeEEeecCcchhcCHHHHHH
Confidence 999999999998 577774 4899999999999999999 9999999999999999999999999999
Q ss_pred hcccc
Q 025114 220 KLGHK 224 (257)
Q Consensus 220 ~~~~~ 224 (257)
+||..
T Consensus 235 Vygv~ 239 (258)
T COG1120 235 VYGVD 239 (258)
T ss_pred HhCCc
Confidence 99965
No 2
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.4e-39 Score=273.50 Aligned_cols=191 Identities=22% Similarity=0.293 Sum_probs=162.0
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchh-----------
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDT----------- 90 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~----------- 90 (257)
+++|+++|+++.|++.+||+||||+|++ |++++||||||||||||+|+|.|++ |.+.+.+..
T Consensus 2 ~~~i~v~nl~v~y~~~~vl~~i~l~v~~---G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~Ig 78 (254)
T COG1121 2 MPMIEVENLTVSYGNRPVLEDISLSVEK---GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIG 78 (254)
T ss_pred CcEEEEeeeEEEECCEeeeeccEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEE
Confidence 5789999999999966899999999999 9999999999999999999999987 334443321
Q ss_pred ------hhhhcCCCCCHHHHHHHhCc---hHH-------HHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-C
Q 025114 91 ------LIEQSVDGTSVAEIFKLYGE---GFF-------REKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-K 150 (257)
Q Consensus 91 ------~~~~~~~~~~v~e~~~~~g~---~~~-------~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~ 150 (257)
.+...+ +.||.|++..... .+| ++...++|+++++.+ +.+.+|||||+||+.+||+|. +
T Consensus 79 YVPQ~~~~d~~f-P~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~ 157 (254)
T COG1121 79 YVPQKSSVDRSF-PITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQN 157 (254)
T ss_pred EcCcccccCCCC-CcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccC
Confidence 122233 7889999876422 122 356778999999875 899999999999999999987 7
Q ss_pred CcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecchhhhh
Q 025114 151 GISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAV 219 (257)
Q Consensus 151 ~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~~l~~ 219 (257)
|++++||||++++ +.++++.|.++++++||++.+..++ |++ .++++++..+|+++++++.+++..
T Consensus 158 p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~---D~v-i~Ln~~~~~~G~~~~~~~~~~l~~ 233 (254)
T COG1121 158 PDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYF---DRV-ICLNRHLIASGPPEEVLTEENLEK 233 (254)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhC---CEE-EEEcCeeEeccChhhccCHHHHHH
Confidence 9999999999987 6888877999999999999999998 898 677888999999999999999999
Q ss_pred hcccc
Q 025114 220 KLGHK 224 (257)
Q Consensus 220 ~~~~~ 224 (257)
.||..
T Consensus 234 ~~g~~ 238 (254)
T COG1121 234 AFGGS 238 (254)
T ss_pred HhCcc
Confidence 99943
No 3
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-37 Score=257.37 Aligned_cols=180 Identities=22% Similarity=0.254 Sum_probs=149.8
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh---------
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE--------- 93 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~--------- 93 (257)
++|+++||+|.||+..||++||++|.+ ||+++||||||||||||+|+|+++. |.++++++.+..
T Consensus 1 ~mi~i~~l~K~fg~~~VLkgi~l~v~~---Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~ 77 (240)
T COG1126 1 MMIEIKNLSKSFGDKEVLKGISLSVEK---GEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRR 77 (240)
T ss_pred CeEEEEeeeEEeCCeEEecCcceeEcC---CCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHH
Confidence 479999999999999999999999999 9999999999999999999999987 677888853311
Q ss_pred ---------hcCCCCCHHHHHHHh-----C--chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcE
Q 025114 94 ---------QSVDGTSVAEIFKLY-----G--EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGIS 153 (257)
Q Consensus 94 ---------~~~~~~~v~e~~~~~-----g--~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~v 153 (257)
..++.+|+.+++... + +...++...++|+++|+.+ .++.+|||||+||++|||+|+ +|++
T Consensus 78 ~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~v 157 (240)
T COG1126 78 KVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKV 157 (240)
T ss_pred hcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCE
Confidence 123567777765432 1 2234455678899999976 789999999999999999997 8999
Q ss_pred EEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 154 VWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 154 l~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
+++||||+.| ++.|+..|.|.+.++|++..+...+ ||+..+..|++...|++++++
T Consensus 158 mLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~Va---drviFmd~G~iie~g~p~~~f 224 (240)
T COG1126 158 MLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVA---DRVIFMDQGKIIEEGPPEEFF 224 (240)
T ss_pred EeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhh---heEEEeeCCEEEEecCHHHHh
Confidence 9999999998 5788888999999999998888776 888888888776666666655
No 4
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-36 Score=254.87 Aligned_cols=181 Identities=20% Similarity=0.260 Sum_probs=155.0
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhhh---------
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIEQ--------- 94 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~~--------- 94 (257)
|++++||+|.|+++.+++|+||+|++ |++++|||||||||||++|+|++++ |.+++++.++...
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~---gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~I 77 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEE---GEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKI 77 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecC---CeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhh
Confidence 68999999999999999999999999 9999999999999999999999998 6678887765321
Q ss_pred --------cCCCCCHHHHHHH----hCc--hHHHHHHHHHHHHhcccC-----ccccccChhHhHHHHHHHHhh-CCcEE
Q 025114 95 --------SVDGTSVAEIFKL----YGE--GFFREKETEVLQKLSLMR-----QLVVSTGGGAVTRPINWRYMQ-KGISV 154 (257)
Q Consensus 95 --------~~~~~~v~e~~~~----~g~--~~~~~~~~~~l~~l~~~~-----~~v~~lsgG~~qr~~~a~~l~-~~~vl 154 (257)
.++.+|+.+++.. .+| ...+.+..++++.+++.+ +++.+|||||+||+.++|+|+ +|.++
T Consensus 78 GYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~il 157 (309)
T COG1125 78 GYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPIL 157 (309)
T ss_pred hhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeE
Confidence 2457888887654 233 345567788999999853 899999999999999999987 89999
Q ss_pred EEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecc
Q 025114 155 WLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSL 214 (257)
Q Consensus 155 ~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~ 214 (257)
++|||+.+| +.++.+. +.|++.++||++++..++ |++..|.+|++..|++|+.++..
T Consensus 158 LMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLa---dri~vm~~G~i~Q~~~P~~il~~ 226 (309)
T COG1125 158 LMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLA---DRIAVMDAGEIVQYDTPDEILAN 226 (309)
T ss_pred eecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhh---ceEEEecCCeEEEeCCHHHHHhC
Confidence 999999998 3555544 899999999999999988 99999999999999999877743
No 5
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.6e-36 Score=249.31 Aligned_cols=191 Identities=23% Similarity=0.291 Sum_probs=156.0
Q ss_pred cceEEecceeeee-CccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhhh------
Q 025114 26 ASVLESGNVHAPI-DEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIEQ------ 94 (257)
Q Consensus 26 ~~~l~~~~l~~~~-~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~~------ 94 (257)
+++|+++||++.| +++++|++|||+|++ ||+++|||+||||||||+|+|+|+. |.+++++.++...
T Consensus 1 ~~~i~~~nl~k~yp~~~~aL~~Vnl~I~~---GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr 77 (258)
T COG3638 1 EMMIEVKNLSKTYPGGHQALKDVNLEINQ---GEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELR 77 (258)
T ss_pred CceEEEeeeeeecCCCceeeeeEeEEeCC---CcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHH
Confidence 3689999999999 899999999999999 9999999999999999999999976 4456666443211
Q ss_pred --------------cCCCCCHHHHHHHh--C-ch-----------HHHHHHHHHHHHhcccC---ccccccChhHhHHHH
Q 025114 95 --------------SVDGTSVAEIFKLY--G-EG-----------FFREKETEVLQKLSLMR---QLVVSTGGGAVTRPI 143 (257)
Q Consensus 95 --------------~~~~~~v~e~~~~~--g-~~-----------~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~ 143 (257)
.....++.+++... + .. .-+....++|+++++.+ ++...|||||+||++
T Consensus 78 ~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVa 157 (258)
T COG3638 78 KLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVA 157 (258)
T ss_pred HHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHH
Confidence 01233454443321 1 01 11234457889999876 889999999999999
Q ss_pred HHHHhh-CCcEEEEECCHHHH-----------HHHHHh-cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccc
Q 025114 144 NWRYMQ-KGISVWLDVPLEAL-----------AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANA 210 (257)
Q Consensus 144 ~a~~l~-~~~vl~LDep~~~L-----------~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~ 210 (257)
||++|. +|++++.|||++.| ++++.+ .|.|++..+|+++.+..|| +|+..|.+||+.++|++.+
T Consensus 158 IARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~---~Riigl~~G~ivfDg~~~e 234 (258)
T COG3638 158 IARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYA---DRIIGLKAGRIVFDGPASE 234 (258)
T ss_pred HHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHH---hhheEecCCcEEEeCChhh
Confidence 999987 69999999999998 566664 4899999999999999999 9999999999999999987
Q ss_pred eecchhhhhhccc
Q 025114 211 RVSLENIAVKLGH 223 (257)
Q Consensus 211 ~~~~~~l~~~~~~ 223 (257)
++.+.+.+.||-
T Consensus 235 -l~~~~~~~iYg~ 246 (258)
T COG3638 235 -LTDEALDEIYGN 246 (258)
T ss_pred -hhHHHHHHHhcc
Confidence 888999999994
No 6
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-35 Score=241.21 Aligned_cols=192 Identities=22% Similarity=0.261 Sum_probs=157.5
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC----Cceecchhhh-----------
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG----YSFFDCDTLI----------- 92 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg----~~~~d~~~~~----------- 92 (257)
||+.+|+++...++.+|+++||++.+ ||+++|+||||||||||+|.|+|.+. ...+++...-
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~p---Gev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~r 77 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRP---GEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHR 77 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccC---CcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHh
Confidence 58999999999999999999999999 99999999999999999999999884 3333333221
Q ss_pred ---hh---cCCCCCHHHHHHHhCc------h--HHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh---C--
Q 025114 93 ---EQ---SVDGTSVAEIFKLYGE------G--FFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ---K-- 150 (257)
Q Consensus 93 ---~~---~~~~~~v~e~~~~~g~------~--~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~---~-- 150 (257)
.+ ..+..++.|+++.... . ...+...++|.+.++.+ +.+..||||++||+.+++.|. .
T Consensus 78 aVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v 157 (259)
T COG4559 78 AVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPV 157 (259)
T ss_pred hhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCC
Confidence 01 1136788898876321 1 12233456777766544 899999999999999999885 2
Q ss_pred --CcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecchhh
Q 025114 151 --GISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENI 217 (257)
Q Consensus 151 --~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~~l 217 (257)
+..++|||||+.| .+.++..|..+..++||+|.+..|| |++..|.+||+.+.|++.++++.+.+
T Consensus 158 ~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~Ya---Drivll~~Grv~a~g~p~~vlt~Etl 234 (259)
T COG4559 158 PSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYA---DRIVLLHQGRVIASGSPQDVLTDETL 234 (259)
T ss_pred CCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhh---heeeeeeCCeEeecCCHHHhcCHHHH
Confidence 3489999999998 4667777889999999999999999 99999999999999999999999999
Q ss_pred hhhccccC
Q 025114 218 AVKLGHKD 225 (257)
Q Consensus 218 ~~~~~~~~ 225 (257)
+.+||+.-
T Consensus 235 ~~vyg~~~ 242 (259)
T COG4559 235 ERVYGADI 242 (259)
T ss_pred HHHhCCce
Confidence 99999653
No 7
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-35 Score=247.88 Aligned_cols=191 Identities=19% Similarity=0.196 Sum_probs=161.8
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh---------
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI--------- 92 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~--------- 92 (257)
.+++++++|+|+||+..+++||||++++ |++++|||||||||||++++|+|.+ |.+.+++.++.
T Consensus 2 ~~lL~v~~l~k~FGGl~Al~~Vsl~v~~---Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar 78 (250)
T COG0411 2 TPLLEVRGLSKRFGGLTAVNDVSLEVRP---GEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIAR 78 (250)
T ss_pred CceeeeccceeecCCEEEEeceeEEEcC---CeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHh
Confidence 3679999999999999999999999999 9999999999999999999999998 45677776652
Q ss_pred ---------hhcCCCCCHHHHHHHh------------------CchHHHHHHHHHHHHhcccC---ccccccChhHhHHH
Q 025114 93 ---------EQSVDGTSVAEIFKLY------------------GEGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRP 142 (257)
Q Consensus 93 ---------~~~~~~~~v~e~~~~~------------------g~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~ 142 (257)
.+.+.++|+.|++... .+...+++..++|+.+++.+ ++...||+|++.+.
T Consensus 79 ~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~L 158 (250)
T COG0411 79 LGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRL 158 (250)
T ss_pred ccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHH
Confidence 1234688888876542 12233455667899999875 78899999999999
Q ss_pred HHHHHhh-CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccc
Q 025114 143 INWRYMQ-KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN 209 (257)
Q Consensus 143 ~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~ 209 (257)
++|++|+ +|++++||||.+++ ++++++. |.++.++.|||+.+..+| |++..|..|++.+.|+|+
T Consensus 159 EIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~---dri~Vl~~G~~IAeG~P~ 235 (250)
T COG0411 159 EIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLA---DRIVVLNYGEVIAEGTPE 235 (250)
T ss_pred HHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhc---cEEEeccCCcCcccCCHH
Confidence 9999987 89999999999987 5777764 689999999999999999 999999999999999999
Q ss_pred ceecchhhhhhcc
Q 025114 210 ARVSLENIAVKLG 222 (257)
Q Consensus 210 ~~~~~~~l~~~~~ 222 (257)
++.+...+.++|-
T Consensus 236 eV~~dp~VieAYL 248 (250)
T COG0411 236 EVRNNPRVIEAYL 248 (250)
T ss_pred HHhcCHHhHHHhc
Confidence 9988777777664
No 8
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=8.7e-35 Score=260.21 Aligned_cols=182 Identities=21% Similarity=0.272 Sum_probs=153.6
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhhh-------
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIEQ------- 94 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~~------- 94 (257)
++.++++||+|.||+..+|+|+||+|++ ||+++|+|||||||||+||+|||+. |.+++++.++...
T Consensus 3 ~~~l~i~~v~k~yg~~~av~~isl~i~~---Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~i 79 (352)
T COG3842 3 KPALEIRNVSKSFGDFTAVDDISLDIKK---GEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPI 79 (352)
T ss_pred CceEEEEeeeeecCCeeEEecceeeecC---CcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhccc
Confidence 4689999999999999999999999999 9999999999999999999999998 5678887765321
Q ss_pred --------cCCCCCHHHHHHHhCc-------hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEE
Q 025114 95 --------SVDGTSVAEIFKLYGE-------GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVW 155 (257)
Q Consensus 95 --------~~~~~~v~e~~~~~g~-------~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~ 155 (257)
.++.+||.+++.+.-+ ...++++.++++.+++.+ +.+.+|||||+||+++||+|. +|.+++
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLL 159 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLL 159 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhh
Confidence 2468899999765322 224457778899888865 999999999999999999998 799999
Q ss_pred EECCHHHHH-----------HHHHh-cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceec
Q 025114 156 LDVPLEALA-----------QRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVS 213 (257)
Q Consensus 156 LDep~~~L~-----------~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~ 213 (257)
||||.++|+ +++.+ .|+|.+.++||-+++...+ ||+..|.+|++...|+|+++..
T Consensus 160 LDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~ms---DrI~Vm~~G~I~Q~gtP~eiY~ 226 (352)
T COG3842 160 LDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMS---DRIAVMNDGRIEQVGTPEEIYE 226 (352)
T ss_pred hcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhc---cceEEccCCceeecCCHHHHhh
Confidence 999999993 44433 4899999999987787777 9999999999988888876663
No 9
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6.1e-35 Score=245.10 Aligned_cols=185 Identities=19% Similarity=0.250 Sum_probs=154.3
Q ss_pred CcceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-------
Q 025114 25 SASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------- 93 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------- 93 (257)
..+.|++++|+++||++.|++||||+|++ |++++|+||||||||||+|+|.|++ |.+++++.++..
T Consensus 5 ~~~~I~vr~v~~~fG~~~Ild~v~l~V~~---Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~ 81 (263)
T COG1127 5 PEPLIEVRGVTKSFGDRVILDGVDLDVPR---GEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELY 81 (263)
T ss_pred CcceEEEeeeeeecCCEEEecCceeeecC---CcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHH
Confidence 46789999999999999999999999999 9999999999999999999999998 567887776521
Q ss_pred -------------hcCCCCCHHHHHHHh-------CchHHHHHHHHHHHHhcccC----ccccccChhHhHHHHHHHHhh
Q 025114 94 -------------QSVDGTSVAEIFKLY-------GEGFFREKETEVLQKLSLMR----QLVVSTGGGAVTRPINWRYMQ 149 (257)
Q Consensus 94 -------------~~~~~~~v~e~~~~~-------g~~~~~~~~~~~l~~l~~~~----~~v~~lsgG~~qr~~~a~~l~ 149 (257)
..+..+++.|++++. .+...++.+..-|+.+|+.. ..+.+||||++.|+++||+++
T Consensus 82 ~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAia 161 (263)
T COG1127 82 EIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIA 161 (263)
T ss_pred HHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHh
Confidence 123467888877652 12234444555567777754 789999999999999999998
Q ss_pred -CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecch
Q 025114 150 -KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLE 215 (257)
Q Consensus 150 -~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~ 215 (257)
+|.++++||||++| +++++.. |.|+.+++||++.....| |++..++++++.++|+++++.+.+
T Consensus 162 ldPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~---Drv~~L~~gkv~~~Gt~~el~~sd 237 (263)
T COG1127 162 LDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIA---DRVAVLADGKVIAEGTPEELLASD 237 (263)
T ss_pred cCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhh---ceEEEEeCCEEEEeCCHHHHHhCC
Confidence 89999999999998 5777754 899999999999988888 999999999999999988777543
No 10
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-34 Score=236.48 Aligned_cols=190 Identities=21% Similarity=0.226 Sum_probs=160.5
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhhhc--------
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIEQS-------- 95 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~~~-------- 95 (257)
|++++||+|.|+++.+|+++|++|++ |.+++||||||||||||+.+++.++ |.+++++.++....
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~---g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~l 77 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPK---GGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKL 77 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecC---CceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHH
Confidence 58999999999999999999999999 9999999999999999999999998 56677776542110
Q ss_pred ---------CCCCCHHHHHHHhCch--------HHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEE
Q 025114 96 ---------VDGTSVAEIFKLYGEG--------FFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISV 154 (257)
Q Consensus 96 ---------~~~~~v~e~~~~~g~~--------~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl 154 (257)
....||.+++.+..-. ..+....++++-+.+.+ +...+|||||+||..+|..++ +-+.+
T Consensus 78 SILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyv 157 (252)
T COG4604 78 SILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYV 157 (252)
T ss_pred HHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEE
Confidence 1245777877653211 22344567777777754 899999999999999998887 58999
Q ss_pred EEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecchhhhhhcc
Q 025114 155 WLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLG 222 (257)
Q Consensus 155 ~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~~l~~~~~ 222 (257)
+||||..+| ++|++.. |.++..++||++.+..|+ |.+..+.+|++...|+++++++++.|++.|.
T Consensus 158 lLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~Ys---D~IVAlK~G~vv~~G~~~eii~~~~L~eiyd 234 (252)
T COG4604 158 LLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYS---DHIVALKNGKVVKQGSPDEIIQPEILSEIYD 234 (252)
T ss_pred EecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhh---hheeeecCCEEEecCCHHHhcCHHHHHHHhc
Confidence 999999998 5777755 899999999999999998 9999999999999999999999999999997
Q ss_pred c
Q 025114 223 H 223 (257)
Q Consensus 223 ~ 223 (257)
.
T Consensus 235 m 235 (252)
T COG4604 235 M 235 (252)
T ss_pred C
Confidence 4
No 11
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.3e-34 Score=253.44 Aligned_cols=181 Identities=22% Similarity=0.264 Sum_probs=148.8
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh--------
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE-------- 93 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~-------- 93 (257)
|.+|+++||+|.||+..+|+++||+|+. ||+++|+||||||||||||+|||+. |.+++++.++..
T Consensus 1 M~~i~l~~v~K~yg~~~~l~~i~l~i~~---Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~i 77 (338)
T COG3839 1 MAELELKNVRKSFGSFEVLKDVNLDIED---GEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGI 77 (338)
T ss_pred CcEEEEeeeEEEcCCceeeecceEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCE
Confidence 5689999999999987699999999999 9999999999999999999999998 567888776532
Q ss_pred -------hcCCCCCHHHHHHHhC------chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEE
Q 025114 94 -------QSVDGTSVAEIFKLYG------EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWL 156 (257)
Q Consensus 94 -------~~~~~~~v~e~~~~~g------~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~L 156 (257)
..++.+||.+++.+.- +...++++.++.+.|++.+ +.+.+|||||+||+++++++. +|.+++|
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~ 157 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLL 157 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEe
Confidence 1246889999876532 2345677788889998876 899999999999999998886 7999999
Q ss_pred ECCHHHHH-----------HHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 157 DVPLEALA-----------QRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 157 Dep~~~L~-----------~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
|||.++|+ +++.++ +.|.+.++||-.++...+ |++..|.+|++...|+|.++.
T Consensus 158 DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtla---dri~Vm~~G~i~Q~g~p~ely 222 (338)
T COG3839 158 DEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLA---DRIVVMNDGRIQQVGTPLELY 222 (338)
T ss_pred cCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhC---CEEEEEeCCeeeecCChHHHh
Confidence 99999993 444433 789999999965555555 788788888887777776555
No 12
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-33 Score=239.25 Aligned_cols=167 Identities=22% Similarity=0.304 Sum_probs=131.3
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh---------h
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI---------E 93 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~---------~ 93 (257)
.+++++++++.|++..||+|+||+|.+ ||+++||||||||||||+|+|||+. |.+.+++..+. .
T Consensus 2 ~~l~i~~v~~~f~~~~vl~~i~L~v~~---GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vF 78 (248)
T COG1116 2 ALLEIEGVSKSFGGVEVLEDINLSVEK---GEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVF 78 (248)
T ss_pred ceEEEEeeEEEeCceEEeccceeEECC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEe
Confidence 578999999999999999999999999 9999999999999999999999998 44566665431 1
Q ss_pred h---cCCCCCHHHHHHHh----C--chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECCH
Q 025114 94 Q---SVDGTSVAEIFKLY----G--EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPL 160 (257)
Q Consensus 94 ~---~~~~~~v~e~~~~~----g--~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~ 160 (257)
+ .++.+|+.+++... + ...-+++..++|+.+|+.+ +++.+|||||+||+++|+++. +|++++||||+
T Consensus 79 Q~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPF 158 (248)
T COG1116 79 QEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPF 158 (248)
T ss_pred ccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 1 22456777776442 1 1223446678899999865 899999999999999998887 79999999999
Q ss_pred HHHH-----------HHH-HhcCCCCccccCCCCCCchhhHHHHHHHHHHH
Q 025114 161 EALA-----------QRI-AAVGTDSRPLLHQCESGDAYTEALNRLSTLWE 199 (257)
Q Consensus 161 ~~L~-----------~rl-~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~ 199 (257)
..|+ .++ .+.+.|+++++||++++..++ |||..|-+
T Consensus 159 gALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~Ls---dRivvl~~ 206 (248)
T COG1116 159 GALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLA---DRVVVLSN 206 (248)
T ss_pred chhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhh---CEEEEecC
Confidence 9982 333 234789999999987766555 66644443
No 13
>PLN02199 shikimate kinase
Probab=100.00 E-value=7.6e-32 Score=235.22 Aligned_cols=238 Identities=68% Similarity=1.090 Sum_probs=207.4
Q ss_pred ccccccccCCCCcceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhh
Q 025114 14 SVKVSCTFNSLSASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIE 93 (257)
Q Consensus 14 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~ 93 (257)
...++|+ .....++|+..++. .|++. .|++.+.+|.+++.|..|+|+|++||||||+++.|+..+|++|+|.|.+++
T Consensus 62 ~~~~~~~-~~~~~~~le~~~~~-~~de~-~Lk~~a~~i~~~l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe 138 (303)
T PLN02199 62 SPAVSCS-DNNSSALLETGSVY-PFDED-ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIE 138 (303)
T ss_pred ccccccC-CCCchhhcccCCCC-CCCHH-HHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHH
Confidence 3445666 32345689999999 89876 599999999998889999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccCccccccChhHhHHHHHHHHhhCCcEEEEECCHHHHHHHHHhcCCC
Q 025114 94 QSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTD 173 (257)
Q Consensus 94 ~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~~lsgG~~qr~~~a~~l~~~~vl~LDep~~~L~~rl~~~g~~ 173 (257)
+...|.++.++|..+|+..|++.|.++|+.+...++.|++++||.+.+..++.++.++.++|||.|.+.+.+|+...+..
T Consensus 139 ~~~~G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~~~~VIStGGG~V~~~~n~~~L~~G~vV~Ldas~E~l~~RL~~~~~~ 218 (303)
T PLN02199 139 QAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTD 218 (303)
T ss_pred HHhcCCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCEEEECCCcccCCHHHHHHHhCCeEEEEECCHHHHHHHHhhcCCC
Confidence 87448999999999999999999999999987666789999999999999999888899999999999999999865556
Q ss_pred CccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecchhhhhhccccCCCCCCHHHHHHHHHHHHHhhhcccchhh
Q 025114 174 SRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLKEEDDMA 253 (257)
Q Consensus 174 ~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~ 253 (257)
.||++++.+ ...+....+++..|++.|.+.|..++.+++.+++....|..++++.+|++++.+|++.+..+++.+.+|+
T Consensus 219 ~RPLL~~~~-~d~~~~~~~~L~~L~~~R~plY~~Ad~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l~~~~~~~ 297 (303)
T PLN02199 219 SRPLLHDES-GDAYSVAFKRLSAIWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLEKEETME 297 (303)
T ss_pred CCCcCCCCC-cchhhhHHHHHHHHHHHHHHHHHhCCEEEecccccccccccccCCCCHHHHHHHHHHHHHHHHhhccccc
Confidence 799987522 2222223468889999999999999999988999999999999999999999999999999999888886
Q ss_pred hc
Q 025114 254 IA 255 (257)
Q Consensus 254 ~~ 255 (257)
.+
T Consensus 298 ~~ 299 (303)
T PLN02199 298 IP 299 (303)
T ss_pred cC
Confidence 54
No 14
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.98 E-value=2.7e-33 Score=235.81 Aligned_cols=181 Identities=22% Similarity=0.252 Sum_probs=145.3
Q ss_pred cceEEecceeeeeCccc----cccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhhhc--
Q 025114 26 ASVLESGNVHAPIDEAQ----VLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIEQS-- 95 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~----~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~~~-- 95 (257)
+++|+++|+++.|+++. +|++|||+|.+ ||+++|+|+||||||||+|+|+|+. |.+.+++.......
T Consensus 1 ~~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~---Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~ 77 (252)
T COG1124 1 MTLLSVRNLSIVYGGGKFAFHALNNVSLEIER---GETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRA 77 (252)
T ss_pred CceEEEeceEEEecCCcchhhhhcceeEEecC---CCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccc
Confidence 46899999999999877 99999999999 9999999999999999999999998 55677775432210
Q ss_pred -------------C-----CCCCHHHHHHH----hCchHHHHHHHHHHHHhcccC----ccccccChhHhHHHHHHHHhh
Q 025114 96 -------------V-----DGTSVAEIFKL----YGEGFFREKETEVLQKLSLMR----QLVVSTGGGAVTRPINWRYMQ 149 (257)
Q Consensus 96 -------------~-----~~~~v~e~~~~----~g~~~~~~~~~~~l~~l~~~~----~~v~~lsgG~~qr~~~a~~l~ 149 (257)
. +.+++.+++.. .|.....++..++++.+++.+ +.+.+|||||+||+++|++|.
T Consensus 78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~ 157 (252)
T COG1124 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALI 157 (252)
T ss_pred hhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhc
Confidence 0 23455555432 233333445778899999875 899999999999999999987
Q ss_pred -CCcEEEEECCHHHH-----------HHHHHh-cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 150 -KGISVWLDVPLEAL-----------AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 150 -~~~vl~LDep~~~L-----------~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
+|++++||||++.| +..+++ .+.+.++++||+..+..+| ||+..|.+|.++..+++.++.
T Consensus 158 ~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~c---dRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 158 PEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMC---DRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred cCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHh---hheeeeeCCeEEEeechhhhh
Confidence 89999999999998 355543 4889999999999899998 999999999877666655544
No 15
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=2.1e-33 Score=243.02 Aligned_cols=190 Identities=20% Similarity=0.228 Sum_probs=156.7
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecch---hhhh------
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCD---TLIE------ 93 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~---~~~~------ 93 (257)
++|.++|+++.|+...+++|||++|+. ||.++|+||||||||||||+|||++ |.+++++. +...
T Consensus 1 m~i~i~~~~~~~~~~~a~~di~l~i~~---Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R 77 (345)
T COG1118 1 MSIRINNVKKRFGAFGALDDISLDIKS---GELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR 77 (345)
T ss_pred CceeehhhhhhcccccccccceeeecC---CcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhc
Confidence 468999999999999999999999999 9999999999999999999999998 55666665 2211
Q ss_pred ---------hcCCCCCHHHHHHHhC--------chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCc
Q 025114 94 ---------QSVDGTSVAEIFKLYG--------EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGI 152 (257)
Q Consensus 94 ---------~~~~~~~v~e~~~~~g--------~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~ 152 (257)
..++.+||.+++.+.- +...+.++.++|+.+.+.+ +++.+|||||+||+++|+++. +|.
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~ 157 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPK 157 (345)
T ss_pred ceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCC
Confidence 1246789999877632 2345667778888777654 999999999999999999997 899
Q ss_pred EEEEECCHHHHH-----------HHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecchhhhhh
Q 025114 153 SVWLDVPLEALA-----------QRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVK 220 (257)
Q Consensus 153 vl~LDep~~~L~-----------~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~~l~~~ 220 (257)
+++||||+..|+ +++.++ |.+++.++||.+++.+++ |++..|.+|++...|+++++.+..+-.-+
T Consensus 158 vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~la---drvvvl~~G~Ieqvg~p~ev~~~P~s~fV 234 (345)
T COG1118 158 VLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELA---DRVVVLNQGRIEQVGPPDEVYDHPASRFV 234 (345)
T ss_pred eEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhc---ceEEEecCCeeeeeCCHHHHhcCCCccce
Confidence 999999999983 444444 889999999998888887 99999999999999999888766554444
Q ss_pred cc
Q 025114 221 LG 222 (257)
Q Consensus 221 ~~ 222 (257)
|+
T Consensus 235 ~~ 236 (345)
T COG1118 235 AR 236 (345)
T ss_pred ec
Confidence 44
No 16
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.4e-32 Score=227.05 Aligned_cols=183 Identities=16% Similarity=0.177 Sum_probs=147.9
Q ss_pred CcceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---------CCceecchhhhhh-
Q 025114 25 SASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---------GYSFFDCDTLIEQ- 94 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---------g~~~~d~~~~~~~- 94 (257)
..+.++++||++.||++.+|++||++|++ +++++|||||||||||++|+++... |.+.+++.++...
T Consensus 4 ~~~~~~~~~l~~yYg~~~aL~~i~l~i~~---~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~ 80 (253)
T COG1117 4 KIPAIEVRDLNLYYGDKHALKDINLDIPK---NKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPK 80 (253)
T ss_pred ccceeEecceeEEECchhhhccCceeccC---CceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCC
Confidence 35679999999999999999999999999 9999999999999999999999865 4556666655332
Q ss_pred -----------------cCCCCCHHHHHHHh----Cc--hHHHHHHHHHHHHhcccC-------ccccccChhHhHHHHH
Q 025114 95 -----------------SVDGTSVAEIFKLY----GE--GFFREKETEVLQKLSLMR-------QLVVSTGGGAVTRPIN 144 (257)
Q Consensus 95 -----------------~~~~~~v~e~~~~~----g~--~~~~~~~~~~l~~l~~~~-------~~v~~lsgG~~qr~~~ 144 (257)
..+.+|+.+++... |. ....+.++..|+...+.+ +....|||||+||..+
T Consensus 81 ~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcI 160 (253)
T COG1117 81 VDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCI 160 (253)
T ss_pred CCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHH
Confidence 11368899887653 22 123344555666655542 6788899999999999
Q ss_pred HHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 145 WRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 145 a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
||+++ +|.++++|||+++| +..|+ ...|++.++|+|..+.+.+ |+...++.|+++.||+++.++
T Consensus 161 ARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQAaRvS---D~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 161 ARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQAARVS---DYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHHHHHHHh---HhhhhhcccEEEEEcCHHhhh
Confidence 99998 89999999999998 45555 3579999999998888876 999999999999999998888
Q ss_pred cc
Q 025114 213 SL 214 (257)
Q Consensus 213 ~~ 214 (257)
+.
T Consensus 237 ~~ 238 (253)
T COG1117 237 TN 238 (253)
T ss_pred cC
Confidence 54
No 17
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.97 E-value=2.6e-33 Score=257.31 Aligned_cols=192 Identities=19% Similarity=0.275 Sum_probs=158.2
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh--------
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE-------- 93 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~-------- 93 (257)
|++|+++||++.|+++.+|+++||+|++ |++++|+||||||||||+|+|+|++ |.+++++..+..
T Consensus 1 ~~~L~~~nls~~y~~~~vL~~vs~~i~~---Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~ 77 (402)
T PRK09536 1 MPMIDVSDLSVEFGDTTVLDGVDLSVRE---GSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASR 77 (402)
T ss_pred CceEEEeeEEEEECCEEEEEeeEEEECC---CCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhc
Confidence 4589999999999999999999999999 9999999999999999999999987 445555533211
Q ss_pred ------h---cCCCCCHHHHHHHhCc----------hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-C
Q 025114 94 ------Q---SVDGTSVAEIFKLYGE----------GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-K 150 (257)
Q Consensus 94 ------~---~~~~~~v~e~~~~~g~----------~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~ 150 (257)
+ .+..+++.+++..... ...+++..++++.+++.+ +.+.+|||||+||+.++++|. +
T Consensus 78 ~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~ 157 (402)
T PRK09536 78 RVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQA 157 (402)
T ss_pred ceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 0 1236788887754211 122345567888888864 889999999999999998886 7
Q ss_pred CcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecchhhhh
Q 025114 151 GISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAV 219 (257)
Q Consensus 151 ~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~~l~~ 219 (257)
|.+++||||+++| ++++.+.+.++++++|+++.+.++| |++..|.+|++..+|+++++++.+.+.+
T Consensus 158 P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~a---drii~l~~G~iv~~G~~~ev~~~~~l~~ 234 (402)
T PRK09536 158 TPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYC---DELVLLADGRVRAAGPPADVLTADTLRA 234 (402)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhC---CEEEEEECCEEEEecCHHHHhCcHHHHH
Confidence 9999999999998 4666556789999999999988888 8998999999999999999999999999
Q ss_pred hccc
Q 025114 220 KLGH 223 (257)
Q Consensus 220 ~~~~ 223 (257)
.|+.
T Consensus 235 ~~~~ 238 (402)
T PRK09536 235 AFDA 238 (402)
T ss_pred HhCC
Confidence 9984
No 18
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.2e-32 Score=238.66 Aligned_cols=180 Identities=21% Similarity=0.264 Sum_probs=150.1
Q ss_pred eEEecceeeeeCc-----cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-----
Q 025114 28 VLESGNVHAPIDE-----AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE----- 93 (257)
Q Consensus 28 ~l~~~~l~~~~~~-----~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~----- 93 (257)
||++++|+|.|.. ..+|+||||+|++ |++++|||.||||||||+|+++++. |.++++++++..
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~---GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~ 77 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPK---GEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAE 77 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcC---CcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHH
Confidence 6899999999976 4699999999999 9999999999999999999999987 667888866521
Q ss_pred ------------hc---CCCCCHHHHHHH----hC--chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh
Q 025114 94 ------------QS---VDGTSVAEIFKL----YG--EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ 149 (257)
Q Consensus 94 ------------~~---~~~~~v~e~~~~----~g--~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~ 149 (257)
+. +..+|+.+++.+ .+ +.....++.++|+.+|+.+ +++.+|||||+||+.|||+|+
T Consensus 78 Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa 157 (339)
T COG1135 78 LRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALA 157 (339)
T ss_pred HHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHh
Confidence 11 124567776544 22 2334566788999999976 899999999999999999998
Q ss_pred -CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceec
Q 025114 150 -KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVS 213 (257)
Q Consensus 150 -~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~ 213 (257)
+|++++.||||+.| ++++.+. |.|+++++|.|+-+..+| +|+..|.+|++...|+..+++.
T Consensus 158 ~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic---~rVavm~~G~lvE~G~v~~vF~ 231 (339)
T COG1135 158 NNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRIC---DRVAVLDQGRLVEEGTVSEVFA 231 (339)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHh---hhheEeeCCEEEEeccHHHhhc
Confidence 79999999999998 4566544 999999999999999999 9999999999988888766653
No 19
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=3.2e-33 Score=228.74 Aligned_cols=194 Identities=18% Similarity=0.199 Sum_probs=160.9
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhhh-------
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIEQ------- 94 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~~------- 94 (257)
|++|.++|+.|+|++++|+++|||+|++ ||+++|+|||||||||.+.++.|+. |.+++|+.++...
T Consensus 2 ~~~L~a~~l~K~y~kr~Vv~~Vsl~v~~---GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RAr 78 (243)
T COG1137 2 MSTLVAENLAKSYKKRKVVNDVSLEVNS---GEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRAR 78 (243)
T ss_pred CcEEEehhhhHhhCCeeeeeeeeEEEcC---CcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhh
Confidence 5679999999999999999999999999 9999999999999999999999988 5677777765321
Q ss_pred -----------cCCCCCHHHHHHHhCc----h-H---HHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CC
Q 025114 95 -----------SVDGTSVAEIFKLYGE----G-F---FREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KG 151 (257)
Q Consensus 95 -----------~~~~~~v~e~~~~~g~----~-~---~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~ 151 (257)
.+.++|+.+++...-+ . . .+.+..++|+.+.+.+ ++..+||||++.|+++|++|+ +|
T Consensus 79 lGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P 158 (243)
T COG1137 79 LGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANP 158 (243)
T ss_pred cCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCC
Confidence 1346777776543221 1 1 1112346788888866 789999999999999999987 89
Q ss_pred cEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecchhhhhh
Q 025114 152 ISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVK 220 (257)
Q Consensus 152 ~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~~l~~~ 220 (257)
..++||||++++ ++.|+.+|+.+...-|+..+....| ||...+++|.+.+.|+|+++++.+.+.++
T Consensus 159 ~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~---dRaYIi~~G~vla~G~p~ei~~n~~Vr~~ 235 (243)
T COG1137 159 KFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDIC---DRAYIISDGKVLAEGSPEEIVNNEDVRRV 235 (243)
T ss_pred CEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhh---heEEEEecCeEEecCCHHHHhcChhhhhh
Confidence 999999999987 5777778999999999977777777 89989999999999999999999999999
Q ss_pred ccccC
Q 025114 221 LGHKD 225 (257)
Q Consensus 221 ~~~~~ 225 (257)
|-+.+
T Consensus 236 YLG~~ 240 (243)
T COG1137 236 YLGEN 240 (243)
T ss_pred ccccc
Confidence 87654
No 20
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=5.2e-32 Score=245.36 Aligned_cols=183 Identities=20% Similarity=0.218 Sum_probs=146.3
Q ss_pred CCcceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh------
Q 025114 24 LSASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------ 93 (257)
Q Consensus 24 ~~~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------ 93 (257)
.+|++|+++||+|.|+++.+|+|+||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++..
T Consensus 2 ~~~~~l~~~~l~~~~~~~~~l~~isl~i~~---Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r 78 (351)
T PRK11432 2 TQKNFVVLKNITKRFGSNTVIDNLNLTIKQ---GTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQR 78 (351)
T ss_pred CCCcEEEEEeEEEEECCeEEEeeeEEEEcC---CCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHC
Confidence 467899999999999998999999999999 9999999999999999999999998 456666654311
Q ss_pred ------h---cCCCCCHHHHHHHhC------chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEE
Q 025114 94 ------Q---SVDGTSVAEIFKLYG------EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISV 154 (257)
Q Consensus 94 ------~---~~~~~~v~e~~~~~g------~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl 154 (257)
+ .+..+|+.+++.+.- .....++..++++.+++.+ +.+..|||||+||++++++|. +|+++
T Consensus 79 ~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lL 158 (351)
T PRK11432 79 DICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVL 158 (351)
T ss_pred CEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 1 234678988876531 1122345567888888754 889999999999999998887 79999
Q ss_pred EEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 155 WLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 155 ~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
+||||+++| ++++.+. |.+++.++||.+++..+| |++..|.+|++...++++++.
T Consensus 159 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~la---D~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 159 LFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVS---DTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhC---CEEEEEECCEEEEEcCHHHHH
Confidence 999999998 3444433 789999999988777777 888888888877777665544
No 21
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=7.2e-32 Score=244.97 Aligned_cols=181 Identities=22% Similarity=0.208 Sum_probs=144.5
Q ss_pred cceEEecceeeee-CccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-------
Q 025114 26 ASVLESGNVHAPI-DEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------- 93 (257)
Q Consensus 26 ~~~l~~~~l~~~~-~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------- 93 (257)
|++|+++|+++.| +++.+|+++||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++..
T Consensus 1 m~~l~i~~l~~~~~~~~~~l~~vsl~i~~---Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ 77 (356)
T PRK11650 1 MAGLKLQAVRKSYDGKTQVIKGIDLDVAD---GEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRD 77 (356)
T ss_pred CCEEEEEeEEEEeCCCCEEEeeeeEEEcC---CCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCC
Confidence 3579999999999 788899999999999 9999999999999999999999987 555666654311
Q ss_pred --------hcCCCCCHHHHHHHhCc------hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEE
Q 025114 94 --------QSVDGTSVAEIFKLYGE------GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVW 155 (257)
Q Consensus 94 --------~~~~~~~v~e~~~~~g~------~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~ 155 (257)
..++.+|+.+++..... .....+..++++.+++.+ +.+.+|||||+||+++++++. +|++++
T Consensus 78 ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llL 157 (356)
T PRK11650 78 IAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFL 157 (356)
T ss_pred EEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 12246789888765321 122345567888888864 889999999999999998887 799999
Q ss_pred EECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 156 LDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 156 LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
||||+++| ++++.+. |.+++.++||.+++..+| |++..|.+|++..+|+++++.
T Consensus 158 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~---D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 158 FDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLA---DRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC---CEEEEEeCCEEEEECCHHHHH
Confidence 99999998 3455444 889999999988887777 888888888877677665554
No 22
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.97 E-value=1.4e-31 Score=217.47 Aligned_cols=153 Identities=25% Similarity=0.303 Sum_probs=125.1
Q ss_pred eEEecceeeeeCc-cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh---------
Q 025114 28 VLESGNVHAPIDE-AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE--------- 93 (257)
Q Consensus 28 ~l~~~~l~~~~~~-~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~--------- 93 (257)
||+++||+|.|++ +.+|+||||+|++ ||+++|+||||||||||+|+|.+.. |.+++.+.++..
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~---Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~L 77 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPK---GEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecC---ceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchh
Confidence 5899999999965 5599999999999 9999999999999999999999987 445555544311
Q ss_pred --------h---cCCCCCHHHHHHHh----C--chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCc
Q 025114 94 --------Q---SVDGTSVAEIFKLY----G--EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGI 152 (257)
Q Consensus 94 --------~---~~~~~~v~e~~~~~----g--~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~ 152 (257)
+ ....+|+.|+++.. | ....++++.++|+.+|+.+ ..+.+||||++||++||+++. +|.
T Consensus 78 RR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~ 157 (223)
T COG2884 78 RRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPA 157 (223)
T ss_pred hheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCC
Confidence 1 12466788876542 2 3456788889999999976 679999999999999999887 699
Q ss_pred EEEEECCHHHH-----------HHHHHhcCCCCccccCCCCC
Q 025114 153 SVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCES 183 (257)
Q Consensus 153 vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~ 183 (257)
+++.||||-+| .+++...|.|+++.+||.+.
T Consensus 158 vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~l 199 (223)
T COG2884 158 VLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLEL 199 (223)
T ss_pred eEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHH
Confidence 99999999887 46666779999999999443
No 23
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=7.7e-32 Score=225.51 Aligned_cols=190 Identities=23% Similarity=0.215 Sum_probs=148.4
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh--------
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE-------- 93 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~-------- 93 (257)
+++|+++||+..||..++|++|||++++ ||+++|+|+||||||||+|.|+|+. |.+.+++.++..
T Consensus 1 ~~mL~v~~l~~~YG~~~~L~gvsl~v~~---Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r 77 (237)
T COG0410 1 APMLEVENLSAGYGKIQALRGVSLEVER---GEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERAR 77 (237)
T ss_pred CCceeEEeEeecccceeEEeeeeeEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHh
Confidence 3689999999999999999999999999 9999999999999999999999998 456777776532
Q ss_pred ----------hcCCCCCHHHHHHHhCchH----HHHH-HHHHHHHhcc----cCccccccChhHhHHHHHHHHhh-CCcE
Q 025114 94 ----------QSVDGTSVAEIFKLYGEGF----FREK-ETEVLQKLSL----MRQLVVSTGGGAVTRPINWRYMQ-KGIS 153 (257)
Q Consensus 94 ----------~~~~~~~v~e~~~~~g~~~----~~~~-~~~~l~~l~~----~~~~v~~lsgG~~qr~~~a~~l~-~~~v 153 (257)
..|..+||.|++....... .... .+++++.+-. .++....|||||+|..+++++|. +|++
T Consensus 78 ~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pkl 157 (237)
T COG0410 78 LGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKL 157 (237)
T ss_pred CCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCE
Confidence 1245789999887643211 1111 2334433321 23789999999999999998876 8999
Q ss_pred EEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecchhhhhhc
Q 025114 154 VWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKL 221 (257)
Q Consensus 154 l~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~~l~~~~ 221 (257)
++||||+.+| ++++++. |.++..+.++.+.+..++ |+...|-+||+...|++++....+.+.+.|
T Consensus 158 LLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~ia---Dr~yvle~Griv~~G~~~eL~~~~~v~~~y 234 (237)
T COG0410 158 LLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIA---DRGYVLENGRIVLSGTAAELLADPDVREAY 234 (237)
T ss_pred EEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhh---CEEEEEeCCEEEEecCHHHHhcCHHHHHHh
Confidence 9999999998 5777755 778888888877777666 888888899999889888777655555444
No 24
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.97 E-value=5.5e-32 Score=221.75 Aligned_cols=176 Identities=19% Similarity=0.211 Sum_probs=143.1
Q ss_pred eEEecceeeeeCccc-cccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhhhc-------
Q 025114 28 VLESGNVHAPIDEAQ-VLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIEQS------- 95 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~-~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~~~------- 95 (257)
||++.+++|+|+..+ +++||||+++. |++++|+|+|||||||++|+|++++ |.+.+|+-+.....
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~---Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~I 77 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEE---GEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKI 77 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEecc---ceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhc
Confidence 689999999999866 99999999999 9999999999999999999999998 55677765543321
Q ss_pred ---------CCCCCHHHHHHHhCchH------HHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEE
Q 025114 96 ---------VDGTSVAEIFKLYGEGF------FREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWL 156 (257)
Q Consensus 96 ---------~~~~~v~e~~~~~g~~~------~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~L 156 (257)
+..+|+.|++.+++.-+ ...+..++.+++++.+ +.+..+|-|++|++.+|+++. +|.+++|
T Consensus 78 GVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vl 157 (245)
T COG4555 78 GVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVL 157 (245)
T ss_pred ceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEE
Confidence 13467777777655422 2334456777787754 899999999999999998876 7999999
Q ss_pred ECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccc
Q 025114 157 DVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN 209 (257)
Q Consensus 157 Dep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~ 209 (257)
|||+++| +.+++..|..++..+|.++++..+| |+++.+++|.++..|+.+
T Consensus 158 DEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealC---Drvivlh~Gevv~~gs~~ 218 (245)
T COG4555 158 DEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALC---DRVIVLHKGEVVLEGSIE 218 (245)
T ss_pred cCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhh---heEEEEecCcEEEcCCHH
Confidence 9999998 4666667889999999999999999 999888888766555543
No 25
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=1.2e-31 Score=237.63 Aligned_cols=179 Identities=24% Similarity=0.259 Sum_probs=146.2
Q ss_pred cceEEecceeeeeC-ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-------
Q 025114 26 ASVLESGNVHAPID-EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------- 93 (257)
Q Consensus 26 ~~~l~~~~l~~~~~-~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------- 93 (257)
+.+++++||+|.|+ ++.+|+||||+|++ |++++|+||||||||||+|+|+|++ |.+.+++.+...
T Consensus 2 ~~~i~~~~l~k~~~~~~~~l~~vs~~i~~---Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~ 78 (293)
T COG1131 2 IEVIEVRNLTKKYGGDKTALDGVSFEVEP---GEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRR 78 (293)
T ss_pred CceeeecceEEEeCCCCEEEeceeEEEcC---CeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHh
Confidence 35689999999999 69999999999999 9999999999999999999999998 445555533211
Q ss_pred ---------hcCCCCCHHHHHHHhCch------HHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEE
Q 025114 94 ---------QSVDGTSVAEIFKLYGEG------FFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISV 154 (257)
Q Consensus 94 ---------~~~~~~~v~e~~~~~g~~------~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl 154 (257)
..+..+|+.|++..+..- ..+++..++++.+++.+ +++..+|+|++||+.++.+|. +|.++
T Consensus 79 ~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~ll 158 (293)
T COG1131 79 RIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELL 158 (293)
T ss_pred heEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 123567888887764321 22456778999999985 779999999999999997765 79999
Q ss_pred EEECCHHHH-----------HHHHHhcC-CCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccc
Q 025114 155 WLDVPLEAL-----------AQRIAAVG-TDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANA 210 (257)
Q Consensus 155 ~LDep~~~L-----------~~rl~~~g-~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~ 210 (257)
+|||||++| +++++..| .++...+|.++++..+| |++..+.+|++..+++++.
T Consensus 159 iLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~---d~v~il~~G~~~~~g~~~~ 223 (293)
T COG1131 159 ILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELC---DRVIILNDGKIIAEGTPEE 223 (293)
T ss_pred EECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhC---CEEEEEeCCEEEEeCCHHH
Confidence 999999998 56666666 78999999998888888 8888888998888886554
No 26
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.97 E-value=1.5e-31 Score=242.60 Aligned_cols=182 Identities=20% Similarity=0.232 Sum_probs=147.0
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh--------
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE-------- 93 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~-------- 93 (257)
+++|+++||++.|+++.+|+++||++++ |++++|+||||||||||+|+|+|++ |.+.+++..+..
T Consensus 2 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~i 78 (353)
T TIGR03265 2 SPYLSIDNIRKRFGAFTALKDISLSVKK---GEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY 78 (353)
T ss_pred CcEEEEEEEEEEeCCeEEEEeeEEEEcC---CCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 5679999999999998899999999999 9999999999999999999999997 455666644311
Q ss_pred -------hcCCCCCHHHHHHHhC------chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEE
Q 025114 94 -------QSVDGTSVAEIFKLYG------EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWL 156 (257)
Q Consensus 94 -------~~~~~~~v~e~~~~~g------~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~L 156 (257)
..++.+|+.+++.+.- ....+.+..++++.+++.+ +.+.+|||||+||++++++|. +|++++|
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLL 158 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLL 158 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 1234678988876531 1223455678899998865 889999999999999998887 7999999
Q ss_pred ECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceec
Q 025114 157 DVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVS 213 (257)
Q Consensus 157 Dep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~ 213 (257)
|||+++| ++++.+. +.+++.++||.+++..+| |++..|.+|++...|+++++..
T Consensus 159 DEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~---d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 159 DEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMA---DRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhC---CEEEEEECCEEEEEcCHHHHHh
Confidence 9999998 3444433 889999999988887777 8888888898877777665553
No 27
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.96 E-value=1.5e-31 Score=238.60 Aligned_cols=181 Identities=23% Similarity=0.234 Sum_probs=142.7
Q ss_pred CcceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-------
Q 025114 25 SASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------- 93 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------- 93 (257)
+.++++++||+|.|+++.+|+||||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++..
T Consensus 4 ~~~~i~i~~l~k~~~~~~~l~~vsl~i~~---Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~ 80 (306)
T PRK13537 4 SVAPIDFRNVEKRYGDKLVVDGLSFHVQR---GECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQ 80 (306)
T ss_pred CCceEEEEeEEEEECCeEEEecceEEEeC---CcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHh
Confidence 34689999999999998999999999999 9999999999999999999999997 445555543210
Q ss_pred ---------hcCCCCCHHHHHHHhCc------hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEE
Q 025114 94 ---------QSVDGTSVAEIFKLYGE------GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISV 154 (257)
Q Consensus 94 ---------~~~~~~~v~e~~~~~g~------~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl 154 (257)
..+..+|+.+++...+. ...+.+..++++.+++.+ +.+..||||++||+.+++++. +|.++
T Consensus 81 ~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~ll 160 (306)
T PRK13537 81 RVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVL 160 (306)
T ss_pred cEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEE
Confidence 01235688887764321 112344557788888754 789999999999999998776 79999
Q ss_pred EEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccce
Q 025114 155 WLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANAR 211 (257)
Q Consensus 155 ~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~ 211 (257)
+||||+++| ++++++.|.+++.++|+++++..+| |++..|.+|++...|+++.+
T Consensus 161 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~---d~i~il~~G~i~~~g~~~~l 225 (306)
T PRK13537 161 VLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLC---DRLCVIEEGRKIAEGAPHAL 225 (306)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhC---CEEEEEECCEEEEECCHHHH
Confidence 999999998 4566556889999999998888888 88878878877666665443
No 28
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=9.2e-31 Score=221.18 Aligned_cols=167 Identities=25% Similarity=0.296 Sum_probs=126.5
Q ss_pred eEEecceeeeeCc----cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh-------
Q 025114 28 VLESGNVHAPIDE----AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI------- 92 (257)
Q Consensus 28 ~l~~~~l~~~~~~----~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~------- 92 (257)
+++++||+|.|+. ..+|+++||+|++ ||+++|+|||||||||||++|+|+. |..++++.++.
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~---Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~ 77 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEA---GEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKEL 77 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcC---CCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHH
Confidence 4689999999964 3699999999999 9999999999999999999999988 44566663321
Q ss_pred -----------hh---cCCCCCHHHHHHH----hCch--HHHHHHHHHHHHhcccC----ccccccChhHhHHHHHHHHh
Q 025114 93 -----------EQ---SVDGTSVAEIFKL----YGEG--FFREKETEVLQKLSLMR----QLVVSTGGGAVTRPINWRYM 148 (257)
Q Consensus 93 -----------~~---~~~~~~v~e~~~~----~g~~--~~~~~~~~~l~~l~~~~----~~v~~lsgG~~qr~~~a~~l 148 (257)
.+ ..+.+|+.|++.. .+.. ...+...++++.+++.+ +++.+|||||+||+++||++
T Consensus 78 ~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL 157 (226)
T COG1136 78 AKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARAL 157 (226)
T ss_pred HHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHH
Confidence 01 1256788888763 2222 12344567788888864 67999999999999999988
Q ss_pred h-CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHH
Q 025114 149 Q-KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEER 201 (257)
Q Consensus 149 ~-~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r 201 (257)
. +|.+++.||||.+| ++.+.+. |.++++++||.. ...+| ||+..+.+|+
T Consensus 158 ~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~-lA~~~---dr~i~l~dG~ 219 (226)
T COG1136 158 INNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE-LAKYA---DRVIELKDGK 219 (226)
T ss_pred hcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHhC---CEEEEEeCCe
Confidence 7 79999999999988 4555444 889999999943 33344 6655555544
No 29
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.96 E-value=2e-31 Score=240.74 Aligned_cols=180 Identities=21% Similarity=0.219 Sum_probs=142.1
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh--------
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE-------- 93 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~-------- 93 (257)
+.+|+++||+|.|+++.+|+|+||+|++ |++++|+||||||||||+|+|+|++ |.+.+++.++..
T Consensus 39 ~~~i~i~nl~k~y~~~~~l~~is~~i~~---Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ 115 (340)
T PRK13536 39 TVAIDLAGVSKSYGDKAVVNGLSFTVAS---GECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARAR 115 (340)
T ss_pred ceeEEEEEEEEEECCEEEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhcc
Confidence 4589999999999999999999999999 9999999999999999999999988 344555543210
Q ss_pred -----h---cCCCCCHHHHHHHhCc------hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEE
Q 025114 94 -----Q---SVDGTSVAEIFKLYGE------GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVW 155 (257)
Q Consensus 94 -----~---~~~~~~v~e~~~~~g~------~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~ 155 (257)
+ .+..+++.+++...+. ...++...++++.+++.+ +.+..||||++||+.+++++. +|++++
T Consensus 116 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLi 195 (340)
T PRK13536 116 IGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLI 195 (340)
T ss_pred EEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 0 1235688887654321 112233456788888763 789999999999999998776 799999
Q ss_pred EECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccce
Q 025114 156 LDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANAR 211 (257)
Q Consensus 156 LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~ 211 (257)
||||+++| ++++...|.+++.++|+++++..+| |++..|.+|++...|+++.+
T Consensus 196 LDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~---d~i~il~~G~i~~~g~~~~l 259 (340)
T PRK13536 196 LDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLC---DRLCVLEAGRKIAEGRPHAL 259 (340)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhC---CEEEEEECCEEEEEcCHHHH
Confidence 99999998 4555556889999999999888888 88888888887776765544
No 30
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=1.2e-30 Score=219.38 Aligned_cols=177 Identities=21% Similarity=0.268 Sum_probs=145.6
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhhh--------
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIEQ-------- 94 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~~-------- 94 (257)
++|++++|+|+||++.|++|+||++++ |++.+++|+|||||||++|+|.|++ |.+.+++..+...
T Consensus 1 ~~L~ie~vtK~Fg~k~av~~isf~v~~---G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyL 77 (300)
T COG4152 1 MALEIEGVTKSFGDKKAVDNISFEVPP---GEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYL 77 (300)
T ss_pred CceEEecchhccCceeeecceeeeecC---CeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccC
Confidence 468999999999999999999999999 9999999999999999999999998 4455555433111
Q ss_pred -----cCCCCCHHHHHHHhCc------hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHH-HHhhCCcEEEEECC
Q 025114 95 -----SVDGTSVAEIFKLYGE------GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINW-RYMQKGISVWLDVP 159 (257)
Q Consensus 95 -----~~~~~~v~e~~~~~g~------~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a-~~l~~~~vl~LDep 159 (257)
.++.+++.+-+.+.+. ...+.....+|+++.+.. +++.+||-|.+|...+. .++++|.+++||||
T Consensus 78 PEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEP 157 (300)
T COG4152 78 PEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEP 157 (300)
T ss_pred hhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCC
Confidence 2346677776555332 234455667899998865 78999999999999866 55678999999999
Q ss_pred HHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccc
Q 025114 160 LEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN 209 (257)
Q Consensus 160 ~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~ 209 (257)
+++| +.+++..|.+++..+|.|+.+.++| |++..|..|+.+.||+..
T Consensus 158 FSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLC---D~llmL~kG~~V~~G~v~ 215 (300)
T COG4152 158 FSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELC---DRLLMLKKGQTVLYGTVE 215 (300)
T ss_pred ccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHh---hhhheecCCceEEeccHH
Confidence 9998 5677778999999999999999999 999899999888888654
No 31
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.96 E-value=4.9e-31 Score=239.25 Aligned_cols=180 Identities=22% Similarity=0.253 Sum_probs=143.9
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh---------
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE--------- 93 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~--------- 93 (257)
++|+++|+++.|+++.+|+++||+|.+ |++++|+||||||||||+|+|+|++ |.+++++.++..
T Consensus 1 ~~L~i~~l~~~~~~~~~l~~isl~i~~---Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~ 77 (353)
T PRK10851 1 MSIEIANIKKSFGRTQVLNDISLDIPS---GQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVG 77 (353)
T ss_pred CEEEEEEEEEEeCCeEEEEEeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEE
Confidence 358999999999998999999999999 9999999999999999999999987 556676654311
Q ss_pred ------hcCCCCCHHHHHHHhCc----------hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcE
Q 025114 94 ------QSVDGTSVAEIFKLYGE----------GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGIS 153 (257)
Q Consensus 94 ------~~~~~~~v~e~~~~~g~----------~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~v 153 (257)
..+..+++.+++..... ....++..++++.+++.+ +++.+|||||+||+++++++. +|++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~l 157 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQI 157 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 12235788888765311 112345567888888854 889999999999999998886 7999
Q ss_pred EEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 154 VWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 154 l~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
++||||+++| ++++.+. |.+++.++||++.+..+| |++..|.+|++..+|++++++
T Consensus 158 lLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~---Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 158 LLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVA---DRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC---CEEEEEECCEEEEEcCHHHHH
Confidence 9999999998 4555444 789999999988888887 888888888877677665554
No 32
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.96 E-value=5.3e-31 Score=240.51 Aligned_cols=182 Identities=21% Similarity=0.230 Sum_probs=144.6
Q ss_pred CcceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-------
Q 025114 25 SASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------- 93 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------- 93 (257)
++++|+++|+++.|+++.+|+++||++++ |++++|+||||||||||+|+|+|++ |.+++++..+..
T Consensus 11 ~~~~L~l~~l~~~~~~~~~l~~vsl~i~~---Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ 87 (375)
T PRK09452 11 LSPLVELRGISKSFDGKEVISNLDLTINN---GEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRH 87 (375)
T ss_pred CCceEEEEEEEEEECCeEEEeeeEEEEeC---CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCC
Confidence 56789999999999998999999999999 9999999999999999999999987 445666654311
Q ss_pred --------hcCCCCCHHHHHHHhC------chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEE
Q 025114 94 --------QSVDGTSVAEIFKLYG------EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVW 155 (257)
Q Consensus 94 --------~~~~~~~v~e~~~~~g------~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~ 155 (257)
..+..+++.+++.+.- ....+++..++++.+++.+ +.+.+|||||+||+++++++. +|++++
T Consensus 88 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llL 167 (375)
T PRK09452 88 VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLL 167 (375)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 1234678988876421 1122344567788888864 889999999999999998886 799999
Q ss_pred EECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 156 LDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 156 LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
||||+++| ++++.+. |.+++.++||.+++..++ |++..|.+|++...++++++.
T Consensus 168 LDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~la---Dri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 168 LDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMS---DRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC---CEEEEEECCEEEEEcCHHHHH
Confidence 99999998 4555443 889999999988777777 888888888877666655444
No 33
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.96 E-value=6.9e-31 Score=237.14 Aligned_cols=179 Identities=17% Similarity=0.180 Sum_probs=141.7
Q ss_pred eEEecceeeeeCc----cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh------
Q 025114 28 VLESGNVHAPIDE----AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------ 93 (257)
Q Consensus 28 ~l~~~~l~~~~~~----~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------ 93 (257)
||+++||+|.|++ .++|+|+||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++..
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~---Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l 77 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPA---GQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSEL 77 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 5899999999952 4799999999999 9999999999999999999999998 455666643311
Q ss_pred ----h----------cCCCCCHHHHHHHh----C--chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-
Q 025114 94 ----Q----------SVDGTSVAEIFKLY----G--EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ- 149 (257)
Q Consensus 94 ----~----------~~~~~~v~e~~~~~----g--~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~- 149 (257)
. .+...|+.+++... + ....+++..++++.+++.+ +++.+|||||+||+.+|++|.
T Consensus 78 ~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~ 157 (343)
T TIGR02314 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALAS 157 (343)
T ss_pred HHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHh
Confidence 0 11246787776542 1 1123345567899998864 789999999999999998887
Q ss_pred CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 150 KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 150 ~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
+|++++||||+++| ++++.+. |.++++++|+++.+..+| |++..|.+|++...|++.+++
T Consensus 158 ~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~---d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 158 NPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRIC---DCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC---CEEEEEECCEEEEEcCHHHHH
Confidence 79999999999998 4566544 889999999998888888 888888888887777665554
No 34
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=9.1e-31 Score=224.24 Aligned_cols=180 Identities=24% Similarity=0.259 Sum_probs=142.7
Q ss_pred ceEEecceeeeeCcc-ccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh--------h
Q 025114 27 SVLESGNVHAPIDEA-QVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI--------E 93 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~-~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~--------~ 93 (257)
++++++++++.|.+. .+|+++||+|++ |+.++|+|+||||||||+++|+|++ |.+++++.++. .
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~---Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~ 78 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEK---GERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELR 78 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECC---CCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhh
Confidence 578999999999775 899999999999 9999999999999999999999998 44566664321 0
Q ss_pred h-----------cCCCCCHHHHHHHhC------chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCc
Q 025114 94 Q-----------SVDGTSVAEIFKLYG------EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGI 152 (257)
Q Consensus 94 ~-----------~~~~~~v~e~~~~~g------~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~ 152 (257)
+ .+..-+|.+-+.+.. .+...++..++++.+++.+ +.+..|||||+||+++|.+++ +|.
T Consensus 79 ~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~ 158 (235)
T COG1122 79 QKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPE 158 (235)
T ss_pred cceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCC
Confidence 0 112456665554421 1234566778899999874 899999999999999998886 899
Q ss_pred EEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 153 SVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 153 vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
+++|||||++| ++++... |.+++.++||++.+..+| |++..|.+|++...|++.+++
T Consensus 159 iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~a---d~v~vl~~G~i~~~g~p~~i~ 227 (235)
T COG1122 159 ILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYA---DRVVVLDDGKILADGDPAEIF 227 (235)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhC---CEEEEEECCEEeecCCHHHHh
Confidence 99999999998 4566555 689999999998888887 888888888776666655444
No 35
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.96 E-value=8.7e-31 Score=239.09 Aligned_cols=181 Identities=20% Similarity=0.204 Sum_probs=140.1
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh---------
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI--------- 92 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~--------- 92 (257)
|++|+++|+++.|+++.+|+++||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 1 m~~l~i~~l~~~~~~~~vl~~vsl~i~~---Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i 77 (369)
T PRK11000 1 MASVTLRNVTKAYGDVVISKDINLDIHE---GEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGV 77 (369)
T ss_pred CCEEEEEEEEEEeCCeEEEeeeEEEEcC---CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCE
Confidence 3469999999999998899999999999 9999999999999999999999997 44555554321
Q ss_pred ---hh---cCCCCCHHHHHHHhC----c--hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEE
Q 025114 93 ---EQ---SVDGTSVAEIFKLYG----E--GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWL 156 (257)
Q Consensus 93 ---~~---~~~~~~v~e~~~~~g----~--~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~L 156 (257)
.+ .+..+|+.+++.... . ...+++..++++.+++.+ +.+..|||||+||+.+++++. +|++++|
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLL 157 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLL 157 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 11 123578888775421 1 122345567888888854 789999999999999998887 7999999
Q ss_pred ECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 157 DVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 157 Dep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
|||+++| ++++... |.+++.++||++.+..+| |++..|.+|++..+++++++.
T Consensus 158 DEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~---d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 158 DEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLA---DKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhC---CEEEEEECCEEEEEcCHHHHH
Confidence 9999998 3444443 789999999987777777 777777777766555554443
No 36
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.2e-30 Score=224.18 Aligned_cols=175 Identities=22% Similarity=0.284 Sum_probs=131.6
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh------------
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI------------ 92 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~------------ 92 (257)
|+++|+++.|+++.+|+|+||+|++ |++++|+||||||||||+|+|+|++ |.+.+++.++.
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRR---GEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 4789999999988899999999999 9999999999999999999999987 44555553221
Q ss_pred -----hh---cCCCCCHHHHHHHhC-------chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcE
Q 025114 93 -----EQ---SVDGTSVAEIFKLYG-------EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGIS 153 (257)
Q Consensus 93 -----~~---~~~~~~v~e~~~~~g-------~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~v 153 (257)
.+ .+...++.+.+.... .....+...++++.+++.+ +.+..|||||+||+.+++++. +|++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~l 157 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPEL 157 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 00 123467877765321 1112334456788888754 788999999999999998876 7999
Q ss_pred EEEECCHHHH-----------HHHHHh-cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccc
Q 025114 154 VWLDVPLEAL-----------AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN 209 (257)
Q Consensus 154 l~LDep~~~L-----------~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~ 209 (257)
++||||+++| ++++.. .|.+++.++|+++.+..+| |++..|.+|++...++++
T Consensus 158 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~---d~v~~l~~G~i~~~g~~~ 222 (235)
T cd03261 158 LLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIA---DRIAVLYDGKIVAEGTPE 222 (235)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhc---CEEEEEECCeEEEecCHH
Confidence 9999999998 345544 3789999999977666666 777666666654444433
No 37
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.96 E-value=5.3e-30 Score=217.47 Aligned_cols=158 Identities=23% Similarity=0.281 Sum_probs=120.0
Q ss_pred eEEecceeeeeCc--cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh--------
Q 025114 28 VLESGNVHAPIDE--AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE-------- 93 (257)
Q Consensus 28 ~l~~~~l~~~~~~--~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~-------- 93 (257)
||+++|+++.|++ +.+|+++||+|++ |++++|+||||||||||+|+|+|++ |.+.+++.++..
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITK---GEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPF 77 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHH
Confidence 4899999999964 4699999999999 9999999999999999999999987 445555533210
Q ss_pred --h----------cCCCCCHHHHHHHh----C--chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CC
Q 025114 94 --Q----------SVDGTSVAEIFKLY----G--EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KG 151 (257)
Q Consensus 94 --~----------~~~~~~v~e~~~~~----g--~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~ 151 (257)
. .+...++.+.+... + .....++..++++.+++.+ +.+..|||||+||+.+++++. +|
T Consensus 78 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p 157 (216)
T TIGR00960 78 LRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKP 157 (216)
T ss_pred HHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 0 11245777766532 1 1112344567888888754 788999999999999998886 79
Q ss_pred cEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhh
Q 025114 152 ISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYT 188 (257)
Q Consensus 152 ~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~ 188 (257)
++++||||+++| ++++++.+.+++.++|+++.+..+|
T Consensus 158 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~ 205 (216)
T TIGR00960 158 PLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYR 205 (216)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC
Confidence 999999999998 3444445788999999966554444
No 38
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.96 E-value=3.1e-30 Score=222.59 Aligned_cols=175 Identities=22% Similarity=0.271 Sum_probs=130.9
Q ss_pred eEEecceeeeeC-ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh----------
Q 025114 28 VLESGNVHAPID-EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI---------- 92 (257)
Q Consensus 28 ~l~~~~l~~~~~-~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~---------- 92 (257)
||+++||++.|+ ++++|+++||++.+ |++++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINP---GEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcC---CCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHH
Confidence 478999999998 78899999999999 9999999999999999999999987 44556553321
Q ss_pred hh----------cCCCCCHHHHHHHhC--------------chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHH
Q 025114 93 EQ----------SVDGTSVAEIFKLYG--------------EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINW 145 (257)
Q Consensus 93 ~~----------~~~~~~v~e~~~~~g--------------~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a 145 (257)
.. .+...++.+.+...- ....+++..++++.+++.+ +.+..|||||+||+.++
T Consensus 78 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 157 (243)
T TIGR02315 78 RRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIA 157 (243)
T ss_pred HhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHH
Confidence 00 112457777664310 0111234456788888754 78899999999999999
Q ss_pred HHhh-CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcc
Q 025114 146 RYMQ-KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANA 208 (257)
Q Consensus 146 ~~l~-~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~ 208 (257)
+++. +|++++||||+++| ++++.+. |.+++.++|+++.+..+| |++..|.+|++...+++
T Consensus 158 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~---d~v~~l~~G~i~~~~~~ 230 (243)
T TIGR02315 158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYA---DRIVGLKAGEIVFDGAP 230 (243)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhc---CeEEEEECCEEEecCCH
Confidence 8876 79999999999998 3445433 788999999987766666 77766666665444443
No 39
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.96 E-value=1.5e-30 Score=231.94 Aligned_cols=178 Identities=22% Similarity=0.238 Sum_probs=136.3
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh----------
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI---------- 92 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~---------- 92 (257)
++|+++||++.|+++.+|+++||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~vsl~i~~---Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i 79 (303)
T TIGR01288 3 VAIDLVGVSKSYGDKVVVNDLSFTIAR---GECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAI 79 (303)
T ss_pred cEEEEEeEEEEeCCeEEEcceeEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcE
Confidence 479999999999998999999999999 9999999999999999999999987 44555543220
Q ss_pred ---hh---cCCCCCHHHHHHHhCc------hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEE
Q 025114 93 ---EQ---SVDGTSVAEIFKLYGE------GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWL 156 (257)
Q Consensus 93 ---~~---~~~~~~v~e~~~~~g~------~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~L 156 (257)
.+ .+...++.+.+...+. ...+....++++.+++.+ +.+..|||||+||+.+++++. +|++++|
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL 159 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLIL 159 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 00 1135678877653221 111233456788888754 788999999999999998876 7999999
Q ss_pred ECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccc
Q 025114 157 DVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANA 210 (257)
Q Consensus 157 Dep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~ 210 (257)
|||+++| ++++++.|.+++.++|+++.+..+| |++..|.+|++...++++.
T Consensus 160 DEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~---d~i~~l~~G~i~~~g~~~~ 221 (303)
T TIGR01288 160 DEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLC---DRLCVLESGRKIAEGRPHA 221 (303)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhC---CEEEEEECCEEEEEcCHHH
Confidence 9999998 4555555889999999988777777 7777777776655554433
No 40
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2e-30 Score=223.49 Aligned_cols=175 Identities=23% Similarity=0.260 Sum_probs=130.7
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh-----------
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI----------- 92 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~----------- 92 (257)
+|+++||++.|+++.+|+++||+|.+ |++++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~ 78 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPS---GELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGF 78 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEE
Confidence 58999999999988899999999999 9999999999999999999999987 44555553321
Q ss_pred -hh---cCCCCCHHHHHHHh----Cc------hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEE
Q 025114 93 -EQ---SVDGTSVAEIFKLY----GE------GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISV 154 (257)
Q Consensus 93 -~~---~~~~~~v~e~~~~~----g~------~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl 154 (257)
.+ .+...++.+.+... +. ....+...++++.+++.+ +.+..|||||+||+.+++++. +|+++
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 158 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVL 158 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 01 11246777766432 10 111233456788888754 788999999999999998876 79999
Q ss_pred EEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcc
Q 025114 155 WLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANA 208 (257)
Q Consensus 155 ~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~ 208 (257)
+||||+++| +.+++.. |.+++.++|+++.+..+| |++..|.+|++...+++
T Consensus 159 llDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~---d~i~~l~~G~i~~~~~~ 221 (239)
T cd03296 159 LLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVA---DRVVVMNKGRIEQVGTP 221 (239)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhC---CEEEEEECCeEEEecCH
Confidence 999999998 3455443 788999999976655555 67666666655444443
No 41
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.96 E-value=1.5e-30 Score=236.66 Aligned_cols=179 Identities=20% Similarity=0.209 Sum_probs=141.9
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh------CCceecchhhhh--------
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL------GYSFFDCDTLIE-------- 93 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l------g~~~~d~~~~~~-------- 93 (257)
.|+++||++.|+++.+|+++||+|.+ |++++|+||||||||||+|+|+|++ |.+++++.++..
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vsl~i~~---Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~i 81 (362)
T TIGR03258 5 GIRIDHLRVAYGANTVLDDLSLEIEA---GELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGL 81 (362)
T ss_pred EEEEEEEEEEECCeEEEeeeEEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCE
Confidence 37899999999998999999999999 9999999999999999999999986 444455543210
Q ss_pred -------hcCCCCCHHHHHHHhCc------hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEE
Q 025114 94 -------QSVDGTSVAEIFKLYGE------GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWL 156 (257)
Q Consensus 94 -------~~~~~~~v~e~~~~~g~------~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~L 156 (257)
..+..+|+.+++.+.-. ...+.+..++++.+++.+ +.+.+|||||+||++++++|. +|++++|
T Consensus 82 g~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLL 161 (362)
T TIGR03258 82 ALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLL 161 (362)
T ss_pred EEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 12246788888764211 122345567888888864 889999999999999998887 7999999
Q ss_pred ECCHHHH-----------HHHHHhc--CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 157 DVPLEAL-----------AQRIAAV--GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 157 Dep~~~L-----------~~rl~~~--g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
|||+++| ++++.+. |.+++.++||++++..+| |++..|.+|++...|+++++.
T Consensus 162 DEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~---dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 162 DEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLA---DKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred cCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhC---CEEEEEECCEEEEEcCHHHHH
Confidence 9999998 3455544 789999999988877777 888888888877777665554
No 42
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.1e-30 Score=223.61 Aligned_cols=189 Identities=18% Similarity=0.252 Sum_probs=140.8
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh----------
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE---------- 93 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~---------- 93 (257)
+|+++|+++.|+++.+|+++||++++ |++++|+|+||||||||+++|+|++ |.+.+++.++..
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 78 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPT---GKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRL 78 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcC---CcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhhe
Confidence 68999999999988999999999999 9999999999999999999999987 444555433210
Q ss_pred ----h---cCCCCCHHHHHHHhC----------chHHHHHHHHHHHHhccc---CccccccChhHhHHHHHHHHhh-CCc
Q 025114 94 ----Q---SVDGTSVAEIFKLYG----------EGFFREKETEVLQKLSLM---RQLVVSTGGGAVTRPINWRYMQ-KGI 152 (257)
Q Consensus 94 ----~---~~~~~~v~e~~~~~g----------~~~~~~~~~~~l~~l~~~---~~~v~~lsgG~~qr~~~a~~l~-~~~ 152 (257)
+ .+.+.++.+++.... .........++++.+++. ++.+..||||++||+.+++++. +|+
T Consensus 79 ~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 158 (255)
T PRK11231 79 ALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTP 158 (255)
T ss_pred EEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 0 112457777665421 011223345677777775 3788999999999999998876 799
Q ss_pred EEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecchhhhhhc
Q 025114 153 SVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKL 221 (257)
Q Consensus 153 vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~~l~~~~ 221 (257)
+++||||+++| ++++...+.+++.++|+++.+..+| |++..+.+|++...++++++...+.+...|
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~---d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 235 (255)
T PRK11231 159 VVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYC---DHLVVLANGHVMAQGTPEEVMTPGLLRTVF 235 (255)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhc---CEEEEEECCeEEEEcCHHHhcCHHHHHHHh
Confidence 99999999998 3445445789999999987777776 777777777766555555555444455555
Q ss_pred c
Q 025114 222 G 222 (257)
Q Consensus 222 ~ 222 (257)
+
T Consensus 236 ~ 236 (255)
T PRK11231 236 D 236 (255)
T ss_pred C
Confidence 4
No 43
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.6e-30 Score=236.25 Aligned_cols=182 Identities=20% Similarity=0.226 Sum_probs=144.1
Q ss_pred CcceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-------
Q 025114 25 SASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------- 93 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------- 93 (257)
++++|+++|+++.|+++.+|+++||+|++ |++++|+||||||||||+|+|+|+. |.+++++..+..
T Consensus 16 ~~~~l~l~~v~~~~~~~~~l~~vsl~i~~---Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ 92 (377)
T PRK11607 16 LTPLLEIRNLTKSFDGQHAVDDVSLTIYK---GEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRP 92 (377)
T ss_pred CCceEEEEeEEEEECCEEEEeeeEEEEcC---CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCC
Confidence 35679999999999988899999999999 9999999999999999999999997 456666654311
Q ss_pred --------hcCCCCCHHHHHHHhC------chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEE
Q 025114 94 --------QSVDGTSVAEIFKLYG------EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVW 155 (257)
Q Consensus 94 --------~~~~~~~v~e~~~~~g------~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~ 155 (257)
..+..+|+.+++...- ....+++..++++.+++.+ +.+..|||||+||+++++++. +|.+++
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLL 172 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLL 172 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 1234678988876421 1223345567888888864 889999999999999998887 799999
Q ss_pred EECCHHHH-----------HHHHHh-cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 156 LDVPLEAL-----------AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 156 LDep~~~L-----------~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
||||+++| +.++.+ .|.+++.++||.+++..+| |++..|.+|++...|+++++.
T Consensus 173 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~la---Dri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 173 LDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMA---GRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhC---CEEEEEeCCEEEEEcCHHHHH
Confidence 99999998 234433 4789999999988777777 888888888876666655444
No 44
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.3e-30 Score=222.29 Aligned_cols=181 Identities=17% Similarity=0.193 Sum_probs=134.8
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh--------h
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI--------E 93 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~--------~ 93 (257)
|++|+++|+++.|+++.+|+++||++++ |++++|+||||||||||+|+|+|++ |.+.+++.++. .
T Consensus 1 ~~~l~~~~l~~~~~~~~~l~~~sl~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (241)
T PRK10895 1 MATLTAKNLAKAYKGRRVVEDVSLTVNS---GEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR 77 (241)
T ss_pred CceEEEeCcEEEeCCEEEEeeeeEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence 3579999999999988999999999999 9999999999999999999999987 44555553221 0
Q ss_pred h----------cCCCCCHHHHHHHhC-------chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCc
Q 025114 94 Q----------SVDGTSVAEIFKLYG-------EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGI 152 (257)
Q Consensus 94 ~----------~~~~~~v~e~~~~~g-------~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~ 152 (257)
. .+...++.+.+.... ....+....++++.+++.+ +.+..||||++||+.+++++. +|.
T Consensus 78 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (241)
T PRK10895 78 RGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPK 157 (241)
T ss_pred hCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCC
Confidence 0 122457777664321 0112233456788887753 778999999999999998876 799
Q ss_pred EEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 153 SVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 153 vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
+++||||+++| +++++..|.+++.++|+++.+..+| |++..|.+|++...+++++++
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~---d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 158 FILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVC---ERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhc---CEEEEEeCCeEEeeCCHHHHh
Confidence 99999999988 3444445788999999976666666 777667677665555544443
No 45
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.96 E-value=4.1e-30 Score=220.34 Aligned_cols=172 Identities=22% Similarity=0.239 Sum_probs=128.6
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh------------
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI------------ 92 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~------------ 92 (257)
|+++||++.|+++.+|+++||++.+ |++++|+||||||||||+|+|+|++ |.+++++..+.
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQ---GEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecC---CcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 4789999999988899999999999 9999999999999999999999987 44455543210
Q ss_pred ---hh---cCCCCCHHHHHHHh----Cc--hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEE
Q 025114 93 ---EQ---SVDGTSVAEIFKLY----GE--GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWL 156 (257)
Q Consensus 93 ---~~---~~~~~~v~e~~~~~----g~--~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~L 156 (257)
.+ .+.+.++.+.+... +. ........++++.+++.+ +.+..||||++||+.+++++. +|++++|
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 157 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLL 157 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 00 11245777766532 11 112233456788888754 788999999999999998876 7999999
Q ss_pred ECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHh
Q 025114 157 DVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYA 206 (257)
Q Consensus 157 Dep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~ 206 (257)
|||+++| ++++...+.++++++|+++.+..+| |++..|.+|++...+
T Consensus 158 DEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~---d~i~~l~~G~i~~~~ 215 (232)
T cd03218 158 DEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSIT---DRAYIIYEGKVLAEG 215 (232)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC---CEEEEEECCeEEEEe
Confidence 9999998 3455445788999999977666666 676666666544333
No 46
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=9.3e-30 Score=218.37 Aligned_cols=168 Identities=21% Similarity=0.270 Sum_probs=141.2
Q ss_pred cceEEecceeeeeCc---------cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh
Q 025114 26 ASVLESGNVHAPIDE---------AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI 92 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~---------~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~ 92 (257)
+++++++|+++.|.- ..+++||||+|.+ ||+++|||.|||||||++|+|.|++ |.+++++.++.
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~---ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~ 78 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKE---GETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDIT 78 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecceeEEEcC---CCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchh
Confidence 568999999999952 3799999999999 9999999999999999999999998 45677666532
Q ss_pred hhcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC----ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH----
Q 025114 93 EQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR----QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL---- 163 (257)
Q Consensus 93 ~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~----~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L---- 163 (257)
.. + ....+++..++|+.+++.. +.+.++||||+||+.+|+++. +|.++++|||++.|
T Consensus 79 ~~-----~---------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSi 144 (268)
T COG4608 79 KL-----S---------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSV 144 (268)
T ss_pred hc-----c---------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhH
Confidence 21 1 1223456778899998754 899999999999999999987 89999999999998
Q ss_pred -------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceec
Q 025114 164 -------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVS 213 (257)
Q Consensus 164 -------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~ 213 (257)
+..+++. |.+...++||+..+..+| |++..|+.|+++-.++.++++.
T Consensus 145 qaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is---dri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 145 QAQILNLLKDLQEELGLTYLFISHDLSVVRYIS---DRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc---ccEEEEecCceeEecCHHHHhh
Confidence 4566544 899999999999888888 9999999999998888777764
No 47
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=7.4e-30 Score=223.28 Aligned_cols=192 Identities=25% Similarity=0.284 Sum_probs=141.6
Q ss_pred CcceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh--------
Q 025114 25 SASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI-------- 92 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~-------- 92 (257)
+.++|+++|+++.|+++.+|+++||+|.+ |++++|+|+||||||||+|+|+|++ |.+++++.++.
T Consensus 8 ~~~~l~i~~l~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 84 (265)
T PRK10575 8 SDTTFALRNVSFRVPGRTLLHPLSLTFPA---GKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFA 84 (265)
T ss_pred CCceEEEeeEEEEECCEEEEeeeeeEEcC---CCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHh
Confidence 34679999999999988999999999999 9999999999999999999999987 45566654321
Q ss_pred ------hh---cCCCCCHHHHHHHhCc----------hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-
Q 025114 93 ------EQ---SVDGTSVAEIFKLYGE----------GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ- 149 (257)
Q Consensus 93 ------~~---~~~~~~v~e~~~~~g~----------~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~- 149 (257)
.+ .+.+.++.+.+..... ....+...++++.+++.+ +.+.+||||++||+.+++++.
T Consensus 85 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~ 164 (265)
T PRK10575 85 RKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQ 164 (265)
T ss_pred hheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 11 1234577777654210 112234456788888753 788999999999999998876
Q ss_pred CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecchhh
Q 025114 150 KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENI 217 (257)
Q Consensus 150 ~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~~l 217 (257)
+|++++||||+++| +.++.+. |.+++.++|+++.+..+| |++..|.+|++...++++++...+.+
T Consensus 165 ~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~---d~i~~l~~G~i~~~~~~~~~~~~~~~ 241 (265)
T PRK10575 165 DSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYC---DYLVALRGGEMIAQGTPAELMRGETL 241 (265)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC---CEEEEEECCeEEEecCHHHhcCHHHH
Confidence 79999999999998 3444433 788999999987766666 77767777776545554444433334
Q ss_pred hhhcc
Q 025114 218 AVKLG 222 (257)
Q Consensus 218 ~~~~~ 222 (257)
...|+
T Consensus 242 ~~~~~ 246 (265)
T PRK10575 242 EQIYG 246 (265)
T ss_pred HHHhC
Confidence 44443
No 48
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.5e-30 Score=220.94 Aligned_cols=180 Identities=22% Similarity=0.204 Sum_probs=131.7
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh--------h
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI--------E 93 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~--------~ 93 (257)
+++|+++|+++.|+++.+|+++||+|++ |++++|+||||||||||+++|+|++ |.+.+++.++. .
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 79 (237)
T PRK11614 3 KVMLSFDKVSAHYGKIQALHEVSLHINQ---GEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMR 79 (237)
T ss_pred ccEEEEEeEEEeeCCceeeeeeEEEEcC---CcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHH
Confidence 4579999999999988899999999999 9999999999999999999999987 33445443210 0
Q ss_pred ----------hcCCCCCHHHHHHHhC----chHHHHHHHHHHHHh-ccc---CccccccChhHhHHHHHHHHhh-CCcEE
Q 025114 94 ----------QSVDGTSVAEIFKLYG----EGFFREKETEVLQKL-SLM---RQLVVSTGGGAVTRPINWRYMQ-KGISV 154 (257)
Q Consensus 94 ----------~~~~~~~v~e~~~~~g----~~~~~~~~~~~l~~l-~~~---~~~v~~lsgG~~qr~~~a~~l~-~~~vl 154 (257)
..+.+.++.+.+.... .........++++.+ ++. ++.+..||||++||+.+++++. +|+++
T Consensus 80 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~il 159 (237)
T PRK11614 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLL 159 (237)
T ss_pred hCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 0122457777665421 111222334555655 233 3688999999999999998876 79999
Q ss_pred EEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccce
Q 025114 155 WLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANAR 211 (257)
Q Consensus 155 ~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~ 211 (257)
+||||+++| ++++.+.|.+++.++|+++.+..+| |++..+.+|++...++++.+
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~---d~i~~l~~G~i~~~~~~~~~ 224 (237)
T PRK11614 160 LLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLA---DRGYVLENGHVVLEDTGDAL 224 (237)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhC---CEEEEEeCCEEEeeCCHHHH
Confidence 999999998 3455555789999999977666666 77766666665544444433
No 49
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=5.2e-30 Score=224.96 Aligned_cols=189 Identities=20% Similarity=0.180 Sum_probs=139.9
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh-----------
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI----------- 92 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~----------- 92 (257)
||+++||++.|+++.+|+++||+|.+ |++++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 77 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSL---SPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQ 77 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcC---CCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHh
Confidence 58999999999988899999999999 9999999999999999999999987 44555554321
Q ss_pred -----hhc----CCCCCHHHHHHHh----C--chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcE
Q 025114 93 -----EQS----VDGTSVAEIFKLY----G--EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGIS 153 (257)
Q Consensus 93 -----~~~----~~~~~v~e~~~~~----g--~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~v 153 (257)
.+. ....++.+.+... + .....+...++++.+++.+ +.+..||||++||+.+++++. +|++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~l 157 (271)
T PRK13638 78 QVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARY 157 (271)
T ss_pred heEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCE
Confidence 000 0112344443321 1 1112233456778877743 788999999999999998876 7999
Q ss_pred EEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecchhhhhhcc
Q 025114 154 VWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLG 222 (257)
Q Consensus 154 l~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~~l~~~~~ 222 (257)
++||||+++| +.++...|.+++.++|+++.+..+| |++..|.+|++...+++++++....+...|+
T Consensus 158 llLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~---d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 234 (271)
T PRK13638 158 LLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEIS---DAVYVLRQGQILTHGAPGEVFACTEAMEQAG 234 (271)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC---CEEEEEECCEEEEeCCHHHHhcChhHHHhcC
Confidence 9999999998 3455445788999999987777777 8887888888777777666655554444454
No 50
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=6.9e-30 Score=220.02 Aligned_cols=169 Identities=24% Similarity=0.327 Sum_probs=126.7
Q ss_pred EEecceeeeeCc-cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh----------
Q 025114 29 LESGNVHAPIDE-AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE---------- 93 (257)
Q Consensus 29 l~~~~l~~~~~~-~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~---------- 93 (257)
|+++||++.|++ +.+|+++||++.+ |++++|+||||||||||+|+|+|++ |.+++++.++..
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINP---GEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLR 77 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcC---CCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHH
Confidence 478999999987 7899999999999 9999999999999999999999987 445555533210
Q ss_pred h----------cCCCCCHHHHHHHhC--------------chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHH
Q 025114 94 Q----------SVDGTSVAEIFKLYG--------------EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWR 146 (257)
Q Consensus 94 ~----------~~~~~~v~e~~~~~g--------------~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~ 146 (257)
. .+...++.+.+.... .....+...++++.+++.+ +.+..|||||+||+.+++
T Consensus 78 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~ 157 (241)
T cd03256 78 RQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIAR 157 (241)
T ss_pred hccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHH
Confidence 0 112467777664311 0112233456788888753 788999999999999998
Q ss_pred Hhh-CCcEEEEECCHHHH-----------HHHHHh-cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHH
Q 025114 147 YMQ-KGISVWLDVPLEAL-----------AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGE 203 (257)
Q Consensus 147 ~l~-~~~vl~LDep~~~L-----------~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~ 203 (257)
++. +|++++||||+++| ++++.. .|.++++++|+++.+..+| |++..|.+|++.
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~---d~v~~l~~G~i~ 224 (241)
T cd03256 158 ALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYA---DRIVGLKDGRIV 224 (241)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC---CEEEEEECCEEE
Confidence 876 79999999999998 345543 3788999999977666666 666566555543
No 51
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.96 E-value=5.5e-30 Score=220.09 Aligned_cols=169 Identities=23% Similarity=0.265 Sum_probs=127.1
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh--------h---
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI--------E--- 93 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~--------~--- 93 (257)
|+++|+++.|+++.+|+++||+|++ |++++|+||||||||||+++|+|++ |.+++++..+. .
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRP---GEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecC---CcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 4789999999988899999999999 9999999999999999999999987 44555543211 0
Q ss_pred ----h---cCCCCCHHHHHHHhCc----------------hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHH
Q 025114 94 ----Q---SVDGTSVAEIFKLYGE----------------GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRY 147 (257)
Q Consensus 94 ----~---~~~~~~v~e~~~~~g~----------------~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~ 147 (257)
+ .+.+.++.+.+..... ....+...++++.+++.+ +.+..||||++||+.++++
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 157 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARA 157 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHH
Confidence 0 1234678777643211 111234457788888754 7889999999999999988
Q ss_pred hh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHH
Q 025114 148 MQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGE 203 (257)
Q Consensus 148 l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~ 203 (257)
+. +|.+++||||+++| ++++.+.|.+++.++|+++.+..+| |++..+.+|++.
T Consensus 158 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~---d~i~~l~~G~i~ 222 (236)
T cd03219 158 LATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLA---DRVTVLDQGRVI 222 (236)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhC---CEEEEEeCCEEE
Confidence 76 79999999999998 3444445788999999977666665 666566555443
No 52
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.96 E-value=7.5e-30 Score=229.73 Aligned_cols=182 Identities=17% Similarity=0.237 Sum_probs=141.1
Q ss_pred CcceEEecceeeeeCc-------------cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceec
Q 025114 25 SASVLESGNVHAPIDE-------------AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFD 87 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~-------------~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d 87 (257)
.+++|+++||++.|+. ..+|+|+||+|.+ |++++|+|+||||||||+++|+|++ |.++++
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~---Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~ 81 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYE---GETLGVVGESGCGKSTFARAIIGLVKATDGEVAWL 81 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcC---CCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEEC
Confidence 4578999999999962 4699999999999 9999999999999999999999988 445666
Q ss_pred chhhhh-----------------h-----cCCCCCHHHHHHH----h----CchHHHHHHHHHHHHhccc----Cccccc
Q 025114 88 CDTLIE-----------------Q-----SVDGTSVAEIFKL----Y----GEGFFREKETEVLQKLSLM----RQLVVS 133 (257)
Q Consensus 88 ~~~~~~-----------------~-----~~~~~~v~e~~~~----~----g~~~~~~~~~~~l~~l~~~----~~~v~~ 133 (257)
+.++.. + ....+++.+.+.. . .....++...++++.+++. ++.+.+
T Consensus 82 G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~ 161 (331)
T PRK15079 82 GKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHE 161 (331)
T ss_pred CEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCccc
Confidence 544310 0 1124577776542 1 1122334456788888883 378999
Q ss_pred cChhHhHHHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHH
Q 025114 134 TGGGAVTRPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEE 200 (257)
Q Consensus 134 lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~ 200 (257)
|||||+||+.+|+++. +|+++++|||+++| ++++.+. |.++++++||++.+..+| |++..|++|
T Consensus 162 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~---dri~vl~~G 238 (331)
T PRK15079 162 FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHIS---DRVLVMYLG 238 (331)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhC---CEEEEEECC
Confidence 9999999999998876 79999999999998 4555543 889999999988888787 888888888
Q ss_pred HHHHHhccccee
Q 025114 201 RGEAYANANARV 212 (257)
Q Consensus 201 r~~~y~~~~~~~ 212 (257)
++...++++.++
T Consensus 239 ~ive~g~~~~i~ 250 (331)
T PRK15079 239 HAVELGTYDEVY 250 (331)
T ss_pred EEEEEcCHHHHH
Confidence 877666655544
No 53
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.96 E-value=8.7e-30 Score=222.04 Aligned_cols=177 Identities=24% Similarity=0.274 Sum_probs=133.3
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh-----------
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI----------- 92 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~----------- 92 (257)
+|+++|+++.|+++.+|+++||+|++ |++++|+|+||||||||+++|+|++ |.+++++.++.
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~---Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRP---GEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 58999999999988899999999999 9999999999999999999999987 44555554321
Q ss_pred ---hh---cCCCCCHHHHHHHhCc------hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-------C
Q 025114 93 ---EQ---SVDGTSVAEIFKLYGE------GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-------K 150 (257)
Q Consensus 93 ---~~---~~~~~~v~e~~~~~g~------~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-------~ 150 (257)
.+ .....++.+.+..... ........++++.+++.+ +.+.+||||++||+.+++++. +
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~ 158 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGP 158 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCC
Confidence 11 1134577777654211 112233456788887753 789999999999999998886 7
Q ss_pred CcEEEEECCHHHH-----------HHHHH-hcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccc
Q 025114 151 GISVWLDVPLEAL-----------AQRIA-AVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANA 210 (257)
Q Consensus 151 ~~vl~LDep~~~L-----------~~rl~-~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~ 210 (257)
|.+++||||+++| ++++. ..|.+++.++|+++.+..+| |++..|.+|++...+++++
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~---d~i~~l~~G~i~~~~~~~~ 227 (258)
T PRK13548 159 PRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYA---DRIVLLHQGRLVADGTPAE 227 (258)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhc---CEEEEEECCEEEeeCCHHH
Confidence 9999999999998 45554 45788999999977666666 7776666665544444433
No 54
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=6.7e-30 Score=217.48 Aligned_cols=168 Identities=23% Similarity=0.264 Sum_probs=126.1
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh------------
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI------------ 92 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~------------ 92 (257)
|+++|+++.|+++.+|+++||++.+ |++++|+||||||||||+|+|+|++ |.+++++..+.
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRR---GEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEE
Confidence 5789999999988999999999999 9999999999999999999999987 34455443211
Q ss_pred -hh---cCCCCCHHHHHHHh----Cc--hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEEC
Q 025114 93 -EQ---SVDGTSVAEIFKLY----GE--GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDV 158 (257)
Q Consensus 93 -~~---~~~~~~v~e~~~~~----g~--~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDe 158 (257)
.+ .+...++.+.+... +. ....+...++++.+++.+ +++..|||||+||+.+++++. +|++++|||
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDE 157 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDE 157 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 00 11245777766432 21 112234567788888754 788999999999999998876 799999999
Q ss_pred CHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHH
Q 025114 159 PLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERG 202 (257)
Q Consensus 159 p~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~ 202 (257)
|+++| ++++... |.+++.++|+++.+..+| +++..+.+|++
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~---d~i~~l~~G~i 210 (220)
T cd03265 158 PTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLC---DRVAIIDHGRI 210 (220)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC---CEEEEEeCCEE
Confidence 99998 3444444 788999999976666665 66655655544
No 55
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=6.5e-30 Score=216.46 Aligned_cols=164 Identities=25% Similarity=0.334 Sum_probs=122.2
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh------------
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI------------ 92 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~------------ 92 (257)
|+++|+++.|+++++|+++||+|.+ |++++|+||||||||||+++|+|++ |.+.+++.++.
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEP---GEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEE
Confidence 4789999999988899999999999 9999999999999999999999987 44455543321
Q ss_pred hh---cCCCCCHHHHHHHh----C--chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECC
Q 025114 93 EQ---SVDGTSVAEIFKLY----G--EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVP 159 (257)
Q Consensus 93 ~~---~~~~~~v~e~~~~~----g--~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep 159 (257)
.+ .+...++.+.+... + .....+...++++.+++.+ +.+..|||||+||+.+++++. +|++++||||
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEP 157 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEP 157 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 00 12246777766432 1 1112234457788888754 778999999999999998876 7999999999
Q ss_pred HHHH-----------HHHHHh-cCCCCccccCCCCCCchhhHHHHHHHHHH
Q 025114 160 LEAL-----------AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTLW 198 (257)
Q Consensus 160 ~~~L-----------~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l~ 198 (257)
+++| ++++.. .|.+++.++|+++.+..+| |++..|.
T Consensus 158 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~---d~v~~l~ 205 (213)
T cd03259 158 LSALDAKLREELREELKELQRELGITTIYVTHDQEEALALA---DRIAVMN 205 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhc---CEEEEEE
Confidence 9998 344443 3788999999965555554 5543333
No 56
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.95 E-value=1.1e-29 Score=220.20 Aligned_cols=175 Identities=22% Similarity=0.199 Sum_probs=130.4
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh----------
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI---------- 92 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~---------- 92 (257)
++|+++||++.|+++.+|+|+||+|++ |++++|+||||||||||+++|+|++ |.+++++..+.
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (250)
T PRK11264 2 SAIEVKNLVKKFHGQTVLHGIDLEVKP---GEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKG 78 (250)
T ss_pred CcEEEeceEEEECCeeeeccceEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhh
Confidence 479999999999988899999999999 9999999999999999999999987 44455443211
Q ss_pred -----hh----------cCCCCCHHHHHHHh-----Cc--hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHH
Q 025114 93 -----EQ----------SVDGTSVAEIFKLY-----GE--GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRY 147 (257)
Q Consensus 93 -----~~----------~~~~~~v~e~~~~~-----g~--~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~ 147 (257)
.. .+...++.+.+... +. ....+...++++.+++.+ +.+..|||||+||+.++++
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~a 158 (250)
T PRK11264 79 LIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARA 158 (250)
T ss_pred HHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHH
Confidence 00 11246777766431 11 112234456788888754 7889999999999999988
Q ss_pred hh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhc
Q 025114 148 MQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN 207 (257)
Q Consensus 148 l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~ 207 (257)
+. +|++++||||+++| ++++...|.+++.++|+++.+..+| |++..|.+|++...++
T Consensus 159 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~---d~i~~l~~G~i~~~~~ 227 (250)
T PRK11264 159 LAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVA---DRAIFMDQGRIVEQGP 227 (250)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc---CEEEEEECCEEEEeCC
Confidence 76 79999999999998 3445445788999999976665565 6766666665443333
No 57
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=9.2e-30 Score=228.84 Aligned_cols=181 Identities=14% Similarity=0.175 Sum_probs=138.3
Q ss_pred cceEEecceeeeeCc----cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC--------Cceecchhhhh
Q 025114 26 ASVLESGNVHAPIDE----AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG--------YSFFDCDTLIE 93 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~----~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg--------~~~~d~~~~~~ 93 (257)
|.+|+++||++.|+. ..+|+||||+|.+ |++++|+|+||||||||+++|+|++. .+++++.++..
T Consensus 1 m~~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~---Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~ 77 (326)
T PRK11022 1 MALLNVDKLSVHFGDESAPFRAVDRISYSVKQ---GEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQR 77 (326)
T ss_pred CceEEEeCeEEEECCCCccEEEEeeeEEEECC---CCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCc
Confidence 457999999999976 4699999999999 99999999999999999999999874 23566544310
Q ss_pred ------------------hc-----CCCCCHHHHHH----Hh-C--chHHHHHHHHHHHHhccc------CccccccChh
Q 025114 94 ------------------QS-----VDGTSVAEIFK----LY-G--EGFFREKETEVLQKLSLM------RQLVVSTGGG 137 (257)
Q Consensus 94 ------------------~~-----~~~~~v~e~~~----~~-g--~~~~~~~~~~~l~~l~~~------~~~v~~lsgG 137 (257)
+. ...+++.+.+. .. + ....+++..++++.+++. ++.+.+||||
T Consensus 78 ~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgG 157 (326)
T PRK11022 78 ISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGG 157 (326)
T ss_pred CCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHH
Confidence 00 01234443322 11 1 112234456788999885 2688999999
Q ss_pred HhHHHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHh-cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHH
Q 025114 138 AVTRPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEA 204 (257)
Q Consensus 138 ~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~ 204 (257)
|+||+.+++++. +|+++++||||++| ++++++ .|.++++++||++.+..+| |++..|++|++..
T Consensus 158 q~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~a---dri~vm~~G~ive 234 (326)
T PRK11022 158 MSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAA---HKIIVMYAGQVVE 234 (326)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC---CEEEEEECCEEEE
Confidence 999999998886 79999999999998 455554 4889999999988887787 8998999998887
Q ss_pred Hhccccee
Q 025114 205 YANANARV 212 (257)
Q Consensus 205 y~~~~~~~ 212 (257)
+|++++++
T Consensus 235 ~g~~~~~~ 242 (326)
T PRK11022 235 TGKAHDIF 242 (326)
T ss_pred ECCHHHHh
Confidence 77766554
No 58
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.95 E-value=3.1e-29 Score=212.38 Aligned_cols=158 Identities=24% Similarity=0.274 Sum_probs=119.1
Q ss_pred eEEecceeeee-CccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh----------
Q 025114 28 VLESGNVHAPI-DEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI---------- 92 (257)
Q Consensus 28 ~l~~~~l~~~~-~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~---------- 92 (257)
||+++|+++.| +++.+|+|+||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~---G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRK---GEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLL 77 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 47899999999 567899999999999 9999999999999999999999987 44455543221
Q ss_pred hh----------cCCCCCHHHHHHHh----C--chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCc
Q 025114 93 EQ----------SVDGTSVAEIFKLY----G--EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGI 152 (257)
Q Consensus 93 ~~----------~~~~~~v~e~~~~~----g--~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~ 152 (257)
.. .+...++.+.+... + .....+...++++.+++.+ +.+..|||||+||+.+++++. +|+
T Consensus 78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (214)
T TIGR02673 78 RRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPP 157 (214)
T ss_pred HhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCC
Confidence 00 11245677665432 1 1112334457788888754 678999999999999998876 799
Q ss_pred EEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhh
Q 025114 153 SVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYT 188 (257)
Q Consensus 153 vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~ 188 (257)
+++||||+++| ++++.+.+.+++.++|+++.+..+|
T Consensus 158 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~ 204 (214)
T TIGR02673 158 LLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVA 204 (214)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhc
Confidence 99999999998 3444445788999999966554444
No 59
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.95 E-value=1.1e-29 Score=219.17 Aligned_cols=176 Identities=19% Similarity=0.226 Sum_probs=132.3
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh--------hh
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI--------EQ 94 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~--------~~ 94 (257)
++|+++|+++.|+++++|+++||+|.+ |++++|+|+||||||||+|+|+|.+ |.+++++..+. ..
T Consensus 1 ~~i~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (242)
T TIGR03411 1 PILYLEGLSVSFDGFKALNDLSLYVDP---GELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77 (242)
T ss_pred CeEEEEeeEEEcCCeEEeeeeeEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhc
Confidence 368999999999988899999999999 9999999999999999999999987 44555553221 00
Q ss_pred ----------cCCCCCHHHHHHHhCc--------------hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHH
Q 025114 95 ----------SVDGTSVAEIFKLYGE--------------GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRY 147 (257)
Q Consensus 95 ----------~~~~~~v~e~~~~~g~--------------~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~ 147 (257)
.+.+.++.+++..... ...+....++++.+++.+ +.+..||||++|++.++++
T Consensus 78 ~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~lara 157 (242)
T TIGR03411 78 GIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGML 157 (242)
T ss_pred CeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 1234688877654211 112234457788888754 7889999999999999988
Q ss_pred hh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccc
Q 025114 148 MQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN 209 (257)
Q Consensus 148 l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~ 209 (257)
+. +|.+++||||+++| ++++.. +.+++.++|+++.+..+| |++..+.+|++...++++
T Consensus 158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~---d~i~~l~~g~~~~~~~~~ 227 (242)
T TIGR03411 158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSIA---DKVTVLHQGSVLAEGSLD 227 (242)
T ss_pred HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhC---CEEEEEECCeEEeeCCHH
Confidence 86 79999999999998 344443 578999999977666666 777666666655444433
No 60
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.95 E-value=1.2e-29 Score=221.61 Aligned_cols=177 Identities=21% Similarity=0.246 Sum_probs=133.6
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC-------Cceecchhhh-------
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG-------YSFFDCDTLI------- 92 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg-------~~~~d~~~~~------- 92 (257)
++|+++||++.|+++.+|+++||++.+ |++++|+||||||||||+++|+|++. .+++++..+.
T Consensus 3 ~~l~~~nl~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~ 79 (262)
T PRK09984 3 TIIRVEKLAKTFNQHQALHAVDLNIHH---GEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79 (262)
T ss_pred cEEEEeeEEEEeCCeEEEecceEEEcC---CcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccch
Confidence 589999999999999999999999999 99999999999999999999999973 3444443221
Q ss_pred ------------hh---cCCCCCHHHHHHHhCc--------------hHHHHHHHHHHHHhcccC---ccccccChhHhH
Q 025114 93 ------------EQ---SVDGTSVAEIFKLYGE--------------GFFREKETEVLQKLSLMR---QLVVSTGGGAVT 140 (257)
Q Consensus 93 ------------~~---~~~~~~v~e~~~~~g~--------------~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~q 140 (257)
.+ .+...++.+.+..... ...+....++++.+++.+ +.+..||||++|
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 159 (262)
T PRK09984 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQ 159 (262)
T ss_pred hHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHH
Confidence 00 1134677777653210 111234567888888753 788999999999
Q ss_pred HHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHh-cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhc
Q 025114 141 RPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN 207 (257)
Q Consensus 141 r~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~ 207 (257)
|+.+++++. +|++++||||+++| ++++.. .|.+++.++|+++.+..+| +++..+.+|++...++
T Consensus 160 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~---d~i~~l~~g~i~~~g~ 236 (262)
T PRK09984 160 RVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYC---ERIVALRQGHVFYDGS 236 (262)
T ss_pred HHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC---CEEEEEECCEEEEeCC
Confidence 999998876 79999999999998 455543 3789999999977666666 7776666666554454
Q ss_pred cc
Q 025114 208 AN 209 (257)
Q Consensus 208 ~~ 209 (257)
++
T Consensus 237 ~~ 238 (262)
T PRK09984 237 SQ 238 (262)
T ss_pred HH
Confidence 43
No 61
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=5.7e-30 Score=230.65 Aligned_cols=181 Identities=19% Similarity=0.239 Sum_probs=137.3
Q ss_pred cceEEecceeeee----CccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh--------CCceecchhhh-
Q 025114 26 ASVLESGNVHAPI----DEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL--------GYSFFDCDTLI- 92 (257)
Q Consensus 26 ~~~l~~~~l~~~~----~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l--------g~~~~d~~~~~- 92 (257)
|++|+++||++.| +...+|+||||+|.+ |++++|+|+||||||||+++|+|++ |.+++++.++.
T Consensus 1 ~~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~---Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~ 77 (330)
T PRK15093 1 MPLLDIRNLTIEFKTSDGWVKAVDRVSMTLTE---GEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLR 77 (330)
T ss_pred CCeEEEeeeEEEEeCCCCCEEEEeeeEEEECC---CCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCc
Confidence 4589999999999 446799999999999 9999999999999999999999997 33455553321
Q ss_pred -----------------hhc-----CCCCCHHHHHHHh-------Cc-----hHHHHHHHHHHHHhccc------Ccccc
Q 025114 93 -----------------EQS-----VDGTSVAEIFKLY-------GE-----GFFREKETEVLQKLSLM------RQLVV 132 (257)
Q Consensus 93 -----------------~~~-----~~~~~v~e~~~~~-------g~-----~~~~~~~~~~l~~l~~~------~~~v~ 132 (257)
.+. ...+++.+.+... +. ...++...++|+.+++. ++.+.
T Consensus 78 ~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~ 157 (330)
T PRK15093 78 LSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPY 157 (330)
T ss_pred CCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCch
Confidence 000 0123455544321 10 11223456788999885 26789
Q ss_pred ccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHH
Q 025114 133 STGGGAVTRPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWE 199 (257)
Q Consensus 133 ~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~ 199 (257)
+|||||+||+.+|+++. +|.++++|||+++| ++++.+. |.++++++||++.+..+| |++..|++
T Consensus 158 ~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~---dri~vm~~ 234 (330)
T PRK15093 158 ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWA---DKINVLYC 234 (330)
T ss_pred hCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhC---CEEEEEEC
Confidence 99999999999998876 79999999999988 4555543 889999999988887887 88888888
Q ss_pred HHHHHHhccccee
Q 025114 200 ERGEAYANANARV 212 (257)
Q Consensus 200 ~r~~~y~~~~~~~ 212 (257)
|++..+|++++++
T Consensus 235 G~ive~g~~~~i~ 247 (330)
T PRK15093 235 GQTVETAPSKELV 247 (330)
T ss_pred CEEEEECCHHHHH
Confidence 8887666655444
No 62
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.95 E-value=1.3e-29 Score=234.68 Aligned_cols=174 Identities=27% Similarity=0.294 Sum_probs=146.9
Q ss_pred CcceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhhh------
Q 025114 25 SASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIEQ------ 94 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~~------ 94 (257)
.+++|+++|++|+|++.++|++|||++.+ ||+++|+|.||||||||+|+|+|.+ |.+++++......
T Consensus 5 ~~~ll~~~~i~K~FggV~AL~~v~l~v~~---GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~ 81 (500)
T COG1129 5 TPPLLELRGISKSFGGVKALDGVSLTVRP---GEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDAL 81 (500)
T ss_pred ccceeeeecceEEcCCceeeccceeEEeC---ceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHH
Confidence 45689999999999999999999999999 9999999999999999999999998 5567777654211
Q ss_pred ------------cCCCCCHHHHHHHhCc----------hHHHHHHHHHHHHhcc---cCccccccChhHhHHHHHHHHhh
Q 025114 95 ------------SVDGTSVAEIFKLYGE----------GFFREKETEVLQKLSL---MRQLVVSTGGGAVTRPINWRYMQ 149 (257)
Q Consensus 95 ------------~~~~~~v~e~~~~~g~----------~~~~~~~~~~l~~l~~---~~~~v~~lsgG~~qr~~~a~~l~ 149 (257)
..+.+|+.+++-...+ ...+++..++|++++. .+.++..||.|++|-+++|+++.
T Consensus 82 ~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~ 161 (500)
T COG1129 82 AAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALS 161 (500)
T ss_pred hCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHh
Confidence 2357788887644322 2345566788998887 34889999999999999999887
Q ss_pred -CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHH
Q 025114 150 -KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEA 204 (257)
Q Consensus 150 -~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~ 204 (257)
++++++|||||+.| +++++.+|.+++.++|.++++...| |++..|.+|+.+.
T Consensus 162 ~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~---DritVlRDG~~v~ 225 (500)
T COG1129 162 FDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIA---DRITVLRDGRVVG 225 (500)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhc---CEEEEEeCCEEee
Confidence 79999999999998 7899989999999999999999998 9998888887543
No 63
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.95 E-value=2e-29 Score=203.78 Aligned_cols=178 Identities=19% Similarity=0.196 Sum_probs=137.6
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhhhcCCCCCHHH
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIEQSVDGTSVAE 103 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~~~~~~~~v~e 103 (257)
||.+++|.+.|+..+- .++++|+. ||+++|+||||||||||+++|||+. |.+++.+.+.........++.-
T Consensus 1 ~l~L~~V~~~y~~~~~--~fdl~v~~---ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSm 75 (231)
T COG3840 1 MLALDDVRFSYGHLPM--RFDLTVPA---GEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSM 75 (231)
T ss_pred CccccceEEeeCcceE--EEEEeecC---CcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhh
Confidence 4678999999997653 68899999 9999999999999999999999998 5677777665332222333333
Q ss_pred HHHH---------------hCc------hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEEC
Q 025114 104 IFKL---------------YGE------GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDV 158 (257)
Q Consensus 104 ~~~~---------------~g~------~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDe 158 (257)
+|+. .-. ..-+++...++.++|+.. +.+.+|||||+||+++|+.+. +-.+++|||
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDE 155 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDE 155 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecC
Confidence 3332 111 223566678889999865 899999999999999998886 566889999
Q ss_pred CHHHHH-----------HHHH-hcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceec
Q 025114 159 PLEALA-----------QRIA-AVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVS 213 (257)
Q Consensus 159 p~~~L~-----------~rl~-~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~ 213 (257)
|++.|. ..+. +++.|+.+++|+++++.+.+ +++..+.+||+.+.|.+++.++
T Consensus 156 PFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia---~~~~fl~~Gri~~~g~~~~~~~ 219 (231)
T COG3840 156 PFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIA---DRVVFLDNGRIAAQGSTQELLS 219 (231)
T ss_pred chhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhh---hceEEEeCCEEEeeccHHHHhc
Confidence 999983 3333 24889999999988888776 8888888899888888776664
No 64
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.95 E-value=4.3e-29 Score=212.07 Aligned_cols=162 Identities=27% Similarity=0.327 Sum_probs=121.5
Q ss_pred EEecceeeeeCc----cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-------
Q 025114 29 LESGNVHAPIDE----AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------- 93 (257)
Q Consensus 29 l~~~~l~~~~~~----~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------- 93 (257)
|+++||++.|++ +.+|+++||+|++ |++++|+||||||||||+|+|+|++ |.+.+++.++..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~---G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 77 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEK---GEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELA 77 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcC---CCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHH
Confidence 478999999986 7899999999999 9999999999999999999999997 445555533210
Q ss_pred ----h----------cCCCCCHHHHHHHh----Cc--hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-
Q 025114 94 ----Q----------SVDGTSVAEIFKLY----GE--GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ- 149 (257)
Q Consensus 94 ----~----------~~~~~~v~e~~~~~----g~--~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~- 149 (257)
. .+.+.++.+.+... +. ....+...++++.+++.+ +.+..|||||+||+.+++++.
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 157 (218)
T cd03255 78 AFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALAN 157 (218)
T ss_pred HHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHcc
Confidence 0 12345777776542 11 112234557888888754 788999999999999998876
Q ss_pred CCcEEEEECCHHHH-----------HHHHHh-cCCCCccccCCCCCCchhhHHHHHHHHH
Q 025114 150 KGISVWLDVPLEAL-----------AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTL 197 (257)
Q Consensus 150 ~~~vl~LDep~~~L-----------~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l 197 (257)
+|++++||||+++| ++++.. .+.+++.++|+++.+. +| |++..|
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~---d~v~~l 213 (218)
T cd03255 158 DPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YA---DRIIEL 213 (218)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hh---cEEEEe
Confidence 79999999999998 455544 4788999999965543 44 554333
No 65
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.3e-29 Score=220.16 Aligned_cols=178 Identities=17% Similarity=0.158 Sum_probs=133.1
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh----------
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI---------- 92 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~---------- 92 (257)
.+|+++|+++.|+++++|+++||++.+ |++++|+||||||||||+++|+|++ |.+++++..+.
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (255)
T PRK11300 4 PLLSVSGLMMRFGGLLAVNNVNLEVRE---QEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARM 80 (255)
T ss_pred ceEEEeeEEEEECCEEEEEeeeeEEcC---CeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhc
Confidence 479999999999988999999999999 9999999999999999999999987 44455543220
Q ss_pred -----hh---cCCCCCHHHHHHHhCc-------------------h--HHHHHHHHHHHHhcccC---ccccccChhHhH
Q 025114 93 -----EQ---SVDGTSVAEIFKLYGE-------------------G--FFREKETEVLQKLSLMR---QLVVSTGGGAVT 140 (257)
Q Consensus 93 -----~~---~~~~~~v~e~~~~~g~-------------------~--~~~~~~~~~l~~l~~~~---~~v~~lsgG~~q 140 (257)
.+ .+.+.++.+++..... . .......++++.+++.+ +.+..||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~q 160 (255)
T PRK11300 81 GVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQR 160 (255)
T ss_pred CeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHH
Confidence 00 1124577776553110 0 01123345677877753 789999999999
Q ss_pred HHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhc
Q 025114 141 RPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN 207 (257)
Q Consensus 141 r~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~ 207 (257)
|+.+++++. +|.+++||||+++| +.++++. |.+++.++|+++.+..+| |++..+.+|++...++
T Consensus 161 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~---d~i~~l~~g~i~~~~~ 237 (255)
T PRK11300 161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGIS---DRIYVVNQGTPLANGT 237 (255)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhC---CEEEEEECCeEEecCC
Confidence 999998876 79999999999998 4555444 789999999977766666 7776666676655554
Q ss_pred ccc
Q 025114 208 ANA 210 (257)
Q Consensus 208 ~~~ 210 (257)
++.
T Consensus 238 ~~~ 240 (255)
T PRK11300 238 PEE 240 (255)
T ss_pred HHH
Confidence 443
No 66
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.95 E-value=1.3e-29 Score=222.50 Aligned_cols=189 Identities=24% Similarity=0.239 Sum_probs=141.2
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC------------Cceecchhhh---
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG------------YSFFDCDTLI--- 92 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg------------~~~~d~~~~~--- 92 (257)
||+++|+++.|+++.+|+++||+|.+ |++++|+||||||||||+|+|+|++. .+.+++..+.
T Consensus 1 ml~~~nl~~~~~~~~il~~vsl~i~~---Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~ 77 (272)
T PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEP---GRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAID 77 (272)
T ss_pred CeEEEEEEEEECCEeEEecceEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCC
Confidence 48999999999998999999999999 99999999999999999999999863 2344443221
Q ss_pred -----------hh---cCCCCCHHHHHHHhCc----------hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHH
Q 025114 93 -----------EQ---SVDGTSVAEIFKLYGE----------GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINW 145 (257)
Q Consensus 93 -----------~~---~~~~~~v~e~~~~~g~----------~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a 145 (257)
.+ .+...++.+++..... ....+...++++.+++.+ +.+..||||++||+.++
T Consensus 78 ~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 157 (272)
T PRK13547 78 APRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFA 157 (272)
T ss_pred HHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHH
Confidence 01 1124677777654211 011233456788888753 78899999999999999
Q ss_pred HHhh----------CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHH
Q 025114 146 RYMQ----------KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGE 203 (257)
Q Consensus 146 ~~l~----------~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~ 203 (257)
+++. +|.+++||||+++| ++++.+. |.+++.++|+++.+..+| |++..|.+|++.
T Consensus 158 ral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~---d~i~~l~~G~i~ 234 (272)
T PRK13547 158 RVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHA---DRIAMLADGAIV 234 (272)
T ss_pred HHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhC---CEEEEEECCeEE
Confidence 8876 79999999999998 3555444 788999999987766666 777777777776
Q ss_pred HHhcccceecchhhhhhcc
Q 025114 204 AYANANARVSLENIAVKLG 222 (257)
Q Consensus 204 ~y~~~~~~~~~~~l~~~~~ 222 (257)
..++++.+.+.+.+...|+
T Consensus 235 ~~g~~~~~~~~~~~~~~~~ 253 (272)
T PRK13547 235 AHGAPADVLTPAHIARCYG 253 (272)
T ss_pred EecCHHHHcCHHHHHHHhC
Confidence 6666665555555555554
No 67
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.3e-29 Score=222.87 Aligned_cols=177 Identities=19% Similarity=0.174 Sum_probs=137.5
Q ss_pred ceEEecceeeeeC-ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh---------
Q 025114 27 SVLESGNVHAPID-EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI--------- 92 (257)
Q Consensus 27 ~~l~~~~l~~~~~-~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~--------- 92 (257)
++|+++|+++.|+ ++.+|+|+||+|.+ |++++|+|+||||||||+++|+|++ |.+++++.++.
T Consensus 3 ~~l~~~~l~~~~~~~~~~l~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 79 (274)
T PRK13647 3 NIIEVEDLHFRYKDGTKALKGLSLSIPE---GSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRS 79 (274)
T ss_pred ceEEEEEEEEEeCCCCeeeeeEEEEEcC---CCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHh
Confidence 4799999999996 56799999999999 9999999999999999999999987 44555553321
Q ss_pred -----hh----cCCCCCHHHHHHHhC----c--hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcE
Q 025114 93 -----EQ----SVDGTSVAEIFKLYG----E--GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGIS 153 (257)
Q Consensus 93 -----~~----~~~~~~v~e~~~~~g----~--~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~v 153 (257)
.+ .+...++.+.+.... . ...+++..++++.+++.+ +.+..||||++||+.+++++. +|++
T Consensus 80 ~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~l 159 (274)
T PRK13647 80 KVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDV 159 (274)
T ss_pred hEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 00 112446777664321 1 112234467788888754 789999999999999998886 7999
Q ss_pred EEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccc
Q 025114 154 VWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN 209 (257)
Q Consensus 154 l~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~ 209 (257)
++||||+++| +++++..|.+++.++|+++.+..+| |++..|.+|++...++++
T Consensus 160 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~---d~i~~l~~G~i~~~g~~~ 223 (274)
T PRK13647 160 IVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWA---DQVIVLKEGRVLAEGDKS 223 (274)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC---CEEEEEECCEEEEECCHH
Confidence 9999999998 4555545889999999988777777 888888888887777664
No 68
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.3e-29 Score=227.97 Aligned_cols=183 Identities=19% Similarity=0.236 Sum_probs=141.0
Q ss_pred CcceEEecceeeeeC----------ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchh
Q 025114 25 SASVLESGNVHAPID----------EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDT 90 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~----------~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~ 90 (257)
++++|+++||++.|+ ...+|+||||+|.+ |++++|+|+||||||||+++|+|++ |.+++++.+
T Consensus 2 ~~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~---Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~ 78 (327)
T PRK11308 2 QQPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLER---GKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQD 78 (327)
T ss_pred CCceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECC---CCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEE
Confidence 457899999999996 25799999999999 9999999999999999999999987 455666544
Q ss_pred hhh-----------------h-----cCCCCCHHHHHHH----h-C--chHHHHHHHHHHHHhccc----CccccccChh
Q 025114 91 LIE-----------------Q-----SVDGTSVAEIFKL----Y-G--EGFFREKETEVLQKLSLM----RQLVVSTGGG 137 (257)
Q Consensus 91 ~~~-----------------~-----~~~~~~v~e~~~~----~-g--~~~~~~~~~~~l~~l~~~----~~~v~~lsgG 137 (257)
+.. + ....+++.+.+.. . + ....+++..++++.+++. ++.+.+||||
T Consensus 79 l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgG 158 (327)
T PRK11308 79 LLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGG 158 (327)
T ss_pred cCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHH
Confidence 310 0 0112455555432 1 1 112234556788888874 3789999999
Q ss_pred HhHHHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHh-cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHH
Q 025114 138 AVTRPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEA 204 (257)
Q Consensus 138 ~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~ 204 (257)
|+||+.+|+++. +|+++++||||++| +.++.. .|.++++++||++.+..+| |++..|++|++..
T Consensus 159 q~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~a---drv~vm~~G~ive 235 (327)
T PRK11308 159 QRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIA---DEVMVMYLGRCVE 235 (327)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhC---CEEEEEECCEEEE
Confidence 999999998886 79999999999998 345544 3889999999988877777 8888999998887
Q ss_pred Hhcccceec
Q 025114 205 YANANARVS 213 (257)
Q Consensus 205 y~~~~~~~~ 213 (257)
+|++++++.
T Consensus 236 ~g~~~~~~~ 244 (327)
T PRK11308 236 KGTKEQIFN 244 (327)
T ss_pred ECCHHHHhc
Confidence 777665553
No 69
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.95 E-value=1.8e-29 Score=220.00 Aligned_cols=173 Identities=23% Similarity=0.236 Sum_probs=132.3
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh---------
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI--------- 92 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~--------- 92 (257)
.++|+++||++.|+++.+|+++||+|.+ |++++|+||||||||||+|+|+|++ |.+++++..+.
T Consensus 10 ~~~l~i~~l~~~~~~~~il~~isl~i~~---Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v 86 (257)
T PRK11247 10 GTPLLLNAVSKRYGERTVLNQLDLHIPA---GQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLM 86 (257)
T ss_pred CCcEEEEEEEEEECCcceeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEE
Confidence 4679999999999988999999999999 9999999999999999999999987 44455543321
Q ss_pred hh---cCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH--
Q 025114 93 EQ---SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL-- 163 (257)
Q Consensus 93 ~~---~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L-- 163 (257)
.+ .+...++.+.+.............++++.+++.+ +.+..|||||+||+.+++++. +|++++||||+++|
T Consensus 87 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~ 166 (257)
T PRK11247 87 FQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDA 166 (257)
T ss_pred ecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 11 1223678887654221122344567888888854 788999999999999998876 79999999999998
Q ss_pred ---------HHHHHh-cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHH
Q 025114 164 ---------AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEA 204 (257)
Q Consensus 164 ---------~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~ 204 (257)
+.++.. .+.+++.++|+++.+..+| |++..+.+|++..
T Consensus 167 ~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~---d~i~~l~~G~i~~ 214 (257)
T PRK11247 167 LTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMA---DRVLLIEEGKIGL 214 (257)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhC---CEEEEEECCEEEe
Confidence 344433 3788999999977666666 7776666665543
No 70
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.7e-29 Score=220.93 Aligned_cols=192 Identities=22% Similarity=0.240 Sum_probs=142.2
Q ss_pred CcceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-------
Q 025114 25 SASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------- 93 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------- 93 (257)
+..+|+++||++.|+++.+|+++||+|.+ |++++|+||||||||||+++|+|++ |.+.+++.++..
T Consensus 4 ~~~~l~i~~l~~~~~~~~~l~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~ 80 (265)
T PRK10253 4 SVARLRGEQLTLGYGKYTVAENLTVEIPD---GHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVA 80 (265)
T ss_pred cccEEEEEEEEEEECCEEEeeecceEECC---CCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHh
Confidence 34679999999999988999999999999 9999999999999999999999987 445555543210
Q ss_pred -------h---cCCCCCHHHHHHHhC--c--------hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-
Q 025114 94 -------Q---SVDGTSVAEIFKLYG--E--------GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ- 149 (257)
Q Consensus 94 -------~---~~~~~~v~e~~~~~g--~--------~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~- 149 (257)
+ .+.+.++.+++.... . ........++++.+++.+ +.+..||||++||+.+++++.
T Consensus 81 ~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~ 160 (265)
T PRK10253 81 RRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQ 160 (265)
T ss_pred hheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhc
Confidence 0 112457777665421 0 111234456788888753 789999999999999998876
Q ss_pred CCcEEEEECCHHHH-----------HHHHHh-cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecchhh
Q 025114 150 KGISVWLDVPLEAL-----------AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENI 217 (257)
Q Consensus 150 ~~~vl~LDep~~~L-----------~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~~l 217 (257)
+|++++||||+++| +.++.+ .|.+++.++|+++.+..+| |++..+.+|++...++++++...+.+
T Consensus 161 ~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~---d~i~~l~~G~i~~~g~~~~~~~~~~~ 237 (265)
T PRK10253 161 ETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYA---SHLIALREGKIVAQGAPKEIVTAELI 237 (265)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC---CEEEEEECCEEEEeCCHHHHhhHHHH
Confidence 79999999999998 344444 3788999999987777777 77777777776655555554443444
Q ss_pred hhhcc
Q 025114 218 AVKLG 222 (257)
Q Consensus 218 ~~~~~ 222 (257)
...|+
T Consensus 238 ~~~~~ 242 (265)
T PRK10253 238 ERIYG 242 (265)
T ss_pred HHHhC
Confidence 44444
No 71
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.5e-29 Score=240.28 Aligned_cols=191 Identities=17% Similarity=0.185 Sum_probs=146.2
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh---------
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI--------- 92 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~--------- 92 (257)
.++|+++|+++.|+++++|+|+||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 3 ~~~l~~~~l~~~~~~~~il~~vs~~i~~---Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 79 (510)
T PRK09700 3 TPYISMAGIGKSFGPVHALKSVNLTVYP---GEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQ 79 (510)
T ss_pred CceEEEeeeEEEcCCeEEeeeeeEEEcC---CcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHH
Confidence 3579999999999988999999999999 9999999999999999999999987 44555553221
Q ss_pred ------hh---cCCCCCHHHHHHHh--------Cc-----hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHH
Q 025114 93 ------EQ---SVDGTSVAEIFKLY--------GE-----GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRY 147 (257)
Q Consensus 93 ------~~---~~~~~~v~e~~~~~--------g~-----~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~ 147 (257)
.+ .+...++.+.+... +. ....++..++++.+++.+ +++.+|||||+||+.++++
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~a 159 (510)
T PRK09700 80 LGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKT 159 (510)
T ss_pred CCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHH
Confidence 00 11245777766431 10 112234567788888854 7899999999999999988
Q ss_pred hh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecch
Q 025114 148 MQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLE 215 (257)
Q Consensus 148 l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~ 215 (257)
+. +|++++||||+++| +++++..|.++++++||++.+..+| |++..|.+|++...++++++...+
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~---d~v~~l~~G~i~~~g~~~~~~~~~ 236 (510)
T PRK09700 160 LMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRIC---DRYTVMKDGSSVCSGMVSDVSNDD 236 (510)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC---CEEEEEECCEEeeecchhhCCHHH
Confidence 76 79999999999998 4566556889999999988777777 888888888877777776665555
Q ss_pred hhhhhcc
Q 025114 216 NIAVKLG 222 (257)
Q Consensus 216 ~l~~~~~ 222 (257)
.+...++
T Consensus 237 ~~~~~~~ 243 (510)
T PRK09700 237 IVRLMVG 243 (510)
T ss_pred HHHHhcC
Confidence 4444443
No 72
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.95 E-value=1.5e-29 Score=214.13 Aligned_cols=165 Identities=21% Similarity=0.285 Sum_probs=122.3
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-----------
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE----------- 93 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~----------- 93 (257)
|+++|+++.|+++.+|+|+||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++..
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIAD---GEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMV 77 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEE
Confidence 4789999999988999999999999 9999999999999999999999987 445555533210
Q ss_pred -h---cCCCCCHHHHHHHh----C--chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECC
Q 025114 94 -Q---SVDGTSVAEIFKLY----G--EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVP 159 (257)
Q Consensus 94 -~---~~~~~~v~e~~~~~----g--~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep 159 (257)
+ .+...++.+.+... + ....++...++++.+++.+ +.+..|||||+||+.+++++. +|++++||||
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP 157 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEP 157 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 0 11245777766432 1 1112233456788888753 788999999999999998876 7999999999
Q ss_pred HHHH-----------HHHHHh-cCCCCccccCCCCCCchhhHHHHHHHHHHH
Q 025114 160 LEAL-----------AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTLWE 199 (257)
Q Consensus 160 ~~~L-----------~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~ 199 (257)
+++| ++++.. .+.++++++|+++.+..+| +++..+.+
T Consensus 158 t~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~---d~i~~l~~ 206 (213)
T cd03301 158 LSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMA---DRIAVMND 206 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhc---CeEEEEEC
Confidence 9998 345544 3789999999965554444 45433333
No 73
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.6e-29 Score=222.64 Aligned_cols=183 Identities=16% Similarity=0.187 Sum_probs=140.8
Q ss_pred cceEEecceeeeeC-ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh--------
Q 025114 26 ASVLESGNVHAPID-EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI-------- 92 (257)
Q Consensus 26 ~~~l~~~~l~~~~~-~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~-------- 92 (257)
|.+|+++|+++.|+ ++.+|+++||+|.+ |++++|+|+||||||||+|+|+|++ |.+++++..+.
T Consensus 1 ~~~l~~~~l~~~~~~~~~~l~~vsl~i~~---Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 77 (277)
T PRK13652 1 MHLIETRDLCYSYSGSKEALNNINFIAPR---NSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVR 77 (277)
T ss_pred CceEEEEEEEEEeCCCCceeeEeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 45799999999995 56799999999999 9999999999999999999999987 44555553221
Q ss_pred -------hh---cCCCCCHHHHHHHhC------chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCc
Q 025114 93 -------EQ---SVDGTSVAEIFKLYG------EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGI 152 (257)
Q Consensus 93 -------~~---~~~~~~v~e~~~~~g------~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~ 152 (257)
.. .+...++.+.+.... ....++...++++.+++.+ +.+..||||++||+.+++++. +|+
T Consensus 78 ~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~ 157 (277)
T PRK13652 78 KFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQ 157 (277)
T ss_pred hheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 00 112457777664311 1112234567788888753 789999999999999998876 799
Q ss_pred EEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecc
Q 025114 153 SVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSL 214 (257)
Q Consensus 153 vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~ 214 (257)
+++||||+++| ++++.+. |.+++.++|+++.+..+| |++..|.+|++...|++++.+..
T Consensus 158 llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~---drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 158 VLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMA---DYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC---CEEEEEECCeEEEECCHHHHhcC
Confidence 99999999988 4555444 789999999988777777 88888888888877777666543
No 74
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=9.1e-30 Score=230.39 Aligned_cols=178 Identities=19% Similarity=0.227 Sum_probs=135.4
Q ss_pred eEEecceeeeeC----ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh-------
Q 025114 28 VLESGNVHAPID----EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI------- 92 (257)
Q Consensus 28 ~l~~~~l~~~~~----~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~------- 92 (257)
||+++||++.|+ ++++|+|+||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~---Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~ 77 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPA---GEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKEL 77 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcC---CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHH
Confidence 589999999997 46799999999999 9999999999999999999999997 44555553321
Q ss_pred ---hh----------cCCCCCHHHHHHHh----C--chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-
Q 025114 93 ---EQ----------SVDGTSVAEIFKLY----G--EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ- 149 (257)
Q Consensus 93 ---~~----------~~~~~~v~e~~~~~----g--~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~- 149 (257)
.. .+...++.+.+... + ....+++..++++.+++.+ +.+.+|||||+||+.+++++.
T Consensus 78 ~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~ 157 (343)
T PRK11153 78 RKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALAS 157 (343)
T ss_pred HHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHc
Confidence 00 11246787776542 1 1122344567888888854 788999999999999998876
Q ss_pred CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccce
Q 025114 150 KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANAR 211 (257)
Q Consensus 150 ~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~ 211 (257)
+|++++||||+++| ++++.+. |.+++.++|+++.+..+| |++..|.+|++...++++.+
T Consensus 158 ~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~---d~v~~l~~G~i~~~g~~~~~ 228 (343)
T PRK11153 158 NPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRIC---DRVAVIDAGRLVEQGTVSEV 228 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC---CEEEEEECCEEEEEcCHHHH
Confidence 79999999999998 4555443 789999999988777777 77777777766554544433
No 75
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2e-29 Score=213.03 Aligned_cols=165 Identities=24% Similarity=0.262 Sum_probs=123.8
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh----------h
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE----------Q 94 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~----------~ 94 (257)
|+++|+++.|+++.+|+++||++.+ |++++|+||||||||||+++|+|++ |.+++++.++.. +
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~---G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q 77 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEK---GEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPE 77 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEecc
Confidence 4789999999988899999999999 9999999999999999999999987 445666543311 1
Q ss_pred ---cCCCCCHHHHHHHhCc------hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECCHH
Q 025114 95 ---SVDGTSVAEIFKLYGE------GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLE 161 (257)
Q Consensus 95 ---~~~~~~v~e~~~~~g~------~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~ 161 (257)
.+.+.++.+.+..... ....+...++++.+++.+ +.+..|||||+||+.+++++. +|++++||||++
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~ 157 (210)
T cd03269 78 ERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFS 157 (210)
T ss_pred CCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 1234678777654211 112334557788888754 778999999999999998876 799999999999
Q ss_pred HH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHH
Q 025114 162 AL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWE 199 (257)
Q Consensus 162 ~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~ 199 (257)
+| ++++...+.+++.++|+.+.+..+| |++..+.+
T Consensus 158 ~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~---d~i~~l~~ 203 (210)
T cd03269 158 GLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELC---DRVLLLNK 203 (210)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhh---hEEEEEeC
Confidence 88 3444445778999999965544444 55444433
No 76
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.95 E-value=1.2e-29 Score=218.61 Aligned_cols=176 Identities=22% Similarity=0.237 Sum_probs=133.2
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh---------h
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE---------Q 94 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~---------~ 94 (257)
+|+++|+++.|+++.+|+|+||++.+ |++++|+|+||||||||+++|+|++ |.+++++.++.. .
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQ---GEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQ 77 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhh
Confidence 47899999999988899999999999 9999999999999999999999987 445555533210 0
Q ss_pred ----------cCCCCCHHHHHHHhC-------chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcE
Q 025114 95 ----------SVDGTSVAEIFKLYG-------EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGIS 153 (257)
Q Consensus 95 ----------~~~~~~v~e~~~~~g-------~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~v 153 (257)
.+...++.+.+.... .....+...++++.+++.+ +.+..||||++||+.+++++. +|++
T Consensus 78 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 157 (240)
T PRK09493 78 EAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKL 157 (240)
T ss_pred ceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 112467777664321 1112234467888888753 788999999999999998876 7999
Q ss_pred EEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccc
Q 025114 154 VWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN 209 (257)
Q Consensus 154 l~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~ 209 (257)
++||||+++| ++++.+.+.+++.++|+++.+..+| |++..+.+|++...++++
T Consensus 158 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~---d~i~~l~~G~i~~~g~~~ 221 (240)
T PRK09493 158 MLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVA---SRLIFIDKGRIAEDGDPQ 221 (240)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhC---CEEEEEECCEEEeeCCHH
Confidence 9999999998 3445445788999999977766666 777677677655444443
No 77
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.2e-29 Score=224.59 Aligned_cols=181 Identities=18% Similarity=0.160 Sum_probs=138.8
Q ss_pred eEEecceeeeeCc-----cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh------
Q 025114 28 VLESGNVHAPIDE-----AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI------ 92 (257)
Q Consensus 28 ~l~~~~l~~~~~~-----~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~------ 92 (257)
||+++||++.|+. +.+|+|+||+|.+ |++++|+|+||||||||+|+|+|++ |.+++++.++.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~---Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 77 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKK---GSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQK 77 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcC---CCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccc
Confidence 5899999999974 2599999999999 9999999999999999999999997 45566654321
Q ss_pred ------------hh----cCCCCCHHHHHHHhC------chHHHHHHHHHHHHhccc----CccccccChhHhHHHHHHH
Q 025114 93 ------------EQ----SVDGTSVAEIFKLYG------EGFFREKETEVLQKLSLM----RQLVVSTGGGAVTRPINWR 146 (257)
Q Consensus 93 ------------~~----~~~~~~v~e~~~~~g------~~~~~~~~~~~l~~l~~~----~~~v~~lsgG~~qr~~~a~ 146 (257)
.+ .+...++.+.+.... ....+.+..++++.+++. ++.+..|||||+||+.+++
T Consensus 78 ~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~ 157 (288)
T PRK13643 78 EIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAG 157 (288)
T ss_pred cHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHH
Confidence 00 112346666654321 111233456778888873 3788999999999999998
Q ss_pred Hhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecc
Q 025114 147 YMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSL 214 (257)
Q Consensus 147 ~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~ 214 (257)
++. +|++++||||+++| ++++++.|.++++++||++.+..+| |++..|.+|++...|++++++..
T Consensus 158 aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~---dri~~l~~G~i~~~g~~~~~~~~ 234 (288)
T PRK13643 158 ILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYA---DYVYLLEKGHIISCGTPSDVFQE 234 (288)
T ss_pred HHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhC---CEEEEEECCEEEEECCHHHHHcC
Confidence 876 79999999999998 3555555889999999988777777 88888888888777777665543
No 78
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.4e-29 Score=218.37 Aligned_cols=178 Identities=18% Similarity=0.213 Sum_probs=130.7
Q ss_pred CcceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---------CCceecchhhhh--
Q 025114 25 SASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---------GYSFFDCDTLIE-- 93 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---------g~~~~d~~~~~~-- 93 (257)
+.++|+++||++.|+++.+|+++||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++..
T Consensus 3 ~~~~l~~~~l~~~~~~~~il~~is~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 79 (253)
T PRK14242 3 SPPKMEARGLSFFYGDFQALHDISLEFEQ---NQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH 79 (253)
T ss_pred CCcEEEEeeeEEEECCeeeecceeEEEeC---CCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence 45789999999999988899999999999 9999999999999999999999974 334555533210
Q ss_pred --------------h--cCCCCCHHHHHHHh----Cc---hHHHHHHHHHHHHhccc-------CccccccChhHhHHHH
Q 025114 94 --------------Q--SVDGTSVAEIFKLY----GE---GFFREKETEVLQKLSLM-------RQLVVSTGGGAVTRPI 143 (257)
Q Consensus 94 --------------~--~~~~~~v~e~~~~~----g~---~~~~~~~~~~l~~l~~~-------~~~v~~lsgG~~qr~~ 143 (257)
+ .....++.+.+... +. ....+...++++.+++. ++.+..|||||+||+.
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~ 159 (253)
T PRK14242 80 VDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLC 159 (253)
T ss_pred cCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHH
Confidence 0 01124677766432 11 11223445667777762 3678999999999999
Q ss_pred HHHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccc
Q 025114 144 NWRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN 209 (257)
Q Consensus 144 ~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~ 209 (257)
+++++. +|++++||||+++| ++++. .+.+++.++|+++.+..+| |++..|.+|++...++++
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~~~~~~~---d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14242 160 IARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQQAARVS---DVTAFFYMGKLIEVGPTE 233 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHHHHHHhC---CEEEEEECCEEEEeCCHH
Confidence 998876 79999999999998 34443 3678899999977666666 777666666654444443
No 79
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.95 E-value=1.8e-29 Score=221.28 Aligned_cols=178 Identities=16% Similarity=0.204 Sum_probs=132.8
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh---------
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI--------- 92 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~--------- 92 (257)
+++|+++||++.|+++.+|+++||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (269)
T PRK11831 5 ANLVDMRGVSFTRGNRCIFDNISLTVPR---GKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYT 81 (269)
T ss_pred cceEEEeCeEEEECCEEEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHH
Confidence 4689999999999988999999999999 9999999999999999999999997 44555543221
Q ss_pred -hh----------cCCCCCHHHHHHHh----C---chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-C
Q 025114 93 -EQ----------SVDGTSVAEIFKLY----G---EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-K 150 (257)
Q Consensus 93 -~~----------~~~~~~v~e~~~~~----g---~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~ 150 (257)
.. .+.+.++.+++... . .........++++.+++.+ +.+..|||||+||+.+++++. +
T Consensus 82 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~ 161 (269)
T PRK11831 82 VRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALE 161 (269)
T ss_pred HhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 00 11345777766431 1 1111233456788888754 778999999999999998876 7
Q ss_pred CcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccc
Q 025114 151 GISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN 209 (257)
Q Consensus 151 ~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~ 209 (257)
|.+++||||+++| ++++.+. |.+++.++|+++.+..+| |++..|.+|++...++++
T Consensus 162 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~---d~v~~l~~G~i~~~g~~~ 229 (269)
T PRK11831 162 PDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIA---DHAYIVADKKIVAHGSAQ 229 (269)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhh---CEEEEEECCEEEEeCCHH
Confidence 9999999999998 3444433 788999999977666666 676666666554444443
No 80
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.95 E-value=1.2e-29 Score=225.86 Aligned_cols=175 Identities=17% Similarity=0.186 Sum_probs=136.5
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh----------
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE---------- 93 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~---------- 93 (257)
+++++|++|.|+++.+|+|+||++++ |++++|+||||||||||+|+|+|++ |.+.+++.++..
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~---Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig 78 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQK---GRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeC---CeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceE
Confidence 58999999999999999999999999 9999999999999999999999987 445555543210
Q ss_pred ------hcCCCCCHHHHHHHhCc------hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEE
Q 025114 94 ------QSVDGTSVAEIFKLYGE------GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLD 157 (257)
Q Consensus 94 ------~~~~~~~v~e~~~~~g~------~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LD 157 (257)
..+.++++.+++..... ...+++..++++.+++.+ +.+..||||++||+.+++++. +|.+++||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLD 158 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILD 158 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 11235688887754221 112344567888888864 789999999999999998776 79999999
Q ss_pred CCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccc
Q 025114 158 VPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN 209 (257)
Q Consensus 158 ep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~ 209 (257)
||+++| +++++. +.+++.++|+++++..+| |++..+.+|++...|+.+
T Consensus 159 EPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~~~~~~~---d~i~~l~~G~i~~~g~~~ 217 (301)
T TIGR03522 159 EPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQEVEAIC---DRVIIINKGKIVADKKLD 217 (301)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHHhC---CEEEEEECCEEEEeCCHH
Confidence 999998 344433 678999999988888888 888777777765555444
No 81
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.8e-29 Score=216.51 Aligned_cols=170 Identities=21% Similarity=0.245 Sum_probs=127.7
Q ss_pred eEEecceeeeeCcc----ccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh-------
Q 025114 28 VLESGNVHAPIDEA----QVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI------- 92 (257)
Q Consensus 28 ~l~~~~l~~~~~~~----~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~------- 92 (257)
||+++|+++.|+++ ++|+++||+|++ |++++|+||||||||||+|+|+|++ |.+.+++.++.
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 77 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPK---GEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKEL 77 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHH
Confidence 48899999999876 899999999999 9999999999999999999999997 44555544321
Q ss_pred ---hh----------cCCCCCHHHHHHHh----Cc--hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-
Q 025114 93 ---EQ----------SVDGTSVAEIFKLY----GE--GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ- 149 (257)
Q Consensus 93 ---~~----------~~~~~~v~e~~~~~----g~--~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~- 149 (257)
.. .+...++.+.+... +. ........++++.+++.+ +.+..|||||+|++.+++++.
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 157 (233)
T cd03258 78 RKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALAN 157 (233)
T ss_pred HHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 00 12246777766431 11 112234567788888754 788999999999999998776
Q ss_pred CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHH
Q 025114 150 KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGE 203 (257)
Q Consensus 150 ~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~ 203 (257)
+|.+++||||+++| +.++.+. |.+++.++|+++.+..+| |++..|.+|++.
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~---d~i~~l~~G~i~ 220 (233)
T cd03258 158 NPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRIC---DRVAVMEKGEVV 220 (233)
T ss_pred CCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhC---CEEEEEECCEEE
Confidence 79999999999998 3444444 789999999976655555 666555555443
No 82
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.95 E-value=2.3e-29 Score=213.78 Aligned_cols=166 Identities=19% Similarity=0.279 Sum_probs=124.5
Q ss_pred eEEecceeeeeCcc----ccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh-------
Q 025114 28 VLESGNVHAPIDEA----QVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI------- 92 (257)
Q Consensus 28 ~l~~~~l~~~~~~~----~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~------- 92 (257)
||+++|+++.|+++ ++|+++||++++ |++++|+|+||||||||+|+|+|++ |.+++++.++.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 77 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKP---GEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEAR 77 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHH
Confidence 47899999999876 799999999999 9999999999999999999999987 44555543221
Q ss_pred ------hh---cCCCCCHHHHHHHhCc------hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcE
Q 025114 93 ------EQ---SVDGTSVAEIFKLYGE------GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGIS 153 (257)
Q Consensus 93 ------~~---~~~~~~v~e~~~~~g~------~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~v 153 (257)
.+ .+.+.++.+++..... ........++++.+++.+ +.+..|||||+||+.+++++. +|++
T Consensus 78 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~i 157 (218)
T cd03266 78 RRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPV 157 (218)
T ss_pred hhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCE
Confidence 00 1234678877654211 112334567888888854 789999999999999998876 7999
Q ss_pred EEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHH
Q 025114 154 VWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWE 199 (257)
Q Consensus 154 l~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~ 199 (257)
++||||+++| +.++.+.|.+++.++|+++.+..+| |++..|.+
T Consensus 158 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~---d~i~~l~~ 211 (218)
T cd03266 158 LLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLC---DRVVVLHR 211 (218)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhc---CEEEEEEC
Confidence 9999999998 3455445789999999965554444 55433333
No 83
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.95 E-value=2.4e-29 Score=216.32 Aligned_cols=172 Identities=23% Similarity=0.233 Sum_probs=128.7
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh-----------
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI----------- 92 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~----------- 92 (257)
+|+++|+++.|+++.+|+++||+|.+ |++++|+||||||||||+++|+|++ |.+.+++.++.
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~ 77 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRP---GEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLG 77 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEE
Confidence 57899999999988999999999999 9999999999999999999999987 44555554321
Q ss_pred --hh---cCCCCCHHHHHHHhCc------hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEE
Q 025114 93 --EQ---SVDGTSVAEIFKLYGE------GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLD 157 (257)
Q Consensus 93 --~~---~~~~~~v~e~~~~~g~------~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LD 157 (257)
.+ .+...++.+.+..... ....+...++++.+++.+ +.+..||||++||+.+++++. +|++++||
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 157 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLD 157 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 00 1134577776543211 112233456788888753 788999999999999998876 79999999
Q ss_pred CCHHHH-----------HHHHHh-cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHh
Q 025114 158 VPLEAL-----------AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYA 206 (257)
Q Consensus 158 ep~~~L-----------~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~ 206 (257)
||+++| ++++++ .|.++++++|+++.+.. | |++..|.+|++...+
T Consensus 158 EP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~---d~i~~l~~G~i~~~~ 214 (236)
T TIGR03864 158 EPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-D---DRLVVLHRGRVLADG 214 (236)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-C---CEEEEEeCCeEEEeC
Confidence 999998 345543 47889999999776643 5 777666666544333
No 84
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=3.6e-29 Score=202.08 Aligned_cols=182 Identities=21% Similarity=0.212 Sum_probs=142.1
Q ss_pred CcceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh--------
Q 025114 25 SASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI-------- 92 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~-------- 92 (257)
.++.|+++|++|+||...+|++|||+-+. |++|.|||.+||||||++|||+-+. |.+.+.+..+.
T Consensus 3 ~~~~l~v~dlHK~~G~~eVLKGvSL~A~~---GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~ 79 (256)
T COG4598 3 AENALEVEDLHKRYGEHEVLKGVSLQANA---GDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQ 79 (256)
T ss_pred cccceehhHHHhhcccchhhcceeeecCC---CCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCC
Confidence 35679999999999999999999999999 9999999999999999999999765 33444433220
Q ss_pred -------------------hhc---CCCCCHHHHHHH-----hCc--hHHHHHHHHHHHHhcccC---ccccccChhHhH
Q 025114 93 -------------------EQS---VDGTSVAEIFKL-----YGE--GFFREKETEVLQKLSLMR---QLVVSTGGGAVT 140 (257)
Q Consensus 93 -------------------~~~---~~~~~v~e~~~~-----~g~--~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~q 140 (257)
.+. +..+|+.+++-. .|. ....++....|.++|+.+ .++..|||||+|
T Consensus 80 l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQ 159 (256)
T COG4598 80 LKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQ 159 (256)
T ss_pred eeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHH
Confidence 011 112334333221 121 223455667889999976 689999999999
Q ss_pred HHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcc
Q 025114 141 RPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANA 208 (257)
Q Consensus 141 r~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~ 208 (257)
|++||++|+ +|.++++||||+.| ++.|+..|.|...++|.+..+...+ .++..|++|.+...|+|
T Consensus 160 R~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vs---s~v~fLh~G~iEE~G~P 236 (256)
T COG4598 160 RVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVS---SHVIFLHQGKIEEEGPP 236 (256)
T ss_pred HHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhh---hheEEeecceecccCCh
Confidence 999999997 89999999999998 5778888999999999988777665 77888888988888888
Q ss_pred ccee
Q 025114 209 NARV 212 (257)
Q Consensus 209 ~~~~ 212 (257)
++++
T Consensus 237 ~qvf 240 (256)
T COG4598 237 EQVF 240 (256)
T ss_pred HHHh
Confidence 7766
No 85
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.95 E-value=2.6e-29 Score=218.70 Aligned_cols=188 Identities=22% Similarity=0.214 Sum_probs=139.5
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh------------
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI------------ 92 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~------------ 92 (257)
|+++|+++.|+++.+|+++||++.+ |++++|+|+||||||||+|+|+|++ |.+++++.++.
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~---Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPP---GSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcC---CcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 6799999999998999999999999 9999999999999999999999987 44555553321
Q ss_pred --hhc---CCCCCHHHHHHHhCc----------hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcE
Q 025114 93 --EQS---VDGTSVAEIFKLYGE----------GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGIS 153 (257)
Q Consensus 93 --~~~---~~~~~v~e~~~~~g~----------~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~v 153 (257)
.+. ....++.+.+..... ....+...++++.+++.+ +.+..||||++||+.+++++. +|++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 158 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKL 158 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 111 124577777654210 011223456788887753 788999999999999998876 7999
Q ss_pred EEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecchhhhhhcc
Q 025114 154 VWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLG 222 (257)
Q Consensus 154 l~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~~l~~~~~ 222 (257)
++||||+++| ++++.+.+.+++.++|+++.+..+| |++..|.+|++...++++++...+.+...|+
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~---d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 235 (256)
T TIGR03873 159 LLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYC---DHVVVLDGGRVVAAGPPREVLTPALIRAVYG 235 (256)
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC---CEEEEEeCCCEEEecCHHHhhCHHHHHHHhC
Confidence 9999999998 4555545788999999988777777 7887777777665555554444334444443
No 86
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.1e-29 Score=217.35 Aligned_cols=178 Identities=17% Similarity=0.199 Sum_probs=132.6
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---------CCceecchhhh----
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---------GYSFFDCDTLI---- 92 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---------g~~~~d~~~~~---- 92 (257)
|++|+++||++.|+++.+|+++||+|++ |++++|+||||||||||+++|+|++ |.+.+++.++.
T Consensus 1 ~~~l~~~~l~~~~~~~~~l~~is~~i~~---Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 77 (250)
T PRK14247 1 MNKIEIRDLKVSFGQVEVLDGVNLEIPD---NTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77 (250)
T ss_pred CceEEEEeeEEEECCeeeeecceeEEcC---CCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCH
Confidence 4679999999999988899999999999 9999999999999999999999986 33445543321
Q ss_pred ----------hh---cCCCCCHHHHHHHhC--------chHHHHHHHHHHHHhccc-------CccccccChhHhHHHHH
Q 025114 93 ----------EQ---SVDGTSVAEIFKLYG--------EGFFREKETEVLQKLSLM-------RQLVVSTGGGAVTRPIN 144 (257)
Q Consensus 93 ----------~~---~~~~~~v~e~~~~~g--------~~~~~~~~~~~l~~l~~~-------~~~v~~lsgG~~qr~~~ 144 (257)
.+ .+...++.+.+.... .....+...++++.+++. ++.+..||||++||+.+
T Consensus 78 ~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~l 157 (250)
T PRK14247 78 IELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCI 157 (250)
T ss_pred HHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHH
Confidence 00 123567777765321 011223345678888763 36789999999999999
Q ss_pred HHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccc
Q 025114 145 WRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANA 210 (257)
Q Consensus 145 a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~ 210 (257)
++++. +|++++||||+++| ++++. .+.+++.++|+++.+..+| |++..|.+|++...+++++
T Consensus 158 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~---d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14247 158 ARALAFQPEVLLADEPTANLDPENTAKIESLFLELK-KDMTIVLVTHFPQQAARIS---DYVAFLYKGQIVEWGPTRE 231 (250)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhc---CEEEEEECCeEEEECCHHH
Confidence 98876 79999999999998 34443 3678899999977666666 7776777776654444443
No 87
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=3.5e-29 Score=237.49 Aligned_cols=191 Identities=23% Similarity=0.251 Sum_probs=145.4
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC------Cceecchhhh-------
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG------YSFFDCDTLI------- 92 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg------~~~~d~~~~~------- 92 (257)
+++|+++|+++.|+++.+|+|+||+|.+ |++++|+||||||||||+|+|+|++. .+++++.++.
T Consensus 3 ~~~l~~~nl~~~~~~~~il~~isl~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~ 79 (506)
T PRK13549 3 EYLLEMKNITKTFGGVKALDNVSLKVRA---GEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDT 79 (506)
T ss_pred CceEEEeeeEEEeCCeEeecceeEEEeC---CeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHH
Confidence 4589999999999988999999999999 99999999999999999999999874 2345543220
Q ss_pred -hh----------cCCCCCHHHHHHHhCc---------hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh
Q 025114 93 -EQ----------SVDGTSVAEIFKLYGE---------GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ 149 (257)
Q Consensus 93 -~~----------~~~~~~v~e~~~~~g~---------~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~ 149 (257)
.. .+...++.+.+..... ....++..++++.+++.+ +.+..|||||+||+.+|+++.
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~ 159 (506)
T PRK13549 80 ERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALN 159 (506)
T ss_pred HHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHh
Confidence 00 1234677777654211 112234567888888853 789999999999999998876
Q ss_pred -CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecchhh
Q 025114 150 -KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENI 217 (257)
Q Consensus 150 -~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~~l 217 (257)
+|++++||||+++| +.+++..|.++++++||++.+..+| |++..|.+|++..+++++++...+.+
T Consensus 160 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~---d~v~~l~~G~i~~~~~~~~~~~~~~~ 236 (506)
T PRK13549 160 KQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAIS---DTICVIRDGRHIGTRPAAGMTEDDII 236 (506)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhc---CEEEEEECCEEeeecccccCCHHHHH
Confidence 79999999999998 4555555788999999988777777 88888888887777777665544443
Q ss_pred hhhcc
Q 025114 218 AVKLG 222 (257)
Q Consensus 218 ~~~~~ 222 (257)
...++
T Consensus 237 ~~~~~ 241 (506)
T PRK13549 237 TMMVG 241 (506)
T ss_pred HHhhC
Confidence 33333
No 88
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.95 E-value=5.9e-29 Score=210.23 Aligned_cols=156 Identities=25% Similarity=0.290 Sum_probs=117.1
Q ss_pred EecceeeeeCc--cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh-----------
Q 025114 30 ESGNVHAPIDE--AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI----------- 92 (257)
Q Consensus 30 ~~~~l~~~~~~--~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~----------- 92 (257)
+++|+++.|++ +.+|+++||+|++ |++++|+||||||||||+|+|+|++ |.+.+++..+.
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~---G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 77 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKK---GEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKV 77 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcC---CcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhc
Confidence 46899999987 7899999999999 9999999999999999999999987 44555543210
Q ss_pred ---hh----cCCCCCHHHHHHHh----C--chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEE
Q 025114 93 ---EQ----SVDGTSVAEIFKLY----G--EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVW 155 (257)
Q Consensus 93 ---~~----~~~~~~v~e~~~~~----g--~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~ 155 (257)
.+ .+...++.+.+... + .........++++.+++.+ +.+..|||||+||+.+++++. +|++++
T Consensus 78 ~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 157 (211)
T cd03225 78 GLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILL 157 (211)
T ss_pred eEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 00 12245777765431 1 1112234456788888753 788999999999999998876 799999
Q ss_pred EECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhh
Q 025114 156 LDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYT 188 (257)
Q Consensus 156 LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~ 188 (257)
||||+++| +++++..|.+++.++|+++.+..+|
T Consensus 158 lDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~ 201 (211)
T cd03225 158 LDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELA 201 (211)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhC
Confidence 99999998 3444445788999999965544444
No 89
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.95 E-value=1.7e-29 Score=212.77 Aligned_cols=156 Identities=25% Similarity=0.272 Sum_probs=117.8
Q ss_pred EecceeeeeCc-cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh-----------h
Q 025114 30 ESGNVHAPIDE-AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI-----------E 93 (257)
Q Consensus 30 ~~~~l~~~~~~-~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~-----------~ 93 (257)
+++|+++.|++ +++|+++||++++ |++++|+||||||||||+++|+|++ |.+++++.++. .
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~ 77 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYA---GEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVM 77 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEe
Confidence 46899999987 8899999999999 9999999999999999999999987 44555554321 1
Q ss_pred hc----CCCCCHHHHHHHhCch--HHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH
Q 025114 94 QS----VDGTSVAEIFKLYGEG--FFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL 163 (257)
Q Consensus 94 ~~----~~~~~v~e~~~~~g~~--~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L 163 (257)
+. +...++.+.+...... .......++++.+++.+ +.+..|||||+||+.+++++. +|.+++||||+++|
T Consensus 78 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~L 157 (205)
T cd03226 78 QDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGL 157 (205)
T ss_pred cChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccC
Confidence 11 1234676666432110 11234567888888764 788999999999999998876 79999999999998
Q ss_pred -----------HHHHHhcCCCCccccCCCCCCchhh
Q 025114 164 -----------AQRIAAVGTDSRPLLHQCESGDAYT 188 (257)
Q Consensus 164 -----------~~rl~~~g~~~~~~~h~~~~~~~~~ 188 (257)
+++++..|.+++.++|+++.+..+|
T Consensus 158 D~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~ 193 (205)
T cd03226 158 DYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVC 193 (205)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC
Confidence 3445445788999999965544444
No 90
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.95 E-value=4e-29 Score=236.78 Aligned_cols=179 Identities=18% Similarity=0.225 Sum_probs=139.2
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh----------
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI---------- 92 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~---------- 92 (257)
++|+++|+++.|+++++|+|+||+|.+ |++++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~is~~i~~---Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 79 (501)
T PRK10762 3 ALLQLKGIDKAFPGVKALSGAALNVYP---GRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEA 79 (501)
T ss_pred ceEEEeeeEEEeCCeEEeeeeeEEEcC---CeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence 479999999999988999999999999 9999999999999999999999997 44555553220
Q ss_pred -----hh---cCCCCCHHHHHHHhC----------chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-C
Q 025114 93 -----EQ---SVDGTSVAEIFKLYG----------EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-K 150 (257)
Q Consensus 93 -----~~---~~~~~~v~e~~~~~g----------~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~ 150 (257)
.+ .+..+++.+.+.... ....+++..++++.+++.+ +++..|||||+||+.+|+++. +
T Consensus 80 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 159 (501)
T PRK10762 80 GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFE 159 (501)
T ss_pred CEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcC
Confidence 00 123467887765421 1112234567888888864 788999999999999998886 7
Q ss_pred CcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccce
Q 025114 151 GISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANAR 211 (257)
Q Consensus 151 ~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~ 211 (257)
|++++|||||++| +++++..|.+++.++||++.+..+| |++..|.+|++...++++++
T Consensus 160 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~---d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 160 SKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEIC---DDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred CCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC---CEEEEEeCCEEEEecCcCcC
Confidence 9999999999998 3555555788999999988777777 88878877776655555443
No 91
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.3e-29 Score=224.30 Aligned_cols=182 Identities=18% Similarity=0.168 Sum_probs=138.8
Q ss_pred eEEecceeeeeCcc-----ccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhh-------
Q 025114 28 VLESGNVHAPIDEA-----QVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTL------- 91 (257)
Q Consensus 28 ~l~~~~l~~~~~~~-----~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~------- 91 (257)
+|+++||++.|++. .+|+|+||+|.+ |++++|+||||||||||+++|+|++ |.+++++.+.
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~---Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~ 78 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQ---GEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTK 78 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeC---CCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccc
Confidence 58999999999753 599999999999 9999999999999999999999997 4444442110
Q ss_pred -------------------------------hhh----cCCCCCHHHHHHHh----Cc--hHHHHHHHHHHHHhccc---
Q 025114 92 -------------------------------IEQ----SVDGTSVAEIFKLY----GE--GFFREKETEVLQKLSLM--- 127 (257)
Q Consensus 92 -------------------------------~~~----~~~~~~v~e~~~~~----g~--~~~~~~~~~~l~~l~~~--- 127 (257)
..+ .+...++.+.+... +. ....++..++++.+++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~ 158 (305)
T PRK13651 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY 158 (305)
T ss_pred cccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh
Confidence 011 11234666665431 11 12234556788888884
Q ss_pred -CccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHH
Q 025114 128 -RQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRL 194 (257)
Q Consensus 128 -~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v 194 (257)
++.+..|||||+||+.+|+++. +|++++||||+++| +++++..|.++++++||++.+..+| |++
T Consensus 159 ~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~a---drv 235 (305)
T PRK13651 159 LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWT---KRT 235 (305)
T ss_pred hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhC---CEE
Confidence 2789999999999999998886 79999999999988 4555555889999999988777777 888
Q ss_pred HHHHHHHHHHHhcccceecch
Q 025114 195 STLWEERGEAYANANARVSLE 215 (257)
Q Consensus 195 ~~l~~~r~~~y~~~~~~~~~~ 215 (257)
..|.+|++...++++++....
T Consensus 236 ~vl~~G~i~~~g~~~~~~~~~ 256 (305)
T PRK13651 236 IFFKDGKIIKDGDTYDILSDN 256 (305)
T ss_pred EEEECCEEEEECCHHHHhcCH
Confidence 888888877777766655443
No 92
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.95 E-value=4.1e-29 Score=217.05 Aligned_cols=189 Identities=19% Similarity=0.221 Sum_probs=136.8
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchh---hhhhc---C
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDT---LIEQS---V 96 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~---~~~~~---~ 96 (257)
++|+++||++.|+++.+|+++||+|++ |++++|+||||||||||+|+|+|++ |.+.+++.. ++.+. .
T Consensus 3 ~~l~~~~l~~~~~~~~vl~~vs~~i~~---Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~ 79 (251)
T PRK09544 3 SLVSLENVSVSFGQRRVLSDVSLELKP---GKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLD 79 (251)
T ss_pred cEEEEeceEEEECCceEEEeEEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccc
Confidence 479999999999988899999999999 9999999999999999999999987 333343321 01111 1
Q ss_pred C--CCCHHHHHHHhCchHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-------
Q 025114 97 D--GTSVAEIFKLYGEGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL------- 163 (257)
Q Consensus 97 ~--~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L------- 163 (257)
. ..++.+++.... ....+...++++.+++.+ +.+..|||||+||+.+++++. +|++++||||+++|
T Consensus 80 ~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~ 158 (251)
T PRK09544 80 TTLPLTVNRFLRLRP-GTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVA 158 (251)
T ss_pred cccChhHHHHHhccc-cccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence 1 124444433211 112234556788888754 789999999999999998876 79999999999998
Q ss_pred ----HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecchhhhhhccc
Q 025114 164 ----AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGH 223 (257)
Q Consensus 164 ----~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~~l~~~~~~ 223 (257)
++++... +.+++.++|+++.+..+| +++..|. +++..+++++++.....+.+.|+.
T Consensus 159 l~~~L~~~~~~~g~tiiivsH~~~~i~~~~---d~i~~l~-~~i~~~g~~~~~~~~~~~~~~~~~ 219 (251)
T PRK09544 159 LYDLIDQLRRELDCAVLMVSHDLHLVMAKT---DEVLCLN-HHICCSGTPEVVSLHPEFISMFGP 219 (251)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHHHHhC---CEEEEEC-CceEeeCCHHHHhCCHHHHHHhCC
Confidence 3444444 788999999987776766 7776664 456566666665555555566643
No 93
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.5e-29 Score=219.92 Aligned_cols=181 Identities=20% Similarity=0.252 Sum_probs=138.2
Q ss_pred ceEEecceeeeeCc---cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh------
Q 025114 27 SVLESGNVHAPIDE---AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------ 93 (257)
Q Consensus 27 ~~l~~~~l~~~~~~---~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------ 93 (257)
++|+++||++.|++ +.+|+|+||+|++ |++++|+|+||||||||+|+|+|++ |.+++++.++..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 79 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQ---GEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDI 79 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeC---CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHH
Confidence 37999999999963 4599999999999 9999999999999999999999997 555665543210
Q ss_pred ------------hcCCCCCHHHHHHHhC------chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CC
Q 025114 94 ------------QSVDGTSVAEIFKLYG------EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KG 151 (257)
Q Consensus 94 ------------~~~~~~~v~e~~~~~g------~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~ 151 (257)
..+...++.+.+.... .....++..++++.+++.+ +.+..|||||+||+.+++++. +|
T Consensus 80 ~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p 159 (279)
T PRK13650 80 RHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRP 159 (279)
T ss_pred HhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 0123457777665321 1112344567888888864 788999999999999998886 79
Q ss_pred cEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecc
Q 025114 152 ISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSL 214 (257)
Q Consensus 152 ~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~ 214 (257)
++++||||+++| ++++... |.+++.++|+++.+ .+| |++..+.+|++...++++.+...
T Consensus 160 ~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~-~~~---dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 160 KIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV-ALS---DRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhC---CEEEEEECCEEEEECCHHHHHcC
Confidence 999999999998 4555544 88999999998766 456 88878888877666666555443
No 94
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.7e-29 Score=222.20 Aligned_cols=180 Identities=19% Similarity=0.198 Sum_probs=138.4
Q ss_pred eEEecceeeeeCc-----cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh------
Q 025114 28 VLESGNVHAPIDE-----AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI------ 92 (257)
Q Consensus 28 ~l~~~~l~~~~~~-----~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~------ 92 (257)
+|+++||++.|++ +.+|+||||+|.+ |++++|+||||||||||+++|+|++ |.+++++.++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIED---GEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKL 78 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcC---CCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccH
Confidence 5899999999974 4699999999999 9999999999999999999999997 44555553321
Q ss_pred ----------hh----cCCCCCHHHHHHHhC------chHHHHHHHHHHHHhccc-----CccccccChhHhHHHHHHHH
Q 025114 93 ----------EQ----SVDGTSVAEIFKLYG------EGFFREKETEVLQKLSLM-----RQLVVSTGGGAVTRPINWRY 147 (257)
Q Consensus 93 ----------~~----~~~~~~v~e~~~~~g------~~~~~~~~~~~l~~l~~~-----~~~v~~lsgG~~qr~~~a~~ 147 (257)
.+ .+...++.+.+.... ....+++..++++.+++. ++.+..|||||+||+.++++
T Consensus 79 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAra 158 (287)
T PRK13637 79 SDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGV 158 (287)
T ss_pred HHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHH
Confidence 01 112456777664321 111234456788888884 37889999999999999988
Q ss_pred hh-CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceec
Q 025114 148 MQ-KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVS 213 (257)
Q Consensus 148 l~-~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~ 213 (257)
+. +|.+++||||+++| ++++... |.+++.++|+++.+..+| |++..+.+|++..++++++++.
T Consensus 159 L~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~---drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 159 VAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLA---DRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred HHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC---CEEEEEECCEEEEECCHHHHHh
Confidence 86 79999999999998 3555444 789999999988777777 8887888888777776665543
No 95
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.95 E-value=2.5e-29 Score=237.62 Aligned_cols=181 Identities=16% Similarity=0.188 Sum_probs=135.7
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-------hc
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE-------QS 95 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~-------~~ 95 (257)
.+|+++|+++.|+++.+|+++||+|.+ |++++|+||||||||||+|+|+|++ |.+.+++..+.. ..
T Consensus 2 ~~l~~~~l~~~~~~~~il~~vsl~i~~---Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~ 78 (490)
T PRK10938 2 SSLQISQGTFRLSDTKTLQLPSLTLNA---GDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKL 78 (490)
T ss_pred ceEEEEeEEEEcCCeeecccceEEEcC---CCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHH
Confidence 479999999999988899999999999 9999999999999999999999987 334444322110 00
Q ss_pred C------------------CCCCHHHHHHHhCchHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcE
Q 025114 96 V------------------DGTSVAEIFKLYGEGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGIS 153 (257)
Q Consensus 96 ~------------------~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~v 153 (257)
+ .+.++.+++.. + ....++..++++.+++.+ +.+..|||||+||+.+++++. +|++
T Consensus 79 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 156 (490)
T PRK10938 79 VSDEWQRNNTDMLSPGEDDTGRTTAEIIQD-E-VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDL 156 (490)
T ss_pred hceeccCcchhhcccchhhccccHHHhccc-c-hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 0 01233332211 1 112334567888888854 789999999999999998876 7999
Q ss_pred EEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecch
Q 025114 154 VWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLE 215 (257)
Q Consensus 154 l~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~ 215 (257)
++||||+++| +++++..|.+++.++|+++.+..+| |++..|.+|++..+++++++.+.+
T Consensus 157 llLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~---d~v~~l~~G~i~~~~~~~~~~~~~ 226 (490)
T PRK10938 157 LILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFV---QFAGVLADCTLAETGEREEILQQA 226 (490)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhC---CEEEEEECCEEEEeCCHHHHhcch
Confidence 9999999998 4555555789999999988877777 888778788776666655554433
No 96
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.95 E-value=3.1e-29 Score=214.28 Aligned_cols=172 Identities=20% Similarity=0.227 Sum_probs=126.3
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh-----C----Cceecchhhhh------
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL-----G----YSFFDCDTLIE------ 93 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l-----g----~~~~d~~~~~~------ 93 (257)
|+++||++.|+++.+|+++||+|.+ |++++|+||||||||||+|+|+|++ . .+++++.++..
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPK---GEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 5789999999988999999999999 9999999999999999999999997 3 34555543210
Q ss_pred ---h---------cCCCCCHHHHHHHh----Cc-h--HHHHHHHHHHHHhcccC---cc--ccccChhHhHHHHHHHHhh
Q 025114 94 ---Q---------SVDGTSVAEIFKLY----GE-G--FFREKETEVLQKLSLMR---QL--VVSTGGGAVTRPINWRYMQ 149 (257)
Q Consensus 94 ---~---------~~~~~~v~e~~~~~----g~-~--~~~~~~~~~l~~l~~~~---~~--v~~lsgG~~qr~~~a~~l~ 149 (257)
. .+...++.+.+... +. . ..+++..++++.+++.+ +. +..|||||+||+.+++++.
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~ 157 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALA 157 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHh
Confidence 0 01145677765431 10 0 12234457788888754 44 5899999999999998876
Q ss_pred -CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhc
Q 025114 150 -KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN 207 (257)
Q Consensus 150 -~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~ 207 (257)
+|++++||||+++| ++++... .+++.++|+++.+..+| |++..+.+|++..+++
T Consensus 158 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~---d~i~~l~~G~i~~~g~ 223 (227)
T cd03260 158 NEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVA---DRTAFLLNGRLVEFGP 223 (227)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhC---CEEEEEeCCEEEEecC
Confidence 79999999999998 3444444 68899999977666666 6766666665544443
No 97
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=3.3e-29 Score=221.97 Aligned_cols=180 Identities=18% Similarity=0.207 Sum_probs=136.4
Q ss_pred eEEecceeeeeCc-----cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh------
Q 025114 28 VLESGNVHAPIDE-----AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI------ 92 (257)
Q Consensus 28 ~l~~~~l~~~~~~-----~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~------ 92 (257)
.|+++||++.|++ +++|+|+||+|++ |++++|+|+||||||||+|+|+|++ |.+.+++..+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 78 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPS---GSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcC---CCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccc
Confidence 4899999999974 5699999999999 9999999999999999999999987 44556553221
Q ss_pred ------------hh----cCCCCCHHHHHHHh----C--chHHHHHHHHHHHHhccc----CccccccChhHhHHHHHHH
Q 025114 93 ------------EQ----SVDGTSVAEIFKLY----G--EGFFREKETEVLQKLSLM----RQLVVSTGGGAVTRPINWR 146 (257)
Q Consensus 93 ------------~~----~~~~~~v~e~~~~~----g--~~~~~~~~~~~l~~l~~~----~~~v~~lsgG~~qr~~~a~ 146 (257)
.+ .+...++.+.+... + .....++..++++.+++. ++.+..|||||+||+.+++
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAr 158 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAG 158 (290)
T ss_pred hHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 00 01134666665432 1 111233456788888885 2689999999999999998
Q ss_pred Hhh-CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceec
Q 025114 147 YMQ-KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVS 213 (257)
Q Consensus 147 ~l~-~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~ 213 (257)
++. +|++++||||+++| ++++... |.++++++||++.+..+| |++..|.+|++...+++++++.
T Consensus 159 aL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~---drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 159 VLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYA---DQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC---CEEEEEECCEEEEECCHHHHhc
Confidence 886 79999999999988 3455443 889999999988777777 8887888787766666554443
No 98
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.95 E-value=4.3e-29 Score=217.41 Aligned_cols=177 Identities=22% Similarity=0.228 Sum_probs=133.0
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh---------
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI--------- 92 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~--------- 92 (257)
..+|+++||++.|+++.+|+++||+|++ |++++|+|+||||||||+++|+|++ |.+++++..+.
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~is~~i~~---Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (257)
T PRK10619 3 ENKLNVIDLHKRYGEHEVLKGVSLQANA---GDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79 (257)
T ss_pred CccEEEeeeEEEECCEEEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccc
Confidence 3568999999999988999999999999 9999999999999999999999997 44556554321
Q ss_pred -----------hh----------cCCCCCHHHHHHHh-----C--chHHHHHHHHHHHHhccc----CccccccChhHhH
Q 025114 93 -----------EQ----------SVDGTSVAEIFKLY-----G--EGFFREKETEVLQKLSLM----RQLVVSTGGGAVT 140 (257)
Q Consensus 93 -----------~~----------~~~~~~v~e~~~~~-----g--~~~~~~~~~~~l~~l~~~----~~~v~~lsgG~~q 140 (257)
.. .+...++.+.+... + ....+.+..++++.+++. ++.+..||||++|
T Consensus 80 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~q 159 (257)
T PRK10619 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQ 159 (257)
T ss_pred ccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHH
Confidence 01 11235777776431 1 111233456788888874 3678999999999
Q ss_pred HHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcc
Q 025114 141 RPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANA 208 (257)
Q Consensus 141 r~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~ 208 (257)
|+.+++++. +|.+++||||+++| ++++++.|.+++.++|+++.+..+| |++..+.+|++...+++
T Consensus 160 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~---d~i~~l~~G~i~~~~~~ 236 (257)
T PRK10619 160 RVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVS---SHVIFLHQGKIEEEGAP 236 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc---CEEEEEECCEEEEeCCH
Confidence 999998876 79999999999998 3455555889999999976666566 67666666655444433
No 99
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=3.6e-29 Score=221.36 Aligned_cols=179 Identities=22% Similarity=0.212 Sum_probs=136.4
Q ss_pred eEEecceeeeeCc-----cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh------
Q 025114 28 VLESGNVHAPIDE-----AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI------ 92 (257)
Q Consensus 28 ~l~~~~l~~~~~~-----~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~------ 92 (257)
+|+++|+++.|++ +.+|+|+||+|.+ |++++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~---Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEE---GSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNK 78 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeC---CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccc
Confidence 6899999999974 4699999999999 9999999999999999999999987 44555553221
Q ss_pred ------------hh----cCCCCCHHHHHHHh----C--chHHHHHHHHHHHHhccc----CccccccChhHhHHHHHHH
Q 025114 93 ------------EQ----SVDGTSVAEIFKLY----G--EGFFREKETEVLQKLSLM----RQLVVSTGGGAVTRPINWR 146 (257)
Q Consensus 93 ------------~~----~~~~~~v~e~~~~~----g--~~~~~~~~~~~l~~l~~~----~~~v~~lsgG~~qr~~~a~ 146 (257)
.+ .+...++.+.+... + .....++..++++.+++. ++.+..|||||+||+.+++
T Consensus 79 ~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~lar 158 (287)
T PRK13641 79 NLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAG 158 (287)
T ss_pred hHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHH
Confidence 00 01134666665431 1 111233456788888885 3789999999999999998
Q ss_pred Hhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 147 YMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 147 ~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
++. +|.+++||||+++| ++++.+.|.+++.++|+++.+..+| |++..|.+|++...++++.+.
T Consensus 159 al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~---d~v~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 159 VMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYA---DDVLVLEHGKLIKHASPKEIF 233 (287)
T ss_pred HHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC---CEEEEEECCEEEEeCCHHHHh
Confidence 886 79999999999998 4555545889999999988777777 888778777776666655444
No 100
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.95 E-value=1.7e-28 Score=207.82 Aligned_cols=156 Identities=22% Similarity=0.243 Sum_probs=118.9
Q ss_pred EecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh---------hhc-
Q 025114 30 ESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI---------EQS- 95 (257)
Q Consensus 30 ~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~---------~~~- 95 (257)
+++||++.|+++.+|+++||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++. .+.
T Consensus 1 ~~~~l~~~~~~~~~l~~isl~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~ 77 (213)
T cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKP---GEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRR 77 (213)
T ss_pred CcccceeEECCEEeeecceeEEcC---CCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecccc
Confidence 478999999988899999999999 9999999999999999999999987 44566654321 111
Q ss_pred -C---CCCCHHHHHHHhCc----------hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEE
Q 025114 96 -V---DGTSVAEIFKLYGE----------GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLD 157 (257)
Q Consensus 96 -~---~~~~v~e~~~~~g~----------~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LD 157 (257)
. ...++.+.+..... ...++...++++.+++.+ +.+..||||++||+.+++++. +|++++||
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllD 157 (213)
T cd03235 78 SIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLD 157 (213)
T ss_pred ccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 0 13578777654211 112234456788888753 788999999999999998876 79999999
Q ss_pred CCHHHH-----------HHHHHhcCCCCccccCCCCCCchhh
Q 025114 158 VPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYT 188 (257)
Q Consensus 158 ep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~ 188 (257)
||+++| +.++.+.+.+++.++|+++.+..+|
T Consensus 158 EPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~ 199 (213)
T cd03235 158 EPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYF 199 (213)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc
Confidence 999998 3444445778999999966555554
No 101
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.5e-29 Score=220.34 Aligned_cols=184 Identities=18% Similarity=0.168 Sum_probs=141.7
Q ss_pred ceEEecceeeeeC-ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh---------
Q 025114 27 SVLESGNVHAPID-EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI--------- 92 (257)
Q Consensus 27 ~~l~~~~l~~~~~-~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~--------- 92 (257)
++|+++|+++.|+ ++.+|+++||+|.+ |++++|+|+||||||||+|+|+|++ |.+++++.++.
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~ 80 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKK---GEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKL 80 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHH
Confidence 4799999999996 57899999999999 9999999999999999999999997 44555553320
Q ss_pred -------hhc----CCCCCHHHHHHHh----Cc--hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CC
Q 025114 93 -------EQS----VDGTSVAEIFKLY----GE--GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KG 151 (257)
Q Consensus 93 -------~~~----~~~~~v~e~~~~~----g~--~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~ 151 (257)
.+. ....++.+.+... +. ....++..++++.+++.+ +.+..||||++||+.+++++. +|
T Consensus 81 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p 160 (283)
T PRK13636 81 RESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEP 160 (283)
T ss_pred HhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 011 1234666665431 11 112234567788888754 789999999999999998876 79
Q ss_pred cEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecchh
Q 025114 152 ISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLEN 216 (257)
Q Consensus 152 ~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~~ 216 (257)
++++||||+++| ++++.+. |.++++++|+++.+..+| |++..|.+|++..+|+++.++....
T Consensus 161 ~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~---dri~~l~~G~i~~~g~~~~~~~~~~ 234 (283)
T PRK13636 161 KVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYC---DNVFVMKEGRVILQGNPKEVFAEKE 234 (283)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhC---CEEEEEECCEEEEeCCHHHHhcCHH
Confidence 999999999998 4555544 789999999988877777 8888888888887787766665443
No 102
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.4e-29 Score=216.18 Aligned_cols=178 Identities=20% Similarity=0.171 Sum_probs=131.7
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-------h
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE-------Q 94 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~-------~ 94 (257)
|++|+++|+++.|+++.+|+|+||+|.+ |++++|+||||||||||+|+|+|++ |.+++++.++.. .
T Consensus 1 ~~~l~~~~l~~~~~~~~~l~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 77 (241)
T PRK14250 1 MNEIEFKEVSYSSFGKEILKDISVKFEG---GAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRR 77 (241)
T ss_pred CceEEEEeEEEEeCCeeeeeeeeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhh
Confidence 4679999999999988899999999999 9999999999999999999999987 445666543211 0
Q ss_pred ---------cCCCCCHHHHHHHhCc--hHHHHHHHHHHHHhccc----CccccccChhHhHHHHHHHHhh-CCcEEEEEC
Q 025114 95 ---------SVDGTSVAEIFKLYGE--GFFREKETEVLQKLSLM----RQLVVSTGGGAVTRPINWRYMQ-KGISVWLDV 158 (257)
Q Consensus 95 ---------~~~~~~v~e~~~~~g~--~~~~~~~~~~l~~l~~~----~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDe 158 (257)
.+...++.+.+..... .....+..++++.+++. ++.+.+|||||+||+.+++++. +|++++|||
T Consensus 78 ~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 157 (241)
T PRK14250 78 KIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDE 157 (241)
T ss_pred cEEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 0112355555442110 01123445678888874 2788999999999999998876 799999999
Q ss_pred CHHHH-----------HHHHHh-cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccc
Q 025114 159 PLEAL-----------AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN 209 (257)
Q Consensus 159 p~~~L-----------~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~ 209 (257)
|+++| +++++. .|.+++.++|+++.+..+| |++..+.+|++...++++
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~---d~i~~l~~G~i~~~~~~~ 217 (241)
T PRK14250 158 PTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIG---DYTAFLNKGILVEYAKTY 217 (241)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhC---CEEEEEeCCEEEEeCCHH
Confidence 99998 345544 3789999999977666666 777667666654444433
No 103
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=5.3e-29 Score=214.90 Aligned_cols=170 Identities=17% Similarity=0.194 Sum_probs=127.5
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh-----------
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI----------- 92 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~----------- 92 (257)
+|+++|+++.|+++.+|+++||++.+ |++++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQ---GETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 68999999999988999999999999 9999999999999999999999987 44555554320
Q ss_pred --h-------h---cCCCCCHHHHHHHh-----Cc--hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-
Q 025114 93 --E-------Q---SVDGTSVAEIFKLY-----GE--GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ- 149 (257)
Q Consensus 93 --~-------~---~~~~~~v~e~~~~~-----g~--~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~- 149 (257)
. + .+.+.++.+.+... +. ........++++.+++.. +.+..||||++||+.+++++.
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~ 158 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMM 158 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 0 0 11346777766421 11 112233456788888753 778999999999999998886
Q ss_pred CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHH
Q 025114 150 KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGE 203 (257)
Q Consensus 150 ~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~ 203 (257)
+|++++||||+++| ++++.+.+.+++.++|+++....+| |++..+.+|++.
T Consensus 159 ~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~---d~i~~l~~g~i~ 220 (242)
T PRK11124 159 EPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTA---SRVVYMENGHIV 220 (242)
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhc---CEEEEEECCEEE
Confidence 79999999999998 3455445788999999966555555 666555555543
No 104
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.95 E-value=4.3e-29 Score=212.32 Aligned_cols=167 Identities=22% Similarity=0.298 Sum_probs=123.6
Q ss_pred EEecceeeeeCc--cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh----------
Q 025114 29 LESGNVHAPIDE--AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI---------- 92 (257)
Q Consensus 29 l~~~~l~~~~~~--~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~---------- 92 (257)
|+++||++.|++ +++|+++||++++ |++++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 77 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYK---GEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSL 77 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhE
Confidence 578999999987 7899999999999 9999999999999999999999987 44555554321
Q ss_pred ---hh---cCCCCCHHHHHHHh----C--chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEE
Q 025114 93 ---EQ---SVDGTSVAEIFKLY----G--EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWL 156 (257)
Q Consensus 93 ---~~---~~~~~~v~e~~~~~----g--~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~L 156 (257)
.+ .+...++.+.+... + .....+...++++.+++.+ +.+..|||||+||+.+++++. +|++++|
T Consensus 78 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 157 (220)
T cd03263 78 GYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLL 157 (220)
T ss_pred EEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 00 11245777766432 1 1112234457788888754 778999999999999998776 7999999
Q ss_pred ECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHH
Q 025114 157 DVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERG 202 (257)
Q Consensus 157 Dep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~ 202 (257)
|||+++| ++++.+ +.+++.++|+++.+..+| |++..+.+|++
T Consensus 158 DEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~---d~i~~l~~g~i 210 (220)
T cd03263 158 DEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEALC---DRIAIMSDGKL 210 (220)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhc---CEEEEEECCEE
Confidence 9999998 344433 578899999976555555 56555555543
No 105
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.6e-29 Score=219.36 Aligned_cols=180 Identities=19% Similarity=0.162 Sum_probs=135.3
Q ss_pred eEEecceeeeeC-ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh----------
Q 025114 28 VLESGNVHAPID-EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI---------- 92 (257)
Q Consensus 28 ~l~~~~l~~~~~-~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~---------- 92 (257)
||+++|+++.|+ ++.+|+|+||+|++ |++++|+||||||||||+|+|+|++ |.+++++..+.
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKK---GEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeC---CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHh
Confidence 488999999995 56799999999999 9999999999999999999999987 44455543221
Q ss_pred -----hh----cCCCCCHHHHHHHhCc------hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcE
Q 025114 93 -----EQ----SVDGTSVAEIFKLYGE------GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGIS 153 (257)
Q Consensus 93 -----~~----~~~~~~v~e~~~~~g~------~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~v 153 (257)
.+ .+.+.++.+.+..... ....+...++++.+++.+ +.+..|||||+||+.+++++. +|.+
T Consensus 78 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~l 157 (274)
T PRK13644 78 LVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPEC 157 (274)
T ss_pred heEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 00 1224567666543211 112334556788888754 788999999999999998876 7999
Q ss_pred EEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecc
Q 025114 154 VWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSL 214 (257)
Q Consensus 154 l~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~ 214 (257)
++||||+++| +++++..|.+++.++|+++.+ ..| |++..+.+|++...++++++...
T Consensus 158 llLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~-~~~---d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 158 LIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEEL-HDA---DRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH-hhC---CEEEEEECCEEEEECCHHHHhcC
Confidence 9999999988 345555588999999998766 346 88877878877666666555443
No 106
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.95 E-value=1.1e-28 Score=208.69 Aligned_cols=157 Identities=24% Similarity=0.289 Sum_probs=118.6
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh---------hh-
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI---------EQ- 94 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~---------~~- 94 (257)
|+++|+++.|+++.+|+++||++.+ |++++|+||||||||||+|+|+|++ |.+++++.++. ..
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~---G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKK---GEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 4789999999988899999999999 9999999999999999999999987 44555553321 00
Q ss_pred ---------cCCCCCHHHHHHHh-----Cc--hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEE
Q 025114 95 ---------SVDGTSVAEIFKLY-----GE--GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISV 154 (257)
Q Consensus 95 ---------~~~~~~v~e~~~~~-----g~--~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl 154 (257)
.+...++.+.+... +. ...++...++++.+++.+ +.+.+||||++|++.+++++. +|+++
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 157 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVM 157 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEE
Confidence 11246777766432 11 112233456788887753 788999999999999998876 79999
Q ss_pred EEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhh
Q 025114 155 WLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYT 188 (257)
Q Consensus 155 ~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~ 188 (257)
+||||+++| +++++..|.+++.++|+++.+..+|
T Consensus 158 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~ 202 (213)
T cd03262 158 LFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVA 202 (213)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhC
Confidence 999999988 3445445778899999965544444
No 107
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=5.9e-29 Score=215.97 Aligned_cols=176 Identities=15% Similarity=0.163 Sum_probs=130.0
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---------CCceecchhhh----
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---------GYSFFDCDTLI---- 92 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---------g~~~~d~~~~~---- 92 (257)
+.+|+++||++.|+++++|+|+||+|.+ |++++|+||||||||||+++|+|++ |.+++++.++.
T Consensus 2 ~~~l~~~~l~~~~~~~~~l~~is~~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 78 (253)
T PRK14267 2 KFAIETVNLRVYYGSNHVIKGVDLKIPQ---NGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78 (253)
T ss_pred cceEEEEeEEEEeCCeeeeecceEEEcC---CCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 4579999999999988899999999999 9999999999999999999999985 33455543321
Q ss_pred -----hh----------cCCCCCHHHHHHHh----C----chHHHHHHHHHHHHhccc-------CccccccChhHhHHH
Q 025114 93 -----EQ----------SVDGTSVAEIFKLY----G----EGFFREKETEVLQKLSLM-------RQLVVSTGGGAVTRP 142 (257)
Q Consensus 93 -----~~----------~~~~~~v~e~~~~~----g----~~~~~~~~~~~l~~l~~~-------~~~v~~lsgG~~qr~ 142 (257)
.. .+...++.+.+... + .........++++.+++. ++.+..||||++||+
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 158 (253)
T PRK14267 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRL 158 (253)
T ss_pred ChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHH
Confidence 00 11245777766532 1 111223345677777752 367899999999999
Q ss_pred HHHHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcc
Q 025114 143 INWRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANA 208 (257)
Q Consensus 143 ~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~ 208 (257)
.+++++. +|++++||||+++| ++++.+ +.+++.++|+++.+..+| |++..|.+|++...+++
T Consensus 159 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~---d~i~~l~~G~i~~~~~~ 232 (253)
T PRK14267 159 VIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQAARVS---DYVAFLYLGKLIEVGPT 232 (253)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHhhC---CEEEEEECCEEEEeCCH
Confidence 9998876 79999999999998 344433 578999999977666666 77766666665444443
No 108
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.95 E-value=6e-29 Score=236.05 Aligned_cols=183 Identities=18% Similarity=0.139 Sum_probs=141.1
Q ss_pred CcceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh--------
Q 025114 25 SASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI-------- 92 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~-------- 92 (257)
++++|+++|+++.|+++.+|+++||+|++ |++++|+||||||||||+|+|+|++ |.+.+++..+.
T Consensus 8 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~---Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 84 (510)
T PRK15439 8 APPLLCARSISKQYSGVEVLKGIDFTLHA---GEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAH 84 (510)
T ss_pred CCceEEEEeEEEEeCCceeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHH
Confidence 34589999999999998899999999999 9999999999999999999999987 44555553210
Q ss_pred -------hh---cCCCCCHHHHHHHhCc--hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEE
Q 025114 93 -------EQ---SVDGTSVAEIFKLYGE--GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWL 156 (257)
Q Consensus 93 -------~~---~~~~~~v~e~~~~~g~--~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~L 156 (257)
.+ .+...++.+.+..... ...+++..++++.+++.+ +.+..|||||+||+.+++++. +|++++|
T Consensus 85 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllL 164 (510)
T PRK15439 85 QLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILIL 164 (510)
T ss_pred hCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 01 1234677777654221 122344567888888854 789999999999999998876 7999999
Q ss_pred ECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceec
Q 025114 157 DVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVS 213 (257)
Q Consensus 157 Dep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~ 213 (257)
|||+++| +++++..|.+++.++||++.+..+| |++..|.+|++...++++.+..
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~---d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 165 DEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLA---DRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC---CEEEEEECCEEEEecChHHcCH
Confidence 9999998 4555555889999999987777777 7887777777665555555443
No 109
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=5.7e-29 Score=218.86 Aligned_cols=183 Identities=17% Similarity=0.176 Sum_probs=139.5
Q ss_pred eEEecceeeeeC-ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh----------
Q 025114 28 VLESGNVHAPID-EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI---------- 92 (257)
Q Consensus 28 ~l~~~~l~~~~~-~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~---------- 92 (257)
+|+++||++.|+ ++.+|+++||+|.+ |++++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~---Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEK---GEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVR 77 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHH
Confidence 478999999996 46799999999999 9999999999999999999999987 44555553320
Q ss_pred ------hh----cCCCCCHHHHHHHhC----c--hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCc
Q 025114 93 ------EQ----SVDGTSVAEIFKLYG----E--GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGI 152 (257)
Q Consensus 93 ------~~----~~~~~~v~e~~~~~g----~--~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~ 152 (257)
.+ .+...++.+.+.... . ...++...++++.+++.+ +.+..||||++|++.+++++. +|+
T Consensus 78 ~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~ 157 (275)
T PRK13639 78 KTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPE 157 (275)
T ss_pred hheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 01 112346666654311 0 112234567788888753 789999999999999998876 799
Q ss_pred EEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecchh
Q 025114 153 SVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLEN 216 (257)
Q Consensus 153 vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~~ 216 (257)
+++||||+++| +.++...|.+++.++|+++.+..+| |++..|.+|++..+++++.++....
T Consensus 158 llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~---d~i~~l~~G~i~~~g~~~~~~~~~~ 229 (275)
T PRK13639 158 IIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYA---DKVYVMSDGKIIKEGTPKEVFSDIE 229 (275)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhC---CEEEEEECCEEEEeCCHHHHhcChH
Confidence 99999999998 4555445789999999988777777 8887888888877777776665433
No 110
>PRK10908 cell division protein FtsE; Provisional
Probab=99.95 E-value=1.5e-28 Score=209.39 Aligned_cols=165 Identities=22% Similarity=0.286 Sum_probs=122.1
Q ss_pred eEEecceeeee-CccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh----------
Q 025114 28 VLESGNVHAPI-DEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI---------- 92 (257)
Q Consensus 28 ~l~~~~l~~~~-~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~---------- 92 (257)
||+++|+++.| +++.+|+++||+|.+ |++++|+||||||||||+++|+|++ |.+++++.++.
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~ 77 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRP---GEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHH
Confidence 47899999999 678899999999999 9999999999999999999999997 44455543221
Q ss_pred -------hh---cCCCCCHHHHHHHh----Cc--hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCc
Q 025114 93 -------EQ---SVDGTSVAEIFKLY----GE--GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGI 152 (257)
Q Consensus 93 -------~~---~~~~~~v~e~~~~~----g~--~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~ 152 (257)
.+ .+...++.+.+... +. ....+...++++.+++.+ +.+..|||||+||+.+++++. +|+
T Consensus 78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (222)
T PRK10908 78 RRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPA 157 (222)
T ss_pred HhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCC
Confidence 00 11345777766432 11 111223456788888754 788999999999999998886 799
Q ss_pred EEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHH
Q 025114 153 SVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLW 198 (257)
Q Consensus 153 vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~ 198 (257)
+++||||+++| +.++++.+.++++++|+++.+..+| |++..|.
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~---d~i~~l~ 211 (222)
T PRK10908 158 VLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRS---YRMLTLS 211 (222)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC---CEEEEEE
Confidence 99999999998 3444445788999999966554444 4543333
No 111
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=6.6e-29 Score=228.14 Aligned_cols=180 Identities=19% Similarity=0.213 Sum_probs=134.8
Q ss_pred ceEEecceeeeeCccc------------------------cccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh-
Q 025114 27 SVLESGNVHAPIDEAQ------------------------VLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL- 81 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~------------------------~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l- 81 (257)
.+|+++||+|.||... +|+++||+|++ |++++|+||||||||||+|+|+|++
T Consensus 3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~---Gei~~LvG~NGsGKSTLLr~I~Gl~~ 79 (400)
T PRK10070 3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEE---GEIFVIMGLSGSGKSTMVRLLNRLIE 79 (400)
T ss_pred cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcC---CCEEEEECCCCchHHHHHHHHHcCCC
Confidence 3567777777666543 89999999999 9999999999999999999999998
Q ss_pred ---CCceecchhhhh-----------h----------cCCCCCHHHHHHHh----Cc--hHHHHHHHHHHHHhcccC---
Q 025114 82 ---GYSFFDCDTLIE-----------Q----------SVDGTSVAEIFKLY----GE--GFFREKETEVLQKLSLMR--- 128 (257)
Q Consensus 82 ---g~~~~d~~~~~~-----------~----------~~~~~~v~e~~~~~----g~--~~~~~~~~~~l~~l~~~~--- 128 (257)
|.+++++.++.. . .+..+|+.+++... +. ...+++..++++.+++.+
T Consensus 80 p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~ 159 (400)
T PRK10070 80 PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAH 159 (400)
T ss_pred CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhh
Confidence 455666543210 0 12356888876542 11 122344567888888854
Q ss_pred ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHh-cCCCCccccCCCCCCchhhHHHHHHH
Q 025114 129 QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLS 195 (257)
Q Consensus 129 ~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~ 195 (257)
+.+..|||||+||+.+++++. +|++++||||+++| +.++.. .+.++++++|+++.+..+| |++.
T Consensus 160 ~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~---Dri~ 236 (400)
T PRK10070 160 SYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIG---DRIA 236 (400)
T ss_pred cCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhC---CEEE
Confidence 789999999999999998876 79999999999998 345543 4788999999988777777 7777
Q ss_pred HHHHHHHHHHhccccee
Q 025114 196 TLWEERGEAYANANARV 212 (257)
Q Consensus 196 ~l~~~r~~~y~~~~~~~ 212 (257)
.|.+|++...+++++++
T Consensus 237 vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 237 IMQNGEVVQVGTPDEIL 253 (400)
T ss_pred EEECCEEEecCCHHHHH
Confidence 77777766666555444
No 112
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.95 E-value=4.9e-29 Score=212.20 Aligned_cols=168 Identities=24% Similarity=0.241 Sum_probs=123.8
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh--------hh--
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI--------EQ-- 94 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~--------~~-- 94 (257)
|+++||++.|+++++|+++||++.+ |++++|+||||||||||+++|+|++ |.+++++..+. ..
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPE---GEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcC---CeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 5789999999988899999999999 9999999999999999999999987 44555553221 00
Q ss_pred --------cCCCCCHHHHHHHhCc----hHHHHHHHHHHHHh-ccc---CccccccChhHhHHHHHHHHhh-CCcEEEEE
Q 025114 95 --------SVDGTSVAEIFKLYGE----GFFREKETEVLQKL-SLM---RQLVVSTGGGAVTRPINWRYMQ-KGISVWLD 157 (257)
Q Consensus 95 --------~~~~~~v~e~~~~~g~----~~~~~~~~~~l~~l-~~~---~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LD 157 (257)
.+.++++.+.+..... ...+....++++.+ ++. ++.+..||||++||+.+++++. +|++++||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 157 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLD 157 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 1234577776654211 11122334566666 333 3788999999999999998876 79999999
Q ss_pred CCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHH
Q 025114 158 VPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERG 202 (257)
Q Consensus 158 ep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~ 202 (257)
||+++| ++++...+.++++++|+++.+..+| |++..+.+|++
T Consensus 158 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~---d~i~~l~~G~i 210 (222)
T cd03224 158 EPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIA---DRAYVLERGRV 210 (222)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhc---cEEEEeeCCeE
Confidence 999998 3445445788999999976655655 66656655543
No 113
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=5e-29 Score=220.38 Aligned_cols=181 Identities=17% Similarity=0.170 Sum_probs=136.8
Q ss_pred eEEecceeeeeCc-----cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh------
Q 025114 28 VLESGNVHAPIDE-----AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI------ 92 (257)
Q Consensus 28 ~l~~~~l~~~~~~-----~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~------ 92 (257)
.|+++||++.|++ +.+|+|+||+|.+ |++++|+|+||||||||+|+|+|++ |.+++++.++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~ 78 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQ---GKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDK 78 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccc
Confidence 4899999999964 3699999999999 9999999999999999999999987 45566653321
Q ss_pred ------------hh----cCCCCCHHHHHHHh----C--chHHHHHHHHHHHHhccc-C---ccccccChhHhHHHHHHH
Q 025114 93 ------------EQ----SVDGTSVAEIFKLY----G--EGFFREKETEVLQKLSLM-R---QLVVSTGGGAVTRPINWR 146 (257)
Q Consensus 93 ------------~~----~~~~~~v~e~~~~~----g--~~~~~~~~~~~l~~l~~~-~---~~v~~lsgG~~qr~~~a~ 146 (257)
.+ .+...++.+.+... + .....+...++++.+++. + +.+..|||||+||+.+++
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lar 158 (286)
T PRK13646 79 YIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVS 158 (286)
T ss_pred hHHHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 00 01123566655432 1 112234456788888885 3 679999999999999998
Q ss_pred Hhh-CCcEEEEECCHHHH-----------HHHHHh-cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceec
Q 025114 147 YMQ-KGISVWLDVPLEAL-----------AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVS 213 (257)
Q Consensus 147 ~l~-~~~vl~LDep~~~L-----------~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~ 213 (257)
++. +|++++||||+++| ++++.. .|.+++.++|+++.+..+| |++..|.+|++...++++.++.
T Consensus 159 aL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~---dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 159 ILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYA---DEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhC---CEEEEEECCEEEEECCHHHHHh
Confidence 886 79999999999998 455543 4889999999988777776 8887777787766666655554
Q ss_pred c
Q 025114 214 L 214 (257)
Q Consensus 214 ~ 214 (257)
.
T Consensus 236 ~ 236 (286)
T PRK13646 236 D 236 (286)
T ss_pred C
Confidence 3
No 114
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.95 E-value=4.3e-29 Score=210.69 Aligned_cols=157 Identities=21% Similarity=0.222 Sum_probs=119.2
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-----------
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE----------- 93 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~----------- 93 (257)
|+++|+++.|+++++|+++||++++ |++++|+||||||||||+++|+|++ |.+.+++.++..
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~---G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKK---GEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEe
Confidence 4789999999888999999999999 9999999999999999999999987 445555543210
Q ss_pred -h---cCCCCCHHHHHHHhCc--hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH
Q 025114 94 -Q---SVDGTSVAEIFKLYGE--GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL 163 (257)
Q Consensus 94 -~---~~~~~~v~e~~~~~g~--~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L 163 (257)
+ .+...++.+.+..... ....+...++++.+++.+ +.+..||||++||+.+++++. +|.+++||||+++|
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 157 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGL 157 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccC
Confidence 0 1124577776543211 011334566788888754 788999999999999998876 79999999999998
Q ss_pred -----------HHHHHhcCCCCccccCCCCCCchhh
Q 025114 164 -----------AQRIAAVGTDSRPLLHQCESGDAYT 188 (257)
Q Consensus 164 -----------~~rl~~~g~~~~~~~h~~~~~~~~~ 188 (257)
+++++..+.++++++|+++.+..+|
T Consensus 158 D~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~ 193 (208)
T cd03268 158 DPDGIKELRELILSLRDQGITVLISSHLLSEIQKVA 193 (208)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhc
Confidence 3444445788999999965544444
No 115
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.95 E-value=1.6e-28 Score=207.84 Aligned_cols=157 Identities=22% Similarity=0.237 Sum_probs=117.5
Q ss_pred EEecceeeeeCc-cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh----------h
Q 025114 29 LESGNVHAPIDE-AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI----------E 93 (257)
Q Consensus 29 l~~~~l~~~~~~-~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~----------~ 93 (257)
|+++|+++.|++ +.+|+++||++.+ |++++|+||||||||||+++|+|++ |.+++++.++. .
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~---G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 77 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISA---GEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLR 77 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHH
Confidence 478999999964 6899999999999 9999999999999999999999987 44455543221 0
Q ss_pred ----------hcCCCCCHHHHHHHh----C--chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcE
Q 025114 94 ----------QSVDGTSVAEIFKLY----G--EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGIS 153 (257)
Q Consensus 94 ----------~~~~~~~v~e~~~~~----g--~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~v 153 (257)
..+...++.+.+... + .....+...++++.+++.+ +.+..|||||+||+.+++++. +|++
T Consensus 78 ~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 157 (214)
T cd03292 78 RKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTI 157 (214)
T ss_pred HheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCE
Confidence 012245777765432 1 1112234456788888754 678999999999999998876 7999
Q ss_pred EEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhh
Q 025114 154 VWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYT 188 (257)
Q Consensus 154 l~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~ 188 (257)
++||||+++| ++++.+.|.+++.++|+++.+..+|
T Consensus 158 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~ 203 (214)
T cd03292 158 LIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTR 203 (214)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhC
Confidence 9999999998 3455445788999999965444444
No 116
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=7.5e-29 Score=218.53 Aligned_cols=180 Identities=18% Similarity=0.213 Sum_probs=137.2
Q ss_pred ceEEecceeeeeCc--cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-------
Q 025114 27 SVLESGNVHAPIDE--AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------- 93 (257)
Q Consensus 27 ~~l~~~~l~~~~~~--~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------- 93 (257)
++|+++||++.|++ +++|+++||+|.+ |++++|+||||||||||+++|+|++ |.+++++.++..
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~---Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~ 80 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYE---GEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVR 80 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcC---CCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHh
Confidence 47999999999974 5699999999999 9999999999999999999999997 455666543210
Q ss_pred -------h----cCCCCCHHHHHHHhC------chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCc
Q 025114 94 -------Q----SVDGTSVAEIFKLYG------EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGI 152 (257)
Q Consensus 94 -------~----~~~~~~v~e~~~~~g------~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~ 152 (257)
+ .+...++.+.+.... ....+++..++++.+++.+ +.+..||||++|++.+++++. +|.
T Consensus 81 ~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (279)
T PRK13635 81 RQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPD 160 (279)
T ss_pred hheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 0 122457777664321 1112334567788888754 789999999999999998876 799
Q ss_pred EEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceec
Q 025114 153 SVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVS 213 (257)
Q Consensus 153 vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~ 213 (257)
+++||||+++| ++++... |.+++.++|+++.+. .| |++..+.+|++...++++.+..
T Consensus 161 lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~---d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 161 IIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QA---DRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cC---CEEEEEECCEEEEECCHHHHhc
Confidence 99999999998 4555544 789999999977654 36 7887787887766666555443
No 117
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=9.6e-29 Score=221.65 Aligned_cols=186 Identities=16% Similarity=0.125 Sum_probs=140.8
Q ss_pred CcceEEecceeeeeCc-----cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh---
Q 025114 25 SASVLESGNVHAPIDE-----AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI--- 92 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~-----~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~--- 92 (257)
..++|+++|+++.|++ ..+|+|+||+|++ |++++|+|+||||||||+++|+|++ |.+++++.++.
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~---Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~ 94 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEK---NKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKK 94 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccc
Confidence 3468999999999974 3599999999999 9999999999999999999999987 44555542110
Q ss_pred ---------------------------hh----cCCCCCHHHHHHHh----C--chHHHHHHHHHHHHhccc----Cccc
Q 025114 93 ---------------------------EQ----SVDGTSVAEIFKLY----G--EGFFREKETEVLQKLSLM----RQLV 131 (257)
Q Consensus 93 ---------------------------~~----~~~~~~v~e~~~~~----g--~~~~~~~~~~~l~~l~~~----~~~v 131 (257)
.+ .+...++.+.+... + ....+.+..++++.+++. ++.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 174 (320)
T PRK13631 95 NNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSP 174 (320)
T ss_pred ccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 00 01233666665431 1 111233456778888874 3788
Q ss_pred cccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHH
Q 025114 132 VSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWE 199 (257)
Q Consensus 132 ~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~ 199 (257)
..|||||+||+.+++++. +|.+++||||+++| +.++...|.++++++|+++.+..+| |++..|.+
T Consensus 175 ~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~a---dri~vl~~ 251 (320)
T PRK13631 175 FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVA---DEVIVMDK 251 (320)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhC---CEEEEEEC
Confidence 999999999999998886 79999999999998 3445445889999999988777777 88888888
Q ss_pred HHHHHHhcccceecchh
Q 025114 200 ERGEAYANANARVSLEN 216 (257)
Q Consensus 200 ~r~~~y~~~~~~~~~~~ 216 (257)
|++...|+++++.....
T Consensus 252 G~i~~~g~~~~~~~~~~ 268 (320)
T PRK13631 252 GKILKTGTPYEIFTDQH 268 (320)
T ss_pred CEEEEeCCHHHHhcCHH
Confidence 88877777766554443
No 118
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=7.5e-28 Score=209.56 Aligned_cols=165 Identities=21% Similarity=0.234 Sum_probs=125.9
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh---------hh
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI---------EQ 94 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~---------~~ 94 (257)
||+++|+++.|+++.+|+|+||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++. .+
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q 77 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLES---GELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQ 77 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeC
Confidence 48999999999988899999999999 9999999999999999999999987 44555543321 11
Q ss_pred ---cCCCCCHHHHHHHh----Cc--hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECCHH
Q 025114 95 ---SVDGTSVAEIFKLY----GE--GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLE 161 (257)
Q Consensus 95 ---~~~~~~v~e~~~~~----g~--~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~ 161 (257)
.+...++.+.+... +. ........++++.+++.+ +.+..||||++||+.+++++. +|++++||||++
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~ 157 (255)
T PRK11248 78 NEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFG 157 (255)
T ss_pred CCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 12245777776532 11 112234567888888754 788999999999999998876 799999999999
Q ss_pred HH-----------HHHHHh-cCCCCccccCCCCCCchhhHHHHHHHHHH
Q 025114 162 AL-----------AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTLW 198 (257)
Q Consensus 162 ~L-----------~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l~ 198 (257)
+| ++++.. .|.+++.++|+++.+..+| |++..|.
T Consensus 158 ~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~---d~i~~l~ 203 (255)
T PRK11248 158 ALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMA---TELVLLS 203 (255)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC---CEEEEEe
Confidence 98 344432 3788999999977666666 6665554
No 119
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=7.9e-29 Score=225.03 Aligned_cols=178 Identities=17% Similarity=0.167 Sum_probs=136.0
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh----------
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE---------- 93 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~---------- 93 (257)
||++ ||+|.|+++.+ |+||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++..
T Consensus 1 ~l~~-~l~k~~~~~~~--~vsl~i~~---Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 74 (352)
T PRK11144 1 MLEL-NFKQQLGDLCL--TVNLTLPA---QGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPE 74 (352)
T ss_pred CeEE-EEEEEeCCEEE--EEEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchh
Confidence 4788 99999988653 89999999 9999999999999999999999987 444555433210
Q ss_pred --------h---cCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEEC
Q 025114 94 --------Q---SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDV 158 (257)
Q Consensus 94 --------~---~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDe 158 (257)
+ .+..+++.+++...-.....++..++++.+++.+ +.+..|||||+||+.+++++. +|++++|||
T Consensus 75 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDE 154 (352)
T PRK11144 75 KRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDE 154 (352)
T ss_pred hCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 0 1235678777754322222345567888888864 789999999999999998886 799999999
Q ss_pred CHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecc
Q 025114 159 PLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSL 214 (257)
Q Consensus 159 p~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~ 214 (257)
|+++| ++++.+. |.+++.++||++.+..+| |++..|.+|++..+++++++...
T Consensus 155 Pts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~---d~i~~l~~G~i~~~g~~~~i~~~ 219 (352)
T PRK11144 155 PLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLA---DRVVVLEQGKVKAFGPLEEVWAS 219 (352)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhC---CEEEEEeCCEEEEecCHHHHHhC
Confidence 99988 3444444 788999999987777777 88878888887777766555443
No 120
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.95 E-value=7.8e-29 Score=215.14 Aligned_cols=174 Identities=18% Similarity=0.213 Sum_probs=129.5
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh------------
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI------------ 92 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~------------ 92 (257)
|+++||++.|+++.+|+|+||+|++ |++++|+||||||||||+|+|+|++ |.+.+++..+.
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAA---GEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 4789999999988999999999999 9999999999999999999999987 44455543221
Q ss_pred --------hh----------cCCCCCHHHHHHHh-----C--chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHH
Q 025114 93 --------EQ----------SVDGTSVAEIFKLY-----G--EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPIN 144 (257)
Q Consensus 93 --------~~----------~~~~~~v~e~~~~~-----g--~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~ 144 (257)
.. .+...++.+.+... + ....+....++++.+++.+ +.+..||||++||+.+
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~l 157 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAI 157 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHH
Confidence 00 11245777766532 1 1112334467788888754 7889999999999999
Q ss_pred HHHhh-CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcc
Q 025114 145 WRYMQ-KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANA 208 (257)
Q Consensus 145 a~~l~-~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~ 208 (257)
++++. +|++++||||+++| ++++.+. |.+++.++|+++.+..+| |++..|.+|++...+++
T Consensus 158 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~---d~i~~l~~G~i~~~g~~ 231 (252)
T TIGR03005 158 ARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFA---DRVCFFDKGRIVEQGKP 231 (252)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhc---CEEEEEECCEEEEeCCH
Confidence 98876 79999999999998 3444443 789999999976665555 67666666665444433
No 121
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.7e-28 Score=208.92 Aligned_cols=164 Identities=26% Similarity=0.288 Sum_probs=122.3
Q ss_pred EEecceeeeeCc----cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh--------
Q 025114 29 LESGNVHAPIDE----AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI-------- 92 (257)
Q Consensus 29 l~~~~l~~~~~~----~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~-------- 92 (257)
|+++|+++.|++ +.+|+++||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~---G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~ 77 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEE---GEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGY 77 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeC---CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEE
Confidence 478999999987 7899999999999 9999999999999999999999987 44555553321
Q ss_pred -hh---cCCCCCHHHHHHHh----Cc--hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEEC
Q 025114 93 -EQ---SVDGTSVAEIFKLY----GE--GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDV 158 (257)
Q Consensus 93 -~~---~~~~~~v~e~~~~~----g~--~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDe 158 (257)
.+ .+...++.+.+... +. ....+...++++.+++.+ +.+..|||||+||+.+++++. +|++++|||
T Consensus 78 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDE 157 (220)
T cd03293 78 VFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDE 157 (220)
T ss_pred EecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence 11 12236777766432 11 112234457788888754 778999999999999998876 799999999
Q ss_pred CHHHH-----------HHHHHh-cCCCCccccCCCCCCchhhHHHHHHHHHH
Q 025114 159 PLEAL-----------AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTLW 198 (257)
Q Consensus 159 p~~~L-----------~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l~ 198 (257)
|+++| ++++.. .+.+++.++|+++.+..+| |++..|.
T Consensus 158 Pt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~---d~i~~l~ 206 (220)
T cd03293 158 PFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLA---DRVVVLS 206 (220)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhC---CEEEEEE
Confidence 99998 344433 3788999999966555555 5554443
No 122
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.5e-28 Score=215.86 Aligned_cols=188 Identities=20% Similarity=0.223 Sum_probs=134.7
Q ss_pred ceEEecceeeeeC-ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh--------
Q 025114 27 SVLESGNVHAPID-EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE-------- 93 (257)
Q Consensus 27 ~~l~~~~l~~~~~-~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~-------- 93 (257)
.+|+++||++.|+ ++.+|+|+||+|.+ |++++|+||||||||||+|+|+|++ |.+.+++.++..
T Consensus 5 ~~l~~~~l~~~~~~~~~il~~vsl~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~ 81 (272)
T PRK15056 5 AGIVVNDVTVTWRNGHTALRDASFTVPG---GSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVA 81 (272)
T ss_pred ceEEEEeEEEEecCCcEEEEeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEE
Confidence 3699999999995 57899999999999 9999999999999999999999997 445666543211
Q ss_pred ---hcC-----CCCCHHHHHHHh-----C-----chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CC
Q 025114 94 ---QSV-----DGTSVAEIFKLY-----G-----EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KG 151 (257)
Q Consensus 94 ---~~~-----~~~~v~e~~~~~-----g-----~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~ 151 (257)
+.. ...++.+++... + ....++...++++.+++.+ +.+..||||++||+.+++++. +|
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p 161 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQG 161 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 000 011233332110 0 0111233456778888753 789999999999999998876 79
Q ss_pred cEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecchhhhhh
Q 025114 152 ISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVK 220 (257)
Q Consensus 152 ~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~~l~~~ 220 (257)
++++||||+++| +++++..|.+++.++|+++.+..+| +++..+ +|++...++++.+.+.+.+.+.
T Consensus 162 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~---d~v~~~-~G~i~~~g~~~~~~~~~~~~~~ 237 (272)
T PRK15056 162 QVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFC---DYTVMV-KGTVLASGPTETTFTAENLELA 237 (272)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC---CEEEEE-CCEEEeecCHHhccCHHHHHHH
Confidence 999999999998 4455445788999999977766666 666434 7777666666655544444444
Q ss_pred c
Q 025114 221 L 221 (257)
Q Consensus 221 ~ 221 (257)
|
T Consensus 238 ~ 238 (272)
T PRK15056 238 F 238 (272)
T ss_pred h
Confidence 4
No 123
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=2.4e-28 Score=212.25 Aligned_cols=183 Identities=19% Similarity=0.212 Sum_probs=145.1
Q ss_pred cceEEecceeeeeCcc------------------------ccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 26 ASVLESGNVHAPIDEA------------------------QVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~------------------------~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
+..++++||+|-||.+ .-++|+||+|+. ||+++|+|-||||||||+|+|+++.
T Consensus 2 ~~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~---GeIfViMGLSGSGKSTLvR~~NrLi 78 (386)
T COG4175 2 MVKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEE---GEIFVIMGLSGSGKSTLVRLLNRLI 78 (386)
T ss_pred CceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecC---CeEEEEEecCCCCHHHHHHHHhccC
Confidence 3468899999988643 248999999999 9999999999999999999999998
Q ss_pred ----CCceecchhhhh------------------hc---CCCCCHHHHHHHh----C--chHHHHHHHHHHHHhcccC--
Q 025114 82 ----GYSFFDCDTLIE------------------QS---VDGTSVAEIFKLY----G--EGFFREKETEVLQKLSLMR-- 128 (257)
Q Consensus 82 ----g~~~~d~~~~~~------------------~~---~~~~~v~e~~~~~----g--~~~~~~~~~~~l~~l~~~~-- 128 (257)
|.+++++.++.. +. ++..|+.++..+. | +..-+++..++|+.+|+..
T Consensus 79 ept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~ 158 (386)
T COG4175 79 EPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYA 158 (386)
T ss_pred CCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhh
Confidence 667888877631 11 1234455544331 1 1223445667888888864
Q ss_pred -ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHHH-----------HHHHh-cCCCCccccCCCCCCchhhHHHHHH
Q 025114 129 -QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEALA-----------QRIAA-VGTDSRPLLHQCESGDAYTEALNRL 194 (257)
Q Consensus 129 -~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L~-----------~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v 194 (257)
+++.+||||++||+.+|++|. +|+++++|||++.|+ -+|+. ...|++.++||++++.++. +||
T Consensus 159 ~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG---~rI 235 (386)
T COG4175 159 DKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG---DRI 235 (386)
T ss_pred hcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc---ceE
Confidence 899999999999999999998 799999999999982 33332 3689999999999999987 999
Q ss_pred HHHHHHHHHHHhcccceecc
Q 025114 195 STLWEERGEAYANANARVSL 214 (257)
Q Consensus 195 ~~l~~~r~~~y~~~~~~~~~ 214 (257)
..|.+|+++..|+|++++..
T Consensus 236 aimkdG~ivQ~Gtp~eIl~~ 255 (386)
T COG4175 236 AIMKDGEIVQVGTPEEILLN 255 (386)
T ss_pred EEecCCeEEEeCCHHHHHcC
Confidence 99999999999999877743
No 124
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.95 E-value=1.3e-28 Score=229.43 Aligned_cols=183 Identities=22% Similarity=0.292 Sum_probs=146.5
Q ss_pred CcceEEecceeeeeCc-----------cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecch
Q 025114 25 SASVLESGNVHAPIDE-----------AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCD 89 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~-----------~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~ 89 (257)
..++++++||+|.|.. ..+++||||+|.+ ||+++|||+||||||||+|+|+|++ |.+.+++.
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~---GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~ 353 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLRE---GETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQ 353 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCc
Confidence 5688999999999973 3689999999999 9999999999999999999999998 44556554
Q ss_pred hh-------hh---------h-----cCCCCCHHHHHHH----hCc---hHHHHHHHHHHHHhcccC----ccccccChh
Q 025114 90 TL-------IE---------Q-----SVDGTSVAEIFKL----YGE---GFFREKETEVLQKLSLMR----QLVVSTGGG 137 (257)
Q Consensus 90 ~~-------~~---------~-----~~~~~~v~e~~~~----~g~---~~~~~~~~~~l~~l~~~~----~~v~~lsgG 137 (257)
+. .. + .-+.+|+.+++.. ++. ...+++..++++.+++.. +++.+||||
T Consensus 354 ~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGG 433 (539)
T COG1123 354 DLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGG 433 (539)
T ss_pred ccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcc
Confidence 41 00 0 0134566665432 221 223345677899988864 899999999
Q ss_pred HhHHHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHH
Q 025114 138 AVTRPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEA 204 (257)
Q Consensus 138 ~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~ 204 (257)
|+||+++|++|. +|+++++|||++.| +.+++++ |.+.+.++||+..+...| |++..|+.|+++.
T Consensus 434 QrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~---drv~vm~~G~iVE 510 (539)
T COG1123 434 QRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIA---DRVAVMYDGRIVE 510 (539)
T ss_pred hhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhC---ceEEEEECCeEEE
Confidence 999999999987 89999999999988 4666654 899999999999899888 9999999999998
Q ss_pred Hhcccceec
Q 025114 205 YANANARVS 213 (257)
Q Consensus 205 y~~~~~~~~ 213 (257)
.|+.+.++.
T Consensus 511 ~G~~~~v~~ 519 (539)
T COG1123 511 EGPTEKVFE 519 (539)
T ss_pred eCCHHHHhc
Confidence 887766663
No 125
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.95 E-value=3.7e-28 Score=206.71 Aligned_cols=153 Identities=25% Similarity=0.287 Sum_probs=115.6
Q ss_pred eEEecceeeeeCc----cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh------
Q 025114 28 VLESGNVHAPIDE----AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------ 93 (257)
Q Consensus 28 ~l~~~~l~~~~~~----~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------ 93 (257)
+|+++||++.|++ +++|+++||+|.+ |++++|+||||||||||+++|+|++ |.+++++.++..
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~---G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~ 77 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGK---GEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNER 77 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHH
Confidence 4789999999964 5699999999999 9999999999999999999999987 445555432210
Q ss_pred -----h----------cCCCCCHHHHHHHh----C--chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh
Q 025114 94 -----Q----------SVDGTSVAEIFKLY----G--EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ 149 (257)
Q Consensus 94 -----~----------~~~~~~v~e~~~~~----g--~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~ 149 (257)
. .+...++.+.+... . .....+...++++.+++.+ +.+..|||||+||+.+++++.
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 157 (221)
T TIGR02211 78 AKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALV 157 (221)
T ss_pred HHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh
Confidence 1 11245777766431 1 1112234457788888754 788999999999999998876
Q ss_pred -CCcEEEEECCHHHH-----------HHHHHh-cCCCCccccCCCCC
Q 025114 150 -KGISVWLDVPLEAL-----------AQRIAA-VGTDSRPLLHQCES 183 (257)
Q Consensus 150 -~~~vl~LDep~~~L-----------~~rl~~-~g~~~~~~~h~~~~ 183 (257)
+|++++||||+++| ++++.. .+.+++.++|+++.
T Consensus 158 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~ 204 (221)
T TIGR02211 158 NQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLEL 204 (221)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 79999999999998 344443 37889999999543
No 126
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.95 E-value=6.9e-29 Score=221.09 Aligned_cols=167 Identities=19% Similarity=0.213 Sum_probs=127.7
Q ss_pred eeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh-------------hh---c
Q 025114 36 APIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI-------------EQ---S 95 (257)
Q Consensus 36 ~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~-------------~~---~ 95 (257)
|.|+++++|+++||+|++ |++++|+||||||||||+|+|+|++ |.+.+++.++. .+ .
T Consensus 1 k~y~~~~~l~~vs~~i~~---Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~ 77 (302)
T TIGR01188 1 KVYGDFKAVDGVNFKVRE---GEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASV 77 (302)
T ss_pred CeeCCeeEEeeeeEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCC
Confidence 468888899999999999 9999999999999999999999997 44555553321 00 1
Q ss_pred CCCCCHHHHHHHhCc------hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH--
Q 025114 96 VDGTSVAEIFKLYGE------GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL-- 163 (257)
Q Consensus 96 ~~~~~v~e~~~~~g~------~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L-- 163 (257)
+..+|+.+.+..... ....++..++++.+++.+ +.+..|||||+||+.+|+++. +|++++||||+++|
T Consensus 78 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~ 157 (302)
T TIGR01188 78 DEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP 157 (302)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 235688887654221 112334567888888854 789999999999999998776 79999999999998
Q ss_pred ---------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcc
Q 025114 164 ---------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANA 208 (257)
Q Consensus 164 ---------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~ 208 (257)
++++++.|.+++.++|+++.+..+| |++..|.+|++...+++
T Consensus 158 ~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~---d~v~~l~~G~i~~~g~~ 208 (302)
T TIGR01188 158 RTRRAIWDYIRALKEEGVTILLTTHYMEEADKLC---DRIAIIDHGRIIAEGTP 208 (302)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhC---CEEEEEECCEEEEECCH
Confidence 4555555889999999988777777 77777766665544443
No 127
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.95 E-value=2.8e-27 Score=199.31 Aligned_cols=156 Identities=22% Similarity=0.207 Sum_probs=119.8
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh----------
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE---------- 93 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~---------- 93 (257)
||+++|+++.|+++.+|+++||+|++ |++++|+|+||||||||+++|+|++ |.+++++..+..
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~ 77 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSFTLNA---GELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLL 77 (204)
T ss_pred CeEEEEEEEEECCEEEEecceEEECC---CcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheE
Confidence 48899999999988899999999999 9999999999999999999999987 445565543210
Q ss_pred ------hcCCCCCHHHHHHHhCch---HHHHHHHHHHHHhccc---CccccccChhHhHHHHHHHHhh-CCcEEEEECCH
Q 025114 94 ------QSVDGTSVAEIFKLYGEG---FFREKETEVLQKLSLM---RQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPL 160 (257)
Q Consensus 94 ------~~~~~~~v~e~~~~~g~~---~~~~~~~~~l~~l~~~---~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~ 160 (257)
..+...++.+.+...... ...+...++++.+++. ++.+..||||++|++.+++++. +|++++||||+
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 157 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPF 157 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 011235777776543211 1223445678888875 3788999999999999998876 79999999999
Q ss_pred HHH-----------HHHHHhcCCCCccccCCCCCCch
Q 025114 161 EAL-----------AQRIAAVGTDSRPLLHQCESGDA 186 (257)
Q Consensus 161 ~~L-----------~~rl~~~g~~~~~~~h~~~~~~~ 186 (257)
++| ++++++.+.+++.++|+++.+..
T Consensus 158 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 158 TAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVAS 194 (204)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhcc
Confidence 998 34444457789999999665443
No 128
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1e-28 Score=213.21 Aligned_cols=170 Identities=24% Similarity=0.293 Sum_probs=127.7
Q ss_pred EEecceeeeeCc-cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh----------
Q 025114 29 LESGNVHAPIDE-AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE---------- 93 (257)
Q Consensus 29 l~~~~l~~~~~~-~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~---------- 93 (257)
|+++||++.|++ +.+|+++||+|.+ |++++|+||||||||||+|+|+|++ |.+++++.++..
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 77 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAK---GEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKI 77 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECC---CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcce
Confidence 478999999988 7899999999999 9999999999999999999999987 445555533210
Q ss_pred ----h---cCCCCCHHHHHHHh----C--chHHHHHHHHHHHHhccc-----CccccccChhHhHHHHHHHHhh-CCcEE
Q 025114 94 ----Q---SVDGTSVAEIFKLY----G--EGFFREKETEVLQKLSLM-----RQLVVSTGGGAVTRPINWRYMQ-KGISV 154 (257)
Q Consensus 94 ----~---~~~~~~v~e~~~~~----g--~~~~~~~~~~~l~~l~~~-----~~~v~~lsgG~~qr~~~a~~l~-~~~vl 154 (257)
+ .+...|+.+.+... + ....++...++++.+++. ++.+..||||++||+.+++++. +|+++
T Consensus 78 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 157 (242)
T cd03295 78 GYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLL 157 (242)
T ss_pred EEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 0 12246777766432 1 112233456778888875 3678999999999999998876 79999
Q ss_pred EEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHH
Q 025114 155 WLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEA 204 (257)
Q Consensus 155 ~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~ 204 (257)
+||||+++| +++++.. |.++++++|+++.+..+| |++..|.+|++..
T Consensus 158 llDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~---d~i~~l~~G~i~~ 216 (242)
T cd03295 158 LMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLA---DRIAIMKNGEIVQ 216 (242)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhC---CEEEEEECCEEEE
Confidence 999999988 3444433 788999999976655565 6766666665543
No 129
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2e-28 Score=216.15 Aligned_cols=182 Identities=19% Similarity=0.198 Sum_probs=138.2
Q ss_pred ceEEecceeeeeCc--cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh-------CCceecchhhh-----
Q 025114 27 SVLESGNVHAPIDE--AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL-------GYSFFDCDTLI----- 92 (257)
Q Consensus 27 ~~l~~~~l~~~~~~--~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l-------g~~~~d~~~~~----- 92 (257)
.+|+++|+++.|++ +.+|+++||+|.+ |++++|+||||||||||+++|+|++ |.+.+++..+.
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~---Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~ 80 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPR---GSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVW 80 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcC---CCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHH
Confidence 47999999999964 5699999999999 9999999999999999999999987 44555553321
Q ss_pred ---------hh----cCCCCCHHHHHHHh----C--chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-
Q 025114 93 ---------EQ----SVDGTSVAEIFKLY----G--EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ- 149 (257)
Q Consensus 93 ---------~~----~~~~~~v~e~~~~~----g--~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~- 149 (257)
.+ .+...++.+.+... + .....++..++++.+++.+ +.+..||||++||+.+++++.
T Consensus 81 ~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~ 160 (282)
T PRK13640 81 DIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAV 160 (282)
T ss_pred HHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 00 12245777766431 1 1112234566788888754 789999999999999998876
Q ss_pred CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecch
Q 025114 150 KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLE 215 (257)
Q Consensus 150 ~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~ 215 (257)
+|++++||||+++| ++++... |.+++.++|+++.+ .+| |++..|.+|++..+++++.++...
T Consensus 161 ~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~-~~~---d~i~~l~~G~i~~~g~~~~~~~~~ 234 (282)
T PRK13640 161 EPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA-NMA---DQVLVLDDGKLLAQGSPVEIFSKV 234 (282)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhC---CEEEEEECCEEEEeCCHHHHhcCH
Confidence 79999999999998 3445443 78999999998776 456 888888888888777776655443
No 130
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.4e-28 Score=215.39 Aligned_cols=181 Identities=19% Similarity=0.252 Sum_probs=135.7
Q ss_pred cceEEecceeeeeCc------cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh--
Q 025114 26 ASVLESGNVHAPIDE------AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE-- 93 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~------~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~-- 93 (257)
.++|+++|+++.|++ +.+|+++||+|.+ |++++|+|+||||||||+++|+|++ |.+.+++..+..
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~ 78 (280)
T PRK13633 2 NEMIKCKNVSYKYESNEESTEKLALDDVNLEVKK---GEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEE 78 (280)
T ss_pred CceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccc
Confidence 357999999999963 5699999999999 9999999999999999999999997 445555433210
Q ss_pred -------------h----cCCCCCHHHHHHHh----C--chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHH
Q 025114 94 -------------Q----SVDGTSVAEIFKLY----G--EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRY 147 (257)
Q Consensus 94 -------------~----~~~~~~v~e~~~~~----g--~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~ 147 (257)
+ .+...++.+.+... + ....++...++++.+++.+ +.+..||||++||+.++++
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~lara 158 (280)
T PRK13633 79 NLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGI 158 (280)
T ss_pred cHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHH
Confidence 0 01133455554332 1 1112344567788888754 7899999999999999988
Q ss_pred hh-CCcEEEEECCHHHH-----------HHHHHh-cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceec
Q 025114 148 MQ-KGISVWLDVPLEAL-----------AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVS 213 (257)
Q Consensus 148 l~-~~~vl~LDep~~~L-----------~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~ 213 (257)
+. +|++++||||+++| ++++.+ .|.+++.++|+++.+.. | |++..+.+|++...++++++..
T Consensus 159 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~---d~v~~l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 159 LAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-A---DRIIVMDSGKVVMEGTPKEIFK 233 (280)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-C---CEEEEEECCEEEEecCHHHHhc
Confidence 76 79999999999998 455544 38899999999877654 6 8887887887776676665544
No 131
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.3e-28 Score=212.44 Aligned_cols=177 Identities=16% Similarity=0.176 Sum_probs=130.7
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC---------Cceecchhhh----
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG---------YSFFDCDTLI---- 92 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg---------~~~~d~~~~~---- 92 (257)
.++|+++|+++.|+++.+|+++||+|.+ |++++|+|+||||||||+|+|+|++. .+++++.++.
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (254)
T PRK14273 5 EAIIETENLNLFYTDFKALNNINIKILK---NSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNF 81 (254)
T ss_pred CceEEEeeeEEEeCCceeecceeeEEcC---CCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccc
Confidence 4579999999999988899999999999 99999999999999999999999863 4455553321
Q ss_pred -----hh---------cCCCCCHHHHHHHhCc-------hHHHHHHHHHHHHhcc-------cCccccccChhHhHHHHH
Q 025114 93 -----EQ---------SVDGTSVAEIFKLYGE-------GFFREKETEVLQKLSL-------MRQLVVSTGGGAVTRPIN 144 (257)
Q Consensus 93 -----~~---------~~~~~~v~e~~~~~g~-------~~~~~~~~~~l~~l~~-------~~~~v~~lsgG~~qr~~~ 144 (257)
.. .....++.+++..... ...++...++++.+++ .++.+..|||||+||+.+
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~l 161 (254)
T PRK14273 82 DILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCI 161 (254)
T ss_pred cHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHH
Confidence 00 0113577776643211 1122334566777665 236789999999999999
Q ss_pred HHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccc
Q 025114 145 WRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN 209 (257)
Q Consensus 145 a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~ 209 (257)
++++. +|++++||||+++| +++++ .+.+++.++|+++.+..+| |++..|.+|++...++++
T Consensus 162 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~~~~~~~---d~i~~l~~G~i~~~g~~~ 234 (254)
T PRK14273 162 ARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQQAGRIS---DRTAFFLNGCIEEESSTD 234 (254)
T ss_pred HHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhC---CEEEEEECCEEEEeCCHH
Confidence 98876 79999999999998 34453 3678899999977666666 777666666655444443
No 132
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.1e-28 Score=216.04 Aligned_cols=180 Identities=21% Similarity=0.312 Sum_probs=140.2
Q ss_pred eEEecceeeeeCc----cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC---------Cceecchhhhh-
Q 025114 28 VLESGNVHAPIDE----AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG---------YSFFDCDTLIE- 93 (257)
Q Consensus 28 ~l~~~~l~~~~~~----~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg---------~~~~d~~~~~~- 93 (257)
+|+++||+..|.. ..+++||||+|++ ||+++|||.|||||||+++.|.|++. .+.+++.++..
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~---GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l 77 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKK---GEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSL 77 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcC---CcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccC
Confidence 4789999999953 4699999999999 99999999999999999999999984 23445543311
Q ss_pred --h---cCCCC-----------------C----HHHHHHHhC----chHHHHHHHHHHHHhcccC------ccccccChh
Q 025114 94 --Q---SVDGT-----------------S----VAEIFKLYG----EGFFREKETEVLQKLSLMR------QLVVSTGGG 137 (257)
Q Consensus 94 --~---~~~~~-----------------~----v~e~~~~~g----~~~~~~~~~~~l~~l~~~~------~~v~~lsgG 137 (257)
+ .+.|. + +.|.+..+. +...+++..++|+.+++.+ .++.+||||
T Consensus 78 ~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGG 157 (316)
T COG0444 78 SEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGG 157 (316)
T ss_pred CHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCc
Confidence 0 11111 1 223333222 1123445668899999864 789999999
Q ss_pred HhHHHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHh-cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHH
Q 025114 138 AVTRPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEA 204 (257)
Q Consensus 138 ~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~ 204 (257)
++||+.+|-++. +|++++.||||.+| ++++++ .|.+++.++||+..+..+| |++..||+|+++.
T Consensus 158 MrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~a---Dri~VMYaG~iVE 234 (316)
T COG0444 158 MRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIA---DRVAVMYAGRIVE 234 (316)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc---ceEEEEECcEEEE
Confidence 999999997665 89999999999998 466665 5899999999999888888 9999999999998
Q ss_pred Hhcccceec
Q 025114 205 YANANARVS 213 (257)
Q Consensus 205 y~~~~~~~~ 213 (257)
+|++++++.
T Consensus 235 ~g~~~~i~~ 243 (316)
T COG0444 235 EGPVEEIFK 243 (316)
T ss_pred eCCHHHHhc
Confidence 888877663
No 133
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.94 E-value=1.7e-28 Score=211.67 Aligned_cols=169 Identities=20% Similarity=0.218 Sum_probs=123.1
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh------CCceecchhhh--------h-
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL------GYSFFDCDTLI--------E- 93 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l------g~~~~d~~~~~--------~- 93 (257)
|+++||++.|+++.+|+|+||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++. .
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKK---GEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 5789999999988899999999999 9999999999999999999999983 44555553221 0
Q ss_pred ------h---cCCCCCHHHHHHHhCc-------------hHHHHHHHHHHHHhccc----Ccccc-ccChhHhHHHHHHH
Q 025114 94 ------Q---SVDGTSVAEIFKLYGE-------------GFFREKETEVLQKLSLM----RQLVV-STGGGAVTRPINWR 146 (257)
Q Consensus 94 ------~---~~~~~~v~e~~~~~g~-------------~~~~~~~~~~l~~l~~~----~~~v~-~lsgG~~qr~~~a~ 146 (257)
+ .+.+.++.+++..... ..+.+...++++.+++. ++.+. .|||||+||+.+++
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~ 157 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQ 157 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHH
Confidence 0 1123466665532100 11123345677888775 25565 59999999999998
Q ss_pred Hhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchh-hHHHHHHHHHHHHHHH
Q 025114 147 YMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAY-TEALNRLSTLWEERGE 203 (257)
Q Consensus 147 ~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~-~~~~~~v~~l~~~r~~ 203 (257)
++. +|.+++||||+++| ++++++.|.+++.++|+++.+..+ | |++..|.+|++.
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~---d~i~~l~~G~i~ 224 (243)
T TIGR01978 158 MALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKP---DYVHVLLDGRIV 224 (243)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcC---CeEEEEeCCEEE
Confidence 876 79999999999998 345544578899999997665554 4 666556566544
No 134
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.94 E-value=1.5e-28 Score=221.28 Aligned_cols=182 Identities=17% Similarity=0.223 Sum_probs=137.9
Q ss_pred CcceEEecceeeeeC----ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCC-------ceecchhhhh
Q 025114 25 SASVLESGNVHAPID----EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGY-------SFFDCDTLIE 93 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~----~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~-------~~~d~~~~~~ 93 (257)
.+++|+++||++.|+ ...+|+||||+|.+ |++++|+|+||||||||+++|+|++.+ +++++.++..
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~---Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~ 85 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRA---GETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILN 85 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcC---CCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCc
Confidence 456899999999994 35799999999999 999999999999999999999999843 4555543210
Q ss_pred ------------------hc-----CCCCCHHHHHH----HhC---chHHHHHHHHHHHHhcccC------ccccccChh
Q 025114 94 ------------------QS-----VDGTSVAEIFK----LYG---EGFFREKETEVLQKLSLMR------QLVVSTGGG 137 (257)
Q Consensus 94 ------------------~~-----~~~~~v~e~~~----~~g---~~~~~~~~~~~l~~l~~~~------~~v~~lsgG 137 (257)
+. ...+++.+.+. ..+ ......+..++++.+++.+ +.+.+||||
T Consensus 86 ~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG 165 (330)
T PRK09473 86 LPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGG 165 (330)
T ss_pred CCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHH
Confidence 00 01245555432 111 1112334567788888753 578999999
Q ss_pred HhHHHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHH
Q 025114 138 AVTRPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEA 204 (257)
Q Consensus 138 ~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~ 204 (257)
|+||+.+|+++. +|+++++|||+++| ++++++. |.+++.++||++.+..+| |++..|++|++..
T Consensus 166 ~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~---Dri~vm~~G~ive 242 (330)
T PRK09473 166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGIC---DKVLVMYAGRTME 242 (330)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhC---CEEEEEECCEEEE
Confidence 999999998876 79999999999998 4555544 889999999988777777 8888898888877
Q ss_pred Hhccccee
Q 025114 205 YANANARV 212 (257)
Q Consensus 205 y~~~~~~~ 212 (257)
.|++++++
T Consensus 243 ~g~~~~i~ 250 (330)
T PRK09473 243 YGNARDVF 250 (330)
T ss_pred ECCHHHHH
Confidence 77766554
No 135
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.5e-27 Score=194.89 Aligned_cols=160 Identities=20% Similarity=0.244 Sum_probs=122.3
Q ss_pred cceEEecceeeeeCccc--cccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh-------
Q 025114 26 ASVLESGNVHAPIDEAQ--VLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI------- 92 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~--~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~------- 92 (257)
|.++.+++++..|.++. +|+|+|++|.+ |+.++++||||||||||++++||+. |.+.+++..+.
T Consensus 1 M~~l~~~~~sl~y~g~~~~~le~vsL~ia~---ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaerg 77 (259)
T COG4525 1 MCMLNVSHLSLSYEGKPRSALEDVSLTIAS---GELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERG 77 (259)
T ss_pred CceeehhheEEecCCcchhhhhccceeecC---CCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccce
Confidence 46788999999999877 99999999999 9999999999999999999999987 33344443221
Q ss_pred -----hhcCCCCCHHHHHHHh----C--chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEE
Q 025114 93 -----EQSVDGTSVAEIFKLY----G--EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLD 157 (257)
Q Consensus 93 -----~~~~~~~~v~e~~~~~----g--~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LD 157 (257)
+..++.+++.+++++. | +..-++...+.+..+++.+ +.+.+||||++||+.+|++|. +|.+++||
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLD 157 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLD 157 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeec
Confidence 1112344566665442 2 2233455678888888864 899999999999999999997 89999999
Q ss_pred CCHHHHH------------HHHHhcCCCCccccCCCCCCchhh
Q 025114 158 VPLEALA------------QRIAAVGTDSRPLLHQCESGDAYT 188 (257)
Q Consensus 158 ep~~~L~------------~rl~~~g~~~~~~~h~~~~~~~~~ 188 (257)
||+..|+ .-.+..|..+..++|+++++.-.+
T Consensus 158 EPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlfla 200 (259)
T COG4525 158 EPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLA 200 (259)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhh
Confidence 9998882 222335888999999976654443
No 136
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.6e-28 Score=212.99 Aligned_cols=179 Identities=18% Similarity=0.240 Sum_probs=132.4
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---------CCceecchhhhh----
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---------GYSFFDCDTLIE---- 93 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---------g~~~~d~~~~~~---- 93 (257)
++|+++|+++.|+++.+|+++||+|++ |++++|+|+||||||||+|+|+|+. |.+.+++.++..
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGISMEIEE---KSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78 (250)
T ss_pred cEEEEEEEEEEECCEeEEeeeeEEEeC---CCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccccccc
Confidence 579999999999988899999999999 9999999999999999999999963 444555433211
Q ss_pred -----h---------cCCCCCHHHHHHHh----C---chHHHHHHHHHHHHhccc-------CccccccChhHhHHHHHH
Q 025114 94 -----Q---------SVDGTSVAEIFKLY----G---EGFFREKETEVLQKLSLM-------RQLVVSTGGGAVTRPINW 145 (257)
Q Consensus 94 -----~---------~~~~~~v~e~~~~~----g---~~~~~~~~~~~l~~l~~~-------~~~v~~lsgG~~qr~~~a 145 (257)
. .....++.+.+... + .........++++.+++. ++.+..|||||+||+.++
T Consensus 79 ~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 158 (250)
T PRK14245 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIA 158 (250)
T ss_pred HHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHH
Confidence 0 01124666655431 1 011223345677777752 367889999999999999
Q ss_pred HHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 146 RYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 146 ~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
+++. +|++++||||+++| ++++. .+.+++.++|+++.+..+| |++..|.+|++...+++++++
T Consensus 159 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~---d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 159 RAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQQAARVS---DKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhC---CEEEEEECCEEEEECCHHHHh
Confidence 8876 79999999999988 34443 3678999999977666666 787777777766556555444
No 137
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.6e-28 Score=214.16 Aligned_cols=189 Identities=20% Similarity=0.222 Sum_probs=137.9
Q ss_pred cceEEecceeeeeC--ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh-------
Q 025114 26 ASVLESGNVHAPID--EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI------- 92 (257)
Q Consensus 26 ~~~l~~~~l~~~~~--~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~------- 92 (257)
.++|+++|+++.|+ ++.+|+++||+|.+ |++++|+||||||||||+++|+|++ |.+++++.++.
T Consensus 5 ~~~l~~~nl~~~~~~~~~~il~~isl~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 81 (271)
T PRK13632 5 SVMIKVENVSFSYPNSENNALKNVSFEINE---GEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEI 81 (271)
T ss_pred ceEEEEEeEEEEcCCCCccceeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHH
Confidence 35799999999995 56799999999999 9999999999999999999999997 44455543221
Q ss_pred -------hh----cCCCCCHHHHHHHh------CchHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CC
Q 025114 93 -------EQ----SVDGTSVAEIFKLY------GEGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KG 151 (257)
Q Consensus 93 -------~~----~~~~~~v~e~~~~~------g~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~ 151 (257)
.+ .+...|+.+.+... .....+....++++.+++.+ +.+..|||||+||+.+++++. +|
T Consensus 82 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 161 (271)
T PRK13632 82 RKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNP 161 (271)
T ss_pred hcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 00 12245777766431 11112233456788888753 788999999999999998886 79
Q ss_pred cEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecchhhhh
Q 025114 152 ISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAV 219 (257)
Q Consensus 152 ~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~~l~~ 219 (257)
++++||||+++| ++++... +.+++.++|+++.+. +| |++..|.+|++...++++.+.....+.+
T Consensus 162 ~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~---d~v~~l~~G~i~~~g~~~~~~~~~~~~~ 237 (271)
T PRK13632 162 EIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LA---DKVIVFSEGKLIAQGKPKEILNNKEILE 237 (271)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hC---CEEEEEECCEEEEecCHHHHhcCHHHHH
Confidence 999999999998 3444444 478899999977653 56 7777777777665565555444443333
Q ss_pred hc
Q 025114 220 KL 221 (257)
Q Consensus 220 ~~ 221 (257)
.+
T Consensus 238 ~~ 239 (271)
T PRK13632 238 KA 239 (271)
T ss_pred hc
Confidence 33
No 138
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.4e-28 Score=211.07 Aligned_cols=177 Identities=18% Similarity=0.178 Sum_probs=129.9
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh----------
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE---------- 93 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~---------- 93 (257)
||+++||++.|++.. .++||++.+ |++++|+||||||||||+|+|+|++ |.+++++..+..
T Consensus 1 ~l~~~~l~~~~~~~~--~~is~~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~ 75 (232)
T PRK10771 1 MLKLTDITWLYHHLP--MRFDLTVER---GERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSM 75 (232)
T ss_pred CeEEEEEEEEECCcc--ceeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEE
Confidence 478999999998654 499999999 9999999999999999999999987 445555543210
Q ss_pred -----hcCCCCCHHHHHHHhC------chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEEC
Q 025114 94 -----QSVDGTSVAEIFKLYG------EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDV 158 (257)
Q Consensus 94 -----~~~~~~~v~e~~~~~g------~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDe 158 (257)
..+.+.++.+.+.... .........++++.+++.+ +.+..||||++|++.+++++. +|++++|||
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 155 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDE 155 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 0123467877765321 1112334567788888753 788999999999999998776 799999999
Q ss_pred CHHHH-----------HHHHHh-cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 159 PLEAL-----------AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 159 p~~~L-----------~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
|+++| ++++.+ .|.++++++|+++.+..+| |++..+.+|++...++++.+.
T Consensus 156 P~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~---d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 156 PFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIA---PRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhC---CEEEEEECCEEEEeCCHHHHH
Confidence 99998 334433 3778999999977666666 777666666655444444333
No 139
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.94 E-value=2.5e-28 Score=213.57 Aligned_cols=177 Identities=24% Similarity=0.272 Sum_probs=129.9
Q ss_pred eEEecceeeeeC---------ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh--
Q 025114 28 VLESGNVHAPID---------EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI-- 92 (257)
Q Consensus 28 ~l~~~~l~~~~~---------~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~-- 92 (257)
+|+++||++.|+ ++.+|+|+||+|++ |++++|+|+||||||||+++|+|++ |.+++++.++.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~ 78 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEE---GETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQL 78 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccc
Confidence 689999999995 36799999999999 9999999999999999999999997 44555553221
Q ss_pred ---------------hh-----cCCCCCHHHHHHHh-----C--chHHHHHHHHHHHHhccc----CccccccChhHhHH
Q 025114 93 ---------------EQ-----SVDGTSVAEIFKLY-----G--EGFFREKETEVLQKLSLM----RQLVVSTGGGAVTR 141 (257)
Q Consensus 93 ---------------~~-----~~~~~~v~e~~~~~-----g--~~~~~~~~~~~l~~l~~~----~~~v~~lsgG~~qr 141 (257)
.+ .....++.+++... + .....+...++++.+++. ++.+..||||++||
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qr 158 (265)
T TIGR02769 79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQR 158 (265)
T ss_pred CHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHH
Confidence 00 01235666654321 1 111223456788888874 37889999999999
Q ss_pred HHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcc
Q 025114 142 PINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANA 208 (257)
Q Consensus 142 ~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~ 208 (257)
+.+++++. +|++++||||+++| ++++... |.++++++|+++.+..+| |++..|.+|++...+++
T Consensus 159 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~---d~i~~l~~G~i~~~g~~ 235 (265)
T TIGR02769 159 INIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFC---QRVAVMDKGQIVEECDV 235 (265)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHh---cEEEEEeCCEEEEECCH
Confidence 99998876 79999999999988 3444443 789999999977666666 77766666655544444
Q ss_pred cc
Q 025114 209 NA 210 (257)
Q Consensus 209 ~~ 210 (257)
++
T Consensus 236 ~~ 237 (265)
T TIGR02769 236 AQ 237 (265)
T ss_pred HH
Confidence 43
No 140
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.94 E-value=9.3e-29 Score=211.74 Aligned_cols=169 Identities=21% Similarity=0.225 Sum_probs=122.7
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh--------hh--
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI--------EQ-- 94 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~--------~~-- 94 (257)
|+++||++.|+++++|+|+||++++ |++++|+|+||||||||+++|+|++ |.+++++.++. ..
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPK---GEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 5789999999988999999999999 9999999999999999999999997 44555543211 00
Q ss_pred --------cCCCCCHHHHHHHhCc---hHHHHHHHHHHHHhc-c---cCccccccChhHhHHHHHHHHhh-CCcEEEEEC
Q 025114 95 --------SVDGTSVAEIFKLYGE---GFFREKETEVLQKLS-L---MRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDV 158 (257)
Q Consensus 95 --------~~~~~~v~e~~~~~g~---~~~~~~~~~~l~~l~-~---~~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDe 158 (257)
.+...++.+.+..... ....+...++++.++ + .++.+..||||++|++.+++++. +|++++|||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDE 157 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDE 157 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 1124577776543211 011122345566554 2 24789999999999999998876 799999999
Q ss_pred CHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHH
Q 025114 159 PLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGE 203 (257)
Q Consensus 159 p~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~ 203 (257)
|+++| +.++.+. +.+++.++|+++.+..+| |++..+.+|++.
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~---d~v~~l~~g~i~ 211 (230)
T TIGR03410 158 PTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELA---DRYYVMERGRVV 211 (230)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhC---CEEEEEECCEEE
Confidence 99998 3444443 788999999976655555 666555555443
No 141
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.94 E-value=1.1e-28 Score=210.51 Aligned_cols=169 Identities=20% Similarity=0.194 Sum_probs=126.8
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh----------hh
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI----------EQ 94 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~----------~~ 94 (257)
|+++|+++.|+++.+|+++||++.+ |++++|+||||||||||+++|+|.+ |.+++++..+. .+
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q 77 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPK---NSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIE 77 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcC
Confidence 5789999999988999999999999 9999999999999999999999987 44455443211 11
Q ss_pred ---cCCCCCHHHHHHHhCc--hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH--
Q 025114 95 ---SVDGTSVAEIFKLYGE--GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL-- 163 (257)
Q Consensus 95 ---~~~~~~v~e~~~~~g~--~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L-- 163 (257)
.+...++.+.+..... ........++++.+++.+ +.+..||||++|++.+++++. +|++++||||+++|
T Consensus 78 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~ 157 (223)
T TIGR03740 78 SPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDP 157 (223)
T ss_pred CCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCH
Confidence 1224577776543210 011234567788888754 778999999999999998876 79999999999998
Q ss_pred ---------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHH
Q 025114 164 ---------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGE 203 (257)
Q Consensus 164 ---------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~ 203 (257)
+.++...|.+++.++|+++.+..+| +++..+.+|++.
T Consensus 158 ~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~---d~i~~l~~g~i~ 203 (223)
T TIGR03740 158 IGIQELRELIRSFPEQGITVILSSHILSEVQQLA---DHIGIISEGVLG 203 (223)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhc---CEEEEEeCCEEE
Confidence 3445445778999999976666666 666666666543
No 142
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.4e-28 Score=212.00 Aligned_cols=180 Identities=17% Similarity=0.155 Sum_probs=134.4
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---------CCceecchhhhh---
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---------GYSFFDCDTLIE--- 93 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---------g~~~~d~~~~~~--- 93 (257)
.++|+++|+++.|+++.+|+++||+|.+ |++++|+|+||||||||+++|+|++ |.+.+++.++..
T Consensus 2 ~~~l~~~~l~~~~~~~~~l~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 78 (251)
T PRK14270 2 KIKMESKNLNLWYGEKQALNDINLPIYE---NKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDV 78 (251)
T ss_pred ccEEEEEEeEEEECCeeeeeceeEEEcC---CCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccc
Confidence 4689999999999988899999999999 9999999999999999999999974 455665543310
Q ss_pred ------h---------cCCCCCHHHHHHHh----Cc---hHHHHHHHHHHHHhccc-------CccccccChhHhHHHHH
Q 025114 94 ------Q---------SVDGTSVAEIFKLY----GE---GFFREKETEVLQKLSLM-------RQLVVSTGGGAVTRPIN 144 (257)
Q Consensus 94 ------~---------~~~~~~v~e~~~~~----g~---~~~~~~~~~~l~~l~~~-------~~~v~~lsgG~~qr~~~ 144 (257)
. .....++.+++... +. ........++++.+++. ++.+..||||++|++.+
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 158 (251)
T PRK14270 79 DVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCI 158 (251)
T ss_pred cHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHH
Confidence 0 01235777765431 11 11223344677777652 36789999999999999
Q ss_pred HHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 145 WRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 145 a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
++++. +|++++||||+++| ++++.+ +.+++.++|+++.+..+| |++..+.+|++..+++++++.
T Consensus 159 aral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~---d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 159 ARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQASRVS---DYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHHHHHhc---CEEEEEECCeEEEeCCHHHHh
Confidence 98876 79999999999998 344433 578899999977666666 787777777776666655544
No 143
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.94 E-value=2.7e-28 Score=208.36 Aligned_cols=167 Identities=22% Similarity=0.264 Sum_probs=120.7
Q ss_pred eEEecceeeeeCcc----ccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh-------
Q 025114 28 VLESGNVHAPIDEA----QVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI------- 92 (257)
Q Consensus 28 ~l~~~~l~~~~~~~----~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~------- 92 (257)
+|+++||++.|+++ .+|+++||+|++ |++++|+||||||||||+++|+|++ |.+++++.++.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 77 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKK---GETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLR 77 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhH
Confidence 47899999999865 799999999999 9999999999999999999999987 44455443211
Q ss_pred ----------hh-----cCCCCCHHHHHHHh----CchH--HH-HH-HHHHHHHhccc----CccccccChhHhHHHHHH
Q 025114 93 ----------EQ-----SVDGTSVAEIFKLY----GEGF--FR-EK-ETEVLQKLSLM----RQLVVSTGGGAVTRPINW 145 (257)
Q Consensus 93 ----------~~-----~~~~~~v~e~~~~~----g~~~--~~-~~-~~~~l~~l~~~----~~~v~~lsgG~~qr~~~a 145 (257)
.+ .....++.+++... +... .. .. ..++++.+++. ++.+..|||||+||+.++
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 157 (228)
T cd03257 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIA 157 (228)
T ss_pred HHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHH
Confidence 00 11235676765421 1110 01 11 13677887773 378899999999999999
Q ss_pred HHhh-CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHH
Q 025114 146 RYMQ-KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEE 200 (257)
Q Consensus 146 ~~l~-~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~ 200 (257)
+++. +|++++||||+++| ++++... |.+++.++|+++.+..+| |++..|.+|
T Consensus 158 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~---d~i~~l~~G 222 (228)
T cd03257 158 RALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIA---DRVAVMYAG 222 (228)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhc---CeEEEEeCC
Confidence 8776 79999999999988 3444444 788999999966555455 555444443
No 144
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.94 E-value=4.7e-26 Score=184.45 Aligned_cols=168 Identities=39% Similarity=0.595 Sum_probs=146.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccCccccccCh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGG 136 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~~lsg 136 (257)
...++|||++||||||++|.||..|+..|+|.|..+++.. ++++.++|...|+..||+.|.++++.+...+..|.++||
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~-g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~ViaTGG 80 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRT-GMSIAEIFEEEGEEGFRRLETEVLKELLEEDNAVIATGG 80 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHH-CcCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEECCC
Confidence 3568999999999999999999999999999999999999 999999999999999999999999998877789999999
Q ss_pred hHhHHHHHHHHhh-CCcEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecch
Q 025114 137 GAVTRPINWRYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLE 215 (257)
Q Consensus 137 G~~qr~~~a~~l~-~~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~ 215 (257)
|.+....+..+|. ++.++||+.|.+.+.+|++. ...||++++.+. ...+..|++.|.+.|...+..+
T Consensus 81 G~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~~--~~~RPll~~~~~-------~~~l~~L~~~R~~~Y~e~a~~~--- 148 (172)
T COG0703 81 GAVLSEENRNLLKKRGIVVYLDAPFETLYERLQR--DRKRPLLQTEDP-------REELEELLEERQPLYREVADFI--- 148 (172)
T ss_pred ccccCHHHHHHHHhCCeEEEEeCCHHHHHHHhcc--ccCCCcccCCCh-------HHHHHHHHHHHHHHHHHhCcEE---
Confidence 9999999999998 68999999999999999983 467999887332 1568899999999999865444
Q ss_pred hhhhhccccCCCCCCHHHHHHHHHHHHHhhh
Q 025114 216 NIAVKLGHKDVSSLTPVTIAIEALEQIEGFL 246 (257)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~~ 246 (257)
++++..+ ++++.+|++.+..++
T Consensus 149 --------~~~~~~~-~~v~~~i~~~l~~~~ 170 (172)
T COG0703 149 --------IDTDDRS-EEVVEEILEALEGSL 170 (172)
T ss_pred --------ecCCCCc-HHHHHHHHHHHHHhc
Confidence 1344444 899999988887654
No 145
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.94 E-value=1.7e-28 Score=212.39 Aligned_cols=175 Identities=21% Similarity=0.244 Sum_probs=129.3
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC---------Cceecchhhhh-----
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG---------YSFFDCDTLIE----- 93 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg---------~~~~d~~~~~~----- 93 (257)
+|+++||++.|++..+++|+||+|++ |++++|+|+||||||||+|+|+|++. .+++++.++..
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~ 77 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPK---NQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDV 77 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECC---CCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccch
Confidence 47899999999988899999999999 99999999999999999999999863 33454433210
Q ss_pred ----h---------cCCCCCHHHHHHHh----C---chHHHHHHHHHHHHhccc----C---ccccccChhHhHHHHHHH
Q 025114 94 ----Q---------SVDGTSVAEIFKLY----G---EGFFREKETEVLQKLSLM----R---QLVVSTGGGAVTRPINWR 146 (257)
Q Consensus 94 ----~---------~~~~~~v~e~~~~~----g---~~~~~~~~~~~l~~l~~~----~---~~v~~lsgG~~qr~~~a~ 146 (257)
. .....++.+.+... + .....+...++++.+++. + +.+..|||||+||+.+++
T Consensus 78 ~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lar 157 (247)
T TIGR00972 78 VELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIAR 157 (247)
T ss_pred HHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHH
Confidence 0 01125676665431 1 111223445678888875 3 678999999999999998
Q ss_pred Hhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccc
Q 025114 147 YMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN 209 (257)
Q Consensus 147 ~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~ 209 (257)
++. +|++++||||+++| ++++++ +.+++.++|+++.+..+| |++..|.+|++...++++
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~---d~i~~l~~G~i~~~~~~~ 228 (247)
T TIGR00972 158 ALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQQAARIS---DRTAFFYDGELVEYGPTE 228 (247)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHHHHHHhC---CEEEEEECCEEEEeCCHH
Confidence 886 79999999999998 344443 478899999977666666 777677676655444443
No 146
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.8e-28 Score=212.25 Aligned_cols=175 Identities=19% Similarity=0.203 Sum_probs=129.3
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh-------CCceecchhhhh------
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL-------GYSFFDCDTLIE------ 93 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l-------g~~~~d~~~~~~------ 93 (257)
++++++|+++.|+++.+|+|+||+|.+ |++++|+|+||||||||+++|+|++ |.+++++.++..
T Consensus 1 ~~~~~~~l~~~~~~~~~l~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~ 77 (246)
T PRK14269 1 MIAKTTNLNLFYGKKQALFDINMQIEQ---NKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77 (246)
T ss_pred CceeeeeeEEEECCEeeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHH
Confidence 368899999999988899999999999 9999999999999999999999985 334555543210
Q ss_pred -h---------cCCCCCHHHHHHHh----Cc----hHHHHHHHHHHHHhccc-------CccccccChhHhHHHHHHHHh
Q 025114 94 -Q---------SVDGTSVAEIFKLY----GE----GFFREKETEVLQKLSLM-------RQLVVSTGGGAVTRPINWRYM 148 (257)
Q Consensus 94 -~---------~~~~~~v~e~~~~~----g~----~~~~~~~~~~l~~l~~~-------~~~v~~lsgG~~qr~~~a~~l 148 (257)
. .....++.+.+... +. ...+.+..++++.+++. ++.+..||||++||+.+++++
T Consensus 78 ~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 157 (246)
T PRK14269 78 RKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARAL 157 (246)
T ss_pred hhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHH
Confidence 0 01134677765432 11 11223345678888873 367889999999999999888
Q ss_pred h-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcc
Q 025114 149 Q-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANA 208 (257)
Q Consensus 149 ~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~ 208 (257)
. +|++++||||+++| +.++. .+.+++.++|+++.+..+| |++..+.+|++...+++
T Consensus 158 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~---d~i~~l~~G~i~~~g~~ 225 (246)
T PRK14269 158 AIKPKLLLLDEPTSALDPISSGVIEELLKELS-HNLSMIMVTHNMQQGKRVA---DYTAFFHLGELIEFGES 225 (246)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhhC---cEEEEEECCEEEEECCH
Confidence 6 79999999999988 34443 3788999999977666666 77766766665444433
No 147
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.6e-28 Score=211.86 Aligned_cols=178 Identities=15% Similarity=0.182 Sum_probs=131.8
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---------CCceecchhhhh----
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---------GYSFFDCDTLIE---- 93 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---------g~~~~d~~~~~~---- 93 (257)
..|+++|+++.|+++.+|+|+||+|++ |++++|+|+||||||||+++|+|++ |.+++++..+..
T Consensus 3 ~~l~~~nl~~~~~~~~~l~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGKNHAVKDVSMDFPE---NSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCCeeEEecceEEEcC---CCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 468999999999988899999999999 9999999999999999999999986 334555433210
Q ss_pred ------------h---cCCCCCHHHHHHHh----C---chHHHHHHHHHHHHhccc-------CccccccChhHhHHHHH
Q 025114 94 ------------Q---SVDGTSVAEIFKLY----G---EGFFREKETEVLQKLSLM-------RQLVVSTGGGAVTRPIN 144 (257)
Q Consensus 94 ------------~---~~~~~~v~e~~~~~----g---~~~~~~~~~~~l~~l~~~-------~~~v~~lsgG~~qr~~~ 144 (257)
+ .+...++.+.+... + .....+...++++.+++. ++.+..||||++||+.+
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l 159 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCI 159 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHH
Confidence 0 12235777766431 1 111223345667777753 26788999999999999
Q ss_pred HHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccce
Q 025114 145 WRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANAR 211 (257)
Q Consensus 145 a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~ 211 (257)
++++. +|++++||||+++| ++++.+ +.+++.++|+++.+..+| |++..+.+|++..++++++.
T Consensus 160 aral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~---d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 160 ARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQQAARVS---DYTAFFYMGDLVECGETKKI 234 (252)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHHHHHhhC---CEEEEEECCEEEEeCCHHHH
Confidence 98876 79999999999988 344443 578899999977766676 77767777766555554443
No 148
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.9e-28 Score=213.79 Aligned_cols=177 Identities=18% Similarity=0.193 Sum_probs=129.5
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---------CCceecchhhh----
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---------GYSFFDCDTLI---- 92 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---------g~~~~d~~~~~---- 92 (257)
..+|+++|+++.|+++.+|+|+||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 11 ~~~l~~~~l~~~~~~~~il~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGKFHALKNINLDIAK---NQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCCeEEeeceeEEEcC---CCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 4589999999999988899999999999 9999999999999999999999986 33445443321
Q ss_pred ------------hh--cCCCCCHHHHHHHh-----C--chHHHHHHHHHHHHhccc-------CccccccChhHhHHHHH
Q 025114 93 ------------EQ--SVDGTSVAEIFKLY-----G--EGFFREKETEVLQKLSLM-------RQLVVSTGGGAVTRPIN 144 (257)
Q Consensus 93 ------------~~--~~~~~~v~e~~~~~-----g--~~~~~~~~~~~l~~l~~~-------~~~v~~lsgG~~qr~~~ 144 (257)
.+ .....++.+.+... + .....++..++++.+++. ++.+..|||||+||+.+
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~l 167 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCI 167 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHH
Confidence 00 01135677665431 1 011223445677877752 36789999999999999
Q ss_pred HHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccc
Q 025114 145 WRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN 209 (257)
Q Consensus 145 a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~ 209 (257)
++++. +|++++||||+++| ++++. .+.+++.++|+++.+..+| |++..+.+|++..+++++
T Consensus 168 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~~~~~~~---d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 168 ARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQQAARCS---DYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhC---CEEEEEECCEEEEeCCHH
Confidence 98886 79999999999998 33443 3678899999976665565 676666666655444443
No 149
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.3e-28 Score=215.46 Aligned_cols=180 Identities=18% Similarity=0.174 Sum_probs=132.9
Q ss_pred eEEecceeeeeCc-----cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh------
Q 025114 28 VLESGNVHAPIDE-----AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI------ 92 (257)
Q Consensus 28 ~l~~~~l~~~~~~-----~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~------ 92 (257)
.|+++||++.|++ +++|+++||+|++ |++++|+||||||||||+++|+|++ |.+++++.++.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~---Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~ 78 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIED---GSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNK 78 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccc
Confidence 4899999999974 3699999999999 9999999999999999999999987 44555543211
Q ss_pred ------------hh----cCCCCCHHHHHHHh----C--chHHHHHHHHHHHHhccc----CccccccChhHhHHHHHHH
Q 025114 93 ------------EQ----SVDGTSVAEIFKLY----G--EGFFREKETEVLQKLSLM----RQLVVSTGGGAVTRPINWR 146 (257)
Q Consensus 93 ------------~~----~~~~~~v~e~~~~~----g--~~~~~~~~~~~l~~l~~~----~~~v~~lsgG~~qr~~~a~ 146 (257)
.+ .+...++.+.+... + .........++++.+++. ++.+..|||||+||+.+++
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~ 158 (280)
T PRK13649 79 DIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAG 158 (280)
T ss_pred CHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 01 01134666665431 1 111223345677887774 3678999999999999998
Q ss_pred Hhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceec
Q 025114 147 YMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVS 213 (257)
Q Consensus 147 ~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~ 213 (257)
++. +|.+++||||+++| +.++++.+.+++.++|+++.+..+| |++..|.+|++..+++++.++.
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~---d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 159 ILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYA---DFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhC---CEEEEEECCEEEEeCCHHHHhc
Confidence 776 79999999999998 3444445789999999977666666 7777777777666666555443
No 150
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.7e-28 Score=211.61 Aligned_cols=180 Identities=17% Similarity=0.200 Sum_probs=131.9
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---------CCceecchhhh----
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---------GYSFFDCDTLI---- 92 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---------g~~~~d~~~~~---- 92 (257)
.++|+++|+++.|+++.+|+++||+|.+ |++++|+||||||||||+++|+|++ |.+++++.++.
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~~s~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~ 79 (252)
T PRK14239 3 EPILQVSDLSVYYNKKKALNSVSLDFYP---NEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT 79 (252)
T ss_pred CceEEEEeeEEEECCeeeeeeeeEEEcC---CcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCccc
Confidence 3579999999999988899999999999 9999999999999999999999973 44555543321
Q ss_pred ------------hh--cCCCCCHHHHHHHh----Cc---hHHHHHHHHHHHHhcc-------cCccccccChhHhHHHHH
Q 025114 93 ------------EQ--SVDGTSVAEIFKLY----GE---GFFREKETEVLQKLSL-------MRQLVVSTGGGAVTRPIN 144 (257)
Q Consensus 93 ------------~~--~~~~~~v~e~~~~~----g~---~~~~~~~~~~l~~l~~-------~~~~v~~lsgG~~qr~~~ 144 (257)
.+ .....++.+.+... +. ........++++.+++ .++.+..||||++||+.+
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 159 (252)
T PRK14239 80 DTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCI 159 (252)
T ss_pred chHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHH
Confidence 00 01235777766532 11 1122334456777764 237789999999999999
Q ss_pred HHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 145 WRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 145 a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
++++. +|.+++||||+++| ++++.. +.+++.++|+++.+..+| |++..+.+|++..+++++++.
T Consensus 160 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~---d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 160 ARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQASRIS---DRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHHHHHHhC---CEEEEEECCEEEEeCCHHHHH
Confidence 98876 79999999999998 344432 578899999977666666 777777777666555554443
No 151
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.94 E-value=2.8e-27 Score=198.92 Aligned_cols=157 Identities=24% Similarity=0.224 Sum_probs=119.2
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh------hh----
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI------EQ---- 94 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~------~~---- 94 (257)
|+++||++.|+++.+|+++||+|++ |++++|+|+||||||||+++|+|++ |.+++++..+. ..
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAA---GEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEE
Confidence 4789999999998999999999999 9999999999999999999999987 44455543321 00
Q ss_pred ------cCCCCCHHHHHHHhCchHHHHHHHHHHHHhccc---CccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-
Q 025114 95 ------SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLM---RQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL- 163 (257)
Q Consensus 95 ------~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~---~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L- 163 (257)
.+...++.+.+.........+...++++.+++. ++.+..||||++|++.+++++. +|++++||||+++|
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD 157 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALD 157 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 112456777665432212234456778888875 3788999999999999998886 79999999999998
Q ss_pred ----------HHHHHhcCCCCccccCCCCCCchhh
Q 025114 164 ----------AQRIAAVGTDSRPLLHQCESGDAYT 188 (257)
Q Consensus 164 ----------~~rl~~~g~~~~~~~h~~~~~~~~~ 188 (257)
+.++...|.++++++|+......+|
T Consensus 158 ~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~ 192 (201)
T cd03231 158 KAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAG 192 (201)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhcc
Confidence 3444445778899999855444444
No 152
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5.1e-27 Score=201.52 Aligned_cols=153 Identities=24% Similarity=0.269 Sum_probs=117.7
Q ss_pred ceEEecceeeeeCc----cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh------
Q 025114 27 SVLESGNVHAPIDE----AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI------ 92 (257)
Q Consensus 27 ~~l~~~~l~~~~~~----~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~------ 92 (257)
++|+++||++.|++ +.+|+++||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~ 80 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGE---GEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAA 80 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcC---CcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHH
Confidence 57999999999974 5799999999999 9999999999999999999999987 44555553221
Q ss_pred ----h-h----------cCCCCCHHHHHHHh----C--chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHh
Q 025114 93 ----E-Q----------SVDGTSVAEIFKLY----G--EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYM 148 (257)
Q Consensus 93 ----~-~----------~~~~~~v~e~~~~~----g--~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l 148 (257)
. . .+...++.+.+... + ....+++..++++.+++.+ +.+..|||||+||+.+++++
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al 160 (233)
T PRK11629 81 KAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARAL 160 (233)
T ss_pred HHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 0 1 11245787776541 1 1122344567888888854 78899999999999999877
Q ss_pred h-CCcEEEEECCHHHH-----------HHHHHh-cCCCCccccCCCC
Q 025114 149 Q-KGISVWLDVPLEAL-----------AQRIAA-VGTDSRPLLHQCE 182 (257)
Q Consensus 149 ~-~~~vl~LDep~~~L-----------~~rl~~-~g~~~~~~~h~~~ 182 (257)
. +|++++||||+++| +++++. .|.+++.++|+++
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~ 207 (233)
T PRK11629 161 VNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ 207 (233)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 6 79999999999998 355543 4788999999954
No 153
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.94 E-value=1.4e-28 Score=223.51 Aligned_cols=172 Identities=17% Similarity=0.213 Sum_probs=136.1
Q ss_pred eeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh----------h-------
Q 025114 36 APIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE----------Q------- 94 (257)
Q Consensus 36 ~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~----------~------- 94 (257)
|.|+++.+|+|+||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++.. .
T Consensus 1 ~~~~~~~~l~~vs~~i~~---Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~ 77 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAK---GEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVF 77 (363)
T ss_pred CccCCceeEEeeEEEEcC---CCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEE
Confidence 568888999999999999 9999999999999999999999998 456666644321 0
Q ss_pred ----cCCCCCHHHHHHHh----Cc--hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECCH
Q 025114 95 ----SVDGTSVAEIFKLY----GE--GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPL 160 (257)
Q Consensus 95 ----~~~~~~v~e~~~~~----g~--~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~ 160 (257)
.+..+|+.+++... +. ....++..++++.+++.+ +.+.+|||||+||+.+++++. +|++++||||+
T Consensus 78 Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~ 157 (363)
T TIGR01186 78 QQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAF 157 (363)
T ss_pred CCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 12356888876542 21 122345567888888854 889999999999999998886 79999999999
Q ss_pred HHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceec
Q 025114 161 EAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVS 213 (257)
Q Consensus 161 ~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~ 213 (257)
++| +.++... +.+++.++||++++..+| |++..|.+|++...|++++++.
T Consensus 158 saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~---drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 158 SALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIG---DRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC---CEEEEEeCCEEEeeCCHHHHHh
Confidence 998 3455433 789999999988888887 8888888888877777766553
No 154
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.3e-28 Score=213.10 Aligned_cols=176 Identities=17% Similarity=0.153 Sum_probs=128.8
Q ss_pred CcceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---------CCceecchhhhh--
Q 025114 25 SASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---------GYSFFDCDTLIE-- 93 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---------g~~~~d~~~~~~-- 93 (257)
++++|+++||++.|+++.+|+|+||+|++ |++++|+|+||||||||+|+|+|++ |.+++++.++..
T Consensus 16 ~~~~l~~~nl~~~~~~~~il~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 16 TEIKMRARDVSVFYGEKQALFDVDLDIPE---KTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred CCceEEEEeEEEEECCEEEEEEEEEEEcC---CCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 55689999999999988899999999999 9999999999999999999999986 334555533210
Q ss_pred -------h-------c--CCCCCHHHHHHHh----C----chHHHHHHHHHHHHhccc-------CccccccChhHhHHH
Q 025114 94 -------Q-------S--VDGTSVAEIFKLY----G----EGFFREKETEVLQKLSLM-------RQLVVSTGGGAVTRP 142 (257)
Q Consensus 94 -------~-------~--~~~~~v~e~~~~~----g----~~~~~~~~~~~l~~l~~~-------~~~v~~lsgG~~qr~ 142 (257)
. . ....++.+.+... + .....+...++++.+++. ++.+..||||++||+
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv 172 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRL 172 (267)
T ss_pred cchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHH
Confidence 0 0 1123777766432 1 011123345677887773 257899999999999
Q ss_pred HHHHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhc
Q 025114 143 INWRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN 207 (257)
Q Consensus 143 ~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~ 207 (257)
.+++++. +|.+++||||+++| ++++.. +.+++.++|+++.+..+| |++..+.+|++...++
T Consensus 173 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~~~~~~---d~v~~l~~G~i~~~g~ 245 (267)
T PRK14235 173 CIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQAARVS---QRTAFFHLGNLVEVGD 245 (267)
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHHHHhhC---CEEEEEECCEEEEeCC
Confidence 9998886 79999999999998 344433 578899999977665665 6665665555443333
No 155
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.2e-28 Score=216.16 Aligned_cols=173 Identities=17% Similarity=0.209 Sum_probs=128.7
Q ss_pred EecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh------------
Q 025114 30 ESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------------ 93 (257)
Q Consensus 30 ~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------------ 93 (257)
.++|+++.|+++.+|+++||+|++ |++++|+||||||||||+|+|+|++ |.+++++..+..
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~---Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVRE---GEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 577999999999999999999999 9999999999999999999999997 445555533210
Q ss_pred ---------hcCCCCCHHHHHHHh----C--chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEE
Q 025114 94 ---------QSVDGTSVAEIFKLY----G--EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISV 154 (257)
Q Consensus 94 ---------~~~~~~~v~e~~~~~----g--~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl 154 (257)
..+...++.+.+... + .....+...++++.+++.+ +.+..|||||+||+.+++++. +|+++
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~il 182 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDIL 182 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 011245777776542 1 1112234457788888753 788999999999999998876 79999
Q ss_pred EEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcc
Q 025114 155 WLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANA 208 (257)
Q Consensus 155 ~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~ 208 (257)
+||||+++| +.++... |.+++.++|+++.+..+| |++..|.+|++...+++
T Consensus 183 lLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~---d~v~~l~~G~i~~~g~~ 245 (269)
T cd03294 183 LMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLG---DRIAIMKDGRLVQVGTP 245 (269)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc---CEEEEEECCEEEEeCCH
Confidence 999999998 3445433 788999999976665565 66656666655433433
No 156
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.94 E-value=9.3e-28 Score=205.29 Aligned_cols=155 Identities=23% Similarity=0.289 Sum_probs=117.3
Q ss_pred CcceEEecceeeeeCc----cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh----
Q 025114 25 SASVLESGNVHAPIDE----AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI---- 92 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~----~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~---- 92 (257)
.+++|+++||++.|++ ..+|+++||+|.+ |++++|+||||||||||+++|+|++ |.+++++..+.
T Consensus 3 ~~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~---Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~ 79 (228)
T PRK10584 3 AENIVEVHHLKKSVGQGEHELSILTGVELVVKR---GETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDE 79 (228)
T ss_pred cCceEEEeeeEEEccCCCcceEEEeccEEEEcC---CCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCH
Confidence 3467999999999975 3599999999999 9999999999999999999999997 44555543221
Q ss_pred -------hh----------cCCCCCHHHHHHHh----Cc--hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHH
Q 025114 93 -------EQ----------SVDGTSVAEIFKLY----GE--GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWR 146 (257)
Q Consensus 93 -------~~----------~~~~~~v~e~~~~~----g~--~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~ 146 (257)
.. .+...++.+.+... +. ...+++..++++.+++.+ +.+..||||++||+.+++
T Consensus 80 ~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~ 159 (228)
T PRK10584 80 EARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALAR 159 (228)
T ss_pred HHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHH
Confidence 00 11235777765431 11 112334567788888754 788999999999999998
Q ss_pred Hhh-CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCC
Q 025114 147 YMQ-KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCE 182 (257)
Q Consensus 147 ~l~-~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~ 182 (257)
++. +|++++||||+++| +++++.. |.+++.++|+++
T Consensus 160 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 208 (228)
T PRK10584 160 AFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ 208 (228)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 876 79999999999988 3454433 778999999954
No 157
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.94 E-value=1.7e-28 Score=209.74 Aligned_cols=157 Identities=20% Similarity=0.117 Sum_probs=119.3
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-----hcCCCC
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE-----QSVDGT 99 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~-----~~~~~~ 99 (257)
+.+++++++|+++++|+++||+|++ |++++|+||||||||||+++|+|++ |.+++++..... ......
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 99 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPR---GERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPEL 99 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCC
Confidence 7899999999999999999999999 9999999999999999999999987 445666543211 112346
Q ss_pred CHHHHHHHh----C--chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH------
Q 025114 100 SVAEIFKLY----G--EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL------ 163 (257)
Q Consensus 100 ~v~e~~~~~----g--~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L------ 163 (257)
|+.+++... + ....++...++++.+++.+ +.+..||||++||+.+++++. +|++++||||+++|
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~ 179 (224)
T cd03220 100 TGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQE 179 (224)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 777766432 1 1122334456777777654 788999999999999998876 79999999999988
Q ss_pred -----HHHHHhcCCCCccccCCCCCCchhh
Q 025114 164 -----AQRIAAVGTDSRPLLHQCESGDAYT 188 (257)
Q Consensus 164 -----~~rl~~~g~~~~~~~h~~~~~~~~~ 188 (257)
+.++.+.+.+++.++|+.+.+..+|
T Consensus 180 ~~~~~l~~~~~~~~tiii~sH~~~~~~~~~ 209 (224)
T cd03220 180 KCQRRLRELLKQGKTVILVSHDPSSIKRLC 209 (224)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 2344444678999999965544444
No 158
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.8e-28 Score=212.50 Aligned_cols=178 Identities=16% Similarity=0.174 Sum_probs=129.7
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---------CCceecchhhh----
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---------GYSFFDCDTLI---- 92 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---------g~~~~d~~~~~---- 92 (257)
+++|+++|+++.|+++.+|+++||+|++ |++++|+|+||||||||+++|+|++ |.+++++.++.
T Consensus 10 ~~~l~i~~l~~~~~~~~~l~~vs~~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~ 86 (259)
T PRK14274 10 QEVYQINGMNLWYGQHHALKNINLSIPE---NEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86 (259)
T ss_pred CceEEEeeEEEEECCeeeEEeeEEEEcC---CCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccccc
Confidence 4589999999999988899999999999 9999999999999999999999976 34455543321
Q ss_pred -----hh---------cCCCCCHHHHHHHhCc-------hHHHHHHHHHHHHhccc-------CccccccChhHhHHHHH
Q 025114 93 -----EQ---------SVDGTSVAEIFKLYGE-------GFFREKETEVLQKLSLM-------RQLVVSTGGGAVTRPIN 144 (257)
Q Consensus 93 -----~~---------~~~~~~v~e~~~~~g~-------~~~~~~~~~~l~~l~~~-------~~~v~~lsgG~~qr~~~ 144 (257)
.. .....++.+.+..... ....+...++++.+++. ++.+..|||||+||+.+
T Consensus 87 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~l 166 (259)
T PRK14274 87 DLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCI 166 (259)
T ss_pred CHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHH
Confidence 00 0112367776543211 11122344567777652 36788999999999999
Q ss_pred HHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccc
Q 025114 145 WRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANA 210 (257)
Q Consensus 145 a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~ 210 (257)
++++. +|++++||||+++| +.++.+ +.+++.++|+++.+..+| |++..|.+|++...|++++
T Consensus 167 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~---d~i~~l~~G~i~~~g~~~~ 240 (259)
T PRK14274 167 ARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQAARVS---DQTAFFYMGELVECNDTNK 240 (259)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhC---CEEEEEECCEEEEECCHHH
Confidence 98876 79999999999998 344433 678899999977666666 7776666666554444443
No 159
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3e-28 Score=212.27 Aligned_cols=178 Identities=17% Similarity=0.154 Sum_probs=130.2
Q ss_pred CcceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC---------Cceecchhhh---
Q 025114 25 SASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG---------YSFFDCDTLI--- 92 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg---------~~~~d~~~~~--- 92 (257)
.+++|+++|+++.|+++.+|+|+||+|++ |++++|+|+||||||||+++|+|++. .+++++..+.
T Consensus 9 ~~~~l~~~~l~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 85 (258)
T PRK14268 9 AQPQIKVENLNLWYGEKQALKNVSMQIPK---NSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPD 85 (258)
T ss_pred cceeEEEeeeEEEeCCeeeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccccc
Confidence 35689999999999988899999999999 99999999999999999999999753 3344443221
Q ss_pred ------hh---------cCCCCCHHHHHHHh----Cc--hHHHHHHHHHHHHhccc-------CccccccChhHhHHHHH
Q 025114 93 ------EQ---------SVDGTSVAEIFKLY----GE--GFFREKETEVLQKLSLM-------RQLVVSTGGGAVTRPIN 144 (257)
Q Consensus 93 ------~~---------~~~~~~v~e~~~~~----g~--~~~~~~~~~~l~~l~~~-------~~~v~~lsgG~~qr~~~ 144 (257)
.. .....++.+.+... +. ...+....++++.+++. ++.+..||||++||+.+
T Consensus 86 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~l 165 (258)
T PRK14268 86 VDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCI 165 (258)
T ss_pred chHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHH
Confidence 00 01135676665432 11 11122345677777652 36789999999999999
Q ss_pred HHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccc
Q 025114 145 WRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN 209 (257)
Q Consensus 145 a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~ 209 (257)
++++. +|++++||||+++| ++++. .+.+++.++|+++.+..+| |++..|.+|++...++++
T Consensus 166 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~~~tiiivsH~~~~~~~~~---d~i~~l~~G~i~~~~~~~ 238 (258)
T PRK14268 166 ARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK-KDYTIVIVTHNMQQAARIS---DYTGFFLMGELIEFGQTR 238 (258)
T ss_pred HHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-hCCEEEEEECCHHHHHHhC---CEEEEEECCEEEEeCCHH
Confidence 98886 79999999999998 34443 3678899999977666666 777667666654444443
No 160
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.94 E-value=5.5e-28 Score=211.82 Aligned_cols=181 Identities=19% Similarity=0.254 Sum_probs=133.2
Q ss_pred cceEEecceeeeeC---------ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh
Q 025114 26 ASVLESGNVHAPID---------EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI 92 (257)
Q Consensus 26 ~~~l~~~~l~~~~~---------~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~ 92 (257)
|++|+++||++.|+ ++.+|+|+||+|.+ |++++|+||||||||||+++|+|++ |.+.+++..+.
T Consensus 1 ~~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~ 77 (268)
T PRK10419 1 MTLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKS---GETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLA 77 (268)
T ss_pred CceEEEeceEEEecCCccccccCceeeEeceeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecc
Confidence 45799999999997 47899999999999 9999999999999999999999987 44555554321
Q ss_pred h-----------------h-----cCCCCCHHHHHHHh-----C--chHHHHHHHHHHHHhccc----CccccccChhHh
Q 025114 93 E-----------------Q-----SVDGTSVAEIFKLY-----G--EGFFREKETEVLQKLSLM----RQLVVSTGGGAV 139 (257)
Q Consensus 93 ~-----------------~-----~~~~~~v~e~~~~~-----g--~~~~~~~~~~~l~~l~~~----~~~v~~lsgG~~ 139 (257)
. + .....++.+++... + .........++++.+++. ++.+..||||++
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~ 157 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQL 157 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHH
Confidence 0 0 01124555554321 1 111223456778888774 278899999999
Q ss_pred HHHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHh
Q 025114 140 TRPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYA 206 (257)
Q Consensus 140 qr~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~ 206 (257)
||+.+++++. +|++++||||+++| ++++.+. +.+++.++|+++.+..+| |++..|.+|++...+
T Consensus 158 qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~---d~i~~l~~G~i~~~g 234 (268)
T PRK10419 158 QRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFC---QRVMVMDNGQIVETQ 234 (268)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhC---CEEEEEECCEEeeeC
Confidence 9999998876 79999999999988 3444433 788999999977666666 777677777766666
Q ss_pred ccccee
Q 025114 207 NANARV 212 (257)
Q Consensus 207 ~~~~~~ 212 (257)
++++..
T Consensus 235 ~~~~~~ 240 (268)
T PRK10419 235 PVGDKL 240 (268)
T ss_pred Chhhcc
Confidence 655443
No 161
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.9e-28 Score=206.05 Aligned_cols=155 Identities=21% Similarity=0.221 Sum_probs=116.3
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh------------
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI------------ 92 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~------------ 92 (257)
|+++|+++.|+++++|+++||++++ | +++|+||||||||||+++|+|++ |.+++++.++.
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~---g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGP---G-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcC---C-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEE
Confidence 4789999999988899999999999 9 99999999999999999999987 44555553221
Q ss_pred -hh---cCCCCCHHHHHHHhC----c--hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEEC
Q 025114 93 -EQ---SVDGTSVAEIFKLYG----E--GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDV 158 (257)
Q Consensus 93 -~~---~~~~~~v~e~~~~~g----~--~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDe 158 (257)
.+ .+.+.++.+.+.... . ....+...++++.+++.+ +.+..|||||+||+.+++++. +|++++|||
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 156 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDE 156 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 01 122457777665321 1 111233456788888753 788999999999999998876 799999999
Q ss_pred CHHHH-----------HHHHHhcCCCCccccCCCCCCchhh
Q 025114 159 PLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYT 188 (257)
Q Consensus 159 p~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~ 188 (257)
|+++| ++++++ +.+++.++|+++.+..+|
T Consensus 157 Pt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~ 196 (211)
T cd03264 157 PTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVEDVESLC 196 (211)
T ss_pred CcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhC
Confidence 99998 344443 578899999965444444
No 162
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.5e-28 Score=212.99 Aligned_cols=179 Identities=20% Similarity=0.228 Sum_probs=129.1
Q ss_pred CcceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---------CCceecchhhhh--
Q 025114 25 SASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---------GYSFFDCDTLIE-- 93 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---------g~~~~d~~~~~~-- 93 (257)
..++|+++|+++.|+++.+|+++||+|.+ |++++|+|+||||||||+|+|+|++ |.+++++.++..
T Consensus 18 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 94 (268)
T PRK14248 18 KEHILEVKDLSIYYGEKRAVNDISMDIEK---HAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN 94 (268)
T ss_pred CCceEEEEEEEEEeCCceeeeceEEEEcC---CCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc
Confidence 34689999999999988999999999999 9999999999999999999999964 444555433210
Q ss_pred -------h-------c--CCCCCHHHHHHHh----Cc---hHHHHHHHHHHHHhccc-------CccccccChhHhHHHH
Q 025114 94 -------Q-------S--VDGTSVAEIFKLY----GE---GFFREKETEVLQKLSLM-------RQLVVSTGGGAVTRPI 143 (257)
Q Consensus 94 -------~-------~--~~~~~v~e~~~~~----g~---~~~~~~~~~~l~~l~~~-------~~~v~~lsgG~~qr~~ 143 (257)
. . ....++.+++... +. ....+...++++.+++. ++.+..||||++||+.
T Consensus 95 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~ 174 (268)
T PRK14248 95 INVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLC 174 (268)
T ss_pred ccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHH
Confidence 0 0 1123666665431 11 11123344566666652 3778999999999999
Q ss_pred HHHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccc
Q 025114 144 NWRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANA 210 (257)
Q Consensus 144 ~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~ 210 (257)
+++++. +|++++||||+++| ++++.. +.+++.++|+++.+..+| |++..|.+|++..+++++.
T Consensus 175 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~---d~v~~l~~G~i~~~~~~~~ 249 (268)
T PRK14248 175 IARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQQALRVS---DRTAFFLNGDLVEYDQTEQ 249 (268)
T ss_pred HHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHHHHHHhC---CEEEEEECCEEEEeCCHHH
Confidence 998876 79999999999998 344433 578899999977666666 7776666666554444433
No 163
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.94 E-value=9.1e-27 Score=196.63 Aligned_cols=153 Identities=22% Similarity=0.197 Sum_probs=117.4
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh----h------
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI----E------ 93 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~----~------ 93 (257)
+|+++|+++.|+++.+|+++||+|++ |++++|+|+||||||||+++|+|++ |.+.+++.++. .
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAA---GEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYL 78 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEe
Confidence 69999999999988899999999999 9999999999999999999999986 55556553310 0
Q ss_pred --h--cCCCCCHHHHHHHhCc--hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH
Q 025114 94 --Q--SVDGTSVAEIFKLYGE--GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL 163 (257)
Q Consensus 94 --~--~~~~~~v~e~~~~~g~--~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L 163 (257)
. .+...++.+.+..... ........++++.+++.+ +++..||||++||+.+++++. +|++++||||+++|
T Consensus 79 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 158 (207)
T PRK13539 79 GHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAAL 158 (207)
T ss_pred cCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 0 0124567776543211 011233567788888753 678899999999999998876 79999999999988
Q ss_pred -----------HHHHHhcCCCCccccCCCCC
Q 025114 164 -----------AQRIAAVGTDSRPLLHQCES 183 (257)
Q Consensus 164 -----------~~rl~~~g~~~~~~~h~~~~ 183 (257)
++++...|.+++.++|+++.
T Consensus 159 D~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 189 (207)
T PRK13539 159 DAAAVALFAELIRAHLAQGGIVIAATHIPLG 189 (207)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCchh
Confidence 34444457889999999543
No 164
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=5.1e-28 Score=210.16 Aligned_cols=178 Identities=17% Similarity=0.207 Sum_probs=129.3
Q ss_pred CcceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---------CCceecchhhhh--
Q 025114 25 SASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---------GYSFFDCDTLIE-- 93 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---------g~~~~d~~~~~~-- 93 (257)
+.++|+++|+++.|+++.+|+|+||+|.+ |++++|+||||||||||+++|+|++ |.+.+++.++..
T Consensus 3 ~~~~i~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 79 (253)
T PRK14261 3 MEIILSTKNLNLWYGEKHALYDITISIPK---NRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSG 79 (253)
T ss_pred ccceEEEeeeEEEECCeeeeeeeEEEECC---CcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccc
Confidence 55689999999999988999999999999 9999999999999999999999975 334444432210
Q ss_pred --------------h--cCCCCCHHHHHHHh----Cc---hHHHHHHHHHHHHhccc-------CccccccChhHhHHHH
Q 025114 94 --------------Q--SVDGTSVAEIFKLY----GE---GFFREKETEVLQKLSLM-------RQLVVSTGGGAVTRPI 143 (257)
Q Consensus 94 --------------~--~~~~~~v~e~~~~~----g~---~~~~~~~~~~l~~l~~~-------~~~v~~lsgG~~qr~~ 143 (257)
+ .+...++.+.+... +. ...+....++++.+++. ++.+..||||++||+.
T Consensus 80 ~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 159 (253)
T PRK14261 80 ADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLC 159 (253)
T ss_pred cchhhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHH
Confidence 0 01123676665432 10 11122334566666552 3788999999999999
Q ss_pred HHHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccc
Q 025114 144 NWRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN 209 (257)
Q Consensus 144 ~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~ 209 (257)
+++++. +|++++||||+++| ++++.+ +.+++.++|+++.+..+| |++..|.+|++...++++
T Consensus 160 laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~~~~~~---d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14261 160 IARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQAARVS---DYTGFMYLGKLIEFDKTT 233 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHHHHhhC---CEEEEEECCEEEEcCCHH
Confidence 998876 79999999999998 344443 578899999977666666 777666666655444443
No 165
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.2e-28 Score=210.24 Aligned_cols=178 Identities=16% Similarity=0.156 Sum_probs=129.5
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---------CCceecchhhh-----
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---------GYSFFDCDTLI----- 92 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---------g~~~~d~~~~~----- 92 (257)
.+|+++|+++.|+++.+|+++||+|.+ |++++|+||||||||||+++|+|++ |.+.+++.++.
T Consensus 3 ~~l~i~~v~~~~~~~~~l~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~ 79 (258)
T PRK14241 3 KRIDVKDLNIYYGSFHAVEDVNLNIEP---RSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVD 79 (258)
T ss_pred ccEEEeeEEEEECCEeeeeeeeEEEcC---CcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccC
Confidence 369999999999988899999999999 9999999999999999999999986 33445443221
Q ss_pred -----------hh---cCCCCCHHHHHHHh----Cc---hHHHHHHHHHHHHhccc-------CccccccChhHhHHHHH
Q 025114 93 -----------EQ---SVDGTSVAEIFKLY----GE---GFFREKETEVLQKLSLM-------RQLVVSTGGGAVTRPIN 144 (257)
Q Consensus 93 -----------~~---~~~~~~v~e~~~~~----g~---~~~~~~~~~~l~~l~~~-------~~~v~~lsgG~~qr~~~ 144 (257)
.+ .+...++.+.+... +. ...++...++++.+++. ++.+.+||||++||+.+
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 159 (258)
T PRK14241 80 PVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCI 159 (258)
T ss_pred hHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHH
Confidence 00 11235777765431 11 11223345677777652 37789999999999999
Q ss_pred HHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHH------HHHHHHHh
Q 025114 145 WRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLW------EERGEAYA 206 (257)
Q Consensus 145 a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~------~~r~~~y~ 206 (257)
++++. +|++++||||+++| +++++ .+.+++.++|+++.+..+| |++..+. +|++..++
T Consensus 160 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tviivsH~~~~~~~~~---d~i~~l~~~~~~~~g~i~~~~ 235 (258)
T PRK14241 160 ARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK-QDYTIVIVTHNMQQAARVS---DQTAFFNLEATGKPGRLVEID 235 (258)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhC---CEEEEEecccCCCCceEEecC
Confidence 98886 79999999999998 34443 3578899999977666666 7765554 46555555
Q ss_pred cccce
Q 025114 207 NANAR 211 (257)
Q Consensus 207 ~~~~~ 211 (257)
+++++
T Consensus 236 ~~~~~ 240 (258)
T PRK14241 236 DTEKI 240 (258)
T ss_pred CHHHH
Confidence 54433
No 166
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.94 E-value=6.1e-28 Score=210.30 Aligned_cols=178 Identities=21% Similarity=0.227 Sum_probs=129.6
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchh-----hhh---
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDT-----LIE--- 93 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~-----~~~--- 93 (257)
.++|+++|+++.|+++.+|+++||+|.+ |++++|+|+||||||||+|+|+|++ |.+++++.+ +..
T Consensus 4 ~~~l~~~~l~~~~~~~~il~~is~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~ 80 (258)
T PRK11701 4 QPLLSVRGLTKLYGPRKGCRDVSFDLYP---GEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSE 80 (258)
T ss_pred CceEEEeeeEEEcCCceeeeeeeEEEeC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCH
Confidence 3579999999999988899999999999 9999999999999999999999987 445666543 210
Q ss_pred ---------------hc-----CCCCCHHHHHHH----hCc---hHHHHHHHHHHHHhccc----CccccccChhHhHHH
Q 025114 94 ---------------QS-----VDGTSVAEIFKL----YGE---GFFREKETEVLQKLSLM----RQLVVSTGGGAVTRP 142 (257)
Q Consensus 94 ---------------~~-----~~~~~v~e~~~~----~g~---~~~~~~~~~~l~~l~~~----~~~v~~lsgG~~qr~ 142 (257)
+. ....++.+.+.. .+. ...+....++++.+++. ++.+..|||||+||+
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl 160 (258)
T PRK11701 81 AERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRL 160 (258)
T ss_pred HHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHH
Confidence 00 011233333221 111 11223445778888874 277899999999999
Q ss_pred HHHHHhh-CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccc
Q 025114 143 INWRYMQ-KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN 209 (257)
Q Consensus 143 ~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~ 209 (257)
.+++++. +|++++||||+++| ++++... |.+++.++|+.+.+..+| |++..+.+|++...++++
T Consensus 161 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~---d~i~~l~~g~i~~~~~~~ 237 (258)
T PRK11701 161 QIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLA---HRLLVMKQGRVVESGLTD 237 (258)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhc---CEEEEEECCEEEEeCCHH
Confidence 9998876 79999999999998 3444433 789999999977666666 777666666655444443
No 167
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.1e-27 Score=209.89 Aligned_cols=181 Identities=17% Similarity=0.217 Sum_probs=133.7
Q ss_pred cceEEecceeeeeCc--cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh------
Q 025114 26 ASVLESGNVHAPIDE--AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------ 93 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~--~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------ 93 (257)
.++|+++|+++.|++ +.+|+|+||+|++ |++++|+||||||||||+++|+|++ |.+++++..+..
T Consensus 5 ~~~l~i~~l~~~~~~~~~~~l~~isl~i~~---Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~ 81 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPK---GQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKL 81 (269)
T ss_pred CceEEEEEEEEEcCCCCCcceeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 468999999999975 4599999999999 9999999999999999999999987 445555533210
Q ss_pred --------h----cCCCCCHHHHHHHh----C--chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CC
Q 025114 94 --------Q----SVDGTSVAEIFKLY----G--EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KG 151 (257)
Q Consensus 94 --------~----~~~~~~v~e~~~~~----g--~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~ 151 (257)
+ .+.+.++.+.+... + .....+...++++.+++.+ +.+..||||++|++.+++++. +|
T Consensus 82 ~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 161 (269)
T PRK13648 82 RKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNP 161 (269)
T ss_pred HhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 0 11233444433221 1 1112234456788888754 788999999999999998876 79
Q ss_pred cEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceec
Q 025114 152 ISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVS 213 (257)
Q Consensus 152 ~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~ 213 (257)
++++||||+++| ++++... |.+++.++|+++.+.. | |++..|.+|++...++++++..
T Consensus 162 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~---d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 162 SVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-A---DHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-C---CEEEEEECCEEEEecCHHHHhc
Confidence 999999999998 3444433 7899999999876653 6 8887888888776666655544
No 168
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=7.4e-28 Score=211.66 Aligned_cols=181 Identities=16% Similarity=0.164 Sum_probs=130.6
Q ss_pred CcceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---------CCceecchhhh---
Q 025114 25 SASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---------GYSFFDCDTLI--- 92 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---------g~~~~d~~~~~--- 92 (257)
+.++|+++|+++.|+++.+|+++||+|++ |++++|+|+||||||||+++|+|++ |.+.+++.++.
T Consensus 17 ~~~~l~~~nl~~~~~~~~~l~~vs~~i~~---Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~ 93 (274)
T PRK14265 17 DHSVFEVEGVKVFYGGFLALVDVHLKIPA---KKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93 (274)
T ss_pred CCceEEEeeEEEEeCCeEEEeeeeeEEcC---CCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccccc
Confidence 56689999999999988899999999999 9999999999999999999999985 33445543321
Q ss_pred -------------hhc--CCCCCHHHHHHHhCc-----hHHHHHHHHHHHHhcc-------cCccccccChhHhHHHHHH
Q 025114 93 -------------EQS--VDGTSVAEIFKLYGE-----GFFREKETEVLQKLSL-------MRQLVVSTGGGAVTRPINW 145 (257)
Q Consensus 93 -------------~~~--~~~~~v~e~~~~~g~-----~~~~~~~~~~l~~l~~-------~~~~v~~lsgG~~qr~~~a 145 (257)
.+. ....++.+.+..... ....+...++++.+++ .++.+..||||++||+.++
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA 173 (274)
T PRK14265 94 INSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIA 173 (274)
T ss_pred chhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHH
Confidence 000 112366665543210 0111222345555554 2367899999999999999
Q ss_pred HHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHH---------HHHHHH
Q 025114 146 RYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLW---------EERGEA 204 (257)
Q Consensus 146 ~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~---------~~r~~~ 204 (257)
+++. +|++++||||+++| +.++.+ +.+++.++|+++.+..+| |++..|. +|++..
T Consensus 174 raL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~~---d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 174 RAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQQASRVA---DWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhC---CEEEEEecccccccccCceEEE
Confidence 8876 79999999999998 344433 578899999987777776 7776665 566666
Q ss_pred Hhccccee
Q 025114 205 YANANARV 212 (257)
Q Consensus 205 y~~~~~~~ 212 (257)
+++++++.
T Consensus 250 ~g~~~~~~ 257 (274)
T PRK14265 250 FSPTEQMF 257 (274)
T ss_pred eCCHHHHH
Confidence 66655444
No 169
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.94 E-value=6.8e-28 Score=228.33 Aligned_cols=178 Identities=25% Similarity=0.303 Sum_probs=136.6
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC------Cceecchhhh---------
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG------YSFFDCDTLI--------- 92 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg------~~~~d~~~~~--------- 92 (257)
+|+++|+++.|+++++|+++||++++ |++++|+||||||||||+|+|+|++. .+++++.++.
T Consensus 1 ~l~i~~l~~~~~~~~il~~isl~i~~---Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (500)
T TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRP---GECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTER 77 (500)
T ss_pred CEEEEeEEEEeCCeEeecceEEEEeC---CcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence 47899999999988899999999999 99999999999999999999999874 2344442210
Q ss_pred ------hh---cCCCCCHHHHHHHhCc----------hHHHHHHHHHHHHhcccC----ccccccChhHhHHHHHHHHhh
Q 025114 93 ------EQ---SVDGTSVAEIFKLYGE----------GFFREKETEVLQKLSLMR----QLVVSTGGGAVTRPINWRYMQ 149 (257)
Q Consensus 93 ------~~---~~~~~~v~e~~~~~g~----------~~~~~~~~~~l~~l~~~~----~~v~~lsgG~~qr~~~a~~l~ 149 (257)
.+ .+...++.+.+..... .....+..++++.+++.+ +.+..|||||+||+.+|+++.
T Consensus 78 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~ 157 (500)
T TIGR02633 78 AGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALN 157 (500)
T ss_pred CCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHh
Confidence 01 1134677776653210 112234567888888753 568999999999999998876
Q ss_pred -CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccce
Q 025114 150 -KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANAR 211 (257)
Q Consensus 150 -~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~ 211 (257)
+|++++||||+++| +++++..|.+++.++||++.+..+| |++..|.+|++..+++++.+
T Consensus 158 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~---d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 158 KQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVC---DTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhC---CEEEEEeCCeEeeecCcccC
Confidence 79999999999998 4556556889999999988777777 88888888887766665543
No 170
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.94 E-value=8.4e-28 Score=233.04 Aligned_cols=182 Identities=16% Similarity=0.156 Sum_probs=140.7
Q ss_pred CcceEEecceeeeeC----ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC----Cceecchh------
Q 025114 25 SASVLESGNVHAPID----EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG----YSFFDCDT------ 90 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~----~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg----~~~~d~~~------ 90 (257)
.+++|+++|+++.|+ +.++|+||||+|.+ |++++|+|+||||||||+|+|+|++. .+.+++..
T Consensus 9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~---Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~ 85 (623)
T PRK10261 9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQR---GETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSR 85 (623)
T ss_pred CCceEEEeceEEEecCCCCceeEEEeeEEEECC---CCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccc
Confidence 456899999999996 35799999999999 99999999999999999999999973 33443310
Q ss_pred ---------------h-------hhh-----cCCCCCHHHHHHHh-----C--chHHHHHHHHHHHHhccc------Ccc
Q 025114 91 ---------------L-------IEQ-----SVDGTSVAEIFKLY-----G--EGFFREKETEVLQKLSLM------RQL 130 (257)
Q Consensus 91 ---------------~-------~~~-----~~~~~~v~e~~~~~-----g--~~~~~~~~~~~l~~l~~~------~~~ 130 (257)
. +.+ ....+++.+.+... + ....+++..++++.+++. +++
T Consensus 86 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 165 (623)
T PRK10261 86 QVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRY 165 (623)
T ss_pred cccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCC
Confidence 0 001 11235777766431 1 111234556788999984 378
Q ss_pred ccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHH
Q 025114 131 VVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTL 197 (257)
Q Consensus 131 v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l 197 (257)
+.+|||||+||+.+|+++. +|++++|||||++| ++++.+. |.+++.++||++.+..+| |++..|
T Consensus 166 ~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~a---dri~vl 242 (623)
T PRK10261 166 PHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIA---DRVLVM 242 (623)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhC---CEEEEe
Confidence 9999999999999998876 79999999999998 4666544 889999999988888888 899899
Q ss_pred HHHHHHHHhccccee
Q 025114 198 WEERGEAYANANARV 212 (257)
Q Consensus 198 ~~~r~~~y~~~~~~~ 212 (257)
.+|++...|+++.++
T Consensus 243 ~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 243 YQGEAVETGSVEQIF 257 (623)
T ss_pred eCCeecccCCHHHhh
Confidence 999888777665554
No 171
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=5.2e-28 Score=209.54 Aligned_cols=177 Identities=17% Similarity=0.148 Sum_probs=128.2
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC---------Cceecchhhh----
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG---------YSFFDCDTLI---- 92 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg---------~~~~d~~~~~---- 92 (257)
|++|+++|+++.|+++.+|+++||+|++ |++++|+||||||||||+++|+|++. ...+++.++.
T Consensus 1 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 77 (249)
T PRK14253 1 MNKFNIENLDLFYGENQALKSINLPIPA---RQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID 77 (249)
T ss_pred CCeEEEeccEEEECCeeeeecceEEecC---CCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccc
Confidence 4579999999999988999999999999 99999999999999999999999863 2344442221
Q ss_pred ----hh---------cCCCCCHHHHHHHh----Cc---hHHHHHHHHHHHHhccc-------CccccccChhHhHHHHHH
Q 025114 93 ----EQ---------SVDGTSVAEIFKLY----GE---GFFREKETEVLQKLSLM-------RQLVVSTGGGAVTRPINW 145 (257)
Q Consensus 93 ----~~---------~~~~~~v~e~~~~~----g~---~~~~~~~~~~l~~l~~~-------~~~v~~lsgG~~qr~~~a 145 (257)
.. .....++.+.+... +. ....+...++++.+++. ++.+..||||++||+.++
T Consensus 78 ~~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 157 (249)
T PRK14253 78 VADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIA 157 (249)
T ss_pred hHHHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHH
Confidence 00 01134676665431 10 11122334556666542 367889999999999999
Q ss_pred HHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccc
Q 025114 146 RYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN 209 (257)
Q Consensus 146 ~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~ 209 (257)
+++. +|++++||||+++| ++++.+ +.+++.++|+++.+..+| |++..|.+|++...++++
T Consensus 158 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~~---d~i~~l~~G~i~~~g~~~ 229 (249)
T PRK14253 158 RTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQQARRIS---DRTAFFLMGELVEHDDTQ 229 (249)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhC---CEEEEEECCEEEEeCCHH
Confidence 8886 79999999999988 344443 578999999977666666 777677777655444433
No 172
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=5.1e-28 Score=209.71 Aligned_cols=177 Identities=18% Similarity=0.193 Sum_probs=127.9
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC---------Cceecchhhh----
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG---------YSFFDCDTLI---- 92 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg---------~~~~d~~~~~---- 92 (257)
|++|+++|+++.|+++.+|+++||+|++ |++++|+|+||||||||+++|+|++. .+++++.++.
T Consensus 1 ~~~l~~~~l~~~~~~~~~l~~i~~~i~~---Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~ 77 (250)
T PRK14262 1 EPIIEIENFSAYYGEKKAVKNVTMKIFK---NQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL 77 (250)
T ss_pred CceEEEEeeEEEeCCceeEeeeeEeecC---CCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchh
Confidence 3579999999999988899999999999 99999999999999999999999763 3355543221
Q ss_pred -----hh---------cCCCCCHHHHHHHh----Cc---hHHHHHHHHHHHHhccc-------CccccccChhHhHHHHH
Q 025114 93 -----EQ---------SVDGTSVAEIFKLY----GE---GFFREKETEVLQKLSLM-------RQLVVSTGGGAVTRPIN 144 (257)
Q Consensus 93 -----~~---------~~~~~~v~e~~~~~----g~---~~~~~~~~~~l~~l~~~-------~~~v~~lsgG~~qr~~~ 144 (257)
.. .....++.+.+... +. ...++...++++.+++. ++.+..|||||+||+.+
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~l 157 (250)
T PRK14262 78 DVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCI 157 (250)
T ss_pred hHHHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHH
Confidence 00 01135666665431 11 01122234566766652 37889999999999999
Q ss_pred HHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccc
Q 025114 145 WRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN 209 (257)
Q Consensus 145 a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~ 209 (257)
++++. +|++++||||+++| +.++.+ +.+++.++|+++.+..+| |++..+.+|++..+++++
T Consensus 158 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~~~~~~~---d~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14262 158 ARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIGQAIRIA---DYIAFMYRGELIEYGPTR 230 (250)
T ss_pred HHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHhC---CEEEEEECCEEEEecCHH
Confidence 98876 79999999999998 344433 678899999976665665 676666666655444433
No 173
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.94 E-value=5.3e-28 Score=211.83 Aligned_cols=174 Identities=17% Similarity=0.200 Sum_probs=125.4
Q ss_pred ceEEecceeeeeCc---------cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh-
Q 025114 27 SVLESGNVHAPIDE---------AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI- 92 (257)
Q Consensus 27 ~~l~~~~l~~~~~~---------~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~- 92 (257)
++|+++||++.|++ +++|+++||+|++ |++++|+||||||||||+++|+|++ |.+.+++.++.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~---Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 79 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLRE---GQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHF 79 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecC---CCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCC
Confidence 57999999999962 4699999999999 9999999999999999999999998 44555543221
Q ss_pred -------------hhc-----CCCCCHHHHHHHh-----C--chHHHHHHHHHHHHhccc-C---ccccccChhHhHHHH
Q 025114 93 -------------EQS-----VDGTSVAEIFKLY-----G--EGFFREKETEVLQKLSLM-R---QLVVSTGGGAVTRPI 143 (257)
Q Consensus 93 -------------~~~-----~~~~~v~e~~~~~-----g--~~~~~~~~~~~l~~l~~~-~---~~v~~lsgG~~qr~~ 143 (257)
.+. ....++.+++... + .....+...++++.+++. . +.+..|||||+|++.
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~ 159 (267)
T PRK15112 80 GDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLG 159 (267)
T ss_pred CchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHH
Confidence 000 1123455554321 1 111223445778888884 2 578899999999999
Q ss_pred HHHHhh-CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHh
Q 025114 144 NWRYMQ-KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYA 206 (257)
Q Consensus 144 ~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~ 206 (257)
+++++. +|.+++||||+++| +.++.+. |.++++++|+++.+..+| |++..+.+|++...+
T Consensus 160 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~---d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 160 LARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHIS---DQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhc---CEEEEEECCEEEecC
Confidence 998876 79999999999998 3444433 788999999976665555 666556555544333
No 174
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.5e-28 Score=209.23 Aligned_cols=178 Identities=17% Similarity=0.190 Sum_probs=129.6
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---------CCceecchhhhh---
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---------GYSFFDCDTLIE--- 93 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---------g~~~~d~~~~~~--- 93 (257)
.++|+++|+++.|+++.+|+++||+|.+ |++++|+||||||||||+++|+|++ |.+++++.++..
T Consensus 2 ~~~l~~~~l~~~~~~~~il~~~s~~i~~---G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 78 (251)
T PRK14249 2 DPKIKIRGVNFFYHKHQVLKNINMDFPE---RQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78 (251)
T ss_pred CceEEEEEEEEEECCeeEecceEEEEcC---CCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccccc
Confidence 3579999999999988899999999999 9999999999999999999999986 445555433210
Q ss_pred ------h---------cCCCCCHHHHHHHhC----c---hHHHHHHHHHHHHhcc-------cCccccccChhHhHHHHH
Q 025114 94 ------Q---------SVDGTSVAEIFKLYG----E---GFFREKETEVLQKLSL-------MRQLVVSTGGGAVTRPIN 144 (257)
Q Consensus 94 ------~---------~~~~~~v~e~~~~~g----~---~~~~~~~~~~l~~l~~-------~~~~v~~lsgG~~qr~~~ 144 (257)
. .....++.+++.... . ....+...++++.+++ .++.+..|||||+||+.+
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~l 158 (251)
T PRK14249 79 DVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCI 158 (251)
T ss_pred ChHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHH
Confidence 0 011236766654321 1 0111223345555554 247889999999999999
Q ss_pred HHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccc
Q 025114 145 WRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANA 210 (257)
Q Consensus 145 a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~ 210 (257)
++++. +|++++||||+++| ++++. .+.+++.++|+++.+..+| |++..|.+|++..++++++
T Consensus 159 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~~~~~~~---d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 159 ARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQAARAS---DWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhC---CEEEEEeCCeEEEeCCHHH
Confidence 98886 79999999999998 33443 4678999999977666666 7776777776655555443
No 175
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.94 E-value=7.4e-28 Score=228.17 Aligned_cols=171 Identities=22% Similarity=0.199 Sum_probs=132.4
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh----------
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI---------- 92 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~---------- 92 (257)
++|+++|+++.|+++.+|+|+||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 3 ~~l~~~~l~~~~~~~~il~~isl~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 79 (501)
T PRK11288 3 PYLSFDGIGKTFPGVKALDDISFDCRA---GQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79 (501)
T ss_pred ceEEEeeeEEEECCEEEEeeeeEEEeC---CcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhC
Confidence 579999999999988899999999999 9999999999999999999999987 44555543221
Q ss_pred -----hh---cCCCCCHHHHHHHh------C---chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CC
Q 025114 93 -----EQ---SVDGTSVAEIFKLY------G---EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KG 151 (257)
Q Consensus 93 -----~~---~~~~~~v~e~~~~~------g---~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~ 151 (257)
.+ .+...++.+.+... + .....++..++++.+++.+ +.+..|||||+||+.+++++. +|
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p 159 (501)
T PRK11288 80 GVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNA 159 (501)
T ss_pred CEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCC
Confidence 00 12346777776542 1 0112234567888888753 788999999999999998876 79
Q ss_pred cEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHH
Q 025114 152 ISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGE 203 (257)
Q Consensus 152 ~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~ 203 (257)
++++||||+++| +++++..|.++++++||++.+..+| |++..|.+|++.
T Consensus 160 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~---d~i~~l~~G~i~ 219 (501)
T PRK11288 160 RVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALC---DAITVFKDGRYV 219 (501)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC---CEEEEEECCEEE
Confidence 999999999998 3555555789999999987777776 777677666544
No 176
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=8.7e-28 Score=209.76 Aligned_cols=180 Identities=16% Similarity=0.119 Sum_probs=131.5
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC---------Cceecchhhh-----
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG---------YSFFDCDTLI----- 92 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg---------~~~~d~~~~~----- 92 (257)
++|+++|+++.|++..+|+|+||++++ |++++|+|+||||||||+++|+|++. ...+++.++.
T Consensus 6 ~~l~~~nl~~~~~~~~il~~is~~i~~---Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDTQKILEGVSMEIYQ---SKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCCeeEeeceEEEEcC---CcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 379999999999988899999999999 99999999999999999999999863 2333332221
Q ss_pred -----------hh--cCCCCCHHHHHHHh----C---chHHHHHHHHHHHHhccc-------CccccccChhHhHHHHHH
Q 025114 93 -----------EQ--SVDGTSVAEIFKLY----G---EGFFREKETEVLQKLSLM-------RQLVVSTGGGAVTRPINW 145 (257)
Q Consensus 93 -----------~~--~~~~~~v~e~~~~~----g---~~~~~~~~~~~l~~l~~~-------~~~v~~lsgG~~qr~~~a 145 (257)
.+ .+...++.+.+... + .........++++.+++. ++.+..|||||+||+.++
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la 162 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIA 162 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHH
Confidence 00 01135676665432 1 111123345677777652 377899999999999999
Q ss_pred HHhh-CCcEEEEECCHHHH-----------HHHHHh-cCCCCccccCCCCCCchhhHHHHHHHHHHH-----HHHHHHhc
Q 025114 146 RYMQ-KGISVWLDVPLEAL-----------AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTLWE-----ERGEAYAN 207 (257)
Q Consensus 146 ~~l~-~~~vl~LDep~~~L-----------~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~-----~r~~~y~~ 207 (257)
+++. +|.+++||||+++| +++++. .+.+++.++|+++.+..+| |++..|.+ |++...++
T Consensus 163 ral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~---d~i~~l~~~~~~~G~i~~~~~ 239 (261)
T PRK14258 163 RALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLS---DFTAFFKGNENRIGQLVEFGL 239 (261)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhc---CEEEEEccCCCcCceEEEeCC
Confidence 8876 79999999999998 344433 3788999999987777776 78777776 66555555
Q ss_pred cccee
Q 025114 208 ANARV 212 (257)
Q Consensus 208 ~~~~~ 212 (257)
++++.
T Consensus 240 ~~~~~ 244 (261)
T PRK14258 240 TKKIF 244 (261)
T ss_pred HHHHH
Confidence 54443
No 177
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=8.3e-28 Score=210.58 Aligned_cols=179 Identities=17% Similarity=0.183 Sum_probs=133.2
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---------CCceecchhhhh---
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---------GYSFFDCDTLIE--- 93 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---------g~~~~d~~~~~~--- 93 (257)
..+|+++||++.|+++++|+++||++.+ |++++|+|+||||||||+|+|+|++ |.+++++.++..
T Consensus 18 ~~~l~~~nl~~~~~~~~il~~vsl~i~~---Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 18 EIALSTKDLHVYYGKKEAIKGIDMQFEK---NKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred CeEEEEeeEEEEECCeeeEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 4579999999999988999999999999 9999999999999999999999986 334555533210
Q ss_pred -------------h--cCCCCCHHHHHHHh----Cc---hHHHHHHHHHHHHhccc-------CccccccChhHhHHHHH
Q 025114 94 -------------Q--SVDGTSVAEIFKLY----GE---GFFREKETEVLQKLSLM-------RQLVVSTGGGAVTRPIN 144 (257)
Q Consensus 94 -------------~--~~~~~~v~e~~~~~----g~---~~~~~~~~~~l~~l~~~-------~~~v~~lsgG~~qr~~~ 144 (257)
+ .....++.+.+... +. ........++++.+++. ++.+..||||++||+.+
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~l 174 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCI 174 (267)
T ss_pred ChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHH
Confidence 0 01134777766532 11 11223345567777652 37789999999999999
Q ss_pred HHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccce
Q 025114 145 WRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANAR 211 (257)
Q Consensus 145 a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~ 211 (257)
++++. +|.+++||||+++| ++++. .+.+++.++|+++.+..+| |++..|.+|++..++++..+
T Consensus 175 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~---d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 175 ARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQQAARAS---DYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhc---CEEEEEECCEEEEeCCHHHH
Confidence 98876 79999999999988 34443 3678899999977766666 78777777776666655444
No 178
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.94 E-value=1.1e-26 Score=197.07 Aligned_cols=160 Identities=19% Similarity=0.182 Sum_probs=121.9
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh---------
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI--------- 92 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~--------- 92 (257)
.++|+++|+++.|+++.+++++||++.+ |++++|+|+||||||||+|+|+|++ |.+.+++..+.
T Consensus 9 ~~~l~~~~l~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~ 85 (214)
T PRK13543 9 PPLLAAHALAFSRNEEPVFGPLDFHVDA---GEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMA 85 (214)
T ss_pred cceEEEeeEEEecCCceeeecceEEECC---CCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceE
Confidence 4579999999999988899999999999 9999999999999999999999987 44555543221
Q ss_pred --hh---cCCCCCHHHHHHHhCc---hHHHHHHHHHHHHhccc---CccccccChhHhHHHHHHHHhh-CCcEEEEECCH
Q 025114 93 --EQ---SVDGTSVAEIFKLYGE---GFFREKETEVLQKLSLM---RQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPL 160 (257)
Q Consensus 93 --~~---~~~~~~v~e~~~~~g~---~~~~~~~~~~l~~l~~~---~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~ 160 (257)
.+ .+.+.++.+.+..... ....+...++++.+++. ++.+..||||++|++.+++++. +|++++||||+
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 165 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPY 165 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 01 1123567766543210 11123345677888765 3788999999999999998876 79999999999
Q ss_pred HHH-----------HHHHHhcCCCCccccCCCCCCchhh
Q 025114 161 EAL-----------AQRIAAVGTDSRPLLHQCESGDAYT 188 (257)
Q Consensus 161 ~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~ 188 (257)
++| ++++.+.+.+++.++|+++.+..+|
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~ 204 (214)
T PRK13543 166 ANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVR 204 (214)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhc
Confidence 998 3444445788999999977766665
No 179
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.94 E-value=4.5e-27 Score=200.94 Aligned_cols=157 Identities=21% Similarity=0.236 Sum_probs=118.7
Q ss_pred CcceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh--------
Q 025114 25 SASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI-------- 92 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~-------- 92 (257)
+.++|+++||++.|+++++++|+||+|++ |++++|+||||||||||+++|+|++ |.+++++..+.
T Consensus 4 ~~~~i~~~~l~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 80 (225)
T PRK10247 4 NSPLLQLQNVGYLAGDAKILNNISFSLRA---GEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYR 80 (225)
T ss_pred CCceEEEeccEEeeCCceeeeccEEEEcC---CCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHH
Confidence 34579999999999988999999999999 9999999999999999999999987 44555553221
Q ss_pred ------hh--cCCCCCHHHHHHHh----CchHHHHHHHHHHHHhccc----CccccccChhHhHHHHHHHHhh-CCcEEE
Q 025114 93 ------EQ--SVDGTSVAEIFKLY----GEGFFREKETEVLQKLSLM----RQLVVSTGGGAVTRPINWRYMQ-KGISVW 155 (257)
Q Consensus 93 ------~~--~~~~~~v~e~~~~~----g~~~~~~~~~~~l~~l~~~----~~~v~~lsgG~~qr~~~a~~l~-~~~vl~ 155 (257)
.+ .+...++.+.+... +.........++++.+++. ++.+..||||++||+.+++++. +|.+++
T Consensus 81 ~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 160 (225)
T PRK10247 81 QQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLL 160 (225)
T ss_pred hccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 00 11234777765431 1111123345778888874 3789999999999999998876 799999
Q ss_pred EECCHHHH-----------HHHHHh-cCCCCccccCCCCCC
Q 025114 156 LDVPLEAL-----------AQRIAA-VGTDSRPLLHQCESG 184 (257)
Q Consensus 156 LDep~~~L-----------~~rl~~-~g~~~~~~~h~~~~~ 184 (257)
||||+++| ++++.. .|.+++.++|+.+.+
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~ 201 (225)
T PRK10247 161 LDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEI 201 (225)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHH
Confidence 99999998 344433 377899999996544
No 180
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.94 E-value=5.6e-28 Score=225.29 Aligned_cols=183 Identities=21% Similarity=0.288 Sum_probs=143.8
Q ss_pred cceEEecceeeeeCcc----ccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC--------Cceecchhhhh
Q 025114 26 ASVLESGNVHAPIDEA----QVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG--------YSFFDCDTLIE 93 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~----~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg--------~~~~d~~~~~~ 93 (257)
.++|+++||++.|... .+++||||+|.+ ||+++|+|.|||||||+++.|.|++. .+.+++.++..
T Consensus 3 ~~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~---GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~ 79 (539)
T COG1123 3 SPLLEVENLTVEFATDGGRVPAVRDVSFEVEP---GEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLG 79 (539)
T ss_pred CceEEEeceEEEEecCCcceeeeecceEEecC---CcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhc
Confidence 3589999999999642 599999999999 99999999999999999999999983 34555543311
Q ss_pred h------c----------------C-CCCCH----HHHHHHhC---chHHHHHHHHHHHHhcccC---c--cccccChhH
Q 025114 94 Q------S----------------V-DGTSV----AEIFKLYG---EGFFREKETEVLQKLSLMR---Q--LVVSTGGGA 138 (257)
Q Consensus 94 ~------~----------------~-~~~~v----~e~~~~~g---~~~~~~~~~~~l~~l~~~~---~--~v~~lsgG~ 138 (257)
. . + +-+++ .|.+..++ ....+++..++|+.+++.+ + ++.+|||||
T Consensus 80 l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~ 159 (539)
T COG1123 80 LSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGM 159 (539)
T ss_pred CCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchH
Confidence 0 0 0 11222 23333333 2334556678899999865 3 899999999
Q ss_pred hHHHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHh-cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHH
Q 025114 139 VTRPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAY 205 (257)
Q Consensus 139 ~qr~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y 205 (257)
+||+.+|.++. +|+++++||||..| ++++.+ .|++++.++||+.-+..+| |++..|++|+++.+
T Consensus 160 rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~a---Drv~Vm~~G~iVE~ 236 (539)
T COG1123 160 RQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELA---DRVVVMYKGEIVET 236 (539)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhc---CeEEEEECCEEEEe
Confidence 99999997776 89999999999998 566654 4999999999998888888 99999999999999
Q ss_pred hcccceecc
Q 025114 206 ANANARVSL 214 (257)
Q Consensus 206 ~~~~~~~~~ 214 (257)
|++++++..
T Consensus 237 G~~~~i~~~ 245 (539)
T COG1123 237 GPTEEILSN 245 (539)
T ss_pred cCHHHHHhc
Confidence 998888743
No 181
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=8.7e-28 Score=208.25 Aligned_cols=174 Identities=17% Similarity=0.197 Sum_probs=126.2
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---------CCceecchhhhh----
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---------GYSFFDCDTLIE---- 93 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---------g~~~~d~~~~~~---- 93 (257)
..|+++||++.|+++.+|+|+||+|++ |++++|+||||||||||+++|+|++ |.+++++..+..
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGDFQALKKINLDIEE---NQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECCceeeecceEEEcC---CCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 368999999999988899999999999 9999999999999999999999964 444555433210
Q ss_pred ------------hc--CCCCCHHHHHHHh----Cc---hHHHHHHHHHHHHhccc-------CccccccChhHhHHHHHH
Q 025114 94 ------------QS--VDGTSVAEIFKLY----GE---GFFREKETEVLQKLSLM-------RQLVVSTGGGAVTRPINW 145 (257)
Q Consensus 94 ------------~~--~~~~~v~e~~~~~----g~---~~~~~~~~~~l~~l~~~-------~~~v~~lsgG~~qr~~~a 145 (257)
+. ....++.+.+... +. ...++...++++.+++. ++.+..|||||+||+.++
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 158 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIA 158 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHH
Confidence 00 1134666665432 10 11233344566666542 367899999999999999
Q ss_pred HHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhc
Q 025114 146 RYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN 207 (257)
Q Consensus 146 ~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~ 207 (257)
+++. +|++++||||+++| ++++. .+.+++.++|+++.+..+| |++..+.+|++..+++
T Consensus 159 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~---d~v~~l~~G~i~~~~~ 228 (250)
T PRK14240 159 RALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQQASRIS---DKTAFFLNGEIVEFGD 228 (250)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHHHHHhhC---CEEEEEECCEEEEeCC
Confidence 8876 79999999999998 34443 3678899999976666665 6766666665544443
No 182
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.2e-27 Score=207.54 Aligned_cols=177 Identities=18% Similarity=0.195 Sum_probs=127.7
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---------CCceecchhhhh----
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---------GYSFFDCDTLIE---- 93 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---------g~~~~d~~~~~~---- 93 (257)
.+|+++|+++.|+++.+|+++||+|.+ |++++|+|+||||||||+|+|+|++ |.+.+++.++..
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (252)
T PRK14272 3 LLLSAQDVNIYYGDKQAVKNVNLDVQR---GTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79 (252)
T ss_pred EEEEEeeeEEEECCEEeeccceEEEcC---CCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccC
Confidence 368999999999988999999999999 9999999999999999999999985 444555533210
Q ss_pred -----h----------cCCCCCHHHHHHHh----C---chHHHHHHHHHHHHhcc-------cCccccccChhHhHHHHH
Q 025114 94 -----Q----------SVDGTSVAEIFKLY----G---EGFFREKETEVLQKLSL-------MRQLVVSTGGGAVTRPIN 144 (257)
Q Consensus 94 -----~----------~~~~~~v~e~~~~~----g---~~~~~~~~~~~l~~l~~-------~~~~v~~lsgG~~qr~~~ 144 (257)
. .+...++.+.+... + .....+...++++.+++ .++.+..|||||+||+.+
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 159 (252)
T PRK14272 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCI 159 (252)
T ss_pred HHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHH
Confidence 0 12235777766431 1 01111222334444443 236789999999999999
Q ss_pred HHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccc
Q 025114 145 WRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANA 210 (257)
Q Consensus 145 a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~ 210 (257)
++++. +|.+++||||+++| +++++ .+.+++.++|+++.+..+| |++..|.+|++...+++++
T Consensus 160 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~---d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14272 160 ARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-KVTTIIIVTHNMHQAARVS---DTTSFFLVGDLVEHGPTDQ 233 (252)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhC---CEEEEEECCEEEEeCCHHH
Confidence 98876 79999999999988 34444 3578899999977666666 7776777776655454443
No 183
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=7.3e-28 Score=213.22 Aligned_cols=182 Identities=18% Similarity=0.181 Sum_probs=132.6
Q ss_pred ceEEecceeeeeCcc-----ccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh-----
Q 025114 27 SVLESGNVHAPIDEA-----QVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI----- 92 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~-----~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~----- 92 (257)
..|+++|+++.|+++ .+|+++||+|.+ |++++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKK---NKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKK 81 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeC---CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccc
Confidence 458999999999864 499999999999 9999999999999999999999987 44455543210
Q ss_pred --------------hhc----CCCCCHHHHHHHh----Cc--hHHHHHHHHHHHHhccc----CccccccChhHhHHHHH
Q 025114 93 --------------EQS----VDGTSVAEIFKLY----GE--GFFREKETEVLQKLSLM----RQLVVSTGGGAVTRPIN 144 (257)
Q Consensus 93 --------------~~~----~~~~~v~e~~~~~----g~--~~~~~~~~~~l~~l~~~----~~~v~~lsgG~~qr~~~ 144 (257)
.+. ....++.+.+... +. ....+...++++.+++. ++.+..|||||+||+.+
T Consensus 82 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~l 161 (289)
T PRK13645 82 IKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVAL 161 (289)
T ss_pred cccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHH
Confidence 000 0123555554321 11 11123344677777773 37889999999999999
Q ss_pred HHHhh-CCcEEEEECCHHHH-----------HHHHHh-cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccce
Q 025114 145 WRYMQ-KGISVWLDVPLEAL-----------AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANAR 211 (257)
Q Consensus 145 a~~l~-~~~vl~LDep~~~L-----------~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~ 211 (257)
++++. +|.+++||||+++| ++++.+ .|.++++++|+++.+..+| |++..|.+|++..+++++.+
T Consensus 162 aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~---d~i~~l~~G~i~~~g~~~~~ 238 (289)
T PRK13645 162 AGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIA---DEVIVMHEGKVISIGSPFEI 238 (289)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC---CEEEEEECCEEEEeCCHHHH
Confidence 98876 79999999999998 344543 3788999999987766776 78777777776666665544
Q ss_pred ecc
Q 025114 212 VSL 214 (257)
Q Consensus 212 ~~~ 214 (257)
...
T Consensus 239 ~~~ 241 (289)
T PRK13645 239 FSN 241 (289)
T ss_pred hcC
Confidence 443
No 184
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1e-27 Score=207.88 Aligned_cols=175 Identities=17% Similarity=0.176 Sum_probs=127.6
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC---------Cceecchhhh-----
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG---------YSFFDCDTLI----- 92 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg---------~~~~d~~~~~----- 92 (257)
++|+++|+++.|+++.+|+++||+|++ |++++|+|+||||||||+|+|+|++. .+.+++.++.
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~ 79 (251)
T PRK14251 3 NIISAKDVHLSYGNYEALHGISLDFEE---KELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79 (251)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcC---CCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccch
Confidence 478999999999988999999999999 99999999999999999999999863 2344443221
Q ss_pred ----hh---------cCCCCCHHHHHHHh----C---chHHHHHHHHHHHHhccc-------CccccccChhHhHHHHHH
Q 025114 93 ----EQ---------SVDGTSVAEIFKLY----G---EGFFREKETEVLQKLSLM-------RQLVVSTGGGAVTRPINW 145 (257)
Q Consensus 93 ----~~---------~~~~~~v~e~~~~~----g---~~~~~~~~~~~l~~l~~~-------~~~v~~lsgG~~qr~~~a 145 (257)
.. .+...++.+.+... + .........++++.+++. ++.+..|||||+|++.++
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la 159 (251)
T PRK14251 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIA 159 (251)
T ss_pred HHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHH
Confidence 00 01134777766432 1 011122345667777762 367899999999999999
Q ss_pred HHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcc
Q 025114 146 RYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANA 208 (257)
Q Consensus 146 ~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~ 208 (257)
+++. +|++++||||+++| ++++. .+.++++++|+++.+..+| |++..|.+|++...+++
T Consensus 160 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~---d~i~~l~~G~i~~~~~~ 230 (251)
T PRK14251 160 RALAVRPKVVLLDEPTSALDPISSSEIEETLMELK-HQYTFIMVTHNLQQAGRIS---DQTAFLMNGDLIEAGPT 230 (251)
T ss_pred HHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH-cCCeEEEEECCHHHHHhhc---CEEEEEECCEEEEeCCH
Confidence 8876 79999999999988 34443 3678899999977666665 77766666665444443
No 185
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.2e-27 Score=202.29 Aligned_cols=161 Identities=20% Similarity=0.200 Sum_probs=119.5
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh------------
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI------------ 92 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~------------ 92 (257)
|+++|+++.|+++.. ++||++.+ |++++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 1 i~~~~l~~~~~~~~~--~is~~i~~---Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYGEQPM--HFDLTFAQ---GEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSML 75 (211)
T ss_pred CEEEeEEEEeCCEec--ceEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEE
Confidence 478999999987643 99999999 9999999999999999999999987 44566554321
Q ss_pred hh---cCCCCCHHHHHHHhCc------hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECC
Q 025114 93 EQ---SVDGTSVAEIFKLYGE------GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVP 159 (257)
Q Consensus 93 ~~---~~~~~~v~e~~~~~g~------~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep 159 (257)
.+ .+.+.++.+.+..... ....+...++++.+++.+ +.+..||||++||+.+++++. +|++++||||
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP 155 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEP 155 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 01 1235678887653211 112234567788888753 788999999999999998886 7999999999
Q ss_pred HHHH-----------HHHHHh-cCCCCccccCCCCCCchhhHHHHHHHHH
Q 025114 160 LEAL-----------AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTL 197 (257)
Q Consensus 160 ~~~L-----------~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l 197 (257)
+++| ++++.. .+.+++.++|+++.+..+| |++..+
T Consensus 156 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~---d~i~~l 202 (211)
T cd03298 156 FAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLA---QRVVFL 202 (211)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhh---CEEEEE
Confidence 9998 344443 3788999999966555544 554333
No 186
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.1e-27 Score=232.26 Aligned_cols=181 Identities=19% Similarity=0.212 Sum_probs=140.3
Q ss_pred cceEEecceeeeeC-----------ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchh
Q 025114 26 ASVLESGNVHAPID-----------EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDT 90 (257)
Q Consensus 26 ~~~l~~~~l~~~~~-----------~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~ 90 (257)
.++|+++||++.|+ .+.+|++|||+|.+ |++++|+|+||||||||+|+|+|++ |.+++++.+
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~---Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~ 387 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWP---GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQR 387 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcC---CCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEE
Confidence 46899999999996 14699999999999 9999999999999999999999997 445555532
Q ss_pred hh-----------------hh-----cCCCCCHHHHHHHh----Cc---hHHHHHHHHHHHHhccc----CccccccChh
Q 025114 91 LI-----------------EQ-----SVDGTSVAEIFKLY----GE---GFFREKETEVLQKLSLM----RQLVVSTGGG 137 (257)
Q Consensus 91 ~~-----------------~~-----~~~~~~v~e~~~~~----g~---~~~~~~~~~~l~~l~~~----~~~v~~lsgG 137 (257)
+. .+ ....+++.+.+... +. ...+++..++++.+++. ++.+.+||||
T Consensus 388 i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgG 467 (623)
T PRK10261 388 IDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGG 467 (623)
T ss_pred CCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHH
Confidence 20 01 11245677765431 21 11234456788998884 3789999999
Q ss_pred HhHHHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHH
Q 025114 138 AVTRPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEA 204 (257)
Q Consensus 138 ~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~ 204 (257)
|+||+.+|+++. +|++++||||+++| ++++++. |.+++.++||++.+..+| |++..|++|++..
T Consensus 468 qrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~---dri~vl~~G~iv~ 544 (623)
T PRK10261 468 QRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERIS---HRVAVMYLGQIVE 544 (623)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC---CEEEEEECCEEEE
Confidence 999999998886 79999999999998 4555544 889999999988888887 8888888888776
Q ss_pred Hhccccee
Q 025114 205 YANANARV 212 (257)
Q Consensus 205 y~~~~~~~ 212 (257)
.|++++++
T Consensus 545 ~g~~~~i~ 552 (623)
T PRK10261 545 IGPRRAVF 552 (623)
T ss_pred ecCHHHHh
Confidence 66666554
No 187
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.1e-27 Score=227.30 Aligned_cols=175 Identities=16% Similarity=0.198 Sum_probs=131.0
Q ss_pred cceEEecceeeeeC---ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC-----Cceecchhhh-----
Q 025114 26 ASVLESGNVHAPID---EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG-----YSFFDCDTLI----- 92 (257)
Q Consensus 26 ~~~l~~~~l~~~~~---~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg-----~~~~d~~~~~----- 92 (257)
.++|+++|+++.|+ ++.+|+|+||+|++ |++++|+|+||||||||+|+|+|++. .+++++.++.
T Consensus 257 ~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~---Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~ 333 (506)
T PRK13549 257 EVILEVRNLTAWDPVNPHIKRVDDVSFSLRR---GEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQ 333 (506)
T ss_pred CceEEEecCccccccccccccccceeeEEcC---CcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHH
Confidence 35799999999993 46799999999999 99999999999999999999999864 2344442210
Q ss_pred ----------hh------cCCCCCHHHHHHHhC-----------chHHHHHHHHHHHHhccc----CccccccChhHhHH
Q 025114 93 ----------EQ------SVDGTSVAEIFKLYG-----------EGFFREKETEVLQKLSLM----RQLVVSTGGGAVTR 141 (257)
Q Consensus 93 ----------~~------~~~~~~v~e~~~~~g-----------~~~~~~~~~~~l~~l~~~----~~~v~~lsgG~~qr 141 (257)
.+ .+...++.+.+.... ....++...++++.+++. ++++.+|||||+||
T Consensus 334 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqr 413 (506)
T PRK13549 334 QAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQK 413 (506)
T ss_pred HHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHH
Confidence 11 122457777654210 011123456788888874 26789999999999
Q ss_pred HHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHh
Q 025114 142 PINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYA 206 (257)
Q Consensus 142 ~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~ 206 (257)
+.+|+++. +|.+++|||||++| +..+++.|.+++.++||++.+..+| |++..|.+|++...+
T Consensus 414 v~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~---d~v~~l~~G~i~~~~ 487 (506)
T PRK13549 414 AVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLS---DRVLVMHEGKLKGDL 487 (506)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhC---CEEEEEECCEEEEEe
Confidence 99998876 79999999999998 3555556889999999988777777 777666666554333
No 188
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.8e-27 Score=208.67 Aligned_cols=168 Identities=21% Similarity=0.204 Sum_probs=123.3
Q ss_pred CcceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---------CCceecchhhh---
Q 025114 25 SASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---------GYSFFDCDTLI--- 92 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---------g~~~~d~~~~~--- 92 (257)
...+|+++||++.|+++.+|+++||+|++ |++++|+||||||||||+++|+|++ |.+++++.++.
T Consensus 10 ~~~~l~i~nl~~~~~~~~il~~is~~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 10 KNIIISLQNVTISYGTFEAVKNVFCDIPR---GKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred CCceEEEEeEEEEECCEEEEcceEEEEcC---CCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 34689999999999988899999999999 9999999999999999999999985 33445443221
Q ss_pred -------------hhc--CCCCCHHHHHHHhCc-----hHHHHHHHHHHHHhcc-------cCccccccChhHhHHHHHH
Q 025114 93 -------------EQS--VDGTSVAEIFKLYGE-----GFFREKETEVLQKLSL-------MRQLVVSTGGGAVTRPINW 145 (257)
Q Consensus 93 -------------~~~--~~~~~v~e~~~~~g~-----~~~~~~~~~~l~~l~~-------~~~~v~~lsgG~~qr~~~a 145 (257)
.+. +...++.+.+..... ....+...++++.+++ .++.+..||||++||+.++
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~la 166 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIA 166 (269)
T ss_pred CCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHH
Confidence 000 112367776653211 1112333456776654 2467899999999999999
Q ss_pred HHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHH
Q 025114 146 RYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWE 199 (257)
Q Consensus 146 ~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~ 199 (257)
+++. +|++++||||+++| +++++ .+.+++.++|+++.+..+| |++..|.+
T Consensus 167 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~---d~i~~l~~ 228 (269)
T PRK14259 167 RTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-KNFTIVIVTHNMQQAVRVS---DMTAFFNA 228 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhc---CEEEEEec
Confidence 8876 79999999999988 34443 3578899999977666666 77655554
No 189
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=8.5e-28 Score=206.26 Aligned_cols=172 Identities=22% Similarity=0.248 Sum_probs=128.5
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-----------
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE----------- 93 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~----------- 93 (257)
|+++|+++.|+++.+++++||++.+ |++++|+|+||||||||+++|+|.+ |.+++++.++..
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~---Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKE---GEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTV 77 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECC---CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEE
Confidence 4689999999988999999999999 9999999999999999999999997 445555543211
Q ss_pred ----hcCCCCCHHHHHHHhC------chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECC
Q 025114 94 ----QSVDGTSVAEIFKLYG------EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVP 159 (257)
Q Consensus 94 ----~~~~~~~v~e~~~~~g------~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep 159 (257)
..+.+.++.+.+.... .........++++.+++.+ +.+..||+|++|++.+++++. +|++++||||
T Consensus 78 ~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP 157 (232)
T cd03300 78 FQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEP 157 (232)
T ss_pred ecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 0122457777654321 1112234456788888854 788999999999999998876 7999999999
Q ss_pred HHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHh
Q 025114 160 LEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYA 206 (257)
Q Consensus 160 ~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~ 206 (257)
+++| ++++.+. |.+++.++|+++.+..+| |++..+.+|++...+
T Consensus 158 ~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~---d~i~~l~~G~~~~~~ 213 (232)
T cd03300 158 LGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMS---DRIAVMNKGKIQQIG 213 (232)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhc---CEEEEEECCEEEecC
Confidence 9998 3455443 789999999976555555 666666666554333
No 190
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.1e-27 Score=208.57 Aligned_cols=180 Identities=18% Similarity=0.201 Sum_probs=131.2
Q ss_pred CcceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---------CCceecchhhhh--
Q 025114 25 SASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---------GYSFFDCDTLIE-- 93 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---------g~~~~d~~~~~~-- 93 (257)
..++|+++|+++.|+++.+|+++||+|++ |++++|+|+||||||||+++|+|++ |.+++++.++..
T Consensus 22 ~~~~l~~~nl~~~~~~~~il~~vs~~i~~---Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~ 98 (272)
T PRK14236 22 EQTALEVRNLNLFYGDKQALFDISMRIPK---NRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK 98 (272)
T ss_pred CCcEEEEEEEEEEECCeeEeeeEEEEEcC---CCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc
Confidence 35689999999999988899999999999 9999999999999999999999985 334554433210
Q ss_pred -------h---------cCCCCCHHHHHHHh----Cc---hHHHHHHHHHHHHhccc-------CccccccChhHhHHHH
Q 025114 94 -------Q---------SVDGTSVAEIFKLY----GE---GFFREKETEVLQKLSLM-------RQLVVSTGGGAVTRPI 143 (257)
Q Consensus 94 -------~---------~~~~~~v~e~~~~~----g~---~~~~~~~~~~l~~l~~~-------~~~v~~lsgG~~qr~~ 143 (257)
. .....++.+.+... +. ....+...++++.+++. ++.+..||||++||+.
T Consensus 99 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 178 (272)
T PRK14236 99 VDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLV 178 (272)
T ss_pred cCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHH
Confidence 0 01123676665431 10 11123344566666653 3678999999999999
Q ss_pred HHHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccce
Q 025114 144 NWRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANAR 211 (257)
Q Consensus 144 ~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~ 211 (257)
+++++. +|++++||||+++| ++++++ +.+++.++|+++.+..+| |++..+.+|++...+++++.
T Consensus 179 laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~~~~~~---d~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 179 IARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQQAARVS---DYTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHHHHhhC---CEEEEEECCEEEecCCHHHH
Confidence 998876 79999999999998 344443 678899999977666666 77777777776655554433
No 191
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.94 E-value=1.3e-27 Score=227.84 Aligned_cols=181 Identities=18% Similarity=0.182 Sum_probs=133.9
Q ss_pred cceEEecceeeeeCc----cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCC---------ceecchhhh
Q 025114 26 ASVLESGNVHAPIDE----AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGY---------SFFDCDTLI 92 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~----~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~---------~~~d~~~~~ 92 (257)
+++|+++|+++.|++ +.+|+++||+|.+ |++++|+||||||||||+|+|+|++.+ +.+++.++.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~---Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~ 79 (529)
T PRK15134 3 QPLLAIENLSVAFRQQQTVRTVVNDVSLQIEA---GETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLL 79 (529)
T ss_pred CceEEEeceEEEecCCCCceeeeeceEEEEeC---CCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecc
Confidence 357999999999963 5799999999999 999999999999999999999998742 234432210
Q ss_pred ------------------hhc-----CCCCCHHHHHHH----h-C--chHHHHHHHHHHHHhccc------CccccccCh
Q 025114 93 ------------------EQS-----VDGTSVAEIFKL----Y-G--EGFFREKETEVLQKLSLM------RQLVVSTGG 136 (257)
Q Consensus 93 ------------------~~~-----~~~~~v~e~~~~----~-g--~~~~~~~~~~~l~~l~~~------~~~v~~lsg 136 (257)
.+. ....++.+.+.. . + .....++..++++.+++. ++.+..|||
T Consensus 80 ~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSg 159 (529)
T PRK15134 80 HASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSG 159 (529)
T ss_pred cCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCH
Confidence 000 011244443321 1 1 111234456788888884 368999999
Q ss_pred hHhHHHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHH
Q 025114 137 GAVTRPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGE 203 (257)
Q Consensus 137 G~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~ 203 (257)
||+||+.+|+++. +|++++|||||++| +++++.. |.++++++||++.+..+| |++..|.+|++.
T Consensus 160 Ge~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~---dri~~l~~G~i~ 236 (529)
T PRK15134 160 GERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLA---DRVAVMQNGRCV 236 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhc---CEEEEEECCEEE
Confidence 9999999998886 79999999999998 4565544 789999999988777777 888778777766
Q ss_pred HHhccccee
Q 025114 204 AYANANARV 212 (257)
Q Consensus 204 ~y~~~~~~~ 212 (257)
.++++++++
T Consensus 237 ~~g~~~~~~ 245 (529)
T PRK15134 237 EQNRAATLF 245 (529)
T ss_pred EeCCHHHHh
Confidence 666554443
No 192
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.7e-27 Score=209.29 Aligned_cols=179 Identities=17% Similarity=0.157 Sum_probs=129.4
Q ss_pred CCcceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---------CCceecchhhhh-
Q 025114 24 LSASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---------GYSFFDCDTLIE- 93 (257)
Q Consensus 24 ~~~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---------g~~~~d~~~~~~- 93 (257)
...++|+++|+++.|+++.+|+|+||+|.+ |++++|+||||||||||+++|+|++ |.+.+++..+..
T Consensus 35 ~~~~~l~~~~l~~~~~~~~il~~vsl~i~~---Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~ 111 (286)
T PRK14275 35 GGKPHVVAKNFSIYYGEFEAVKKVNADILS---KYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGK 111 (286)
T ss_pred CCceEEEEeeeEEEECCEEEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhc
Confidence 356789999999999888899999999999 9999999999999999999999963 334455433210
Q ss_pred --------h---------cCCCCCHHHHHHHh----Cc---hHHHHHHHHHHHHhccc-------CccccccChhHhHHH
Q 025114 94 --------Q---------SVDGTSVAEIFKLY----GE---GFFREKETEVLQKLSLM-------RQLVVSTGGGAVTRP 142 (257)
Q Consensus 94 --------~---------~~~~~~v~e~~~~~----g~---~~~~~~~~~~l~~l~~~-------~~~v~~lsgG~~qr~ 142 (257)
. .+...++.+++... +. ...++...++++.+++. ++.+..|||||+||+
T Consensus 112 ~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv 191 (286)
T PRK14275 112 FTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRL 191 (286)
T ss_pred ccchHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHH
Confidence 0 01123777766532 10 11122334566666652 367899999999999
Q ss_pred HHHHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccc
Q 025114 143 INWRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN 209 (257)
Q Consensus 143 ~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~ 209 (257)
.+++++. +|.+++||||+++| ++++.. +.++++++|+++.+..+| |++..|.+|++..+++++
T Consensus 192 ~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~~~~~~---d~i~~L~~G~i~~~g~~~ 266 (286)
T PRK14275 192 CVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQASRVS---DYTMFFYEGVLVEHAPTA 266 (286)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhC---CEEEEEECCEEEEeCCHH
Confidence 9998876 79999999999998 233332 568899999977666666 777666666655444443
No 193
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.94 E-value=2.1e-27 Score=226.01 Aligned_cols=174 Identities=20% Similarity=0.224 Sum_probs=129.0
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh------CCceec---------------
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL------GYSFFD--------------- 87 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l------g~~~~d--------------- 87 (257)
|+++|+++.|+++.+|+++||+|.+ |++++|+||||||||||+|+|+|++ |.+.++
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~---Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEE---GEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcC---CCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 5789999999988899999999999 9999999999999999999999985 223333
Q ss_pred --------chhh------------------------hhh----cCCCCCHHHHHHHh----Cc--hHHHHHHHHHHHHhc
Q 025114 88 --------CDTL------------------------IEQ----SVDGTSVAEIFKLY----GE--GFFREKETEVLQKLS 125 (257)
Q Consensus 88 --------~~~~------------------------~~~----~~~~~~v~e~~~~~----g~--~~~~~~~~~~l~~l~ 125 (257)
+.++ ..+ .+...++.+.+... +. ...+++..++++.++
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 1000 001 11234666665431 11 112344567888888
Q ss_pred ccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHh-cCCCCccccCCCCCCchhhH
Q 025114 126 LMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAA-VGTDSRPLLHQCESGDAYTE 189 (257)
Q Consensus 126 ~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~-~g~~~~~~~h~~~~~~~~~~ 189 (257)
+.+ +.+..|||||+||+.+|+++. +|++++||||+++| ++++.+ .|.++++++||++.+..+|
T Consensus 158 l~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~- 236 (520)
T TIGR03269 158 LSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLS- 236 (520)
T ss_pred ChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhc-
Confidence 854 789999999999999998886 79999999999998 355544 4789999999987777776
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 025114 190 ALNRLSTLWEERGEAYANA 208 (257)
Q Consensus 190 ~~~~v~~l~~~r~~~y~~~ 208 (257)
|++..|.+|++...+++
T Consensus 237 --d~i~~l~~G~i~~~g~~ 253 (520)
T TIGR03269 237 --DKAIWLENGEIKEEGTP 253 (520)
T ss_pred --CEEEEEeCCEEeeecCH
Confidence 77767766665443333
No 194
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.2e-27 Score=226.28 Aligned_cols=175 Identities=18% Similarity=0.172 Sum_probs=133.5
Q ss_pred ecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh--------------
Q 025114 31 SGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI-------------- 92 (257)
Q Consensus 31 ~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~-------------- 92 (257)
++|+++.|+++++|+|+||+|++ |++++|+||||||||||+|+|+|++ |.+.+++.++.
T Consensus 1 ~~nl~~~~~~~~il~~vs~~i~~---Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPGVKALDNVNLKVRP---HSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCCEEeeeeeeEEEcC---CcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 47999999988999999999999 9999999999999999999999987 44555553321
Q ss_pred -hh---cCCCCCHHHHHHHhC---------chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEE
Q 025114 93 -EQ---SVDGTSVAEIFKLYG---------EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVW 155 (257)
Q Consensus 93 -~~---~~~~~~v~e~~~~~g---------~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~ 155 (257)
.+ .+...++.+.+.... .....++..++++.+++.+ +.+..|||||+||+.+++++. +|++++
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lll 157 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVI 157 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 01 113467777765321 0111234567788888753 789999999999999998876 799999
Q ss_pred EECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccce
Q 025114 156 LDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANAR 211 (257)
Q Consensus 156 LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~ 211 (257)
||||+++| +++++..|.++++++|+++.+..+| |++..|.+|++...++++.+
T Consensus 158 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~---d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 158 MDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLC---DEITILRDGQWIATQPLAGL 221 (491)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhC---CEEEEEECCEEEeecChhhC
Confidence 99999998 4555556889999999987777777 78877777776665555443
No 195
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.93 E-value=2e-27 Score=206.35 Aligned_cols=174 Identities=21% Similarity=0.257 Sum_probs=125.2
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchh-----hh-----
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDT-----LI----- 92 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~-----~~----- 92 (257)
++|+++||++.|+++.+|+|+||+|++ |++++|+|+||||||||+++|+|++ |.+++++.+ +.
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGKGCRDVSFDLYP---GEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEA 78 (253)
T ss_pred ceEEEeeeEEEeCCceEeecceEEEeC---CcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHH
Confidence 479999999999988899999999999 9999999999999999999999997 445555432 10
Q ss_pred -------------hhcC-----CCCCHHHHHHH----hCc---hHHHHHHHHHHHHhccc----CccccccChhHhHHHH
Q 025114 93 -------------EQSV-----DGTSVAEIFKL----YGE---GFFREKETEVLQKLSLM----RQLVVSTGGGAVTRPI 143 (257)
Q Consensus 93 -------------~~~~-----~~~~v~e~~~~----~g~---~~~~~~~~~~l~~l~~~----~~~v~~lsgG~~qr~~ 143 (257)
.+.. ...++.+.+.. ... ........++++.+++. ++.+..|||||+||+.
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~ 158 (253)
T TIGR02323 79 ERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQ 158 (253)
T ss_pred HHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHH
Confidence 0000 01233333211 110 11223445778888874 2688999999999999
Q ss_pred HHHHhh-CCcEEEEECCHHHH-----------HHHHHh-cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHh
Q 025114 144 NWRYMQ-KGISVWLDVPLEAL-----------AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYA 206 (257)
Q Consensus 144 ~a~~l~-~~~vl~LDep~~~L-----------~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~ 206 (257)
+++++. +|++++||||+++| +.++.. .+.++++++|+++.+..+| |++..|.+|++...+
T Consensus 159 laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~---d~~~~l~~G~i~~~~ 231 (253)
T TIGR02323 159 IARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLA---QRLLVMQQGRVVESG 231 (253)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc---CEEEEEECCEEEEEC
Confidence 998886 79999999999998 244433 3789999999976655555 666566666544333
No 196
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.93 E-value=1.7e-27 Score=227.07 Aligned_cols=181 Identities=21% Similarity=0.225 Sum_probs=136.4
Q ss_pred cceEEecceeeeeC-----------ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---CCceecchhh
Q 025114 26 ASVLESGNVHAPID-----------EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---GYSFFDCDTL 91 (257)
Q Consensus 26 ~~~l~~~~l~~~~~-----------~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---g~~~~d~~~~ 91 (257)
.++|+++|+++.|+ ++.+|+++||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~---Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i 349 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRP---GETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPL 349 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcC---CCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEc
Confidence 45799999999995 36799999999999 9999999999999999999999986 4455555321
Q ss_pred h-----------------hh-----cCCCCCHHHHHHHh----C----chHHHHHHHHHHHHhccc----CccccccChh
Q 025114 92 I-----------------EQ-----SVDGTSVAEIFKLY----G----EGFFREKETEVLQKLSLM----RQLVVSTGGG 137 (257)
Q Consensus 92 ~-----------------~~-----~~~~~~v~e~~~~~----g----~~~~~~~~~~~l~~l~~~----~~~v~~lsgG 137 (257)
. .+ .+...++.+.+... + ....++...++++.+++. ++.+.+||||
T Consensus 350 ~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 429 (529)
T PRK15134 350 HNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGG 429 (529)
T ss_pred cccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHH
Confidence 0 00 11235777766531 1 111223456788888874 3789999999
Q ss_pred HhHHHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHH
Q 025114 138 AVTRPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEA 204 (257)
Q Consensus 138 ~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~ 204 (257)
|+||+.+|+++. +|++++||||+++| +++++.. |.++++++||++.+..+| |++..|.+|++..
T Consensus 430 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~---d~i~~l~~G~i~~ 506 (529)
T PRK15134 430 QRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALC---HQVIVLRQGEVVE 506 (529)
T ss_pred HHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhc---CeEEEEECCEEEE
Confidence 999999998886 79999999999998 4555444 789999999988777777 8887777776654
Q ss_pred Hhccccee
Q 025114 205 YANANARV 212 (257)
Q Consensus 205 y~~~~~~~ 212 (257)
.+++++++
T Consensus 507 ~~~~~~~~ 514 (529)
T PRK15134 507 QGDCERVF 514 (529)
T ss_pred EcCHHHHh
Confidence 45444443
No 197
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.1e-27 Score=209.07 Aligned_cols=178 Identities=18% Similarity=0.143 Sum_probs=129.9
Q ss_pred CcceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC---------Cceecchhhh---
Q 025114 25 SASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG---------YSFFDCDTLI--- 92 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg---------~~~~d~~~~~--- 92 (257)
+.++|+++||++.|+++.+|+|+||+|++ |++++|+|+||||||||+++|+|++. .+++++..+.
T Consensus 18 ~~~~l~i~nl~~~~~~~~il~~vs~~i~~---Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~ 94 (276)
T PRK14271 18 AAPAMAAVNLTLGFAGKTVLDQVSMGFPA---RAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYR 94 (276)
T ss_pred cCcEEEEeeEEEEECCEEEeeeeEEEEcC---CcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccc
Confidence 46789999999999999999999999999 99999999999999999999999863 3444443221
Q ss_pred ------------hh--cCCCCCHHHHHHHhC-------chHHHHHHHHHHHHhccc-------CccccccChhHhHHHHH
Q 025114 93 ------------EQ--SVDGTSVAEIFKLYG-------EGFFREKETEVLQKLSLM-------RQLVVSTGGGAVTRPIN 144 (257)
Q Consensus 93 ------------~~--~~~~~~v~e~~~~~g-------~~~~~~~~~~~l~~l~~~-------~~~v~~lsgG~~qr~~~ 144 (257)
.+ .....++.+.+.... ....+....++++.+++. ++.+..|||||+||+.+
T Consensus 95 ~~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~L 174 (276)
T PRK14271 95 DVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCL 174 (276)
T ss_pred hhHHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHH
Confidence 00 011357777654321 111222334567777763 25688999999999999
Q ss_pred HHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccc
Q 025114 145 WRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN 209 (257)
Q Consensus 145 a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~ 209 (257)
++++. +|.+++||||+++| ++++.+ +.++++++|+++.+..+| |++..|.+|++...++++
T Consensus 175 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~---dri~~l~~G~i~~~g~~~ 247 (276)
T PRK14271 175 ARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQAARIS---DRAALFFDGRLVEEGPTE 247 (276)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhC---CEEEEEECCEEEEeCCHH
Confidence 98886 79999999999988 334433 478899999977666666 777667666654444443
No 198
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.93 E-value=5.2e-26 Score=190.94 Aligned_cols=154 Identities=23% Similarity=0.151 Sum_probs=117.5
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh-----------
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI----------- 92 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~----------- 92 (257)
||+++|+++.|+++++|+++||++++ |++++|+||||||||||+++|+|++ |.+++++.++.
T Consensus 1 ml~~~~l~~~~~~~~il~~~s~~i~~---Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~ 77 (200)
T PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPA---GGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLC 77 (200)
T ss_pred CEEEEEEEEEeCCeeEEeeeeEEECC---CCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheE
Confidence 47899999999988999999999999 9999999999999999999999987 45566654321
Q ss_pred --hh---cCCCCCHHHHHHHhCc-hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHH
Q 025114 93 --EQ---SVDGTSVAEIFKLYGE-GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEA 162 (257)
Q Consensus 93 --~~---~~~~~~v~e~~~~~g~-~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~ 162 (257)
.+ .+...++.+.+..... ........++++.+++.+ +.+..||||++|++.+++++. +|++++||||+++
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~ 157 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVA 157 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 00 1125677777654210 011223456778777643 678899999999999998876 7999999999999
Q ss_pred H-----------HHHHHhcCCCCccccCCCCCC
Q 025114 163 L-----------AQRIAAVGTDSRPLLHQCESG 184 (257)
Q Consensus 163 L-----------~~rl~~~g~~~~~~~h~~~~~ 184 (257)
| ++++++.+.++++++|+....
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 190 (200)
T PRK13540 158 LDELSLLTIITKIQEHRAKGGAVLLTSHQDLPL 190 (200)
T ss_pred cCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhc
Confidence 8 344444578889999985443
No 199
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.93 E-value=3.3e-27 Score=215.51 Aligned_cols=171 Identities=23% Similarity=0.203 Sum_probs=142.8
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh--------
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE-------- 93 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~-------- 93 (257)
++.+++++++|.|++..++++|||+|.+ ||+.+|+|.||||||||+++|.|++ |.+++++..+-.
T Consensus 2 ~~~l~~~~itK~f~~~~And~V~l~v~~---GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~ 78 (501)
T COG3845 2 EPALEMRGITKRFPGVVANDDVSLSVKK---GEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIR 78 (501)
T ss_pred CceEEEeccEEEcCCEEecCceeeeecC---CcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHH
Confidence 4679999999999999999999999999 9999999999999999999999998 557777765421
Q ss_pred ----------hcCCCCCHHHHHHHhCch---------HHHHHHHHHHHHhccc---CccccccChhHhHHHHHHHHhh-C
Q 025114 94 ----------QSVDGTSVAEIFKLYGEG---------FFREKETEVLQKLSLM---RQLVVSTGGGAVTRPINWRYMQ-K 150 (257)
Q Consensus 94 ----------~~~~~~~v~e~~~~~g~~---------~~~~~~~~~l~~l~~~---~~~v~~lsgG~~qr~~~a~~l~-~ 150 (257)
..++.+|+.|++....+. ..+++..++.++.++. +..+..||-|++||+++..+|. +
T Consensus 79 ~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~ 158 (501)
T COG3845 79 LGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRG 158 (501)
T ss_pred cCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcC
Confidence 123567888887664432 2345556778888874 3889999999999999997765 7
Q ss_pred CcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHH
Q 025114 151 GISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERG 202 (257)
Q Consensus 151 ~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~ 202 (257)
+++++|||||+.| ++++++.|.+++.++|-++++.++| |++..|..|+.
T Consensus 159 a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~ia---DrvTVLR~Gkv 218 (501)
T COG3845 159 ARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIA---DRVTVLRRGKV 218 (501)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhh---CeeEEEeCCeE
Confidence 9999999999988 6888889999999999999988888 88877877763
No 200
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.3e-27 Score=205.84 Aligned_cols=178 Identities=14% Similarity=0.134 Sum_probs=129.5
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC---------Cceecchhhhh---
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG---------YSFFDCDTLIE--- 93 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg---------~~~~d~~~~~~--- 93 (257)
+.+|+++|+++.|+++.+|+++||+|.+ |++++|+|+||||||||+|+|+|++. .+++++.++..
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~isl~i~~---Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (259)
T PRK14260 5 IPAIKVKDLSFYYNTSKAIEGISMDIYR---NKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRI 81 (259)
T ss_pred cceEEEEEEEEEECCeEeecceEEEEcC---CCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccccc
Confidence 4579999999999988899999999999 99999999999999999999999753 34444432210
Q ss_pred ------h---------cCCCCCHHHHHHHhC-------chHHHHHHHHHHHHhcc-------cCccccccChhHhHHHHH
Q 025114 94 ------Q---------SVDGTSVAEIFKLYG-------EGFFREKETEVLQKLSL-------MRQLVVSTGGGAVTRPIN 144 (257)
Q Consensus 94 ------~---------~~~~~~v~e~~~~~g-------~~~~~~~~~~~l~~l~~-------~~~~v~~lsgG~~qr~~~ 144 (257)
. .....++.+.+.... .....+...++++.+++ .++.+..||||++||+.+
T Consensus 82 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 161 (259)
T PRK14260 82 NINRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCI 161 (259)
T ss_pred chHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHH
Confidence 0 012357777664321 01112334466777665 236788999999999999
Q ss_pred HHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHH-----HHHHHHHhc
Q 025114 145 WRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLW-----EERGEAYAN 207 (257)
Q Consensus 145 a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~-----~~r~~~y~~ 207 (257)
++++. +|++++||||+++| ++++.+ +.+++.++|+++.+..+| |++..|. +|++...++
T Consensus 162 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~i~~~~---d~i~~l~~~~~~~G~i~~~~~ 237 (259)
T PRK14260 162 ARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQATRVS---DFTAFFSTDESRIGQMVEFGV 237 (259)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhc---CeEEEEeccCCCCceEEEeCC
Confidence 98876 79999999999998 334433 578999999987777776 7776665 265555554
Q ss_pred ccc
Q 025114 208 ANA 210 (257)
Q Consensus 208 ~~~ 210 (257)
+++
T Consensus 238 ~~~ 240 (259)
T PRK14260 238 TTQ 240 (259)
T ss_pred HHH
Confidence 443
No 201
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.8e-27 Score=208.28 Aligned_cols=180 Identities=18% Similarity=0.234 Sum_probs=134.7
Q ss_pred ceEEecceeeeeCc---cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh-------
Q 025114 27 SVLESGNVHAPIDE---AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI------- 92 (257)
Q Consensus 27 ~~l~~~~l~~~~~~---~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~------- 92 (257)
++|+++||++.|++ ..+|+++||+|.+ |++++|+|+||||||||+++|+|++ |.+++++.++.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~---Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~ 79 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQLNGVSFSITK---GEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNL 79 (277)
T ss_pred ceEEEEEEEEEcCCCCcCeeeeeeEEEEcC---CCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHH
Confidence 37999999999974 3599999999999 9999999999999999999999998 44555543221
Q ss_pred -------hh----cCCCCCHHHHHHHh----C--chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CC
Q 025114 93 -------EQ----SVDGTSVAEIFKLY----G--EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KG 151 (257)
Q Consensus 93 -------~~----~~~~~~v~e~~~~~----g--~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~ 151 (257)
.+ .+...++.+.+... + .....+...++++.+++.+ +.+..||||++|++.+++++. +|
T Consensus 80 ~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p 159 (277)
T PRK13642 80 RRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRP 159 (277)
T ss_pred hcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 00 12245676666431 1 1112233456778777743 788999999999999998886 79
Q ss_pred cEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceec
Q 025114 152 ISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVS 213 (257)
Q Consensus 152 ~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~ 213 (257)
++++||||+++| +.++.+. |.+++.++|+++.+. .| |++..|.+|++...+++++++.
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~---d~i~~l~~G~i~~~g~~~~~~~ 229 (277)
T PRK13642 160 EIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SS---DRILVMKAGEIIKEAAPSELFA 229 (277)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hC---CEEEEEECCEEEEeCCHHHHhc
Confidence 999999999998 4555544 889999999987754 45 7887888888766666655544
No 202
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.4e-25 Score=187.48 Aligned_cols=152 Identities=21% Similarity=0.301 Sum_probs=124.3
Q ss_pred cceEEecceeeeeCcc-ccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh------CCceecchhhhhh----
Q 025114 26 ASVLESGNVHAPIDEA-QVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL------GYSFFDCDTLIEQ---- 94 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~-~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l------g~~~~d~~~~~~~---- 94 (257)
|++|+++||+..-.++ .+|++|||+|++ ||+.+|+||||||||||.+.|+|.- |.+.+++.++.+.
T Consensus 1 m~~L~I~dLhv~v~~~keILkgvnL~v~~---GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~E 77 (251)
T COG0396 1 MMMLEIKDLHVEVEGKKEILKGVNLTVKE---GEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDE 77 (251)
T ss_pred CceeEEeeeEEEecCchhhhcCcceeEcC---CcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhH
Confidence 5689999999999985 999999999999 9999999999999999999999987 4467777766321
Q ss_pred --------------cCCCCCHHHHHHHhCc---------hHHHHHHHHHHHHhcccC----ccc-cccChhHhHHHHHHH
Q 025114 95 --------------SVDGTSVAEIFKLYGE---------GFFREKETEVLQKLSLMR----QLV-VSTGGGAVTRPINWR 146 (257)
Q Consensus 95 --------------~~~~~~v~e~~~~~g~---------~~~~~~~~~~l~~l~~~~----~~v-~~lsgG~~qr~~~a~ 146 (257)
.++|.++.+++..... ..|.....+.++.+++.+ |.+ ..+|||++.|.++++
T Consensus 78 RAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ 157 (251)
T COG0396 78 RARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQ 157 (251)
T ss_pred HHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHH
Confidence 2257777777654221 245566677888888764 554 559999999999998
Q ss_pred Hhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCC
Q 025114 147 YMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQ 180 (257)
Q Consensus 147 ~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~ 180 (257)
++. +|++.+||||-++| +++++..+.++..++|.
T Consensus 158 ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy 203 (251)
T COG0396 158 LLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHY 203 (251)
T ss_pred HHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecH
Confidence 876 89999999999998 57777778889999997
No 203
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.93 E-value=4.5e-26 Score=191.00 Aligned_cols=151 Identities=22% Similarity=0.188 Sum_probs=114.5
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh------------
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI------------ 92 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~------------ 92 (257)
|+++|+++.|+++.+|+++||+|.+ |++++|+||||||||||+++|+|.+ |.+++++.++.
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNA---GEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEE
Confidence 4789999999999999999999999 9999999999999999999999987 44555554321
Q ss_pred -hh---cCCCCCHHHHHHHhCch--HHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHH
Q 025114 93 -EQ---SVDGTSVAEIFKLYGEG--FFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEA 162 (257)
Q Consensus 93 -~~---~~~~~~v~e~~~~~g~~--~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~ 162 (257)
.+ .+...++.+.+...... .......++++.+++.+ +.+..||||++|++.+++++. +|++++||||+++
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 157 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTA 157 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 11 11235677765432110 00223456788888754 788999999999999998876 7999999999998
Q ss_pred H-----------HHHHHhcCCCCccccCCCC
Q 025114 163 L-----------AQRIAAVGTDSRPLLHQCE 182 (257)
Q Consensus 163 L-----------~~rl~~~g~~~~~~~h~~~ 182 (257)
| +.++++.|.+++.++|+..
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 158 LDKAGVALLAGLLRAHLARGGIVLLTTHQDL 188 (198)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence 8 3444445778899999843
No 204
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.7e-27 Score=205.46 Aligned_cols=178 Identities=18% Similarity=0.197 Sum_probs=128.6
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---------CCceecchhhh-----
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---------GYSFFDCDTLI----- 92 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---------g~~~~d~~~~~----- 92 (257)
.+|+++||++.|+++.+|+++||+|.+ |++++|+|+||||||||+++|+|++ |.+++++..+.
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 80 (252)
T PRK14255 4 KIITSSDVHLFYGKFEALKGIDLDFNQ---NEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80 (252)
T ss_pred ceEEEEeEEEEECCeeEEecceEEEcC---CCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccccccc
Confidence 579999999999988899999999999 9999999999999999999999974 43445443221
Q ss_pred -----------hhc--CCCCCHHHHHHHh----C--c-hHHHHHHHHHHHHhcc-------cCccccccChhHhHHHHHH
Q 025114 93 -----------EQS--VDGTSVAEIFKLY----G--E-GFFREKETEVLQKLSL-------MRQLVVSTGGGAVTRPINW 145 (257)
Q Consensus 93 -----------~~~--~~~~~v~e~~~~~----g--~-~~~~~~~~~~l~~l~~-------~~~~v~~lsgG~~qr~~~a 145 (257)
.+. ....++.+.+... + . ....+...++++.+++ .++.+..|||||+||+.++
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~la 160 (252)
T PRK14255 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIA 160 (252)
T ss_pred HHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHH
Confidence 000 1124677665432 1 1 1112223445666654 2367899999999999999
Q ss_pred HHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccce
Q 025114 146 RYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANAR 211 (257)
Q Consensus 146 ~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~ 211 (257)
+++. +|++++||||+++| ++++.+ +.+++.++|+++.+..+| |++..+.+|++..++++..+
T Consensus 161 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~---d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 161 RVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMHQASRIS---DKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHHHHHHhC---CEEEEEECCEEEEeCCHHHH
Confidence 8876 79999999999988 344433 478899999977666666 77767777766555544433
No 205
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.93 E-value=9.6e-28 Score=219.09 Aligned_cols=176 Identities=20% Similarity=0.189 Sum_probs=138.2
Q ss_pred cceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecch----hhh--------h--
Q 025114 32 GNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCD----TLI--------E-- 93 (257)
Q Consensus 32 ~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~----~~~--------~-- 93 (257)
.++.+.|+...+|+|+||+|++ |++++|+|+||||||||+|+|+|++ |.+++++. ++. +
T Consensus 28 ~~~~~~~g~~~~l~~vsf~i~~---Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r 104 (382)
T TIGR03415 28 EEILDETGLVVGVANASLDIEE---GEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLR 104 (382)
T ss_pred HHHHHhhCCEEEEEeeEEEEcC---CCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHh
Confidence 4567888888999999999999 9999999999999999999999998 55677663 110 0
Q ss_pred -h----------cCCCCCHHHHHHHh----C--chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCc
Q 025114 94 -Q----------SVDGTSVAEIFKLY----G--EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGI 152 (257)
Q Consensus 94 -~----------~~~~~~v~e~~~~~----g--~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~ 152 (257)
. .+...|+.+++... + ....+.+..++++.+++.+ +.+.+||||++||+.+++++. +|+
T Consensus 105 ~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 105 THRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred cCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 0 12346788877542 1 1222345567889998864 789999999999999998887 799
Q ss_pred EEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceec
Q 025114 153 SVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVS 213 (257)
Q Consensus 153 vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~ 213 (257)
+++||||+++| +.++.+. +.++++++||++.+..+| |++..|.+|++...|+++++++
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~---DrI~vl~~G~iv~~g~~~ei~~ 254 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIG---NRIAIMEGGRIIQHGTPEEIVL 254 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC---CEEEEEECCEEEEecCHHHHhh
Confidence 99999999998 3455443 789999999988887887 8888888888887777766653
No 206
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.93 E-value=3.2e-26 Score=195.27 Aligned_cols=158 Identities=24% Similarity=0.280 Sum_probs=116.5
Q ss_pred eEEecceeeeeCc-------cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecch----hhh
Q 025114 28 VLESGNVHAPIDE-------AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCD----TLI 92 (257)
Q Consensus 28 ~l~~~~l~~~~~~-------~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~----~~~ 92 (257)
||+++|+++.|+. +.+|+|+||+|.+ |++++|+|+||||||||+++|+|++ |.++++++ ++.
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~---Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~ 77 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNA---GECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLA 77 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchh
Confidence 4889999999963 4699999999999 9999999999999999999999997 55566521 110
Q ss_pred -----------hh----------cCCCCCHHHHHHH----hCc--hHHHHHHHHHHHHhcccC----ccccccChhHhHH
Q 025114 93 -----------EQ----------SVDGTSVAEIFKL----YGE--GFFREKETEVLQKLSLMR----QLVVSTGGGAVTR 141 (257)
Q Consensus 93 -----------~~----------~~~~~~v~e~~~~----~g~--~~~~~~~~~~l~~l~~~~----~~v~~lsgG~~qr 141 (257)
.. .+...++.+++.. .+. ....+...++++.+++.+ +.+..||||++|+
T Consensus 78 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qr 157 (224)
T TIGR02324 78 QASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQR 157 (224)
T ss_pred hcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHH
Confidence 00 1123466665542 121 122334456788887743 5789999999999
Q ss_pred HHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhh
Q 025114 142 PINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYT 188 (257)
Q Consensus 142 ~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~ 188 (257)
+.+++++. +|++++||||+++| +++++..|.+++.++|+.+.+..+|
T Consensus 158 l~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~ 216 (224)
T TIGR02324 158 VNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVA 216 (224)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc
Confidence 99998876 79999999999998 4555545788999999954443343
No 207
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.93 E-value=1.7e-27 Score=205.00 Aligned_cols=173 Identities=20% Similarity=0.248 Sum_probs=128.3
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-----------
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE----------- 93 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~----------- 93 (257)
|+++|+++.|+++++|+++||++.+ |++++|+|+||||||||+++|+|.+ |...+++.++..
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~---Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~ 77 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPT---GSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFV 77 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEE
Confidence 4789999999988999999999999 9999999999999999999999987 444555433210
Q ss_pred ----hcCCCCCHHHHHHHhCc------hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECC
Q 025114 94 ----QSVDGTSVAEIFKLYGE------GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVP 159 (257)
Q Consensus 94 ----~~~~~~~v~e~~~~~g~------~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep 159 (257)
..+.+.++.+++..... ....+...++++.+++.+ +.+..+|+|++|++.+++++. +|++++||||
T Consensus 78 ~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP 157 (237)
T TIGR00968 78 FQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEP 157 (237)
T ss_pred ecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 11234577776643211 112233456788887753 778999999999999998876 7999999999
Q ss_pred HHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhc
Q 025114 160 LEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN 207 (257)
Q Consensus 160 ~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~ 207 (257)
+++| +.++.+. +.+++.++|+++.+..+| |++..+.+|++...++
T Consensus 158 ~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~---d~i~~l~~g~i~~~~~ 214 (237)
T TIGR00968 158 FGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVA---DRIVVMSNGKIEQIGS 214 (237)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhc---CEEEEEECCEEEEecC
Confidence 9998 3444444 788999999976666665 6766666665543333
No 208
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.93 E-value=1.6e-27 Score=216.60 Aligned_cols=172 Identities=20% Similarity=0.173 Sum_probs=129.4
Q ss_pred ceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh----------------
Q 025114 33 NVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI---------------- 92 (257)
Q Consensus 33 ~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~---------------- 92 (257)
||+|.|+++.+ ++||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 4 ~l~~~~~~~~~--~isl~i~~---Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGDFSL--DADFTLPG---QGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECCEEE--EEEEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 89999988764 89999999 9999999999999999999999997 44555553321
Q ss_pred --hh---cCCCCCHHHHHHHhCc----hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECC
Q 025114 93 --EQ---SVDGTSVAEIFKLYGE----GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVP 159 (257)
Q Consensus 93 --~~---~~~~~~v~e~~~~~g~----~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep 159 (257)
.+ .+.++++.+++..... .....+..++++.+++.+ +.+..|||||+||+.+++++. +|.+++||||
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEP 158 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEP 158 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 00 1235688887754211 111234567888888854 789999999999999998886 7999999999
Q ss_pred HHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 160 LEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 160 ~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
+++| ++++... |.+++.++|+++.+..+| |++..|.+|++...++++++.
T Consensus 159 ts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~---d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 159 LAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLA---DRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred CcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC---CEEEEEeCCEEEEECCHHHHh
Confidence 9998 3445444 788999999987777776 787777777765555544433
No 209
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.1e-27 Score=208.06 Aligned_cols=174 Identities=18% Similarity=0.196 Sum_probs=125.5
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC---------Cceecchhhh----
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG---------YSFFDCDTLI---- 92 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg---------~~~~d~~~~~---- 92 (257)
.++|+++||++.|+++.+|+++||+|.+ |++++|+|+||||||||+++|+|++. .+.+++..+.
T Consensus 37 ~~~l~i~~l~~~~~~~~il~~is~~i~~---Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 37 ETVIEARDLNVFYGDEQALDDVSMDIPE---NQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113 (285)
T ss_pred CceEEEEEEEEEECCEeeEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 4689999999999988899999999999 99999999999999999999999863 3344443221
Q ss_pred ------------hhc--CCCCCHHHHHHHh----Cc-hHHHHHHHHHHHHhccc-------CccccccChhHhHHHHHHH
Q 025114 93 ------------EQS--VDGTSVAEIFKLY----GE-GFFREKETEVLQKLSLM-------RQLVVSTGGGAVTRPINWR 146 (257)
Q Consensus 93 ------------~~~--~~~~~v~e~~~~~----g~-~~~~~~~~~~l~~l~~~-------~~~v~~lsgG~~qr~~~a~ 146 (257)
.+. +...++.+.+... +. ....+...++++.+++. ++.+..|||||+||+.+++
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAr 193 (285)
T PRK14254 114 DPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIAR 193 (285)
T ss_pred chHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHH
Confidence 000 1123677665432 11 11233455677777752 3778999999999999998
Q ss_pred Hhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHH-HHHHHHHHHHh
Q 025114 147 YMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLS-TLWEERGEAYA 206 (257)
Q Consensus 147 ~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~-~l~~~r~~~y~ 206 (257)
++. +|.+++||||+++| ++++++ +.+++.++|+++.+..+| +++. .+.+|++..++
T Consensus 194 aL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~~i~~~~---dri~v~l~~G~i~~~g 262 (285)
T PRK14254 194 AIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQQAARIS---DKTAVFLTGGELVEFD 262 (285)
T ss_pred HHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHhhc---CEEEEEeeCCEEEEeC
Confidence 876 79999999999998 344443 468899999976665555 6542 33455543333
No 210
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.93 E-value=8.7e-26 Score=190.05 Aligned_cols=149 Identities=23% Similarity=0.265 Sum_probs=113.6
Q ss_pred ecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh-----------h--
Q 025114 31 SGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI-----------E-- 93 (257)
Q Consensus 31 ~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~-----------~-- 93 (257)
++||++.|+++++|+++||++.+ |++++|+||||||||||+++|+|++ |.+++++.++. .
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEK---GKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeC---CcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 47999999988999999999999 9999999999999999999999987 44555554310 0
Q ss_pred --------hcCCCCCHHHHHHHhC------chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEE
Q 025114 94 --------QSVDGTSVAEIFKLYG------EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVW 155 (257)
Q Consensus 94 --------~~~~~~~v~e~~~~~g------~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~ 155 (257)
..+...++.+++.... .....+...++++.+++.+ +.+..||||++||+.+++++. +|++++
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~lll 157 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLIL 157 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 0112467777654311 1112334457788888753 788999999999999998886 799999
Q ss_pred EECCHHHH-----------HHHHHhcCCCCccccCCCC
Q 025114 156 LDVPLEAL-----------AQRIAAVGTDSRPLLHQCE 182 (257)
Q Consensus 156 LDep~~~L-----------~~rl~~~g~~~~~~~h~~~ 182 (257)
||||+++| ++++.+.+.+++.++|+++
T Consensus 158 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 195 (206)
T TIGR03608 158 ADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE 195 (206)
T ss_pred EeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 99999998 3444445778889999843
No 211
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.8e-27 Score=205.45 Aligned_cols=166 Identities=19% Similarity=0.197 Sum_probs=120.9
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---------CCceecchhhh----
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---------GYSFFDCDTLI---- 92 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---------g~~~~d~~~~~---- 92 (257)
.++|+++||++.|+++++|+|+||+|++ |++++|+|+||||||||+|+|+|++ |.+++++.++.
T Consensus 8 ~~~l~i~~v~~~~~~~~il~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 84 (264)
T PRK14243 8 ETVLRTENLNVYYGSFLAVKNVWLDIPK---NQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV 84 (264)
T ss_pred ceEEEEeeeEEEECCEEEeecceEEEcC---CCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccccc
Confidence 4589999999999988899999999999 9999999999999999999999975 33445543221
Q ss_pred -----h-------hc--CCCCCHHHHHHHhCc-----hHHHHHHHHHHHHhcc-------cCccccccChhHhHHHHHHH
Q 025114 93 -----E-------QS--VDGTSVAEIFKLYGE-----GFFREKETEVLQKLSL-------MRQLVVSTGGGAVTRPINWR 146 (257)
Q Consensus 93 -----~-------~~--~~~~~v~e~~~~~g~-----~~~~~~~~~~l~~l~~-------~~~~v~~lsgG~~qr~~~a~ 146 (257)
. +. +...++.+.+..... ....+...++++.+++ .++.+..|||||+||+.+++
T Consensus 85 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~lar 164 (264)
T PRK14243 85 DPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIAR 164 (264)
T ss_pred ChHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHH
Confidence 0 00 112366666543211 1112223345565554 23678899999999999998
Q ss_pred Hhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHH
Q 025114 147 YMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLW 198 (257)
Q Consensus 147 ~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~ 198 (257)
++. +|++++||||+++| +.++.+ +.+++.++|+++.+..+| |++..|.
T Consensus 165 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~~~~~~~---d~v~~l~ 224 (264)
T PRK14243 165 AIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQQAARVS---DMTAFFN 224 (264)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhC---CEEEEEe
Confidence 876 79999999999988 334433 468899999977777776 7765554
No 212
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.4e-26 Score=194.00 Aligned_cols=172 Identities=20% Similarity=0.192 Sum_probs=120.2
Q ss_pred CcceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCC----------ceecchhhh--
Q 025114 25 SASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGY----------SFFDCDTLI-- 92 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~----------~~~d~~~~~-- 92 (257)
++++|+++||++.|+++++|+|||++|++ ||..+|+||||||||||+++++|...+ .+-.++...
T Consensus 28 ~~~li~l~~v~v~r~gk~iL~~isW~V~~---ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~el 104 (257)
T COG1119 28 NEPLIELKNVSVRRNGKKILGDLSWQVNP---GEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFEL 104 (257)
T ss_pred CcceEEecceEEEECCEeeccccceeecC---CCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHH
Confidence 46789999999999999999999999999 999999999999999999999997732 121122111
Q ss_pred hhcC------------CCCCHHHHH-----HHhCc------hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHH
Q 025114 93 EQSV------------DGTSVAEIF-----KLYGE------GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWR 146 (257)
Q Consensus 93 ~~~~------------~~~~v~e~~-----~~~g~------~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~ 146 (257)
.+.. ...++.+++ ...|- .....+...+++.+++.+ +++.+||-|+++++.+||
T Consensus 105 rk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaR 184 (257)
T COG1119 105 RKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIAR 184 (257)
T ss_pred HHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHH
Confidence 1111 011222221 11110 111234456788888764 899999999999999998
Q ss_pred Hhh-CCcEEEEECCHHHH--------HHHHHh---c--CCCCccccCCCCCCchhhHHHHHHHHHHHHHH
Q 025114 147 YMQ-KGISVWLDVPLEAL--------AQRIAA---V--GTDSRPLLHQCESGDAYTEALNRLSTLWEERG 202 (257)
Q Consensus 147 ~l~-~~~vl~LDep~~~L--------~~rl~~---~--g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~ 202 (257)
++. +|.+++||||+++| ++++.. . +.+.++++|+.+++..-. +++..+.+|++
T Consensus 185 ALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~---th~lll~~g~v 251 (257)
T COG1119 185 ALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCF---THRLLLKEGEV 251 (257)
T ss_pred HHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhccccc---ceEEEeeCCce
Confidence 886 79999999999988 233332 2 556889999976655432 55545555544
No 213
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.93 E-value=4.7e-27 Score=203.86 Aligned_cols=171 Identities=22% Similarity=0.284 Sum_probs=120.8
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhh--h----CCceecchhhhh------
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGV--L----GYSFFDCDTLIE------ 93 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~--l----g~~~~d~~~~~~------ 93 (257)
.++|+++||++.|+++.+|+++||++.+ |++++|+|+||||||||+++|+|+ + |.+++++..+..
T Consensus 5 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T CHL00131 5 KPILEIKNLHASVNENEILKGLNLSINK---GEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEER 81 (252)
T ss_pred CceEEEEeEEEEeCCEEeeecceeEEcC---CcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhh
Confidence 3479999999999888899999999999 999999999999999999999997 2 555665543211
Q ss_pred ---------h---cCCCCCHHHHHHHhCc-------------hHHHHHHHHHHHHhccc----Ccccc-ccChhHhHHHH
Q 025114 94 ---------Q---SVDGTSVAEIFKLYGE-------------GFFREKETEVLQKLSLM----RQLVV-STGGGAVTRPI 143 (257)
Q Consensus 94 ---------~---~~~~~~v~e~~~~~g~-------------~~~~~~~~~~l~~l~~~----~~~v~-~lsgG~~qr~~ 143 (257)
+ .+.+.++.+.+..... ........++++.+++. ++.+. .||||++||+.
T Consensus 82 ~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~ 161 (252)
T CHL00131 82 AHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNE 161 (252)
T ss_pred heeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHH
Confidence 0 0112345554332100 01123345678887775 25565 59999999999
Q ss_pred HHHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchh-hHHHHHHHHHHHHHH
Q 025114 144 NWRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAY-TEALNRLSTLWEERG 202 (257)
Q Consensus 144 ~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~-~~~~~~v~~l~~~r~ 202 (257)
+++++. +|.+++||||+++| ++++.+.|.++++++|+++.+..+ | |++..+.+|++
T Consensus 162 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~---d~i~~l~~G~i 230 (252)
T CHL00131 162 ILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKP---DYVHVMQNGKI 230 (252)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhC---CEEEEEeCCEE
Confidence 998876 79999999999998 344444578899999996544333 3 45544444443
No 214
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.93 E-value=3.6e-27 Score=205.08 Aligned_cols=173 Identities=17% Similarity=0.179 Sum_probs=124.0
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh--------CCceecchhhh-------
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL--------GYSFFDCDTLI------- 92 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l--------g~~~~d~~~~~------- 92 (257)
+|+++|+++.| ++.+|+++||+|.+ |++++|+|+||||||||+++|+|++ |.+++++.++.
T Consensus 4 ~l~~~~l~~~~-~~~il~~vsl~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 79 (254)
T PRK10418 4 QIELRNIALQA-AQPLVHGVSLTLQR---GRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGR 79 (254)
T ss_pred EEEEeCeEEEe-ccceecceEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccc
Confidence 68999999999 66899999999999 9999999999999999999999986 33455553321
Q ss_pred -----hhc----C-CCCCHHHHHHH----hCchHHHHHHHHHHHHhccc------CccccccChhHhHHHHHHHHhh-CC
Q 025114 93 -----EQS----V-DGTSVAEIFKL----YGEGFFREKETEVLQKLSLM------RQLVVSTGGGAVTRPINWRYMQ-KG 151 (257)
Q Consensus 93 -----~~~----~-~~~~v~e~~~~----~g~~~~~~~~~~~l~~l~~~------~~~v~~lsgG~~qr~~~a~~l~-~~ 151 (257)
.+. + ...++.+.+.. .+.....+...++++.+++. ++.+..||||++|++.+++++. +|
T Consensus 80 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p 159 (254)
T PRK10418 80 KIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEA 159 (254)
T ss_pred eEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCC
Confidence 000 1 01233333221 12211223456678888874 3678999999999999998876 79
Q ss_pred cEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhc
Q 025114 152 ISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN 207 (257)
Q Consensus 152 ~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~ 207 (257)
++++||||+++| ++++... |.++++++|+++.+..+| |++..+.+|++...++
T Consensus 160 ~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~---d~v~~l~~G~i~~~~~ 224 (254)
T PRK10418 160 PFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLA---DDVAVMSHGRIVEQGD 224 (254)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhC---CEEEEEECCEEEEecC
Confidence 999999999998 3444433 788999999976655555 6665666665443333
No 215
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.8e-27 Score=206.24 Aligned_cols=178 Identities=17% Similarity=0.207 Sum_probs=129.0
Q ss_pred CcceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC----Cceecc------hhhh--
Q 025114 25 SASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG----YSFFDC------DTLI-- 92 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg----~~~~d~------~~~~-- 92 (257)
..++|+++|+++.|+++.+|+|+||++.+ |++++|+|+||||||||+++|+|++. ...+++ .++.
T Consensus 7 ~~~~i~~~~~~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~ 83 (257)
T PRK14246 7 AEDVFNISRLYLYINDKAILKDITIKIPN---NSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQI 83 (257)
T ss_pred hhhheeeeeEEEecCCceeEeceEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccC
Confidence 34689999999999999999999999999 99999999999999999999999862 222222 2210
Q ss_pred ------------hh---cCCCCCHHHHHHHh----C---chHHHHHHHHHHHHhccc-------CccccccChhHhHHHH
Q 025114 93 ------------EQ---SVDGTSVAEIFKLY----G---EGFFREKETEVLQKLSLM-------RQLVVSTGGGAVTRPI 143 (257)
Q Consensus 93 ------------~~---~~~~~~v~e~~~~~----g---~~~~~~~~~~~l~~l~~~-------~~~v~~lsgG~~qr~~ 143 (257)
.+ .+.+.++.+.+... + +...+....++++.+++. .+.+..||+|++||..
T Consensus 84 ~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~ 163 (257)
T PRK14246 84 DAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLT 163 (257)
T ss_pred CHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHH
Confidence 00 12346777766532 1 111223345677777763 3678899999999999
Q ss_pred HHHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccc
Q 025114 144 NWRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN 209 (257)
Q Consensus 144 ~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~ 209 (257)
+++++. +|++++||||+++| +.++.+ +.++++++|+.+.+..+| +++..+.+|++..+++++
T Consensus 164 laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~~~~~~~---d~v~~l~~g~i~~~g~~~ 237 (257)
T PRK14246 164 IARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQQVARVA---DYVAFLYNGELVEWGSSN 237 (257)
T ss_pred HHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHHHHHHhC---CEEEEEECCEEEEECCHH
Confidence 998876 79999999999998 334433 578999999966555555 666566666554444443
No 216
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.7e-27 Score=204.35 Aligned_cols=176 Identities=20% Similarity=0.234 Sum_probs=125.5
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---------CCceecchhhhh---
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---------GYSFFDCDTLIE--- 93 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---------g~~~~d~~~~~~--- 93 (257)
|.+|+++||++.|+++.+|+++||+|.+ |++++|+|+||||||||+++|+|++ |.+++++.++..
T Consensus 1 ~~~l~~~~v~~~~~~~~~l~~~s~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 77 (250)
T PRK14266 1 MYRIEVENLNTYFDDAHILKNVNLDIPK---NSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77 (250)
T ss_pred CcEEEEEeEEEEeCCeEEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccc
Confidence 4579999999999988899999999999 9999999999999999999999975 334555533210
Q ss_pred ------h---------cCCCCCHHHHHHHh----C---chHHHHHHHHHHHHhccc-------CccccccChhHhHHHHH
Q 025114 94 ------Q---------SVDGTSVAEIFKLY----G---EGFFREKETEVLQKLSLM-------RQLVVSTGGGAVTRPIN 144 (257)
Q Consensus 94 ------~---------~~~~~~v~e~~~~~----g---~~~~~~~~~~~l~~l~~~-------~~~v~~lsgG~~qr~~~ 144 (257)
. .....++.+.+... + ....++...++++.+++. ++.+..||||++|++.+
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~l 157 (250)
T PRK14266 78 DVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCI 157 (250)
T ss_pred cHHHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHH
Confidence 0 01233666665431 1 111223344566666642 36789999999999999
Q ss_pred HHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcc
Q 025114 145 WRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANA 208 (257)
Q Consensus 145 a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~ 208 (257)
++++. +|++++||||+++| +++++ .+.+++.++|+++.+..+| +++..+.+|++...+++
T Consensus 158 aral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~~~---~~i~~l~~G~i~~~g~~ 229 (250)
T PRK14266 158 ARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-EDYTIVIVTHNMQQATRVS---KYTSFFLNGEIIESGLT 229 (250)
T ss_pred HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEECCHHHHHhhc---CEEEEEECCeEEEeCCH
Confidence 98876 79999999999988 34443 3678899999976555555 55544555554444433
No 217
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=2.3e-27 Score=204.03 Aligned_cols=171 Identities=20% Similarity=0.244 Sum_probs=125.7
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-----------
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE----------- 93 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~----------- 93 (257)
|+++|+++.|+++ +|+++||+|.+ |++++|+|+||||||||+++|+|++ |..++++.++..
T Consensus 1 l~~~~l~~~~~~~-~l~~is~~i~~---Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~ 76 (235)
T cd03299 1 LKVENLSKDWKEF-KLKNVSLEVER---GDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYV 76 (235)
T ss_pred CeeEeEEEEeCCc-eeeeeEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEE
Confidence 4689999999875 89999999999 9999999999999999999999987 444555533211
Q ss_pred ----hcCCCCCHHHHHHHhC------chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECC
Q 025114 94 ----QSVDGTSVAEIFKLYG------EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVP 159 (257)
Q Consensus 94 ----~~~~~~~v~e~~~~~g------~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep 159 (257)
..+...++.+.+.... .....+...++++.+++.+ +.+..||||++||+.+++++. +|++++||||
T Consensus 77 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 156 (235)
T cd03299 77 PQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEP 156 (235)
T ss_pred eecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCC
Confidence 0122457777664321 1112233456788888753 788999999999999998876 7999999999
Q ss_pred HHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHh
Q 025114 160 LEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYA 206 (257)
Q Consensus 160 ~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~ 206 (257)
+++| ++++... +.+++.++|+++.+..+| |++..+.+|++..++
T Consensus 157 t~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~---d~i~~l~~G~i~~~~ 212 (235)
T cd03299 157 FSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALA---DKVAIMLNGKLIQVG 212 (235)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC---CEEEEEECCEEEEec
Confidence 9998 3444433 789999999976655555 666556555544333
No 218
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.1e-27 Score=206.61 Aligned_cols=179 Identities=17% Similarity=0.215 Sum_probs=128.6
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---------CCceecchhhh----
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---------GYSFFDCDTLI---- 92 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---------g~~~~d~~~~~---- 92 (257)
.++|+++|+++.|+++.+|+++||+|++ |++++|+|+||||||||+++|+|++ |.+.+++.++.
T Consensus 22 ~~~l~~~~l~~~~~~~~il~~vsl~i~~---Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 98 (271)
T PRK14238 22 KVVFDTQNLNLWYGEDHALKNINLDIHE---NEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98 (271)
T ss_pred ceEEEEeeeEEEECCcceeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence 4589999999999988899999999999 9999999999999999999999986 34455553321
Q ss_pred -----hh-------c--CCCCCHHHHHHHh----Cch---HHHHHHHHHHHHhcc-------cCccccccChhHhHHHHH
Q 025114 93 -----EQ-------S--VDGTSVAEIFKLY----GEG---FFREKETEVLQKLSL-------MRQLVVSTGGGAVTRPIN 144 (257)
Q Consensus 93 -----~~-------~--~~~~~v~e~~~~~----g~~---~~~~~~~~~l~~l~~-------~~~~v~~lsgG~~qr~~~ 144 (257)
.. . +...++.+.+... +.. .......++++.+++ .++.+..||||++||+.+
T Consensus 99 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~l 178 (271)
T PRK14238 99 SVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCI 178 (271)
T ss_pred cHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHH
Confidence 00 0 1124677765431 110 111222344544432 136789999999999999
Q ss_pred HHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccce
Q 025114 145 WRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANAR 211 (257)
Q Consensus 145 a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~ 211 (257)
++++. +|.+++||||+++| ++++.+ +.+++.++|+++.+..+| |++..|.+|++..+++++++
T Consensus 179 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~i~~~~---d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 179 ARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQAARIS---DKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHHHHHhC---CEEEEEECCEEEEeCCHHHH
Confidence 98876 79999999999998 344433 678899999977666666 77767777766555554433
No 219
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=5.5e-27 Score=203.44 Aligned_cols=174 Identities=18% Similarity=0.150 Sum_probs=126.3
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---------CCceecchhhhh------
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---------GYSFFDCDTLIE------ 93 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---------g~~~~d~~~~~~------ 93 (257)
-+++|+++.|+++.+|+++||+|.+ |++++|+|+||||||||+++|+|+. |.+++++..+..
T Consensus 6 ~~~~~l~~~~~~~~~l~~is~~i~~---Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGSKQILFDINLDIYK---REVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECCeeeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 3689999999988999999999999 9999999999999999999999985 334555433210
Q ss_pred ----------hc--CCCCCHHHHHHHh----Cc----hHHHHHHHHHHHHhcccC-------ccccccChhHhHHHHHHH
Q 025114 94 ----------QS--VDGTSVAEIFKLY----GE----GFFREKETEVLQKLSLMR-------QLVVSTGGGAVTRPINWR 146 (257)
Q Consensus 94 ----------~~--~~~~~v~e~~~~~----g~----~~~~~~~~~~l~~l~~~~-------~~v~~lsgG~~qr~~~a~ 146 (257)
+. ....++.+.+... +. ........++++.+++.+ +.+..|||||+|++.+++
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar 162 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIAR 162 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHH
Confidence 00 1123666655432 10 112233456788887742 578899999999999998
Q ss_pred Hhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccc
Q 025114 147 YMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN 209 (257)
Q Consensus 147 ~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~ 209 (257)
++. +|++++||||+++| ++++. .+.+++.++|+++.+..+| |++..|.+|++...++++
T Consensus 163 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~---d~i~~l~~G~i~~~~~~~ 233 (251)
T PRK14244 163 AIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMKQAKKVS---DRVAFFQSGRIVEYNTTQ 233 (251)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhc---CEEEEEECCEEEEeCCHH
Confidence 876 79999999999988 34443 3788999999977666666 777666666654444433
No 220
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.8e-27 Score=224.06 Aligned_cols=169 Identities=19% Similarity=0.191 Sum_probs=126.7
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchh-h--hhh---cCC
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDT-L--IEQ---SVD 97 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~-~--~~~---~~~ 97 (257)
||+++|+++.|+++++|+++||+|.+ |++++|+||||||||||+|+|+|++ |.+.+++.. + ..+ .+.
T Consensus 1 ml~i~~ls~~~~~~~il~~vsl~i~~---Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~ 77 (530)
T PRK15064 1 MLSTANITMQFGAKPLFENISVKFGG---GNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFE 77 (530)
T ss_pred CEEEEEEEEEeCCcEeEeCCEEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCC
Confidence 48999999999988999999999999 9999999999999999999999987 334444321 1 011 122
Q ss_pred CCCHHHHHHHhCc--------------------------------------hHHHHHHHHHHHHhcccC----ccccccC
Q 025114 98 GTSVAEIFKLYGE--------------------------------------GFFREKETEVLQKLSLMR----QLVVSTG 135 (257)
Q Consensus 98 ~~~v~e~~~~~g~--------------------------------------~~~~~~~~~~l~~l~~~~----~~v~~ls 135 (257)
..++.+.+..... ...+.+..++++.+++.+ +.+..||
T Consensus 78 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS 157 (530)
T PRK15064 78 EFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVA 157 (530)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcC
Confidence 4566555432100 001233456788888753 5689999
Q ss_pred hhHhHHHHHHHHhh-CCcEEEEECCHHHH--------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHH
Q 025114 136 GGAVTRPINWRYMQ-KGISVWLDVPLEAL--------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERG 202 (257)
Q Consensus 136 gG~~qr~~~a~~l~-~~~vl~LDep~~~L--------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~ 202 (257)
|||+||+.+++++. +|++++||||+++| .+.+.+.+.++++++||++.+..+| |++..|.+|++
T Consensus 158 gGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~---d~i~~l~~g~i 230 (530)
T PRK15064 158 PGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVC---THMADLDYGEL 230 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhc---ceEEEEeCCEE
Confidence 99999999998876 79999999999998 2344445789999999987777776 77777776665
No 221
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.93 E-value=3e-27 Score=221.15 Aligned_cols=179 Identities=16% Similarity=0.153 Sum_probs=132.7
Q ss_pred cceEEecceeeeeCc---cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh----hh
Q 025114 26 ASVLESGNVHAPIDE---AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI----EQ 94 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~---~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~----~~ 94 (257)
.++++++||++.|++ +.+|+++||+|.+ |++++|+||||||||||+++|+|++ |.+++++.... ..
T Consensus 19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~---GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~ 95 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPE---GEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSG 95 (549)
T ss_pred cceeEEEEEEEecCCCccceEEeeeEEEEeC---CCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccc
Confidence 457999999999977 4699999999999 9999999999999999999999997 44555553311 01
Q ss_pred cCCCCCHHHHHHHh----Cc--hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-
Q 025114 95 SVDGTSVAEIFKLY----GE--GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL- 163 (257)
Q Consensus 95 ~~~~~~v~e~~~~~----g~--~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L- 163 (257)
.....++.+.+... +. ....+...++++.+++.+ +.+..||||++||+.+|+++. +|.+++||||+++|
T Consensus 96 l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD 175 (549)
T PRK13545 96 LNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGD 175 (549)
T ss_pred cCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCC
Confidence 12245777776432 11 112233446778887754 789999999999999998876 79999999999998
Q ss_pred ----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccc
Q 025114 164 ----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANA 210 (257)
Q Consensus 164 ----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~ 210 (257)
+++++..|.+++.++|+++.+..+| |++..|.+|++..++++++
T Consensus 176 ~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~---DrIivL~~GkIv~~G~~~e 229 (549)
T PRK13545 176 QTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFC---TKALWLHYGQVKEYGDIKE 229 (549)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhC---CEEEEEECCEEEEECCHHH
Confidence 3344445788999999977666666 6766666666555554433
No 222
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.1e-27 Score=223.54 Aligned_cols=169 Identities=18% Similarity=0.205 Sum_probs=127.5
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhh----------
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTL---------- 91 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~---------- 91 (257)
.++|+++|+++.|+ .+|+|+||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++
T Consensus 263 ~~~l~~~~l~~~~~--~~l~~isl~i~~---Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~ 337 (510)
T PRK09700 263 ETVFEVRNVTSRDR--KKVRDISFSVCR---GEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVK 337 (510)
T ss_pred CcEEEEeCccccCC--CcccceeEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHH
Confidence 35799999999874 389999999999 9999999999999999999999987 4455555321
Q ss_pred -----hhh------cCCCCCHHHHHHHhC---------------chHHHHHHHHHHHHhccc-C---ccccccChhHhHH
Q 025114 92 -----IEQ------SVDGTSVAEIFKLYG---------------EGFFREKETEVLQKLSLM-R---QLVVSTGGGAVTR 141 (257)
Q Consensus 92 -----~~~------~~~~~~v~e~~~~~g---------------~~~~~~~~~~~l~~l~~~-~---~~v~~lsgG~~qr 141 (257)
+.+ .+...++.+.+.... ....+....++++.+++. + +++..|||||+||
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 417 (510)
T PRK09700 338 KGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQK 417 (510)
T ss_pred CCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHH
Confidence 111 112356777654310 001122345788888885 3 7899999999999
Q ss_pred HHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHH
Q 025114 142 PINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERG 202 (257)
Q Consensus 142 ~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~ 202 (257)
+.+|+++. +|.+++|||||++| +++++..|.+++.++||++.+..+| |++..+.+|++
T Consensus 418 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~---d~i~~l~~G~i 487 (510)
T PRK09700 418 VLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVC---DRIAVFCEGRL 487 (510)
T ss_pred HHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhC---CEEEEEECCEE
Confidence 99998886 79999999999998 4555555889999999987777777 77766666654
No 223
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.93 E-value=1.9e-27 Score=196.57 Aligned_cols=145 Identities=27% Similarity=0.359 Sum_probs=107.5
Q ss_pred EecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhhhcCCCCCHHHHH
Q 025114 30 ESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIEQSVDGTSVAEIF 105 (257)
Q Consensus 30 ~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~~~~~~~~v~e~~ 105 (257)
+++|+++.|+++.+|+++||++.+ |++++|+||||||||||+++|+|++ |.+++++.++. ..+...+.
T Consensus 1 ~~~~l~~~~~~~~~l~~~~~~i~~---G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~-----~~~~~~~~ 72 (180)
T cd03214 1 EVENLSVGYGGRTVLDDLSLSIEA---GEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLA-----SLSPKELA 72 (180)
T ss_pred CeeEEEEEECCeeeEeeeEEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC-----cCCHHHHH
Confidence 478999999988899999999999 9999999999999999999999987 44455544321 11222111
Q ss_pred HHhCchHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhc
Q 025114 106 KLYGEGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAV 170 (257)
Q Consensus 106 ~~~g~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~ 170 (257)
...+ + ..++++.+++.+ +.+..||||++||+.+++++. +|++++||||+++| +.+++..
T Consensus 73 ~~i~--~----~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~ 146 (180)
T cd03214 73 RKIA--Y----VPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARE 146 (180)
T ss_pred HHHh--H----HHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh
Confidence 1111 0 111667777653 678999999999999998776 79999999999988 3444444
Q ss_pred -CCCCccccCCCCCCchhh
Q 025114 171 -GTDSRPLLHQCESGDAYT 188 (257)
Q Consensus 171 -g~~~~~~~h~~~~~~~~~ 188 (257)
+.+++.++|+++.+..+|
T Consensus 147 ~~~tiii~sh~~~~~~~~~ 165 (180)
T cd03214 147 RGKTVVMVLHDLNLAARYA 165 (180)
T ss_pred cCCEEEEEeCCHHHHHHhC
Confidence 678899999965443333
No 224
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.93 E-value=5.4e-27 Score=198.74 Aligned_cols=164 Identities=16% Similarity=0.208 Sum_probs=120.5
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-----------
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE----------- 93 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~----------- 93 (257)
++++||++.|+. +++++||++.+ |++++|+||||||||||+|+|+|++ |.+++++.++..
T Consensus 1 ~~~~~l~~~~~~--~~~~~s~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v 75 (213)
T TIGR01277 1 LALDKVRYEYEH--LPMEFDLNVAD---GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSML 75 (213)
T ss_pred CeEEeeeEEeCC--cceeeEEEEeC---CcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEE
Confidence 478999999974 57899999999 9999999999999999999999987 445665543211
Q ss_pred ----hcCCCCCHHHHHHHhC--c----hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECC
Q 025114 94 ----QSVDGTSVAEIFKLYG--E----GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVP 159 (257)
Q Consensus 94 ----~~~~~~~v~e~~~~~g--~----~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep 159 (257)
..+.+.++.+.+.... . ...+....++++.+++.+ +.+..||||++||+.+++++. +|++++||||
T Consensus 76 ~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 155 (213)
T TIGR01277 76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEP 155 (213)
T ss_pred eccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 0123467877764311 0 011234456788888753 788999999999999998776 7999999999
Q ss_pred HHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHH
Q 025114 160 LEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEE 200 (257)
Q Consensus 160 ~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~ 200 (257)
+++| ++++.+. +.++++++|+.+.+..+| |++..|.+|
T Consensus 156 t~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~---d~v~~l~~g 205 (213)
T TIGR01277 156 FSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIA---SQIAVVSQG 205 (213)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhc---CeEEEEECC
Confidence 9998 3444433 788999999965544444 555444444
No 225
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.93 E-value=3e-27 Score=204.89 Aligned_cols=172 Identities=22% Similarity=0.202 Sum_probs=125.9
Q ss_pred EecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---CCceecchhhh--------------
Q 025114 30 ESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---GYSFFDCDTLI-------------- 92 (257)
Q Consensus 30 ~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---g~~~~d~~~~~-------------- 92 (257)
+++||++. .+|+++||++++ |++++|+|+||||||||+++|+|++ |.+++++.++.
T Consensus 2 ~~~~l~~~----~~l~~vsl~i~~---Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS----TRLGPLSAEVRA---GEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh----ceecceEEEEcC---CCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEe
Confidence 57888885 389999999999 9999999999999999999999987 34455553321
Q ss_pred hh---cCCCCCHHHHHHHhCc-----hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh--------CCcE
Q 025114 93 EQ---SVDGTSVAEIFKLYGE-----GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ--------KGIS 153 (257)
Q Consensus 93 ~~---~~~~~~v~e~~~~~g~-----~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~--------~~~v 153 (257)
.+ .+...++.+++..... ....+...++++.+++.+ +.+..||||++||+.+++++. +|.+
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~l 154 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQL 154 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCE
Confidence 01 1124567776654311 112334567888888754 788999999999999998875 4699
Q ss_pred EEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccce
Q 025114 154 VWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANAR 211 (257)
Q Consensus 154 l~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~ 211 (257)
++||||+++| ++++...+.+++.++|+++.+..+| |++..|.+|++...++++.+
T Consensus 155 lllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~---d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 155 LLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHA---DRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhC---CEEEEEECCEEEEECCHHHH
Confidence 9999999998 3455445789999999977666666 77767767765544444433
No 226
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.93 E-value=1e-26 Score=197.73 Aligned_cols=164 Identities=19% Similarity=0.187 Sum_probs=113.6
Q ss_pred EEecceeeeeCc--cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh---------
Q 025114 29 LESGNVHAPIDE--AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE--------- 93 (257)
Q Consensus 29 l~~~~l~~~~~~--~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~--------- 93 (257)
|+++|+++.|++ +.+|+|+||+|++ |++++|+||||||||||+++|+|++ |.+++++..+..
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~---G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRA---GEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 789999999975 5799999999999 9999999999999999999999987 445565533210
Q ss_pred -----h--cCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC---c-----------cccccChhHhHHHHHHHHhh-CC
Q 025114 94 -----Q--SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR---Q-----------LVVSTGGGAVTRPINWRYMQ-KG 151 (257)
Q Consensus 94 -----~--~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~---~-----------~v~~lsgG~~qr~~~a~~l~-~~ 151 (257)
+ .+...++.+.+.............++++.+++.+ + .+..|||||+||+.+++++. +|
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 0 0112466666543211111122334555555432 2 34699999999999998876 79
Q ss_pred cEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHH
Q 025114 152 ISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEE 200 (257)
Q Consensus 152 ~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~ 200 (257)
++++||||+++| ++++.. +.++++++|+++.. .+| |++..+.+|
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~-~~~---d~v~~l~~g 214 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLG-DKTLIIITHRPSLL-DLV---DRIIVMDSG 214 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHH-HhC---CEEEEEeCC
Confidence 999999999998 233332 36788899996543 344 555444433
No 227
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=9.8e-27 Score=199.63 Aligned_cols=169 Identities=22% Similarity=0.236 Sum_probs=120.4
Q ss_pred EEecceeeeeCcc--ccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-------h-
Q 025114 29 LESGNVHAPIDEA--QVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE-------Q- 94 (257)
Q Consensus 29 l~~~~l~~~~~~~--~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~-------~- 94 (257)
|+++|+++.|+++ .+|+++||++++ |++++|+||||||||||+++|+|++ |.+++++..+.. .
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPA---GETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQ 77 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcC---CCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhh
Confidence 4789999999865 799999999999 9999999999999999999999997 445555533210 0
Q ss_pred --------cCCCCCHHHHHHHhCch----HHHHH-----HHHHHHHh--ccc---CccccccChhHhHHHHHHHHhh-CC
Q 025114 95 --------SVDGTSVAEIFKLYGEG----FFREK-----ETEVLQKL--SLM---RQLVVSTGGGAVTRPINWRYMQ-KG 151 (257)
Q Consensus 95 --------~~~~~~v~e~~~~~g~~----~~~~~-----~~~~l~~l--~~~---~~~v~~lsgG~~qr~~~a~~l~-~~ 151 (257)
.+...++.+.+...... ..... ..+.++.+ ++. ++.+..||||++|++.+++++. +|
T Consensus 78 i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 157 (234)
T cd03251 78 IGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDP 157 (234)
T ss_pred EEEeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 11235777776543211 11110 12334433 232 3668899999999999998886 79
Q ss_pred cEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHH
Q 025114 152 ISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAY 205 (257)
Q Consensus 152 ~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y 205 (257)
++++||||+++| ++++. .+.++++++|+++.+.. | |++..+.+|++...
T Consensus 158 ~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~-~---d~v~~l~~G~i~~~ 217 (234)
T cd03251 158 PILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLSTIEN-A---DRIVVLEDGKIVER 217 (234)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhh-C---CEEEEecCCeEeee
Confidence 999999999998 34443 37788999999766543 5 77766666665433
No 228
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.93 E-value=9.6e-27 Score=221.48 Aligned_cols=170 Identities=19% Similarity=0.188 Sum_probs=126.6
Q ss_pred cceEEecceeeeeC-----ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceec-chh-----
Q 025114 26 ASVLESGNVHAPID-----EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFD-CDT----- 90 (257)
Q Consensus 26 ~~~l~~~~l~~~~~-----~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d-~~~----- 90 (257)
.++|+++||++.|+ ++.+|+++||+|++ |++++|+||||||||||+|+|+|++ |.++++ +..
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~---Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~ 353 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKE---GEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMT 353 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCcccccc
Confidence 45899999999994 25799999999999 9999999999999999999999997 445553 210
Q ss_pred --------hhh-------h---cCCCCCHHHHHHHh---C--chHHHHHHHHHHHHhccc--------CccccccChhHh
Q 025114 91 --------LIE-------Q---SVDGTSVAEIFKLY---G--EGFFREKETEVLQKLSLM--------RQLVVSTGGGAV 139 (257)
Q Consensus 91 --------~~~-------~---~~~~~~v~e~~~~~---g--~~~~~~~~~~~l~~l~~~--------~~~v~~lsgG~~ 139 (257)
... + .+...++.+.+... + ....+.+..++++.+++. ++++..|||||+
T Consensus 354 ~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~ 433 (520)
T TIGR03269 354 KPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGER 433 (520)
T ss_pred ccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHH
Confidence 000 1 11245777776531 1 111223445778888884 378999999999
Q ss_pred HHHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHH
Q 025114 140 TRPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEER 201 (257)
Q Consensus 140 qr~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r 201 (257)
||+.+++++. +|.+++||||+++| +++++.. |.++++++||++.+..+| |++..|.+|+
T Consensus 434 qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~---d~i~~l~~G~ 505 (520)
T TIGR03269 434 HRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVC---DRAALMRDGK 505 (520)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhC---CEEEEEECCE
Confidence 9999998876 79999999999998 3455443 789999999977666666 6665555444
No 229
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=9e-27 Score=209.60 Aligned_cols=181 Identities=15% Similarity=0.130 Sum_probs=135.7
Q ss_pred cceEEecceeeeeC--ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---------CCceecchhhhh-
Q 025114 26 ASVLESGNVHAPID--EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---------GYSFFDCDTLIE- 93 (257)
Q Consensus 26 ~~~l~~~~l~~~~~--~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---------g~~~~d~~~~~~- 93 (257)
..+|+++|+++.|. ...+|+|+||+|++ |++++|+|+||||||||+++|+|+. |.+++++.++..
T Consensus 78 ~~~i~~~nls~~y~~~~~~~L~~is~~I~~---Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~ 154 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKR---NKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154 (329)
T ss_pred CceEEEEeeEEEecCCCceeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 35899999999995 45799999999999 9999999999999999999999986 445555554310
Q ss_pred --------h---------cCCCCCHHHHHHHhCc-------hHHHHHHHHHHHHhccc-------CccccccChhHhHHH
Q 025114 94 --------Q---------SVDGTSVAEIFKLYGE-------GFFREKETEVLQKLSLM-------RQLVVSTGGGAVTRP 142 (257)
Q Consensus 94 --------~---------~~~~~~v~e~~~~~g~-------~~~~~~~~~~l~~l~~~-------~~~v~~lsgG~~qr~ 142 (257)
. .....|+.+++..... ....+...++++.+++. ++....|||||+||+
T Consensus 155 ~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl 234 (329)
T PRK14257 155 KISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRL 234 (329)
T ss_pred ccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHH
Confidence 0 1124577777753211 11112234566766652 378899999999999
Q ss_pred HHHHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccc
Q 025114 143 INWRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANA 210 (257)
Q Consensus 143 ~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~ 210 (257)
.+|+++. +|++++||||+++| ++.+.+ +.+++.++|+++.+..+| |++..|.+|++..+|++..
T Consensus 235 ~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~i~~~~---Driivl~~G~i~e~g~~~~ 310 (329)
T PRK14257 235 CIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMAQAQRIS---DETVFFYQGWIEEAGETKT 310 (329)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhC---CEEEEEECCEEEEeCCHHH
Confidence 9998876 79999999999998 344433 578999999987777666 8888888888777777766
Q ss_pred eec
Q 025114 211 RVS 213 (257)
Q Consensus 211 ~~~ 213 (257)
+++
T Consensus 311 l~~ 313 (329)
T PRK14257 311 IFI 313 (329)
T ss_pred Hhc
Confidence 654
No 230
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.93 E-value=1e-26 Score=201.11 Aligned_cols=154 Identities=21% Similarity=0.258 Sum_probs=108.1
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh------CCceecchhhhh--------
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL------GYSFFDCDTLIE-------- 93 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l------g~~~~d~~~~~~-------- 93 (257)
||+++||++.|+++++|+++||+|++ |++++|+|+||||||||+++|+|++ |.+++++.++..
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRP---GEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAG 77 (248)
T ss_pred CeEEEEEEEEeCCeeeeecceeEEcC---CCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhh
Confidence 48899999999988899999999999 9999999999999999999999984 344555533210
Q ss_pred hcC----------CCCCHHHHHHHh--------Cch-----HHHHHHHHHHHHhccc----Ccccc-ccChhHhHHHHHH
Q 025114 94 QSV----------DGTSVAEIFKLY--------GEG-----FFREKETEVLQKLSLM----RQLVV-STGGGAVTRPINW 145 (257)
Q Consensus 94 ~~~----------~~~~v~e~~~~~--------g~~-----~~~~~~~~~l~~l~~~----~~~v~-~lsgG~~qr~~~a 145 (257)
..+ ...+..++.... ... .......++++.+++. .+.+. .||||++||+.++
T Consensus 78 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~la 157 (248)
T PRK09580 78 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDIL 157 (248)
T ss_pred cceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHH
Confidence 000 011111111100 000 0122334566666663 24454 7999999999999
Q ss_pred HHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCC
Q 025114 146 RYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESG 184 (257)
Q Consensus 146 ~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~ 184 (257)
+++. +|++++||||+++| +++++..+.+++.++|+++.+
T Consensus 158 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~ 208 (248)
T PRK09580 158 QMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRIL 208 (248)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 8876 79999999999988 344554578899999995443
No 231
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=8.3e-27 Score=222.38 Aligned_cols=170 Identities=20% Similarity=0.237 Sum_probs=126.9
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchh---hhhhc----
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDT---LIEQS---- 95 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~---~~~~~---- 95 (257)
.+|+++||++.|+++.+|+++||+|.+ |++++|+||||||||||+|+|+|++ |.+.+++.. ++.+.
T Consensus 318 ~~l~~~~l~~~~~~~~~l~~is~~i~~---Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~ 394 (530)
T PRK15064 318 NALEVENLTKGFDNGPLFKNLNLLLEA---GERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYD 394 (530)
T ss_pred ceEEEEeeEEeeCCceeecCcEEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEccccccc
Confidence 589999999999988899999999999 9999999999999999999999987 334444321 11111
Q ss_pred C-CCCCHHHHHHHhC-chHHHHHHHHHHHHhccc----CccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-----
Q 025114 96 V-DGTSVAEIFKLYG-EGFFREKETEVLQKLSLM----RQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL----- 163 (257)
Q Consensus 96 ~-~~~~v~e~~~~~g-~~~~~~~~~~~l~~l~~~----~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L----- 163 (257)
+ ...++.+.+.... .....+...++++.+++. ++++..|||||+||+.+++++. +|.+++||||+++|
T Consensus 395 ~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~ 474 (530)
T PRK15064 395 FENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESI 474 (530)
T ss_pred CCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence 1 2467777665422 111133456788888873 3789999999999999998876 79999999999998
Q ss_pred ---HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHH
Q 025114 164 ---AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERG 202 (257)
Q Consensus 164 ---~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~ 202 (257)
.+.+...+.++++++||++.+..+| |++..+.+|++
T Consensus 475 ~~l~~~l~~~~~tvi~vsHd~~~~~~~~---d~i~~l~~g~i 513 (530)
T PRK15064 475 ESLNMALEKYEGTLIFVSHDREFVSSLA---TRIIEITPDGV 513 (530)
T ss_pred HHHHHHHHHCCCEEEEEeCCHHHHHHhC---CEEEEEECCeE
Confidence 2333334558999999976666665 66655555543
No 232
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.93 E-value=6e-26 Score=182.03 Aligned_cols=170 Identities=22% Similarity=0.243 Sum_probs=126.3
Q ss_pred cceEEecceeeeeCc----cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh----
Q 025114 26 ASVLESGNVHAPIDE----AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE---- 93 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~----~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~---- 93 (257)
..+|++++++|..+. ..||++|+|.|++ ||.++||||+|||||||+-+++|+- |.+.+.+..+..
T Consensus 4 ~~ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~---Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd 80 (228)
T COG4181 4 ENIIEVHHLSKTVGQGEGELSILKGVELVVKR---GETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDED 80 (228)
T ss_pred cceeehhhhhhhhcCCCcceeEeecceEEecC---CceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHH
Confidence 348999999998864 5699999999999 9999999999999999999999986 334444433211
Q ss_pred --------------h---cCCCCCHHHHHHH----hCc--hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHH
Q 025114 94 --------------Q---SVDGTSVAEIFKL----YGE--GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRY 147 (257)
Q Consensus 94 --------------~---~~~~~~v~e~~~~----~g~--~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~ 147 (257)
+ ..+.++..|++.. .|+ ...+....++|+++|+.+ +++.+||||++||+++|++
T Consensus 81 ~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARA 160 (228)
T COG4181 81 ARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARA 160 (228)
T ss_pred HHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHH
Confidence 0 1134555555432 332 223455678899999976 7899999999999999999
Q ss_pred hh-CCcEEEEECCHHHHH------------HHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHH
Q 025114 148 MQ-KGISVWLDVPLEALA------------QRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERG 202 (257)
Q Consensus 148 l~-~~~vl~LDep~~~L~------------~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~ 202 (257)
+. .|++++.||||-+|+ ...+..|.+.++++||...+ .-| +|...+..|++
T Consensus 161 fa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA-~Rc---~R~~r~~~G~l 224 (228)
T COG4181 161 FAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLA-ARC---DRQLRLRSGRL 224 (228)
T ss_pred hcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHH-Hhh---hheeeeeccee
Confidence 97 799999999998883 22234689999999995433 234 66656665553
No 233
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.93 E-value=3.4e-25 Score=185.28 Aligned_cols=154 Identities=18% Similarity=0.168 Sum_probs=114.3
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh----------h
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI----------E 93 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~----------~ 93 (257)
+|+++|+++.|+++.+++ +||+|++ |++++|+|+||||||||+++|+|++ |..++++.++. .
T Consensus 1 ~l~~~~l~~~~~~~~l~~-vs~~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 76 (195)
T PRK13541 1 MLSLHQLQFNIEQKNLFD-LSITFLP---SAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIG 76 (195)
T ss_pred CeEEEEeeEEECCcEEEE-EEEEEcC---CcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEecc
Confidence 478999999998876665 9999999 9999999999999999999999987 55566654321 1
Q ss_pred h---cCCCCCHHHHHHHhCchH-HHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH--
Q 025114 94 Q---SVDGTSVAEIFKLYGEGF-FREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL-- 163 (257)
Q Consensus 94 ~---~~~~~~v~e~~~~~g~~~-~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L-- 163 (257)
+ .....++.+.+....... ..+...++++.+++.+ +.+..||||++|++.+++++. +|++++||||+++|
T Consensus 77 ~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~ 156 (195)
T PRK13541 77 HNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSK 156 (195)
T ss_pred CCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 1 112467777665422110 1223456677777643 788999999999999998876 79999999999998
Q ss_pred ---------HHHHHhcCCCCccccCCCCCCc
Q 025114 164 ---------AQRIAAVGTDSRPLLHQCESGD 185 (257)
Q Consensus 164 ---------~~rl~~~g~~~~~~~h~~~~~~ 185 (257)
++.....+.+++.++|+.+.+.
T Consensus 157 ~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~ 187 (195)
T PRK13541 157 ENRDLLNNLIVMKANSGGIVLLSSHLESSIK 187 (195)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCccccc
Confidence 2222335778899999966543
No 234
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.92 E-value=1e-26 Score=204.36 Aligned_cols=177 Identities=20% Similarity=0.192 Sum_probs=132.7
Q ss_pred EEecceeeee--CccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---CCceecchhhhh-------h--
Q 025114 29 LESGNVHAPI--DEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---GYSFFDCDTLIE-------Q-- 94 (257)
Q Consensus 29 l~~~~l~~~~--~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---g~~~~d~~~~~~-------~-- 94 (257)
|+++|+++.| ++..+|+|+||+|++ |++++|+|+||||||||+++|+|++ |.+++++.++.. .
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~---Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISP---GQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcC---CCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhE
Confidence 7899999999 457799999999999 9999999999999999999999997 556676644311 0
Q ss_pred -------cCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC---ccccc-----------cChhHhHHHHHHHHhh-CCc
Q 025114 95 -------SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR---QLVVS-----------TGGGAVTRPINWRYMQ-KGI 152 (257)
Q Consensus 95 -------~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~---~~v~~-----------lsgG~~qr~~~a~~l~-~~~ 152 (257)
.+...++.+++..++. ...+...++++.+++.+ +.+.. ||||++|++.+++++. +|+
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~ 158 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGK-WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 158 (275)
T ss_pred EEECCCcccchhhHHHHhhhccC-CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 0012366666643332 11233456677777643 34443 9999999999998876 799
Q ss_pred EEEEECCHHHHH--------HHHH--hcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceec
Q 025114 153 SVWLDVPLEALA--------QRIA--AVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVS 213 (257)
Q Consensus 153 vl~LDep~~~L~--------~rl~--~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~ 213 (257)
+++||||+++|+ +.+. ..+.+++.++|+++.+. .| |++..|.+|++..+|+++.++.
T Consensus 159 illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~-~~---dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 159 ILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAML-EC---QRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHH-hC---CEEEEecCCeEeecCCHHHHhh
Confidence 999999999982 2222 23678999999976554 35 8888888999999998877765
No 235
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.92 E-value=4.8e-27 Score=201.99 Aligned_cols=167 Identities=22% Similarity=0.255 Sum_probs=115.8
Q ss_pred EEecceeeeeCc--cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh---------
Q 025114 29 LESGNVHAPIDE--AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE--------- 93 (257)
Q Consensus 29 l~~~~l~~~~~~--~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~--------- 93 (257)
++++|+++.|++ +.+|+++||++++ |++++|+|+||||||||+++|+|++ |.+++++.++..
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKP---GEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQ 77 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhc
Confidence 478999999963 5799999999999 9999999999999999999999997 455666543211
Q ss_pred -----h--cCCCCCHHHHHHHhCchHHHHHH---------HHHHHHh--ccc---CccccccChhHhHHHHHHHHhh-CC
Q 025114 94 -----Q--SVDGTSVAEIFKLYGEGFFREKE---------TEVLQKL--SLM---RQLVVSTGGGAVTRPINWRYMQ-KG 151 (257)
Q Consensus 94 -----~--~~~~~~v~e~~~~~g~~~~~~~~---------~~~l~~l--~~~---~~~v~~lsgG~~qr~~~a~~l~-~~ 151 (257)
+ .+...++.+.+............ .++++.+ ++. ++.+..|||||+|++.+++++. +|
T Consensus 78 i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p 157 (237)
T cd03252 78 VGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNP 157 (237)
T ss_pred EEEEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCC
Confidence 0 01234666665442111001111 1233333 222 2578999999999999998876 79
Q ss_pred cEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHH
Q 025114 152 ISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGE 203 (257)
Q Consensus 152 ~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~ 203 (257)
++++||||+++| ++++. .|.+++.++|+++.+. .| +++..+.+|++.
T Consensus 158 ~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~-~~---d~v~~l~~G~i~ 215 (237)
T cd03252 158 RILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLSTVK-NA---DRIIVMEKGRIV 215 (237)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHH-hC---CEEEEEECCEEE
Confidence 999999999998 33443 3778899999965542 34 555555555443
No 236
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=7.1e-27 Score=199.88 Aligned_cols=166 Identities=20% Similarity=0.198 Sum_probs=113.4
Q ss_pred EEecceeeeeCc-cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-------h--
Q 025114 29 LESGNVHAPIDE-AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE-------Q-- 94 (257)
Q Consensus 29 l~~~~l~~~~~~-~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~-------~-- 94 (257)
|+++|+++.|++ +.+++++||++++ |++++|+||||||||||+|+|+|++ |.+++++..+.. .
T Consensus 3 l~~~~l~~~~~~~~~~l~~isl~i~~---G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 3 IEFENVNFSYDEKKPVLKDINFSIKP---GETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred EEEEEEEEecCCCCccccceEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 789999999975 5799999999999 9999999999999999999999997 455666543211 0
Q ss_pred -------cCCCCCHHHHHHHhCchHHHHHHHHHHHHhc-----------cc---CccccccChhHhHHHHHHHHhh-CCc
Q 025114 95 -------SVDGTSVAEIFKLYGEGFFREKETEVLQKLS-----------LM---RQLVVSTGGGAVTRPINWRYMQ-KGI 152 (257)
Q Consensus 95 -------~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~-----------~~---~~~v~~lsgG~~qr~~~a~~l~-~~~ 152 (257)
.+...++.+.+.............++++.++ +. .+.+..|||||+||+.+++++. +|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 0012255555543221111111222222222 21 2457899999999999998886 799
Q ss_pred EEEEECCHHHHH-----------HHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHH
Q 025114 153 SVWLDVPLEALA-----------QRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERG 202 (257)
Q Consensus 153 vl~LDep~~~L~-----------~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~ 202 (257)
+++||||+++|+ .++. .+.+++.++|+++... .| +++..|.+|++
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~-~~---d~i~~l~~g~~ 215 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLSTIK-NA---DKILVLDDGKI 215 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHh-hC---CEEEEEeCCeE
Confidence 999999999982 3333 3678899999965432 24 55545544443
No 237
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.92 E-value=4.4e-26 Score=218.57 Aligned_cols=171 Identities=22% Similarity=0.175 Sum_probs=125.5
Q ss_pred cceEEecceeeeeC-ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchh---hhhh---
Q 025114 26 ASVLESGNVHAPID-EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDT---LIEQ--- 94 (257)
Q Consensus 26 ~~~l~~~~l~~~~~-~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~---~~~~--- 94 (257)
+++|+++||++.|+ ++++|+|+||+|.+ |++++|+||||||||||+|+|+|++ |.+.++... ++.+
T Consensus 4 ~~~l~i~~l~~~y~~~~~il~~vs~~i~~---Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~ 80 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQILKDISLSFFP---GAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQ 80 (556)
T ss_pred cEEEEEeeEEEEeCCCCeeeeCceEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCC
Confidence 45899999999998 78899999999999 9999999999999999999999987 333333211 1111
Q ss_pred cCCCCCHHHHHHHhCc------------------h------------------------HHHHHHHHHHHHhccc--Ccc
Q 025114 95 SVDGTSVAEIFKLYGE------------------G------------------------FFREKETEVLQKLSLM--RQL 130 (257)
Q Consensus 95 ~~~~~~v~e~~~~~g~------------------~------------------------~~~~~~~~~l~~l~~~--~~~ 130 (257)
.+...++.+.+..... . ....+..++++.+++. ++.
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 160 (556)
T PRK11819 81 LDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAK 160 (556)
T ss_pred CCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCc
Confidence 1224577766543100 0 0012334567777764 378
Q ss_pred ccccChhHhHHHHHHHHhh-CCcEEEEECCHHHHH--------HHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHH
Q 025114 131 VVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEALA--------QRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEER 201 (257)
Q Consensus 131 v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L~--------~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r 201 (257)
+..|||||+||+.+++++. +|++++||||+++|+ +.++..+.+++.++||++.+..+| |++..|.+|+
T Consensus 161 ~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~---d~i~~l~~g~ 237 (556)
T PRK11819 161 VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVA---GWILELDRGR 237 (556)
T ss_pred hhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhc---CeEEEEeCCE
Confidence 9999999999999998876 799999999999982 333444458899999987776666 6776666665
Q ss_pred H
Q 025114 202 G 202 (257)
Q Consensus 202 ~ 202 (257)
+
T Consensus 238 i 238 (556)
T PRK11819 238 G 238 (556)
T ss_pred E
Confidence 4
No 238
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.92 E-value=3.9e-26 Score=194.37 Aligned_cols=152 Identities=24% Similarity=0.238 Sum_probs=115.8
Q ss_pred eEEecceeeeeCc----cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh------
Q 025114 28 VLESGNVHAPIDE----AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------ 93 (257)
Q Consensus 28 ~l~~~~l~~~~~~----~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------ 93 (257)
+|+++|+++.|++ +.+|+++||++.+ |++++|+|+||||||||+++|+|.+ |.+++++..+..
T Consensus 1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~---G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 77 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQVLFDINLEINP---GEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKEL 77 (220)
T ss_pred CEEEEEEEEEccCCCcceeEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHH
Confidence 3789999999975 6799999999999 9999999999999999999999987 345555543310
Q ss_pred --------------hcCCCCCHHHHHHHhC-------chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh
Q 025114 94 --------------QSVDGTSVAEIFKLYG-------EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ 149 (257)
Q Consensus 94 --------------~~~~~~~v~e~~~~~g-------~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~ 149 (257)
..+...++.+.+.... ....+....++++.+++.+ +.+..||+|++||+.+++++.
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~ 157 (220)
T TIGR02982 78 VQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALV 157 (220)
T ss_pred HHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHh
Confidence 0112357776654321 1112234567888888754 788999999999999998876
Q ss_pred -CCcEEEEECCHHHH-----------HHHHHh-cCCCCccccCCCC
Q 025114 150 -KGISVWLDVPLEAL-----------AQRIAA-VGTDSRPLLHQCE 182 (257)
Q Consensus 150 -~~~vl~LDep~~~L-----------~~rl~~-~g~~~~~~~h~~~ 182 (257)
+|++++||||+++| ++++.+ .+.+++.++|+++
T Consensus 158 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~ 203 (220)
T TIGR02982 158 HRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR 203 (220)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 79999999999888 344443 3789999999954
No 239
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.92 E-value=2.6e-26 Score=217.51 Aligned_cols=170 Identities=15% Similarity=0.174 Sum_probs=127.1
Q ss_pred cceEEecceeeee---CccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC-----Cceecchhhh-----
Q 025114 26 ASVLESGNVHAPI---DEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG-----YSFFDCDTLI----- 92 (257)
Q Consensus 26 ~~~l~~~~l~~~~---~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg-----~~~~d~~~~~----- 92 (257)
.++|+++|+++.| +++.+|+++||+|.+ |++++|+||||||||||+|+|+|++. .+++++.++.
T Consensus 255 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~---Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~ 331 (500)
T TIGR02633 255 DVILEARNLTCWDVINPHRKRVDDVSFSLRR---GEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPA 331 (500)
T ss_pred CceEEEeCCcccccccccccccccceeEEeC---CcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHH
Confidence 3579999999999 356799999999999 99999999999999999999999874 2455442210
Q ss_pred ----------hh------cCCCCCHHHHHHHhC----------c-hHHHHHHHHHHHHhccc----CccccccChhHhHH
Q 025114 93 ----------EQ------SVDGTSVAEIFKLYG----------E-GFFREKETEVLQKLSLM----RQLVVSTGGGAVTR 141 (257)
Q Consensus 93 ----------~~------~~~~~~v~e~~~~~g----------~-~~~~~~~~~~l~~l~~~----~~~v~~lsgG~~qr 141 (257)
.+ .+...++.+.+.... . ...+....++++.+++. ++++..|||||+||
T Consensus 332 ~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr 411 (500)
T TIGR02633 332 QAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQK 411 (500)
T ss_pred HHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHH
Confidence 00 122356666543211 0 11123345788888874 26789999999999
Q ss_pred HHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHH
Q 025114 142 PINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEER 201 (257)
Q Consensus 142 ~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r 201 (257)
+.+|+++. +|.+++|||||++| ++.+++.|.++++++||++.+..+| |++..+.+|+
T Consensus 412 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~---d~v~~l~~G~ 480 (500)
T TIGR02633 412 AVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLS---DRVLVIGEGK 480 (500)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhC---CEEEEEECCE
Confidence 99998886 79999999999998 3555556889999999987777776 7765565554
No 240
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=4.7e-27 Score=191.95 Aligned_cols=189 Identities=19% Similarity=0.196 Sum_probs=149.2
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecch-hhh---------
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCD-TLI--------- 92 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~-~~~--------- 92 (257)
++|+++||+++|++..+|+++||++.+ |+.-+|||||||||||++-.|.|.. |..+++++ ++.
T Consensus 4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~---Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr 80 (249)
T COG4674 4 IILYLDGVSVSFGGFKALNDLSFSVDP---GELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80 (249)
T ss_pred ceEEEeceEEEEcceeeeeeeEEEecC---CeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHH
Confidence 679999999999999999999999999 9999999999999999999999987 45677762 221
Q ss_pred ---------hhcCCCCCHHHHHHHhC---ch-----------HHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHH
Q 025114 93 ---------EQSVDGTSVAEIFKLYG---EG-----------FFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWR 146 (257)
Q Consensus 93 ---------~~~~~~~~v~e~~~~~g---~~-----------~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~ 146 (257)
...+...|+.+++...- +. .-+.+..++|...++.+ +....||.||+|+.+|..
T Consensus 81 ~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGM 160 (249)
T COG4674 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGM 160 (249)
T ss_pred hccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhhe
Confidence 01224567777765421 11 11345668888888875 667889999999999998
Q ss_pred Hhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecc
Q 025114 147 YMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSL 214 (257)
Q Consensus 147 ~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~ 214 (257)
++. +|++++||||++++ ++.++. ...+..+.|||..+..++ +++..|..|.+...|+.+++-..
T Consensus 161 ll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~Fvr~~A---~~VTVlh~G~VL~EGsld~v~~d 236 (249)
T COG4674 161 LLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMGFVREIA---DKVTVLHEGSVLAEGSLDEVQND 236 (249)
T ss_pred eeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHHHHHHhh---heeEEEeccceeecccHHHhhcC
Confidence 887 69999999999887 566654 457888999999888887 88888999988888887777666
Q ss_pred hhhhhhcc
Q 025114 215 ENIAVKLG 222 (257)
Q Consensus 215 ~~l~~~~~ 222 (257)
+.+.++|-
T Consensus 237 p~ViEvYL 244 (249)
T COG4674 237 PKVIEVYL 244 (249)
T ss_pred cceEeeec
Confidence 65555554
No 241
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.92 E-value=3.7e-25 Score=184.20 Aligned_cols=143 Identities=23% Similarity=0.240 Sum_probs=105.9
Q ss_pred eCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh----------------hh---
Q 025114 38 IDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI----------------EQ--- 94 (257)
Q Consensus 38 ~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~----------------~~--- 94 (257)
|+++.+|+++||+|.+ |++++|+||||||||||+++|+|++ |.+++++.++. .+
T Consensus 2 ~~~~~il~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 78 (190)
T TIGR01166 2 PGGPEVLKGLNFAAER---GEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPD 78 (190)
T ss_pred CCccceecceeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChh
Confidence 4667899999999999 9999999999999999999999987 44555543220 00
Q ss_pred -cCCCCCHHHHHHHh----Cc--hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH
Q 025114 95 -SVDGTSVAEIFKLY----GE--GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL 163 (257)
Q Consensus 95 -~~~~~~v~e~~~~~----g~--~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L 163 (257)
.....++.+.+... +. ....+...++++.+++.+ +.+..||||++||+.+++++. +|.+++||||+++|
T Consensus 79 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~L 158 (190)
T TIGR01166 79 DQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGL 158 (190)
T ss_pred hccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 01234666665431 11 112234456788888753 788999999999999998876 79999999999998
Q ss_pred -----------HHHHHhcCCCCccccCCCCC
Q 025114 164 -----------AQRIAAVGTDSRPLLHQCES 183 (257)
Q Consensus 164 -----------~~rl~~~g~~~~~~~h~~~~ 183 (257)
++++++.|.+++.++|+++.
T Consensus 159 D~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 159 DPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 34444457788899998653
No 242
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.2e-26 Score=200.30 Aligned_cols=177 Identities=16% Similarity=0.155 Sum_probs=127.8
Q ss_pred CcceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC---------Cceecchhhh---
Q 025114 25 SASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG---------YSFFDCDTLI--- 92 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg---------~~~~d~~~~~--- 92 (257)
+..+|+++|+++.|+++++|+++||+|++ |++++|+|+||||||||+++|+|++. .+.+++..+.
T Consensus 13 ~~~~l~~~~l~~~~~~~~vl~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 13 TQQKSEVNKLNFYYGGYQALKNINMMVHE---KQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred CCceEEEEEEEEEECCeeeeeeeEEEEcC---CcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 45689999999999988999999999999 99999999999999999999999863 2344432210
Q ss_pred --------hh-------c--CCCCCHHHHHHHh----Cc---hHHHHHHHHHHHHhccc-------CccccccChhHhHH
Q 025114 93 --------EQ-------S--VDGTSVAEIFKLY----GE---GFFREKETEVLQKLSLM-------RQLVVSTGGGAVTR 141 (257)
Q Consensus 93 --------~~-------~--~~~~~v~e~~~~~----g~---~~~~~~~~~~l~~l~~~-------~~~v~~lsgG~~qr 141 (257)
.. . ....++.+.+... +. ...++...++++.+++. ++.+..||||++||
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 169 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQR 169 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHH
Confidence 00 0 0123666665432 10 11123334566666542 36788999999999
Q ss_pred HHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcc
Q 025114 142 PINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANA 208 (257)
Q Consensus 142 ~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~ 208 (257)
+.+++++. +|++++||||+++| +++++. +.++++++|+++.+..+| |++..+.+|++..+++.
T Consensus 170 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~~~~~~~---d~i~~l~~G~i~~~g~~ 244 (265)
T PRK14252 170 LCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQQAARVS---DYTAYMYMGELIEFGAT 244 (265)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHHhC---CEEEEEECCEEEEeCCH
Confidence 99998876 79999999999998 344443 578899999977666666 77766766666544444
No 243
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.7e-26 Score=203.78 Aligned_cols=177 Identities=19% Similarity=0.172 Sum_probs=126.3
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---------CCceecchhhh----
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---------GYSFFDCDTLI---- 92 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---------g~~~~d~~~~~---- 92 (257)
..+|+++||++.|+++.+|+++||+|.+ |++++|+|+||||||||+++|+|++ |.+++++.++.
T Consensus 43 ~~~l~i~nl~~~~~~~~iL~~is~~i~~---Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~ 119 (305)
T PRK14264 43 DAKLSVEDLDVYYGDDHALKGVSMDIPE---KSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV 119 (305)
T ss_pred CceEEEEEEEEEeCCeeeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 3579999999999988999999999999 9999999999999999999999986 23444443221
Q ss_pred ------------hhc--CCCCCHHHHHHHhC----------------c---hHHHHHHHHHHHHhccc-------Ccccc
Q 025114 93 ------------EQS--VDGTSVAEIFKLYG----------------E---GFFREKETEVLQKLSLM-------RQLVV 132 (257)
Q Consensus 93 ------------~~~--~~~~~v~e~~~~~g----------------~---~~~~~~~~~~l~~l~~~-------~~~v~ 132 (257)
.+. +...++.+++...- . ...++...++++.+++. ++.+.
T Consensus 120 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 199 (305)
T PRK14264 120 NLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNAL 199 (305)
T ss_pred cHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccc
Confidence 000 11346666654310 0 01123345667777652 36789
Q ss_pred ccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHH-HHHHH
Q 025114 133 STGGGAVTRPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRL-STLWE 199 (257)
Q Consensus 133 ~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v-~~l~~ 199 (257)
.||||++||+.+++++. +|.+++||||+++| ++++.+ +.++++++|+++.+..+| +++ ..|.+
T Consensus 200 ~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~i~~~~---d~i~~~l~~ 275 (305)
T PRK14264 200 GLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQQAARIS---DQTAVFLTG 275 (305)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhc---CEEEEEecC
Confidence 99999999999998886 79999999999998 344433 467889999977666665 664 34456
Q ss_pred HHHHHHhccc
Q 025114 200 ERGEAYANAN 209 (257)
Q Consensus 200 ~r~~~y~~~~ 209 (257)
|++..+++++
T Consensus 276 G~i~~~g~~~ 285 (305)
T PRK14264 276 GELVEYDDTD 285 (305)
T ss_pred CEEEEeCCHH
Confidence 6555444443
No 244
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=1e-25 Score=179.40 Aligned_cols=176 Identities=18% Similarity=0.219 Sum_probs=128.4
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhh----------h-
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTL----------I- 92 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~----------~- 92 (257)
.|+++++++.||..++|.||+|+.++ |+.++|+||+|||||||+|.|+-+. |...+.+..+ +
T Consensus 2 sirv~~in~~yg~~q~lfdi~l~~~~---getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGAHQALFDITLDCPE---GETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEcccccccccchheeeeeecCCC---CCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 48899999999999999999999999 9999999999999999999998544 1111111100 0
Q ss_pred --hh----------cCCCCCHHHHHHH-----hC--chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-
Q 025114 93 --EQ----------SVDGTSVAEIFKL-----YG--EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ- 149 (257)
Q Consensus 93 --~~----------~~~~~~v~e~~~~-----~g--~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~- 149 (257)
.+ .++.+++.+++-. .| +...+.+..++|+++.+.+ +.+..||||++||+++++++.
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmm 158 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMM 158 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhc
Confidence 00 1123344443321 11 1222344567888887754 899999999999999998775
Q ss_pred CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccc
Q 025114 150 KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN 209 (257)
Q Consensus 150 ~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~ 209 (257)
+|.++++|||++.| ++.++..|++-..++|.++.+...+ .++.-|-+|+++..|+++
T Consensus 159 kpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~a---s~vvyme~g~ive~g~a~ 226 (242)
T COG4161 159 EPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTA---SRVVYMENGHIVEQGDAS 226 (242)
T ss_pred CCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhh---hheEeeecCeeEeecchh
Confidence 89999999999988 5667777999999999977666555 666566666666555544
No 245
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.4e-26 Score=223.26 Aligned_cols=169 Identities=18% Similarity=0.178 Sum_probs=122.0
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhh---hhhc--CCC
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTL---IEQS--VDG 98 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~---~~~~--~~~ 98 (257)
||.++||++.|+++.+|+|+||+|.+ |++++|+||||||||||+|+|+|.+ |.+++++... ..+. ...
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~---Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~ 77 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINP---GQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALP 77 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCC
Confidence 58899999999999999999999999 9999999999999999999999986 3344443210 1110 001
Q ss_pred CCHHHHHHH---------------------------h------CchHHHHHHHHHHHHhccc----CccccccChhHhHH
Q 025114 99 TSVAEIFKL---------------------------Y------GEGFFREKETEVLQKLSLM----RQLVVSTGGGAVTR 141 (257)
Q Consensus 99 ~~v~e~~~~---------------------------~------g~~~~~~~~~~~l~~l~~~----~~~v~~lsgG~~qr 141 (257)
.++.+++.. . +......+..++++.+++. ++++..||||++||
T Consensus 78 ~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqR 157 (638)
T PRK10636 78 QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMR 157 (638)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHH
Confidence 122111100 0 0001123456788888884 37899999999999
Q ss_pred HHHHHHhh-CCcEEEEECCHHHHH--------HHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHH
Q 025114 142 PINWRYMQ-KGISVWLDVPLEALA--------QRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERG 202 (257)
Q Consensus 142 ~~~a~~l~-~~~vl~LDep~~~L~--------~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~ 202 (257)
+.++++|. +|++++|||||++|+ +-+...+.++++++||...+..+| +++..|.+|++
T Consensus 158 v~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~---d~i~~L~~G~i 224 (638)
T PRK10636 158 LNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIV---DKIIHIEQQSL 224 (638)
T ss_pred HHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhc---CEEEEEeCCEE
Confidence 99998876 799999999999982 333344668999999977766666 66666666654
No 246
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2e-26 Score=189.27 Aligned_cols=141 Identities=23% Similarity=0.276 Sum_probs=97.6
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhhhcCCCCCHHHH
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIEQSVDGTSVAEI 104 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~~~~~~~~v~e~ 104 (257)
|+++|+++.|+++.+|+++||++.+ |++++|+||||||||||+|+|+|++ |...+++..+.. .+ .+.
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~---Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~-----~~-~~~ 71 (173)
T cd03230 1 IEVRNLSKRYGKKTALDDISLTVEK---GEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKK-----EP-EEV 71 (173)
T ss_pred CEEEEEEEEECCeeeeeeeEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccc-----ch-Hhh
Confidence 4789999999888899999999999 9999999999999999999999987 334454432210 00 000
Q ss_pred HHHhC----c-hHHHHHHHHHHHHhcccCccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-----------HHHH
Q 025114 105 FKLYG----E-GFFREKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL-----------AQRI 167 (257)
Q Consensus 105 ~~~~g----~-~~~~~~~~~~l~~l~~~~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~~rl 167 (257)
-...+ . ..+.. ..+.+.+ .|||||+||+.+++++. +|++++||||+++| ++++
T Consensus 72 ~~~i~~~~q~~~~~~~--~tv~~~~--------~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~ 141 (173)
T cd03230 72 KRRIGYLPEEPSLYEN--LTVRENL--------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLREL 141 (173)
T ss_pred hccEEEEecCCccccC--CcHHHHh--------hcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 00000 0 00000 0000111 19999999999998887 79999999999998 3455
Q ss_pred HhcCCCCccccCCCCCCchhh
Q 025114 168 AAVGTDSRPLLHQCESGDAYT 188 (257)
Q Consensus 168 ~~~g~~~~~~~h~~~~~~~~~ 188 (257)
.+.|.+++.++|+.+.+..+|
T Consensus 142 ~~~g~tiii~th~~~~~~~~~ 162 (173)
T cd03230 142 KKEGKTILLSSHILEEAERLC 162 (173)
T ss_pred HHCCCEEEEECCCHHHHHHhC
Confidence 445778899999954433333
No 247
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.2e-26 Score=222.42 Aligned_cols=173 Identities=19% Similarity=0.185 Sum_probs=126.4
Q ss_pred CcceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecch-h--hhhh---
Q 025114 25 SASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCD-T--LIEQ--- 94 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~-~--~~~~--- 94 (257)
..++|+++||++.|+++.+|+|+||+|.+ |++++|+||||||||||+|+|+|.+ |.+.++.. . ++.+
T Consensus 309 ~~~~l~~~~l~~~y~~~~il~~isl~i~~---Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~ 385 (638)
T PRK10636 309 PNPLLKMEKVSAGYGDRIILDSIKLNLVP---GSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQL 385 (638)
T ss_pred CCceEEEEeeEEEeCCeeeeccceEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcch
Confidence 34589999999999998999999999999 9999999999999999999999987 33333211 0 1111
Q ss_pred --cCCCCCHHHHHHHhCchHHHHHHHHHHHHhccc----CccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH----
Q 025114 95 --SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLM----RQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL---- 163 (257)
Q Consensus 95 --~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~----~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L---- 163 (257)
.....++.+.+.............++|..+++. ++++..||||++||+.+++++. +|.+++|||||++|
T Consensus 386 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~ 465 (638)
T PRK10636 386 EFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDM 465 (638)
T ss_pred hhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence 111234444332222222234456788888874 2789999999999999998886 79999999999998
Q ss_pred ----HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHH
Q 025114 164 ----AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGE 203 (257)
Q Consensus 164 ----~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~ 203 (257)
.+-|...+.++++++||.+.+..+| +++..+.+|++.
T Consensus 466 ~~~l~~~L~~~~gtvi~vSHd~~~~~~~~---d~i~~l~~G~i~ 506 (638)
T PRK10636 466 RQALTEALIDFEGALVVVSHDRHLLRSTT---DDLYLVHDGKVE 506 (638)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHhC---CEEEEEECCEEE
Confidence 2333333458999999977776666 666666566543
No 248
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=4e-26 Score=194.92 Aligned_cols=158 Identities=18% Similarity=0.133 Sum_probs=119.4
Q ss_pred ccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecc------hhhhhhcC-----------CC--
Q 025114 42 QVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDC------DTLIEQSV-----------DG-- 98 (257)
Q Consensus 42 ~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~------~~~~~~~~-----------~~-- 98 (257)
.+++||||+|++ |++++++|||||||||++|+|+|++ |.+.+.+ +....... ..
T Consensus 38 ~AVqdisf~IP~---G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 38 EAVQDISFEIPK---GEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhheeeeecCC---CcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence 489999999999 9999999999999999999999998 3222222 11111110 11
Q ss_pred ----CCHHHHHHHhCchHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHH-hhCCcEEEEECCHHHH-------
Q 025114 99 ----TSVAEIFKLYGEGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRY-MQKGISVWLDVPLEAL------- 163 (257)
Q Consensus 99 ----~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~-l~~~~vl~LDep~~~L------- 163 (257)
+.+...+...+...|+++...+.+-+++.. .++..||-||+.|+.+++. |++|.+++|||||-+|
T Consensus 115 ~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ 194 (325)
T COG4586 115 ALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQAN 194 (325)
T ss_pred hhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHH
Confidence 122333333455678888777777777764 7899999999999999855 5679999999999888
Q ss_pred ----HHHHHh-cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHH
Q 025114 164 ----AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAY 205 (257)
Q Consensus 164 ----~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y 205 (257)
++...+ ++.|+...+|+++.+..+| +++..+..|+....
T Consensus 195 ir~Flke~n~~~~aTVllTTH~~~di~~lc---~rv~~I~~Gqlv~d 238 (325)
T COG4586 195 IREFLKEYNEERQATVLLTTHIFDDIATLC---DRVLLIDQGQLVFD 238 (325)
T ss_pred HHHHHHHHHHhhCceEEEEecchhhHHHhh---hheEEeeCCcEeec
Confidence 233332 4789999999999999999 99988888988773
No 249
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.92 E-value=2.7e-26 Score=217.91 Aligned_cols=174 Identities=17% Similarity=0.209 Sum_probs=128.3
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhh----------
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTL---------- 91 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~---------- 91 (257)
.++|+++|+++ .+|+++||+|++ |++++|+||||||||||+|+|+|++ |.+.+++.++
T Consensus 266 ~~~l~~~~l~~-----~~l~~isl~i~~---Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 337 (510)
T PRK15439 266 APVLTVEDLTG-----EGFRNISLEVRA---GEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLA 337 (510)
T ss_pred CceEEEeCCCC-----CCccceeEEEcC---CcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHh
Confidence 45899999995 269999999999 9999999999999999999999986 4445554321
Q ss_pred -----hhh------cCCCCCHHHHHHHh-----C----chHHHHHHHHHHHHhccc-C---ccccccChhHhHHHHHHHH
Q 025114 92 -----IEQ------SVDGTSVAEIFKLY-----G----EGFFREKETEVLQKLSLM-R---QLVVSTGGGAVTRPINWRY 147 (257)
Q Consensus 92 -----~~~------~~~~~~v~e~~~~~-----g----~~~~~~~~~~~l~~l~~~-~---~~v~~lsgG~~qr~~~a~~ 147 (257)
+.+ .+...++.+.+... . ....++...++++.+++. + +++.+|||||+||+.++++
T Consensus 338 ~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~a 417 (510)
T PRK15439 338 RGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKC 417 (510)
T ss_pred CCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHH
Confidence 111 11234665554211 1 111123345778888885 2 7899999999999999988
Q ss_pred hh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccc
Q 025114 148 MQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANA 210 (257)
Q Consensus 148 l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~ 210 (257)
+. +|++++||||+++| +++++..|.++++++||++.+..+| |++..+.+|++...++++.
T Consensus 418 l~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~---d~i~~l~~G~i~~~~~~~~ 489 (510)
T PRK15439 418 LEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMA---DRVLVMHQGEISGALTGAA 489 (510)
T ss_pred HhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhC---CEEEEEECCEEEEEEcccc
Confidence 86 79999999999998 4555556889999999988777777 7877777776654444443
No 250
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.92 E-value=5.2e-26 Score=194.39 Aligned_cols=168 Identities=23% Similarity=0.253 Sum_probs=121.4
Q ss_pred eEEecceeeeeCc----cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC---C----ceecchhhh----
Q 025114 28 VLESGNVHAPIDE----AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG---Y----SFFDCDTLI---- 92 (257)
Q Consensus 28 ~l~~~~l~~~~~~----~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg---~----~~~d~~~~~---- 92 (257)
.++++||+++|.+ +++|+++||+|++ |++++|+||||||||||+|+|+|++. + +++++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~---Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~ 79 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVES---GQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQF 79 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcC---CeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHh
Confidence 4689999999964 5799999999999 99999999999999999999999875 2 344443221
Q ss_pred -------h---hcCCCCCHHHHHHHhCc----h-----HHHHHHHH-HHHHhcccC---ccccccChhHhHHHHHHHHhh
Q 025114 93 -------E---QSVDGTSVAEIFKLYGE----G-----FFREKETE-VLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ 149 (257)
Q Consensus 93 -------~---~~~~~~~v~e~~~~~g~----~-----~~~~~~~~-~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~ 149 (257)
. ..+.++|+.+.+..... . .......+ .++.+++.+ +.+..||||++||+.+++++.
T Consensus 80 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 159 (226)
T cd03234 80 QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLL 159 (226)
T ss_pred cccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHH
Confidence 0 01234678777653211 0 01112233 677777643 678999999999999998876
Q ss_pred -CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCC-CCchhhHHHHHHHHHHHHH
Q 025114 150 -KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCE-SGDAYTEALNRLSTLWEER 201 (257)
Q Consensus 150 -~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~-~~~~~~~~~~~v~~l~~~r 201 (257)
+|++++||||+++| +.++...+.+++.++|++. .+..+| |++..+.+|+
T Consensus 160 ~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~---d~i~~l~~G~ 221 (226)
T cd03234 160 WDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLF---DRILLLSSGE 221 (226)
T ss_pred hCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhC---CEEEEEeCCE
Confidence 79999999999988 3444445778899999963 555555 6665555443
No 251
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.92 E-value=2.3e-26 Score=197.99 Aligned_cols=159 Identities=25% Similarity=0.206 Sum_probs=113.1
Q ss_pred eeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhh-------------hh-h---
Q 025114 36 APIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTL-------------IE-Q--- 94 (257)
Q Consensus 36 ~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~-------------~~-~--- 94 (257)
+.|+++++|+++||+|++ |++++|+|+||||||||+|+|+|++ |.+++++... .. +
T Consensus 29 ~~~~~~~il~~vs~~i~~---Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~ 105 (236)
T cd03267 29 RKYREVEALKGISFTIEK---GEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQ 105 (236)
T ss_pred cccCCeeeeeceeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccc
Confidence 566778899999999999 9999999999999999999999987 4444444321 11 1
Q ss_pred cCCCCCHHHHHHHh----C--chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-
Q 025114 95 SVDGTSVAEIFKLY----G--EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL- 163 (257)
Q Consensus 95 ~~~~~~v~e~~~~~----g--~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L- 163 (257)
.+...++.+.+... + .....+...++++.+++.+ +.+..||||++|++.+++++. +|++++||||+++|
T Consensus 106 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 106 LWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 11245666665331 1 1112233456777777753 678999999999999998876 79999999999998
Q ss_pred ----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHH
Q 025114 164 ----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEE 200 (257)
Q Consensus 164 ----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~ 200 (257)
+.++++. +.+++.++|+++.+..+| |++..|.+|
T Consensus 186 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~---d~i~~l~~G 230 (236)
T cd03267 186 VVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALA---RRVLVIDKG 230 (236)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhC---CEEEEEeCC
Confidence 3444433 678999999965554444 554444333
No 252
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.92 E-value=1.4e-25 Score=211.98 Aligned_cols=175 Identities=21% Similarity=0.191 Sum_probs=125.9
Q ss_pred CcceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh-----CCceecchhh------h-
Q 025114 25 SASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL-----GYSFFDCDTL------I- 92 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l-----g~~~~d~~~~------~- 92 (257)
..++|+++|+++.|+++.+|+++||+|.+ |++++|+||||||||||+|+|+|++ |.+++++..+ .
T Consensus 257 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~---Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~ 333 (490)
T PRK10938 257 NEPRIVLNNGVVSYNDRPILHNLSWQVNP---GEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWD 333 (490)
T ss_pred CCceEEEeceEEEECCeeEEeeceEEEcC---CCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHH
Confidence 34689999999999988899999999999 9999999999999999999999975 2233433211 0
Q ss_pred --------hhc---CC--CCCHHHHHHHh-----C-----chHHHHHHHHHHHHhcccC----ccccccChhHhHHHHHH
Q 025114 93 --------EQS---VD--GTSVAEIFKLY-----G-----EGFFREKETEVLQKLSLMR----QLVVSTGGGAVTRPINW 145 (257)
Q Consensus 93 --------~~~---~~--~~~v~e~~~~~-----g-----~~~~~~~~~~~l~~l~~~~----~~v~~lsgG~~qr~~~a 145 (257)
.+. .. ..++.+++... + ....++...++++.+++.+ +++.+|||||+||+.++
T Consensus 334 ~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la 413 (490)
T PRK10938 334 IKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIV 413 (490)
T ss_pred HHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHH
Confidence 000 00 12344443210 0 0111234567888888753 67899999999999999
Q ss_pred HHhh-CCcEEEEECCHHHH-----------HHHHHhcC-CCCccccCCCCCCch-hhHHHHHHHHHHHHHHHHH
Q 025114 146 RYMQ-KGISVWLDVPLEAL-----------AQRIAAVG-TDSRPLLHQCESGDA-YTEALNRLSTLWEERGEAY 205 (257)
Q Consensus 146 ~~l~-~~~vl~LDep~~~L-----------~~rl~~~g-~~~~~~~h~~~~~~~-~~~~~~~v~~l~~~r~~~y 205 (257)
+++. +|++++||||+++| ++++++.+ .+++.++||++.+.. +| +++..|.+|++..|
T Consensus 414 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~---d~v~~l~~G~i~~~ 484 (490)
T PRK10938 414 RALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACIT---HRLEFVPDGDIYRY 484 (490)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhh---eeEEEecCCceEEe
Confidence 8876 79999999999998 34554454 358999999887765 35 77766766664433
No 253
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=5e-26 Score=198.74 Aligned_cols=165 Identities=16% Similarity=0.131 Sum_probs=123.3
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---------CCceecchhhhh---
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---------GYSFFDCDTLIE--- 93 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---------g~~~~d~~~~~~--- 93 (257)
.+.+.++++++.|+++.+|+++||++++ |++++|+|+||||||||+|+|+|++ |.+++++.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~ 82 (261)
T PRK14263 6 PIVMDCKLDKIFYGNFMAVRDSHVPIRK---NEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGV 82 (261)
T ss_pred CceEEEEeEEEEeCCEEEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecccccc
Confidence 4578999999999999999999999999 9999999999999999999999986 334555543210
Q ss_pred ------h---------cCCCCCHHHHHHHhC-----chHHHHHHHHHHHHhcccC-------ccccccChhHhHHHHHHH
Q 025114 94 ------Q---------SVDGTSVAEIFKLYG-----EGFFREKETEVLQKLSLMR-------QLVVSTGGGAVTRPINWR 146 (257)
Q Consensus 94 ------~---------~~~~~~v~e~~~~~g-----~~~~~~~~~~~l~~l~~~~-------~~v~~lsgG~~qr~~~a~ 146 (257)
. .+...++.+.+.... .....+...++++.+++.+ +.+..||||++||+.+++
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~lar 162 (261)
T PRK14263 83 DPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIAR 162 (261)
T ss_pred chHhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHH
Confidence 0 012456766664321 1112234556777777632 567889999999999998
Q ss_pred Hhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHH
Q 025114 147 YMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTL 197 (257)
Q Consensus 147 ~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l 197 (257)
++. +|++++||||+++| ++++. .+.+++.++|+++.+..+| |++..+
T Consensus 163 al~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~~~~---d~v~~l 221 (261)
T PRK14263 163 AIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQQAIRVA---DTTAFF 221 (261)
T ss_pred HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhC---CEEEEE
Confidence 876 79999999999998 34443 3678889999977666666 776555
No 254
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.92 E-value=3.7e-26 Score=222.05 Aligned_cols=172 Identities=22% Similarity=0.233 Sum_probs=123.4
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhh---hhhc--C
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTL---IEQS--V 96 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~---~~~~--~ 96 (257)
|++|+++||++.|+++.+|+|+||+|.+ |++++|+||||||||||+|+|+|.+ |.+.++++.. ..+. .
T Consensus 1 m~~l~i~~ls~~~~~~~il~~is~~i~~---Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~ 77 (635)
T PRK11147 1 MSLISIHGAWLSFSDAPLLDNAELHIED---NERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPR 77 (635)
T ss_pred CcEEEEeeEEEEeCCceeEeCcEEEECC---CCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCC
Confidence 4579999999999999999999999999 9999999999999999999999987 3344443210 0000 0
Q ss_pred -CCCCHHHHH------------------------------HHhC----------chHHHHHHHHHHHHhccc-Ccccccc
Q 025114 97 -DGTSVAEIF------------------------------KLYG----------EGFFREKETEVLQKLSLM-RQLVVST 134 (257)
Q Consensus 97 -~~~~v~e~~------------------------------~~~g----------~~~~~~~~~~~l~~l~~~-~~~v~~l 134 (257)
...++.+.+ .... ......+..++++.+++. ++++..|
T Consensus 78 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~L 157 (635)
T PRK11147 78 NVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSL 157 (635)
T ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhc
Confidence 011222111 0000 001123455678888874 4789999
Q ss_pred ChhHhHHHHHHHHhh-CCcEEEEECCHHHHH--------HHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHH
Q 025114 135 GGGAVTRPINWRYMQ-KGISVWLDVPLEALA--------QRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGE 203 (257)
Q Consensus 135 sgG~~qr~~~a~~l~-~~~vl~LDep~~~L~--------~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~ 203 (257)
|||++||+.++++|. +|++++|||||++|+ +-|...+.++++++||...+..+| +++..|.+|++.
T Consensus 158 SgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~---d~i~~L~~G~i~ 232 (635)
T PRK11147 158 SGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMA---TRIVDLDRGKLV 232 (635)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhc---CeEEEEECCEEE
Confidence 999999999998876 799999999999982 333333458899999977666666 677666666554
No 255
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.92 E-value=6.7e-26 Score=202.45 Aligned_cols=183 Identities=20% Similarity=0.206 Sum_probs=148.8
Q ss_pred CcceEEecceeeeeC-----------ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---CCceecchh
Q 025114 25 SASVLESGNVHAPID-----------EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---GYSFFDCDT 90 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~-----------~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---g~~~~d~~~ 90 (257)
..+.|+.+++.+.|. ...++++|||++++ |+.++|+|.||||||||++.|.+++ |.+++++.+
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~---gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~ 349 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRR---GQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQD 349 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecC---CCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCcc
Confidence 346899999998882 24589999999999 9999999999999999999999998 567777765
Q ss_pred hhhh------------------cC----CCCCHHHHHHHh----C----chHHHHHHHHHHHHhcccC----ccccccCh
Q 025114 91 LIEQ------------------SV----DGTSVAEIFKLY----G----EGFFREKETEVLQKLSLMR----QLVVSTGG 136 (257)
Q Consensus 91 ~~~~------------------~~----~~~~v~e~~~~~----g----~~~~~~~~~~~l~~l~~~~----~~v~~lsg 136 (257)
+... .+ +.+++.+++... . ...-.+++.++|+.+|+.. +++.++||
T Consensus 350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSG 429 (534)
T COG4172 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSG 429 (534)
T ss_pred ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCc
Confidence 5211 11 356788876542 1 1122345678899999865 89999999
Q ss_pred hHhHHHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHH
Q 025114 137 GAVTRPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGE 203 (257)
Q Consensus 137 G~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~ 203 (257)
||+||.++|+++. +|.+++|||||+.| ++.|++. |.+...++||+.-+..+| +++..|.+|+++
T Consensus 430 GQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~---~~viVm~~GkiV 506 (534)
T COG4172 430 GQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALC---HRVIVMRDGKIV 506 (534)
T ss_pred chhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhh---ceEEEEeCCEEe
Confidence 9999999999887 89999999999998 4666544 889999999988888888 889999999999
Q ss_pred HHhcccceec
Q 025114 204 AYANANARVS 213 (257)
Q Consensus 204 ~y~~~~~~~~ 213 (257)
..|+++.+++
T Consensus 507 E~G~~~~if~ 516 (534)
T COG4172 507 EQGPTEAVFA 516 (534)
T ss_pred eeCCHHHHhc
Confidence 9999988874
No 256
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=3.5e-26 Score=193.79 Aligned_cols=153 Identities=18% Similarity=0.191 Sum_probs=112.6
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh------------
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI------------ 92 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~------------ 92 (257)
+++ ||+|+|+++.+ |+||+|++ ++++|+||||||||||+++|+|++ |.+++++.++.
T Consensus 2 ~~~-~l~~~~~~~~~--~vsl~i~~----e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 74 (214)
T cd03297 2 LCV-DIEKRLPDFTL--KIDFDLNE----EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ 74 (214)
T ss_pred cee-eeeEecCCeee--CceEEEcc----eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHh
Confidence 345 99999999876 99999983 899999999999999999999987 44455443211
Q ss_pred ------hh---cCCCCCHHHHHHHhCc----hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEE
Q 025114 93 ------EQ---SVDGTSVAEIFKLYGE----GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVW 155 (257)
Q Consensus 93 ------~~---~~~~~~v~e~~~~~g~----~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~ 155 (257)
.+ .+...++.+.+..... ...++...++++.+++.+ +.+..||||++||+.+++++. +|++++
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 154 (214)
T cd03297 75 RKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLL 154 (214)
T ss_pred hcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 00 1124677776643211 112334557888888754 788999999999999998876 799999
Q ss_pred EECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhh
Q 025114 156 LDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYT 188 (257)
Q Consensus 156 LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~ 188 (257)
||||+++| ++++++. |.+++.++|+++.+..+|
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~ 199 (214)
T cd03297 155 LDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLA 199 (214)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhc
Confidence 99999998 3444443 788999999965544444
No 257
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.92 E-value=1.8e-26 Score=198.53 Aligned_cols=166 Identities=22% Similarity=0.237 Sum_probs=114.6
Q ss_pred EEecceeeeeCc---cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-------h
Q 025114 29 LESGNVHAPIDE---AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE-------Q 94 (257)
Q Consensus 29 l~~~~l~~~~~~---~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~-------~ 94 (257)
|+++|+++.|++ +++|+++||++++ |++++|+|+||||||||+++|+|++ |..++++.++.. .
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~---Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPP---GKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRS 77 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecC---CCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHh
Confidence 478999999964 4699999999999 9999999999999999999999997 445555533210 0
Q ss_pred ---------cCCCCCHHHHHHHhCchHHHHHHH---------HHHHHh--cc---cCccccccChhHhHHHHHHHHhh-C
Q 025114 95 ---------SVDGTSVAEIFKLYGEGFFREKET---------EVLQKL--SL---MRQLVVSTGGGAVTRPINWRYMQ-K 150 (257)
Q Consensus 95 ---------~~~~~~v~e~~~~~g~~~~~~~~~---------~~l~~l--~~---~~~~v~~lsgG~~qr~~~a~~l~-~ 150 (257)
.+...++.+.+.........+... +.+..+ ++ ..+.+..||||++||+.+++++. +
T Consensus 78 ~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~ 157 (238)
T cd03249 78 QIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRN 157 (238)
T ss_pred hEEEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcC
Confidence 011235666554321110011111 122222 22 12567899999999999998876 7
Q ss_pred CcEEEEECCHHHHH-----------HHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHH
Q 025114 151 GISVWLDVPLEALA-----------QRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERG 202 (257)
Q Consensus 151 ~~vl~LDep~~~L~-----------~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~ 202 (257)
|++++||||+++|+ +.+. .|.++++++|+++.+. +| |++..|.+|++
T Consensus 158 p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~-~~---d~v~~l~~G~i 215 (238)
T cd03249 158 PKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIR-NA---DLIAVLQNGQV 215 (238)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHh-hC---CEEEEEECCEE
Confidence 99999999999982 3333 5778899999976554 55 66656656554
No 258
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=4e-26 Score=210.35 Aligned_cols=178 Identities=21% Similarity=0.233 Sum_probs=138.3
Q ss_pred eEEecceeeeeCccc-cccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---CCceecchhhhhhc--------
Q 025114 28 VLESGNVHAPIDEAQ-VLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---GYSFFDCDTLIEQS-------- 95 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~-~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---g~~~~d~~~~~~~~-------- 95 (257)
.|+++||++.|++++ +|+++||+|++ |+.++|+|+|||||||++|+|.+++ |.+++||.++.+-.
T Consensus 351 ~I~F~dV~f~y~~k~~iL~gvsf~I~k---GekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~I 427 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKRKVLKGVSFTIPK---GEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSI 427 (591)
T ss_pred cEEEEeeEEEeCCCCceecceeEEecC---CCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhhe
Confidence 499999999999876 99999999999 9999999999999999999999988 77899998764321
Q ss_pred --------CCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC--------------ccccccChhHhHHHHHHHHhh-CCc
Q 025114 96 --------VDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR--------------QLVVSTGGGAVTRPINWRYMQ-KGI 152 (257)
Q Consensus 96 --------~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~--------------~~v~~lsgG~~qr~~~a~~l~-~~~ 152 (257)
.+.-|+..++.......-.+.+-+++++.++++ ..-..|||||+||+.++|++. +|+
T Consensus 428 g~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~ 507 (591)
T KOG0057|consen 428 GVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAP 507 (591)
T ss_pred eEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCC
Confidence 124466666665443333344455566666543 445679999999999998765 799
Q ss_pred EEEEECCHHHHH--------HHHHh--cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 153 SVWLDVPLEALA--------QRIAA--VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 153 vl~LDep~~~L~--------~rl~~--~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
++++||||+.|+ +-+.. .+.|++++.|+++....+ |++..+.+|++..||+.++.+
T Consensus 508 Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~----DkI~~l~nG~v~e~gth~ell 573 (591)
T KOG0057|consen 508 ILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDF----DKIIVLDNGTVKEYGTHSELL 573 (591)
T ss_pred eEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcC----CEEEEEECCeeEEeccHHHHh
Confidence 999999999983 22222 478999999998765543 888888899888888776655
No 259
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2.7e-26 Score=189.38 Aligned_cols=147 Identities=24% Similarity=0.379 Sum_probs=96.7
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhhhcCCCCCHHHH
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIEQSVDGTSVAEI 104 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~~~~~~~~v~e~ 104 (257)
|+++|+++.|+++++++++||++++ |++++|+||||||||||+|+|+|.+ |.+++++.++.... .+....
T Consensus 1 i~~~~l~~~~~~~~~l~~i~~~i~~---G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~---~~~~~~ 74 (178)
T cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEA---GEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLE---DELPPL 74 (178)
T ss_pred CEEEEEEEEECCeEEEeeeeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccc---hhHHHH
Confidence 4789999999988899999999999 9999999999999999999999987 33455443221100 000110
Q ss_pred HHHhCchHHHHHHHHHHHHhcccCccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhc-C
Q 025114 105 FKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAV-G 171 (257)
Q Consensus 105 ~~~~g~~~~~~~~~~~l~~l~~~~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~-g 171 (257)
....+. .+.. ......+...+.....||||++||+.+++++. +|++++||||+++| ++++.+. +
T Consensus 75 ~~~i~~-~~q~--~~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~ 151 (178)
T cd03229 75 RRRIGM-VFQD--FALFPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLG 151 (178)
T ss_pred hhcEEE-EecC--CccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 000000 0000 00000000000111119999999999998876 79999999999998 3444444 6
Q ss_pred CCCccccCCCCCC
Q 025114 172 TDSRPLLHQCESG 184 (257)
Q Consensus 172 ~~~~~~~h~~~~~ 184 (257)
.+++.++|+.+..
T Consensus 152 ~tiii~sH~~~~~ 164 (178)
T cd03229 152 ITVVLVTHDLDEA 164 (178)
T ss_pred CEEEEEeCCHHHH
Confidence 7888999985443
No 260
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=4.3e-26 Score=190.40 Aligned_cols=146 Identities=25% Similarity=0.243 Sum_probs=103.6
Q ss_pred ceEEecceeeeeCc----cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh------CCceecchhhhhh--
Q 025114 27 SVLESGNVHAPIDE----AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL------GYSFFDCDTLIEQ-- 94 (257)
Q Consensus 27 ~~l~~~~l~~~~~~----~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l------g~~~~d~~~~~~~-- 94 (257)
+.|+++|+++.|++ +.+|+++||++++ |++++|+||||||||||+|+|+|.. |..++++.++...
T Consensus 2 ~~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~ 78 (192)
T cd03232 2 SVLTWKNLNYTVPVKGGKRQLLNNISGYVKP---GTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQ 78 (192)
T ss_pred cEEEEeeeEEEecCCCCceEeEEccEEEEeC---CcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhh
Confidence 46899999999974 6799999999999 9999999999999999999999964 3345554332100
Q ss_pred -----------cCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccCccccccChhHhHHHHHHHHhh-CCcEEEEECCHHH
Q 025114 95 -----------SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEA 162 (257)
Q Consensus 95 -----------~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~ 162 (257)
.+...++.+++... ..+ ..||||++||+.+++++. +|++++||||+++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~-------------~~~-------~~LSgGe~qrv~la~al~~~p~vlllDEP~~~ 138 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFS-------------ALL-------RGLSVEQRKRLTIGVELAAKPSILFLDEPTSG 138 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHH-------------HHH-------hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcC
Confidence 00112222222110 000 189999999999998876 7999999999999
Q ss_pred H-----------HHHHHhcCCCCccccCCCCC-CchhhHHHHHHHHHH
Q 025114 163 L-----------AQRIAAVGTDSRPLLHQCES-GDAYTEALNRLSTLW 198 (257)
Q Consensus 163 L-----------~~rl~~~g~~~~~~~h~~~~-~~~~~~~~~~v~~l~ 198 (257)
| ++++++.+.++++++|+++. +..+| |++..|.
T Consensus 139 LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~---d~i~~l~ 183 (192)
T cd03232 139 LDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKF---DRLLLLK 183 (192)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhC---CEEEEEc
Confidence 8 34444457889999999652 33344 5544443
No 261
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.92 E-value=2e-26 Score=187.65 Aligned_cols=133 Identities=23% Similarity=0.220 Sum_probs=98.4
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC----CceecchhhhhhcCCCCCHHHH
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG----YSFFDCDTLIEQSVDGTSVAEI 104 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg----~~~~d~~~~~~~~~~~~~v~e~ 104 (257)
|+++|+++.|+++++++++||++++ |++++|+||||||||||+++|+|++. ..++++.++. ..+..+
T Consensus 1 l~~~~l~~~~~~~~vl~~i~~~i~~---Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~-----~~~~~~- 71 (163)
T cd03216 1 LELRGITKRFGGVKALDGVSLSVRR---GEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVS-----FASPRD- 71 (163)
T ss_pred CEEEEEEEEECCeEEEeeeEEEEeC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECC-----cCCHHH-
Confidence 4789999999988999999999999 99999999999999999999999873 3344332211 111100
Q ss_pred HHHhCchHHHHHHHHHHHHhcccCccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhcCC
Q 025114 105 FKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGT 172 (257)
Q Consensus 105 ~~~~g~~~~~~~~~~~l~~l~~~~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~ 172 (257)
..-..++ .+.+|||||+||+.+++++. +|.+++||||+++| ++++...+.
T Consensus 72 --------------~~~~~i~----~~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~ 133 (163)
T cd03216 72 --------------ARRAGIA----MVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGV 133 (163)
T ss_pred --------------HHhcCeE----EEEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCC
Confidence 0001122 23349999999999998876 79999999999998 344544577
Q ss_pred CCccccCCCCCCchhh
Q 025114 173 DSRPLLHQCESGDAYT 188 (257)
Q Consensus 173 ~~~~~~h~~~~~~~~~ 188 (257)
+++.++|+++.+..+|
T Consensus 134 tiii~sh~~~~~~~~~ 149 (163)
T cd03216 134 AVIFISHRLDEVFEIA 149 (163)
T ss_pred EEEEEeCCHHHHHHhC
Confidence 8899999955444433
No 262
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.92 E-value=5.9e-26 Score=194.70 Aligned_cols=162 Identities=21% Similarity=0.202 Sum_probs=121.7
Q ss_pred ccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh---------hh---cCCCCCHHHHHHH
Q 025114 44 LKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI---------EQ---SVDGTSVAEIFKL 107 (257)
Q Consensus 44 l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~---------~~---~~~~~~v~e~~~~ 107 (257)
|+++||+|.+ |++++|+||||||||||+|+|+|++ |.+++++.++. .+ .+...++.+++..
T Consensus 1 l~~is~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQ---GEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHH
Confidence 5799999999 9999999999999999999999997 44566554321 11 1224678877654
Q ss_pred h------Cc--hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-----------H
Q 025114 108 Y------GE--GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL-----------A 164 (257)
Q Consensus 108 ~------g~--~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~ 164 (257)
. +. ...++...++++.+++.+ +.+..||||++||+.+++++. +|++++||||+++| +
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l 157 (230)
T TIGR01184 78 AVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEEL 157 (230)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence 2 11 111233456788888754 788999999999999998886 79999999999998 3
Q ss_pred HHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccce
Q 025114 165 QRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANAR 211 (257)
Q Consensus 165 ~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~ 211 (257)
.++.+. |.++++++|+++.+..+| |++..|.+|++...++...+
T Consensus 158 ~~~~~~~~~tii~~sH~~~~~~~~~---d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 158 MQIWEEHRVTVLMVTHDVDEALLLS---DRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhc---CEEEEEeCCcEecccCceec
Confidence 444433 788999999987777777 88888888888777655433
No 263
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2.8e-26 Score=197.06 Aligned_cols=165 Identities=21% Similarity=0.238 Sum_probs=112.6
Q ss_pred EEecceeeeeC-ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-------h--
Q 025114 29 LESGNVHAPID-EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE-------Q-- 94 (257)
Q Consensus 29 l~~~~l~~~~~-~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~-------~-- 94 (257)
|+++|+++.|+ ++.+|+++||+|.+ |++++|+||||||||||+++|+|++ |.+++++.++.. .
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~---Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i 77 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPA---GKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAI 77 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhE
Confidence 47899999996 57799999999999 9999999999999999999999987 455665543211 0
Q ss_pred -------cCCCCCHHHHHHHhCchHHHHHHH---------HHHHHh--ccc---CccccccChhHhHHHHHHHHhh-CCc
Q 025114 95 -------SVDGTSVAEIFKLYGEGFFREKET---------EVLQKL--SLM---RQLVVSTGGGAVTRPINWRYMQ-KGI 152 (257)
Q Consensus 95 -------~~~~~~v~e~~~~~g~~~~~~~~~---------~~l~~l--~~~---~~~v~~lsgG~~qr~~~a~~l~-~~~ 152 (257)
.+...++.+.+............. +.+..+ ++. ++.+..||||++||+.+++++. +|+
T Consensus 78 ~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ 157 (236)
T cd03253 78 GVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP 157 (236)
T ss_pred EEECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 012346666664422111011111 222222 211 2457899999999999998886 799
Q ss_pred EEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHH
Q 025114 153 SVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEER 201 (257)
Q Consensus 153 vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r 201 (257)
+++||||+++| +.++.+ |.++++++|+.+.+. .| |++..+.+|+
T Consensus 158 llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~-~~---d~~~~l~~g~ 212 (236)
T cd03253 158 ILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIV-NA---DKIIVLKDGR 212 (236)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHH-hC---CEEEEEECCE
Confidence 99999999988 233333 778899999955432 23 5554444443
No 264
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.92 E-value=8.5e-26 Score=187.04 Aligned_cols=155 Identities=19% Similarity=0.272 Sum_probs=102.0
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhhhcC---CCC
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIEQSV---DGT 99 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~~~~---~~~ 99 (257)
++|+++|+++.| +|+++||++++ |++++|+|+||||||||+++|+|++ |..++++.++..... ...
T Consensus 3 ~~l~~~~l~~~~----~l~~vs~~i~~---G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (182)
T cd03215 3 PVLEVRGLSVKG----AVRDVSFEVRA---GEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75 (182)
T ss_pred cEEEEeccEEEe----eecceEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhC
Confidence 479999999999 89999999999 9999999999999999999999987 445565543211000 000
Q ss_pred CHHHHHHHhC-chHH-HHHHHHHHHHhcccCccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-----------HH
Q 025114 100 SVAEIFKLYG-EGFF-REKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL-----------AQ 165 (257)
Q Consensus 100 ~v~e~~~~~g-~~~~-~~~~~~~l~~l~~~~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~~ 165 (257)
.+.-+++... ...+ .....+.+. .. ..|||||+||+.+++++. +|++++||||+++| ++
T Consensus 76 ~i~~~~q~~~~~~~~~~~t~~e~l~---~~----~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~ 148 (182)
T cd03215 76 GIAYVPEDRKREGLVLDLSVAENIA---LS----SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIR 148 (182)
T ss_pred CeEEecCCcccCcccCCCcHHHHHH---HH----hhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHH
Confidence 0000000000 0000 000111111 00 019999999999998876 79999999999998 34
Q ss_pred HHHhcCCCCccccCCCCCCchhhHHHHHHHHHH
Q 025114 166 RIAAVGTDSRPLLHQCESGDAYTEALNRLSTLW 198 (257)
Q Consensus 166 rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~ 198 (257)
++...+.+++.++|+++.+..+| |++..+.
T Consensus 149 ~~~~~~~tiii~sh~~~~~~~~~---d~v~~l~ 178 (182)
T cd03215 149 ELADAGKAVLLISSELDELLGLC---DRILVMY 178 (182)
T ss_pred HHHHCCCEEEEEeCCHHHHHHhC---CEEEEec
Confidence 44445788899999966555555 5543433
No 265
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.92 E-value=6.7e-26 Score=192.85 Aligned_cols=151 Identities=21% Similarity=0.208 Sum_probs=107.2
Q ss_pred EEecceeeeeCc--cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-------h-
Q 025114 29 LESGNVHAPIDE--AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE-------Q- 94 (257)
Q Consensus 29 l~~~~l~~~~~~--~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~-------~- 94 (257)
|+++|+++.|++ +.+|+++||+|++ |++++|+||||||||||+++|+|.+ |.+++++..+.. .
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKP---GEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECC---CCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 789999999964 4799999999999 9999999999999999999999987 445565543211 0
Q ss_pred --------cCCCCCHHHHHHHhCchHHHHHHHHHHHHhccc--------------CccccccChhHhHHHHHHHHhh-CC
Q 025114 95 --------SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLM--------------RQLVVSTGGGAVTRPINWRYMQ-KG 151 (257)
Q Consensus 95 --------~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~--------------~~~v~~lsgG~~qr~~~a~~l~-~~ 151 (257)
.+...++.+.+..... ...+...++++.+++. ++.+..||||++|++.+++++. +|
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEEECCCCccccchHHHHhCcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 0112356555432211 1112223334443332 2478899999999999998876 79
Q ss_pred cEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCC
Q 025114 152 ISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESG 184 (257)
Q Consensus 152 ~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~ 184 (257)
.+++||||+++| ++++. .+.+++.++|+++.+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~ 201 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAF-KDCTVLTIAHRLDTI 201 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHH
Confidence 999999999998 23332 356788889985443
No 266
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.92 E-value=1.4e-25 Score=191.54 Aligned_cols=156 Identities=20% Similarity=0.200 Sum_probs=111.6
Q ss_pred CcceEEecceeeeeCc---cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh----
Q 025114 25 SASVLESGNVHAPIDE---AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE---- 93 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~---~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~---- 93 (257)
...+|+++|+++.|++ ..+|+++||+|++ |++++|+||||||||||+++|+|++ |.+++++..+..
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~ 84 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHP---GEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHK 84 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHH
Confidence 4568999999999975 4699999999999 9999999999999999999999997 445555543211
Q ss_pred ---h---------cCCCCCHHHHHHHhCc----hHHHHH-----HHHHHHHh--ccc---CccccccChhHhHHHHHHHH
Q 025114 94 ---Q---------SVDGTSVAEIFKLYGE----GFFREK-----ETEVLQKL--SLM---RQLVVSTGGGAVTRPINWRY 147 (257)
Q Consensus 94 ---~---------~~~~~~v~e~~~~~g~----~~~~~~-----~~~~l~~l--~~~---~~~v~~lsgG~~qr~~~a~~ 147 (257)
. .+...++.+.+..... ....+. ..++++.+ ++. ++.+..||||++||+.++++
T Consensus 85 ~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~lara 164 (226)
T cd03248 85 YLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARA 164 (226)
T ss_pred HHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHH
Confidence 0 0012355555432111 001111 23456666 443 36789999999999999988
Q ss_pred hh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCC
Q 025114 148 MQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESG 184 (257)
Q Consensus 148 l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~ 184 (257)
+. +|++++||||+++| ++++.. +.++++++|+++.+
T Consensus 165 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~ 212 (226)
T cd03248 165 LIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLSTV 212 (226)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHHH
Confidence 76 79999999999988 333332 56888999996543
No 267
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.91 E-value=7.3e-26 Score=214.57 Aligned_cols=171 Identities=20% Similarity=0.252 Sum_probs=127.7
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhh----------
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTL---------- 91 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~---------- 91 (257)
.++++++|+++ .+|+++||+|.+ |++++|+||||||||||+|+|+|++ |.+.+++.++
T Consensus 255 ~~~l~~~~l~~-----~~l~~vsl~i~~---Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~ 326 (501)
T PRK10762 255 EVRLKVDNLSG-----PGVNDVSFTLRK---GEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLA 326 (501)
T ss_pred CcEEEEeCccc-----CCcccceEEEcC---CcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHH
Confidence 35899999985 379999999999 9999999999999999999999987 4455554221
Q ss_pred -----hhh------cCCCCCHHHHHHHhCc------------hHHHHHHHHHHHHhccc----CccccccChhHhHHHHH
Q 025114 92 -----IEQ------SVDGTSVAEIFKLYGE------------GFFREKETEVLQKLSLM----RQLVVSTGGGAVTRPIN 144 (257)
Q Consensus 92 -----~~~------~~~~~~v~e~~~~~g~------------~~~~~~~~~~l~~l~~~----~~~v~~lsgG~~qr~~~ 144 (257)
+.+ .+...++.+.+..... ...++...++++.+++. ++++..|||||+||+.+
T Consensus 327 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~l 406 (501)
T PRK10762 327 NGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAI 406 (501)
T ss_pred CCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHH
Confidence 011 1124677776643110 11123355788888873 37899999999999999
Q ss_pred HHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhc
Q 025114 145 WRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN 207 (257)
Q Consensus 145 a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~ 207 (257)
|+++. +|.+++|||||++| ++++...|.+++.++||++.+..+| |++..+.+|++...++
T Consensus 407 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~---d~v~~l~~G~i~~~~~ 478 (501)
T PRK10762 407 ARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMS---DRILVMHEGRISGEFT 478 (501)
T ss_pred HHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhC---CEEEEEECCEEEEEec
Confidence 98886 79999999999998 4555556889999999988777777 7776676665543333
No 268
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.91 E-value=5.6e-26 Score=238.70 Aligned_cols=178 Identities=21% Similarity=0.237 Sum_probs=139.1
Q ss_pred CcceEEecceeeeeCc--cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh------
Q 025114 25 SASVLESGNVHAPIDE--AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI------ 92 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~--~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~------ 92 (257)
...+|+++||+|.|++ +.+|+|+||+|++ ||+++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 1934 ~~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~---GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~ 2010 (2272)
T TIGR01257 1934 KTDILRLNELTKVYSGTSSPAVDRLCVGVRP---GECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDV 2010 (2272)
T ss_pred CCceEEEEEEEEEECCCCceEEEeeEEEEcC---CcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHH
Confidence 3458999999999986 6799999999999 9999999999999999999999997 55666654331
Q ss_pred -------hh---cCCCCCHHHHHHHh----Cc--hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCc
Q 025114 93 -------EQ---SVDGTSVAEIFKLY----GE--GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGI 152 (257)
Q Consensus 93 -------~~---~~~~~~v~e~~~~~----g~--~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~ 152 (257)
.+ .+..+|+.|.+... |. ...++...++++.+++.+ +.+..||||++||+.+|+++. +|+
T Consensus 2011 r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~ 2090 (2272)
T TIGR01257 2011 HQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPP 2090 (2272)
T ss_pred hhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 00 12356888876543 21 122334557788888854 789999999999999998776 799
Q ss_pred EEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcc
Q 025114 153 SVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANA 208 (257)
Q Consensus 153 vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~ 208 (257)
+++||||+++| ++++++.|.+++.++|+++++..+| |++..|.+|++...|++
T Consensus 2091 VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lc---DrV~IL~~G~i~~~Gs~ 2154 (2272)
T TIGR01257 2091 LVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALC---TRLAIMVKGAFQCLGTI 2154 (2272)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC---CEEEEEECCEEEEECCH
Confidence 99999999998 4555556889999999999888888 88877777766544443
No 269
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.91 E-value=5.7e-26 Score=189.97 Aligned_cols=146 Identities=24% Similarity=0.255 Sum_probs=104.2
Q ss_pred eEEecceeeeeCc------cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh--C----Cceecchhhhhhc
Q 025114 28 VLESGNVHAPIDE------AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL--G----YSFFDCDTLIEQS 95 (257)
Q Consensus 28 ~l~~~~l~~~~~~------~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l--g----~~~~d~~~~~~~~ 95 (257)
.|+++||++.|++ +.+|+++||++++ |++++|+||||||||||+++|+|++ . ...+++.++....
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~---Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKP---GELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHh
Confidence 4789999999975 6799999999999 9999999999999999999999987 3 3455554321100
Q ss_pred C--------------CCCCHHHHHHHhCchHHHHHHHHHHHHhcccCccccccChhHhHHHHHHHHhh-CCcEEEEECCH
Q 025114 96 V--------------DGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPL 160 (257)
Q Consensus 96 ~--------------~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~ 160 (257)
. .+.++.+.+.. ... ...||||++||+.+++++. +|++++||||+
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~-------------~~~-------~~~LS~G~~qrv~laral~~~p~illlDEP~ 139 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMF-------------AAK-------LRGLSGGERKRVSIALELVSNPSLLFLDEPT 139 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHH-------------HHH-------hccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 0 01122221110 000 1189999999999998876 79999999999
Q ss_pred HHH-----------HHHHHhcCCCCccccCCCC-CCchhhHHHHHHHHHHH
Q 025114 161 EAL-----------AQRIAAVGTDSRPLLHQCE-SGDAYTEALNRLSTLWE 199 (257)
Q Consensus 161 ~~L-----------~~rl~~~g~~~~~~~h~~~-~~~~~~~~~~~v~~l~~ 199 (257)
++| ++++.+.+.+++.++|+++ ....+| |++..|.+
T Consensus 140 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~---d~v~~l~~ 187 (194)
T cd03213 140 SGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELF---DKLLLLSQ 187 (194)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhc---CEEEEEeC
Confidence 988 3445445788999999964 333344 55544433
No 270
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.91 E-value=1.4e-25 Score=218.13 Aligned_cols=178 Identities=24% Similarity=0.202 Sum_probs=132.9
Q ss_pred eEEecceeeeeCcc--ccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhhh-------
Q 025114 28 VLESGNVHAPIDEA--QVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIEQ------- 94 (257)
Q Consensus 28 ~l~~~~l~~~~~~~--~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~~------- 94 (257)
-++++||+++|+.. .+|+|+||+|++ ||+++|+|+||||||||+|+|.|++ |.+.+|+-++-.-
T Consensus 471 ~I~~~nvsf~y~~~~~~vL~~isL~I~~---Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~ 547 (709)
T COG2274 471 EIEFENVSFRYGPDDPPVLEDLSLEIPP---GEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRR 547 (709)
T ss_pred eEEEEEEEEEeCCCCcchhhceeEEeCC---CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHh
Confidence 58999999999865 699999999999 9999999999999999999999998 5577777665211
Q ss_pred ---------cCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC--------------ccccccChhHhHHHHHHHHhh-C
Q 025114 95 ---------SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR--------------QLVVSTGGGAVTRPINWRYMQ-K 150 (257)
Q Consensus 95 ---------~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~--------------~~v~~lsgG~~qr~~~a~~l~-~ 150 (257)
..+.-|+.|++.........+...+++...+.++ ..-..|||||+||.++||++. +
T Consensus 548 ~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~ 627 (709)
T COG2274 548 QVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSK 627 (709)
T ss_pred heeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccC
Confidence 1235678888876554332233333333333211 345679999999999998886 7
Q ss_pred CcEEEEECCHHHHH--------HHHHh--cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 151 GISVWLDVPLEALA--------QRIAA--VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 151 ~~vl~LDep~~~L~--------~rl~~--~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
|.+++|||||++|+ +.|.+ .|.|++.++|.+... +.| |++..|..|++..+|+.++.+
T Consensus 628 P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti-~~a---drIiVl~~Gkiv~~gs~~ell 695 (709)
T COG2274 628 PKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTI-RSA---DRIIVLDQGKIVEQGSHEELL 695 (709)
T ss_pred CCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHh-hhc---cEEEEccCCceeccCCHHHHH
Confidence 99999999999993 33433 368999999996543 334 888888888887777665544
No 271
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.91 E-value=1.4e-25 Score=189.18 Aligned_cols=150 Identities=19% Similarity=0.193 Sum_probs=108.8
Q ss_pred ceEEecceeeeeCc--cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-------
Q 025114 27 SVLESGNVHAPIDE--AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------- 93 (257)
Q Consensus 27 ~~l~~~~l~~~~~~--~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------- 93 (257)
..|+++|+++.|++ +.+|+++||+|.+ |++++|+|+||||||||+|+|+|++ |.+++++..+..
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~---G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 81 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKA---GEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLR 81 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECC---CCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHH
Confidence 46899999999975 4799999999999 9999999999999999999999987 455666543210
Q ss_pred h---------cCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccCccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH
Q 025114 94 Q---------SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL 163 (257)
Q Consensus 94 ~---------~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L 163 (257)
. .+...++.+.+..... ...+ ++.+.+. .++.+..||||++||+.+++++. +|++++||||+++|
T Consensus 82 ~~i~~v~q~~~~~~~tv~~~l~~~~~-~~~~---~~~~~l~-~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~L 156 (207)
T cd03369 82 SSLTIIPQDPTLFSGTIRSNLDPFDE-YSDE---EIYGALR-VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASI 156 (207)
T ss_pred hhEEEEecCCcccCccHHHHhcccCC-CCHH---HHHHHhh-ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccC
Confidence 0 0113366666543221 1111 1222233 34678999999999999998876 79999999999998
Q ss_pred H--------HHHH--hcCCCCccccCCCCCC
Q 025114 164 A--------QRIA--AVGTDSRPLLHQCESG 184 (257)
Q Consensus 164 ~--------~rl~--~~g~~~~~~~h~~~~~ 184 (257)
+ +.+. ..+.+++.++|+++.+
T Consensus 157 D~~~~~~l~~~l~~~~~~~tiii~th~~~~~ 187 (207)
T cd03369 157 DYATDALIQKTIREEFTNSTILTIAHRLRTI 187 (207)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence 2 2222 1367888999996543
No 272
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.91 E-value=7.7e-26 Score=222.53 Aligned_cols=179 Identities=19% Similarity=0.193 Sum_probs=130.8
Q ss_pred ceEEecceeeeeCc--cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-------
Q 025114 27 SVLESGNVHAPIDE--AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------- 93 (257)
Q Consensus 27 ~~l~~~~l~~~~~~--~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------- 93 (257)
..|+++||+++|++ +++|+|+||+|++ |+.++|+|+||||||||+|+|+|++ |.+.+|+.++..
T Consensus 476 ~~I~~~~vsf~y~~~~~~vL~~isl~i~~---Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr 552 (710)
T TIGR03796 476 GYVELRNITFGYSPLEPPLIENFSLTLQP---GQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLA 552 (710)
T ss_pred CeEEEEEEEEecCCCCCCcccceeEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHH
Confidence 35999999999974 6799999999999 9999999999999999999999998 556777655421
Q ss_pred -------h--cCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC--------------ccccccChhHhHHHHHHHHhh-
Q 025114 94 -------Q--SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR--------------QLVVSTGGGAVTRPINWRYMQ- 149 (257)
Q Consensus 94 -------~--~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~--------------~~v~~lsgG~~qr~~~a~~l~- 149 (257)
+ .....|+.+++.........+...++++..++.+ ..-..|||||+||.++||++.
T Consensus 553 ~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~ 632 (710)
T TIGR03796 553 NSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR 632 (710)
T ss_pred hheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhh
Confidence 0 1135578888865432222333334444443321 234679999999999998775
Q ss_pred CCcEEEEECCHHHH--------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 150 KGISVWLDVPLEAL--------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 150 ~~~vl~LDep~~~L--------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
+|++++|||||++| .+.+...+.|++.++|.++... .| |++..|.+|++...|+.++++
T Consensus 633 ~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~-~~---D~Iivl~~G~i~~~G~~~~Ll 699 (710)
T TIGR03796 633 NPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIR-DC---DEIIVLERGKVVQRGTHEELW 699 (710)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hC---CEEEEEeCCEEEEecCHHHHH
Confidence 79999999999998 3455556789999999965443 24 777777777666555544433
No 273
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.91 E-value=8.4e-26 Score=214.15 Aligned_cols=167 Identities=20% Similarity=0.310 Sum_probs=125.4
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh----------
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI---------- 92 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~---------- 92 (257)
..++++|+++. .+++|+||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 256 ~~l~~~~~~~~----~~l~~isl~i~~---Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 328 (501)
T PRK11288 256 VRLRLDGLKGP----GLREPISFSVRA---GEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRA 328 (501)
T ss_pred cEEEEeccccC----CcccceeEEEeC---CcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhC
Confidence 47899999843 589999999999 9999999999999999999999987 45566553211
Q ss_pred -----hh------cCCCCCHHHHHHHhCc-----------h-HHHHHHHHHHHHhccc----CccccccChhHhHHHHHH
Q 025114 93 -----EQ------SVDGTSVAEIFKLYGE-----------G-FFREKETEVLQKLSLM----RQLVVSTGGGAVTRPINW 145 (257)
Q Consensus 93 -----~~------~~~~~~v~e~~~~~g~-----------~-~~~~~~~~~l~~l~~~----~~~v~~lsgG~~qr~~~a 145 (257)
.+ .+...++.+.+..... . ..++...++++.+++. ++++..|||||+||+.++
T Consensus 329 ~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la 408 (501)
T PRK11288 329 GIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILG 408 (501)
T ss_pred CCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHH
Confidence 00 2223567776543110 0 1112345788888873 378999999999999999
Q ss_pred HHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHH
Q 025114 146 RYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGE 203 (257)
Q Consensus 146 ~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~ 203 (257)
+++. +|.+++|||||++| ++++++.|.++++++||++.+..+| |++..+.+|++.
T Consensus 409 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~---d~i~~l~~g~i~ 475 (501)
T PRK11288 409 RWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVA---DRIVVMREGRIA 475 (501)
T ss_pred HHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhC---CEEEEEECCEEE
Confidence 8886 79999999999998 4566666889999999987777777 777666555443
No 274
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.91 E-value=3.7e-25 Score=176.95 Aligned_cols=154 Identities=23% Similarity=0.285 Sum_probs=118.2
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-------h-
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE-------Q- 94 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~-------~- 94 (257)
+.++++++...-++..+|+++||++.+ ||+++|+||+|||||||+|+++.+. |..++.|.++.. +
T Consensus 2 mlle~kq~~y~a~~a~il~~isl~v~~---Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~ 78 (223)
T COG4619 2 MLLELKQVGYLAGDAKILNNISLSVRA---GEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQ 78 (223)
T ss_pred cchHHHHHHhhcCCCeeecceeeeecC---CceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHH
Confidence 557888888888899999999999999 9999999999999999999999987 445666655411 0
Q ss_pred --------cCCCCCHHHHHHHh----CchHHHHHHHHHHHHhcccC----ccccccChhHhHHHHHHHHhh-CCcEEEEE
Q 025114 95 --------SVDGTSVAEIFKLY----GEGFFREKETEVLQKLSLMR----QLVVSTGGGAVTRPINWRYMQ-KGISVWLD 157 (257)
Q Consensus 95 --------~~~~~~v~e~~~~~----g~~~~~~~~~~~l~~l~~~~----~~v~~lsgG~~qr~~~a~~l~-~~~vl~LD 157 (257)
..+|-||.+++.+- .....+....+.|+++++.+ +.+..||||++||.++.+-|. -|++++||
T Consensus 79 VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLD 158 (223)
T COG4619 79 VSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLD 158 (223)
T ss_pred HHHHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEec
Confidence 12366777765432 11223455667888988865 789999999999999998887 69999999
Q ss_pred CCHHHHH-----------HHHH-hcCCCCccccCCCCC
Q 025114 158 VPLEALA-----------QRIA-AVGTDSRPLLHQCES 183 (257)
Q Consensus 158 ep~~~L~-----------~rl~-~~g~~~~~~~h~~~~ 183 (257)
|||+.|+ -|+- .+...+.-++||.+.
T Consensus 159 E~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dq 196 (223)
T COG4619 159 EITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQ 196 (223)
T ss_pred CchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHH
Confidence 9999982 2222 345677778898443
No 275
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.91 E-value=1.3e-25 Score=196.35 Aligned_cols=154 Identities=17% Similarity=0.122 Sum_probs=107.5
Q ss_pred ccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchh-hhh---hcCCCCCHHHHHHHh----C
Q 025114 42 QVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDT-LIE---QSVDGTSVAEIFKLY----G 109 (257)
Q Consensus 42 ~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~-~~~---~~~~~~~v~e~~~~~----g 109 (257)
.+|+++||+|.+ |++++|+||||||||||+++|+|++ |.+.+++.. ... ......++.+.+... +
T Consensus 38 ~il~~is~~i~~---Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~ 114 (264)
T PRK13546 38 FALDDISLKAYE---GDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMG 114 (264)
T ss_pred EEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcC
Confidence 489999999999 9999999999999999999999987 444555431 111 111245777766431 2
Q ss_pred c--hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhcCC
Q 025114 110 E--GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGT 172 (257)
Q Consensus 110 ~--~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~ 172 (257)
. ........++++.+++.+ +.+..|||||+|++.+++++. +|.+++||||+++| +.++++.|.
T Consensus 115 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~ 194 (264)
T PRK13546 115 FKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNK 194 (264)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCC
Confidence 1 111122234566666543 688999999999999998876 79999999999988 233444578
Q ss_pred CCccccCCCCCCchhhHHHHHHHHHHHHH
Q 025114 173 DSRPLLHQCESGDAYTEALNRLSTLWEER 201 (257)
Q Consensus 173 ~~~~~~h~~~~~~~~~~~~~~v~~l~~~r 201 (257)
+++.++|+++.+..+| +++..+.+|+
T Consensus 195 tiIiisH~~~~i~~~~---d~i~~l~~G~ 220 (264)
T PRK13546 195 TIFFVSHNLGQVRQFC---TKIAWIEGGK 220 (264)
T ss_pred EEEEEcCCHHHHHHHc---CEEEEEECCE
Confidence 8999999965544444 5554444443
No 276
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.91 E-value=1.2e-25 Score=184.59 Aligned_cols=134 Identities=28% Similarity=0.364 Sum_probs=95.1
Q ss_pred EEecceeeeeCc--cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhhhcCCCCCHH
Q 025114 29 LESGNVHAPIDE--AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIEQSVDGTSVA 102 (257)
Q Consensus 29 l~~~~l~~~~~~--~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~~~~~~~~v~ 102 (257)
|+++|+++.|++ +.+++++||++++ |++++|+||||||||||+++|+|++ |...+++.++. ..+..
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~---Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~ 72 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEP---GESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADIS-----QWDPN 72 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECC---CCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcc-----cCCHH
Confidence 478999999975 5699999999999 9999999999999999999999987 34455543321 11111
Q ss_pred HHHHHhC---c--hHHHHHHHHHHHHhcccCccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-----------HH
Q 025114 103 EIFKLYG---E--GFFREKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL-----------AQ 165 (257)
Q Consensus 103 e~~~~~g---~--~~~~~~~~~~l~~l~~~~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~~ 165 (257)
..-...+ . ..+.. .+.+.+ ||||++||+.+++++. +|++++||||+++| ++
T Consensus 73 ~~~~~i~~~~q~~~~~~~---tv~~~l---------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~ 140 (173)
T cd03246 73 ELGDHVGYLPQDDELFSG---SIAENI---------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIA 140 (173)
T ss_pred HHHhheEEECCCCccccC---cHHHHC---------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHH
Confidence 1100000 0 00000 111111 9999999999998876 79999999999998 34
Q ss_pred HHHhcCCCCccccCCCC
Q 025114 166 RIAAVGTDSRPLLHQCE 182 (257)
Q Consensus 166 rl~~~g~~~~~~~h~~~ 182 (257)
++++.|.+++.++|+++
T Consensus 141 ~~~~~~~tii~~sh~~~ 157 (173)
T cd03246 141 ALKAAGATRIVIAHRPE 157 (173)
T ss_pred HHHhCCCEEEEEeCCHH
Confidence 44445788999999854
No 277
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.5e-25 Score=211.88 Aligned_cols=170 Identities=15% Similarity=0.206 Sum_probs=124.3
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh---------
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI--------- 92 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~--------- 92 (257)
.++|+++|+++.+ +.+|+++||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 248 ~~~i~~~~l~~~~--~~~l~~vsl~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 322 (491)
T PRK10982 248 EVILEVRNLTSLR--QPSIRDVSFDLHK---GEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAIN 322 (491)
T ss_pred CcEEEEeCccccc--CcccceeeEEEeC---CcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHH
Confidence 4589999999984 4699999999999 9999999999999999999999987 44566553321
Q ss_pred ------hh------cCCCCCHHHH-----HHHh----C---chHHHHHHHHHHHHhccc----CccccccChhHhHHHHH
Q 025114 93 ------EQ------SVDGTSVAEI-----FKLY----G---EGFFREKETEVLQKLSLM----RQLVVSTGGGAVTRPIN 144 (257)
Q Consensus 93 ------~~------~~~~~~v~e~-----~~~~----g---~~~~~~~~~~~l~~l~~~----~~~v~~lsgG~~qr~~~ 144 (257)
.+ .+...++.+. +... + ....+....++++.+++. ++++.+|||||+||+.+
T Consensus 323 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~l 402 (491)
T PRK10982 323 HGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVII 402 (491)
T ss_pred CCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHH
Confidence 00 0112333221 2111 1 111123345677887763 37899999999999999
Q ss_pred HHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHH
Q 025114 145 WRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGE 203 (257)
Q Consensus 145 a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~ 203 (257)
++++. +|.+++|||||++| ++++...|.++++++||++.+..+| |++..+.+|++.
T Consensus 403 a~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~---d~v~~l~~g~i~ 470 (491)
T PRK10982 403 GRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGIT---DRILVMSNGLVA 470 (491)
T ss_pred HHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhC---CEEEEEECCEEE
Confidence 98886 79999999999998 4555556889999999987777776 777666555543
No 278
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.91 E-value=2.9e-25 Score=186.87 Aligned_cols=151 Identities=21% Similarity=0.241 Sum_probs=104.8
Q ss_pred EEecceeeeeCcc-----ccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecch-hhhhh--cC
Q 025114 29 LESGNVHAPIDEA-----QVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCD-TLIEQ--SV 96 (257)
Q Consensus 29 l~~~~l~~~~~~~-----~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~-~~~~~--~~ 96 (257)
|+++||++.|+++ .+|+++||+|++ |++++|+||||||||||+++|+|++ |.+.+++. .+..+ .+
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~---G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l 77 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPK---GELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWI 77 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECC---CCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchh
Confidence 4789999999864 699999999999 9999999999999999999999987 44444441 01111 11
Q ss_pred CCCCHHHHHHHhCchHHHHHHHHHHHHhcc--------------cCccccccChhHhHHHHHHHHhh-CCcEEEEECCHH
Q 025114 97 DGTSVAEIFKLYGEGFFREKETEVLQKLSL--------------MRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLE 161 (257)
Q Consensus 97 ~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~--------------~~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~ 161 (257)
...++.+++..... ...+...++++.+++ ..+.+..||+|++||+.+++++. +|++++||||++
T Consensus 78 ~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~ 156 (204)
T cd03250 78 QNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLS 156 (204)
T ss_pred ccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 24577776654221 111111122222211 12457889999999999998887 799999999999
Q ss_pred HHH--------HHH-H---hcCCCCccccCCCCC
Q 025114 162 ALA--------QRI-A---AVGTDSRPLLHQCES 183 (257)
Q Consensus 162 ~L~--------~rl-~---~~g~~~~~~~h~~~~ 183 (257)
+|+ +.+ . ..+.++++++|+++.
T Consensus 157 ~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~ 190 (204)
T cd03250 157 AVDAHVGRHIFENCILGLLLNNKTRILVTHQLQL 190 (204)
T ss_pred cCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHH
Confidence 981 211 1 236788889998543
No 279
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.91 E-value=2.2e-25 Score=216.71 Aligned_cols=167 Identities=22% Similarity=0.187 Sum_probs=124.1
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchh---hhhh----
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDT---LIEQ---- 94 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~---~~~~---- 94 (257)
..+|+++||++.|+++++|+++||+|.+ |++++|+||||||||||+|+|+|.+ |.++++... ++.+
T Consensus 317 ~~~l~~~~l~~~~~~~~il~~vsl~i~~---Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~ 393 (635)
T PRK11147 317 KIVFEMENVNYQIDGKQLVKDFSAQVQR---GDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAE 393 (635)
T ss_pred CceEEEeeeEEEECCeEEEcCcEEEEcC---CCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccc
Confidence 4589999999999998999999999999 9999999999999999999999987 333442110 1111
Q ss_pred cCCCCCHHHHHHHhCch----HHHHHHHHHHHHhccc----CccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH--
Q 025114 95 SVDGTSVAEIFKLYGEG----FFREKETEVLQKLSLM----RQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL-- 163 (257)
Q Consensus 95 ~~~~~~v~e~~~~~g~~----~~~~~~~~~l~~l~~~----~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L-- 163 (257)
.....++.+.+...... .......+++..+++. ++++..||||++||+.+++++. +|.+++|||||++|
T Consensus 394 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~ 473 (635)
T PRK11147 394 LDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDV 473 (635)
T ss_pred cCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 22356788876542211 1123345677877763 3789999999999999998876 79999999999998
Q ss_pred ------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHH
Q 025114 164 ------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLW 198 (257)
Q Consensus 164 ------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~ 198 (257)
.+-+...+.++++++||.+.+..+| +++..+.
T Consensus 474 ~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~---d~i~~l~ 511 (635)
T PRK11147 474 ETLELLEELLDSYQGTVLLVSHDRQFVDNTV---TECWIFE 511 (635)
T ss_pred HHHHHHHHHHHhCCCeEEEEECCHHHHHHhc---CEEEEEe
Confidence 2333333558999999976666665 5554443
No 280
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.91 E-value=5.3e-25 Score=210.96 Aligned_cols=170 Identities=22% Similarity=0.187 Sum_probs=123.0
Q ss_pred ceEEecceeeeeC-ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchh---hhhh---c
Q 025114 27 SVLESGNVHAPID-EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDT---LIEQ---S 95 (257)
Q Consensus 27 ~~l~~~~l~~~~~-~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~---~~~~---~ 95 (257)
.+|+++||++.|+ ++++|+|+||+|++ |++++|+||||||||||+|+|+|++ |.++++... ++.+ .
T Consensus 3 ~~i~~~nls~~~~~~~~il~~is~~i~~---Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~ 79 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKEILKDISLSFFP---GAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQL 79 (552)
T ss_pred EEEEEeeEEEecCCCCeeecCceEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCC
Confidence 4799999999998 78899999999999 9999999999999999999999987 334443211 1111 1
Q ss_pred CCCCCHHHHHHHhCc--------------------hH----------------------HHHHHHHHHHHhccc--Cccc
Q 025114 96 VDGTSVAEIFKLYGE--------------------GF----------------------FREKETEVLQKLSLM--RQLV 131 (257)
Q Consensus 96 ~~~~~v~e~~~~~g~--------------------~~----------------------~~~~~~~~l~~l~~~--~~~v 131 (257)
+..+|+.+.+...-. .. ...+..++++.+++. ++.+
T Consensus 80 ~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 159 (552)
T TIGR03719 80 DPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADV 159 (552)
T ss_pred CCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCch
Confidence 224577776543100 00 011223456666663 4788
Q ss_pred cccChhHhHHHHHHHHhh-CCcEEEEECCHHHHH--------HHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHH
Q 025114 132 VSTGGGAVTRPINWRYMQ-KGISVWLDVPLEALA--------QRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERG 202 (257)
Q Consensus 132 ~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L~--------~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~ 202 (257)
..|||||+||+.+++++. +|++++||||+++|+ +.+...+.++++++|+++.+..+| |++..+.+|++
T Consensus 160 ~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~---d~v~~l~~g~i 236 (552)
T TIGR03719 160 TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVA---GWILELDRGRG 236 (552)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhc---CeEEEEECCEE
Confidence 999999999999998886 799999999999982 333444568899999977666666 66666666653
No 281
>PLN03211 ABC transporter G-25; Provisional
Probab=99.91 E-value=6.2e-25 Score=213.69 Aligned_cols=176 Identities=19% Similarity=0.201 Sum_probs=131.9
Q ss_pred EecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh------CCceecchhhhh----------
Q 025114 30 ESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL------GYSFFDCDTLIE---------- 93 (257)
Q Consensus 30 ~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l------g~~~~d~~~~~~---------- 93 (257)
..+|+++.|+++.+|+|+|+++++ |++++|+||||||||||+++|+|.+ |.+.+++.++..
T Consensus 70 ~~~~l~~~~~~~~iL~~vs~~i~~---Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~ 146 (659)
T PLN03211 70 KISDETRQIQERTILNGVTGMASP---GEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVT 146 (659)
T ss_pred ccccccccCCCCeeeeCCEEEEEC---CEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEEC
Confidence 355678889889999999999999 9999999999999999999999986 334555543211
Q ss_pred ---hcCCCCCHHHHHHHhC-----c----hHHHHHHHHHHHHhcccC--------ccccccChhHhHHHHHHHHhh-CCc
Q 025114 94 ---QSVDGTSVAEIFKLYG-----E----GFFREKETEVLQKLSLMR--------QLVVSTGGGAVTRPINWRYMQ-KGI 152 (257)
Q Consensus 94 ---~~~~~~~v~e~~~~~g-----~----~~~~~~~~~~l~~l~~~~--------~~v~~lsgG~~qr~~~a~~l~-~~~ 152 (257)
..+...|+.|.+.... . ....++..++++.+++.+ +.+..|||||+||+.+++.+. +|.
T Consensus 147 Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~ 226 (659)
T PLN03211 147 QDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 226 (659)
T ss_pred cccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCC
Confidence 1123568888765421 0 111233567888888853 346789999999999997776 799
Q ss_pred EEEEECCHHHH-----------HHHHHhcCCCCccccCCCC-CCchhhHHHHHHHHHHHHHHHHHhcccce
Q 025114 153 SVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCE-SGDAYTEALNRLSTLWEERGEAYANANAR 211 (257)
Q Consensus 153 vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~-~~~~~~~~~~~v~~l~~~r~~~y~~~~~~ 211 (257)
+++||||+++| ++++++.|.+++.++|+++ .+..++ |++..|.+|+....|+++++
T Consensus 227 iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~---D~iilL~~G~iv~~G~~~~~ 294 (659)
T PLN03211 227 LLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF---DSVLVLSEGRCLFFGKGSDA 294 (659)
T ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh---ceEEEecCCcEEEECCHHHH
Confidence 99999999998 4556556889999999976 345555 88888888877766665544
No 282
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.91 E-value=5.1e-25 Score=179.90 Aligned_cols=130 Identities=24% Similarity=0.249 Sum_probs=96.7
Q ss_pred EEecceeeeeC-ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhh---hhhc--CCC
Q 025114 29 LESGNVHAPID-EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTL---IEQS--VDG 98 (257)
Q Consensus 29 l~~~~l~~~~~-~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~---~~~~--~~~ 98 (257)
|+++|+++.|+ ++.+|+++||+|.+ |++++|+|+||||||||+++|+|++ |..++++... +.+. +..
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~ 77 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKP---GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPL 77 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECC---CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCcccc
Confidence 46899999995 46799999999999 9999999999999999999999987 4444443211 0110 112
Q ss_pred CCHHHHHHHhCchHHHHHHHHHHHHhcccCccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHHH--------HHHHh
Q 025114 99 TSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEALA--------QRIAA 169 (257)
Q Consensus 99 ~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L~--------~rl~~ 169 (257)
.++.+.+... .+..||||++||+.+++++. +|++++||||+++|+ +.+.+
T Consensus 78 ~tv~~nl~~~---------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~ 136 (166)
T cd03223 78 GTLREQLIYP---------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKE 136 (166)
T ss_pred ccHHHHhhcc---------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHH
Confidence 2333332210 46789999999999998876 799999999999982 33333
Q ss_pred cCCCCccccCCCC
Q 025114 170 VGTDSRPLLHQCE 182 (257)
Q Consensus 170 ~g~~~~~~~h~~~ 182 (257)
.+.++++++|+.+
T Consensus 137 ~~~tiiivsh~~~ 149 (166)
T cd03223 137 LGITVISVGHRPS 149 (166)
T ss_pred hCCEEEEEeCChh
Confidence 3678889999854
No 283
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=2.8e-25 Score=182.16 Aligned_cols=135 Identities=26% Similarity=0.296 Sum_probs=94.2
Q ss_pred EEecceeeeeCcc--ccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhhhcCCCCCHH
Q 025114 29 LESGNVHAPIDEA--QVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIEQSVDGTSVA 102 (257)
Q Consensus 29 l~~~~l~~~~~~~--~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~~~~~~~~v~ 102 (257)
|+++|+++.|+++ .+++++||++++ |++++|+||||||||||+|+|+|++ |..++++..+.. .+..
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~---G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~-----~~~~ 72 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKP---GEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRD-----LDLE 72 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcC---CCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhh-----cCHH
Confidence 4789999999876 799999999999 9999999999999999999999997 334554433211 0111
Q ss_pred HHHHHhC----c-hHHHHHHHHHHHHhcccCccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHHH-----------H
Q 025114 103 EIFKLYG----E-GFFREKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEALA-----------Q 165 (257)
Q Consensus 103 e~~~~~g----~-~~~~~~~~~~l~~l~~~~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L~-----------~ 165 (257)
..-...+ . ..+.. .+.+.+ ||||++||+.+++++. +|++++||||+++|+ .
T Consensus 73 ~~~~~i~~~~~~~~~~~~---t~~e~l---------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~ 140 (171)
T cd03228 73 SLRKNIAYVPQDPFLFSG---TIRENI---------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALR 140 (171)
T ss_pred HHHhhEEEEcCCchhccc---hHHHHh---------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHH
Confidence 1000000 0 00100 111111 9999999999998876 799999999999882 3
Q ss_pred HHHhcCCCCccccCCCCCC
Q 025114 166 RIAAVGTDSRPLLHQCESG 184 (257)
Q Consensus 166 rl~~~g~~~~~~~h~~~~~ 184 (257)
++. .+.++++++|+++..
T Consensus 141 ~~~-~~~tii~~sh~~~~~ 158 (171)
T cd03228 141 ALA-KGKTVIVIAHRLSTI 158 (171)
T ss_pred Hhc-CCCEEEEEecCHHHH
Confidence 332 356788889985443
No 284
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.91 E-value=1.9e-25 Score=187.61 Aligned_cols=155 Identities=23% Similarity=0.276 Sum_probs=105.4
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh------CCceecchhhhhhcCCCCCHH
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL------GYSFFDCDTLIEQSVDGTSVA 102 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l------g~~~~d~~~~~~~~~~~~~v~ 102 (257)
|+++|+++.|+++.+|+++||++.+ |++++|+|+||||||||+++|+|.+ |...+++.++.. .+..
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~---Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~-----~~~~ 72 (200)
T cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKK---GEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITD-----LPPE 72 (200)
T ss_pred CeEEEEEEEeCCEEeeeccceEECC---CcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCc-----CCHH
Confidence 4789999999988899999999999 9999999999999999999999983 445555543311 0100
Q ss_pred HHHHH-hC----c-hHHH-HHHHHHHHHhcccCccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-----------
Q 025114 103 EIFKL-YG----E-GFFR-EKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL----------- 163 (257)
Q Consensus 103 e~~~~-~g----~-~~~~-~~~~~~l~~l~~~~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L----------- 163 (257)
..... .+ . ..+. ....+.+ ......||||++||+.+++++. +|++++||||+++|
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~l------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~ 146 (200)
T cd03217 73 ERARLGIFLAFQYPPEIPGVKNADFL------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEV 146 (200)
T ss_pred HHhhCcEEEeecChhhccCccHHHHH------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 00000 00 0 0000 0111122 1233589999999999998876 79999999999888
Q ss_pred HHHHHhcCCCCccccCCCCCCch-hhHHHHHHHHHHHH
Q 025114 164 AQRIAAVGTDSRPLLHQCESGDA-YTEALNRLSTLWEE 200 (257)
Q Consensus 164 ~~rl~~~g~~~~~~~h~~~~~~~-~~~~~~~v~~l~~~ 200 (257)
+.++.+.+.+++.++|+++.+.. +| |++..+.+|
T Consensus 147 L~~~~~~~~tiii~sh~~~~~~~~~~---d~i~~l~~G 181 (200)
T cd03217 147 INKLREEGKSVLIITHYQRLLDYIKP---DRVHVLYDG 181 (200)
T ss_pred HHHHHHCCCEEEEEecCHHHHHHhhC---CEEEEEECC
Confidence 34554457789999999654433 33 454444433
No 285
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.91 E-value=1e-24 Score=205.87 Aligned_cols=173 Identities=23% Similarity=0.191 Sum_probs=119.3
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC----Cceecchh---hhhhcC--
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG----YSFFDCDT---LIEQSV-- 96 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg----~~~~d~~~---~~~~~~-- 96 (257)
|.+|.++|+++.|+++.+|+++||+|.+ |++++|||+||||||||+|+|+|.+. .+..+... +..+..
T Consensus 1 m~~i~~~~ls~~~g~~~l~~~~~l~~~~---G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~ 77 (530)
T COG0488 1 MSMITLENLSLAYGDRPLLENVSLTLNP---GERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPL 77 (530)
T ss_pred CceEEEeeeEEeeCCceeecCCcceeCC---CCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCc
Confidence 5689999999999999999999999999 99999999999999999999999882 22221110 001100
Q ss_pred -CCCCHHHHHHHhC------------------------------------chHHHHHHHHHHHHhcccC--ccccccChh
Q 025114 97 -DGTSVAEIFKLYG------------------------------------EGFFREKETEVLQKLSLMR--QLVVSTGGG 137 (257)
Q Consensus 97 -~~~~v~e~~~~~g------------------------------------~~~~~~~~~~~l~~l~~~~--~~v~~lsgG 137 (257)
...++.+.+.... ....+.+...++..+++.. +++.+||||
T Consensus 78 ~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG 157 (530)
T COG0488 78 DPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGG 157 (530)
T ss_pred CCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHH
Confidence 1123332211100 0011234456777777764 799999999
Q ss_pred HhHHHHHHHHhh-CCcEEEEECCHHHHH--------HHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHH
Q 025114 138 AVTRPINWRYMQ-KGISVWLDVPLEALA--------QRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAY 205 (257)
Q Consensus 138 ~~qr~~~a~~l~-~~~vl~LDep~~~L~--------~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y 205 (257)
++.|+.+|++|. +|++++|||||+.|+ .-|... | ++++++||=......| .++..+..+.+..|
T Consensus 158 ~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSHDR~FLd~V~---t~I~~ld~g~l~~y 231 (530)
T COG0488 158 WRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSHDRYFLDNVA---THILELDRGKLTPY 231 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHh---hheEEecCCceeEe
Confidence 999999998876 799999999999982 334333 5 8999999943344444 44544444444433
No 286
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.90 E-value=1.8e-25 Score=219.13 Aligned_cols=174 Identities=22% Similarity=0.235 Sum_probs=126.9
Q ss_pred eEEecceeeeeC--ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh--------
Q 025114 28 VLESGNVHAPID--EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE-------- 93 (257)
Q Consensus 28 ~l~~~~l~~~~~--~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~-------- 93 (257)
.++++||+++|+ ++++|+|+||+|++ |+.++|+|+||||||||+|+|+|++ |.+.+|+.++.+
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~---Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 527 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEP---GEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRR 527 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHh
Confidence 589999999995 46799999999999 9999999999999999999999998 566777754321
Q ss_pred ------h--cCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC--------------ccccccChhHhHHHHHHHHhh-C
Q 025114 94 ------Q--SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR--------------QLVVSTGGGAVTRPINWRYMQ-K 150 (257)
Q Consensus 94 ------~--~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~--------------~~v~~lsgG~~qr~~~a~~l~-~ 150 (257)
+ ....-|+.|++..... ...+...++++..++.+ ..-..|||||+||.++||++. +
T Consensus 528 ~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~ 606 (686)
T TIGR03797 528 QLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRK 606 (686)
T ss_pred ccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 0 1135588888876433 22333445555554431 223579999999999998875 7
Q ss_pred CcEEEEECCHHHH--------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccc
Q 025114 151 GISVWLDVPLEAL--------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN 209 (257)
Q Consensus 151 ~~vl~LDep~~~L--------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~ 209 (257)
|++++|||||++| .+.+...+.|++.++|+++.... + |++..|.+|++...|+.+
T Consensus 607 p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~-~---D~Iivl~~G~iv~~G~~~ 669 (686)
T TIGR03797 607 PRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRN-A---DRIYVLDAGRVVQQGTYD 669 (686)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHc-C---CEEEEEECCEEEEECCHH
Confidence 9999999999998 34444446789999999654322 3 676666666554444433
No 287
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.90 E-value=1.8e-25 Score=184.44 Aligned_cols=135 Identities=28% Similarity=0.287 Sum_probs=95.2
Q ss_pred EEecceeeeeCcc--ccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhhhcCCCCCHH
Q 025114 29 LESGNVHAPIDEA--QVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIEQSVDGTSVA 102 (257)
Q Consensus 29 l~~~~l~~~~~~~--~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~~~~~~~~v~ 102 (257)
|+++|+++.|+++ .+++++||++++ |++++|+||||||||||+|+|+|++ |...+++..+... ..
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~---Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~------~~ 71 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQ---GEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL------EK 71 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcC---CCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH------HH
Confidence 4789999999765 799999999999 9999999999999999999999987 3344544322110 00
Q ss_pred HHHHHhC---c--hHHHHHHHHHHHHhcccCccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-----------HH
Q 025114 103 EIFKLYG---E--GFFREKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL-----------AQ 165 (257)
Q Consensus 103 e~~~~~g---~--~~~~~~~~~~l~~l~~~~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~~ 165 (257)
.+-...+ . ..+.. .+.+ ..+..||||++|++.+++++. +|++++||||+++| ++
T Consensus 72 ~~~~~i~~~~q~~~~~~~---tv~~------~i~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~ 142 (178)
T cd03247 72 ALSSLISVLNQRPYLFDT---TLRN------NLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIF 142 (178)
T ss_pred HHHhhEEEEccCCeeecc---cHHH------hhcccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 0000000 0 00000 0111 117789999999999998876 79999999999988 23
Q ss_pred HHHhcCCCCccccCCCC
Q 025114 166 RIAAVGTDSRPLLHQCE 182 (257)
Q Consensus 166 rl~~~g~~~~~~~h~~~ 182 (257)
++. .+.+++.++|+.+
T Consensus 143 ~~~-~~~tii~~sh~~~ 158 (178)
T cd03247 143 EVL-KDKTLIWITHHLT 158 (178)
T ss_pred HHc-CCCEEEEEecCHH
Confidence 332 3678888999854
No 288
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=2.9e-25 Score=186.87 Aligned_cols=154 Identities=20% Similarity=0.199 Sum_probs=104.8
Q ss_pred ceEEecceeeeeC----ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC-------Cceecchhhhhh-
Q 025114 27 SVLESGNVHAPID----EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG-------YSFFDCDTLIEQ- 94 (257)
Q Consensus 27 ~~l~~~~l~~~~~----~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg-------~~~~d~~~~~~~- 94 (257)
+.+.++||+|.|+ ++.+|+++||+|++ |++++|+||||||||||+++|+|++. .+++++.++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~il~~~s~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~ 78 (202)
T cd03233 2 STLSWRNISFTTGKGRSKIPILKDFSGVVKP---GEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA 78 (202)
T ss_pred ceEEEEccEEEeccCCCCceeeeeEEEEECC---CcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch
Confidence 4678999999995 56799999999999 99999999999999999999999864 234444332110
Q ss_pred ---------------cCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccCccccccChhHhHHHHHHHHhh-CCcEEEEEC
Q 025114 95 ---------------SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDV 158 (257)
Q Consensus 95 ---------------~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDe 158 (257)
.+...++.+++.... .+. .++.+..||||++||+.+++++. +|.+++|||
T Consensus 79 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~-------------~~~-~~~~~~~LS~Ge~qrl~laral~~~p~llllDE 144 (202)
T cd03233 79 EKYPGEIIYVSEEDVHFPTLTVRETLDFAL-------------RCK-GNEFVRGISGGERKRVSIAEALVSRASVLCWDN 144 (202)
T ss_pred hhhcceEEEEecccccCCCCcHHHHHhhhh-------------hhc-cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcC
Confidence 011223333332110 011 35788899999999999998876 799999999
Q ss_pred CHHHH-----------HHHHHhc-CCCCccccCC-CCCCchhhHHHHHHHHHHHH
Q 025114 159 PLEAL-----------AQRIAAV-GTDSRPLLHQ-CESGDAYTEALNRLSTLWEE 200 (257)
Q Consensus 159 p~~~L-----------~~rl~~~-g~~~~~~~h~-~~~~~~~~~~~~~v~~l~~~ 200 (257)
|+++| ++++.+. +.+++.++|+ .+.+..+| |++..|.+|
T Consensus 145 Pt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~---d~i~~l~~G 196 (202)
T cd03233 145 STRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLF---DKVLVLYEG 196 (202)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhC---CeEEEEECC
Confidence 99998 3444333 4455555544 33344444 444444333
No 289
>PRK13409 putative ATPase RIL; Provisional
Probab=99.90 E-value=2.4e-24 Score=207.22 Aligned_cols=165 Identities=24% Similarity=0.265 Sum_probs=124.2
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC----Cceecchh-hhhh---cCC
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG----YSFFDCDT-LIEQ---SVD 97 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg----~~~~d~~~-~~~~---~~~ 97 (257)
.++|+++|+++.|++. .|+++||+|.+ |++++|+||||||||||+|+|+|++. .+.++..- +..+ ...
T Consensus 338 ~~~l~~~~ls~~~~~~-~l~~~s~~i~~---Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~ 413 (590)
T PRK13409 338 ETLVEYPDLTKKLGDF-SLEVEGGEIYE---GEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDY 413 (590)
T ss_pred ceEEEEcceEEEECCE-EEEecceEECC---CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCC
Confidence 4689999999999875 49999999999 99999999999999999999999873 23322100 0111 123
Q ss_pred CCCHHHHHHHhCchH-HHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH---------
Q 025114 98 GTSVAEIFKLYGEGF-FREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL--------- 163 (257)
Q Consensus 98 ~~~v~e~~~~~g~~~-~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L--------- 163 (257)
..|+.+++....... ......++++.+++.+ +.+.+|||||+||+.+|+++. +|++++||||+++|
T Consensus 414 ~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~ 493 (590)
T PRK13409 414 DGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVA 493 (590)
T ss_pred CCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence 568888775421111 1123457788888753 889999999999999998886 79999999999998
Q ss_pred --HHHHHh-cCCCCccccCCCCCCchhhHHHHHHHHH
Q 025114 164 --AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTL 197 (257)
Q Consensus 164 --~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l 197 (257)
+++++. .|.++++++||++.+..+| |++..+
T Consensus 494 ~~l~~l~~~~g~tviivsHD~~~~~~~a---Drvivl 527 (590)
T PRK13409 494 KAIRRIAEEREATALVVDHDIYMIDYIS---DRLMVF 527 (590)
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHhC---CEEEEE
Confidence 455544 3789999999977666666 666444
No 290
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.90 E-value=3.7e-25 Score=232.60 Aligned_cols=176 Identities=18% Similarity=0.177 Sum_probs=136.9
Q ss_pred cceEEecceeeeeC--ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh------h
Q 025114 26 ASVLESGNVHAPID--EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI------E 93 (257)
Q Consensus 26 ~~~l~~~~l~~~~~--~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~------~ 93 (257)
...|+++||+|.|+ ++.+|+|+||++.+ |++++|+||||||||||+|+|+|++ |.+++++.++. .
T Consensus 926 ~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~---Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r 1002 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYE---NQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVR 1002 (2272)
T ss_pred CceEEEEeEEEEecCCCceEEEeeEEEEcC---CcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHh
Confidence 35799999999995 57899999999999 9999999999999999999999997 44556554321 0
Q ss_pred h----------cCCCCCHHHHHHHh----Cc--hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcE
Q 025114 94 Q----------SVDGTSVAEIFKLY----GE--GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGIS 153 (257)
Q Consensus 94 ~----------~~~~~~v~e~~~~~----g~--~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~v 153 (257)
+ .+..+|+.+.+... +. ...+++..++++.+++.+ +.+..|||||+||+.+|+++. +|++
T Consensus 1003 ~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkV 1082 (2272)
T TIGR01257 1003 QSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKV 1082 (2272)
T ss_pred hcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 0 12356888876543 21 112344567889888864 789999999999999998876 7999
Q ss_pred EEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcc
Q 025114 154 VWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANA 208 (257)
Q Consensus 154 l~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~ 208 (257)
++||||+++| +++++ .|.+++.++|+++.+..+| |++..|.+|++...|++
T Consensus 1083 LLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmdea~~la---DrI~iL~~GkL~~~Gs~ 1144 (2272)
T TIGR01257 1083 VVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMDEADLLG---DRIAIISQGRLYCSGTP 1144 (2272)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhC---CEEEEEECCEEEEecCH
Confidence 9999999998 34443 4788999999998888777 88877777766554443
No 291
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.90 E-value=3.6e-24 Score=205.24 Aligned_cols=160 Identities=18% Similarity=0.201 Sum_probs=119.4
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchh---hhhh----
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDT---LIEQ---- 94 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~---~~~~---- 94 (257)
.++|+++|+++.|+++.+|+++||+|.+ |++++|+||||||||||+++|+|++ |.++++.+. ++.+
T Consensus 320 ~~~l~~~~l~~~~~~~~~l~~isl~i~~---Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~ 396 (552)
T TIGR03719 320 DKVIEAENLSKGFGDKLLIDDLSFKLPP---GGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDA 396 (552)
T ss_pred CeEEEEeeEEEEECCeeeeccceEEEcC---CCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccc
Confidence 4689999999999988999999999999 9999999999999999999999987 334443210 1111
Q ss_pred cCCCCCHHHHHHHhCc----hHHHHHHHHHHHHhccc----CccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH--
Q 025114 95 SVDGTSVAEIFKLYGE----GFFREKETEVLQKLSLM----RQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL-- 163 (257)
Q Consensus 95 ~~~~~~v~e~~~~~g~----~~~~~~~~~~l~~l~~~----~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L-- 163 (257)
.....++.+.+..... ........++++.+++. ++.+..|||||+||+.+++++. +|.+++||||+++|
T Consensus 397 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~ 476 (552)
T TIGR03719 397 LDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDV 476 (552)
T ss_pred cCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Confidence 1235688887754311 01112234678888874 3689999999999999998876 79999999999998
Q ss_pred ------HHHHHhcCCCCccccCCCCCCchhh
Q 025114 164 ------AQRIAAVGTDSRPLLHQCESGDAYT 188 (257)
Q Consensus 164 ------~~rl~~~g~~~~~~~h~~~~~~~~~ 188 (257)
.+-+...+.++++++||++.+..+|
T Consensus 477 ~~~~~l~~~l~~~~~~viivsHd~~~~~~~~ 507 (552)
T TIGR03719 477 ETLRALEEALLEFAGCAVVISHDRWFLDRIA 507 (552)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCHHHHHHhC
Confidence 2333333347899999966555555
No 292
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.90 E-value=1.1e-24 Score=175.45 Aligned_cols=188 Identities=20% Similarity=0.157 Sum_probs=146.8
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---CCceecchhhhhh---------
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---GYSFFDCDTLIEQ--------- 94 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---g~~~~d~~~~~~~--------- 94 (257)
.++.++||...- -|-.+|.++.. |+++.+|||||||||||+-.+||++ |.+.+++.++...
T Consensus 2 ~l~qln~v~~~t----RL~plS~qv~a---Ge~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhR 74 (248)
T COG4138 2 ILMQLNDVAEST----RLGPLSGEVRA---GEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHR 74 (248)
T ss_pred ceeeeccccccc----ccccccccccc---ceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHH
Confidence 467888887643 37789999999 9999999999999999999999998 5666666654211
Q ss_pred --------cCCCCCHHHHHHHhCchH-HHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHh-h-----C--CcEE
Q 025114 95 --------SVDGTSVAEIFKLYGEGF-FREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYM-Q-----K--GISV 154 (257)
Q Consensus 95 --------~~~~~~v~e~~~~~g~~~-~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l-~-----~--~~vl 154 (257)
..+.+++..++..+-... ......++...+++.+ +.+.+||||+.||+-+|... . + +.++
T Consensus 75 AYLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LL 154 (248)
T COG4138 75 AYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLL 154 (248)
T ss_pred HHHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeE
Confidence 112344555544433322 1233456777788766 88999999999999988543 1 2 4699
Q ss_pred EEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecchhhhhhccc
Q 025114 155 WLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGH 223 (257)
Q Consensus 155 ~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~~l~~~~~~ 223 (257)
++|||.+.| +.++.+.|.++++..||+|.-.+.+ +++..+..|.+...|..+++++++.+.++||.
T Consensus 155 llDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA---~~~wLL~rG~l~~~G~~~eVlt~~vL~q~fg~ 231 (248)
T COG4138 155 LLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHA---HRAWLLKRGKLLASGRREEVLTPPVLAQAYGM 231 (248)
T ss_pred EecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHH---HHHHHHhcCeEEeecchhhhcChHHHHHHhcc
Confidence 999999887 5677778999999999999888877 99999999999999999999999999999995
Q ss_pred c
Q 025114 224 K 224 (257)
Q Consensus 224 ~ 224 (257)
.
T Consensus 232 ~ 232 (248)
T COG4138 232 N 232 (248)
T ss_pred c
Confidence 3
No 293
>PRK13948 shikimate kinase; Provisional
Probab=99.90 E-value=1.6e-22 Score=167.37 Aligned_cols=168 Identities=33% Similarity=0.505 Sum_probs=145.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccCccccccCh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGG 136 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~~lsg 136 (257)
+..++|+|++||||||+++.|+..+|+.|+|.|.++++.+ |+++.++|+..|+..||+.+.++++.+......+.++||
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~-g~si~~if~~~Ge~~fR~~E~~~l~~l~~~~~~VIa~Gg 88 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVT-GKSIPEIFRHLGEAYFRRCEAEVVRRLTRLDYAVISLGG 88 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHH-hCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCeEEECCC
Confidence 6889999999999999999999999999999999999888 999999999999999999999999887655678999999
Q ss_pred hHhHHHHHHHHhh-CCcEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecch
Q 025114 137 GAVTRPINWRYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLE 215 (257)
Q Consensus 137 G~~qr~~~a~~l~-~~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~ 215 (257)
|...+..+...+. .+.++||+.|.+.+.+|+.. ..||++.+.+. .+++..+++.|.+.|..++.++
T Consensus 89 G~v~~~~n~~~l~~~g~vV~L~~~~e~l~~Rl~~---~~RPll~~~~~-------~~~l~~l~~~R~~~Y~~a~~~i--- 155 (182)
T PRK13948 89 GTFMHEENRRKLLSRGPVVVLWASPETIYERTRP---GDRPLLQVEDP-------LGRIRTLLNEREPVYRQATIHV--- 155 (182)
T ss_pred cEEcCHHHHHHHHcCCeEEEEECCHHHHHHHhcC---CCCCCCCCCCh-------HHHHHHHHHHHHHHHHhCCEEE---
Confidence 9998888887776 58899999999999999953 35887754211 2678899999999997766665
Q ss_pred hhhhhccccCCCCCCHHHHHHHHHHHHHhhhc
Q 025114 216 NIAVKLGHKDVSSLTPVTIAIEALEQIEGFLK 247 (257)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 247 (257)
++++.++++++++|++.+...++
T Consensus 156 ---------~t~~~~~~ei~~~i~~~l~~~~~ 178 (182)
T PRK13948 156 ---------STDGRRSEEVVEEIVEKLWAWAE 178 (182)
T ss_pred ---------ECCCCCHHHHHHHHHHHHHHHhh
Confidence 57789999999999999988654
No 294
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.90 E-value=3.3e-24 Score=205.61 Aligned_cols=166 Identities=17% Similarity=0.192 Sum_probs=122.3
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchh---hhh----h
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDT---LIE----Q 94 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~---~~~----~ 94 (257)
.++|+++||++.|+++.+|+|+||+|.+ |++++|+||||||||||+|+|+|++ |.++++.+. ++. .
T Consensus 322 ~~~l~~~~l~~~~~~~~~l~~isl~i~~---Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~ 398 (556)
T PRK11819 322 DKVIEAENLSKSFGDRLLIDDLSFSLPP---GGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDA 398 (556)
T ss_pred CeEEEEEeEEEEECCeeeecceeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhh
Confidence 4589999999999988999999999999 9999999999999999999999987 334443210 111 1
Q ss_pred cCCCCCHHHHHHHhCc----hHHHHHHHHHHHHhccc----CccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHHH-
Q 025114 95 SVDGTSVAEIFKLYGE----GFFREKETEVLQKLSLM----RQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEALA- 164 (257)
Q Consensus 95 ~~~~~~v~e~~~~~g~----~~~~~~~~~~l~~l~~~----~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L~- 164 (257)
.....++.+.+..... .........+++.+++. ++.+..||||++||+.+++++. +|.+++||||+++|+
T Consensus 399 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~ 478 (556)
T PRK11819 399 LDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDV 478 (556)
T ss_pred cCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 1235688887654211 00112234678888874 3689999999999999998876 799999999999982
Q ss_pred -------HHHHhcCCCCccccCCCCCCchhhHHHHHHHHH
Q 025114 165 -------QRIAAVGTDSRPLLHQCESGDAYTEALNRLSTL 197 (257)
Q Consensus 165 -------~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l 197 (257)
+-+.....+++.++||++.+..+| |++..+
T Consensus 479 ~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~---d~i~~l 515 (556)
T PRK11819 479 ETLRALEEALLEFPGCAVVISHDRWFLDRIA---THILAF 515 (556)
T ss_pred HHHHHHHHHHHhCCCeEEEEECCHHHHHHhC---CEEEEE
Confidence 333333347889999976655555 555333
No 295
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=8.1e-25 Score=201.52 Aligned_cols=179 Identities=21% Similarity=0.185 Sum_probs=131.4
Q ss_pred eEEecceeeeeCccc--cccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhh--------hh
Q 025114 28 VLESGNVHAPIDEAQ--VLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTL--------IE 93 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~--~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~--------~~ 93 (257)
.++++||+|+|.+.. +|+|+||++++ ||.++|+|++||||||++++|+|.+ |.+.+.+.++ .+
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~---GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e 412 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQ---GEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRE 412 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecC---CCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHH
Confidence 799999999997754 99999999999 9999999999999999999999866 3333333221 11
Q ss_pred hc--------CCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC--------------ccccccChhHhHHHHHHHHhh-C
Q 025114 94 QS--------VDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR--------------QLVVSTGGGAVTRPINWRYMQ-K 150 (257)
Q Consensus 94 ~~--------~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~--------------~~v~~lsgG~~qr~~~a~~l~-~ 150 (257)
.. .+.-|+.+++.........+...++++++++.+ ..-..|||||+||.++||++. +
T Consensus 413 ~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~d 492 (573)
T COG4987 413 TISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHD 492 (573)
T ss_pred HHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcC
Confidence 10 112345555554443333344556777777643 234578999999999998765 7
Q ss_pred CcEEEEECCHHHH--------HHHHHh--cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceec
Q 025114 151 GISVWLDVPLEAL--------AQRIAA--VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVS 213 (257)
Q Consensus 151 ~~vl~LDep~~~L--------~~rl~~--~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~ 213 (257)
..+++|||||++| ++++.. +|.++++++|++-.... | |+|..+.+|+...+|++++.+.
T Consensus 493 apl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~-~---drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 493 APLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER-M---DRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred CCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhh-c---CEEEEEECCeeeecCCHHhhhc
Confidence 8899999999998 344432 47899999999654433 3 8988899999888888776653
No 296
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.90 E-value=5.4e-25 Score=219.05 Aligned_cols=180 Identities=21% Similarity=0.232 Sum_probs=135.8
Q ss_pred ceEEecceeeeeCcc---ccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhhh-----
Q 025114 27 SVLESGNVHAPIDEA---QVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIEQ----- 94 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~---~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~~----- 94 (257)
..++++||+|+|..+ .+|+++||+|++ |+.++|||||||||||++++|.+++ |.+++|+.++..-
T Consensus 349 g~ief~nV~FsYPsRpdv~Il~g~sl~i~~---G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~l 425 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSRPDVKILKGVSLKIPS---GQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWL 425 (1228)
T ss_pred cceEEEEEEecCCCCCcchhhCCeEEEeCC---CCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHH
Confidence 469999999999754 599999999999 9999999999999999999999998 5678888876321
Q ss_pred -----------cCCCCCHHHHHHHhCchHHHHHHHHHHHHhccc--------------CccccccChhHhHHHHHHHHhh
Q 025114 95 -----------SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLM--------------RQLVVSTGGGAVTRPINWRYMQ 149 (257)
Q Consensus 95 -----------~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~--------------~~~v~~lsgG~~qr~~~a~~l~ 149 (257)
..+..|+.|++....+...++...++++..+.. ...-.+|||||+||+++||++.
T Consensus 426 r~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv 505 (1228)
T KOG0055|consen 426 RSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALV 505 (1228)
T ss_pred HhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHH
Confidence 224678888887655443333333333322211 1344569999999999998876
Q ss_pred -CCcEEEEECCHHHHH---HH-----HH--hcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceec
Q 025114 150 -KGISVWLDVPLEALA---QR-----IA--AVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVS 213 (257)
Q Consensus 150 -~~~vl~LDep~~~L~---~r-----l~--~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~ 213 (257)
+|++|+|||||++|+ ++ |. ..|.|.+.+.|.+..+.. + |++..+.+|+++..|++++.+.
T Consensus 506 ~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-a---D~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 506 RNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-A---DKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred hCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-c---CEEEEEECCEEEEecCHHHHHh
Confidence 799999999999992 11 21 247899999999877655 3 7777888887777777766653
No 297
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.90 E-value=1.1e-23 Score=200.71 Aligned_cols=150 Identities=25% Similarity=0.293 Sum_probs=112.5
Q ss_pred eEEecceeeeeCc-cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh---------
Q 025114 28 VLESGNVHAPIDE-AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE--------- 93 (257)
Q Consensus 28 ~l~~~~l~~~~~~-~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~--------- 93 (257)
.++++||+++|++ +++|+|+||++++ |+.++|+||||||||||+++|+|++ |.+.+|+.++.+
T Consensus 334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~---G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i 410 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVLDGVSLDLPP---GERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRI 410 (529)
T ss_pred eEEEEEEEEecCCCCceeecceEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhhe
Confidence 5999999999975 5699999999999 9999999999999999999999998 556777743321
Q ss_pred ----h--cCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC--------------ccccccChhHhHHHHHHHHhh-CCc
Q 025114 94 ----Q--SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR--------------QLVVSTGGGAVTRPINWRYMQ-KGI 152 (257)
Q Consensus 94 ----~--~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~--------------~~v~~lsgG~~qr~~~a~~l~-~~~ 152 (257)
+ ..+.-|+.+++....+....++..++++..++.+ ..-..|||||+||.++||++. +|+
T Consensus 411 ~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~ 490 (529)
T TIGR02868 411 SVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAP 490 (529)
T ss_pred EEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCC
Confidence 1 1135588888876543333344445555554421 233569999999999998775 799
Q ss_pred EEEEECCHHHHH--------HHHHh--cCCCCccccCC
Q 025114 153 SVWLDVPLEALA--------QRIAA--VGTDSRPLLHQ 180 (257)
Q Consensus 153 vl~LDep~~~L~--------~rl~~--~g~~~~~~~h~ 180 (257)
+++|||||++|+ +.+.. .+.|++.++|+
T Consensus 491 iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHr 528 (529)
T TIGR02868 491 ILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHH 528 (529)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 999999999983 33332 25677888886
No 298
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=1.3e-23 Score=165.41 Aligned_cols=154 Identities=23% Similarity=0.255 Sum_probs=117.4
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh-------CCceecchhhhh-------
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL-------GYSFFDCDTLIE------- 93 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l-------g~~~~d~~~~~~------- 93 (257)
++.++||+.+.++...|-++||+|.+ ||++.|+||+|||||||+..+.|.+ |..+++..++.-
T Consensus 2 ~l~l~nvsl~l~g~cLLa~~n~Tia~---GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq 78 (213)
T COG4136 2 MLCLKNVSLRLPGSCLLANVNFTIAK---GEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQ 78 (213)
T ss_pred ceeeeeeeecCCCceEEEeeeEEecC---CcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhh
Confidence 57899999999999999999999999 9999999999999999999999988 334554443310
Q ss_pred --------hcCCCCCHHHHHHH------hCchHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEE
Q 025114 94 --------QSVDGTSVAEIFKL------YGEGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVW 155 (257)
Q Consensus 94 --------~~~~~~~v~e~~~~------~g~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~ 155 (257)
..++..++.+++.+ .|+ .-|.....+|++.++.. +.+..+||||+.|+++.+++. +|+.++
T Consensus 79 ~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~-aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lL 157 (213)
T COG4136 79 IGILFQDALLFPHLSVGQNLLFALPATLKGN-ARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALL 157 (213)
T ss_pred eeeeecccccccccccccceEEecCcccccH-HHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceee
Confidence 01233444443321 222 22344567889988864 889999999999999997765 899999
Q ss_pred EECCHHHHHHH------------HHhcCCCCccccCCCCCCc
Q 025114 156 LDVPLEALAQR------------IAAVGTDSRPLLHQCESGD 185 (257)
Q Consensus 156 LDep~~~L~~r------------l~~~g~~~~~~~h~~~~~~ 185 (257)
||||++.|+.. ++..|+.++.++||...+.
T Consensus 158 LDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp 199 (213)
T COG4136 158 LDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP 199 (213)
T ss_pred eCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 99999999533 3445888899999965543
No 299
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.90 E-value=4.7e-25 Score=176.06 Aligned_cols=120 Identities=24% Similarity=0.258 Sum_probs=92.8
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCC----ceecchhhhhhcCCCCCHHHH
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGY----SFFDCDTLIEQSVDGTSVAEI 104 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~----~~~d~~~~~~~~~~~~~v~e~ 104 (257)
|+++|+++.|++..+++++||++++ |++++|+|+||||||||+++|+|++.+ +++++.
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~~~~---Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~--------------- 62 (144)
T cd03221 1 IELENLSKTYGGKLLLKDISLTINP---GDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST--------------- 62 (144)
T ss_pred CEEEEEEEEECCceEEEeeEEEECC---CCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe---------------
Confidence 4789999999888899999999999 999999999999999999999998732 222221
Q ss_pred HHHhCchHHHHHHHHHHHHhcccCccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHHH--------HHHHhcCCCCc
Q 025114 105 FKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEALA--------QRIAAVGTDSR 175 (257)
Q Consensus 105 ~~~~g~~~~~~~~~~~l~~l~~~~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L~--------~rl~~~g~~~~ 175 (257)
..++ .+.+||+|++||+.+++++. +|.+++||||+++|+ +.+++.+.++.
T Consensus 63 -----------------~~i~----~~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til 121 (144)
T cd03221 63 -----------------VKIG----YFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVI 121 (144)
T ss_pred -----------------EEEE----EEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEE
Confidence 0111 11229999999999998876 799999999998882 33333356788
Q ss_pred cccCCCCCCchh
Q 025114 176 PLLHQCESGDAY 187 (257)
Q Consensus 176 ~~~h~~~~~~~~ 187 (257)
.++|+++.+..+
T Consensus 122 ~~th~~~~~~~~ 133 (144)
T cd03221 122 LVSHDRYFLDQV 133 (144)
T ss_pred EEECCHHHHHHh
Confidence 888985444333
No 300
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.90 E-value=2.8e-23 Score=196.18 Aligned_cols=152 Identities=25% Similarity=0.241 Sum_probs=119.4
Q ss_pred CCcceEEecceeeeeCc-cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCc-------------eecch
Q 025114 24 LSASVLESGNVHAPIDE-AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYS-------------FFDCD 89 (257)
Q Consensus 24 ~~~~~l~~~~l~~~~~~-~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~-------------~~d~~ 89 (257)
....+++++|+++.|++ +.+++++||.|.+ |+.|+||||||+|||||+|+|+|.+++. |++.+
T Consensus 317 ~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~---g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~ 393 (530)
T COG0488 317 LGKLVLEFENVSKGYDGGRLLLKDLSFRIDR---GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQH 393 (530)
T ss_pred CCCeeEEEeccccccCCCceeecCceEEecC---CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEeh
Confidence 45679999999999966 6899999999999 9999999999999999999998877432 33333
Q ss_pred hhhhhcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC----ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-
Q 025114 90 TLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR----QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL- 163 (257)
Q Consensus 90 ~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~----~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L- 163 (257)
.. ......++.+.+............+..|.++++.. +++..|||||+.|+.++.++. .|.+++|||||+.|
T Consensus 394 ~~--~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLD 471 (530)
T COG0488 394 RD--ELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471 (530)
T ss_pred hh--hcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCC
Confidence 21 11135577777766543322455567788888764 789999999999999998886 69999999999988
Q ss_pred -------HHHHHhcCCCCccccCC
Q 025114 164 -------AQRIAAVGTDSRPLLHQ 180 (257)
Q Consensus 164 -------~~rl~~~g~~~~~~~h~ 180 (257)
...|.....++++|+||
T Consensus 472 i~s~~aLe~aL~~f~Gtvl~VSHD 495 (530)
T COG0488 472 IESLEALEEALLDFEGTVLLVSHD 495 (530)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeCC
Confidence 24444455689999999
No 301
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.90 E-value=4.7e-25 Score=192.09 Aligned_cols=168 Identities=14% Similarity=0.083 Sum_probs=113.9
Q ss_pred cceEEecceeeeeCc--cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh------
Q 025114 26 ASVLESGNVHAPIDE--AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------ 93 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~--~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------ 93 (257)
...|+++|+++.|++ +.+|+++||+|++ |++++|+|+||||||||+|+|+|++ |.+++++.++..
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKP---GQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEEcC---CCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 467999999999986 5799999999999 9999999999999999999999987 555666543311
Q ss_pred -h---------cCCCCCHHHHHHHhCchHHHHHHHH---------HHHHh--ccc---CccccccChhHhHHHHHHHHhh
Q 025114 94 -Q---------SVDGTSVAEIFKLYGEGFFREKETE---------VLQKL--SLM---RQLVVSTGGGAVTRPINWRYMQ 149 (257)
Q Consensus 94 -~---------~~~~~~v~e~~~~~g~~~~~~~~~~---------~l~~l--~~~---~~~v~~lsgG~~qr~~~a~~l~ 149 (257)
. .+...++.+.+..... .......+ .++.+ ++. ...+..||||++||+.+++++.
T Consensus 94 ~~~i~~v~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 94 RSRLSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred hhhEEEECCCCcccccHHHHhcCcCCC-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 0 0112244444322110 00111112 22222 222 1456789999999999998876
Q ss_pred -CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHH
Q 025114 150 -KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERG 202 (257)
Q Consensus 150 -~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~ 202 (257)
+|++++||||+++| +.++. .+.+++.++|+++.... | +++..|.+|++
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~-~---dri~~l~~G~i 232 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVSTILD-A---DLVLVLSRGIL 232 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHHHHh-C---CEEEEEECCEE
Confidence 79999999999988 22222 36788899999654432 4 55555555543
No 302
>PLN03073 ABC transporter F family; Provisional
Probab=99.90 E-value=7.5e-25 Score=214.50 Aligned_cols=169 Identities=21% Similarity=0.214 Sum_probs=117.5
Q ss_pred cceEEecceeeeeC-ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchh---hhhhc-C
Q 025114 26 ASVLESGNVHAPID-EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDT---LIEQS-V 96 (257)
Q Consensus 26 ~~~l~~~~l~~~~~-~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~---~~~~~-~ 96 (257)
.++|+++||++.|+ ++.+|+++||+|.+ |++++|+||||||||||+|+|+|++ |.++++... ++.+. .
T Consensus 506 ~~~L~~~~ls~~y~~~~~il~~vsl~i~~---Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~ 582 (718)
T PLN03073 506 PPIISFSDASFGYPGGPLLFKNLNFGIDL---DSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHV 582 (718)
T ss_pred CceEEEEeeEEEeCCCCeeEeccEEEEcC---CCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEecccc
Confidence 46899999999996 45699999999999 9999999999999999999999987 333332211 01111 1
Q ss_pred CCCCHHH--HHH--HhCchHHHHHHHHHHHHhccc----CccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH----
Q 025114 97 DGTSVAE--IFK--LYGEGFFREKETEVLQKLSLM----RQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL---- 163 (257)
Q Consensus 97 ~~~~v~e--~~~--~~g~~~~~~~~~~~l~~l~~~----~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L---- 163 (257)
...++.+ ++. ........+...++++.+++. .+++..|||||+||+.+++++. +|.+++|||||++|
T Consensus 583 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s 662 (718)
T PLN03073 583 DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDA 662 (718)
T ss_pred ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence 1222221 111 100011134456788888875 2789999999999999998776 79999999999998
Q ss_pred ----HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHH
Q 025114 164 ----AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEE 200 (257)
Q Consensus 164 ----~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~ 200 (257)
.+.+...+.++++++||++.+..+| +++..+.+|
T Consensus 663 ~~~l~~~L~~~~gtvIivSHd~~~i~~~~---drv~~l~~G 700 (718)
T PLN03073 663 VEALIQGLVLFQGGVLMVSHDEHLISGSV---DELWVVSEG 700 (718)
T ss_pred HHHHHHHHHHcCCEEEEEECCHHHHHHhC---CEEEEEECC
Confidence 3444433348999999966555555 555444333
No 303
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.6e-24 Score=205.49 Aligned_cols=179 Identities=21% Similarity=0.209 Sum_probs=132.9
Q ss_pred ceEEecceeeeeCc---cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhhh-----
Q 025114 27 SVLESGNVHAPIDE---AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIEQ----- 94 (257)
Q Consensus 27 ~~l~~~~l~~~~~~---~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~~----- 94 (257)
-.++++||+|.|.. .++|+|+||+|++ |++++||||||+||||+..+|-.++ |.+.+|+.++.+-
T Consensus 464 G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~p---Ge~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~l 540 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRPDVPVLKNLSFTIRP---GEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYL 540 (716)
T ss_pred ceEEEEEeeeecCCCCCchhhcCceeeeCC---CCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHH
Confidence 36999999999975 4699999999999 9999999999999999999999998 6678888776321
Q ss_pred -----------cCCCCCHHHHHHHhCchHHHHHHHH---------HHHHhccc-----CccccccChhHhHHHHHHHHhh
Q 025114 95 -----------SVDGTSVAEIFKLYGEGFFREKETE---------VLQKLSLM-----RQLVVSTGGGAVTRPINWRYMQ 149 (257)
Q Consensus 95 -----------~~~~~~v~e~~~~~g~~~~~~~~~~---------~l~~l~~~-----~~~v~~lsgG~~qr~~~a~~l~ 149 (257)
..++.|+.|++.+.-...-.+.... .+..+-.. ..+-.+|||||+||.+|||+|.
T Consensus 541 r~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl 620 (716)
T KOG0058|consen 541 RRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL 620 (716)
T ss_pred HHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh
Confidence 1246788888876443222222222 22222111 1556789999999999998875
Q ss_pred -CCcEEEEECCHHHHH-----------HHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceec
Q 025114 150 -KGISVWLDVPLEALA-----------QRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVS 213 (257)
Q Consensus 150 -~~~vl~LDep~~~L~-----------~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~ 213 (257)
+|.+++|||.|+.|+ .++. .+.|++.+.|-+..+.. .|+|..+.+|++...|+.++.+.
T Consensus 621 r~P~VLILDEATSALDaeSE~lVq~aL~~~~-~~rTVlvIAHRLSTV~~----Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 621 RNPRVLILDEATSALDAESEYLVQEALDRLM-QGRTVLVIAHRLSTVRH----ADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred cCCCEEEEechhhhcchhhHHHHHHHHHHhh-cCCeEEEEehhhhHhhh----ccEEEEEcCCeEEecccHHHHhh
Confidence 799999999999992 2332 35788999998776543 27777788888877776666553
No 304
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.90 E-value=1.1e-24 Score=210.26 Aligned_cols=177 Identities=19% Similarity=0.141 Sum_probs=124.2
Q ss_pred eEEecceeeee-CccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---CCceecchhhhh----------
Q 025114 28 VLESGNVHAPI-DEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---GYSFFDCDTLIE---------- 93 (257)
Q Consensus 28 ~l~~~~l~~~~-~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---g~~~~d~~~~~~---------- 93 (257)
-++++||++.| +++++|+|+||++++ |+.++|+|+||||||||+++|+|++ |.+.+++.++.+
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~---G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i 425 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPA---GQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHL 425 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhhe
Confidence 49999999755 567899999999999 9999999999999999999999998 445666643311
Q ss_pred ----h--cCCCCCHHHHHHHhCchHHHHHHHHHHHHhccc-----------C---ccccccChhHhHHHHHHHHhh-CCc
Q 025114 94 ----Q--SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLM-----------R---QLVVSTGGGAVTRPINWRYMQ-KGI 152 (257)
Q Consensus 94 ----~--~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~-----------~---~~v~~lsgG~~qr~~~a~~l~-~~~ 152 (257)
+ ..+.-|+.+++.........+...++++..++. . ..-..|||||+||.++||++. +|+
T Consensus 426 ~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~ 505 (588)
T PRK11174 426 SWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQ 505 (588)
T ss_pred EEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 1 123568999887643322233333444433321 1 334579999999999998775 799
Q ss_pred EEEEECCHHHHH--------HHHHh--cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccce
Q 025114 153 SVWLDVPLEALA--------QRIAA--VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANAR 211 (257)
Q Consensus 153 vl~LDep~~~L~--------~rl~~--~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~ 211 (257)
+++|||||++|+ +.+.+ .+.|++.++|.++... .+ |++..+.+|++...|+.++.
T Consensus 506 IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~-~a---D~Iivl~~G~i~e~G~~~eL 570 (588)
T PRK11174 506 LLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLA-QW---DQIWVMQDGQIVQQGDYAEL 570 (588)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHH-hC---CEEEEEeCCeEeecCCHHHH
Confidence 999999999982 22322 3678999999965432 23 66666666665555544433
No 305
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.90 E-value=1e-24 Score=209.86 Aligned_cols=177 Identities=21% Similarity=0.219 Sum_probs=128.3
Q ss_pred ceEEecceeeeeCc--cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-------
Q 025114 27 SVLESGNVHAPIDE--AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------- 93 (257)
Q Consensus 27 ~~l~~~~l~~~~~~--~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------- 93 (257)
..|+++||++.|++ +.+|+|+||++++ |++++|+||||||||||+++|+|++ |.+++++.++.+
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~---G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r 413 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKA---GEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALR 413 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECC---CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHH
Confidence 45999999999964 5699999999999 9999999999999999999999988 556776654321
Q ss_pred -------h--cCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC-------------ccccccChhHhHHHHHHHHhh-C
Q 025114 94 -------Q--SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR-------------QLVVSTGGGAVTRPINWRYMQ-K 150 (257)
Q Consensus 94 -------~--~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~-------------~~v~~lsgG~~qr~~~a~~l~-~ 150 (257)
+ .....|+.+++.........+...++++.+++.+ .....|||||+||..+||++. +
T Consensus 414 ~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~ 493 (574)
T PRK11160 414 QAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHD 493 (574)
T ss_pred hheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 0 1124578887765433223344456666666542 245679999999999998775 7
Q ss_pred CcEEEEECCHHHHH--------HHHHh--cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccc
Q 025114 151 GISVWLDVPLEALA--------QRIAA--VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANA 210 (257)
Q Consensus 151 ~~vl~LDep~~~L~--------~rl~~--~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~ 210 (257)
|++++|||||++|+ +.+.. .+.+++.++|+++... .| |++..|.+|++...|+.++
T Consensus 494 ~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~-~~---d~i~~l~~G~i~~~g~~~~ 559 (574)
T PRK11160 494 APLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLE-QF---DRICVMDNGQIIEQGTHQE 559 (574)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHH-hC---CEEEEEeCCeEEEeCCHHH
Confidence 99999999999982 33322 3678899999965543 23 6766666666555454433
No 306
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.90 E-value=1e-24 Score=214.56 Aligned_cols=176 Identities=20% Similarity=0.186 Sum_probs=124.8
Q ss_pred ceEEecceeeeeCc---cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhhh-----
Q 025114 27 SVLESGNVHAPIDE---AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIEQ----- 94 (257)
Q Consensus 27 ~~l~~~~l~~~~~~---~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~~----- 94 (257)
..++++||++.|++ +++|+|+||+|++ |+.++|+||||||||||+++|+|++ |.+++|+.++.+-
T Consensus 477 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~---Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l 553 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRPDVPVLKGLTFTLHP---GEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYL 553 (711)
T ss_pred CeEEEEEEEEECCCCCCCccccCceEEEcC---CCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHH
Confidence 35999999999964 5699999999999 9999999999999999999999998 5577777554211
Q ss_pred -----------cCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC--------------ccccccChhHhHHHHHHHHhh
Q 025114 95 -----------SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR--------------QLVVSTGGGAVTRPINWRYMQ 149 (257)
Q Consensus 95 -----------~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~--------------~~v~~lsgG~~qr~~~a~~l~ 149 (257)
.....|+.+++.........+...++++..++.+ ..-..|||||+||.++||++.
T Consensus 554 r~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl 633 (711)
T TIGR00958 554 HRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALV 633 (711)
T ss_pred HhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHh
Confidence 1235688888865422222233344454444321 234579999999999998875
Q ss_pred -CCcEEEEECCHHHHHHH-------H-HhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccc
Q 025114 150 -KGISVWLDVPLEALAQR-------I-AAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN 209 (257)
Q Consensus 150 -~~~vl~LDep~~~L~~r-------l-~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~ 209 (257)
+|++++|||||++|+.. . ...+.+++.++|+++... .+ |++..|.+|++...|+.+
T Consensus 634 ~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~-~a---D~IivL~~G~ive~Gt~~ 698 (711)
T TIGR00958 634 RKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVE-RA---DQILVLKKGSVVEMGTHK 698 (711)
T ss_pred cCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHH-hC---CEEEEEECCEEEEeeCHH
Confidence 79999999999998421 1 123678899999865432 23 666556555544444433
No 307
>PLN03073 ABC transporter F family; Provisional
Probab=99.90 E-value=1.3e-24 Score=212.72 Aligned_cols=168 Identities=17% Similarity=0.148 Sum_probs=118.1
Q ss_pred CcceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh--CCc------eecchhhhhhcC
Q 025114 25 SASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL--GYS------FFDCDTLIEQSV 96 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l--g~~------~~d~~~~~~~~~ 96 (257)
.+.+|+++|+++.|+++.+|+|+||+|.+ |++++|||+||||||||+|+|+|.. |.+ +++++.. .
T Consensus 174 ~~~~I~i~nls~~y~~~~ll~~isl~i~~---Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~----g 246 (718)
T PLN03073 174 AIKDIHMENFSISVGGRDLIVDASVTLAF---GRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVV----G 246 (718)
T ss_pred CceeEEEceEEEEeCCCEEEECCEEEECC---CCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCC----C
Confidence 34579999999999988999999999999 9999999999999999999999854 221 2211100 0
Q ss_pred CCCCHHH-------------------HHH-----------------------------------Hh---CchHHHHHHHH
Q 025114 97 DGTSVAE-------------------IFK-----------------------------------LY---GEGFFREKETE 119 (257)
Q Consensus 97 ~~~~v~e-------------------~~~-----------------------------------~~---g~~~~~~~~~~ 119 (257)
...++.+ +++ .. +......+..+
T Consensus 247 ~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~ 326 (718)
T PLN03073 247 DDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAAS 326 (718)
T ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 0001100 000 00 00011223445
Q ss_pred HHHHhccc----CccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH--------HHHHHhcCCCCccccCCCCCCch
Q 025114 120 VLQKLSLM----RQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL--------AQRIAAVGTDSRPLLHQCESGDA 186 (257)
Q Consensus 120 ~l~~l~~~----~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L--------~~rl~~~g~~~~~~~h~~~~~~~ 186 (257)
+|..+++. ++++..||||++||+.+++++. +|++++|||||++| ...++..+.++++++||.+.+..
T Consensus 327 ~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~ 406 (718)
T PLN03073 327 ILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNT 406 (718)
T ss_pred HHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHH
Confidence 67777774 3688999999999999998876 79999999999998 24444457789999999766666
Q ss_pred hhHHHHHHHHHHHHHH
Q 025114 187 YTEALNRLSTLWEERG 202 (257)
Q Consensus 187 ~~~~~~~v~~l~~~r~ 202 (257)
+| +++..|.+|++
T Consensus 407 ~~---d~i~~l~~g~i 419 (718)
T PLN03073 407 VV---TDILHLHGQKL 419 (718)
T ss_pred hC---CEEEEEECCEE
Confidence 65 66655555554
No 308
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.89 E-value=1.1e-24 Score=186.75 Aligned_cols=160 Identities=18% Similarity=0.194 Sum_probs=113.0
Q ss_pred cccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCC--------ceecchhhhh------------hc----C-C
Q 025114 43 VLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGY--------SFFDCDTLIE------------QS----V-D 97 (257)
Q Consensus 43 ~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~--------~~~d~~~~~~------------~~----~-~ 97 (257)
+|+|+||+|++ |++++|+||||||||||+|+|+|++.+ +++++.++.. +. + .
T Consensus 1 ~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKR---GEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 58999999999 999999999999999999999998743 3555533210 00 1 1
Q ss_pred CCCHHHHHHH----hCc--hHHHHHHHHHHHHhccc------CccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-
Q 025114 98 GTSVAEIFKL----YGE--GFFREKETEVLQKLSLM------RQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL- 163 (257)
Q Consensus 98 ~~~v~e~~~~----~g~--~~~~~~~~~~l~~l~~~------~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L- 163 (257)
..++.+.+.. .+. ...+++..++++.+++. ++.+..||||++||+.+++++. +|++++||||+++|
T Consensus 78 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD 157 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLD 157 (230)
T ss_pred ccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 2455444321 111 11223456788888875 3688999999999999998876 79999999999998
Q ss_pred ----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcc
Q 025114 164 ----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANA 208 (257)
Q Consensus 164 ----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~ 208 (257)
+.++... +.+++.++|+++.+..+| |++..|.+|++...+++
T Consensus 158 ~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~---d~i~~l~~G~i~~~~~~ 210 (230)
T TIGR02770 158 VVNQARVLKLLRELRQLFGTGILLITHDLGVVARIA---DEVAVMDDGRIVERGTV 210 (230)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC---CEEEEEECCEEEEeCCH
Confidence 3444443 778999999976655555 66666666655444433
No 309
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.89 E-value=1.3e-24 Score=208.79 Aligned_cols=178 Identities=24% Similarity=0.227 Sum_probs=130.2
Q ss_pred eEEecceeeeeC-ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh---------
Q 025114 28 VLESGNVHAPID-EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE--------- 93 (257)
Q Consensus 28 ~l~~~~l~~~~~-~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~--------- 93 (257)
-++++||++.|+ ++++|+|+||++++ |+.++|+|||||||||++++|.+++ |.+.+|+.++..
T Consensus 328 ~I~f~~vsf~y~~~~~vl~~is~~i~~---Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~ 404 (567)
T COG1132 328 SIEFENVSFSYPGKKPVLKDISFSIEP---GEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKR 404 (567)
T ss_pred eEEEEEEEEEcCCCCccccCceEEEcC---CCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHh
Confidence 489999999999 68999999999999 9999999999999999999999998 557777755421
Q ss_pred -----h--cCCCCCHHHHHHHhCchHHHHHHHHHHH---------Hh--cccC---ccccccChhHhHHHHHHHHhh-CC
Q 025114 94 -----Q--SVDGTSVAEIFKLYGEGFFREKETEVLQ---------KL--SLMR---QLVVSTGGGAVTRPINWRYMQ-KG 151 (257)
Q Consensus 94 -----~--~~~~~~v~e~~~~~g~~~~~~~~~~~l~---------~l--~~~~---~~v~~lsgG~~qr~~~a~~l~-~~ 151 (257)
+ ....-|+.+++....+....+...++++ .+ |+.. ..-..|||||+||.++||++. +|
T Consensus 405 I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~ 484 (567)
T COG1132 405 IGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNP 484 (567)
T ss_pred ccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 1 1135678888876543222223333333 33 1111 334579999999999998775 79
Q ss_pred cEEEEECCHHHHH--------HHHH--hcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 152 ISVWLDVPLEALA--------QRIA--AVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 152 ~vl~LDep~~~L~--------~rl~--~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
++++|||||+.++ +.+. ..+.|+..+.|.++.... | |++..+.+|++..+|+.++.+
T Consensus 485 ~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~-a---D~IiVl~~G~i~e~G~h~eLl 551 (567)
T COG1132 485 PILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN-A---DRIIVLDNGRIVERGTHEELL 551 (567)
T ss_pred CEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh-C---CEEEEEECCEEEEecCHHHHH
Confidence 9999999999982 2221 135577889999765554 4 788788888777777766555
No 310
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.89 E-value=1.7e-24 Score=193.55 Aligned_cols=183 Identities=21% Similarity=0.275 Sum_probs=143.3
Q ss_pred CcceEEecceeeeeC----ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC---------Cceecchhh
Q 025114 25 SASVLESGNVHAPID----EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG---------YSFFDCDTL 91 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~----~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg---------~~~~d~~~~ 91 (257)
.+++|+++|+++.|+ ...++++|||+|.+ ||.++|+|.||||||-....+.+++. .+.+++.++
T Consensus 3 ~~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~---GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dl 79 (534)
T COG4172 3 TMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEA---GETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDL 79 (534)
T ss_pred CCcceeeeccEEEEecCCcceEeeccceeeecC---CCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhh
Confidence 467999999999996 57899999999999 99999999999999999999999983 456677665
Q ss_pred hhhc------C----------CCCC-----------HHHHHHHh---CchHHHHHHHHHHHHhcccC------ccccccC
Q 025114 92 IEQS------V----------DGTS-----------VAEIFKLY---GEGFFREKETEVLQKLSLMR------QLVVSTG 135 (257)
Q Consensus 92 ~~~~------~----------~~~~-----------v~e~~~~~---g~~~~~~~~~~~l~~l~~~~------~~v~~ls 135 (257)
.... . ..|+ +.|.+..+ .....+.+..++|+.+++.+ .++.+||
T Consensus 80 l~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLS 159 (534)
T COG4172 80 LAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELS 159 (534)
T ss_pred hcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccC
Confidence 3211 0 0111 22222221 12233455667888888865 7899999
Q ss_pred hhHhHHHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHH
Q 025114 136 GGAVTRPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERG 202 (257)
Q Consensus 136 gG~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~ 202 (257)
|||+||+.||.++. +|++++.||||..| ++.|+++ |..+..++||++-+..++ |++..|..|++
T Consensus 160 GGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~A---DrV~VM~~G~i 236 (534)
T COG4172 160 GGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFA---DRVYVMQHGEI 236 (534)
T ss_pred cchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhh---hhEEEEeccEE
Confidence 99999999997776 69999999999988 4666544 899999999999888887 99999999988
Q ss_pred HHHhcccceec
Q 025114 203 EAYANANARVS 213 (257)
Q Consensus 203 ~~y~~~~~~~~ 213 (257)
+..+.++.+++
T Consensus 237 vE~~~t~~lF~ 247 (534)
T COG4172 237 VETGTTETLFA 247 (534)
T ss_pred eecCcHHHHhh
Confidence 77777666553
No 311
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.89 E-value=1.2e-24 Score=213.59 Aligned_cols=174 Identities=21% Similarity=0.187 Sum_probs=123.9
Q ss_pred ceEEecceeeeeCc--cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhhh------
Q 025114 27 SVLESGNVHAPIDE--AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIEQ------ 94 (257)
Q Consensus 27 ~~l~~~~l~~~~~~--~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~~------ 94 (257)
..++++||+++|++ +++|+|+||+|++ |+.++|+|+||||||||+|+|+|++ |.+++|+.++.+-
T Consensus 462 ~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~---G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr 538 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQETPALDNVSLTIRP---GEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLR 538 (694)
T ss_pred ceEEEEEEEEEeCCCCccceeeeeEEECC---CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHH
Confidence 35899999999963 5699999999999 9999999999999999999999998 5567776543210
Q ss_pred ----------cCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC--------------ccccccChhHhHHHHHHHHhh-
Q 025114 95 ----------SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR--------------QLVVSTGGGAVTRPINWRYMQ- 149 (257)
Q Consensus 95 ----------~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~--------------~~v~~lsgG~~qr~~~a~~l~- 149 (257)
....-|+.+++.........+...++++..++.+ ..-..|||||+||.++||++.
T Consensus 539 ~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~ 618 (694)
T TIGR03375 539 RNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLR 618 (694)
T ss_pred hccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc
Confidence 1124578888765433222333344455444321 234579999999999998775
Q ss_pred CCcEEEEECCHHHHH--------HHHHh--cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhc
Q 025114 150 KGISVWLDVPLEALA--------QRIAA--VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN 207 (257)
Q Consensus 150 ~~~vl~LDep~~~L~--------~rl~~--~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~ 207 (257)
+|++++|||||++|+ +.+.. .+.|++.++|+++.. ..| |++..|.+|++...|+
T Consensus 619 ~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~-~~~---D~iivl~~G~i~e~G~ 682 (694)
T TIGR03375 619 DPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLL-DLV---DRIIVMDNGRIVADGP 682 (694)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHH-HhC---CEEEEEeCCEEEeeCC
Confidence 799999999999983 22322 367899999996543 233 6665665555443333
No 312
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.89 E-value=1.3e-24 Score=213.73 Aligned_cols=175 Identities=18% Similarity=0.161 Sum_probs=124.8
Q ss_pred eEEecceeeeeC-ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhhh--------
Q 025114 28 VLESGNVHAPID-EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIEQ-------- 94 (257)
Q Consensus 28 ~l~~~~l~~~~~-~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~~-------- 94 (257)
.++++||++.|+ ++++|+|+||+|++ |+.++|+|+||||||||+|+|+|++ |.+.+|+.++.+-
T Consensus 473 ~I~~~~vsf~y~~~~~iL~~isl~i~~---G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 549 (708)
T TIGR01193 473 DIVINDVSYSYGYGSNILSDISLTIKM---NSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQF 549 (708)
T ss_pred cEEEEEEEEEcCCCCcceeceeEEECC---CCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHh
Confidence 589999999997 46899999999999 9999999999999999999999998 5567777554210
Q ss_pred --------cCCCCCHHHHHHHhC-chHHHHHHHHHHHHhcccC--------------ccccccChhHhHHHHHHHHhh-C
Q 025114 95 --------SVDGTSVAEIFKLYG-EGFFREKETEVLQKLSLMR--------------QLVVSTGGGAVTRPINWRYMQ-K 150 (257)
Q Consensus 95 --------~~~~~~v~e~~~~~g-~~~~~~~~~~~l~~l~~~~--------------~~v~~lsgG~~qr~~~a~~l~-~ 150 (257)
.....|+.+++.... .....+...++++..++.+ .....|||||+||..+||++. +
T Consensus 550 i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~ 629 (708)
T TIGR01193 550 INYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTD 629 (708)
T ss_pred eEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhC
Confidence 112447888877642 2222223334444433211 334679999999999998875 7
Q ss_pred CcEEEEECCHHHHH--------HHHHh-cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccc
Q 025114 151 GISVWLDVPLEALA--------QRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN 209 (257)
Q Consensus 151 ~~vl~LDep~~~L~--------~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~ 209 (257)
|++++|||||++|+ +.+.. .+.|++.++|+++.. ..| |++..|.+|++...|+.+
T Consensus 630 p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~-~~~---D~i~~l~~G~i~~~G~~~ 693 (708)
T TIGR01193 630 SKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVA-KQS---DKIIVLDHGKIIEQGSHD 693 (708)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHH-HcC---CEEEEEECCEEEEECCHH
Confidence 99999999999982 33332 367889999996543 333 677666666554444433
No 313
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=6.6e-25 Score=188.05 Aligned_cols=176 Identities=16% Similarity=0.153 Sum_probs=134.9
Q ss_pred ceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh---------------
Q 025114 33 NVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE--------------- 93 (257)
Q Consensus 33 ~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~--------------- 93 (257)
|+.+.+|+.. | +++|+++. ..+++|.|+||||||||+++|+|++ |.+.+++..+..
T Consensus 5 ~~~~~lG~~~-l-~a~~~~p~---~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriG 79 (352)
T COG4148 5 NFRQRLGNFA-L-DANFTLPA---RGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIG 79 (352)
T ss_pred ehhhhcCceE-E-EEeccCCC---CceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheee
Confidence 3445555543 2 57888885 5899999999999999999999998 333333332211
Q ss_pred ------hcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH
Q 025114 94 ------QSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL 163 (257)
Q Consensus 94 ------~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L 163 (257)
..|+.+||..++.+.-+...+....++...||+.+ +.+..||||++||++|.++|. .|.++++|||.++|
T Consensus 80 YVFQDARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSL 159 (352)
T COG4148 80 YVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred eEeeccccccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhc
Confidence 12345666666655433333344567788889876 999999999999999998775 89999999999999
Q ss_pred -----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecchh
Q 025114 164 -----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLEN 216 (257)
Q Consensus 164 -----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~~ 216 (257)
++||++. .+.+..++|-++++.+++ |++..|-+|++.++|..++++....
T Consensus 160 D~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLA---d~vV~le~GkV~A~g~~e~v~~~~~ 221 (352)
T COG4148 160 DLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLA---DRVVVLENGKVKASGPLEEVWGSPD 221 (352)
T ss_pred ccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhh---heEEEecCCeEEecCcHHHHhcCcc
Confidence 6888865 788999999988888887 9999999999999999888886543
No 314
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=3.2e-24 Score=181.26 Aligned_cols=167 Identities=20% Similarity=0.135 Sum_probs=120.3
Q ss_pred ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC----Cceecchhh--hhhcC---CCCCHHHHHHHhCc
Q 025114 40 EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG----YSFFDCDTL--IEQSV---DGTSVAEIFKLYGE 110 (257)
Q Consensus 40 ~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg----~~~~d~~~~--~~~~~---~~~~v~e~~~~~g~ 110 (257)
..++|+||||++.+ ||.++|||+||||||||+|+|+|.+. ...+.++-. ++-.. +..|-.+++...+.
T Consensus 39 ~~~aL~disf~i~~---Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~ 115 (249)
T COG1134 39 EFWALKDISFEIYK---GERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGL 115 (249)
T ss_pred eEEEecCceEEEeC---CCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHH
Confidence 35699999999999 99999999999999999999999984 344444321 11111 13345555444321
Q ss_pred ------hHHHHHHHHHHHHhccc---CccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHh
Q 025114 111 ------GFFREKETEVLQKLSLM---RQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAA 169 (257)
Q Consensus 111 ------~~~~~~~~~~l~~l~~~---~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~ 169 (257)
....+...++.+--.+. +.++...|.|+..|.+.+-+.. +|+++++||-.+.- +..+.+
T Consensus 116 ~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~ 195 (249)
T COG1134 116 ILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVE 195 (249)
T ss_pred HhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHH
Confidence 22334445555443333 3899999999999999986665 89999999987654 333334
Q ss_pred cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 170 VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 170 ~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
.+.+++.++||++.+.++| |++..|.+|.+..+|.+++++
T Consensus 196 ~~~tiv~VSHd~~~I~~~C---d~~i~l~~G~i~~~G~~~~vi 235 (249)
T COG1134 196 KNKTIVLVSHDLGAIKQYC---DRAIWLEHGQIRMEGSPEEVI 235 (249)
T ss_pred cCCEEEEEECCHHHHHHhc---CeeEEEeCCEEEEcCCHHHHH
Confidence 5789999999999999999 888888888777666666554
No 315
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.89 E-value=4e-24 Score=182.55 Aligned_cols=167 Identities=21% Similarity=0.164 Sum_probs=120.1
Q ss_pred eEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh---------hhc--C---CCCCHHHHHHHhC-
Q 025114 49 QEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI---------EQS--V---DGTSVAEIFKLYG- 109 (257)
Q Consensus 49 l~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~---------~~~--~---~~~~v~e~~~~~g- 109 (257)
|+|++ |++++|+|+||||||||+|+|+|++ |.+++++.++. .+. + ...++.+.+....
T Consensus 1 l~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADK---GELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCC---CcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 56778 9999999999999999999999987 55666665321 110 0 1245666654321
Q ss_pred ---------chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-----------HH
Q 025114 110 ---------EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL-----------AQ 165 (257)
Q Consensus 110 ---------~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~~ 165 (257)
.....+...++++.+++.+ +.+..||||++||+.+++++. +|++++||||+++| +.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~ 157 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFI 157 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 0112234556788888754 678999999999999998876 79999999999998 34
Q ss_pred HHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecchhhhhhcc
Q 025114 166 RIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLG 222 (257)
Q Consensus 166 rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~~l~~~~~ 222 (257)
++.+.|.+++.++|+++.+..+| |++..+ +|++...+++++......+.+.|+
T Consensus 158 ~~~~~~~tvii~sH~~~~~~~~~---d~i~~l-~G~i~~~~~~~~~~~~~~~~~~~~ 210 (223)
T TIGR03771 158 ELAGAGTAILMTTHDLAQAMATC---DRVVLL-NGRVIADGTPQQLQDPAPWMTTFG 210 (223)
T ss_pred HHHHcCCEEEEEeCCHHHHHHhC---CEEEEE-CCEEEeecCHHHhcChHHHHHHhC
Confidence 55545789999999977666666 777555 677766666666665556666665
No 316
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.89 E-value=1.9e-24 Score=208.19 Aligned_cols=176 Identities=20% Similarity=0.203 Sum_probs=124.5
Q ss_pred eEEecceeeeeCc--cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh--------
Q 025114 28 VLESGNVHAPIDE--AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE-------- 93 (257)
Q Consensus 28 ~l~~~~l~~~~~~--~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~-------- 93 (257)
.++++||++.|++ +.+|+|+||+|++ |+.++|+|+||||||||+++|+|++ |.+.+++.++.+
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~---G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 417 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPA---GKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRN 417 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCC---CCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHh
Confidence 5999999999964 6799999999999 9999999999999999999999998 556777654321
Q ss_pred ------h--cCCCCCHHHHHHHhCc-hHHHHHHHHHHHHhcccC--------------ccccccChhHhHHHHHHHHhh-
Q 025114 94 ------Q--SVDGTSVAEIFKLYGE-GFFREKETEVLQKLSLMR--------------QLVVSTGGGAVTRPINWRYMQ- 149 (257)
Q Consensus 94 ------~--~~~~~~v~e~~~~~g~-~~~~~~~~~~l~~l~~~~--------------~~v~~lsgG~~qr~~~a~~l~- 149 (257)
+ ....-|+.+++..... ....+...++++.+++.+ ..-..|||||+||..+||++.
T Consensus 418 ~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~ 497 (582)
T PRK11176 418 QVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR 497 (582)
T ss_pred hceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence 1 1135578888765321 122233344454444321 223569999999999998775
Q ss_pred CCcEEEEECCHHHHH--------HHHHh--cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccc
Q 025114 150 KGISVWLDVPLEALA--------QRIAA--VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANA 210 (257)
Q Consensus 150 ~~~vl~LDep~~~L~--------~rl~~--~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~ 210 (257)
+|++++|||||++|+ +.+.. .+.+++.++|+++.. ..| |++..+.+|++...|+.++
T Consensus 498 ~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~-~~~---D~Ii~l~~g~i~e~g~~~~ 564 (582)
T PRK11176 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTI-EKA---DEILVVEDGEIVERGTHAE 564 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHH-HhC---CEEEEEECCEEEEeCCHHH
Confidence 799999999999982 33322 357899999996433 233 6776666665554444433
No 317
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.89 E-value=7.9e-24 Score=179.86 Aligned_cols=150 Identities=21% Similarity=0.203 Sum_probs=105.5
Q ss_pred EecceeeeeC-ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-----------
Q 025114 30 ESGNVHAPID-EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE----------- 93 (257)
Q Consensus 30 ~~~~l~~~~~-~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~----------- 93 (257)
.+.|+++.|+ +..+++++||+|++ |++++|+||||||||||+++|+|++ |.+++++..+..
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPT---GQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNR 78 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhc
Confidence 4678999997 56799999999999 9999999999999999999999987 444555432110
Q ss_pred h---------cCCCCCHHHHHHHhCchHHHHHHHHHHHHhccc--------------CccccccChhHhHHHHHHHHhh-
Q 025114 94 Q---------SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLM--------------RQLVVSTGGGAVTRPINWRYMQ- 149 (257)
Q Consensus 94 ~---------~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~--------------~~~v~~lsgG~~qr~~~a~~l~- 149 (257)
. .+...++.+.+..... .......++++.+++. ...+..||||++||+.+++++.
T Consensus 79 ~~i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 157 (218)
T cd03290 79 YSVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred ceEEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh
Confidence 0 0113466666544221 1111223344444331 2467899999999999998876
Q ss_pred CCcEEEEECCHHHHH--------H-----HHHhcCCCCccccCCCCC
Q 025114 150 KGISVWLDVPLEALA--------Q-----RIAAVGTDSRPLLHQCES 183 (257)
Q Consensus 150 ~~~vl~LDep~~~L~--------~-----rl~~~g~~~~~~~h~~~~ 183 (257)
+|.+++||||+++|+ + .++..+.+++.++|+.+.
T Consensus 158 ~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~ 204 (218)
T cd03290 158 NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY 204 (218)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH
Confidence 799999999999982 2 222346788999998543
No 318
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.89 E-value=7.7e-24 Score=206.21 Aligned_cols=179 Identities=22% Similarity=0.240 Sum_probs=137.1
Q ss_pred ceEEecceeeeeCc----cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-----
Q 025114 27 SVLESGNVHAPIDE----AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE----- 93 (257)
Q Consensus 27 ~~l~~~~l~~~~~~----~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~----- 93 (257)
++|+++|+++.|++ +.+|+++||++++ |++++|+|+||||||||+|+|+|++ |...+++.++..
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~---Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~ 79 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYA---GEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADA 79 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHH
Confidence 47999999999963 4699999999999 9999999999999999999999997 445555543210
Q ss_pred ------h----------cCCCCCHHHHHHHh----Cc--hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHh
Q 025114 94 ------Q----------SVDGTSVAEIFKLY----GE--GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYM 148 (257)
Q Consensus 94 ------~----------~~~~~~v~e~~~~~----g~--~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l 148 (257)
. .+.+.++.+.+... +. ...++...++++.+++.+ +.+..||+||+|++.+++++
T Consensus 80 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL 159 (648)
T PRK10535 80 LAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARAL 159 (648)
T ss_pred HHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHH
Confidence 0 11345667655431 11 122334467788888754 78899999999999999888
Q ss_pred h-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 149 Q-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 149 ~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
. +|++++||||+++| ++++.+.+.+++.++|+.+.. ..| |++..+.+|++...+++++..
T Consensus 160 ~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~-~~~---d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 160 MNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVA-AQA---ERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH-HhC---CEEEEEECCEEEeecCccccc
Confidence 6 79999999999988 455555578999999997654 345 888888888888888776554
No 319
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.89 E-value=3e-24 Score=205.44 Aligned_cols=170 Identities=24% Similarity=0.255 Sum_probs=118.2
Q ss_pred ceEEecceeeeeCc--cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-------
Q 025114 27 SVLESGNVHAPIDE--AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------- 93 (257)
Q Consensus 27 ~~l~~~~l~~~~~~--~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------- 93 (257)
..++++|+++.|++ +++|+|+||++++ |+.++|+||||||||||+++|+|.+ |.+.+++.++..
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~---G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~ 391 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTLRGISFRLQA---GEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFG 391 (544)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHh
Confidence 35999999999953 5799999999999 9999999999999999999999998 445666543311
Q ss_pred -------h--cCCCCCHHHHHHHhCchHHHHHHH---------HHHHHh--cccC---ccccccChhHhHHHHHHHHhh-
Q 025114 94 -------Q--SVDGTSVAEIFKLYGEGFFREKET---------EVLQKL--SLMR---QLVVSTGGGAVTRPINWRYMQ- 149 (257)
Q Consensus 94 -------~--~~~~~~v~e~~~~~g~~~~~~~~~---------~~l~~l--~~~~---~~v~~lsgG~~qr~~~a~~l~- 149 (257)
+ .....|+.+++.........+... +.++.+ ++.. .....|||||+||..+||++.
T Consensus 392 ~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~ 471 (544)
T TIGR01842 392 KHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG 471 (544)
T ss_pred hheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhc
Confidence 0 112447888776433211112111 233333 2221 456789999999999998875
Q ss_pred CCcEEEEECCHHHHH--------HHHH---hcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHH
Q 025114 150 KGISVWLDVPLEALA--------QRIA---AVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGE 203 (257)
Q Consensus 150 ~~~vl~LDep~~~L~--------~rl~---~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~ 203 (257)
+|++++|||||++|+ +.+. ..+.+++.++|+++.. ..| |++..|.+|++.
T Consensus 472 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~-~~~---d~i~~l~~G~i~ 532 (544)
T TIGR01842 472 DPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLL-GCV---DKILVLQDGRIA 532 (544)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHH-HhC---CEEEEEECCEEE
Confidence 799999999999982 2232 2467889999985432 233 555555555443
No 320
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.89 E-value=2.6e-24 Score=189.78 Aligned_cols=177 Identities=20% Similarity=0.138 Sum_probs=118.7
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchh-hhhh--cCCC
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDT-LIEQ--SVDG 98 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~-~~~~--~~~~ 98 (257)
.+.|+++|+++. ++.+|+++||+|.+ |++++|+|+||||||||+++|+|++ |.+++++.. +..+ .+..
T Consensus 37 ~~~l~i~nls~~--~~~vL~~vs~~i~~---Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~ 111 (282)
T cd03291 37 DNNLFFSNLCLV--GAPVLKNINLKIEK---GEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMP 111 (282)
T ss_pred CCeEEEEEEEEe--cccceeeeeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccc
Confidence 457999999995 46799999999999 9999999999999999999999987 333333310 0111 1113
Q ss_pred CCHHHHHHHhCchHHHHHHHHHHHHhccc--------------CccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH
Q 025114 99 TSVAEIFKLYGEGFFREKETEVLQKLSLM--------------RQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL 163 (257)
Q Consensus 99 ~~v~e~~~~~g~~~~~~~~~~~l~~l~~~--------------~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L 163 (257)
.++.+.+....... .....++++.+++. ++.+..||||++||+.+++++. +|.+++||||+++|
T Consensus 112 ~tv~enl~~~~~~~-~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gL 190 (282)
T cd03291 112 GTIKENIIFGVSYD-EYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYL 190 (282)
T ss_pred cCHHHHhhcccccC-HHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccC
Confidence 46777654321100 01111222222211 1335789999999999998876 79999999999888
Q ss_pred H--------HHH-H--hcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 164 A--------QRI-A--AVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 164 ~--------~rl-~--~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
+ +.+ . ..+.+++.++|+++.. ..| |++..|.+|++..+++++++.
T Consensus 191 D~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~-~~~---d~i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 191 DVFTEKEIFESCVCKLMANKTRILVTSKMEHL-KKA---DKILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEeCChHHH-HhC---CEEEEEECCEEEEECCHHHHH
Confidence 1 222 1 2367889999997654 345 777777777766666654443
No 321
>PRK13949 shikimate kinase; Provisional
Probab=99.89 E-value=8e-22 Score=161.52 Aligned_cols=165 Identities=35% Similarity=0.515 Sum_probs=138.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccCccccccChhH
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGA 138 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~~lsgG~ 138 (257)
.++|+|++||||||+++.|++.++++++|.|.+++..+ ++++.++|+..|+..|++.+.++++.+...+..+.++|||.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~-~~~~~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vis~Ggg~ 81 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRF-HKTVGDIFAERGEAVFRELERNMLHEVAEFEDVVISTGGGA 81 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHH-CccHHHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCCcc
Confidence 58999999999999999999999999999999998887 88999999999999999999999988765567899999999
Q ss_pred hHHHHHHHHhh-CCcEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecchhh
Q 025114 139 VTRPINWRYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENI 217 (257)
Q Consensus 139 ~qr~~~a~~l~-~~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~~l 217 (257)
+.......++. .+.++|||.|++.+.+|++.. ...||...+.+ ...+ .+.+..+++.|.+.|..++.++
T Consensus 82 ~~~~~~~~~l~~~~~vi~L~~~~~~~~~Ri~~~-~~~RP~~~~~~-~~~~---~~~i~~l~~~R~~~Y~~ad~~i----- 151 (169)
T PRK13949 82 PCFFDNMELMNASGTTVYLKVSPEVLFVRLRLA-KQQRPLLKGKS-DEEL---LDFIIEALEKRAPFYRQAKIIF----- 151 (169)
T ss_pred cCCHHHHHHHHhCCeEEEEECCHHHHHHHHhcC-CCCCCCCCCCC-hHHH---HHHHHHHHHHHHHHHHhCCEEE-----
Confidence 98888888886 588999999999999999753 23578775422 1122 2567789999999999877555
Q ss_pred hhhccccCCCCCCHHHHHHHHHHH
Q 025114 218 AVKLGHKDVSSLTPVTIAIEALEQ 241 (257)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~i~~~ 241 (257)
++++.++++++.+|++.
T Consensus 152 -------d~~~~~~~e~~~~I~~~ 168 (169)
T PRK13949 152 -------NADKLEDESQIEQLVQR 168 (169)
T ss_pred -------ECCCCCHHHHHHHHHHh
Confidence 57778999999988765
No 322
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.89 E-value=2.4e-24 Score=208.02 Aligned_cols=176 Identities=19% Similarity=0.151 Sum_probs=126.8
Q ss_pred eEEecceeeeeCc-cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh---------
Q 025114 28 VLESGNVHAPIDE-AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE--------- 93 (257)
Q Consensus 28 ~l~~~~l~~~~~~-~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~--------- 93 (257)
.++++|+++.|++ +++|+|+||++++ |+.++|+|+||||||||+|+|+|++ |.+.+|+.++..
T Consensus 340 ~i~~~~v~f~y~~~~~il~~i~l~i~~---Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~ 416 (592)
T PRK10790 340 RIDIDNVSFAYRDDNLVLQNINLSVPS---RGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQG 416 (592)
T ss_pred eEEEEEEEEEeCCCCceeeceeEEEcC---CCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhh
Confidence 5899999999964 6799999999999 9999999999999999999999998 556777755421
Q ss_pred -----h--cCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC--------------ccccccChhHhHHHHHHHHhh-CC
Q 025114 94 -----Q--SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR--------------QLVVSTGGGAVTRPINWRYMQ-KG 151 (257)
Q Consensus 94 -----~--~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~--------------~~v~~lsgG~~qr~~~a~~l~-~~ 151 (257)
+ ....-|+.+++.... ....+...++++.+++.+ ..-..|||||+||..+||++. +|
T Consensus 417 i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~ 495 (592)
T PRK10790 417 VAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTP 495 (592)
T ss_pred eEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 1 112457888877654 222334445555555431 234569999999999998775 79
Q ss_pred cEEEEECCHHHHH--------HHHHh--cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccce
Q 025114 152 ISVWLDVPLEALA--------QRIAA--VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANAR 211 (257)
Q Consensus 152 ~vl~LDep~~~L~--------~rl~~--~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~ 211 (257)
++++|||||++|+ +.+.. .+.+++.++|+++... .| |++..|.+|++...|+.++.
T Consensus 496 ~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~-~~---D~ii~l~~G~i~~~G~~~~L 561 (592)
T PRK10790 496 QILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIV-EA---DTILVLHRGQAVEQGTHQQL 561 (592)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hC---CEEEEEECCEEEEEcCHHHH
Confidence 9999999999982 23322 3578999999964332 23 66666666665555554443
No 323
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.89 E-value=2.8e-24 Score=207.31 Aligned_cols=173 Identities=19% Similarity=0.207 Sum_probs=121.4
Q ss_pred eEEecceeeeeCc-cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh---------
Q 025114 28 VLESGNVHAPIDE-AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE--------- 93 (257)
Q Consensus 28 ~l~~~~l~~~~~~-~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~--------- 93 (257)
.++++||++.|++ +.+|+|+||++++ |+.++|+|+||||||||+|+|+|++ |.+++++.++.+
T Consensus 334 ~I~~~~vsf~y~~~~~iL~~inl~i~~---G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 410 (588)
T PRK13657 334 AVEFDDVSFSYDNSRQGVEDVSFEAKP---GQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRN 410 (588)
T ss_pred eEEEEEEEEEeCCCCceecceeEEECC---CCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhh
Confidence 5999999999965 6799999999999 9999999999999999999999998 456666644321
Q ss_pred -----h--cCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC--------------ccccccChhHhHHHHHHHHhh-CC
Q 025114 94 -----Q--SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR--------------QLVVSTGGGAVTRPINWRYMQ-KG 151 (257)
Q Consensus 94 -----~--~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~--------------~~v~~lsgG~~qr~~~a~~l~-~~ 151 (257)
+ .....|+.+++.........+...++++.+++.+ .....|||||+||..+||++. +|
T Consensus 411 i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~ 490 (588)
T PRK13657 411 IAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDP 490 (588)
T ss_pred eEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 0 1135578888765432222233333444433211 233469999999999998775 79
Q ss_pred cEEEEECCHHHHH--------HHHHh--cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhc
Q 025114 152 ISVWLDVPLEALA--------QRIAA--VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN 207 (257)
Q Consensus 152 ~vl~LDep~~~L~--------~rl~~--~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~ 207 (257)
++++|||||++|+ +.+.. .+.+++.++|+.+.. +.+ |++..|.+|++...|+
T Consensus 491 ~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~-~~~---D~ii~l~~G~i~~~g~ 552 (588)
T PRK13657 491 PILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTV-RNA---DRILVFDNGRVVESGS 552 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHH-HhC---CEEEEEECCEEEEeCC
Confidence 9999999999982 33332 367899999995432 233 6665565555443333
No 324
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=6.5e-24 Score=197.74 Aligned_cols=177 Identities=20% Similarity=0.202 Sum_probs=131.4
Q ss_pred eEEecceeeeeCcc-ccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhhh--------
Q 025114 28 VLESGNVHAPIDEA-QVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIEQ-------- 94 (257)
Q Consensus 28 ~l~~~~l~~~~~~~-~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~~-------- 94 (257)
.++.+|+++.|.+. ++++|+||++++ |+.++|+|+||||||||+++|+|++ |.+.+++.+..+-
T Consensus 320 ei~~~~l~~~y~~g~~~l~~l~~t~~~---g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~ 396 (559)
T COG4988 320 EISLENLSFRYPDGKPALSDLNLTIKA---GQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQ 396 (559)
T ss_pred eeeecceEEecCCCCcccCCceeEecC---CcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhH
Confidence 34556999999764 899999999999 9999999999999999999999998 3445554332110
Q ss_pred --------cCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC---------cccc----ccChhHhHHHHHHHHhh-CCc
Q 025114 95 --------SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR---------QLVV----STGGGAVTRPINWRYMQ-KGI 152 (257)
Q Consensus 95 --------~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~---------~~v~----~lsgG~~qr~~~a~~l~-~~~ 152 (257)
....-|+.+++........++...+++++.++.+ ..+. .|||||.||+++||++. ++.
T Consensus 397 i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~ 476 (559)
T COG4988 397 ISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPAS 476 (559)
T ss_pred eeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCC
Confidence 1124477888776655444455566666665532 2233 39999999999998876 689
Q ss_pred EEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 153 SVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 153 vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
++++||||++| +.++.+ +.++.+++|++..+... |+|..|.+||+...|+.++..
T Consensus 477 l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~~~~~~----D~I~vld~G~l~~~g~~~~L~ 542 (559)
T COG4988 477 LLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLEDAADA----DRIVVLDNGRLVEQGTHEELS 542 (559)
T ss_pred EEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChHHHhcC----CEEEEecCCceeccCCHHHHh
Confidence 99999999998 344443 57899999996654432 888888889888777766543
No 325
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.89 E-value=1.7e-23 Score=181.35 Aligned_cols=151 Identities=25% Similarity=0.251 Sum_probs=106.2
Q ss_pred cccccccceEecC--CCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhh--hhhc---CCCCCHHHHHHHhC
Q 025114 41 AQVLKNKSQEIEP--YLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTL--IEQS---VDGTSVAEIFKLYG 109 (257)
Q Consensus 41 ~~~l~~isl~i~~--~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~--~~~~---~~~~~v~e~~~~~g 109 (257)
...+++++|++.+ ...|++++|+||||||||||+|+|+|++ |.+.+++..+ ..+. ....++.+++....
T Consensus 7 ~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~ 86 (246)
T cd03237 7 KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSIT 86 (246)
T ss_pred ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHh
Confidence 3466777777752 1229999999999999999999999987 4455555322 1111 12567888765321
Q ss_pred chH--HHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHh-cC
Q 025114 110 EGF--FREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAA-VG 171 (257)
Q Consensus 110 ~~~--~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~-~g 171 (257)
... ......++++.+++.+ +.+..||||++||+.+++++. +|++++||||+++| ++++.. .+
T Consensus 87 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 166 (246)
T cd03237 87 KDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNE 166 (246)
T ss_pred hhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 111 1122456778887754 788999999999999998876 79999999999998 344443 37
Q ss_pred CCCccccCCCCCCchhhHHHHHH
Q 025114 172 TDSRPLLHQCESGDAYTEALNRL 194 (257)
Q Consensus 172 ~~~~~~~h~~~~~~~~~~~~~~v 194 (257)
.++++++|+++.+..+| |++
T Consensus 167 ~tiiivsHd~~~~~~~~---d~i 186 (246)
T cd03237 167 KTAFVVEHDIIMIDYLA---DRL 186 (246)
T ss_pred CEEEEEeCCHHHHHHhC---CEE
Confidence 89999999966555555 555
No 326
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.89 E-value=2.7e-23 Score=180.85 Aligned_cols=159 Identities=20% Similarity=0.135 Sum_probs=110.9
Q ss_pred cceeeeeCcc-ccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC----Cce-----------ecchhhhhh-
Q 025114 32 GNVHAPIDEA-QVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG----YSF-----------FDCDTLIEQ- 94 (257)
Q Consensus 32 ~~l~~~~~~~-~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg----~~~-----------~d~~~~~~~- 94 (257)
.+|+++|++. .+|+|+|+ +.+ |++++|+||||||||||+|+|+|++. .++ +++.++...
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~---Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~ 79 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PRE---GQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYF 79 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCC---CCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhh
Confidence 5799999875 59999994 999 99999999999999999999999983 332 334332110
Q ss_pred --cC---------------CCCCHHHHHHHh-CchHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCc
Q 025114 95 --SV---------------DGTSVAEIFKLY-GEGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGI 152 (257)
Q Consensus 95 --~~---------------~~~~v~e~~~~~-g~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~ 152 (257)
.. ...++.+.+... .....+....++++.+++.+ +.+..||||++|++.+++++. +|+
T Consensus 80 ~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ 159 (255)
T cd03236 80 TKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDAD 159 (255)
T ss_pred HHhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 00 000111111110 11111234567888888754 788999999999999998876 799
Q ss_pred EEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHH
Q 025114 153 SVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTL 197 (257)
Q Consensus 153 vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l 197 (257)
+++||||+++| ++++.+.+.+++.++|+++.+..+| |++..+
T Consensus 160 illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~a---d~i~~l 212 (255)
T cd03236 160 FYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLS---DYIHCL 212 (255)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhC---CEEEEE
Confidence 99999999988 3455445788999999976555555 565344
No 327
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.89 E-value=3.4e-24 Score=210.46 Aligned_cols=178 Identities=20% Similarity=0.195 Sum_probs=126.6
Q ss_pred ceEEecceeeeeCc--cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-------
Q 025114 27 SVLESGNVHAPIDE--AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------- 93 (257)
Q Consensus 27 ~~l~~~~l~~~~~~--~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------- 93 (257)
..++++||++.|++ +.+|+|+||++++ |+.++|+|+||||||||+|+|+|++ |.+++|+.++.+
T Consensus 454 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~---G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r 530 (694)
T TIGR01846 454 GAITFENIRFRYAPDSPEVLSNLNLDIKP---GEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLR 530 (694)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECC---CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHH
Confidence 35999999999953 5699999999999 9999999999999999999999997 566777754321
Q ss_pred h---------cCCCCCHHHHHHHhCchHHHHHHHHHHHHhccc-----------C---ccccccChhHhHHHHHHHHhh-
Q 025114 94 Q---------SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLM-----------R---QLVVSTGGGAVTRPINWRYMQ- 149 (257)
Q Consensus 94 ~---------~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~-----------~---~~v~~lsgG~~qr~~~a~~l~- 149 (257)
. .....|+.+++.........+...++++..++. . .....|||||+||..+||++.
T Consensus 531 ~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~ 610 (694)
T TIGR01846 531 RQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG 610 (694)
T ss_pred HhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh
Confidence 0 113457888876643222222233333333321 1 345679999999999998876
Q ss_pred CCcEEEEECCHHHHH--------HHHHh--cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccce
Q 025114 150 KGISVWLDVPLEALA--------QRIAA--VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANAR 211 (257)
Q Consensus 150 ~~~vl~LDep~~~L~--------~rl~~--~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~ 211 (257)
+|++++|||||++|+ +.+.. .+.+++.++|+++... .| |++..|.+|++...|+.++.
T Consensus 611 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~---d~ii~l~~G~i~~~g~~~~l 678 (694)
T TIGR01846 611 NPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVR-AC---DRIIVLEKGQIAESGRHEEL 678 (694)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHH-hC---CEEEEEeCCEEEEeCCHHHH
Confidence 799999999999882 33332 3678999999965443 24 77767777766555554433
No 328
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=5.2e-23 Score=167.34 Aligned_cols=151 Identities=23% Similarity=0.245 Sum_probs=114.3
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhhhc-------
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIEQS------- 95 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~~~------- 95 (257)
++++.+|++...+++.++.++||++.+ ||.+.|.||||||||||+|+|+|++ |.+++.+..+-...
T Consensus 1 ~~L~a~~L~~~R~e~~lf~~L~f~l~~---Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l 77 (209)
T COG4133 1 MMLEAENLSCERGERTLFSDLSFTLNA---GEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQAL 77 (209)
T ss_pred CcchhhhhhhccCcceeecceeEEEcC---CCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHH
Confidence 357899999999999999999999999 9999999999999999999999998 44555544321110
Q ss_pred ---------CCCCCHHHHHHHhCch---HHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECC
Q 025114 96 ---------VDGTSVAEIFKLYGEG---FFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVP 159 (257)
Q Consensus 96 ---------~~~~~v~e~~~~~g~~---~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep 159 (257)
-..+|+.|++.++..- .-.....++++.+++.. -++..||.||+.|+++|++.. ..++.+||||
T Consensus 78 ~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP 157 (209)
T COG4133 78 LYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEP 157 (209)
T ss_pred HHhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCc
Confidence 0245677776654221 11344567888888864 789999999999999999886 6788999999
Q ss_pred HHHHHH----H----HH---hcCCCCccccCC
Q 025114 160 LEALAQ----R----IA---AVGTDSRPLLHQ 180 (257)
Q Consensus 160 ~~~L~~----r----l~---~~g~~~~~~~h~ 180 (257)
+++|++ + +. ..|.-++..+|+
T Consensus 158 ~taLDk~g~a~l~~l~~~H~~~GGiVllttHq 189 (209)
T COG4133 158 FTALDKEGVALLTALMAAHAAQGGIVLLTTHQ 189 (209)
T ss_pred ccccCHHHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 999831 1 11 234456667777
No 329
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.7e-23 Score=168.48 Aligned_cols=183 Identities=20% Similarity=0.247 Sum_probs=132.7
Q ss_pred CcceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCC----ceecch--------hhh
Q 025114 25 SASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGY----SFFDCD--------TLI 92 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~----~~~d~~--------~~~ 92 (257)
..|.|++++++|.|+.....+||||++.+ ||+++|+|.+|||||||+++|++.+-+ +.++.. .+.
T Consensus 3 ~~PLL~V~~lsk~Yg~~~gc~~vsF~l~P---GeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~ms 79 (258)
T COG4107 3 DKPLLSVSGLSKLYGPGKGCRDVSFDLYP---GEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMS 79 (258)
T ss_pred CCcceeehhhhhhhCCCcCccccceeecC---CcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhc
Confidence 35789999999999999999999999999 999999999999999999999998832 111110 000
Q ss_pred hh--------cC----------------CCCCHHHHHHHhCch---HHHHHHHHHHHHhcccC----ccccccChhHhHH
Q 025114 93 EQ--------SV----------------DGTSVAEIFKLYGEG---FFREKETEVLQKLSLMR----QLVVSTGGGAVTR 141 (257)
Q Consensus 93 ~~--------~~----------------~~~~v~e~~~~~g~~---~~~~~~~~~l~~l~~~~----~~v~~lsgG~~qr 141 (257)
|. .+ .|-.+.|-+-..|.. ..|....++|+++.+.. ..+..+|||++||
T Consensus 80 EaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQR 159 (258)
T COG4107 80 EAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQR 159 (258)
T ss_pred hHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHH
Confidence 00 00 122232322211211 24555667888887753 6788999999999
Q ss_pred HHHHHHhh-CCcEEEEECCHHHH-----------HHHHH-hcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcc
Q 025114 142 PINWRYMQ-KGISVWLDVPLEAL-----------AQRIA-AVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANA 208 (257)
Q Consensus 142 ~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~-~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~ 208 (257)
..+|+-+. .|.++++||||-+| ++-+. ..+..+..++||+.-+.-++ +++..|..|++...|-+
T Consensus 160 LQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla---~rlmvmk~g~vve~GLT 236 (258)
T COG4107 160 LQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLA---DRLMVMKQGQVVESGLT 236 (258)
T ss_pred HHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhh---hcceeecCCCEeccccc
Confidence 99998876 79999999999887 23332 24778999999976554444 77778888888888877
Q ss_pred cceec
Q 025114 209 NARVS 213 (257)
Q Consensus 209 ~~~~~ 213 (257)
+.++.
T Consensus 237 DrvLD 241 (258)
T COG4107 237 DRVLD 241 (258)
T ss_pred ccccc
Confidence 77773
No 330
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.88 E-value=1.4e-23 Score=172.92 Aligned_cols=119 Identities=24% Similarity=0.218 Sum_probs=90.1
Q ss_pred cceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC----CceecchhhhhhcCCCCCHHHHHHH
Q 025114 32 GNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG----YSFFDCDTLIEQSVDGTSVAEIFKL 107 (257)
Q Consensus 32 ~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg----~~~~d~~~~~~~~~~~~~v~e~~~~ 107 (257)
.||+|.|+++.+++++ |++++ |++++|+||||||||||+|+|+|++. .+.+++..
T Consensus 4 ~~l~~~~~~~~~l~~~-~~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~----------------- 62 (177)
T cd03222 4 PDCVKRYGVFFLLVEL-GVVKE---GEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT----------------- 62 (177)
T ss_pred CCeEEEECCEEEEccC-cEECC---CCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-----------------
Confidence 6899999999999984 99999 99999999999999999999999873 33333311
Q ss_pred hCchHHHHHHHHHHHHhcccCccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhcC-CCC
Q 025114 108 YGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAVG-TDS 174 (257)
Q Consensus 108 ~g~~~~~~~~~~~l~~l~~~~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g-~~~ 174 (257)
++...+.. .|||||+||+.+++++. +|++++||||+++| +.++...+ .++
T Consensus 63 ----------------i~~~~q~~-~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~ti 125 (177)
T cd03222 63 ----------------PVYKPQYI-DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTA 125 (177)
T ss_pred ----------------EEEEcccC-CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEE
Confidence 00000100 19999999999998876 79999999999998 23333343 788
Q ss_pred ccccCCCCCCchhh
Q 025114 175 RPLLHQCESGDAYT 188 (257)
Q Consensus 175 ~~~~h~~~~~~~~~ 188 (257)
+.++|+++.+..+|
T Consensus 126 iivsH~~~~~~~~~ 139 (177)
T cd03222 126 LVVEHDLAVLDYLS 139 (177)
T ss_pred EEEECCHHHHHHhC
Confidence 99999954443333
No 331
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.88 E-value=4.3e-24 Score=205.93 Aligned_cols=173 Identities=22% Similarity=0.170 Sum_probs=119.7
Q ss_pred ceEEecceeeeeCc-cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh--------
Q 025114 27 SVLESGNVHAPIDE-AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE-------- 93 (257)
Q Consensus 27 ~~l~~~~l~~~~~~-~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~-------- 93 (257)
..++++||++.|++ +++|+|+||++++ |++++|+||||||||||+++|+|.+ |.+.+++.++.+
T Consensus 333 ~~i~~~~v~~~y~~~~~~l~~i~~~i~~---G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~ 409 (585)
T TIGR01192 333 GAVEFRHITFEFANSSQGVFDVSFEAKA---GQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRK 409 (585)
T ss_pred CeEEEEEEEEECCCCCccccceeEEEcC---CCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHh
Confidence 35999999999975 5799999999999 9999999999999999999999987 455666644311
Q ss_pred ------h--cCCCCCHHHHHHHhCchHHHHHHHHHHH---------Hh--ccc---CccccccChhHhHHHHHHHHhh-C
Q 025114 94 ------Q--SVDGTSVAEIFKLYGEGFFREKETEVLQ---------KL--SLM---RQLVVSTGGGAVTRPINWRYMQ-K 150 (257)
Q Consensus 94 ------~--~~~~~~v~e~~~~~g~~~~~~~~~~~l~---------~l--~~~---~~~v~~lsgG~~qr~~~a~~l~-~ 150 (257)
+ .....|+.+++.........+...++++ .+ ++. ......|||||+||..+|+++. +
T Consensus 410 ~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~ 489 (585)
T TIGR01192 410 SIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKN 489 (585)
T ss_pred heEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 0 1134578888766432211111112222 22 111 1456779999999999998876 7
Q ss_pred CcEEEEECCHHHHH--------HHHHh--cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHh
Q 025114 151 GISVWLDVPLEALA--------QRIAA--VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYA 206 (257)
Q Consensus 151 ~~vl~LDep~~~L~--------~rl~~--~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~ 206 (257)
|++++|||||++|+ +.+.. .+.+++.++|+++.. ..| |++..|.+|++...|
T Consensus 490 p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~-~~~---d~i~~l~~G~i~~~g 551 (585)
T TIGR01192 490 APILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTV-RNA---DLVLFLDQGRLIEKG 551 (585)
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHH-HcC---CEEEEEECCEEEEEC
Confidence 99999999999882 22222 367899999996543 223 666555555544333
No 332
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.88 E-value=5.4e-24 Score=204.52 Aligned_cols=176 Identities=22% Similarity=0.196 Sum_probs=124.7
Q ss_pred eEEecceeeeeCc--cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh--------
Q 025114 28 VLESGNVHAPIDE--AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE-------- 93 (257)
Q Consensus 28 ~l~~~~l~~~~~~--~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~-------- 93 (257)
-++++||+++|.+ +++|+|+||++++ |++++|+|+||||||||+++|+|++ |.+++++.++.+
T Consensus 330 ~i~~~~v~f~y~~~~~~il~~inl~i~~---G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~ 406 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPALDSISLVIEP---GETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRR 406 (571)
T ss_pred eEEEEEEEEEcCCCCCccccCeeEEecC---CCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHh
Confidence 5999999999964 6799999999999 9999999999999999999999998 566777754321
Q ss_pred ------h--cCCCCCHHHHHHHhCc-hHHHHHHHHHHHHhcccC--------------ccccccChhHhHHHHHHHHhh-
Q 025114 94 ------Q--SVDGTSVAEIFKLYGE-GFFREKETEVLQKLSLMR--------------QLVVSTGGGAVTRPINWRYMQ- 149 (257)
Q Consensus 94 ------~--~~~~~~v~e~~~~~g~-~~~~~~~~~~l~~l~~~~--------------~~v~~lsgG~~qr~~~a~~l~- 149 (257)
+ ....-|+.+++..... ....++..++++.+++.+ ..-..|||||+||.++||++.
T Consensus 407 ~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~ 486 (571)
T TIGR02203 407 QVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLK 486 (571)
T ss_pred hceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 0 1135578888765432 222334445555554421 123469999999999998875
Q ss_pred CCcEEEEECCHHHHH--------HHHHh--cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccc
Q 025114 150 KGISVWLDVPLEALA--------QRIAA--VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANA 210 (257)
Q Consensus 150 ~~~vl~LDep~~~L~--------~rl~~--~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~ 210 (257)
+|++++|||||++|+ +.+.. .+.+++.++|+.+. ...| |++..+.+|++..+|+.++
T Consensus 487 ~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~-~~~~---D~ii~l~~g~i~~~g~~~~ 553 (571)
T TIGR02203 487 DAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLST-IEKA---DRIVVMDDGRIVERGTHNE 553 (571)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHH-HHhC---CEEEEEeCCEEEeeCCHHH
Confidence 799999999999982 22322 36789999999543 2334 6665565555544444443
No 333
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.88 E-value=1.2e-23 Score=174.40 Aligned_cols=170 Identities=22% Similarity=0.234 Sum_probs=127.3
Q ss_pred eEEecceeeeeC-----ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhhh----
Q 025114 28 VLESGNVHAPID-----EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIEQ---- 94 (257)
Q Consensus 28 ~l~~~~l~~~~~-----~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~~---- 94 (257)
|+++.|+++.|+ ++++|+++||+|.. |+++.|||.||||||||++.|+|.+ |.+++|+.++...
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~---g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~ 77 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAE---GDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAK 77 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecC---CceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHH
Confidence 467888888875 36799999999999 9999999999999999999999988 6788888776321
Q ss_pred ---------------cCCCCCHHHHHHHh---Cch---------HHHHHHHHHHHHhcc--c---CccccccChhHhHHH
Q 025114 95 ---------------SVDGTSVAEIFKLY---GEG---------FFREKETEVLQKLSL--M---RQLVVSTGGGAVTRP 142 (257)
Q Consensus 95 ---------------~~~~~~v~e~~~~~---g~~---------~~~~~~~~~l~~l~~--~---~~~v~~lsgG~~qr~ 142 (257)
....+|+.|++... |+. ..++...+-++.+++ . ..++.-|||||+|-+
T Consensus 78 RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQal 157 (263)
T COG1101 78 RANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQAL 157 (263)
T ss_pred HhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHH
Confidence 12456788876542 110 112222344555544 2 278999999999999
Q ss_pred HHH-HHhhCCcEEEEECCHHHHH------------HHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHH
Q 025114 143 INW-RYMQKGISVWLDVPLEALA------------QRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGE 203 (257)
Q Consensus 143 ~~a-~~l~~~~vl~LDep~~~L~------------~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~ 203 (257)
.+. +.++.|++++|||-|++|+ +-+.....+..+++|+++.+..|- +|.+.|.+|+++
T Consensus 158 sL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG---~RlImLh~G~Iv 228 (263)
T COG1101 158 SLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYG---NRLIMLHSGKIV 228 (263)
T ss_pred HHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhC---CeEEEEeCCeEE
Confidence 987 4556799999999999983 222335789999999988887776 777777777654
No 334
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.88 E-value=5.9e-24 Score=175.05 Aligned_cols=126 Identities=19% Similarity=0.190 Sum_probs=92.9
Q ss_pred ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHH
Q 025114 40 EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETE 119 (257)
Q Consensus 40 ~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~ 119 (257)
.+++|+|+||++++ |++++|+||||||||||+|++.+.-|...+.+..- .+....+. +... .+
T Consensus 7 ~~~~l~~isl~i~~---G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~---~~~~~~~~---------~~~q--~~ 69 (176)
T cd03238 7 NVHNLQNLDVSIPL---NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLP---KFSRNKLI---------FIDQ--LQ 69 (176)
T ss_pred eeeeecceEEEEcC---CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCccc---ccccccEE---------EEhH--HH
Confidence 46799999999999 99999999999999999999975445544433210 00000000 0001 45
Q ss_pred HHHHhccc----CccccccChhHhHHHHHHHHhh-C--CcEEEEECCHHHH-----------HHHHHhcCCCCccccCCC
Q 025114 120 VLQKLSLM----RQLVVSTGGGAVTRPINWRYMQ-K--GISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQC 181 (257)
Q Consensus 120 ~l~~l~~~----~~~v~~lsgG~~qr~~~a~~l~-~--~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~ 181 (257)
+++.+++. ++.+..||||++||+.+++++. + |++++||||+++| ++++.+.|.++++++|++
T Consensus 70 ~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~ 149 (176)
T cd03238 70 FLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNL 149 (176)
T ss_pred HHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 67888764 3678999999999999998775 8 9999999999998 334443588999999995
Q ss_pred C
Q 025114 182 E 182 (257)
Q Consensus 182 ~ 182 (257)
+
T Consensus 150 ~ 150 (176)
T cd03238 150 D 150 (176)
T ss_pred H
Confidence 4
No 335
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.88 E-value=8.6e-24 Score=179.34 Aligned_cols=156 Identities=17% Similarity=0.025 Sum_probs=106.0
Q ss_pred ccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCce-ecchhh-h---hhcCCCCCHHHHHHHhCc--
Q 025114 42 QVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSF-FDCDTL-I---EQSVDGTSVAEIFKLYGE-- 110 (257)
Q Consensus 42 ~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~-~d~~~~-~---~~~~~~~~v~e~~~~~g~-- 110 (257)
++|+|+||+|++ |++++|+||||||||||+|+|+|++ |... +++..+ . ...+..+++.+++.....
T Consensus 1 ~vl~~vs~~i~~---Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~ 77 (213)
T PRK15177 1 VVLDKTDFVMGY---HEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLY 77 (213)
T ss_pred CeeeeeeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHc
Confidence 479999999999 9999999999999999999999987 4443 444322 1 112335678887654211
Q ss_pred -hHHHHHHHHHHHHhccc---CccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHHH--------HHHHh--cCCCCc
Q 025114 111 -GFFREKETEVLQKLSLM---RQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEALA--------QRIAA--VGTDSR 175 (257)
Q Consensus 111 -~~~~~~~~~~l~~l~~~---~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L~--------~rl~~--~g~~~~ 175 (257)
....+....+.+.+++. ++.+..+|||++||+.+++++. +|++++||||+++++ +.+.. .+.+++
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii 157 (213)
T PRK15177 78 GLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLI 157 (213)
T ss_pred CCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEE
Confidence 00111122233334443 3788999999999999998876 799999999987762 22321 245788
Q ss_pred cccCCCCCCchhhHHHHHHHHHHHHHHH
Q 025114 176 PLLHQCESGDAYTEALNRLSTLWEERGE 203 (257)
Q Consensus 176 ~~~h~~~~~~~~~~~~~~v~~l~~~r~~ 203 (257)
.++|+++.+..+| |++..|.+|++.
T Consensus 158 ~vsH~~~~~~~~~---d~i~~l~~G~i~ 182 (213)
T PRK15177 158 VLTHNPRLIKEHC---HAFGVLLHGKIT 182 (213)
T ss_pred EEECCHHHHHHhc---CeeEEEECCeEE
Confidence 8999976655555 666555555443
No 336
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.88 E-value=2.2e-22 Score=191.86 Aligned_cols=152 Identities=23% Similarity=0.250 Sum_probs=113.3
Q ss_pred eEEecceeeeeCc--cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh--------
Q 025114 28 VLESGNVHAPIDE--AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE-------- 93 (257)
Q Consensus 28 ~l~~~~l~~~~~~--~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~-------- 93 (257)
.++++||++.|++ +++|+|+||++++ |+.++|+||||||||||+|+|+|++ |.+.+++.++.+
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~---G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~ 396 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPP---GERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRD 396 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECC---CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHh
Confidence 5999999999976 4699999999999 9999999999999999999999988 456666654321
Q ss_pred ------h--cCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC--------------ccccccChhHhHHHHHHHHhh-C
Q 025114 94 ------Q--SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR--------------QLVVSTGGGAVTRPINWRYMQ-K 150 (257)
Q Consensus 94 ------~--~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~--------------~~v~~lsgG~~qr~~~a~~l~-~ 150 (257)
+ .....|+.+++.........+...++++..++.+ .....|||||+||..+||++. +
T Consensus 397 ~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~ 476 (529)
T TIGR02857 397 QIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD 476 (529)
T ss_pred heEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence 0 1135688888766433222233344555444321 345679999999999998875 7
Q ss_pred CcEEEEECCHHHHH--------HHHHh--cCCCCccccCCCC
Q 025114 151 GISVWLDVPLEALA--------QRIAA--VGTDSRPLLHQCE 182 (257)
Q Consensus 151 ~~vl~LDep~~~L~--------~rl~~--~g~~~~~~~h~~~ 182 (257)
|++++|||||++|+ +.+.. .+.+++.++|+++
T Consensus 477 ~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~ 518 (529)
T TIGR02857 477 APLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLA 518 (529)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHH
Confidence 99999999999982 33332 3678899999853
No 337
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.88 E-value=1.5e-23 Score=201.59 Aligned_cols=176 Identities=18% Similarity=0.147 Sum_probs=123.4
Q ss_pred eEEecceeeeeCc--cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh--------
Q 025114 28 VLESGNVHAPIDE--AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE-------- 93 (257)
Q Consensus 28 ~l~~~~l~~~~~~--~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~-------- 93 (257)
.++++|+++.|++ +.+|+++||++++ |++++|+||||||||||+++|+|++ |.+.+++.++.+
T Consensus 313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~---G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~ 389 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHPALENVNFTLKP---GQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRS 389 (569)
T ss_pred cEEEEEEEEECCCCCCccccCeeEEECC---CCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHh
Confidence 5899999999964 5699999999999 9999999999999999999999988 445666544321
Q ss_pred ------h--cCCCCCHHHHHHHhCchHHHHHHHHHHHHhccc--------------CccccccChhHhHHHHHHHHhh-C
Q 025114 94 ------Q--SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLM--------------RQLVVSTGGGAVTRPINWRYMQ-K 150 (257)
Q Consensus 94 ------~--~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~--------------~~~v~~lsgG~~qr~~~a~~l~-~ 150 (257)
+ .....|+.+++.........+...++++..++. ......|||||+||..+||++. +
T Consensus 390 ~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~ 469 (569)
T PRK10789 390 RLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLN 469 (569)
T ss_pred heEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 0 112347888776532222222223344433321 1335679999999999998875 7
Q ss_pred CcEEEEECCHHHHH--------HHHHh--cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccc
Q 025114 151 GISVWLDVPLEALA--------QRIAA--VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANA 210 (257)
Q Consensus 151 ~~vl~LDep~~~L~--------~rl~~--~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~ 210 (257)
|++++||||+++|+ +.+.. .+.+++.++|+++.. ..| |++..|.+|++...|+.++
T Consensus 470 ~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~-~~~---d~i~~l~~G~i~~~g~~~~ 535 (569)
T PRK10789 470 AEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSAL-TEA---SEILVMQHGHIAQRGNHDQ 535 (569)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHH-HcC---CEEEEEeCCEEEEecCHHH
Confidence 99999999999982 33332 467899999996543 223 6766666666555555443
No 338
>PRK13409 putative ATPase RIL; Provisional
Probab=99.87 E-value=9.4e-23 Score=196.20 Aligned_cols=156 Identities=22% Similarity=0.176 Sum_probs=113.7
Q ss_pred cceeeeeCcc-ccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC----Cce-----------ecchhhhhh-
Q 025114 32 GNVHAPIDEA-QVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG----YSF-----------FDCDTLIEQ- 94 (257)
Q Consensus 32 ~~l~~~~~~~-~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg----~~~-----------~d~~~~~~~- 94 (257)
++++++||.. .+|++++ .+++ |++++|+||||||||||+|+|+|++. ... +++.++...
T Consensus 77 ~~~~~~yg~~~~~L~~l~-~i~~---Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~ 152 (590)
T PRK13409 77 EEPVHRYGVNGFKLYGLP-IPKE---GKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYF 152 (590)
T ss_pred cCceEEecCCceeEecCC-cCCC---CCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHH
Confidence 3489999874 6999999 8999 99999999999999999999999873 332 344332110
Q ss_pred ------cC---------------CCCCHHHHHHHhCchHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-
Q 025114 95 ------SV---------------DGTSVAEIFKLYGEGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ- 149 (257)
Q Consensus 95 ------~~---------------~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~- 149 (257)
.. ...++.+++... ..+....++++.+++.+ +.+..|||||+||+++++++.
T Consensus 153 ~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~ 229 (590)
T PRK13409 153 KKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---DERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLR 229 (590)
T ss_pred HHHhccCcceeecccchhhhhhhhcchHHHHHHhh---hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 00 001333333211 11234567888888853 889999999999999998876
Q ss_pred CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHH
Q 025114 150 KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLW 198 (257)
Q Consensus 150 ~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~ 198 (257)
+|++++||||+++| ++++.+ |.+++.++|+++.+..++ |++..++
T Consensus 230 ~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~---D~v~vl~ 285 (590)
T PRK13409 230 DADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLA---DNVHIAY 285 (590)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhC---CEEEEEe
Confidence 79999999999998 455555 889999999977666665 6664443
No 339
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.87 E-value=8.4e-23 Score=187.02 Aligned_cols=179 Identities=23% Similarity=0.260 Sum_probs=136.3
Q ss_pred eEEecceeeeeC--ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhhh-------
Q 025114 28 VLESGNVHAPID--EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIEQ------- 94 (257)
Q Consensus 28 ~l~~~~l~~~~~--~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~~------- 94 (257)
.|.++++++.-. ++++|+++||++.+ |+.++||||||||||||.|+|.|.. |.+.+|+-++...
T Consensus 334 ~L~Ve~l~~~PPg~~~pil~~isF~l~~---G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~ 410 (580)
T COG4618 334 ALSVERLTAAPPGQKKPILKGISFALQA---GEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGR 410 (580)
T ss_pred eeeEeeeeecCCCCCCcceecceeEecC---CceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhcc
Confidence 689999988653 46899999999999 9999999999999999999999986 5667777654211
Q ss_pred ---------cCCCCCHHHHHHHhCchHHHHHH---------HHHHHHhcccC-----ccccccChhHhHHHHHHHHhh-C
Q 025114 95 ---------SVDGTSVAEIFKLYGEGFFREKE---------TEVLQKLSLMR-----QLVVSTGGGAVTRPINWRYMQ-K 150 (257)
Q Consensus 95 ---------~~~~~~v~e~~~~~g~~~~~~~~---------~~~l~~l~~~~-----~~v~~lsgG~~qr~~~a~~l~-~ 150 (257)
..+.-|+.+++..++++...+.. ++++-++-... ..-..|||||+||..+||++- +
T Consensus 411 hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~ 490 (580)
T COG4618 411 HIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGD 490 (580)
T ss_pred ccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCC
Confidence 01244788888877743322222 23333332221 345679999999999999886 7
Q ss_pred CcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceec
Q 025114 151 GISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVS 213 (257)
Q Consensus 151 ~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~ 213 (257)
|.+++||||-++| +..++.+|.+++.++|-... ... .|++..|.+|++..||+.++++.
T Consensus 491 P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~-L~~---~Dkilvl~~G~~~~FG~r~eVLa 560 (580)
T COG4618 491 PFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSA-LAS---VDKILVLQDGRIAAFGPREEVLA 560 (580)
T ss_pred CcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHH-Hhh---cceeeeecCChHHhcCCHHHHHH
Confidence 9999999999988 46667789999999998543 222 38999999999999999887763
No 340
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.87 E-value=2e-23 Score=200.83 Aligned_cols=170 Identities=21% Similarity=0.198 Sum_probs=118.9
Q ss_pred ceEEecceeeeeCc---cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh------
Q 025114 27 SVLESGNVHAPIDE---AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------ 93 (257)
Q Consensus 27 ~~l~~~~l~~~~~~---~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------ 93 (257)
..++++||++.|.+ +.+|+|+||++++ |+.++|+|+||||||||+|+|+|++ |...+++.++..
T Consensus 336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~---Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~ 412 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPALDGLNLTVRP---GETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAEL 412 (576)
T ss_pred ceEEEEEEEEECCCCCCCccccceeEEecC---CCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHH
Confidence 35899999999964 5699999999999 9999999999999999999999998 445666643311
Q ss_pred --------h--cCCCCCHHHHHHHhCchHHHHHHHHHHHHhccc-----------C---ccccccChhHhHHHHHHHHhh
Q 025114 94 --------Q--SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLM-----------R---QLVVSTGGGAVTRPINWRYMQ 149 (257)
Q Consensus 94 --------~--~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~-----------~---~~v~~lsgG~~qr~~~a~~l~ 149 (257)
+ .....|+.+++.........+...++++.+++. . .....|||||+||..+||++.
T Consensus 413 ~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~ 492 (576)
T TIGR02204 413 RARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAIL 492 (576)
T ss_pred HHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHH
Confidence 0 113557888876543222223333444443321 1 334569999999999998875
Q ss_pred -CCcEEEEECCHHHHH--------HHHHh--cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHH
Q 025114 150 -KGISVWLDVPLEALA--------QRIAA--VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGE 203 (257)
Q Consensus 150 -~~~vl~LDep~~~L~--------~rl~~--~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~ 203 (257)
+|++++|||||++|+ +.+.. .+.+++.++|+++.. ..+ |++..+.+|++.
T Consensus 493 ~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~-~~~---d~vi~l~~g~~~ 553 (576)
T TIGR02204 493 KDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATV-LKA---DRIVVMDQGRIV 553 (576)
T ss_pred hCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHH-HhC---CEEEEEECCEEE
Confidence 799999999999982 23332 367899999985332 223 555455444443
No 341
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.87 E-value=2.1e-23 Score=217.27 Aligned_cols=165 Identities=18% Similarity=0.152 Sum_probs=118.9
Q ss_pred eEEecceeeeeC---ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCC---------------------
Q 025114 28 VLESGNVHAPID---EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGY--------------------- 83 (257)
Q Consensus 28 ~l~~~~l~~~~~---~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~--------------------- 83 (257)
-|+++||+|.|. +.++|+|+||+|++ |+.++|+||||||||||+++|.|++.+
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~---G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~ 1241 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDS---KKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQD 1241 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcC---CCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccc
Confidence 599999999995 35799999999999 999999999999999999999998764
Q ss_pred -------------------------------------ceecchhhhhh----------------cCCCCCHHHHHHHhCc
Q 025114 84 -------------------------------------SFFDCDTLIEQ----------------SVDGTSVAEIFKLYGE 110 (257)
Q Consensus 84 -------------------------------------~~~d~~~~~~~----------------~~~~~~v~e~~~~~g~ 110 (257)
+++|+.++-+- ..+..|+.|++....+
T Consensus 1242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~ 1321 (1466)
T PTZ00265 1242 YQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE 1321 (1466)
T ss_pred cccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCC
Confidence 45565544210 1246688888877533
Q ss_pred hHHHHHHHHHHHHhcccC--------------ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-----------H
Q 025114 111 GFFREKETEVLQKLSLMR--------------QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL-----------A 164 (257)
Q Consensus 111 ~~~~~~~~~~l~~l~~~~--------------~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~ 164 (257)
..-.+...++++..++.+ ..-..|||||+||.++||++. +|++++|||||++| +
T Consensus 1322 ~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L 1401 (1466)
T PTZ00265 1322 DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI 1401 (1466)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence 333333444555444321 334579999999999998875 79999999999998 2
Q ss_pred HHHH-hcCCCCccccCCCCCCchhhHHHHHHHHHHH
Q 025114 165 QRIA-AVGTDSRPLLHQCESGDAYTEALNRLSTLWE 199 (257)
Q Consensus 165 ~rl~-~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~ 199 (257)
.++. ..+.|++.++|.+.... .| |++..|.+
T Consensus 1402 ~~~~~~~~~TvIiIaHRlsti~-~a---D~Ivvl~~ 1433 (1466)
T PTZ00265 1402 VDIKDKADKTIITIAHRIASIK-RS---DKIVVFNN 1433 (1466)
T ss_pred HHHhccCCCEEEEEechHHHHH-hC---CEEEEEeC
Confidence 3332 13678999999854322 22 55544444
No 342
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.87 E-value=2.1e-22 Score=196.45 Aligned_cols=153 Identities=16% Similarity=0.181 Sum_probs=111.6
Q ss_pred ceEEecceeeeeC-ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchh---hhhhc--C
Q 025114 27 SVLESGNVHAPID-EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDT---LIEQS--V 96 (257)
Q Consensus 27 ~~l~~~~l~~~~~-~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~---~~~~~--~ 96 (257)
.+|+++||++.|. ++.+|+++||++++ |++++|+||||||||||+|+|+|++ |...++... +..+. .
T Consensus 450 ~~i~~~nv~~~~~~~~~il~~isl~i~~---Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l 526 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDVLIESLSFEVPS---GNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYM 526 (659)
T ss_pred CeEEEEeeEEECCCCCeeeecceEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCC
Confidence 4699999999994 56799999999999 9999999999999999999999986 333332211 01111 1
Q ss_pred CCCCHHHHHHHhC-------chHHHHHHHHHHHHhcccC---c---------cccccChhHhHHHHHHHHhh-CCcEEEE
Q 025114 97 DGTSVAEIFKLYG-------EGFFREKETEVLQKLSLMR---Q---------LVVSTGGGAVTRPINWRYMQ-KGISVWL 156 (257)
Q Consensus 97 ~~~~v~e~~~~~g-------~~~~~~~~~~~l~~l~~~~---~---------~v~~lsgG~~qr~~~a~~l~-~~~vl~L 156 (257)
...|+.+.+.... .....+...++++.+++.+ + ....|||||+||+.+|+++. +|++++|
T Consensus 527 ~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illL 606 (659)
T TIGR00954 527 TLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAIL 606 (659)
T ss_pred CCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 2337888765421 1111233456777777643 2 23689999999999998876 7999999
Q ss_pred ECCHHHHH--------HHHHhcCCCCccccCCCC
Q 025114 157 DVPLEALA--------QRIAAVGTDSRPLLHQCE 182 (257)
Q Consensus 157 Dep~~~L~--------~rl~~~g~~~~~~~h~~~ 182 (257)
||||++|+ +.+.+.|.+++.++|+++
T Consensus 607 DEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~ 640 (659)
T TIGR00954 607 DECTSAVSVDVEGYMYRLCREFGITLFSVSHRKS 640 (659)
T ss_pred eCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchH
Confidence 99999982 333445788999999954
No 343
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.87 E-value=9e-21 Score=155.75 Aligned_cols=166 Identities=30% Similarity=0.541 Sum_probs=140.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccCccccccCh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGG 136 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~~lsg 136 (257)
...++|+|++||||||+++.|++.++..+++.|..++... +.++.++++..|+..|+..+.++++.+......+.+++|
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~-g~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vi~~gg 82 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT-GADIGWVFDVEGEEGFRDREEKVINELTEKQGIVLATGG 82 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHh-CcCHhHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 5679999999999999999999999999999998888777 889999999999999999998999887655577888999
Q ss_pred hHhHHHHHHHHhh-CCcEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhc-ccceecc
Q 025114 137 GAVTRPINWRYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN-ANARVSL 214 (257)
Q Consensus 137 G~~qr~~~a~~l~-~~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~-~~~~~~~ 214 (257)
|...+..+...|. .+.++|||.|.+.+.+|+.. ...+|...+.+. .+.+..+++.|.+.|.. ++.++
T Consensus 83 g~v~~~~~~~~l~~~~~vv~L~~~~e~~~~Ri~~--~~~rP~~~~~~~-------~~~~~~l~~~R~~~Y~~~Ad~~i-- 151 (172)
T PRK05057 83 GSVKSRETRNRLSARGVVVYLETTIEKQLARTQR--DKKRPLLQVDDP-------REVLEALANERNPLYEEIADVTI-- 151 (172)
T ss_pred chhCCHHHHHHHHhCCEEEEEeCCHHHHHHHHhC--CCCCCCCCCCCH-------HHHHHHHHHHHHHHHHhhCCEEE--
Confidence 9888888787776 58899999999999999974 346787765211 14577889999999988 55555
Q ss_pred hhhhhhccccCCCCCCHHHHHHHHHHHHHh
Q 025114 215 ENIAVKLGHKDVSSLTPVTIAIEALEQIEG 244 (257)
Q Consensus 215 ~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~ 244 (257)
++++.+++++++.|++.+++
T Consensus 152 ----------dt~~~s~~ei~~~i~~~l~~ 171 (172)
T PRK05057 152 ----------RTDDQSAKVVANQIIHMLES 171 (172)
T ss_pred ----------ECCCCCHHHHHHHHHHHHhh
Confidence 67889999999999888764
No 344
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.87 E-value=5.9e-23 Score=213.51 Aligned_cols=176 Identities=20% Similarity=0.215 Sum_probs=132.2
Q ss_pred eEEecceeeeeC----ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh-------CCceecchhhh----
Q 025114 28 VLESGNVHAPID----EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL-------GYSFFDCDTLI---- 92 (257)
Q Consensus 28 ~l~~~~l~~~~~----~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l-------g~~~~d~~~~~---- 92 (257)
+++++||++.|+ ++.+|+|||+++++ |++++|+||||||||||+++|+|++ |.+.+++.++.
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~---Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~ 835 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKP---GTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQ 835 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEEC---CEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhh
Confidence 589999999994 46799999999999 9999999999999999999999987 44566664321
Q ss_pred ------hh---cCCCCCHHHHHHHhC---------chHHHHHHHHHHHHhcccC---cccc----ccChhHhHHHHHHHH
Q 025114 93 ------EQ---SVDGTSVAEIFKLYG---------EGFFREKETEVLQKLSLMR---QLVV----STGGGAVTRPINWRY 147 (257)
Q Consensus 93 ------~~---~~~~~~v~e~~~~~g---------~~~~~~~~~~~l~~l~~~~---~~v~----~lsgG~~qr~~~a~~ 147 (257)
.+ .....|+.|.+.... .....++..++++.+++.+ ..+. .|||||+||+.+++.
T Consensus 836 ~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~a 915 (1394)
T TIGR00956 836 RSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVE 915 (1394)
T ss_pred cceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHH
Confidence 11 123568888776421 0112234567888888754 4454 699999999999977
Q ss_pred hh-CCc-EEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCC-chhhHHHHHHHHHHHH-HHHHHhccc
Q 025114 148 MQ-KGI-SVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESG-DAYTEALNRLSTLWEE-RGEAYANAN 209 (257)
Q Consensus 148 l~-~~~-vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~-~~~~~~~~~v~~l~~~-r~~~y~~~~ 209 (257)
+. +|+ +++|||||++| +++++..|.+++.++|+++.. ...+ |++..|.+| +....|++.
T Consensus 916 L~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~---D~vl~L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 916 LVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEF---DRLLLLQKGGQTVYFGDLG 989 (1394)
T ss_pred HHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhc---CEEEEEcCCCEEEEECCcc
Confidence 65 796 99999999998 466666688999999997642 2344 888777776 776666653
No 345
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=6.7e-23 Score=165.60 Aligned_cols=125 Identities=23% Similarity=0.278 Sum_probs=91.4
Q ss_pred ecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC----CceecchhhhhhcCCCCCHHHHHH
Q 025114 31 SGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG----YSFFDCDTLIEQSVDGTSVAEIFK 106 (257)
Q Consensus 31 ~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg----~~~~d~~~~~~~~~~~~~v~e~~~ 106 (257)
++++++.|.++.+++++||++.+ |++++|+|+||||||||+++|+|.+. ..++++..+. ...
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~---g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~-----~~~------ 67 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKA---GEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIA-----KLP------ 67 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcc-----cCC------
Confidence 67899999888899999999999 99999999999999999999999873 2233332110 000
Q ss_pred HhCchHHHHHHHHHHHHhcccCccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCC
Q 025114 107 LYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDS 174 (257)
Q Consensus 107 ~~g~~~~~~~~~~~l~~l~~~~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~ 174 (257)
..+....++.. .+||+|+++++.+++++. +|.+++||||+++| +.++...+.++
T Consensus 68 ----------~~~~~~~i~~~----~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~ti 133 (157)
T cd00267 68 ----------LEELRRRIGYV----PQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTV 133 (157)
T ss_pred ----------HHHHHhceEEE----eeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 00111122222 229999999999998876 79999999999888 23333335678
Q ss_pred ccccCCCCC
Q 025114 175 RPLLHQCES 183 (257)
Q Consensus 175 ~~~~h~~~~ 183 (257)
+.++|+.+.
T Consensus 134 i~~sh~~~~ 142 (157)
T cd00267 134 IIVTHDPEL 142 (157)
T ss_pred EEEeCCHHH
Confidence 888998543
No 346
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.86 E-value=3.8e-22 Score=208.00 Aligned_cols=167 Identities=18% Similarity=0.193 Sum_probs=121.8
Q ss_pred eEEecceeeeeCc---cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCcee-cchhhhh------
Q 025114 28 VLESGNVHAPIDE---AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFF-DCDTLIE------ 93 (257)
Q Consensus 28 ~l~~~~l~~~~~~---~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~-d~~~~~~------ 93 (257)
.|+++||+|.|++ .++|+|+||+|++ |++++|+||||||||||+++|+|++ |.+++ ++.++..
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~---Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~l 458 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTE---GKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWW 458 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcC---CCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHH
Confidence 5999999999975 3699999999999 9999999999999999999999998 55677 4333211
Q ss_pred -h---------cCCCCCHHHHHHHhCc-----------------------------------------------------
Q 025114 94 -Q---------SVDGTSVAEIFKLYGE----------------------------------------------------- 110 (257)
Q Consensus 94 -~---------~~~~~~v~e~~~~~g~----------------------------------------------------- 110 (257)
. ..+..|+.+++.....
T Consensus 459 r~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 538 (1466)
T PTZ00265 459 RSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMR 538 (1466)
T ss_pred HHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcc
Confidence 0 0123477887765210
Q ss_pred ----hHHHHHHHHHHHHhccc--------------CccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH--------
Q 025114 111 ----GFFREKETEVLQKLSLM--------------RQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL-------- 163 (257)
Q Consensus 111 ----~~~~~~~~~~l~~l~~~--------------~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L-------- 163 (257)
....+...++++.+++. ......|||||+||+.+||++. +|++++|||||++|
T Consensus 539 ~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i 618 (1466)
T PTZ00265 539 KNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLV 618 (1466)
T ss_pred cccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH
Confidence 00012233445554432 1456789999999999998876 79999999999998
Q ss_pred ---HHHHHh-cCCCCccccCCCCCCchhhHHHHHHHHHHHHH
Q 025114 164 ---AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTLWEER 201 (257)
Q Consensus 164 ---~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r 201 (257)
++++.. .|.+++.++|+++.+ ..| |++..|.+|+
T Consensus 619 ~~~L~~~~~~~g~TvIiIsHrls~i-~~a---D~Iivl~~g~ 656 (1466)
T PTZ00265 619 QKTINNLKGNENRITIIIAHRLSTI-RYA---NTIFVLSNRE 656 (1466)
T ss_pred HHHHHHHhhcCCCEEEEEeCCHHHH-HhC---CEEEEEeCCc
Confidence 344443 378999999997654 455 7877777653
No 347
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.86 E-value=1.7e-22 Score=201.39 Aligned_cols=177 Identities=21% Similarity=0.191 Sum_probs=133.4
Q ss_pred eEEecceeeeeCc---cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-------
Q 025114 28 VLESGNVHAPIDE---AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------- 93 (257)
Q Consensus 28 ~l~~~~l~~~~~~---~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------- 93 (257)
-++++||+|.|.. .+||+|+||++++ |+.++||||+||||||+..+|-..+ |.+.+|+.++..
T Consensus 987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~---GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR 1063 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRA---GQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLR 1063 (1228)
T ss_pred EEEEeeeEeeCCCCCCchhhcCCcEEecC---CCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHH
Confidence 5999999999964 5699999999999 9999999999999999999999988 667888877521
Q ss_pred ---------hcCCCCCHHHHHHHhCchHHHHHHHHHHHHhccc-------C-------ccccccChhHhHHHHHHHHhh-
Q 025114 94 ---------QSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLM-------R-------QLVVSTGGGAVTRPINWRYMQ- 149 (257)
Q Consensus 94 ---------~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~-------~-------~~v~~lsgG~~qr~~~a~~l~- 149 (257)
...+..|+.|++.........+...++++..+.+ + ..-.+|||||+||.++||++.
T Consensus 1064 ~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilR 1143 (1228)
T KOG0055|consen 1064 KQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILR 1143 (1228)
T ss_pred HhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHc
Confidence 1224778999987753332223333444333321 1 456799999999999998775
Q ss_pred CCcEEEEECCHHHHH-----------HHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 150 KGISVWLDVPLEALA-----------QRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 150 ~~~vl~LDep~~~L~-----------~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
+|++|+|||-|+.|+ .|.. .|.|.+.+.|-+..... | |.|..+.+|++...|+.++.+
T Consensus 1144 nPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLSTIqn-a---D~I~Vi~~G~VvE~GtH~~L~ 1212 (1228)
T KOG0055|consen 1144 NPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLSTIQN-A---DVIAVLKNGKVVEQGTHDELL 1212 (1228)
T ss_pred CCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhhhhc-C---CEEEEEECCEEEecccHHHHH
Confidence 799999999999993 2222 47888999998765433 2 777778888777777766555
No 348
>PLN03130 ABC transporter C family member; Provisional
Probab=99.85 E-value=8.2e-23 Score=214.63 Aligned_cols=178 Identities=18% Similarity=0.137 Sum_probs=135.6
Q ss_pred eEEecceeeeeCc--cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh--------
Q 025114 28 VLESGNVHAPIDE--AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE-------- 93 (257)
Q Consensus 28 ~l~~~~l~~~~~~--~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~-------- 93 (257)
.|+++||+++|.+ .++|+|+||+|++ ||.++|+|++|||||||+++|.+++ |.+++|+.++..
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~---GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~ 1313 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISP---SEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRK 1313 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcC---CCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHh
Confidence 5999999999964 4699999999999 9999999999999999999999998 667888865421
Q ss_pred ------h--cCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC--------------ccccccChhHhHHHHHHHHhh-C
Q 025114 94 ------Q--SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR--------------QLVVSTGGGAVTRPINWRYMQ-K 150 (257)
Q Consensus 94 ------~--~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~--------------~~v~~lsgG~~qr~~~a~~l~-~ 150 (257)
+ ..+.-|+.+++....+ ...+...++++..++.+ ..-..|||||+||..+||++. +
T Consensus 1314 ~IsiVpQdp~LF~GTIreNLd~~~~-~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~ 1392 (1622)
T PLN03130 1314 VLGIIPQAPVLFSGTVRFNLDPFNE-HNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRR 1392 (1622)
T ss_pred ccEEECCCCccccccHHHHhCcCCC-CCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcC
Confidence 1 1124478888765432 22333445555544421 234579999999999998775 7
Q ss_pred CcEEEEECCHHHHH--------HHHHh--cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceec
Q 025114 151 GISVWLDVPLEALA--------QRIAA--VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVS 213 (257)
Q Consensus 151 ~~vl~LDep~~~L~--------~rl~~--~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~ 213 (257)
|++++|||||++++ +.+++ .+.|++.+.|.++.+.. | |++..|.+|++..+|++++.+.
T Consensus 1393 p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~---DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1393 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-C---DRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-C---CEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999882 22322 36899999999876554 3 8888888999998898877764
No 349
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.85 E-value=3.3e-22 Score=162.25 Aligned_cols=182 Identities=16% Similarity=0.195 Sum_probs=134.0
Q ss_pred cceEEecceeeeeCc---------cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh
Q 025114 26 ASVLESGNVHAPIDE---------AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI 92 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~---------~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~ 92 (257)
++.|+++|++|.|.. ..+++.|||++++ |+.++|||.||||||||.|+|+|.+ |.+.+++..+.
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~---~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~ 78 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLRE---GQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLH 78 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecC---CcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCcccc
Confidence 467899999998843 3589999999999 9999999999999999999999988 44555554432
Q ss_pred hhcC-------------------CCCCHHHHHHH-------hCchHHHHHHHHHHHHhcccC----ccccccChhHhHHH
Q 025114 93 EQSV-------------------DGTSVAEIFKL-------YGEGFFREKETEVLQKLSLMR----QLVVSTGGGAVTRP 142 (257)
Q Consensus 93 ~~~~-------------------~~~~v~e~~~~-------~g~~~~~~~~~~~l~~l~~~~----~~v~~lsgG~~qr~ 142 (257)
...+ +...+..++.. .....-.++..+.|+.+|+.+ -.+.-|+-||+||+
T Consensus 79 ~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRV 158 (267)
T COG4167 79 FGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRV 158 (267)
T ss_pred ccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHH
Confidence 1111 01112222211 011112344556788888864 46788999999999
Q ss_pred HHHHHhh-CCcEEEEECCHHHHH-----------HHHHh-cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccc
Q 025114 143 INWRYMQ-KGISVWLDVPLEALA-----------QRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN 209 (257)
Q Consensus 143 ~~a~~l~-~~~vl~LDep~~~L~-----------~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~ 209 (257)
++|++|. +|.+++.||...+|+ -.+.+ .|+..+.+..++......+ |.+..|.+|..+.||.+.
T Consensus 159 aLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~---D~viVM~EG~vvE~G~t~ 235 (267)
T COG4167 159 ALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHIS---DQVLVMHEGEVVERGSTA 235 (267)
T ss_pred HHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhc---ccEEEEecCceeecCChh
Confidence 9998876 899999999998872 22332 4888888888877666665 889999999999999988
Q ss_pred ceec
Q 025114 210 ARVS 213 (257)
Q Consensus 210 ~~~~ 213 (257)
.+++
T Consensus 236 ~v~a 239 (267)
T COG4167 236 DVLA 239 (267)
T ss_pred hhhc
Confidence 8875
No 350
>PLN03232 ABC transporter C family member; Provisional
Probab=99.85 E-value=8.3e-23 Score=213.96 Aligned_cols=178 Identities=15% Similarity=0.102 Sum_probs=135.1
Q ss_pred eEEecceeeeeCc--cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhhh-------
Q 025114 28 VLESGNVHAPIDE--AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIEQ------- 94 (257)
Q Consensus 28 ~l~~~~l~~~~~~--~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~~------- 94 (257)
.|+++||+++|.. .++|+|+||+|++ |+.++|+|++|||||||+++|.|++ |.+.+|+.++..-
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~---GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~ 1310 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSP---SEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRR 1310 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHh
Confidence 5999999999953 5799999999999 9999999999999999999999998 6678888665211
Q ss_pred ---------cCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC--------------ccccccChhHhHHHHHHHHhh-C
Q 025114 95 ---------SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR--------------QLVVSTGGGAVTRPINWRYMQ-K 150 (257)
Q Consensus 95 ---------~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~--------------~~v~~lsgG~~qr~~~a~~l~-~ 150 (257)
..+.-|+.+++.... ....+...++++..++.+ ..-..|||||+||..+||++. +
T Consensus 1311 ~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~ 1389 (1495)
T PLN03232 1311 VLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRR 1389 (1495)
T ss_pred hcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhC
Confidence 112447888876533 222333445555544421 233579999999999998775 7
Q ss_pred CcEEEEECCHHHHH--------HHHHh--cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceec
Q 025114 151 GISVWLDVPLEALA--------QRIAA--VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVS 213 (257)
Q Consensus 151 ~~vl~LDep~~~L~--------~rl~~--~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~ 213 (257)
|++++|||||++++ +.++. .+.|++.+.|.++.+.. | |++..|.+|++..+|++++.+.
T Consensus 1390 ~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~---DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1390 SKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-C---DKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-C---CEEEEEECCEEEEECCHHHHHh
Confidence 99999999999882 22332 36899999999876554 3 8888888999888888877664
No 351
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.85 E-value=2e-21 Score=186.41 Aligned_cols=150 Identities=17% Similarity=0.190 Sum_probs=107.3
Q ss_pred ceEEecceeeeeCcc-----ccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh----
Q 025114 27 SVLESGNVHAPIDEA-----QVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE---- 93 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~-----~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~---- 93 (257)
..|+++||++.|+++ ++|+|+||++++ |++++|+||||||||||+++|+|++ |.+.+++.++.+
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~---G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~ 412 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQ---GDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRD 412 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHH
Confidence 358999999999752 599999999999 9999999999999999999999987 445666544311
Q ss_pred ---hcC---------CCCCHHHHHHHhCchHHHHHHHHHHHHhcccC---------ccccccChhHhHHHHHHHHhh-CC
Q 025114 94 ---QSV---------DGTSVAEIFKLYGEGFFREKETEVLQKLSLMR---------QLVVSTGGGAVTRPINWRYMQ-KG 151 (257)
Q Consensus 94 ---~~~---------~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~---------~~v~~lsgG~~qr~~~a~~l~-~~ 151 (257)
..+ ...++.+.. ......+...++++.+++.+ .....|||||+||.+++|++. +|
T Consensus 413 ~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~ 489 (555)
T TIGR01194 413 DYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDR 489 (555)
T ss_pred HHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCC
Confidence 000 011121111 11112233456777777653 224679999999999998775 79
Q ss_pred cEEEEECCHHHHH--------HHH----HhcCCCCccccCCCC
Q 025114 152 ISVWLDVPLEALA--------QRI----AAVGTDSRPLLHQCE 182 (257)
Q Consensus 152 ~vl~LDep~~~L~--------~rl----~~~g~~~~~~~h~~~ 182 (257)
++++|||||++|+ +.+ ...+.+++.++|+++
T Consensus 490 ~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~ 532 (555)
T TIGR01194 490 PILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ 532 (555)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH
Confidence 9999999999882 222 234788999999854
No 352
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.85 E-value=2.1e-22 Score=195.29 Aligned_cols=167 Identities=22% Similarity=0.210 Sum_probs=125.5
Q ss_pred CccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh-------CCceecchhhhh-----------h---cCC
Q 025114 39 DEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL-------GYSFFDCDTLIE-----------Q---SVD 97 (257)
Q Consensus 39 ~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l-------g~~~~d~~~~~~-----------~---~~~ 97 (257)
+++++|+|+|+++++ |++++|+||||||||||+++|+|.. |.+.+++..+.. + .+.
T Consensus 36 ~~~~iL~~vs~~i~~---Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~ 112 (617)
T TIGR00955 36 PRKHLLKNVSGVAKP---GELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIP 112 (617)
T ss_pred CccccccCCEEEEeC---CeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCc
Confidence 457799999999999 9999999999999999999999976 234555543210 1 123
Q ss_pred CCCHHHHHHHhCc---------hHHHHHHHHHHHHhcccC---cccc------ccChhHhHHHHHHHHhh-CCcEEEEEC
Q 025114 98 GTSVAEIFKLYGE---------GFFREKETEVLQKLSLMR---QLVV------STGGGAVTRPINWRYMQ-KGISVWLDV 158 (257)
Q Consensus 98 ~~~v~e~~~~~g~---------~~~~~~~~~~l~~l~~~~---~~v~------~lsgG~~qr~~~a~~l~-~~~vl~LDe 158 (257)
..|+.|.+..... ...+++..++++.+++.+ ..+. .+||||++|+.+++.+. +|.+++|||
T Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDE 192 (617)
T TIGR00955 113 TLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDE 192 (617)
T ss_pred cCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeC
Confidence 5688887754211 112334567888888754 3343 59999999999997775 799999999
Q ss_pred CHHHH-----------HHHHHhcCCCCccccCCCC-CCchhhHHHHHHHHHHHHHHHHHhcccce
Q 025114 159 PLEAL-----------AQRIAAVGTDSRPLLHQCE-SGDAYTEALNRLSTLWEERGEAYANANAR 211 (257)
Q Consensus 159 p~~~L-----------~~rl~~~g~~~~~~~h~~~-~~~~~~~~~~~v~~l~~~r~~~y~~~~~~ 211 (257)
|+++| +++++..|.+++.++|++. .+..++ |++..|.+|+...+|++++.
T Consensus 193 PtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~---D~i~ll~~G~~v~~G~~~~~ 254 (617)
T TIGR00955 193 PTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELF---DKIILMAEGRVAYLGSPDQA 254 (617)
T ss_pred CCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHh---ceEEEeeCCeEEEECCHHHH
Confidence 99999 4666656889999999975 345555 89888888888877776554
No 353
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.85 E-value=2.5e-22 Score=183.15 Aligned_cols=178 Identities=19% Similarity=0.218 Sum_probs=122.3
Q ss_pred ceEEecceeeeeC-ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhhh-------
Q 025114 27 SVLESGNVHAPID-EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIEQ------- 94 (257)
Q Consensus 27 ~~l~~~~l~~~~~-~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~~------- 94 (257)
--++++||+|.|+ ++++|+||||++.+ |+.++|+||+|+||||++|+|..+. |.+.+|+.++...
T Consensus 536 G~i~fsnvtF~Y~p~k~vl~disF~v~p---GktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs 612 (790)
T KOG0056|consen 536 GKIEFSNVTFAYDPGKPVLSDISFTVQP---GKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRS 612 (790)
T ss_pred CeEEEEEeEEecCCCCceeecceEEecC---CcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHH
Confidence 3589999999996 58899999999999 9999999999999999999999987 7788888876321
Q ss_pred cC---------CCCCHHHHHHHhCchHHH------HHHHHHHHH-hcccC-------ccccccChhHhHHHHHHHHh-hC
Q 025114 95 SV---------DGTSVAEIFKLYGEGFFR------EKETEVLQK-LSLMR-------QLVVSTGGGAVTRPINWRYM-QK 150 (257)
Q Consensus 95 ~~---------~~~~v~e~~~~~g~~~~~------~~~~~~l~~-l~~~~-------~~v~~lsgG~~qr~~~a~~l-~~ 150 (257)
.. +.-|+..+++......-. .++..+-++ ++..+ ..-..||||++||+++|+.+ +.
T Consensus 613 ~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~ 692 (790)
T KOG0056|consen 613 SIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKA 692 (790)
T ss_pred hcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcC
Confidence 11 112222222221110001 111122222 22211 45667999999999999766 47
Q ss_pred CcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 151 GISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 151 ~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
|.+++|||.|+.| +.|+.. +.|.+.+.|-+..+-.- |.+..+.+|++...|..++.+
T Consensus 693 P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLSTivnA----D~ILvi~~G~IvErG~HeeLl 760 (790)
T KOG0056|consen 693 PSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLSTIVNA----DLILVISNGRIVERGRHEELL 760 (790)
T ss_pred CcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehheecc----cEEEEEeCCeEeecCcHHHHH
Confidence 9999999999999 355543 56777888886654321 666667777776666655555
No 354
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.85 E-value=2.1e-21 Score=185.90 Aligned_cols=163 Identities=18% Similarity=0.186 Sum_probs=111.8
Q ss_pred eEEecceeeeeCc-cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-------hc
Q 025114 28 VLESGNVHAPIDE-AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE-------QS 95 (257)
Q Consensus 28 ~l~~~~l~~~~~~-~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~-------~~ 95 (257)
.++++||++.|++ .++|+|+||++++ |+.++|+||||||||||+++|+|++ |.+.+++.++.+ ..
T Consensus 322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~---G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 398 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSVGPINLTIKR---GELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKL 398 (547)
T ss_pred eEEEEEEEEEeCCCCeEEecceEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhh
Confidence 5999999999965 5699999999999 9999999999999999999999988 445666544321 00
Q ss_pred C---------CCCCHHHHHHHhCchHHHHHHHHHHHHhcccCc--------cccccChhHhHHHHHHHHhh-CCcEEEEE
Q 025114 96 V---------DGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQ--------LVVSTGGGAVTRPINWRYMQ-KGISVWLD 157 (257)
Q Consensus 96 ~---------~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~--------~v~~lsgG~~qr~~~a~~l~-~~~vl~LD 157 (257)
. ...++.+. +.....+...++++.+++... .-..|||||+||..+||++. +|++++||
T Consensus 399 i~~v~q~~~lf~~ti~~n----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililD 474 (547)
T PRK10522 399 FSAVFTDFHLFDQLLGPE----GKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLD 474 (547)
T ss_pred eEEEecChhHHHHhhccc----cCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 0 01111111 111122334556777766431 13579999999999998876 79999999
Q ss_pred CCHHHHH--------HHHH----hcCCCCccccCCCCCCchhhHHHHHHHHHHHHH
Q 025114 158 VPLEALA--------QRIA----AVGTDSRPLLHQCESGDAYTEALNRLSTLWEER 201 (257)
Q Consensus 158 ep~~~L~--------~rl~----~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r 201 (257)
|||++|+ +.+. ..+.+++.++|+++. ...| |++..+.+|+
T Consensus 475 E~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~-~~~~---d~i~~l~~G~ 526 (547)
T PRK10522 475 EWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHY-FIHA---DRLLEMRNGQ 526 (547)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHH-HHhC---CEEEEEECCE
Confidence 9999882 2222 236789999998532 2223 5554444443
No 355
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.85 E-value=3.1e-20 Score=177.20 Aligned_cols=165 Identities=30% Similarity=0.491 Sum_probs=141.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccCccccccCh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGG 136 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~~lsg 136 (257)
-..++|||++||||||++|.||..+|++|+|.|..+++.. |+++.++|+..|+..||+.|.++++.+......|+++||
T Consensus 6 ~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~-g~si~eif~~~Ge~~FR~~E~~~l~~~~~~~~~VIs~GG 84 (542)
T PRK14021 6 RPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREI-GMSIPSYFEEYGEPAFREVEADVVADMLEDFDGIFSLGG 84 (542)
T ss_pred CccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHH-CcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEECCC
Confidence 3579999999999999999999999999999999999998 999999999999999999999999887555577999999
Q ss_pred hHhHHHHHHHHh----h-CCcEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhc-ccc
Q 025114 137 GAVTRPINWRYM----Q-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN-ANA 210 (257)
Q Consensus 137 G~~qr~~~a~~l----~-~~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~-~~~ 210 (257)
|.+.+..+++.| + ++.++||+.|.+.+.+|+.. ...||++.. +. .+++..+++.|.+.|.. ++.
T Consensus 85 G~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~--~~~RPll~~-~~-------~~~~~~l~~~R~~~Y~~~Ad~ 154 (542)
T PRK14021 85 GAPMTPSTQHALASYIAHGGRVVYLDADPKEAMERANR--GGGRPMLNG-DA-------NKRWKKLFKQRDPVFRQVANV 154 (542)
T ss_pred chhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhC--CCCCCCCCC-Cc-------HHHHHHHHHHHHHHHHhhCCE
Confidence 999988888754 4 47899999999999999974 356887754 11 26788999999999998 555
Q ss_pred eecchhhhhhccccCCCCCCHHHHHHHHHHHHHh
Q 025114 211 RVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEG 244 (257)
Q Consensus 211 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~ 244 (257)
.+ +++..++++++.+|++.+..
T Consensus 155 ~i------------~~~~~~~~~~~~~i~~~~~~ 176 (542)
T PRK14021 155 HV------------HTRGLTPQAAAKKLIDMVAE 176 (542)
T ss_pred EE------------ECCCCCHHHHHHHHHHHHHh
Confidence 55 57789999999999888864
No 356
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.84 E-value=2e-22 Score=211.39 Aligned_cols=178 Identities=17% Similarity=0.116 Sum_probs=130.8
Q ss_pred ceEEecceeeeeCc--cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-------
Q 025114 27 SVLESGNVHAPIDE--AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------- 93 (257)
Q Consensus 27 ~~l~~~~l~~~~~~--~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------- 93 (257)
..|+++||+++|.+ ..+|+|+||+|++ |+.++|+|++|||||||+++|.+++ |.+.+|+.++..
T Consensus 1283 g~I~f~nVsf~Y~~~~~~vL~~is~~I~~---GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR 1359 (1522)
T TIGR00957 1283 GRVEFRNYCLRYREDLDLVLRHINVTIHG---GEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLR 1359 (1522)
T ss_pred CcEEEEEEEEEeCCCCcccccceeEEEcC---CCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHH
Confidence 35999999999965 4699999999999 9999999999999999999999987 667888866421
Q ss_pred -------h--cCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC--------------ccccccChhHhHHHHHHHHhh-
Q 025114 94 -------Q--SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR--------------QLVVSTGGGAVTRPINWRYMQ- 149 (257)
Q Consensus 94 -------~--~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~--------------~~v~~lsgG~~qr~~~a~~l~- 149 (257)
+ ..+.-|+.+++..++. ...+...++++..++.+ ..-..|||||+|+..+||++.
T Consensus 1360 ~~i~iVpQdp~LF~gTIr~NLdp~~~-~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr 1438 (1522)
T TIGR00957 1360 FKITIIPQDPVLFSGSLRMNLDPFSQ-YSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLR 1438 (1522)
T ss_pred hcCeEECCCCcccCccHHHHcCcccC-CCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHc
Confidence 1 1124478888764432 22233445555544321 223569999999999998775
Q ss_pred CCcEEEEECCHHHHH--------HHHHh--cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 150 KGISVWLDVPLEALA--------QRIAA--VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 150 ~~~vl~LDep~~~L~--------~rl~~--~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
+|++++|||||++++ +.++. .+.|++.+.|.++.+..+ |++..|.+|++..+|++++.+
T Consensus 1439 ~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~----DrIlVld~G~IvE~G~~~eLl 1507 (1522)
T TIGR00957 1439 KTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDY----TRVIVLDKGEVAEFGAPSNLL 1507 (1522)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhC----CEEEEEECCEEEEECCHHHHH
Confidence 799999999999882 33332 367999999997665432 787777777776666665544
No 357
>PLN03140 ABC transporter G family member; Provisional
Probab=99.84 E-value=8.7e-22 Score=204.79 Aligned_cols=175 Identities=18% Similarity=0.127 Sum_probs=128.1
Q ss_pred eEEecceeeeeC-------------ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh------CCceecc
Q 025114 28 VLESGNVHAPID-------------EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL------GYSFFDC 88 (257)
Q Consensus 28 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l------g~~~~d~ 88 (257)
.+.++||++... ++.+|+|||+++++ |++++|+||||||||||+++|+|.. |.+.+++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~---Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG 943 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRP---GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG 943 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEEC---CeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECC
Confidence 588999987752 34799999999999 9999999999999999999999976 3344544
Q ss_pred hhhh-----------hh---cCCCCCHHHHHHHhC-----c----hHHHHHHHHHHHHhcccC---ccc-----cccChh
Q 025114 89 DTLI-----------EQ---SVDGTSVAEIFKLYG-----E----GFFREKETEVLQKLSLMR---QLV-----VSTGGG 137 (257)
Q Consensus 89 ~~~~-----------~~---~~~~~~v~e~~~~~g-----~----~~~~~~~~~~l~~l~~~~---~~v-----~~lsgG 137 (257)
.+.. .+ .....|+.|.+.... . ....+...++++.+++.+ ..+ ..||||
T Consensus 944 ~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgG 1023 (1470)
T PLN03140 944 FPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTE 1023 (1470)
T ss_pred ccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHH
Confidence 3211 01 123568888765421 0 111234567888888754 333 579999
Q ss_pred HhHHHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCC-CchhhHHHHHHHHHHH-HHHH
Q 025114 138 AVTRPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCES-GDAYTEALNRLSTLWE-ERGE 203 (257)
Q Consensus 138 ~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~-~~~~~~~~~~v~~l~~-~r~~ 203 (257)
|+||+.+++.|. +|.+++|||||++| ++++++.|.+++.++|+++. +...+ |++..|.+ |+..
T Consensus 1024 erkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~---D~vllL~~gG~~v 1100 (1470)
T PLN03140 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF---DELLLMKRGGQVI 1100 (1470)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhC---CEEEEEcCCCEEE
Confidence 999999997775 89999999999998 46666668899999999763 44454 78777765 6666
Q ss_pred HHhcc
Q 025114 204 AYANA 208 (257)
Q Consensus 204 ~y~~~ 208 (257)
..|++
T Consensus 1101 ~~G~~ 1105 (1470)
T PLN03140 1101 YSGPL 1105 (1470)
T ss_pred EECCc
Confidence 55654
No 358
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=2e-20 Score=150.26 Aligned_cols=151 Identities=24% Similarity=0.291 Sum_probs=106.0
Q ss_pred ceEEecceeeee-----Cc--cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhhh-
Q 025114 27 SVLESGNVHAPI-----DE--AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIEQ- 94 (257)
Q Consensus 27 ~~l~~~~l~~~~-----~~--~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~~- 94 (257)
..|.++|++|.| ++ -++|+++||+++. ||+++|-||+|+|||||+|+|.+-+ |.+++......-.
T Consensus 3 ~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~a---GECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl 79 (235)
T COG4778 3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNA---GECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDL 79 (235)
T ss_pred ceeeeecchhheEeeecCCEEeeeeeceeEEecC---ccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhh
Confidence 358899999988 23 4699999999999 9999999999999999999999866 2333322110000
Q ss_pred ------------------------cCCCCCHHHHHH----HhCc--hHHHHHHHHHHHHhcccC----ccccccChhHhH
Q 025114 95 ------------------------SVDGTSVAEIFK----LYGE--GFFREKETEVLQKLSLMR----QLVVSTGGGAVT 140 (257)
Q Consensus 95 ------------------------~~~~~~v~e~~~----~~g~--~~~~~~~~~~l~~l~~~~----~~v~~lsgG~~q 140 (257)
..+..+..+++. ..|. ...+.+...+|.++.+.+ -.+..+|||++|
T Consensus 80 ~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQ 159 (235)
T COG4778 80 VTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQ 159 (235)
T ss_pred hccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchhe
Confidence 001111111111 1121 123455667888888866 457889999999
Q ss_pred HHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCC
Q 025114 141 RPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQ 180 (257)
Q Consensus 141 r~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~ 180 (257)
|+.|++-+. +-.+++|||||+.| ++.-+.+|..++-+.||
T Consensus 160 RVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHD 211 (235)
T COG4778 160 RVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD 211 (235)
T ss_pred ehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeecc
Confidence 999997765 77789999999998 33334568888889998
No 359
>PTZ00243 ABC transporter; Provisional
Probab=99.84 E-value=2.8e-22 Score=210.19 Aligned_cols=177 Identities=15% Similarity=0.085 Sum_probs=132.8
Q ss_pred eEEecceeeeeCc--cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh--------
Q 025114 28 VLESGNVHAPIDE--AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE-------- 93 (257)
Q Consensus 28 ~l~~~~l~~~~~~--~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~-------- 93 (257)
.|+++||+++|.+ ..+|+||||+|++ |+.++|+|++|||||||+++|.|++ |.+++|+.++..
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~---GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~ 1384 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAP---REKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRR 1384 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHh
Confidence 5999999999965 4599999999999 9999999999999999999999998 667888866521
Q ss_pred ------h--cCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC--------------ccccccChhHhHHHHHHHHhh-C
Q 025114 94 ------Q--SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR--------------QLVVSTGGGAVTRPINWRYMQ-K 150 (257)
Q Consensus 94 ------~--~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~--------------~~v~~lsgG~~qr~~~a~~l~-~ 150 (257)
+ ..+.-|+.+++...++ ...+...++++..++.+ ..-..|||||+|+..+||++. +
T Consensus 1385 ~I~iVpQdp~LF~gTIreNIdp~~~-~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~ 1463 (1560)
T PTZ00243 1385 QFSMIPQDPVLFDGTVRQNVDPFLE-ASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKK 1463 (1560)
T ss_pred cceEECCCCccccccHHHHhCcccC-CCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcC
Confidence 1 1124488888754332 22344456666655432 223569999999999998875 4
Q ss_pred -CcEEEEECCHHHHH--------HHHHh--cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 151 -GISVWLDVPLEALA--------QRIAA--VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 151 -~~vl~LDep~~~L~--------~rl~~--~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
|++++|||||++++ +.+.. .+.|++.+.|.++.+.. | |+|..|.+|++..+|++++.+
T Consensus 1464 ~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~---DrIlVLd~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243 1464 GSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQ-Y---DKIIVMDHGAVAEMGSPRELV 1532 (1560)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHh-C---CEEEEEECCEEEEECCHHHHH
Confidence 79999999999872 22222 36799999999765543 3 888788888887777776665
No 360
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.84 E-value=8.7e-21 Score=149.30 Aligned_cols=108 Identities=35% Similarity=0.440 Sum_probs=81.3
Q ss_pred ccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-------h----------cCCCCCHH
Q 025114 44 LKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE-------Q----------SVDGTSVA 102 (257)
Q Consensus 44 l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~-------~----------~~~~~~v~ 102 (257)
|+|+||+|++ |++++|+|+||||||||+++|+|.. |.+.+++.++.. . .+.+.++.
T Consensus 1 L~~v~~~i~~---g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKP---GEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEET---TSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcC---CCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6899999999 9999999999999999999999987 445555543321 0 01233344
Q ss_pred HHHHHhCchHHHHHHHHHHHHhcccC---ccc----cccChhHhHHHHHHHHhh-CCcEEEEECCHH
Q 025114 103 EIFKLYGEGFFREKETEVLQKLSLMR---QLV----VSTGGGAVTRPINWRYMQ-KGISVWLDVPLE 161 (257)
Q Consensus 103 e~~~~~g~~~~~~~~~~~l~~l~~~~---~~v----~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~ 161 (257)
+. .......++++.+++.+ +.+ ..||+|++||+.+++++. +|.+++||||++
T Consensus 78 ~~-------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 78 EN-------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HH-------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cc-------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 33 22344566777777643 445 999999999999998776 799999999985
No 361
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.84 E-value=3.8e-20 Score=149.94 Aligned_cols=156 Identities=40% Similarity=0.557 Sum_probs=129.7
Q ss_pred CCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccCccccccChhHhHHHHHH
Q 025114 66 MGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPINW 145 (257)
Q Consensus 66 nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~~lsgG~~qr~~~a 145 (257)
+||||||+++.||..+|++|+|.|..++... |+++.++|...|+..||+.+.+++..+...+..|+++|||........
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~-g~si~~i~~~~G~~~fr~~E~~~l~~l~~~~~~VIa~GGG~~~~~~~~ 79 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERT-GMSISEIFAEEGEEAFRELESEALRELLKENNCVIACGGGIVLKEENR 79 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHH-TSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEE-TTGGGSHHHH
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHh-CCcHHHHHHcCChHHHHHHHHHHHHHHhccCcEEEeCCCCCcCcHHHH
Confidence 6999999999999999999999999999998 999999999999999999999999988877789999999999999999
Q ss_pred HHhh-CCcEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecchhhhhhcccc
Q 025114 146 RYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHK 224 (257)
Q Consensus 146 ~~l~-~~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~~l~~~~~~~ 224 (257)
.+|. .+.++||+.|.+.+.+|+...+. ||+.++... ...+..++..|.+.|...+..+ +
T Consensus 80 ~~L~~~g~vI~L~~~~~~l~~Rl~~~~~--Rp~l~~~~~-------~~~~~~~~~~R~~~Y~~~a~~~-----------v 139 (158)
T PF01202_consen 80 ELLKENGLVIYLDADPEELAERLRARDN--RPLLKGKME-------HEEILELLFEREPLYEQAADIV-----------V 139 (158)
T ss_dssp HHHHHHSEEEEEE--HHHHHHHHHHHCT--SGGTCSHHH-------HHHHHHHHHHHHHHHHHHSSEE-----------E
T ss_pred HHHHhCCEEEEEeCCHHHHHHHHhCCCC--CCCCCCCCh-------HHHHHHHHHHHHHHHHhcCeEE-----------E
Confidence 8888 68999999999999999986543 888876211 0233345558999999866554 2
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 025114 225 DVSSLTPVTIAIEALEQI 242 (257)
Q Consensus 225 ~~~~~~~~~~~~~i~~~i 242 (257)
+++..++++++.+|++.|
T Consensus 140 ~~~~~~~~~i~~~i~~~l 157 (158)
T PF01202_consen 140 DTDGSPPEEIAEEILEFL 157 (158)
T ss_dssp ETSSCHHHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHh
Confidence 566677799999998876
No 362
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.84 E-value=8.5e-22 Score=168.59 Aligned_cols=153 Identities=19% Similarity=0.207 Sum_probs=96.4
Q ss_pred eeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHH-HHHHhhhCCc-----------------eecchh-h-----
Q 025114 36 APIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVG-KILSGVLGYS-----------------FFDCDT-L----- 91 (257)
Q Consensus 36 ~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLl-k~Lag~lg~~-----------------~~d~~~-~----- 91 (257)
+...+..+|+++||+|++ ||+++|+|+||||||||+ ..+.. .|.+ +...+. +
T Consensus 3 ~~~~~~~~l~~vsl~i~~---Ge~~~l~G~sGsGKSTL~~~~i~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (226)
T cd03270 3 VRGAREHNLKNVDVDIPR---NKLVVITGVSGSGKSSLAFDTIYA-EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSP 78 (226)
T ss_pred eccchhhccccceeecCC---CcEEEEEcCCCCCHHHHHHHHHHH-HHHHHHhhcccchhhhhhcccCccccccccCCCc
Confidence 344567799999999999 999999999999999996 33321 1100 000000 0
Q ss_pred ---hhhc----CCCCCHH---HHHHHh----CchHHHHHHHHHHHHhccc----CccccccChhHhHHHHHHHHhh-CC-
Q 025114 92 ---IEQS----VDGTSVA---EIFKLY----GEGFFREKETEVLQKLSLM----RQLVVSTGGGAVTRPINWRYMQ-KG- 151 (257)
Q Consensus 92 ---~~~~----~~~~~v~---e~~~~~----g~~~~~~~~~~~l~~l~~~----~~~v~~lsgG~~qr~~~a~~l~-~~- 151 (257)
..+. ....++. +.+... ......+ ..++++.+++. ++.+.+||||++||+.+++++. +|
T Consensus 79 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 157 (226)
T cd03270 79 AIAIDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRE-RLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLT 157 (226)
T ss_pred eEEecCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCC
Confidence 0000 0111222 111111 1111112 24577888764 3688999999999999998886 56
Q ss_pred -cEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHH
Q 025114 152 -ISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTL 197 (257)
Q Consensus 152 -~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l 197 (257)
++++||||+++| +++++..|.++++++|+++.+ .+| |++..|
T Consensus 158 ~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~-~~~---d~i~~l 211 (226)
T cd03270 158 GVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTI-RAA---DHVIDI 211 (226)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHH-HhC---CEEEEe
Confidence 599999999887 455555688999999996543 344 555444
No 363
>PRK00625 shikimate kinase; Provisional
Probab=99.84 E-value=2.5e-19 Score=147.17 Aligned_cols=164 Identities=27% Similarity=0.406 Sum_probs=136.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCC----CHHHHHHHhCchHHHHHHHHHHHHhcccCcccccc
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGT----SVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVST 134 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~----~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~~l 134 (257)
.|.|+|++||||||+++.|+..++++++|.|.+++... +. ++.++|+..|+..|++.+.++++.+.. ...+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~-g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~-~~~VIs~ 79 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNY-HGALYSSPKEIYQAYGEEGFCREEFLALTSLPV-IPSIVAL 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHh-CCCCCCCHHHHHHHHCHHHHHHHHHHHHHHhcc-CCeEEEC
Confidence 58999999999999999999999999999999998877 55 899999999999999999999988764 5678999
Q ss_pred ChhHhHHHHHHHHhh-CCcEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhc-cccee
Q 025114 135 GGGAVTRPINWRYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN-ANARV 212 (257)
Q Consensus 135 sgG~~qr~~~a~~l~-~~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~-~~~~~ 212 (257)
|||......+...+. .+.++|||.|.+.+.+|+..+ +...+.+. .+.+..+++.|.+.|.. ++.++
T Consensus 80 GGg~~~~~e~~~~l~~~~~Vv~L~~~~e~l~~Rl~~R-----~~~~~~~~-------~~~~~~ll~~R~~~Y~~~ad~~i 147 (173)
T PRK00625 80 GGGTLMIEPSYAHIRNRGLLVLLSLPIATIYQRLQKR-----GLPERLKH-------APSLEEILSQRIDRMRSIADYIF 147 (173)
T ss_pred CCCccCCHHHHHHHhcCCEEEEEECCHHHHHHHHhcC-----CCCcccCc-------HHHHHHHHHHHHHHHHHHCCEEE
Confidence 999999888888886 578999999999999999853 33322111 15677889999999987 67777
Q ss_pred cchhhhhhccccCCCCCCHHHHHHHHHHHH
Q 025114 213 SLENIAVKLGHKDVSSLTPVTIAIEALEQI 242 (257)
Q Consensus 213 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i 242 (257)
+.+++ ++++..+.-++++.++..+
T Consensus 148 ~~~~~------~~~~~~~~~~~~~~~~~~~ 171 (173)
T PRK00625 148 SLDHV------AETSSESLMRACQSFCTLL 171 (173)
T ss_pred eCCCc------ccCCCCCHHHHHHHHHHHh
Confidence 66543 4678888999998887665
No 364
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.84 E-value=1.4e-20 Score=181.78 Aligned_cols=180 Identities=24% Similarity=0.272 Sum_probs=135.8
Q ss_pred eEEecceeeeeC-----ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC-------Cceecchhhhh--
Q 025114 28 VLESGNVHAPID-----EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG-------YSFFDCDTLIE-- 93 (257)
Q Consensus 28 ~l~~~~l~~~~~-----~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg-------~~~~d~~~~~~-- 93 (257)
-+.+++++.... .+++|++||.++++ ||+++|+||+|||||||+++|+|... .+.+++.....
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~---Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~ 101 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKP---GELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRS 101 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEEec---CeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhh
Confidence 466777766663 36799999999999 99999999999999999999999772 34555522111
Q ss_pred ------------hcCCCCCHHHHHHHhC---------chHHHHHHHHHHHHhcccC---ccc-----cccChhHhHHHHH
Q 025114 94 ------------QSVDGTSVAEIFKLYG---------EGFFREKETEVLQKLSLMR---QLV-----VSTGGGAVTRPIN 144 (257)
Q Consensus 94 ------------~~~~~~~v~e~~~~~g---------~~~~~~~~~~~l~~l~~~~---~~v-----~~lsgG~~qr~~~ 144 (257)
..++..||.|.+.... ....+++++++++.+++.+ ..+ ..+||||++|+.+
T Consensus 102 ~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsi 181 (613)
T KOG0061|consen 102 FRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSI 181 (613)
T ss_pred hhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHH
Confidence 1134668888654421 2344567788999999864 333 3599999999999
Q ss_pred H-HHhhCCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 145 W-RYMQKGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 145 a-~~l~~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
+ .++.+|.+++|||||++| ++++++.|.+++...|+... +..+.+|++..|.+|+....|+++..+
T Consensus 182 a~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss--~lf~lFD~l~lLs~G~~vy~G~~~~~~ 259 (613)
T KOG0061|consen 182 ALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSS--ELFELFDKLLLLSEGEVVYSGSPRELL 259 (613)
T ss_pred HHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcH--HHHHHHhHhhhhcCCcEEEecCHHHHH
Confidence 9 666799999999999998 58888789999999999542 333456999888889887778775443
No 365
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.83 E-value=5.1e-22 Score=207.85 Aligned_cols=178 Identities=19% Similarity=0.152 Sum_probs=134.3
Q ss_pred ceEEecceeeeeCc--cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---CCceecchhhhh--------
Q 025114 27 SVLESGNVHAPIDE--AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---GYSFFDCDTLIE-------- 93 (257)
Q Consensus 27 ~~l~~~~l~~~~~~--~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---g~~~~d~~~~~~-------- 93 (257)
..|+++||+++|.. ..+|+|+||+|++ |+.++|+|++|||||||+++|.|++ |.+++|+.++..
T Consensus 1216 g~I~f~nVs~~Y~~~~~~vL~~is~~I~~---GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~ 1292 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEAGRAVLQDLSFSVEG---GQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRK 1292 (1490)
T ss_pred CeEEEEEEEEEeCCCCcceeeccEEEEcC---CCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHh
Confidence 35999999999964 6799999999999 9999999999999999999999987 667777765421
Q ss_pred ------h--cCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC--------------ccccccChhHhHHHHHHHHhh-C
Q 025114 94 ------Q--SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR--------------QLVVSTGGGAVTRPINWRYMQ-K 150 (257)
Q Consensus 94 ------~--~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~--------------~~v~~lsgG~~qr~~~a~~l~-~ 150 (257)
+ ..+.-|+.+++...+. .-.+...++|+.+++.+ ..-..|||||+|+..+||++. +
T Consensus 1293 ~is~IpQdp~LF~GTIR~NLdp~~~-~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~ 1371 (1490)
T TIGR01271 1293 AFGVIPQKVFIFSGTFRKNLDPYEQ-WSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSK 1371 (1490)
T ss_pred ceEEEeCCCccCccCHHHHhCcccC-CCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCC
Confidence 1 1124478888754332 22344456666665532 112369999999999998775 7
Q ss_pred CcEEEEECCHHHHH--------HHHHh--cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 151 GISVWLDVPLEALA--------QRIAA--VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 151 ~~vl~LDep~~~L~--------~rl~~--~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
+++++|||||++++ +.++. .+.|++.++|.++.+.. | |++..|.+|++..+|++.+.+
T Consensus 1372 ~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-~---DrIlvL~~G~ivE~g~p~~Ll 1439 (1490)
T TIGR01271 1372 AKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE-C---QQFLVIEGSSVKQYDSIQKLL 1439 (1490)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-C---CEEEEEECCEEEEeCCHHHHH
Confidence 99999999999882 33332 36799999999766544 3 888888888888888877665
No 366
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=2.1e-20 Score=171.44 Aligned_cols=173 Identities=19% Similarity=0.136 Sum_probs=122.4
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh--CCce---ecchhhhhh---cCCCC
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL--GYSF---FDCDTLIEQ---SVDGT 99 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l--g~~~---~d~~~~~~~---~~~~~ 99 (257)
-|.+.+++..||++.+|++-++++.. |..++|+|+||+|||||+|+|+.-- +.+. +.+++.... .....
T Consensus 80 Di~~~~fdLa~G~k~LL~~a~L~L~~---GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~ 156 (582)
T KOG0062|consen 80 DIHIDNFDLAYGGKILLNKANLTLSR---GRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDT 156 (582)
T ss_pred ceeeeeeeeeecchhhhcCCceeeec---ccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccH
Confidence 47888999999999999999999999 9999999999999999999999721 1111 112211100 00122
Q ss_pred CHHHHHHHhCch----HHHHHHHHHHHHhcccC----ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHHH------
Q 025114 100 SVAEIFKLYGEG----FFREKETEVLQKLSLMR----QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEALA------ 164 (257)
Q Consensus 100 ~v~e~~~~~g~~----~~~~~~~~~l~~l~~~~----~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L~------ 164 (257)
...+++....+- ...+....+|..+|..+ +++.++|||.+.|.++|+++- +|++++|||||+.|+
T Consensus 157 ~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~W 236 (582)
T KOG0062|consen 157 ERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAW 236 (582)
T ss_pred HHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHH
Confidence 233333221110 01111223777888765 889999999999999998775 899999999999982
Q ss_pred --HHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHh
Q 025114 165 --QRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYA 206 (257)
Q Consensus 165 --~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~ 206 (257)
.-|.....|++.++||-+.....| .-|+.+.+.++..|.
T Consensus 237 Le~yL~t~~~T~liVSHDr~FLn~V~---tdIIH~~~~kL~~Yk 277 (582)
T KOG0062|consen 237 LENYLQTWKITSLIVSHDRNFLNTVC---TDIIHLENLKLDYYK 277 (582)
T ss_pred HHHHHhhCCceEEEEeccHHHHHHHH---HHHHHHhhhhhhhhc
Confidence 344445679999999966666666 667777777777774
No 367
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.83 E-value=3.5e-22 Score=179.71 Aligned_cols=148 Identities=22% Similarity=0.251 Sum_probs=108.1
Q ss_pred EEcCCCChHHHHHHHHHhhh----CCceecchhhhh------------h---cCCCCCHHHHHHHh----Cc--hHHHHH
Q 025114 62 LVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------------Q---SVDGTSVAEIFKLY----GE--GFFREK 116 (257)
Q Consensus 62 LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------------~---~~~~~~v~e~~~~~----g~--~~~~~~ 116 (257)
|+||||||||||+|+|+|++ |.+++++.++.. + .+..+++.+++... +. ....++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 68999999999999999987 445665543210 1 12356888877542 11 112234
Q ss_pred HHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCC
Q 025114 117 ETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQ 180 (257)
Q Consensus 117 ~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~ 180 (257)
..++++.+++.+ +.+..|||||+||+.+++++. +|++++||||+++| ++++.+. |.+++.++|+
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd 160 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 567788888754 789999999999999998886 79999999999998 3444433 7899999999
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 181 CESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 181 ~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
++++..+| |++..|.+|++...++++++.
T Consensus 161 ~~e~~~~~---d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 161 QEEAMTMS---DRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred HHHHHHhC---CEEEEEECCEEEEEcCHHHHH
Confidence 87777777 788777777766555554443
No 368
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.82 E-value=3e-21 Score=200.83 Aligned_cols=166 Identities=19% Similarity=0.194 Sum_probs=121.4
Q ss_pred ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh--------CCceecchhhhh----------------hc
Q 025114 40 EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL--------GYSFFDCDTLIE----------------QS 95 (257)
Q Consensus 40 ~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l--------g~~~~d~~~~~~----------------~~ 95 (257)
.+++|+|+|+++++ |++++|+||||||||||+|+|+|.+ |.+.+++.++.+ ..
T Consensus 73 ~~~iL~~vs~~i~~---Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~ 149 (1394)
T TIGR00956 73 TFDILKPMDGLIKP---GELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVH 149 (1394)
T ss_pred cceeeeCCEEEEEC---CEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEecccccc
Confidence 36699999999999 9999999999999999999999975 345666543211 01
Q ss_pred CCCCCHHHHHHHhCc-------------hHHHHH-HHHHHHHhcccC---c-----cccccChhHhHHHHHHHHhh-CCc
Q 025114 96 VDGTSVAEIFKLYGE-------------GFFREK-ETEVLQKLSLMR---Q-----LVVSTGGGAVTRPINWRYMQ-KGI 152 (257)
Q Consensus 96 ~~~~~v~e~~~~~g~-------------~~~~~~-~~~~l~~l~~~~---~-----~v~~lsgG~~qr~~~a~~l~-~~~ 152 (257)
+..+|+.|.+..... ....++ ..++++.+++.+ . .+..+||||+||+.+++++. +|.
T Consensus 150 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~ 229 (1394)
T TIGR00956 150 FPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAK 229 (1394)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCC
Confidence 235688887654210 111122 245788888864 2 35679999999999997775 899
Q ss_pred EEEEECCHHHH-----------HHHHHhc-CCCCccccCCC-CCCchhhHHHHHHHHHHHHHHHHHhcccce
Q 025114 153 SVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQC-ESGDAYTEALNRLSTLWEERGEAYANANAR 211 (257)
Q Consensus 153 vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~-~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~ 211 (257)
+++|||||++| ++++++. |.+++.++|+. +.+..++ |++..|.+|+...+|+++++
T Consensus 230 vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~---D~v~~L~~G~iv~~G~~~~~ 298 (1394)
T TIGR00956 230 IQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELF---DKVIVLYEGYQIYFGPADKA 298 (1394)
T ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhh---ceEEEEeCCeEEEECCHHHH
Confidence 99999999998 4666654 78899999995 3455554 88888888887666665433
No 369
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.81 E-value=1.4e-20 Score=188.73 Aligned_cols=186 Identities=20% Similarity=0.252 Sum_probs=146.3
Q ss_pred cceEEecceeeeeCccc-cccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-------
Q 025114 26 ASVLESGNVHAPIDEAQ-VLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------- 93 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~-~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------- 93 (257)
...+.++|++|.|+.+. +++++|+.|++ ||+.+++|+|||||||++|+|.|.. |..++.+.++..
T Consensus 562 ~~~~~~~~L~k~y~~~~~Av~~ls~~V~~---gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~ 638 (885)
T KOG0059|consen 562 SSALVLNNLSKVYGGKDGAVRGLSFAVPP---GECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQV 638 (885)
T ss_pred cceEEEcceeeeecchhhhhcceEEEecC---CceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhh
Confidence 35789999999999877 99999999999 9999999999999999999999987 445554443311
Q ss_pred -----------hcCCCCCHHHHHHHhC------chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCc
Q 025114 94 -----------QSVDGTSVAEIFKLYG------EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGI 152 (257)
Q Consensus 94 -----------~~~~~~~v~e~~~~~g------~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~ 152 (257)
.....+|..|.+..++ +..+.+..+.+++.+++.+ +++..+|||++.|...+.++. +|.
T Consensus 639 ~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~ 718 (885)
T KOG0059|consen 639 RKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPS 718 (885)
T ss_pred hhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCC
Confidence 1112345556554432 1234455677888888865 779999999999999996554 899
Q ss_pred EEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecchhhhhhc
Q 025114 153 SVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKL 221 (257)
Q Consensus 153 vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~~l~~~~ 221 (257)
+++||||++++ ++++++.|..++..+|.++++...| +|+..|.+|+....|++ +++...|
T Consensus 719 vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLC---tR~aImv~G~l~ciGs~------q~LKsrf 789 (885)
T KOG0059|consen 719 VILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALC---TRTAIMVIGQLRCIGSP------QELKSRY 789 (885)
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHh---hhhheeecCeeEEecCh------HHHHhhc
Confidence 99999999988 5677666668889999999999999 99999999998876654 4566777
Q ss_pred cc
Q 025114 222 GH 223 (257)
Q Consensus 222 ~~ 223 (257)
|.
T Consensus 790 G~ 791 (885)
T KOG0059|consen 790 GS 791 (885)
T ss_pred CC
Confidence 73
No 370
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.81 E-value=8.7e-21 Score=199.12 Aligned_cols=175 Identities=15% Similarity=0.153 Sum_probs=121.6
Q ss_pred eEEecceeeeeCc--cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchh-hhhh--cCCC
Q 025114 28 VLESGNVHAPIDE--AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDT-LIEQ--SVDG 98 (257)
Q Consensus 28 ~l~~~~l~~~~~~--~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~-~~~~--~~~~ 98 (257)
.++++|+++.|++ +++|+|+||++++ |++++|+||||||||||+++|+|.+ |...+++.- +..+ ....
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~---G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~ 712 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPE---GALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQN 712 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccC
Confidence 6999999999974 5799999999999 9999999999999999999999987 334444321 1111 1225
Q ss_pred CCHHHHHHHhCchHHHHHHHHHH------HHhccc--------CccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH
Q 025114 99 TSVAEIFKLYGEGFFREKETEVL------QKLSLM--------RQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL 163 (257)
Q Consensus 99 ~~v~e~~~~~g~~~~~~~~~~~l------~~l~~~--------~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L 163 (257)
.|+.+++..... ...+...+++ +.+... ......|||||+||+.+||++. +|++++||||+++|
T Consensus 713 ~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saL 791 (1522)
T TIGR00957 713 DSLRENILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAV 791 (1522)
T ss_pred CcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCcccc
Confidence 688888765321 1111111122 222221 1457789999999999998876 79999999999998
Q ss_pred H--------HHHH-----hcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccc
Q 025114 164 A--------QRIA-----AVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANA 210 (257)
Q Consensus 164 ~--------~rl~-----~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~ 210 (257)
+ +.+. ..+.+++.++|+++.... | |++..|.+|++...|+.++
T Consensus 792 D~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~---D~ii~l~~G~i~~~g~~~~ 847 (1522)
T TIGR00957 792 DAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-V---DVIIVMSGGKISEMGSYQE 847 (1522)
T ss_pred CHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-C---CEEEEecCCeEEeeCCHHH
Confidence 2 3332 135788999999765432 4 7776676666655554433
No 371
>PLN03232 ABC transporter C family member; Provisional
Probab=99.80 E-value=7.3e-21 Score=199.42 Aligned_cols=173 Identities=20% Similarity=0.154 Sum_probs=118.5
Q ss_pred eEEecceeeeeCc---cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCc-----eecch-hhhhh--cC
Q 025114 28 VLESGNVHAPIDE---AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYS-----FFDCD-TLIEQ--SV 96 (257)
Q Consensus 28 ~l~~~~l~~~~~~---~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~-----~~d~~-~~~~~--~~ 96 (257)
.++++|+++.|+. +++|+|+||+|++ |+.++|+||+|||||||+++|.|.+.+. .+.+. .+..+ ..
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~---Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~L 690 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPV---GSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWI 690 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcC---CCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCcccc
Confidence 5999999999964 5799999999999 9999999999999999999999987321 00000 01111 11
Q ss_pred CCCCHHHHHHHhCchHHHHHHHHHHHHhcccC--------------ccccccChhHhHHHHHHHHhh-CCcEEEEECCHH
Q 025114 97 DGTSVAEIFKLYGEGFFREKETEVLQKLSLMR--------------QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLE 161 (257)
Q Consensus 97 ~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~--------------~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~ 161 (257)
..-|+.|++.... ....++..++++..++.+ ..-..|||||+||.++||++- +|++++||||++
T Consensus 691 f~gTIreNI~fg~-~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptS 769 (1495)
T PLN03232 691 FNATVRENILFGS-DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLS 769 (1495)
T ss_pred ccccHHHHhhcCC-ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 3568898887543 222333334444433311 334579999999999998875 799999999999
Q ss_pred HHH--------HHH-Hh--cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcc
Q 025114 162 ALA--------QRI-AA--VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANA 208 (257)
Q Consensus 162 ~L~--------~rl-~~--~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~ 208 (257)
+|+ +++ .. .+.|++.++|+++.. ..+ |++..|.+|++...|+.
T Consensus 770 aLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l-~~a---D~Ii~L~~G~i~~~Gt~ 823 (1495)
T PLN03232 770 ALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFL-PLM---DRIILVSEGMIKEEGTF 823 (1495)
T ss_pred ccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhH-HhC---CEEEEEeCCEEEEecCH
Confidence 984 221 11 367889999996542 233 66656655555444443
No 372
>PRK13946 shikimate kinase; Provisional
Probab=99.80 E-value=3.8e-18 Score=141.55 Aligned_cols=172 Identities=40% Similarity=0.636 Sum_probs=140.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccCccccccCh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGG 136 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~~lsg 136 (257)
...|+|+|++||||||+++.|+..+|++|+|.|...+... +.++.+++..+|+.+|++.+.+++..+......|.+++|
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~-g~~~~e~~~~~ge~~~~~~e~~~l~~l~~~~~~Vi~~gg 88 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAA-RMTIAEIFAAYGEPEFRDLERRVIARLLKGGPLVLATGG 88 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh-CCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCeEEECCC
Confidence 5689999999999999999999999999999999888777 889999999999999998888888877655577889998
Q ss_pred hHhHHHHHHHHhh-CCcEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecch
Q 025114 137 GAVTRPINWRYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLE 215 (257)
Q Consensus 137 G~~qr~~~a~~l~-~~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~ 215 (257)
|..........+. ++.++||+.|.+.+.+|+..+ ..+|++...+ . .+.+..++..|.+.|..++.++
T Consensus 89 g~~~~~~~r~~l~~~~~~v~L~a~~e~~~~Rl~~r--~~rp~~~~~~-~------~~~i~~~~~~R~~~y~~~dl~i--- 156 (184)
T PRK13946 89 GAFMNEETRAAIAEKGISVWLKADLDVLWERVSRR--DTRPLLRTAD-P------KETLARLMEERYPVYAEADLTV--- 156 (184)
T ss_pred CCcCCHHHHHHHHcCCEEEEEECCHHHHHHHhcCC--CCCCcCCCCC-h------HHHHHHHHHHHHHHHHhCCEEE---
Confidence 8777777777775 688999999999999999854 3455543311 1 2556677888888887766554
Q ss_pred hhhhhccccCCCCCCHHHHHHHHHHHHHhhhcccc
Q 025114 216 NIAVKLGHKDVSSLTPVTIAIEALEQIEGFLKEED 250 (257)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 250 (257)
+++..+++++++.|+..+..+.++++
T Consensus 157 ---------~~~~~~~~~~~~~i~~~i~~~~~~~~ 182 (184)
T PRK13946 157 ---------ASRDVPKEVMADEVIEALAAYLEKEE 182 (184)
T ss_pred ---------ECCCCCHHHHHHHHHHHHHHhhcccc
Confidence 56789999999999999998877653
No 373
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.80 E-value=5.6e-20 Score=169.49 Aligned_cols=156 Identities=19% Similarity=0.162 Sum_probs=112.1
Q ss_pred CcceEEecceeeeeCcc-ccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCc----ee---------cchh
Q 025114 25 SASVLESGNVHAPIDEA-QVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYS----FF---------DCDT 90 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~~-~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~----~~---------d~~~ 90 (257)
..|++-+.|++|.|.+. .++++++|-|.. +..+++|||||||||||+|++.|.+.+. .. ....
T Consensus 386 p~pvi~~~nv~F~y~~~~~iy~~l~fgid~---~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~ 462 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNPMIYKKLNFGIDL---DSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHL 462 (614)
T ss_pred CCCeEEEeccccCCCCcchhhhhhhcccCc---ccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhh
Confidence 45799999999999865 699999999999 9999999999999999999999988321 11 1110
Q ss_pred hhhhcCCCCCHHHHHH-HhCchHHHHHHHHHHHHhcccC----ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-
Q 025114 91 LIEQSVDGTSVAEIFK-LYGEGFFREKETEVLQKLSLMR----QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL- 163 (257)
Q Consensus 91 ~~~~~~~~~~v~e~~~-~~g~~~~~~~~~~~l~~l~~~~----~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L- 163 (257)
-....+ ..+..+++. .+....-.+..+.++.++|+.. .++.+||+|++.|+..++++. +|.+++|||||++|
T Consensus 463 ~e~ldl-~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLD 541 (614)
T KOG0927|consen 463 AEQLDL-DKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLD 541 (614)
T ss_pred HhhcCc-chhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCC
Confidence 011111 223333322 2221122234467888999873 789999999999999997775 79999999999998
Q ss_pred ---H----HHHHhcCCCCccccCCCCCC
Q 025114 164 ---A----QRIAAVGTDSRPLLHQCESG 184 (257)
Q Consensus 164 ---~----~rl~~~g~~~~~~~h~~~~~ 184 (257)
+ ..+.....+++.++||.-.+
T Consensus 542 i~tid~laeaiNe~~Ggvv~vSHDfrlI 569 (614)
T KOG0927|consen 542 IETIDALAEAINEFPGGVVLVSHDFRLI 569 (614)
T ss_pred chhHHHHHHHHhccCCceeeeechhhHH
Confidence 2 33443445788899994333
No 374
>PLN03130 ABC transporter C family member; Provisional
Probab=99.79 E-value=1.3e-20 Score=198.25 Aligned_cols=172 Identities=19% Similarity=0.165 Sum_probs=117.7
Q ss_pred eEEecceeeeeCc---cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCC-----ceecchh-hhhh--cC
Q 025114 28 VLESGNVHAPIDE---AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGY-----SFFDCDT-LIEQ--SV 96 (257)
Q Consensus 28 ~l~~~~l~~~~~~---~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~-----~~~d~~~-~~~~--~~ 96 (257)
.++++|+++.|+. +++|+|+||+|++ |+.++|+||+|||||||+++|.|.+.+ +.+.+.- +..+ ..
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~---Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~L 690 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPV---GSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWI 690 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecC---CCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCcccc
Confidence 5999999999964 5799999999999 999999999999999999999998732 2111110 1111 12
Q ss_pred CCCCHHHHHHHhCchHHHHHHHHHHHHhccc---------C-----ccccccChhHhHHHHHHHHhh-CCcEEEEECCHH
Q 025114 97 DGTSVAEIFKLYGEGFFREKETEVLQKLSLM---------R-----QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLE 161 (257)
Q Consensus 97 ~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~---------~-----~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~ 161 (257)
..-|+.+++..... +..++..++++..++. . ..-..|||||+||+++||++- ++++++||||++
T Consensus 691 fngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptS 769 (1622)
T PLN03130 691 FNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLS 769 (1622)
T ss_pred CCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 35689998875332 2233333444433321 1 345579999999999998875 799999999999
Q ss_pred HHHHH---------HHh--cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhc
Q 025114 162 ALAQR---------IAA--VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN 207 (257)
Q Consensus 162 ~L~~r---------l~~--~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~ 207 (257)
+|+.. +.. .+.|++.++|+++.. ..+ |++..|.+|++...|+
T Consensus 770 ALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l-~~a---D~Ii~L~~G~i~e~Gt 822 (1622)
T PLN03130 770 ALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFL-SQV---DRIILVHEGMIKEEGT 822 (1622)
T ss_pred ccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHH-HhC---CEEEEEeCCEEEEeCC
Confidence 98421 111 367899999996432 223 6665555555444443
No 375
>PLN03140 ABC transporter G family member; Provisional
Probab=99.79 E-value=1.1e-20 Score=196.62 Aligned_cols=170 Identities=22% Similarity=0.172 Sum_probs=122.7
Q ss_pred eeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC-------Cceecchhhhh--------------
Q 025114 35 HAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG-------YSFFDCDTLIE-------------- 93 (257)
Q Consensus 35 ~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg-------~~~~d~~~~~~-------------- 93 (257)
++.+ ++++|+|+|+.+++ |++++|+||||||||||+|+|+|.+. .+.+++.++.+
T Consensus 173 ~k~~-~~~IL~~vs~~i~~---Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d 248 (1470)
T PLN03140 173 AKKT-KLTILKDASGIIKP---SRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQND 248 (1470)
T ss_pred CCCc-cceeccCCeEEEeC---CeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccc
Confidence 3443 46799999999999 99999999999999999999999873 33555543211
Q ss_pred hcCCCCCHHHHHHHhCc------------hH-HHH---------------------------HHHHHHHHhcccC-----
Q 025114 94 QSVDGTSVAEIFKLYGE------------GF-FRE---------------------------KETEVLQKLSLMR----- 128 (257)
Q Consensus 94 ~~~~~~~v~e~~~~~g~------------~~-~~~---------------------------~~~~~l~~l~~~~----- 128 (257)
..+..+|+.|.+..... .. .++ ...++++.+++.+
T Consensus 249 ~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~ 328 (1470)
T PLN03140 249 VHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTI 328 (1470)
T ss_pred cCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCce
Confidence 11235688887654210 00 000 1245778888853
Q ss_pred ---ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHh-cCCCCccccCCC-CCCchhhHHH
Q 025114 129 ---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAA-VGTDSRPLLHQC-ESGDAYTEAL 191 (257)
Q Consensus 129 ---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~-~g~~~~~~~h~~-~~~~~~~~~~ 191 (257)
..+..+||||+||+.+++++. +|.++++|||+++| +++++. .|.+++.++|+. +++..++
T Consensus 329 vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lf--- 405 (1470)
T PLN03140 329 VGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLF--- 405 (1470)
T ss_pred eCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHh---
Confidence 356789999999999997776 79999999999998 456654 478899999985 3455555
Q ss_pred HHHHHHHHHHHHHHhcccce
Q 025114 192 NRLSTLWEERGEAYANANAR 211 (257)
Q Consensus 192 ~~v~~l~~~r~~~y~~~~~~ 211 (257)
|++..|.+|++..+|+++++
T Consensus 406 D~vilL~~G~ivy~G~~~~~ 425 (1470)
T PLN03140 406 DDIILLSEGQIVYQGPRDHI 425 (1470)
T ss_pred heEEEeeCceEEEeCCHHHH
Confidence 89988888888776765544
No 376
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.78 E-value=3e-19 Score=164.77 Aligned_cols=180 Identities=18% Similarity=0.191 Sum_probs=123.7
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhh-cCC---CCCH
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQ-SVD---GTSV 101 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~-~~~---~~~v 101 (257)
..-+.+.|+++.|.++.+++|+.|++.+ |+.++|||+|||||||+|++|++..-+.-...+.+... .+. ...+
T Consensus 73 s~dvk~~sls~s~~g~~l~kd~~~El~~---g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av 149 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHGVELIKDVTLELNR---GRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAV 149 (614)
T ss_pred cccceeeeeeeccCCceeeeeeeEEecC---CceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHH
Confidence 3469999999999999999999999999 99999999999999999999999763321111111000 000 0000
Q ss_pred HHH------------------------------------HHHhCchHHHHHHHHHHHHhcccC----ccccccChhHhHH
Q 025114 102 AEI------------------------------------FKLYGEGFFREKETEVLQKLSLMR----QLVVSTGGGAVTR 141 (257)
Q Consensus 102 ~e~------------------------------------~~~~g~~~~~~~~~~~l~~l~~~~----~~v~~lsgG~~qr 141 (257)
... ....+...+..+...+|..++... +.+..+|||++.|
T Consensus 150 ~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR 229 (614)
T KOG0927|consen 150 QAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMR 229 (614)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHH
Confidence 000 001111122233445566666543 8899999999999
Q ss_pred HHHHHHhh-CCcEEEEECCHHHHH--------HHHHhcCC-CCccccCCCCCCchhhHHHHHHHHHHHHHHHHHh-cccc
Q 025114 142 PINWRYMQ-KGISVWLDVPLEALA--------QRIAAVGT-DSRPLLHQCESGDAYTEALNRLSTLWEERGEAYA-NANA 210 (257)
Q Consensus 142 ~~~a~~l~-~~~vl~LDep~~~L~--------~rl~~~g~-~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~-~~~~ 210 (257)
+++|++|. +|.+++|||||++|+ .-|+.... +.+.++|.=+....+| ..|+.+.++....|+ +.+.
T Consensus 230 ~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vC---T~Ii~l~~kkl~~y~Gnydq 306 (614)
T KOG0927|consen 230 AALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVC---TNIIHLDNKKLIYYEGNYDQ 306 (614)
T ss_pred HHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHh---hhhheecccceeeecCCHHH
Confidence 99998775 799999999999982 34444433 5777889866777788 888888888866664 4443
Q ss_pred e
Q 025114 211 R 211 (257)
Q Consensus 211 ~ 211 (257)
.
T Consensus 307 y 307 (614)
T KOG0927|consen 307 Y 307 (614)
T ss_pred H
Confidence 3
No 377
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.77 E-value=5.7e-20 Score=192.60 Aligned_cols=161 Identities=18% Similarity=0.155 Sum_probs=106.4
Q ss_pred cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchh-hhhhc--CCCCCHHHHHHHhCc---
Q 025114 41 AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDT-LIEQS--VDGTSVAEIFKLYGE--- 110 (257)
Q Consensus 41 ~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~-~~~~~--~~~~~v~e~~~~~g~--- 110 (257)
+++|+|+||+|++ |++++|+||||||||||+++|+|.+ |.+.+++.- +..+. ....|+.+++.....
T Consensus 439 ~~~l~~i~l~i~~---G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~ 515 (1490)
T TIGR01271 439 TPVLKNISFKLEK---GQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDE 515 (1490)
T ss_pred CcceeeeEEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccch
Confidence 4689999999999 9999999999999999999999987 444454421 11111 124488888764221
Q ss_pred hHHHHHHH-----HHHHHhccc-----CccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHHH--------HH-HH--
Q 025114 111 GFFREKET-----EVLQKLSLM-----RQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEALA--------QR-IA-- 168 (257)
Q Consensus 111 ~~~~~~~~-----~~l~~l~~~-----~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L~--------~r-l~-- 168 (257)
..+++... +.++.+... ......|||||+||+.+|+++. +|++++||||+++|+ ++ +.
T Consensus 516 ~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~ 595 (1490)
T TIGR01271 516 YRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKL 595 (1490)
T ss_pred HHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 11111111 112222111 1346789999999999998886 799999999999982 22 11
Q ss_pred hcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcc
Q 025114 169 AVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANA 208 (257)
Q Consensus 169 ~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~ 208 (257)
..+.+++.++|+++... .| |++..|.+|++...|+.
T Consensus 596 ~~~~tvilvtH~~~~~~-~a---d~ii~l~~g~i~~~g~~ 631 (1490)
T TIGR01271 596 MSNKTRILVTSKLEHLK-KA---DKILLLHEGVCYFYGTF 631 (1490)
T ss_pred hcCCeEEEEeCChHHHH-hC---CEEEEEECCEEEEEcCH
Confidence 13779999999976543 34 66656655554444443
No 378
>PRK13947 shikimate kinase; Provisional
Probab=99.77 E-value=3.4e-17 Score=133.73 Aligned_cols=160 Identities=37% Similarity=0.565 Sum_probs=128.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccCccccccChhH
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGA 138 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~~lsgG~ 138 (257)
.|+|+|++||||||+++.|+..+|++++|.|..++... |.++.+++...++..|++.+.++++.+.-....+.+++||.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~-g~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~~vi~~g~g~ 81 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMT-GMTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLVIATGGGV 81 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhc-CCcHHHHHHHhChHHHHHHHHHHHHHHhhcCCeEEECCCCC
Confidence 58999999999999999999999999999999988876 99999999999999999988888888754446777888887
Q ss_pred hHHHHHHHHhh-CCcEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecchhh
Q 025114 139 VTRPINWRYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENI 217 (257)
Q Consensus 139 ~qr~~~a~~l~-~~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~~l 217 (257)
.........+. .+.+++|+.|.+.+.+|+...+ .+|.... ... .+++..++..|...|..++.++
T Consensus 82 vl~~~~~~~l~~~~~vv~L~~~~~~l~~Rl~~r~--~rp~~~~----~~~---~~~i~~~~~~r~~~y~~ad~~I----- 147 (171)
T PRK13947 82 VLNPENVVQLRKNGVVICLKARPEVILRRVGKKK--SRPLLMV----GDP---EERIKELLKEREPFYDFADYTI----- 147 (171)
T ss_pred cCCHHHHHHHHhCCEEEEEECCHHHHHHHhcCCC--CCCCCCC----CCh---HHHHHHHHHHHHHHHHhcCEEE-----
Confidence 76666666665 4679999999999999997542 3444322 111 2667778888888887666555
Q ss_pred hhhccccCCCCCCHHHHHHHHHH
Q 025114 218 AVKLGHKDVSSLTPVTIAIEALE 240 (257)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~i~~ 240 (257)
+++..+++++++.|..
T Consensus 148 -------dt~~~~~~~i~~~I~~ 163 (171)
T PRK13947 148 -------DTGDMTIDEVAEEIIK 163 (171)
T ss_pred -------ECCCCCHHHHHHHHHH
Confidence 5778999999998776
No 379
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=3e-18 Score=154.97 Aligned_cols=193 Identities=21% Similarity=0.170 Sum_probs=132.3
Q ss_pred CCcceEEecceeeee-CccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCc-------------eecch
Q 025114 24 LSASVLESGNVHAPI-DEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYS-------------FFDCD 89 (257)
Q Consensus 24 ~~~~~l~~~~l~~~~-~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~-------------~~d~~ 89 (257)
.+.|+|-+++|+|.| +.++.+.+++|-|.- ...|+|+||||.|||||+++|.|.+.+. |+|..
T Consensus 582 L~PPvLGlH~VtFgy~gqkpLFkkldFGiDm---dSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh 658 (807)
T KOG0066|consen 582 LNPPVLGLHDVTFGYPGQKPLFKKLDFGIDM---DSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQH 658 (807)
T ss_pred CCCCeeecccccccCCCCCchhhcccccccc---cceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhh
Confidence 356799999999999 668899999999998 8899999999999999999999988431 33322
Q ss_pred hhhhhcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC----ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-
Q 025114 90 TLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR----QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL- 163 (257)
Q Consensus 90 ~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~----~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L- 163 (257)
. -+......|..++++..-. ......+..|-.+|+.. -.+..||||++.|++++.+.. .|++++|||||.+|
T Consensus 659 ~-~E~L~~Eetp~EyLqr~FN-lpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLD 736 (807)
T KOG0066|consen 659 A-NEALNGEETPVEYLQRKFN-LPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLD 736 (807)
T ss_pred h-HHhhccccCHHHHHHHhcC-CChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcc
Confidence 1 1222223455555543211 11234456677777753 457789999999999997654 79999999999887
Q ss_pred -------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccc-ceecchhhhhhccccCCCCCCHHHHH
Q 025114 164 -------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN-ARVSLENIAVKLGHKDVSSLTPVTIA 235 (257)
Q Consensus 164 -------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (257)
.+.+......+++++|| .|+ +..-.+. .++..+ .++..+.+.++--
T Consensus 737 IESIDALaEAIney~GgVi~VsHD-----------eRL--------i~eT~C~LwVvE~Q-------~i~eIdGdFeDYk 790 (807)
T KOG0066|consen 737 IESIDALAEAINEYNGGVIMVSHD-----------ERL--------IVETDCNLWVVENQ-------GIDEIDGDFEDYK 790 (807)
T ss_pred hhhHHHHHHHHHhccCcEEEEecc-----------cce--------eeecCceEEEEccC-------ChhhccccHHHHH
Confidence 24444455578999999 222 1111111 222221 2344557888888
Q ss_pred HHHHHHHHhhhc
Q 025114 236 IEALEQIEGFLK 247 (257)
Q Consensus 236 ~~i~~~i~~~~~ 247 (257)
.+++..+.+.+-
T Consensus 791 kEVLdaLGEv~v 802 (807)
T KOG0066|consen 791 KEVLDALGEVLV 802 (807)
T ss_pred HHHHHHHHHHhh
Confidence 888888877654
No 380
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.76 E-value=5.2e-17 Score=132.39 Aligned_cols=170 Identities=41% Similarity=0.677 Sum_probs=134.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccCccccccC
Q 025114 56 SGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTG 135 (257)
Q Consensus 56 ~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~~ls 135 (257)
++..+.|+|++||||||+++.|+..+|..+++.|.+.+... +.++.+++...|...+++.+.+++..+......+...+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~-g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~g 81 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARA-GKSIPEIFEEEGEAAFRELEEEVLAELLARHNLVISTG 81 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHc-CCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCCEEEeC
Confidence 37899999999999999999999999999999999888777 88998888888888888888888887765555677778
Q ss_pred hhHhHHHHHHHHhh-CCcEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhc-ccceec
Q 025114 136 GGAVTRPINWRYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN-ANARVS 213 (257)
Q Consensus 136 gG~~qr~~~a~~l~-~~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~-~~~~~~ 213 (257)
||..........+. +..+++|+.|.+.+.+|+..... ++.... + . ..+.+..++..+...|.. ++.++
T Consensus 82 ~~~~~~~~~r~~l~~~~~~v~l~~~~~~~~~R~~~~~~--r~~~~~-~---~---~~~~~~~~~~~~~~~~~~~~dl~i- 151 (175)
T PRK00131 82 GGAVLREENRALLRERGTVVYLDASFEELLRRLRRDRN--RPLLQT-N---D---PKEKLRDLYEERDPLYEEVADITV- 151 (175)
T ss_pred CCEeecHHHHHHHHhCCEEEEEECCHHHHHHHhcCCCC--CCcCCC-C---C---hHHHHHHHHHHHHHHHHhhcCeEE-
Confidence 77766666666663 67889999999999999976431 443331 0 0 125566778888777766 55444
Q ss_pred chhhhhhccccCCCCCCHHHHHHHHHHHHHhhhc
Q 025114 214 LENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLK 247 (257)
Q Consensus 214 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 247 (257)
+++..+++++++.|.+.++.+++
T Consensus 152 -----------dt~~~~~~e~~~~I~~~v~~~~~ 174 (175)
T PRK00131 152 -----------ETDGRSPEEVVNEILEKLEAAWR 174 (175)
T ss_pred -----------eCCCCCHHHHHHHHHHHHHhhcc
Confidence 68889999999999999998876
No 381
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.76 E-value=2.5e-19 Score=156.07 Aligned_cols=139 Identities=21% Similarity=0.224 Sum_probs=93.8
Q ss_pred cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHH-----hhh--------------C------Cceecchhhhhh-
Q 025114 41 AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILS-----GVL--------------G------YSFFDCDTLIEQ- 94 (257)
Q Consensus 41 ~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~La-----g~l--------------g------~~~~d~~~~~~~- 94 (257)
...|+|+|++|+. |.+++|+|++|||||||++.+. ..+ | ..++|+..+...
T Consensus 8 ~~nl~~v~~~ip~---g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~ 84 (261)
T cd03271 8 ENNLKNIDVDIPL---GVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTP 84 (261)
T ss_pred hhcCCCceeeccC---CcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCC
Confidence 3569999999999 9999999999999999998662 111 1 123333222100
Q ss_pred ----------------------------------cCC--------CCCHHHHHHHhCchHHHHHHHHHHHHhcccC----
Q 025114 95 ----------------------------------SVD--------GTSVAEIFKLYGEGFFREKETEVLQKLSLMR---- 128 (257)
Q Consensus 95 ----------------------------------~~~--------~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~---- 128 (257)
.+. .+++.+.+..+....-..+..++++.+++.+
T Consensus 85 rs~~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~ 164 (261)
T cd03271 85 RSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLG 164 (261)
T ss_pred CCcHHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhc
Confidence 011 2233333222211000123346778888753
Q ss_pred ccccccChhHhHHHHHHHHhh-C---CcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCC
Q 025114 129 QLVVSTGGGAVTRPINWRYMQ-K---GISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCE 182 (257)
Q Consensus 129 ~~v~~lsgG~~qr~~~a~~l~-~---~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~ 182 (257)
+.+..||||++||+.+++++. + |.+++||||+++| ++++.+.|.+++.++|+++
T Consensus 165 ~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~ 233 (261)
T cd03271 165 QPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD 233 (261)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 778999999999999998876 3 6899999999998 4555556889999999954
No 382
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=4.9e-19 Score=159.31 Aligned_cols=177 Identities=19% Similarity=0.174 Sum_probs=122.7
Q ss_pred eEEecceeeeeC-ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhhh-------c
Q 025114 28 VLESGNVHAPID-EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIEQ-------S 95 (257)
Q Consensus 28 ~l~~~~l~~~~~-~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~~-------~ 95 (257)
.+.+++|+|.|+ .+++|+++||++++ |+.++++|++|+||||++++|-..+ |.+.+|+.++.+. .
T Consensus 262 ~v~F~~V~F~y~~~r~iL~~isf~i~~---g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~a 338 (497)
T COG5265 262 AVAFINVSFAYDPRRPILNGISFTIPL---GKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRA 338 (497)
T ss_pred eEEEEEEEeeccccchhhcCccccccC---ccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHH
Confidence 477899999996 47899999999999 9999999999999999999999988 6778888776321 1
Q ss_pred C---------CCCCHHHHHHHhCchHHHHHHH---------HHHHHhccc-----CccccccChhHhHHHHHHHHh-hCC
Q 025114 96 V---------DGTSVAEIFKLYGEGFFREKET---------EVLQKLSLM-----RQLVVSTGGGAVTRPINWRYM-QKG 151 (257)
Q Consensus 96 ~---------~~~~v~e~~~~~g~~~~~~~~~---------~~l~~l~~~-----~~~v~~lsgG~~qr~~~a~~l-~~~ 151 (257)
. +.-++..+.+..+...-.+... ..++.+-.. ...-.-+|||++||+++|+.+ ++|
T Consensus 339 Ig~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p 418 (497)
T COG5265 339 IGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNP 418 (497)
T ss_pred hCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCC
Confidence 1 1223333333333222111111 122222111 144567999999999999766 579
Q ss_pred cEEEEECCHHHHH-----------HHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 152 ISVWLDVPLEALA-----------QRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 152 ~vl~LDep~~~L~-----------~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
.+++|||.|+.|+ +++. .|.|...+.|-+..+..- |++..|.+|++...|+.++.+
T Consensus 419 ~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlsti~~a----deiivl~~g~i~erg~h~~ll 485 (497)
T COG5265 419 PILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLSTIIDA----DEIIVLDNGRIVERGTHEELL 485 (497)
T ss_pred CEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhhccCC----ceEEEeeCCEEEecCcHHHHH
Confidence 9999999999993 2222 467888888886654332 677788888777666655444
No 383
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.74 E-value=1.6e-16 Score=141.97 Aligned_cols=175 Identities=34% Similarity=0.555 Sum_probs=140.7
Q ss_pred eEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcc-c
Q 025114 49 QEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSL-M 127 (257)
Q Consensus 49 l~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~-~ 127 (257)
-.+++ +..|+|+|++||||||+++.|+..+|++++|.|..++... |+++.+++...|+..|++.+.+++..+.. .
T Consensus 128 ~~~~~---~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~-G~~i~ei~~~~G~~~fr~~e~~~l~~ll~~~ 203 (309)
T PRK08154 128 RRAAR---RRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREA-GLSVSEIFALYGQEGYRRLERRALERLIAEH 203 (309)
T ss_pred hhccC---CCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHh-CCCHHHHHHHHCHHHHHHHHHHHHHHHHhhC
Confidence 34556 8999999999999999999999999999999999888887 99999999999999999988888877543 2
Q ss_pred CccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHh
Q 025114 128 RQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYA 206 (257)
Q Consensus 128 ~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~ 206 (257)
...|.+++||..........+. +..++||+.|.+.+.+|+..++ ..+|...+.. ..+.+..+++.|.+.|.
T Consensus 204 ~~~VI~~Ggg~v~~~~~~~~l~~~~~~V~L~a~~e~~~~Rl~~r~-~~rp~~~~~~-------~~e~i~~~~~~R~~~y~ 275 (309)
T PRK08154 204 EEMVLATGGGIVSEPATFDLLLSHCYTVWLKASPEEHMARVRAQG-DLRPMADNRE-------AMEDLRRILASREPLYA 275 (309)
T ss_pred CCEEEECCCchhCCHHHHHHHHhCCEEEEEECCHHHHHHHHhcCC-CCCCCCCCCC-------hHHHHHHHHHHHHHHHH
Confidence 3578888998877766665454 6789999999999999997643 3455443211 12567788899999998
Q ss_pred cccceecchhhhhhccccCCCCCCHHHHHHHHHHHHHhhhc
Q 025114 207 NANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLK 247 (257)
Q Consensus 207 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 247 (257)
.++.++ +++..+++++++.|...+..++.
T Consensus 276 ~ad~~I------------~t~~~s~ee~~~~I~~~l~~~~~ 304 (309)
T PRK08154 276 RADAVV------------DTSGLTVAQSLARLRELVRPALG 304 (309)
T ss_pred hCCEEE------------ECCCCCHHHHHHHHHHHHHHHhc
Confidence 766555 57778999999999999987765
No 384
>PTZ00243 ABC transporter; Provisional
Probab=99.73 E-value=4.6e-19 Score=186.18 Aligned_cols=164 Identities=21% Similarity=0.212 Sum_probs=107.7
Q ss_pred eeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC----Cceecchh-hhhh--cCCCCCHHHHHHHhC
Q 025114 37 PIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG----YSFFDCDT-LIEQ--SVDGTSVAEIFKLYG 109 (257)
Q Consensus 37 ~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg----~~~~d~~~-~~~~--~~~~~~v~e~~~~~g 109 (257)
.++++.+|+|+||+|++ |++++|+||||||||||+++|+|.+. .+++...- +..+ .....|+.+++....
T Consensus 669 ~~~~~~iL~~isl~i~~---G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~ 745 (1560)
T PTZ00243 669 ELEPKVLLRDVSVSVPR---GKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFD 745 (1560)
T ss_pred ccCCceeEeeeEEEECC---CCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCC
Confidence 34567799999999999 99999999999999999999999873 22221110 0011 112458888876533
Q ss_pred ch---HHHHH-----HHHHHHHh--ccc---CccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHHHH--------HH
Q 025114 110 EG---FFREK-----ETEVLQKL--SLM---RQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEALAQ--------RI 167 (257)
Q Consensus 110 ~~---~~~~~-----~~~~l~~l--~~~---~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L~~--------rl 167 (257)
.. .+.+. ..+.++.+ ++. .+....|||||+||+.+|+++. +|++++||||+++|+. .+
T Consensus 746 ~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~ 825 (1560)
T PTZ00243 746 EEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEEC 825 (1560)
T ss_pred hhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHH
Confidence 21 11111 01223333 222 2668899999999999998886 7999999999999831 11
Q ss_pred ---HhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhc
Q 025114 168 ---AAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN 207 (257)
Q Consensus 168 ---~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~ 207 (257)
...|.+++.++|+++.. .+| |++..|.+|++...|+
T Consensus 826 ~~~~~~~~TvIlvTH~~~~~-~~a---d~ii~l~~G~i~~~G~ 864 (1560)
T PTZ00243 826 FLGALAGKTRVLATHQVHVV-PRA---DYVVALGDGRVEFSGS 864 (1560)
T ss_pred HHHhhCCCEEEEEeCCHHHH-HhC---CEEEEEECCEEEEecC
Confidence 11367899999996543 234 5555555554443333
No 385
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.71 E-value=2.2e-17 Score=147.81 Aligned_cols=169 Identities=20% Similarity=0.229 Sum_probs=118.9
Q ss_pred eEEecceeeeeCcc-ccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhhhcCC--CCC
Q 025114 28 VLESGNVHAPIDEA-QVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIEQSVD--GTS 100 (257)
Q Consensus 28 ~l~~~~l~~~~~~~-~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~~~~~--~~~ 100 (257)
-||++|+.+.|... --+..||++|++ ||++.|+|.|||||||++++|.|+. |.+++|+..+..+... ..-
T Consensus 322 ~lelrnvrfay~~~~FhvgPiNl~ikr---GelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~L 398 (546)
T COG4615 322 TLELRNVRFAYQDNAFHVGPINLTIKR---GELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKL 398 (546)
T ss_pred ceeeeeeeeccCcccceecceeeEEec---CcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHH
Confidence 58999999999764 568999999999 9999999999999999999999998 5567777654322110 000
Q ss_pred HHHHHHH-------hCchH--HHHHHHHHHHHhcccC------c--cccccChhHhHHHHHHHHh-hCCcEEEEECCHHH
Q 025114 101 VAEIFKL-------YGEGF--FREKETEVLQKLSLMR------Q--LVVSTGGGAVTRPINWRYM-QKGISVWLDVPLEA 162 (257)
Q Consensus 101 v~e~~~~-------~g~~~--~~~~~~~~l~~l~~~~------~--~v~~lsgG~~qr~~~a~~l-~~~~vl~LDep~~~ 162 (257)
...+|.. .|.+. ..+.....|+++.+.+ + ....||-||+.|.+..-++ .+.+++++||=.+.
T Consensus 399 fSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAAD 478 (546)
T COG4615 399 FSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAAD 478 (546)
T ss_pred HHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhcc
Confidence 1112211 11111 1233445666665543 2 3567899999999987554 46789999984433
Q ss_pred ------------HHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHH
Q 025114 163 ------------LAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGE 203 (257)
Q Consensus 163 ------------L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~ 203 (257)
++.+++..|.|+..++|| ++|....||+..+.+|+..
T Consensus 479 QDPaFRR~FY~~lLp~LK~qGKTI~aIsHD----d~YF~~ADrll~~~~G~~~ 527 (546)
T COG4615 479 QDPAFRREFYQVLLPLLKEQGKTIFAISHD----DHYFIHADRLLEMRNGQLS 527 (546)
T ss_pred CChHHHHHHHHHHhHHHHHhCCeEEEEecC----chhhhhHHHHHHHhcCcee
Confidence 478899899999999999 3444445898888888654
No 386
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.71 E-value=8.7e-16 Score=125.51 Aligned_cols=164 Identities=32% Similarity=0.540 Sum_probs=128.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccCccccccChh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGG 137 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~~lsgG 137 (257)
..+.|+|++||||||+++.|+..+|++++|.|.+.+... ++++.+++...|+..|++.+.++++.+.. ...+..++||
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~-g~~~~~~~~~~g~~~~~~~e~~~~~~~~~-~~~vi~~ggg 80 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTS-NMTVAEIVEREGWAGFRARESAALEAVTA-PSTVIATGGG 80 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHh-CCCHHHHHHHHCHHHHHHHHHHHHHHhcC-CCeEEECCCC
Confidence 468999999999999999999999999999999988887 99999999999999999999888876542 4668889999
Q ss_pred HhHHHHHHHHhh-CCcEEEEECCHHHHHHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccc-ceecc
Q 025114 138 AVTRPINWRYMQ-KGISVWLDVPLEALAQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN-ARVSL 214 (257)
Q Consensus 138 ~~qr~~~a~~l~-~~~vl~LDep~~~L~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~-~~~~~ 214 (257)
...+.....++. .+.++|||.|.+.+.+|+..+ +...+|..-. ..+ .+.+..++..|...|.... .++
T Consensus 81 ~vl~~~~~~~l~~~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~----~~~---~~~~~~~~~~r~~~y~~~a~~~I-- 151 (171)
T PRK03731 81 IILTEENRHFMRNNGIVIYLCAPVSVLANRLEANPEEDQRPTLTG----KPI---SEEVAEVLAEREALYREVAHHII-- 151 (171)
T ss_pred ccCCHHHHHHHHhCCEEEEEECCHHHHHHHHccccccccCCcCCC----CCh---HHHHHHHHHHHHHHHHHhCCEEE--
Confidence 887777777776 578999999999999999753 2233443211 111 1566778888888887643 333
Q ss_pred hhhhhhccccCCCCCCHHHHHHHHHHHHH
Q 025114 215 ENIAVKLGHKDVSSLTPVTIAIEALEQIE 243 (257)
Q Consensus 215 ~~l~~~~~~~~~~~~~~~~~~~~i~~~i~ 243 (257)
+.+ .++++++..+.+.+.
T Consensus 152 ----------d~~-~~~e~v~~~i~~~l~ 169 (171)
T PRK03731 152 ----------DAT-QPPSQVVSEILSALA 169 (171)
T ss_pred ----------cCC-CCHHHHHHHHHHHHh
Confidence 433 689999998877764
No 387
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.71 E-value=4.9e-18 Score=142.45 Aligned_cols=136 Identities=18% Similarity=0.150 Sum_probs=86.5
Q ss_pred ccc-cccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCc---eecch---hhhhhcCCC------CCHHHHHHHh
Q 025114 42 QVL-KNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYS---FFDCD---TLIEQSVDG------TSVAEIFKLY 108 (257)
Q Consensus 42 ~~l-~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~---~~d~~---~~~~~~~~~------~~v~e~~~~~ 108 (257)
.-+ +++++++.+ | +++|+||||||||||+++|+++++.. .+.+. +++...... ..+.-+|+..
T Consensus 10 r~~~~~~~l~~~~---g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~ 85 (197)
T cd03278 10 KSFADKTTIPFPP---G-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNS 85 (197)
T ss_pred cCcCCCeeeecCC---C-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcC
Confidence 345 689999999 9 99999999999999999999987432 01111 111000000 0000001110
Q ss_pred Cch---HHHHHHHHHHHHhcccCccccccChhHhHHHHHHHHhh-----CCcEEEEECCHHHH-----------HHHHHh
Q 025114 109 GEG---FFREKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQ-----KGISVWLDVPLEAL-----------AQRIAA 169 (257)
Q Consensus 109 g~~---~~~~~~~~~l~~l~~~~~~v~~lsgG~~qr~~~a~~l~-----~~~vl~LDep~~~L-----------~~rl~~ 169 (257)
... ..+++..++++..+..++.+..||||++|++.+++++. .|.+++||||+++| ++++..
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~ 165 (197)
T cd03278 86 DGRYSIISQGDVSEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK 165 (197)
T ss_pred CCceeEEehhhHHHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc
Confidence 000 01234456666633345789999999999999998763 46899999999988 334432
Q ss_pred cCCCCccccCCCC
Q 025114 170 VGTDSRPLLHQCE 182 (257)
Q Consensus 170 ~g~~~~~~~h~~~ 182 (257)
+.+++.++|+++
T Consensus 166 -~~tiIiitH~~~ 177 (197)
T cd03278 166 -ETQFIVITHRKG 177 (197)
T ss_pred -CCEEEEEECCHH
Confidence 577889999843
No 388
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.69 E-value=6.5e-16 Score=145.63 Aligned_cols=155 Identities=40% Similarity=0.629 Sum_probs=129.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccCccccccChhH
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGA 138 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~~lsgG~ 138 (257)
.++|+|++||||||+++.|+..+|++++|.|..+++.. |+++.++|..+|+..|++.+.++++++....+.+.+++||.
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~-g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vis~Gggv 80 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERRE-GRSVRRIFEEDGEEYFRLKEKELLRELVERDNVVVATGGGV 80 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHc-CCCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEEECCCcc
Confidence 58999999999999999999999999999999998887 99999999999999999999999998754456788999999
Q ss_pred hHHHHHHHHhhCCcEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecchhhh
Q 025114 139 VTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIA 218 (257)
Q Consensus 139 ~qr~~~a~~l~~~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~~l~ 218 (257)
..+.....++.+..++|||.|.+.+.+|+... .||+..+. .+++..+++.|.+.|.... .
T Consensus 81 v~~~~~r~~l~~~~vI~L~as~e~l~~Rl~~~---~RPLl~~~---------~e~l~~L~~~R~~lY~~~~-~------- 140 (488)
T PRK13951 81 VIDPENRELLKKEKTLFLYAPPEVLMERVTTE---NRPLLREG---------KERIREIWERRKQFYTEFR-G------- 140 (488)
T ss_pred ccChHHHHHHhcCeEEEEECCHHHHHHHhccC---CCCCcccc---------HHHHHHHHHHHHHHHhccc-E-------
Confidence 88888887777656899999999999999753 46765321 1567789999999998752 2
Q ss_pred hhccccCCCCCCHHHHHHHHH
Q 025114 219 VKLGHKDVSSLTPVTIAIEAL 239 (257)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~i~ 239 (257)
+++++.++++++.+++
T Consensus 141 -----IDt~~~s~~e~~~~iv 156 (488)
T PRK13951 141 -----IDTSKLNEWETTALVV 156 (488)
T ss_pred -----EECCCCCHHHHHHHHH
Confidence 3677889988887763
No 389
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.69 E-value=4.3e-18 Score=144.37 Aligned_cols=153 Identities=18% Similarity=0.152 Sum_probs=90.4
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh-CCceecch-----hhhhhcCCCCCH
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL-GYSFFDCD-----TLIEQSVDGTSV 101 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l-g~~~~d~~-----~~~~~~~~~~~v 101 (257)
.|+++|+. .|.+. ++++|+... +|++++|+||||||||||+++|++.+ |....... ..+........+
T Consensus 5 ~i~l~nf~-~y~~~---~~i~~~~~~--~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v 78 (213)
T cd03279 5 KLELKNFG-PFREE---QVIDFTGLD--NNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEV 78 (213)
T ss_pred EEEEECCc-CcCCc---eEEeCCCCC--ccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEE
Confidence 47888988 66544 456665431 28899999999999999999999644 43321111 010000000000
Q ss_pred HHHHHH----------hCc--hHHHHHHHHHHHHhcc---cCccccccChhHhHHHHHHHHhh-----------CCcEEE
Q 025114 102 AEIFKL----------YGE--GFFREKETEVLQKLSL---MRQLVVSTGGGAVTRPINWRYMQ-----------KGISVW 155 (257)
Q Consensus 102 ~e~~~~----------~g~--~~~~~~~~~~l~~l~~---~~~~v~~lsgG~~qr~~~a~~l~-----------~~~vl~ 155 (257)
.-.|+. .+. ..+++.. .+....+ .++.+..+|||++|++.+++++. +|++++
T Consensus 79 ~~~f~~~~~~~~~~r~~gl~~~~~~~~~--~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~ll 156 (213)
T cd03279 79 SFTFQLGGKKYRVERSRGLDYDQFTRIV--LLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALF 156 (213)
T ss_pred EEEEEECCeEEEEEEecCCCHHHHHHhh--hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEE
Confidence 000000 010 0111110 1121111 24778999999999999998874 468999
Q ss_pred EECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhh
Q 025114 156 LDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYT 188 (257)
Q Consensus 156 LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~ 188 (257)
||||++++ +.++++.+.+++.++|+++.+..+|
T Consensus 157 lDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~ 200 (213)
T cd03279 157 IDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIP 200 (213)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhC
Confidence 99999887 3455445778999999965444443
No 390
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.68 E-value=1.5e-16 Score=144.69 Aligned_cols=154 Identities=21% Similarity=0.219 Sum_probs=104.9
Q ss_pred ceEEecceeeeeCccccccccceEecC--CCCCcEEEEEcCCCChHHHHHHHHHhhhCCceecchh--------hhhhcC
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEP--YLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDT--------LIEQSV 96 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~--~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~--------~~~~~~ 96 (257)
..++..+++|.|++ +.|++.+ +..||+++++||||-||||+.|+|||.+.+.--...+ ++...+
T Consensus 341 ~lv~y~~~~k~~g~------F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~ 414 (591)
T COG1245 341 TLVEYPDLKKTYGD------FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDY 414 (591)
T ss_pred eeeecchheeecCc------eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCC
Confidence 45677778887774 4444443 1228999999999999999999999998543211000 112223
Q ss_pred CCCCHHHHHHHhCchHH--HHHHHHHHHHhccc---CccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-------
Q 025114 97 DGTSVAEIFKLYGEGFF--REKETEVLQKLSLM---RQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL------- 163 (257)
Q Consensus 97 ~~~~v~e~~~~~g~~~~--~~~~~~~l~~l~~~---~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L------- 163 (257)
..||.+++.......+ .....++++-|.+. ++.+..||||+.||+++|..|. +.++.+||||.+.|
T Consensus 415 -~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~ 493 (591)
T COG1245 415 -DGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRII 493 (591)
T ss_pred -CCcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHH
Confidence 5678887754322211 01123556666654 4899999999999999998876 69999999999988
Q ss_pred ----HHHHHhc-CCCCccccCCCCCCchh
Q 025114 164 ----AQRIAAV-GTDSRPLLHQCESGDAY 187 (257)
Q Consensus 164 ----~~rl~~~-g~~~~~~~h~~~~~~~~ 187 (257)
++|+... +.+...+-||+-..+..
T Consensus 494 vakvIRR~~e~~~kta~vVdHDi~~~dyv 522 (591)
T COG1245 494 VAKVIRRFIENNEKTALVVDHDIYMIDYV 522 (591)
T ss_pred HHHHHHHHHhhcCceEEEEecceehhhhh
Confidence 4666543 66778888996544433
No 391
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.67 E-value=3.2e-17 Score=166.96 Aligned_cols=180 Identities=19% Similarity=0.162 Sum_probs=130.9
Q ss_pred cceEEecceeeeeCcc--ccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh------
Q 025114 26 ASVLESGNVHAPIDEA--QVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------ 93 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~--~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------ 93 (257)
.--|+++|++.+|... .||+||||+|++ ||.|||||..|||||||+..|-++. |.+.+|+-++..
T Consensus 1136 ~G~I~f~~~~~RYrp~lp~VLk~is~~I~p---~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dL 1212 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPNLPLVLKGISFTIKP---GEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDL 1212 (1381)
T ss_pred CCeEEEEEeEEEeCCCCcchhcCceEEEcC---CceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHH
Confidence 3469999999999764 799999999999 9999999999999999999999987 677888876521
Q ss_pred --------hc--CCCCCHHHHHHHhCchHHHHHHHHHHHHhccc----------C----ccccccChhHhHHHHHHHHhh
Q 025114 94 --------QS--VDGTSVAEIFKLYGEGFFREKETEVLQKLSLM----------R----QLVVSTGGGAVTRPINWRYMQ 149 (257)
Q Consensus 94 --------~~--~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~----------~----~~v~~lsgG~~qr~~~a~~l~ 149 (257)
+. .+.-|+..++.-+++ +..+...++|++..+. + ..-..+|-||+|-+.+||++.
T Consensus 1213 RsrlsIIPQdPvLFsGTvR~NLDPf~e-~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALL 1291 (1381)
T KOG0054|consen 1213 RSRLSIIPQDPVLFSGTVRFNLDPFDE-YSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALL 1291 (1381)
T ss_pred HhcCeeeCCCCceecCccccccCcccc-cCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHh
Confidence 10 011133332211111 1112223334333321 1 233557889999999998765
Q ss_pred -CCcEEEEECCHHHH-------HHH-HHh--cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceec
Q 025114 150 -KGISVWLDVPLEAL-------AQR-IAA--VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVS 213 (257)
Q Consensus 150 -~~~vl~LDep~~~L-------~~r-l~~--~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~ 213 (257)
+.++++|||.|+++ +++ ++. .+.|++-+-|.++.+..+ |+|..|.+|++..|++|...++
T Consensus 1292 r~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~----DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1292 RKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDS----DRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred ccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhc----CeEEEeeCCeEeecCChHHHHh
Confidence 79999999999887 233 332 378999999998887765 9999999999999999988874
No 392
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.67 E-value=1.2e-17 Score=138.49 Aligned_cols=181 Identities=18% Similarity=0.263 Sum_probs=131.4
Q ss_pred cceEEecceeeee----CccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCceec-chhh-------h-
Q 025114 26 ASVLESGNVHAPI----DEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFD-CDTL-------I- 92 (257)
Q Consensus 26 ~~~l~~~~l~~~~----~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d-~~~~-------~- 92 (257)
|+.|.++|++..+ |...+++++|+++.+ ||+-+|+|.+|||||-+.|.|.|.....|.- .|++ .
T Consensus 1 M~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnE---GEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~ 77 (330)
T COG4170 1 MPLLDIRNLTIEFKTSQGWVKAVDRVSMTLNE---GEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLR 77 (330)
T ss_pred CCcccccceEEEEecCCCceEeeeeeeeeecc---ceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhc
Confidence 5678899999988 446799999999999 9999999999999999999999987432211 1111 0
Q ss_pred ------hhcCCCCCHHHHHHH------------------------hCc--hHH---HHHHHHHHHHhcccC------ccc
Q 025114 93 ------EQSVDGTSVAEIFKL------------------------YGE--GFF---REKETEVLQKLSLMR------QLV 131 (257)
Q Consensus 93 ------~~~~~~~~v~e~~~~------------------------~g~--~~~---~~~~~~~l~~l~~~~------~~v 131 (257)
.+.. |..+.-+|+. .|. .+| .++.-++|.++|+.+ .++
T Consensus 78 L~Pr~RRk~i-g~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP 156 (330)
T COG4170 78 LSPRERRKLV-GHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP 156 (330)
T ss_pred CChHHhhhhh-ccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCc
Confidence 0011 2223333221 011 112 234567888999864 678
Q ss_pred cccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHH
Q 025114 132 VSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLW 198 (257)
Q Consensus 132 ~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~ 198 (257)
.+|.-|+-|++.+|-+++ +|.+++.||||..+ +.|+.+. +.++..++||+.....+| |++..||
T Consensus 157 ~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~---d~i~VlY 233 (330)
T COG4170 157 YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWA---DKINVLY 233 (330)
T ss_pred chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHh---hheEEEE
Confidence 889999999999997777 69999999999876 5666654 788899999987777777 8998888
Q ss_pred HHHHHHHhcccceec
Q 025114 199 EERGEAYANANARVS 213 (257)
Q Consensus 199 ~~r~~~y~~~~~~~~ 213 (257)
-|.....+..+++++
T Consensus 234 CGQ~~ESa~~e~l~~ 248 (330)
T COG4170 234 CGQTVESAPSEELVT 248 (330)
T ss_pred ecccccccchhHHhc
Confidence 887776666655553
No 393
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.67 E-value=5e-16 Score=147.22 Aligned_cols=152 Identities=22% Similarity=0.259 Sum_probs=108.7
Q ss_pred cceEEecceeeeeCc-cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC----Cceecchh-h--hhhc--
Q 025114 26 ASVLESGNVHAPIDE-AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG----YSFFDCDT-L--IEQS-- 95 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~-~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg----~~~~d~~~-~--~~~~-- 95 (257)
...+.++|++..-.+ ...|+++||+|++ |+.+.|.|+||||||||+|.|+|+-. .+-...+. + ..+.
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~---G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY 466 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLLSELNFEVRP---GERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPY 466 (604)
T ss_pred cceeEEeeeeEECCCCCeeeccceeeeCC---CCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCC
Confidence 467999999998864 6789999999999 99999999999999999999999852 21111111 1 1111
Q ss_pred CCCCCHHHHHHHhCch--HHHHHHHHHHHHhcccC---------ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH
Q 025114 96 VDGTSVAEIFKLYGEG--FFREKETEVLQKLSLMR---------QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL 163 (257)
Q Consensus 96 ~~~~~v~e~~~~~g~~--~~~~~~~~~l~~l~~~~---------~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L 163 (257)
++.-+..+.+...... .-.+...++|.++++.+ +.=..||+||+||++.||++. +|+.++|||.|++|
T Consensus 467 ~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsAL 546 (604)
T COG4178 467 LPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSAL 546 (604)
T ss_pred CCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhcc
Confidence 1122677766543322 22233456666666543 556679999999999998875 79999999999998
Q ss_pred H--------HHHHh--cCCCCccccCC
Q 025114 164 A--------QRIAA--VGTDSRPLLHQ 180 (257)
Q Consensus 164 ~--------~rl~~--~g~~~~~~~h~ 180 (257)
+ +-++. .+.+++.+.|.
T Consensus 547 De~~e~~l~q~l~~~lp~~tvISV~Hr 573 (604)
T COG4178 547 DEETEDRLYQLLKEELPDATVISVGHR 573 (604)
T ss_pred ChHHHHHHHHHHHhhCCCCEEEEeccc
Confidence 3 33343 36788888886
No 394
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.66 E-value=2.8e-17 Score=152.89 Aligned_cols=169 Identities=21% Similarity=0.294 Sum_probs=128.4
Q ss_pred CcceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhh---------
Q 025114 25 SASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTL--------- 91 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~--------- 91 (257)
..+.+++++++..- .++|+||++++ ||+++|.|--|||+|-+++.|.|.. |.+.+++..+
T Consensus 260 ~~~~l~v~~l~~~~----~~~dvSf~vr~---GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai 332 (500)
T COG1129 260 GEPVLEVRNLSGGG----KVRDVSFTVRA---GEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAI 332 (500)
T ss_pred CCcEEEEecCCCCC----ceeCceeEEeC---CcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHH
Confidence 45678888887643 58899999999 9999999999999999999999954 3455555432
Q ss_pred ------------hhhcCCCCCHHHHHHHh-----C-chH-----HHHHHHHHHHHhccc----CccccccChhHhHHHHH
Q 025114 92 ------------IEQSVDGTSVAEIFKLY-----G-EGF-----FREKETEVLQKLSLM----RQLVVSTGGGAVTRPIN 144 (257)
Q Consensus 92 ------------~~~~~~~~~v~e~~~~~-----g-~~~-----~~~~~~~~l~~l~~~----~~~v~~lsgG~~qr~~~ 144 (257)
.+-.+..+++.+++... . ... -+....++.+++.+. ++.+..||||-+|++.+
T Consensus 333 ~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvl 412 (500)
T COG1129 333 KAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVL 412 (500)
T ss_pred HcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHH
Confidence 11122355666654322 1 001 112234556666663 27899999999999999
Q ss_pred HHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHH
Q 025114 145 WRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGE 203 (257)
Q Consensus 145 a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~ 203 (257)
++.|. +|++++|||||-++ +++++..|.++++++.+++++...| ||+..|.+||+.
T Consensus 413 arwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~---DRIlVm~~Gri~ 480 (500)
T COG1129 413 ARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLS---DRILVMREGRIV 480 (500)
T ss_pred HHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhC---CEEEEEECCEEE
Confidence 99887 79999999999887 6888889999999999999888888 999888888754
No 395
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.66 E-value=4.7e-17 Score=165.80 Aligned_cols=180 Identities=20% Similarity=0.231 Sum_probs=130.2
Q ss_pred CcceEEecceeeeeCc---cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhh-hhh--
Q 025114 25 SASVLESGNVHAPIDE---AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTL-IEQ-- 94 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~---~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~-~~~-- 94 (257)
....++++|.++..+. .+.|+||||+|++ |+.++|+|+-|||||+|+..|.|.+ |...+.+.-- ..+
T Consensus 515 ~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~---G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~p 591 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDSESPEPTLKDINFEIKK---GQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQP 591 (1381)
T ss_pred CCceEEEeeeeEecCCCCCcccccceeEEecC---CCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEecccc
Confidence 3457999999999864 3489999999999 9999999999999999999999987 3333333311 111
Q ss_pred cCCCCCHHHHHHHhCchHHHHHHHHHHHHhccc---------C-----ccccccChhHhHHHHHHHHhh-CCcEEEEECC
Q 025114 95 SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLM---------R-----QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVP 159 (257)
Q Consensus 95 ~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~---------~-----~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep 159 (257)
-...-|+.|++-+ |..+.+++=.++++..++. + ..-..|||||+||+.+||++- +.++.+||.|
T Consensus 592 WI~ngTvreNILF-G~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDp 670 (1381)
T KOG0054|consen 592 WIQNGTVRENILF-GSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDP 670 (1381)
T ss_pred HhhCCcHHHhhhc-CccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCc
Confidence 0125578887754 4444444444444443331 1 567899999999999998875 7999999999
Q ss_pred HHHHHHHHHh-----------cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 160 LEALAQRIAA-----------VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 160 ~~~L~~rl~~-----------~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
.+.++....+ ++.|++.++|.+... +.+ |.+..|.+|++...|+.++.+
T Consensus 671 lSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L-~~a---d~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 671 LSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFL-PHA---DQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred chhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhh-hhC---CEEEEecCCeEecccCHHHHH
Confidence 9999533322 367899999985432 223 788888899888888876665
No 396
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.64 E-value=4.9e-17 Score=162.30 Aligned_cols=65 Identities=22% Similarity=0.219 Sum_probs=53.0
Q ss_pred HHHHHHhccc----CccccccChhHhHHHHHHHHhh----CCcEEEEECCHHHH-----------HHHHHhcCCCCcccc
Q 025114 118 TEVLQKLSLM----RQLVVSTGGGAVTRPINWRYMQ----KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLL 178 (257)
Q Consensus 118 ~~~l~~l~~~----~~~v~~lsgG~~qr~~~a~~l~----~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~ 178 (257)
.++++.+++. .+.+..|||||+||+.+++++. +|.+++||||+++| +.++...|.++++++
T Consensus 809 l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~ 888 (924)
T TIGR00630 809 LQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIE 888 (924)
T ss_pred HHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 3567777775 3678999999999999998875 37999999999998 456655688999999
Q ss_pred CCCC
Q 025114 179 HQCE 182 (257)
Q Consensus 179 h~~~ 182 (257)
|+++
T Consensus 889 H~~~ 892 (924)
T TIGR00630 889 HNLD 892 (924)
T ss_pred CCHH
Confidence 9954
No 397
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.63 E-value=1.2e-14 Score=116.26 Aligned_cols=143 Identities=48% Similarity=0.712 Sum_probs=111.8
Q ss_pred EEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccCccccccChhHh
Q 025114 60 IYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAV 139 (257)
Q Consensus 60 i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~~lsgG~~ 139 (257)
|.|+|++||||||+++.|+..+|+.+++.|.+..... +.++.+++...++..++..+.+++..+....+.+..+++|..
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~vi~~g~~~i 80 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRA-GMSIPEIFAEEGEEGFRELEREVLLLLLTKENAVIATGGGAV 80 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHc-CCCHHHHHHHHCHHHHHHHHHHHHHHHhccCCcEEECCCCcc
Confidence 7899999999999999999999999999999888777 778889998888888888888777776655577777777765
Q ss_pred HHHHHHHHhh-CCcEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhc-ccceec
Q 025114 140 TRPINWRYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN-ANARVS 213 (257)
Q Consensus 140 qr~~~a~~l~-~~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~-~~~~~~ 213 (257)
......+.+. ...++||+.|.+.+.+|+..++ .+|...+.. .+.+..++..|...|.. ++.++.
T Consensus 81 ~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~r~--~r~~~~~~~--------~~~~~~~~~~r~~~Y~~~ad~~i~ 146 (154)
T cd00464 81 LREENRRLLLENGIVVWLDASPEELLERLARDK--TRPLLQDED--------PERLRELLEEREPLYREVADLTID 146 (154)
T ss_pred CcHHHHHHHHcCCeEEEEeCCHHHHHHHhccCC--CCCCCCCCC--------HHHHHHHHHHHHHHHHHhCcEEEE
Confidence 5554444444 5789999999999999997643 455544311 14567888899999988 666663
No 398
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.9e-16 Score=145.54 Aligned_cols=164 Identities=23% Similarity=0.127 Sum_probs=112.9
Q ss_pred CCCCcceEEecceeeeeCcc--ccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCC----ceecchhh----
Q 025114 22 NSLSASVLESGNVHAPIDEA--QVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGY----SFFDCDTL---- 91 (257)
Q Consensus 22 ~~~~~~~l~~~~l~~~~~~~--~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~----~~~d~~~~---- 91 (257)
...+-|.+++.+|+|.|... +++.+++++++. ...++++|+||+||||++|++.+-+.+ ..+-...-
T Consensus 356 e~~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~---~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f 432 (582)
T KOG0062|consen 356 EVLSPPNLRISYVAFEYTPSEYQWRKQLGLDRES---DSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYF 432 (582)
T ss_pred CcCCCCeeEEEeeeccCCCcchhhhhccCCccch---hhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecch
Confidence 44456899999999999754 499999999999 899999999999999999999996631 11111000
Q ss_pred hhhcC--CCCCHH--HHHHHhCchHHHHHHHHHHHHhcccC----ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHH
Q 025114 92 IEQSV--DGTSVA--EIFKLYGEGFFREKETEVLQKLSLMR----QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEA 162 (257)
Q Consensus 92 ~~~~~--~~~~v~--e~~~~~g~~~~~~~~~~~l~~l~~~~----~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~ 162 (257)
..... ..+.+. ++....-+...++..++.|..+|+.. +.+..|||||+-|+.+|.... +|.+++|||||+.
T Consensus 433 ~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNh 512 (582)
T KOG0062|consen 433 AQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNH 512 (582)
T ss_pred hHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCcc
Confidence 00000 011111 11111111113444556788888864 668889999999999997665 7999999999988
Q ss_pred H--------HHHHHhcCCCCccccCCCCCCchhh
Q 025114 163 L--------AQRIAAVGTDSRPLLHQCESGDAYT 188 (257)
Q Consensus 163 L--------~~rl~~~g~~~~~~~h~~~~~~~~~ 188 (257)
| .+.|+..+..+++++||.+.....|
T Consensus 513 LD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c 546 (582)
T KOG0062|consen 513 LDRDSLGALAKALKNFNGGVVLVSHDEEFISSLC 546 (582)
T ss_pred ccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcC
Confidence 7 3556555668999999954444444
No 399
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.62 E-value=2.4e-16 Score=135.94 Aligned_cols=44 Identities=23% Similarity=0.209 Sum_probs=35.8
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
|+++|. +.|++..++++++ |++++|+||||||||||+++|++++
T Consensus 4 i~~~nf-ksy~~~~~~~~~~--------~~~~~i~GpNGsGKStll~ai~~~l 47 (243)
T cd03272 4 VIIQGF-KSYKDQTVIEPFS--------PKHNVVVGRNGSGKSNFFAAIRFVL 47 (243)
T ss_pred EEEeCc-cCcccCcccccCC--------CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 556665 5677777888875 5699999999999999999999664
No 400
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.62 E-value=3.8e-16 Score=156.70 Aligned_cols=178 Identities=22% Similarity=0.201 Sum_probs=126.0
Q ss_pred eEEecceeeee----CccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh------CCceecchhhhhhc--
Q 025114 28 VLESGNVHAPI----DEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL------GYSFFDCDTLIEQS-- 95 (257)
Q Consensus 28 ~l~~~~l~~~~----~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l------g~~~~d~~~~~~~~-- 95 (257)
+.-..|+.+.- +.+++|+||+=-+++ |..++|+|+|||||||||++|||.. |.+.+++....++.
T Consensus 787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kP---G~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~ 863 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKP---GVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFA 863 (1391)
T ss_pred eEEEEeCCccccccccceEhhhcCceEecC---CceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhc
Confidence 44445554444 457899999999999 9999999999999999999999985 33444443322111
Q ss_pred ------------CCCCCHHHHHHHhCc---------hHHHHHHHHHHHHhcccC---ccccc----cChhHhHHHHHH-H
Q 025114 96 ------------VDGTSVAEIFKLYGE---------GFFREKETEVLQKLSLMR---QLVVS----TGGGAVTRPINW-R 146 (257)
Q Consensus 96 ------------~~~~~v~e~~~~~g~---------~~~~~~~~~~l~~l~~~~---~~v~~----lsgG~~qr~~~a-~ 146 (257)
....||.|-+..... +.-.+.++++++-|++.+ ..|.. ||..|+.|..|+ .
T Consensus 864 R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVE 943 (1391)
T KOG0065|consen 864 RVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVE 943 (1391)
T ss_pred cccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEE
Confidence 134577776554221 111244567888888764 34444 889999999999 6
Q ss_pred HhhCC-cEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHH-HHHHHhcccc
Q 025114 147 YMQKG-ISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEE-RGEAYANANA 210 (257)
Q Consensus 147 ~l~~~-~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~-r~~~y~~~~~ 210 (257)
+.++| .+|+|||||++| +++++..|.+++...|++.. .+.+.+|++..|..| +.+.+|+..+
T Consensus 944 LvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~--~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 944 LVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSI--DIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcH--HHHHHHhHHHHHhcCCeEEEecCccc
Confidence 66788 899999999999 57787789999999999542 334567999777754 4455566544
No 401
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.61 E-value=1.8e-16 Score=158.64 Aligned_cols=66 Identities=20% Similarity=0.233 Sum_probs=54.1
Q ss_pred HHHHHHhcccC----ccccccChhHhHHHHHHHHhh-CC---cEEEEECCHHHH-----------HHHHHhcCCCCcccc
Q 025114 118 TEVLQKLSLMR----QLVVSTGGGAVTRPINWRYMQ-KG---ISVWLDVPLEAL-----------AQRIAAVGTDSRPLL 178 (257)
Q Consensus 118 ~~~l~~l~~~~----~~v~~lsgG~~qr~~~a~~l~-~~---~vl~LDep~~~L-----------~~rl~~~g~~~~~~~ 178 (257)
.+.++.+++.+ +.+..||||++||+.+++++. +| .+++||||+++| ++++...|.+++.++
T Consensus 811 l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiit 890 (943)
T PRK00349 811 LQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIE 890 (943)
T ss_pred HHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 45677788753 788999999999999998876 57 899999999888 456655688999999
Q ss_pred CCCCC
Q 025114 179 HQCES 183 (257)
Q Consensus 179 h~~~~ 183 (257)
|+++.
T Consensus 891 H~~~~ 895 (943)
T PRK00349 891 HNLDV 895 (943)
T ss_pred cCHHH
Confidence 99543
No 402
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.60 E-value=2.1e-16 Score=164.71 Aligned_cols=75 Identities=21% Similarity=0.159 Sum_probs=59.4
Q ss_pred HHHHHhccc----CccccccChhHhHHHHHHHHhh----CCcEEEEECCHHHH-----------HHHHHhcCCCCccccC
Q 025114 119 EVLQKLSLM----RQLVVSTGGGAVTRPINWRYMQ----KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLH 179 (257)
Q Consensus 119 ~~l~~l~~~----~~~v~~lsgG~~qr~~~a~~l~----~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h 179 (257)
++++.+++. ++.+..|||||+||+.+++++. +|.+++||||+++| +.++.+.|.++++++|
T Consensus 791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsH 870 (1809)
T PRK00635 791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH 870 (1809)
T ss_pred HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 467777774 3688999999999999998884 79999999999998 4666666889999999
Q ss_pred CCCCCchhhHHHHHHHHH
Q 025114 180 QCESGDAYTEALNRLSTL 197 (257)
Q Consensus 180 ~~~~~~~~~~~~~~v~~l 197 (257)
+++.+ .++ |++..|
T Consensus 871 dl~~i-~~a---DrVi~L 884 (1809)
T PRK00635 871 NMHVV-KVA---DYVLEL 884 (1809)
T ss_pred CHHHH-HhC---CEEEEE
Confidence 97654 444 665445
No 403
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=1.2e-15 Score=138.34 Aligned_cols=174 Identities=20% Similarity=0.167 Sum_probs=122.3
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh-C-Ccee-----------cchh---
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL-G-YSFF-----------DCDT--- 90 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l-g-~~~~-----------d~~~--- 90 (257)
+-|.++|.+.+-.++..+.+.||.|-. |..++|+||||-|||||+|.|+..- . ++-+ |...
T Consensus 263 ~DIKiEnF~ISA~Gk~LFvnA~L~Iv~---GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~ 339 (807)
T KOG0066|consen 263 MDIKIENFDISAQGKLLFVNASLTIVY---GRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAID 339 (807)
T ss_pred ccceeeeeeeecccceeeeccceEEEe---cceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHH
Confidence 358899999999899999999999999 9999999999999999999998642 1 1111 1100
Q ss_pred -hhhhc------------------CCCCCHHHH-------HHHhCchHHHHHHHHHHHHhcccC----ccccccChhHhH
Q 025114 91 -LIEQS------------------VDGTSVAEI-------FKLYGEGFFREKETEVLQKLSLMR----QLVVSTGGGAVT 140 (257)
Q Consensus 91 -~~~~~------------------~~~~~v~e~-------~~~~g~~~~~~~~~~~l~~l~~~~----~~v~~lsgG~~q 140 (257)
+.... ....++.+- +...|......+.+.+|.-||... ++...+|||.+.
T Consensus 340 tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRM 419 (807)
T KOG0066|consen 340 TVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRM 419 (807)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceee
Confidence 00000 011111111 111222222334567788777653 788899999999
Q ss_pred HHHHHHHhh-CCcEEEEECCHHHH--------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHh
Q 025114 141 RPINWRYMQ-KGISVWLDVPLEAL--------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYA 206 (257)
Q Consensus 141 r~~~a~~l~-~~~vl~LDep~~~L--------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~ 206 (257)
|+.+|++|- +|.+++|||||..| ..-|.....|.+.++||-...+..| ..|+.|.+.++..|.
T Consensus 420 RvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VC---tdIIHLD~qkLhyYr 491 (807)
T KOG0066|consen 420 RVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVC---TDIIHLDNQKLHYYR 491 (807)
T ss_pred ehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHH---HHHhhhhhhhhhhhc
Confidence 999998775 89999999999988 2334433468889999976677777 777788888877764
No 404
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.59 E-value=4.1e-17 Score=138.37 Aligned_cols=142 Identities=18% Similarity=0.115 Sum_probs=86.9
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCceecc--hhh---hhh--cCCCCCH
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDC--DTL---IEQ--SVDGTSV 101 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~--~~~---~~~--~~~~~~v 101 (257)
|+++|.. .|+++.+++++++ ++++|+|||||||||++++|.-.+|...... ..+ ... ..+..+.
T Consensus 6 l~l~nfk-~~~~~~~l~~~~~--------~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~ 76 (212)
T cd03274 6 LVLENFK-SYAGEQVIGPFHK--------SFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLSDLIHNSAGHPNLDS 76 (212)
T ss_pred EEEECcc-cCCCCeeeccCCC--------CeEEEECCCCCCHHHHHHHHHHHhccCHHHhhhhhHHHHhcCCCCCCCCce
Confidence 6778875 8899999999887 4789999999999999999986655321100 000 000 0001111
Q ss_pred HHH---HH---------HhCchH-HHH---HHHHHHHHhccc---CccccccChhHhHHHHHHHHhh-----CCcEEEEE
Q 025114 102 AEI---FK---------LYGEGF-FRE---KETEVLQKLSLM---RQLVVSTGGGAVTRPINWRYMQ-----KGISVWLD 157 (257)
Q Consensus 102 ~e~---~~---------~~g~~~-~~~---~~~~~l~~l~~~---~~~v~~lsgG~~qr~~~a~~l~-----~~~vl~LD 157 (257)
.++ |. ..+... ... ...++++.+++. ++.+..+|+|++|++.+++++. .|.+++||
T Consensus 77 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililD 156 (212)
T cd03274 77 CSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMD 156 (212)
T ss_pred EEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEc
Confidence 111 10 011000 000 012233334443 2568899999999999998663 37999999
Q ss_pred CCHHHH-----------HHHHHhcCCCCccccCC
Q 025114 158 VPLEAL-----------AQRIAAVGTDSRPLLHQ 180 (257)
Q Consensus 158 ep~~~L-----------~~rl~~~g~~~~~~~h~ 180 (257)
||+++| ++++. .+.+++.++|+
T Consensus 157 EPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs~~ 189 (212)
T cd03274 157 EIDAALDFRNVSIVANYIKERT-KNAQFIVISLR 189 (212)
T ss_pred CCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECc
Confidence 999998 23332 34567778887
No 405
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.57 E-value=1e-15 Score=132.82 Aligned_cols=142 Identities=17% Similarity=0.156 Sum_probs=87.9
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCc-----eecch-hhhhhc-------
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYS-----FFDCD-TLIEQS------- 95 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~-----~~d~~-~~~~~~------- 95 (257)
|.++|. +.|.+..++. .+. ..+++|+||||||||||+++|+++++.. ...+. +++...
T Consensus 6 ~~~~~f-~~~~~~~~~~----~~~----~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~ 76 (251)
T cd03273 6 IILDGF-KSYATRTVIS----GFD----PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITK 76 (251)
T ss_pred EEEeCc-cccCcCEeec----cCC----CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcE
Confidence 455665 5555433222 233 3589999999999999999999998542 12222 211100
Q ss_pred ------CC---------------CCCHHHHHHH--------hCchHHHHHHHHHHHHhccc-------------------
Q 025114 96 ------VD---------------GTSVAEIFKL--------YGEGFFREKETEVLQKLSLM------------------- 127 (257)
Q Consensus 96 ------~~---------------~~~v~e~~~~--------~g~~~~~~~~~~~l~~l~~~------------------- 127 (257)
+. ..++.+.+.. .+....++...++|+.+++.
T Consensus 77 ~~v~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~ 156 (251)
T cd03273 77 ASVTIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNM 156 (251)
T ss_pred EEEEEEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHh
Confidence 00 0111110100 01112234556778888764
Q ss_pred ----CccccccChhHhHHHHHHHHhh-----CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCC
Q 025114 128 ----RQLVVSTGGGAVTRPINWRYMQ-----KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQ 180 (257)
Q Consensus 128 ----~~~v~~lsgG~~qr~~~a~~l~-----~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~ 180 (257)
+..+..||+|++|++.+++++. .|.++++|||+++| ++++. .|.+++.++|+
T Consensus 157 ~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~ 228 (251)
T cd03273 157 GGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLK 228 (251)
T ss_pred HHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECC
Confidence 1568899999999999998763 47999999999888 23332 36778889998
No 406
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.57 E-value=1.4e-15 Score=138.28 Aligned_cols=146 Identities=25% Similarity=0.271 Sum_probs=95.3
Q ss_pred ceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCceec------chhhhhhcCCCCCHHHHHH
Q 025114 33 NVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFD------CDTLIEQSVDGTSVAEIFK 106 (257)
Q Consensus 33 ~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d------~~~~~~~~~~~~~v~e~~~ 106 (257)
++..+||.. -++=..|-+.. +|++++|+|+||-||||.+|+|+|.+.+.+-+ .|.++.. +.|..+...|.
T Consensus 79 e~vHRYg~N-gFkL~~LP~pr--~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~-FrGtELq~YF~ 154 (591)
T COG1245 79 EVVHRYGVN-GFKLYRLPTPR--PGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKR-FRGTELQNYFK 154 (591)
T ss_pred cceeeccCC-ceEEecCCCCC--CCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHH-hhhhHHHHHHH
Confidence 456677632 12222332222 39999999999999999999999998443222 2223222 22333333333
Q ss_pred HhCc---------hH-------H-------------HHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcE
Q 025114 107 LYGE---------GF-------F-------------REKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGIS 153 (257)
Q Consensus 107 ~~g~---------~~-------~-------------~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~v 153 (257)
..-+ ++ + +....++.+++++.+ +.+..||||+.||+++|+.+. +.++
T Consensus 155 ~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADv 234 (591)
T COG1245 155 KLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADV 234 (591)
T ss_pred HHHcCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCE
Confidence 2110 00 0 012246677777754 899999999999999997665 7999
Q ss_pred EEEECCHHHH-----------HHHHHhcCCCCccccCCCC
Q 025114 154 VWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCE 182 (257)
Q Consensus 154 l~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~ 182 (257)
.++|||++-| ++.+.+.+..++.+.||+.
T Consensus 235 Y~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLa 274 (591)
T COG1245 235 YFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLA 274 (591)
T ss_pred EEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHH
Confidence 9999999988 4555555678999999954
No 407
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.56 E-value=2.2e-14 Score=120.42 Aligned_cols=140 Identities=16% Similarity=0.044 Sum_probs=84.2
Q ss_pred cccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCcee---cch---hhhhhcCCCCCHHHHHHH------hCc
Q 025114 43 VLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFF---DCD---TLIEQSVDGTSVAEIFKL------YGE 110 (257)
Q Consensus 43 ~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~---d~~---~~~~~~~~~~~v~e~~~~------~g~ 110 (257)
.++++++++.+ | +.+|+||||||||||+..|.-.++.... .+. +++........+.-.|.. ...
T Consensus 11 ~~~~~~l~f~~---g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~ 86 (198)
T cd03276 11 CHRHLQIEFGP---R-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLC 86 (198)
T ss_pred ceeeeEEecCC---C-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCC
Confidence 45677888887 6 7799999999999999999865543211 111 111100000000000000 000
Q ss_pred hHHHHHHHHHHHHhcccCccccccChhHhHHHHHHHHh-----hCCcEEEEECCHHHH-----------HHHHHhc--C-
Q 025114 111 GFFREKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYM-----QKGISVWLDVPLEAL-----------AQRIAAV--G- 171 (257)
Q Consensus 111 ~~~~~~~~~~l~~l~~~~~~v~~lsgG~~qr~~~a~~l-----~~~~vl~LDep~~~L-----------~~rl~~~--g- 171 (257)
..-.....++++.-...++.+..||+|+++++.+++++ .+|++++||||++++ +.++... +
T Consensus 87 ~~~~~~~~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~ 166 (198)
T cd03276 87 VLSQDMARSFLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGR 166 (198)
T ss_pred HHHHHHHHHHhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCc
Confidence 01123344555552223478999999999999999776 479999999999988 2333222 2
Q ss_pred CCCccccCCCCCCch
Q 025114 172 TDSRPLLHQCESGDA 186 (257)
Q Consensus 172 ~~~~~~~h~~~~~~~ 186 (257)
.++..++|+++.+..
T Consensus 167 ~~iii~th~~~~i~~ 181 (198)
T cd03276 167 QFIFITPQDISGLAS 181 (198)
T ss_pred EEEEEECCccccccc
Confidence 367788899776654
No 408
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.55 E-value=2.5e-14 Score=133.35 Aligned_cols=148 Identities=18% Similarity=0.184 Sum_probs=99.0
Q ss_pred cceEEecceeeeeC--ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC----C------------ceec
Q 025114 26 ASVLESGNVHAPID--EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG----Y------------SFFD 87 (257)
Q Consensus 26 ~~~l~~~~l~~~~~--~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg----~------------~~~d 87 (257)
..++++++|+..-. +..+++|+||+|++ |+.+-|.||||||||+|+|.|+|+-. . -|+.
T Consensus 431 Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~---g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflP 507 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTNGDLLIENLSLEVPS---GQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLP 507 (659)
T ss_pred cceEEeeeeeecCCCCCceeeeeeeeEecC---CCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEec
Confidence 46899999999774 45678889999999 99999999999999999999999751 1 1111
Q ss_pred chhhhhhcCCCCCHHHHHHHh-----Cc--hHHHHHHH---------HHHHHhcccC-----ccccccChhHhHHHHHHH
Q 025114 88 CDTLIEQSVDGTSVAEIFKLY-----GE--GFFREKET---------EVLQKLSLMR-----QLVVSTGGGAVTRPINWR 146 (257)
Q Consensus 88 ~~~~~~~~~~~~~v~e~~~~~-----g~--~~~~~~~~---------~~l~~l~~~~-----~~v~~lsgG~~qr~~~a~ 146 (257)
...++. .| |+.+-+-.. .+ ....++.. .++++.+-.+ .....||+|++||.+.||
T Consensus 508 QrPYmt---~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~AR 583 (659)
T KOG0060|consen 508 QRPYMT---LG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFAR 583 (659)
T ss_pred CCCCcc---cc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHH
Confidence 111110 01 111110000 00 00011122 3333433222 456789999999999999
Q ss_pred Hhh-CCcEEEEECCHHHH--------HHHHHhcCCCCccccCC
Q 025114 147 YMQ-KGISVWLDVPLEAL--------AQRIAAVGTDSRPLLHQ 180 (257)
Q Consensus 147 ~l~-~~~vl~LDep~~~L--------~~rl~~~g~~~~~~~h~ 180 (257)
++- +|++.+|||.|+++ .+.+++.|+|.+-+.|-
T Consensus 584 Lfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHR 626 (659)
T KOG0060|consen 584 LFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHR 626 (659)
T ss_pred HHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccH
Confidence 875 79999999999988 35555668998888885
No 409
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.54 E-value=4.2e-15 Score=123.02 Aligned_cols=173 Identities=17% Similarity=0.130 Sum_probs=115.1
Q ss_pred CcceEEecceeeeeCc-cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-----h
Q 025114 25 SASVLESGNVHAPIDE-AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE-----Q 94 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~-~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~-----~ 94 (257)
....+++.++.|.|.. .+++-|+|++++. |....|+|.||||||||+|+|+|.. |.+.+.+.+-+. .
T Consensus 10 ~~~aievsgl~f~y~~~dP~~~Dfnldlp~---gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~ 86 (291)
T KOG2355|consen 10 SDFAIEVSGLQFKYKVSDPIFFDFNLDLPA---GSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLES 86 (291)
T ss_pred ccceEEEeccEEecccCCceEEEEeeccCC---CceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccc
Confidence 4567999999999964 6899999999999 9999999999999999999999864 111111111000 0
Q ss_pred ---------------------cC-CCCCHHHHHHHhCchHHHHHHHHHHHHhcccCc-cccccChhHhHHHHHHHHhhC-
Q 025114 95 ---------------------SV-DGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQ-LVVSTGGGAVTRPINWRYMQK- 150 (257)
Q Consensus 95 ---------------------~~-~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~-~v~~lsgG~~qr~~~a~~l~~- 150 (257)
.. ..+++..++.-.+-..+ ++.+++++-|.+.-+ .....|-||+.|+.++.-|.+
T Consensus 87 Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp-~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~P 165 (291)
T KOG2355|consen 87 SGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDP-ERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKP 165 (291)
T ss_pred cCceeEecccccccccccccccccccccHHHHHhhccCCCh-hHhhhhhhheeccceEEEeeccccchhhhHHHHhcccc
Confidence 00 12344443322222223 333455666665433 467789999999999965555
Q ss_pred CcEEEEECCHHHH--------H----HHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHH
Q 025114 151 GISVWLDVPLEAL--------A----QRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEA 204 (257)
Q Consensus 151 ~~vl~LDep~~~L--------~----~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~ 204 (257)
-++++|||-|-.| + ....++|.+++..+|-.+....+. .++..+..|++..
T Consensus 166 fkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wp---thl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 166 FKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWP---THLVYIKSGKLVD 228 (291)
T ss_pred eeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcc---hhEEEecCCeeee
Confidence 4799999988665 1 222346889999999766655554 5666666666554
No 410
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.47 E-value=9.9e-14 Score=128.23 Aligned_cols=149 Identities=19% Similarity=0.221 Sum_probs=100.0
Q ss_pred eEEecceeeee-CccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCC-------------ceecchh---
Q 025114 28 VLESGNVHAPI-DEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGY-------------SFFDCDT--- 90 (257)
Q Consensus 28 ~l~~~~l~~~~-~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~-------------~~~d~~~--- 90 (257)
-|.++|+-.-- .+..++..++|+|++ |-.+.|+||||||||+|.|+|+|+-.. -|+....
T Consensus 481 gI~lenIpvItP~~~vvv~~Ltf~i~~---G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms 557 (728)
T KOG0064|consen 481 GIILENIPVITPAGDVLVPKLTFQIEP---GMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMS 557 (728)
T ss_pred ceEEecCceeccCcceeecceeEEecC---CceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccC
Confidence 47788877665 346689999999999 999999999999999999999997410 0122211
Q ss_pred ---hhhhcCCCCCHHHHHHHhCchHHHHH-HHHHHHHhccc------------CccccccChhHhHHHHHHHHhh-CCcE
Q 025114 91 ---LIEQSVDGTSVAEIFKLYGEGFFREK-ETEVLQKLSLM------------RQLVVSTGGGAVTRPINWRYMQ-KGIS 153 (257)
Q Consensus 91 ---~~~~~~~~~~v~e~~~~~g~~~~~~~-~~~~l~~l~~~------------~~~v~~lsgG~~qr~~~a~~l~-~~~v 153 (257)
+-++.....|+.++... | +.+. -..+|..+.+. ...-..||||++||..+|+.+- +|+.
T Consensus 558 ~gtlRDQIIYPdS~e~~~~k-g---~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPky 633 (728)
T KOG0064|consen 558 GGTLRDQIIYPDSSEQMKRK-G---YTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKY 633 (728)
T ss_pred cCcccceeecCCcHHHHHhc-C---CCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcch
Confidence 11222224455554433 1 1111 11222222221 1455679999999999998874 7999
Q ss_pred EEEECCHHHH--------HHHHHhcCCCCccccCCCCC
Q 025114 154 VWLDVPLEAL--------AQRIAAVGTDSRPLLHQCES 183 (257)
Q Consensus 154 l~LDep~~~L--------~~rl~~~g~~~~~~~h~~~~ 183 (257)
.+|||-|+.+ .+..+..|++.+-++|....
T Consensus 634 alLDEcTsAvsidvE~~i~~~ak~~gi~llsithrpsl 671 (728)
T KOG0064|consen 634 ALLDECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSL 671 (728)
T ss_pred hhhhhhhcccccchHHHHHHHHHhcCceEEEeecCccH
Confidence 9999999887 34444558888888998543
No 411
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.46 E-value=8.9e-14 Score=127.85 Aligned_cols=178 Identities=17% Similarity=0.234 Sum_probs=136.9
Q ss_pred CcceEEecceeeeeCc-cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh-------
Q 025114 25 SASVLESGNVHAPIDE-AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI------- 92 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~-~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~------- 92 (257)
..++|++++|+..-.. ...+++|||+|+. ||+++|.|-.|-|-+.|+..|+|+. |.+.+++.++.
T Consensus 254 g~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~---GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~ 330 (501)
T COG3845 254 GEVVLEVEDLSVKDRRGVTAVKDVSFEVRA---GEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRE 330 (501)
T ss_pred CCeEEEEeeeEeecCCCCceeeeeeeEEec---CcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHH
Confidence 4679999999997754 5789999999999 9999999999999999999999987 45666666541
Q ss_pred ---------------hhcCCCCCHHHHHHH--hCc-----------hHHHHHHHHHHHHhcccC----ccccccChhHhH
Q 025114 93 ---------------EQSVDGTSVAEIFKL--YGE-----------GFFREKETEVLQKLSLMR----QLVVSTGGGAVT 140 (257)
Q Consensus 93 ---------------~~~~~~~~v~e~~~~--~g~-----------~~~~~~~~~~l~~l~~~~----~~v~~lsgG~~q 140 (257)
.-....+++.+++-. +.. ...+....+++++++... .++.+||||.+|
T Consensus 331 ~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQ 410 (501)
T COG3845 331 RRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQ 410 (501)
T ss_pred HHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCccee
Confidence 001135677776432 111 112334557778877643 568999999999
Q ss_pred HHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcc
Q 025114 141 RPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANA 208 (257)
Q Consensus 141 r~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~ 208 (257)
++.++|-+. +|++++...||.+| +...++.|..+..++-|++++...| |++..+++||+..-.++
T Consensus 411 K~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~ls---DrIaVi~~Gri~~~~~~ 487 (501)
T COG3845 411 KLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELS---DRIAVIYEGRIVGIVPP 487 (501)
T ss_pred hhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhh---heeeeeeCCceeccccc
Confidence 999998776 79999999999998 2333456889999999999988888 99999999987644433
No 412
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.45 E-value=1.1e-13 Score=119.91 Aligned_cols=51 Identities=16% Similarity=-0.055 Sum_probs=41.4
Q ss_pred cccccChhHhHHHHHHHHhh-----CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCC
Q 025114 130 LVVSTGGGAVTRPINWRYMQ-----KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQ 180 (257)
Q Consensus 130 ~v~~lsgG~~qr~~~a~~l~-----~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~ 180 (257)
.+..||+|+++++.+++++. .|.+++||||+++| +.++...|.+++.++|+
T Consensus 152 ~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~ 218 (247)
T cd03275 152 DMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLK 218 (247)
T ss_pred hHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECC
Confidence 35889999999999998774 38999999999988 33443347789999998
No 413
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.44 E-value=1.1e-12 Score=108.80 Aligned_cols=159 Identities=19% Similarity=0.205 Sum_probs=88.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHH-----------------
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETE----------------- 119 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~----------------- 119 (257)
|++++|+||||||||||+|+|++.+++.+++.+..+.... .....+.+...++.+++..+..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~ 80 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPA-SAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGI 80 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCcc-chhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcH
Confidence 7899999999999999999999998876666555433321 2222222222222222221111
Q ss_pred -HHHHhcccCccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHH
Q 025114 120 -VLQKLSLMRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTL 197 (257)
Q Consensus 120 -~l~~l~~~~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l 197 (257)
+-+.+.. ...+... |+......+.+.+. ...+++|+.|.+.+.+|+..++.. . . +.+...
T Consensus 81 ~~~~~l~~-g~~VI~~-G~~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~~------~---~-------~~i~~r 142 (186)
T PRK10078 81 EIDLWLHA-GFDVLVN-GSRAHLPQARARYQSALLPVCLQVSPEILRQRLENRGRE------N---A-------SEINAR 142 (186)
T ss_pred HHHHHHhC-CCEEEEe-ChHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCCC------C---H-------HHHHHH
Confidence 1111111 2345543 33333344555554 356789999999999999754311 1 0 112122
Q ss_pred HHHHHHHHhcccceecchhhhhhccccCCCCCCHHHHHHHHHHHHHhhhc
Q 025114 198 WEERGEAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLK 247 (257)
Q Consensus 198 ~~~r~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 247 (257)
+ .|...|..++.++ ++ ++.+++++++++...+...-+
T Consensus 143 l-~r~~~~~~ad~~v-----------i~-~~~s~ee~~~~i~~~l~~~~~ 179 (186)
T PRK10078 143 L-ARAARYQPQDCHT-----------LN-NDGSLRQSVDTLLTLLHLSQK 179 (186)
T ss_pred H-HHhhhhccCCEEE-----------Ee-CCCCHHHHHHHHHHHHhhcCc
Confidence 2 3344454444222 12 457899999998888865443
No 414
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.43 E-value=3.2e-13 Score=122.00 Aligned_cols=137 Identities=23% Similarity=0.291 Sum_probs=95.5
Q ss_pred ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC-C-----------ceecchhh-------hhhcCCCCC
Q 025114 40 EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG-Y-----------SFFDCDTL-------IEQSVDGTS 100 (257)
Q Consensus 40 ~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg-~-----------~~~d~~~~-------~~~~~~~~~ 100 (257)
...+|+|+||++++ |++++|+|+|||||||++++|+|..- . .-+..+.+ .+..+.+.+
T Consensus 395 eryvlr~vNL~ikp---GdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~t 471 (593)
T COG2401 395 ERYVLRNLNLEIKP---GDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVT 471 (593)
T ss_pred eeeeeeceeeEecC---CCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchh
Confidence 35689999999999 99999999999999999999999751 1 11111110 111222223
Q ss_pred HHHHHHH-hCchHHHHHHHHHHHHhcccC-----ccccccChhHhHHHHHHHHhhC-CcEEEEECCHHHH----------
Q 025114 101 VAEIFKL-YGEGFFREKETEVLQKLSLMR-----QLVVSTGGGAVTRPINWRYMQK-GISVWLDVPLEAL---------- 163 (257)
Q Consensus 101 v~e~~~~-~g~~~~~~~~~~~l~~l~~~~-----~~v~~lsgG~~qr~~~a~~l~~-~~vl~LDep~~~L---------- 163 (257)
+.+-+.. -|. -....++|.+.|+.+ +....||-||+.|..+|.++++ |.+++.||=.+.|
T Consensus 472 ilehl~s~tGD---~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVAr 548 (593)
T COG2401 472 ILEHLRSKTGD---LNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVAR 548 (593)
T ss_pred HHHHHhhccCc---hhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHH
Confidence 3322211 111 123457888888876 7889999999999999999985 8999999877666
Q ss_pred -HHHHHh-cCCCCccccCCCC
Q 025114 164 -AQRIAA-VGTDSRPLLHQCE 182 (257)
Q Consensus 164 -~~rl~~-~g~~~~~~~h~~~ 182 (257)
+.+++. .|+|...++|..+
T Consensus 549 kiselaRe~giTlivvThrpE 569 (593)
T COG2401 549 KISELAREAGITLIVVTHRPE 569 (593)
T ss_pred HHHHHHHHhCCeEEEEecCHH
Confidence 344543 4888888999843
No 415
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.43 E-value=4.1e-13 Score=113.19 Aligned_cols=122 Identities=18% Similarity=0.104 Sum_probs=71.2
Q ss_pred ccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh-CCceecc------hhhhhhcC--------------------CC
Q 025114 46 NKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL-GYSFFDC------DTLIEQSV--------------------DG 98 (257)
Q Consensus 46 ~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l-g~~~~d~------~~~~~~~~--------------------~~ 98 (257)
..++++.+ | +++|+||||||||||+++|...+ |....+. ...+.... ..
T Consensus 15 ~~~l~~~~---g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~ 90 (204)
T cd03240 15 RSEIEFFS---P-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRS 90 (204)
T ss_pred ceEEecCC---C-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEE
Confidence 34566777 7 99999999999999999996333 3222111 11111000 00
Q ss_pred CCHHHHHHHhCchHHHHHHHHHHHHhcccCccccccChhHhHH------HHHHHHhh-CCcEEEEECCHHHHH----H--
Q 025114 99 TSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTR------PINWRYMQ-KGISVWLDVPLEALA----Q-- 165 (257)
Q Consensus 99 ~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~~lsgG~~qr------~~~a~~l~-~~~vl~LDep~~~L~----~-- 165 (257)
+++.+.+... ......+.+ ++.+..||+|++++ .++++++. +|++++||||+++|+ .
T Consensus 91 ~~~~~~~~~~----~~~~~~~~~------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~ 160 (204)
T cd03240 91 LAILENVIFC----HQGESNWPL------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEES 160 (204)
T ss_pred hhHhhceeee----chHHHHHHH------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHH
Confidence 1121111110 011111111 46788999999997 45666665 799999999998873 2
Q ss_pred ------HHHhc-CCCCccccCCC
Q 025114 166 ------RIAAV-GTDSRPLLHQC 181 (257)
Q Consensus 166 ------rl~~~-g~~~~~~~h~~ 181 (257)
++++. +.+++.++|+.
T Consensus 161 l~~~l~~~~~~~~~~iiiitH~~ 183 (204)
T cd03240 161 LAEIIEERKSQKNFQLIVITHDE 183 (204)
T ss_pred HHHHHHHHHhccCCEEEEEEecH
Confidence 22222 56778888873
No 416
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.42 E-value=9.4e-14 Score=116.62 Aligned_cols=114 Identities=15% Similarity=0.146 Sum_probs=75.4
Q ss_pred cccccceEecCCCCCc-EEEEEcCCCChHHHHHHHHH-hhh----CCceecchhhhhhcCCCCCHHHHHHHhCchHHHHH
Q 025114 43 VLKNKSQEIEPYLSGR-CIYLVGMMGSGKTTVGKILS-GVL----GYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREK 116 (257)
Q Consensus 43 ~l~~isl~i~~~~~Ge-~i~LiG~nGaGKSTLlk~La-g~l----g~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~ 116 (257)
.+-++||++.. |+ +++|+||||||||||+|.|+ ..+ |....... ...+. ++ .
T Consensus 16 ~~~~~~~~i~~---~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~--------~~~~~-~~---~------- 73 (200)
T cd03280 16 KVVPLDIQLGE---NKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAE--------GSSLP-VF---E------- 73 (200)
T ss_pred ceEcceEEECC---CceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccc--------cccCc-Cc---c-------
Confidence 45689999998 84 79999999999999999998 211 21111000 00000 00 0
Q ss_pred HHHHHHHhcc---cCccccccChhHhHHHHHHHHhhCCcEEEEECCHHHH------------HHHHHhcCCCCccccCC
Q 025114 117 ETEVLQKLSL---MRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEAL------------AQRIAAVGTDSRPLLHQ 180 (257)
Q Consensus 117 ~~~~l~~l~~---~~~~v~~lsgG~~qr~~~a~~l~~~~vl~LDep~~~L------------~~rl~~~g~~~~~~~h~ 180 (257)
+.+..++. ....+..+|+|++++..+++.+.+|.++++|||++++ ++.+.+.+.+++.++|+
T Consensus 74 --~~~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~ 150 (200)
T cd03280 74 --NIFADIGDEQSIEQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHY 150 (200)
T ss_pred --EEEEecCchhhhhcCcchHHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCH
Confidence 00011111 1245678999999999988877889999999999776 23344457788999997
No 417
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.38 E-value=2e-12 Score=124.75 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=54.7
Q ss_pred HHHHHhcccC----ccccccChhHhHHHHHHHHhh-C---CcEEEEECCHHHH-----------HHHHHhcCCCCccccC
Q 025114 119 EVLQKLSLMR----QLVVSTGGGAVTRPINWRYMQ-K---GISVWLDVPLEAL-----------AQRIAAVGTDSRPLLH 179 (257)
Q Consensus 119 ~~l~~l~~~~----~~v~~lsgG~~qr~~~a~~l~-~---~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h 179 (257)
+.|..+|+.. ++.-.||||+.||+.+|.-|. + ..+.+|||||.+| +.||...|.+++.+.|
T Consensus 804 qtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEH 883 (935)
T COG0178 804 QTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEH 883 (935)
T ss_pred HHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 5566777764 889999999999999997664 2 4788999999998 6888888999999999
Q ss_pred CCCC
Q 025114 180 QCES 183 (257)
Q Consensus 180 ~~~~ 183 (257)
+++-
T Consensus 884 NLdV 887 (935)
T COG0178 884 NLDV 887 (935)
T ss_pred ccce
Confidence 9764
No 418
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.36 E-value=8.5e-13 Score=111.26 Aligned_cols=122 Identities=13% Similarity=0.030 Sum_probs=79.8
Q ss_pred CccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHH
Q 025114 39 DEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKET 118 (257)
Q Consensus 39 ~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~ 118 (257)
.+..+.+|++|++.. |++++|+||||+||||++|++++..- .. .. |..+....... ...+
T Consensus 14 ~~~~v~~~~~~~~~~---~~~~~l~G~n~~GKstll~~i~~~~~---------la-~~-G~~vpa~~~~l------~~~d 73 (204)
T cd03282 14 KKNFIPNDIYLTRGS---SRFHIITGPNMSGKSTYLKQIALLAI---------MA-QI-GCFVPAEYATL------PIFN 73 (204)
T ss_pred CCcEEEeeeEEeeCC---CcEEEEECCCCCCHHHHHHHHHHHHH---------HH-Hc-CCCcchhhcCc------cChh
Confidence 355789999999998 99999999999999999999997641 00 11 11111000000 0011
Q ss_pred HHHHHhccc---CccccccChhHhHHHHHHHHhhCCcEEEEECCHHHH------------HHHHHhcCCCCccccCC
Q 025114 119 EVLQKLSLM---RQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEAL------------AQRIAAVGTDSRPLLHQ 180 (257)
Q Consensus 119 ~~l~~l~~~---~~~v~~lsgG~~qr~~~a~~l~~~~vl~LDep~~~L------------~~rl~~~g~~~~~~~h~ 180 (257)
+++..++.. .+....+|+|+++...+.+...++.+++||||+.++ ++.+...+.+++.++|+
T Consensus 74 ~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~ 150 (204)
T cd03282 74 RLLSRLSNDDSMERNLSTFASEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHF 150 (204)
T ss_pred heeEecCCccccchhhhHHHHHHHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCh
Confidence 222333332 245667888888766555655579999999994332 45666668889999998
No 419
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.33 E-value=3.8e-12 Score=108.01 Aligned_cols=141 Identities=13% Similarity=0.079 Sum_probs=79.0
Q ss_pred ccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCce---ecc---hhhhhhc---------CCCCCHHHHHHHh
Q 025114 44 LKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSF---FDC---DTLIEQS---------VDGTSVAEIFKLY 108 (257)
Q Consensus 44 l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~---~d~---~~~~~~~---------~~~~~v~e~~~~~ 108 (257)
++++++++.+ | +.+|+|+||||||||+..|.-.++... ... +.++... +........+...
T Consensus 14 ~~~~~i~~~~---g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~n~ 89 (213)
T cd03277 14 YDETEFRPGP---S-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGNIQVDNL 89 (213)
T ss_pred cceeEEecCC---C-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCCccccCCc
Confidence 4556677665 5 678999999999999999987774311 011 1111000 0000000000000
Q ss_pred CchHHHHH--------HHHHHHHhcc----cCccccccChhHhHHHHHHHHh-----hCCcEEEEECCHHHH--------
Q 025114 109 GEGFFREK--------ETEVLQKLSL----MRQLVVSTGGGAVTRPINWRYM-----QKGISVWLDVPLEAL-------- 163 (257)
Q Consensus 109 g~~~~~~~--------~~~~l~~l~~----~~~~v~~lsgG~~qr~~~a~~l-----~~~~vl~LDep~~~L-------- 163 (257)
.....+.. ..+.+..+.. ....+..||+|++|+..++.++ .+|+++++|||++++
T Consensus 90 ~~~~~q~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i 169 (213)
T cd03277 90 CQFLPQDRVGEFAKLSPIELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKV 169 (213)
T ss_pred eEEEchHHHHHHHhCChHhHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHH
Confidence 00000111 1233322221 1256789999999988777543 379999999999988
Q ss_pred ---HHHHHhc-C-CCCccccCCCCCCchhh
Q 025114 164 ---AQRIAAV-G-TDSRPLLHQCESGDAYT 188 (257)
Q Consensus 164 ---~~rl~~~-g-~~~~~~~h~~~~~~~~~ 188 (257)
+.++... | .+++.++|++.....++
T Consensus 170 ~~~l~~~~~~~g~~~viiith~~~~~~~~~ 199 (213)
T cd03277 170 FDMLVETACKEGTSQYFLITPKLLPGLNYH 199 (213)
T ss_pred HHHHHHHhhcCCCceEEEEchhhccCCccc
Confidence 2333333 4 35788899876665554
No 420
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.32 E-value=8.9e-12 Score=130.68 Aligned_cols=64 Identities=14% Similarity=0.011 Sum_probs=54.6
Q ss_pred HHHHHHhcccC----ccccccChhHhHHHHHHHHhhC----CcEEEEECCHHHH-----------HHHHHhcCCCCcccc
Q 025114 118 TEVLQKLSLMR----QLVVSTGGGAVTRPINWRYMQK----GISVWLDVPLEAL-----------AQRIAAVGTDSRPLL 178 (257)
Q Consensus 118 ~~~l~~l~~~~----~~v~~lsgG~~qr~~~a~~l~~----~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~ 178 (257)
-+.|..+|+.. ++...||||+.||..+|..|.. +.+++|||||.+| +++|...|.+++++.
T Consensus 1680 L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivie 1759 (1809)
T PRK00635 1680 LQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYID 1759 (1809)
T ss_pred HHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 35677888865 8899999999999999987752 5799999999998 677888899999999
Q ss_pred CCC
Q 025114 179 HQC 181 (257)
Q Consensus 179 h~~ 181 (257)
||+
T Consensus 1760 H~~ 1762 (1809)
T PRK00635 1760 HDP 1762 (1809)
T ss_pred CCH
Confidence 994
No 421
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.30 E-value=2.5e-12 Score=109.82 Aligned_cols=122 Identities=13% Similarity=0.064 Sum_probs=81.9
Q ss_pred CccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHH
Q 025114 39 DEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKET 118 (257)
Q Consensus 39 ~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~ 118 (257)
+...+.+|++++... +++++|.||||+||||++|.++-.. +. ... |..+..-. .. + ....
T Consensus 15 ~~~~v~~~~~~~~~~---~~~~~l~G~n~~GKstll~~i~~~~---------~l-a~~-g~~vpa~~---~~--~-~~~~ 74 (222)
T cd03285 15 DVAFIPNDVTLTRGK---SRFLIITGPNMGGKSTYIRQIGVIV---------LM-AQI-GCFVPCDS---AD--I-PIVD 74 (222)
T ss_pred CCCeEEeeEEEeecC---CeEEEEECCCCCChHHHHHHHHHHH---------HH-HHh-CCCcCccc---EE--E-eccc
Confidence 345689999999988 9999999999999999999998421 00 000 11000000 00 0 0122
Q ss_pred HHHHHhcccCccccccChhHhHHHHHHHHh---hCCcEEEEECC---HHHH---------HHHHHh-cCCCCccccCC
Q 025114 119 EVLQKLSLMRQLVVSTGGGAVTRPINWRYM---QKGISVWLDVP---LEAL---------AQRIAA-VGTDSRPLLHQ 180 (257)
Q Consensus 119 ~~l~~l~~~~~~v~~lsgG~~qr~~~a~~l---~~~~vl~LDep---~~~L---------~~rl~~-~g~~~~~~~h~ 180 (257)
+++.++++.+.....+|.|+.++..+++++ .+|.+++|||| |+.+ ++.+.+ .+.+++.++|+
T Consensus 75 ~il~~~~l~d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~ 152 (222)
T cd03285 75 CILARVGASDSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHF 152 (222)
T ss_pred eeEeeeccccchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEech
Confidence 345556665555677899999888888766 36999999999 6666 345543 36778888996
No 422
>PRK09169 hypothetical protein; Validated
Probab=99.29 E-value=3.7e-11 Score=125.56 Aligned_cols=150 Identities=15% Similarity=0.050 Sum_probs=121.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccCccccccCh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGG 136 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~~lsg 136 (257)
+..++|+|++|+||||+++.|++.++..|+|.|..++... +++|.++|...| .|++.+.+.+..+.. ...|.+++|
T Consensus 2110 ~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks~-GrkI~rIFa~eG--~FRe~Eaa~V~Dllr-~~vVLSTGG 2185 (2316)
T PRK09169 2110 AQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKKI-GKKIARIQALRG--LSPEQAAARVRDALR-WEVVLPAEG 2185 (2316)
T ss_pred hcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHHh-CCCHHHHHHhcC--chHHHHHHHHHHHhc-CCeEEeCCC
Confidence 6789999999999999999999999999999999999998 999999999988 899999888877554 678999999
Q ss_pred hHhHHHHHHHHhh-CCcEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcc-ccee
Q 025114 137 GAVTRPINWRYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANA-NARV 212 (257)
Q Consensus 137 G~~qr~~~a~~l~-~~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~-~~~~ 212 (257)
|......+...|. ++.++||+.+...+.+|+.. | ..+|++...+...+....-..+..+++.|...|... +..+
T Consensus 2186 Gav~~~enr~~L~~~GlvV~L~an~~tl~~Rty~-g-~NRPLL~~~~~~FEiQFHT~esl~Lk~eRhpLYEqvADl~V 2261 (2316)
T PRK09169 2186 FGAAVEQARQALGAKGLRVMRINNGFAAPDTTYA-G-LNVNLRTAAGLDFEIQFHTADSLRTKNKTHKLYEKLQDLEV 2261 (2316)
T ss_pred CcccCHHHHHHHHHCCEEEEEECCHHHHHHHhcc-C-CCCccccCCCCccchhccHHHHHHHHHHhHHHHHHhcCccc
Confidence 9999999998886 69999999999999999864 3 346776542221111111144556778999999774 4433
No 423
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.27 E-value=1.1e-11 Score=104.23 Aligned_cols=37 Identities=24% Similarity=0.246 Sum_probs=30.7
Q ss_pred ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 40 EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 40 ~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
++.+++|++|+ . |++++|+||||||||||+|+|++..
T Consensus 13 ~~~v~n~i~l~--~---g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 13 EKRVANDIDME--K---KNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred CCeecceEEEc--C---CcEEEEECCCCCChHHHHHHHHHHH
Confidence 34577777665 4 7899999999999999999999854
No 424
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.25 E-value=3.1e-12 Score=107.54 Aligned_cols=111 Identities=11% Similarity=0.060 Sum_probs=67.2
Q ss_pred cccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh-----CCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHH
Q 025114 45 KNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL-----GYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETE 119 (257)
Q Consensus 45 ~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l-----g~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~ 119 (257)
-..|+++.. |++++|+|||||||||++|+|++.. |.. +.... ... +. . .+
T Consensus 20 ~~~~~~l~~---~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~-~~~~~---~~i-~~--------~---------dq 74 (202)
T cd03243 20 VPNDINLGS---GRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCF-VPAES---ASI-PL--------V---------DR 74 (202)
T ss_pred EeeeEEEcC---CeEEEEECCCCCccHHHHHHHHHHHHHHHcCCC-ccccc---ccc-CC--------c---------CE
Confidence 345666777 9999999999999999999999543 111 00000 000 00 0 00
Q ss_pred HHHHhccc---CccccccChhHhHHHHHHHHhhCCcEEEEECCHHHH------------HHHHHhcCCCCccccCC
Q 025114 120 VLQKLSLM---RQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEAL------------AQRIAAVGTDSRPLLHQ 180 (257)
Q Consensus 120 ~l~~l~~~---~~~v~~lsgG~~qr~~~a~~l~~~~vl~LDep~~~L------------~~rl~~~g~~~~~~~h~ 180 (257)
++..+... ......++.++++...+...+.+|.++++|||++++ ++.+...+.+++.++|+
T Consensus 75 i~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~ 150 (202)
T cd03243 75 IFTRIGAEDSISDGRSTFMAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHF 150 (202)
T ss_pred EEEEecCcccccCCceeHHHHHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECCh
Confidence 01111111 134455666677655555556689999999997765 23333447788889998
No 425
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.17 E-value=9.5e-11 Score=96.76 Aligned_cols=122 Identities=18% Similarity=0.085 Sum_probs=68.5
Q ss_pred ccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC-Cceecc-hhhhhhcCCCCCHHHHHHHhCch------HHHH
Q 025114 44 LKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG-YSFFDC-DTLIEQSVDGTSVAEIFKLYGEG------FFRE 115 (257)
Q Consensus 44 l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg-~~~~d~-~~~~~~~~~~~~v~e~~~~~g~~------~~~~ 115 (257)
+.+..+...+ +.+.+|+||||||||+++..|.-.++ ..+... +..... . .+..+ .+.. .|..
T Consensus 12 ~~~~~~~~~~---~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~-~-----~~~~~-~~~~~~~v~~~f~~ 81 (178)
T cd03239 12 YRDETVVGGS---NSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFL-A-----GGGVK-AGINSASVEITFDK 81 (178)
T ss_pred CCCCEEecCC---CceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhh-c-----ccccC-CCCceEEEEEEEEC
Confidence 3444455444 33899999999999999999976553 211110 000000 0 00000 0000 0000
Q ss_pred HHHHHHHHhcccCccccccChhHhHHHHHHHHh-----hCCcEEEEECCHHHH-----------HHHHHhcCCCCccccC
Q 025114 116 KETEVLQKLSLMRQLVVSTGGGAVTRPINWRYM-----QKGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLH 179 (257)
Q Consensus 116 ~~~~~l~~l~~~~~~v~~lsgG~~qr~~~a~~l-----~~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h 179 (257)
. +. +-.....-.-+|+|++++..+++++ .+|+++++|||++++ +.++...|.+++.++|
T Consensus 82 ~----~~-~~~~~~~~~~LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 82 S----YF-LVLQGKVEQILSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred c----eE-EecCCcCcccCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 0 00 0011111111999999999999876 369999999999887 3333334577888889
Q ss_pred C
Q 025114 180 Q 180 (257)
Q Consensus 180 ~ 180 (257)
+
T Consensus 157 ~ 157 (178)
T cd03239 157 K 157 (178)
T ss_pred C
Confidence 8
No 426
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.15 E-value=3.5e-11 Score=97.76 Aligned_cols=113 Identities=17% Similarity=0.074 Sum_probs=68.2
Q ss_pred cccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHHHHHHh
Q 025114 45 KNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKL 124 (257)
Q Consensus 45 ~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l 124 (257)
...++.+.. +.++.|+|||||||||+++.+.-.++...-.....-+... +..+... ...+
T Consensus 12 ~~~~i~~~~---~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~-g~~~~~~-----~~~~----------- 71 (162)
T cd03227 12 VPNDVTFGE---GSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKA-GCIVAAV-----SAEL----------- 71 (162)
T ss_pred eccEEecCC---CCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccC-CCcceee-----EEEE-----------
Confidence 344555555 6699999999999999999988665321100000000000 1100000 0000
Q ss_pred cccCccccccChhHhHHHHHHHHhh-----CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCC
Q 025114 125 SLMRQLVVSTGGGAVTRPINWRYMQ-----KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQ 180 (257)
Q Consensus 125 ~~~~~~v~~lsgG~~qr~~~a~~l~-----~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~ 180 (257)
-.....+|+|++++..+++++. +|.++++|||+.++ +.+....+.+++.++|+
T Consensus 72 ---i~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~ 140 (162)
T cd03227 72 ---IFTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHL 140 (162)
T ss_pred ---ehheeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 0122459999999999998774 57999999999887 23332235677888998
No 427
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.12 E-value=2.4e-11 Score=122.68 Aligned_cols=167 Identities=23% Similarity=0.250 Sum_probs=116.3
Q ss_pred cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC-------Cceecchhhhhh--------------cCCCC
Q 025114 41 AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG-------YSFFDCDTLIEQ--------------SVDGT 99 (257)
Q Consensus 41 ~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg-------~~~~d~~~~~~~--------------~~~~~ 99 (257)
..+|+|+|.-+++ |+.+.++||+|||||||+|.|+|.+. .+.+++.+.-+. .++.+
T Consensus 128 ~~il~~~sg~~~p---g~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKP---GEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcC---CceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEecccccccccee
Confidence 4699999999999 99999999999999999999999772 233333332111 11234
Q ss_pred CHHHHHHHh----Cc-----hHH-HH----HHHHHHHHhcccC--------ccccccChhHhHHHHHHHHhh-CCcEEEE
Q 025114 100 SVAEIFKLY----GE-----GFF-RE----KETEVLQKLSLMR--------QLVVSTGGGAVTRPINWRYMQ-KGISVWL 156 (257)
Q Consensus 100 ~v~e~~~~~----g~-----~~~-~~----~~~~~l~~l~~~~--------~~v~~lsgG~~qr~~~a~~l~-~~~vl~L 156 (257)
|+.+-+... +. +.- ++ ..+.+++.+|+.+ ..+.-.||||+.|+.++..+. .+.+++.
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeee
Confidence 444332221 11 011 11 2346788888864 567788999999999998776 7899999
Q ss_pred ECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 157 DVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 157 Dep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
||++.+| ++.++.. +.+..+..++. ..+..+.+|.+..|++|+.+.+|+.++++
T Consensus 285 De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~--s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~ 350 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALRQLAHITGATALVSILQP--SPEIYDLFDDVILLSEGYQIYQGPRDEVL 350 (1391)
T ss_pred ecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccC--ChHHHHhhhheeeeeccceEEeccHHHHH
Confidence 9999998 3444332 55666666663 23333557999999999999999887665
No 428
>PRK03839 putative kinase; Provisional
Probab=99.11 E-value=5.7e-10 Score=91.89 Aligned_cols=153 Identities=22% Similarity=0.221 Sum_probs=87.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccCccccccChhH
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGA 138 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~~lsgG~ 138 (257)
+++|+|++||||||+++.|+..++.++++.++++.... +.+.+...++..|+..+..+.+.+. ...+.. .|.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~--~~~vIi-dG~- 73 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKG----IGEEKDDEMEIDFDKLAYFIEEEFK--EKNVVL-DGH- 73 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcC----CcccCChhhhcCHHHHHHHHHHhcc--CCCEEE-Eec-
Confidence 58999999999999999999999999999998765431 2222222233345555555444321 222222 221
Q ss_pred hHHHHHHHHhhC-CcEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecchhh
Q 025114 139 VTRPINWRYMQK-GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENI 217 (257)
Q Consensus 139 ~qr~~~a~~l~~-~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~~l 217 (257)
...+.+ ..+++|+.|.+.+.+|+..++.. ++...+ .. ..++..+. ....|.....++
T Consensus 74 ------~~~l~~~~~vi~L~~~~~~~~~Rl~~R~~~-~~~~~~-----~~---~~~~~~~~--~~~~~~~r~~~~----- 131 (180)
T PRK03839 74 ------LSHLLPVDYVIVLRAHPKIIKERLKERGYS-KKKILE-----NV---EAELVDVC--LCEALEEKEKVI----- 131 (180)
T ss_pred ------cccccCCCEEEEEECCHHHHHHHHHHcCCC-HHHHHH-----HH---HHHHHHHH--HHHHHHhcCCEE-----
Confidence 112233 45789999999999999865421 111110 00 01111110 011122212222
Q ss_pred hhhccccCCCCCCHHHHHHHHHHHHHhhh
Q 025114 218 AVKLGHKDVSSLTPVTIAIEALEQIEGFL 246 (257)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~i~~~i~~~~ 246 (257)
.+++++.++++++.+|.+.+..-.
T Consensus 132 -----~Id~~~~s~eev~~~I~~~l~~~~ 155 (180)
T PRK03839 132 -----EVDTTGKTPEEVVEEILELIKSGK 155 (180)
T ss_pred -----EEECCCCCHHHHHHHHHHHHhcCC
Confidence 245666899999999998887543
No 429
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.09 E-value=2.6e-09 Score=101.03 Aligned_cols=56 Identities=20% Similarity=0.309 Sum_probs=49.9
Q ss_pred eeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhh
Q 025114 34 VHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIE 93 (257)
Q Consensus 34 l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~ 93 (257)
+...+|+...++|+.+.+ + +.+++|.||+||||||+++.|+..+|+.++|.+.+..
T Consensus 265 ~A~~~g~~RLIDN~~~~~-~---~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR 320 (512)
T PRK13477 265 IAVRCGSTRLIDNVFLMK-R---QPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYR 320 (512)
T ss_pred EEEEeCCeEEEeeeEecc-C---CcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceeh
Confidence 456779999999999988 5 8999999999999999999999999999999876643
No 430
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.09 E-value=2.3e-09 Score=88.30 Aligned_cols=112 Identities=20% Similarity=0.273 Sum_probs=63.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhh-----cCCCCCHHHHHHHhCchHHHHHHHHHHHHh-cccC
Q 025114 55 LSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQ-----SVDGTSVAEIFKLYGEGFFREKETEVLQKL-SLMR 128 (257)
Q Consensus 55 ~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~-----~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l-~~~~ 128 (257)
|.|++++|+|+|||||||+++.|+++++..+++++.+... ...+....+- ....+.....+....+ ....
T Consensus 1 ~~ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 76 (176)
T PRK09825 1 MAGESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQGIPLTDE----DRLPWLERLNDASYSLYKKNE 76 (176)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHhcCCCCCcc----cchHHHHHHHHHHHHHHhcCC
Confidence 4599999999999999999999999999999999875211 0011111110 0001111222222111 1112
Q ss_pred ccccccChhHh-HHHHHHHHhhCCcEEEEECCHHHHHHHHHhc
Q 025114 129 QLVVSTGGGAV-TRPINWRYMQKGISVWLDVPLEALAQRIAAV 170 (257)
Q Consensus 129 ~~v~~lsgG~~-qr~~~a~~l~~~~vl~LDep~~~L~~rl~~~ 170 (257)
..+..+|.-.. .|.........-.++||+.|.+.+.+|+..+
T Consensus 77 ~g~iv~s~~~~~~R~~~r~~~~~~~~v~l~a~~~~l~~Rl~~R 119 (176)
T PRK09825 77 TGFIVCSSLKKQYRDILRKSSPNVHFLWLDGDYETILARMQRR 119 (176)
T ss_pred CEEEEEEecCHHHHHHHHhhCCCEEEEEEeCCHHHHHHHHhcc
Confidence 22222443222 2322222222346889999999999999876
No 431
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.04 E-value=1.9e-10 Score=86.73 Aligned_cols=46 Identities=17% Similarity=0.080 Sum_probs=39.9
Q ss_pred cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCceecchhh
Q 025114 41 AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTL 91 (257)
Q Consensus 41 ~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~ 91 (257)
+.+|++++|++.+ |++++|+||||||||||++++. -|...++++++
T Consensus 2 ~~aL~~vsl~i~~---ge~v~I~GpSGsGKSTLl~~l~--~G~i~~~g~di 47 (107)
T cd00820 2 TTSLHGVLVDVYG---KVGVLITGDSGIGKTELALELI--KRKHRLVGDDN 47 (107)
T ss_pred ceEEEeeEEEEcC---CEEEEEEcCCCCCHHHHHHHhh--CCeEEEeeEeH
Confidence 5689999999999 9999999999999999999998 45566666654
No 432
>PRK14532 adenylate kinase; Provisional
Probab=99.04 E-value=1.1e-08 Score=84.83 Aligned_cols=165 Identities=19% Similarity=0.210 Sum_probs=94.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCC-----CCCHHHHHHHhCchHHHHHHHHHHHH-hcccC---c
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVD-----GTSVAEIFKLYGEGFFREKETEVLQK-LSLMR---Q 129 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~-----~~~v~e~~~~~g~~~~~~~~~~~l~~-l~~~~---~ 129 (257)
.+.|+||+||||||+.+.|+..+|..+++.++++..... +..+.+++. .|+..+.+...+++.. +.... .
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~g 80 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMD-RGELVSDEIVIALIEERLPEAEAAGG 80 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHH-CCCccCHHHHHHHHHHHHhCcCccCc
Confidence 478999999999999999999999999999887765321 223444454 3443344333333322 21111 1
Q ss_pred cc-cccChhHhHHHHHHHHhh----CC-cEEEEECCHHHHHHHHHhcCC-CCccccCCCCCCchhhHHHHHHHHHHHHHH
Q 025114 130 LV-VSTGGGAVTRPINWRYMQ----KG-ISVWLDVPLEALAQRIAAVGT-DSRPLLHQCESGDAYTEALNRLSTLWEERG 202 (257)
Q Consensus 130 ~v-~~lsgG~~qr~~~a~~l~----~~-~vl~LDep~~~L~~rl~~~g~-~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~ 202 (257)
.+ ........|...+...+. .| .+++||.|.+.+.+|+..+.. ..++ .+ ....+ ..++...+..+.
T Consensus 81 ~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~--dd--~~~~~---~~Rl~~~~~~~~ 153 (188)
T PRK14532 81 AIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRP--DD--NPEVF---VTRLDAYNAQTA 153 (188)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCC--CC--CHHHH---HHHHHHHHHHHH
Confidence 11 112223344444444442 34 488999999999999986532 1121 11 11111 255555555553
Q ss_pred ---HHHhcccceecchhhhhhccccCC-CCCCHHHHHHHHHHHHH
Q 025114 203 ---EAYANANARVSLENIAVKLGHKDV-SSLTPVTIAIEALEQIE 243 (257)
Q Consensus 203 ---~~y~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~i~~~i~ 243 (257)
..|......+ .+ ...+++++..+|...|.
T Consensus 154 ~i~~~y~~~~~~~------------~id~~~~~eev~~~I~~~l~ 186 (188)
T PRK14532 154 PLLPYYAGQGKLT------------EVDGMGSIEAVAASIDAALE 186 (188)
T ss_pred HHHHHHHhcCCEE------------EEECCCCHHHHHHHHHHHHh
Confidence 3454443333 23 23799999998887775
No 433
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.04 E-value=5.2e-10 Score=101.72 Aligned_cols=140 Identities=22% Similarity=0.219 Sum_probs=87.4
Q ss_pred cccccccceEecC--CCCCcEEEEEcCCCChHHHHHHHHHhhhCCceecchh-----hhhhcC---CCCCHHHHHHHhCc
Q 025114 41 AQVLKNKSQEIEP--YLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDT-----LIEQSV---DGTSVAEIFKLYGE 110 (257)
Q Consensus 41 ~~~l~~isl~i~~--~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~-----~~~~~~---~~~~v~e~~~~~g~ 110 (257)
+.-+-+..|.|.. |.+.++++.+|.||.||||+++++||.+.+..-..-. +..+.+ ..-++..++...-+
T Consensus 349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr 428 (592)
T KOG0063|consen 349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIR 428 (592)
T ss_pred eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhH
Confidence 4456677777766 4445789999999999999999999977432110000 001111 12345555543222
Q ss_pred hHH--HHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhhC-CcEEEEECCHHHHH--HHHHhcCCCCccccCC
Q 025114 111 GFF--REKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQK-GISVWLDVPLEALA--QRIAAVGTDSRPLLHQ 180 (257)
Q Consensus 111 ~~~--~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~~-~~vl~LDep~~~L~--~rl~~~g~~~~~~~h~ 180 (257)
..+ ..-..++++-|.+.+ +.+..||||+.||++++-.+-. .++.+.|||.+-|+ +|+.......|.++|.
T Consensus 429 ~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilha 506 (592)
T KOG0063|consen 429 DAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHA 506 (592)
T ss_pred hhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhc
Confidence 211 112345555555543 8899999999999999988864 78999999999883 4443222234555665
No 434
>PRK13975 thymidylate kinase; Provisional
Probab=99.02 E-value=4.6e-09 Score=87.38 Aligned_cols=169 Identities=21% Similarity=0.273 Sum_probs=87.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCC--ceecchhhhhhc----C-----CCCCHHHHHHHhCchHHHHHHHHHHHHhc
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGY--SFFDCDTLIEQS----V-----DGTSVAEIFKLYGEGFFREKETEVLQKLS 125 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~--~~~d~~~~~~~~----~-----~~~~v~e~~~~~g~~~~~~~~~~~l~~l~ 125 (257)
|.+|+|.|+.||||||+.+.|+..++. .+.+.+...... . .+.++..+|...+...++..+..+.+..-
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~~~~~~~~v 81 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIEEDLKKRDV 81 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeeECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 568999999999999999999999873 334433222111 1 11223333333333333332222222212
Q ss_pred ccCccccc-----cChhHhHHHH--HHHHhhCC-cEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHH
Q 025114 126 LMRQLVVS-----TGGGAVTRPI--NWRYMQKG-ISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTL 197 (257)
Q Consensus 126 ~~~~~v~~-----lsgG~~qr~~--~a~~l~~~-~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l 197 (257)
+.++.+.+ .++|...... ..+.+..| .+++||.|.+.+.+|+..++ ++.... ..+ ..++...
T Consensus 82 i~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~---~~~~~~----~~~---~~~~~~~ 151 (196)
T PRK13975 82 VCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRD---KEIFEK----KEF---LKKVQEK 151 (196)
T ss_pred EEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccC---ccccch----HHH---HHHHHHH
Confidence 23333322 2333222111 11222244 57899999999999998654 222111 111 1445455
Q ss_pred HHHHHHH--HhcccceecchhhhhhccccCCCCCCHHHHHHHHHHHHHhh
Q 025114 198 WEERGEA--YANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGF 245 (257)
Q Consensus 198 ~~~r~~~--y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~ 245 (257)
+...... |.+....+ .++++..++++++.+|.+.|...
T Consensus 152 y~~~~~~~~~~~~~~~~----------~Id~~~~~~eev~~~I~~~i~~~ 191 (196)
T PRK13975 152 YLELANNEKFMPKYGFI----------VIDTTNKSIEEVFNEILNKIKDK 191 (196)
T ss_pred HHHHHhhcccCCcCCEE----------EEECCCCCHHHHHHHHHHHHHHh
Confidence 5444331 11111111 24566789999999888877654
No 435
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.00 E-value=8e-09 Score=83.54 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=60.7
Q ss_pred EEEEcCCCChHHHHHHHHHhhhCCceecchhhhhh-----cCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccCcccccc
Q 025114 60 IYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQ-----SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVST 134 (257)
Q Consensus 60 i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~-----~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~~l 134 (257)
++|+||+||||||+++.|++.++..++++|.+... ...+.+..+ .....+++.....+...+......+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~Vi~~ 77 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLND---DDRWPWLQNLNDASTAAAAKNKVGIITC 77 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCCh---hhHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 46999999999999999999999999999886321 111221111 0111233332222222222222224444
Q ss_pred ChhHhHHHHHHHHh-hCCcEEEEECCHHHHHHHHHhcC
Q 025114 135 GGGAVTRPINWRYM-QKGISVWLDVPLEALAQRIAAVG 171 (257)
Q Consensus 135 sgG~~qr~~~a~~l-~~~~vl~LDep~~~L~~rl~~~g 171 (257)
+-.....-..++.. ....+++|+.|.+.+.+|++.++
T Consensus 78 t~~~~~~r~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~ 115 (163)
T TIGR01313 78 SALKRHYRDILREAEPNLHFIYLSGDKDVILERMKARK 115 (163)
T ss_pred cccHHHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHhcc
Confidence 42221111111111 12356899999999999998653
No 436
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.99 E-value=1.5e-09 Score=89.09 Aligned_cols=156 Identities=21% Similarity=0.170 Sum_probs=87.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhC-----CceecchhhhhhcC-CCCCHHHHHHHhCchHHHHHHHHHHHHhcccCcc
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLG-----YSFFDCDTLIEQSV-DGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQL 130 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg-----~~~~d~~~~~~~~~-~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~ 130 (257)
|.+++|+|++||||||+++.|+..+. ..++++|.+.+... .+.+... ......+...+.+.+......
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~~~~~~~~~------~~~~~~~~~~l~~~l~~~g~~ 80 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILGHYGYDKQS------RIEMALKRAKLAKFLADQGMI 80 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcCCCCCCHHH------HHHHHHHHHHHHHHHHhCCCE
Confidence 88999999999999999999998884 56777776533111 0111000 000001111111222222345
Q ss_pred ccccChhHhH--HHHHHHHhhCCcEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhc-
Q 025114 131 VVSTGGGAVT--RPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN- 207 (257)
Q Consensus 131 v~~lsgG~~q--r~~~a~~l~~~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~- 207 (257)
|+..+++... +..+..++....++|||.|.+.+.+|+.. ++.... ..+.+..++..|.+.|..
T Consensus 81 VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~------~l~~~~--------~~~~~~~~~~~~~~~~~~~ 146 (176)
T PRK05541 81 VIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQK------GLYTKA--------LKGEIKNVVGVDIPFDEPK 146 (176)
T ss_pred EEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhchh------hHHHHH--------HcCcccccccCCCcccCCC
Confidence 6666666432 22222333334678999999999999752 111000 002233455566666654
Q ss_pred ccceecchhhhhhccccCCCC-CCHHHHHHHHHHHHHh
Q 025114 208 ANARVSLENIAVKLGHKDVSS-LTPVTIAIEALEQIEG 244 (257)
Q Consensus 208 ~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~i~~~i~~ 244 (257)
++.++ ++++ .++++.+++++..++.
T Consensus 147 Ad~vI------------~~~~~~~~~~~v~~i~~~l~~ 172 (176)
T PRK05541 147 ADLVI------------DNSCRTSLDEKVDLILNKLKL 172 (176)
T ss_pred CCEEE------------eCCCCCCHHHHHHHHHHHHHH
Confidence 44444 4454 5999999988888754
No 437
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.99 E-value=8.1e-09 Score=84.80 Aligned_cols=114 Identities=26% Similarity=0.258 Sum_probs=60.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCc----eecchh-----hhhhcCCCCCHHHHHHHhCchHH----HH-----HHH
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYS----FFDCDT-----LIEQSVDGTSVAEIFKLYGEGFF----RE-----KET 118 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~----~~d~~~-----~~~~~~~~~~v~e~~~~~g~~~~----~~-----~~~ 118 (257)
|++++|+||||||||||++.|++.++.. +..... .....+...+..++........| .. -..
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 80 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIP 80 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccCh
Confidence 5789999999999999999999987531 110000 00001112333343332111100 00 000
Q ss_pred HHHHHhcccCccccccChhHhHHHHHHHHhhCCcEEEEECCHHHHHHHHHhcC
Q 025114 119 EVLQKLSLMRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVG 171 (257)
Q Consensus 119 ~~l~~l~~~~~~v~~lsgG~~qr~~~a~~l~~~~vl~LDep~~~L~~rl~~~g 171 (257)
..+...-..+..+...++++.. ..+...+.+..++|||.|.+.+.+|+..++
T Consensus 81 ~~i~~~~~~g~~vv~~g~~~~~-~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~ 132 (179)
T TIGR02322 81 AEIDQWLEAGDVVVVNGSRAVL-PEARQRYPNLLVVNITASPDVLAQRLAARG 132 (179)
T ss_pred HHHHHHHhcCCEEEEECCHHHH-HHHHHHCCCcEEEEEECCHHHHHHHHHHcC
Confidence 0111111123455555555533 233344456788999999999999998653
No 438
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.99 E-value=2.2e-09 Score=89.99 Aligned_cols=156 Identities=19% Similarity=0.236 Sum_probs=86.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhh-----CCceecchhhhhhcCC--CCCHHHHHHHhCchHHHHHHHHHHHHhcccCc
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVL-----GYSFFDCDTLIEQSVD--GTSVAEIFKLYGEGFFREKETEVLQKLSLMRQ 129 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~l-----g~~~~d~~~~~~~~~~--~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~ 129 (257)
|.+++|+|+||||||||++.|++.+ +..++++|.+...... +....+. ...++. ..++...+.-...
T Consensus 24 ~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~~-----~~~~~~-l~~~a~~~~~~G~ 97 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDADR-----KENIRR-VGEVAKLMVDAGL 97 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCcccH-----HHHHHH-HHHHHHHHhhCCC
Confidence 8999999999999999999999986 3578888876433211 1111110 001111 1111111111122
Q ss_pred ccc-ccCh-hHhHHHHHHHHhhC-Cc-EEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHH
Q 025114 130 LVV-STGG-GAVTRPINWRYMQK-GI-SVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAY 205 (257)
Q Consensus 130 ~v~-~lsg-G~~qr~~~a~~l~~-~~-vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y 205 (257)
.+. .++. -...|..+..++.. +. ++||+.|.+.+.+|-. +++..... . +.+..+...|.+ |
T Consensus 98 ~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R~~------r~l~~~~~-~-------~~~~~l~~~r~~-Y 162 (198)
T PRK03846 98 VVLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEARDP------KGLYKKAR-A-------GEIRNFTGIDSV-Y 162 (198)
T ss_pred EEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhcCc------hhHHHHhh-c-------CCccCccccccc-C
Confidence 222 2222 13455555566653 54 6899999999888811 33222100 0 112223345555 7
Q ss_pred hcc--cceecchhhhhhccccCCCCCCHHHHHHHHHHHHHh
Q 025114 206 ANA--NARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEG 244 (257)
Q Consensus 206 ~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~ 244 (257)
..+ +.++ +++++.++++++++|++.+..
T Consensus 163 ~~p~~ad~~-----------Idt~~~~~~~vv~~Il~~l~~ 192 (198)
T PRK03846 163 EAPESPEIH-----------LDTGEQLVTNLVEQLLDYLRQ 192 (198)
T ss_pred CCCCCCCEE-----------EECCCCCHHHHHHHHHHHHHH
Confidence 632 2222 367789999999999988853
No 439
>PRK04182 cytidylate kinase; Provisional
Probab=98.99 E-value=2.6e-08 Score=81.40 Aligned_cols=157 Identities=25% Similarity=0.282 Sum_probs=88.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhh---cCCCCCHHHHHHHhCchHH--HHHHHHHHHHhcccCccccc
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQ---SVDGTSVAEIFKLYGEGFF--REKETEVLQKLSLMRQLVVS 133 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~---~~~~~~v~e~~~~~g~~~~--~~~~~~~l~~l~~~~~~v~~ 133 (257)
+|+|+|++||||||+++.|+..+|.++++.+++... .. +.++.++... ++..+ .......+..+......++-
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~-g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Vi 79 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKER-GMSLEEFNKY-AEEDPEIDKEIDRRQLEIAEKEDNVVL 79 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHc-CCCHHHHHHH-hhcCchHHHHHHHHHHHHHhcCCCEEE
Confidence 689999999999999999999999999996654332 33 6777766543 22221 11111222222211222221
Q ss_pred cChhHhHHHHHHHHhh--CCcEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHH----HHHh-
Q 025114 134 TGGGAVTRPINWRYMQ--KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERG----EAYA- 206 (257)
Q Consensus 134 lsgG~~qr~~~a~~l~--~~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~----~~y~- 206 (257)
.+.+.. ..+. ...+++|+.|.+.+.+|+..++. ++.. .+ ...+......+. ..|+
T Consensus 80 ~g~~~~------~~~~~~~~~~V~l~a~~e~~~~Rl~~r~~--~~~~----~a------~~~~~~~d~~~~~~~~~~~~~ 141 (180)
T PRK04182 80 EGRLAG------WMAKDYADLKIWLKAPLEVRAERIAEREG--ISVE----EA------LEETIEREESEAKRYKEYYGI 141 (180)
T ss_pred EEeecc------eEecCCCCEEEEEECCHHHHHHHHHhccC--CCHH----HH------HHHHHHHHHHHHHHHHHHhCC
Confidence 111000 0111 23678999999999999976431 1111 01 111111111121 2222
Q ss_pred ------cccceecchhhhhhccccCCCCCCHHHHHHHHHHHHHhhhc
Q 025114 207 ------NANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLK 247 (257)
Q Consensus 207 ------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 247 (257)
.++. +++++..+++++++.|.+.+.....
T Consensus 142 ~~~~~~~~d~------------~idt~~~~~~~~~~~I~~~~~~~~~ 176 (180)
T PRK04182 142 DIDDLSIYDL------------VINTSRWDPEGVFDIILTAIDKLLK 176 (180)
T ss_pred CccccccccE------------EEECCCCCHHHHHHHHHHHHHHHhc
Confidence 2232 3478889999999999999887654
No 440
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.98 E-value=5e-10 Score=95.22 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=32.6
Q ss_pred ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhh
Q 025114 40 EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 40 ~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
...+.+|++++.. .++++|+||||+||||++|.+++.
T Consensus 17 ~~~v~n~~~l~~~----~~~~~l~Gpn~sGKstllr~i~~~ 53 (216)
T cd03284 17 EPFVPNDTELDPE----RQILLITGPNMAGKSTYLRQVALI 53 (216)
T ss_pred CceEeeeEEecCC----ceEEEEECCCCCChHHHHHHHHHH
Confidence 4458999999988 489999999999999999999864
No 441
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.97 E-value=1.9e-08 Score=79.92 Aligned_cols=156 Identities=20% Similarity=0.229 Sum_probs=97.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhh-----hcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccCcccc
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIE-----QSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVV 132 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~-----~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~ 132 (257)
..++++|++||||||++++|+..+|+.|+|+|++.. +...|.++.+- ..+.|.......+...+...+..|.
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~GipLnD~---DR~pWL~~i~~~~~~~l~~~q~vVl 89 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGIPLNDD---DRWPWLKKIAVELRKALASGQGVVL 89 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcCCCCCcc---cccHHHHHHHHHHHHHhhcCCeEEE
Confidence 378999999999999999999999999999998742 22234433321 1123333333344445554557888
Q ss_pred ccChhHhHHHHHH-HHhh------CC----cEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHH
Q 025114 133 STGGGAVTRPINW-RYMQ------KG----ISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEER 201 (257)
Q Consensus 133 ~lsgG~~qr~~~a-~~l~------~~----~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r 201 (257)
+||.=-++.-.+. ..+. .| .+++|....+.+.+|+..+.. |.|.. .|++.+
T Consensus 90 ACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~g------HFMp~------------~lleSQ 151 (191)
T KOG3354|consen 90 ACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKG------HFMPA------------DLLESQ 151 (191)
T ss_pred EhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhccc------ccCCH------------HHHHHH
Confidence 8887655544443 3332 12 477899999999999986521 65431 223333
Q ss_pred HHHHhc--ccc--eecchhhhhhccccCCCCCCHHHHHHHHHHHHHh
Q 025114 202 GEAYAN--ANA--RVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEG 244 (257)
Q Consensus 202 ~~~y~~--~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~ 244 (257)
...-.. +++ +++ +++...+++++++.|.+.+..
T Consensus 152 f~~LE~p~~~e~div~----------isv~~~~~e~iv~tI~k~~~~ 188 (191)
T KOG3354|consen 152 FATLEAPDADEEDIVT----------ISVKTYSVEEIVDTIVKMVAL 188 (191)
T ss_pred HHhccCCCCCccceEE----------EeeccCCHHHHHHHHHHHHHh
Confidence 332222 222 443 355668899999888776653
No 442
>PRK14530 adenylate kinase; Provisional
Probab=98.96 E-value=4.4e-08 Score=83.04 Aligned_cols=111 Identities=22% Similarity=0.295 Sum_probs=66.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHh---------CchHHHHHHHHHHHHh-c
Q 025114 56 SGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLY---------GEGFFREKETEVLQKL-S 125 (257)
Q Consensus 56 ~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~---------g~~~~~~~~~~~l~~l-~ 125 (257)
.+..|+|+||+||||||+++.|+..+|..+++.++++.... +.++.+..... |.....+....++... .
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~-~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~ 80 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANK-QMDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALS 80 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhc-cCCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 36789999999999999999999999999999988877654 33332221111 1111112233333332 1
Q ss_pred ccCccccccChhHhHHHHHHHHh---hC-CcEEEEECCHHHHHHHHHhc
Q 025114 126 LMRQLVVSTGGGAVTRPINWRYM---QK-GISVWLDVPLEALAQRIAAV 170 (257)
Q Consensus 126 ~~~~~v~~lsgG~~qr~~~a~~l---~~-~~vl~LDep~~~L~~rl~~~ 170 (257)
.....+. +| -......+..+ .. ..+++||.|.+.+.+|+..+
T Consensus 81 ~~~~~Il--dG-~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R 126 (215)
T PRK14530 81 DADGFVL--DG-YPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGR 126 (215)
T ss_pred cCCCEEE--cC-CCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCC
Confidence 1122232 23 22211222222 23 46889999999999999754
No 443
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.96 E-value=7.4e-10 Score=109.84 Aligned_cols=131 Identities=15% Similarity=0.108 Sum_probs=80.5
Q ss_pred eEEecceeeeeCccccccccceEecCCCCC-cEEEEEcCCCChHHHHHHHHHhhh-----CCceecchhhhhhcCCCCCH
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSG-RCIYLVGMMGSGKTTVGKILSGVL-----GYSFFDCDTLIEQSVDGTSV 101 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~G-e~i~LiG~nGaGKSTLlk~Lag~l-----g~~~~d~~~~~~~~~~~~~v 101 (257)
.+.++++...+=...-.-.+|+++.. + ++++|+||||+||||++|.|++.. |.. +.... .. ...+
T Consensus 295 ~i~l~~~rhPll~~~~~vp~di~l~~---~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~-Vpa~~----~~-~~~~ 365 (771)
T TIGR01069 295 KIILENARHPLLKEPKVVPFTLNLKF---EKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIP-IPANE----HS-EIPY 365 (771)
T ss_pred CEEEccccCceecCCceEeceeEeCC---CceEEEEECCCCCCchHHHHHHHHHHHHHHhCCC-ccCCc----cc-cccc
Confidence 46666665533211112247888887 6 899999999999999999999872 211 11100 00 0010
Q ss_pred -HHHHHHhCchHHHHHHHHHHHHhcccCccccccChhHhHHHHHHHHhhCCcEEEEECCHHHH------------HHHHH
Q 025114 102 -AEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEAL------------AQRIA 168 (257)
Q Consensus 102 -~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~~lsgG~~qr~~~a~~l~~~~vl~LDep~~~L------------~~rl~ 168 (257)
..++...+. ...+ ...+..+|+++.+...+...+..+.+++||||+.++ ++.+.
T Consensus 366 ~d~i~~~i~~------~~si-------~~~LStfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~ 432 (771)
T TIGR01069 366 FEEIFADIGD------EQSI-------EQNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLL 432 (771)
T ss_pred hhheeeecCh------HhHH-------hhhhhHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 011110010 0111 134667899999888877666679999999998765 34555
Q ss_pred hcCCCCccccCC
Q 025114 169 AVGTDSRPLLHQ 180 (257)
Q Consensus 169 ~~g~~~~~~~h~ 180 (257)
..|..++.++|+
T Consensus 433 ~~g~~viitTH~ 444 (771)
T TIGR01069 433 KQNAQVLITTHY 444 (771)
T ss_pred hcCCEEEEECCh
Confidence 567788888998
No 444
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.95 E-value=1.5e-09 Score=104.47 Aligned_cols=153 Identities=21% Similarity=0.271 Sum_probs=94.3
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhhhCC------ceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHH-HHHHhcc
Q 025114 54 YLSGRCIYLVGMMGSGKTTVGKILSGVLGY------SFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETE-VLQKLSL 126 (257)
Q Consensus 54 ~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~------~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~-~l~~l~~ 126 (257)
+.+|.++.|+|++||||||+++.|+..++. .++|+|.+..... + +..|+..+.+ ..++++.
T Consensus 389 ~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~-g-----------e~~f~~~er~~~~~~l~~ 456 (568)
T PRK05537 389 HKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLS-S-----------ELGFSKEDRDLNILRIGF 456 (568)
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhcc-C-----------CCCCCHHHHHHHHHHHHH
Confidence 345999999999999999999999999986 8889986633222 1 1112221111 1111110
Q ss_pred -------cCc--cccccChhHhHHHHHHHHhhC-C--cEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHH
Q 025114 127 -------MRQ--LVVSTGGGAVTRPINWRYMQK-G--ISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRL 194 (257)
Q Consensus 127 -------~~~--~v~~lsgG~~qr~~~a~~l~~-~--~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v 194 (257)
... .+...+.....|..+..++.+ + .++||+.|.+.+.+|++. + +... . . .+.+
T Consensus 457 ~a~~v~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~rr-~-----Ll~~---~-~----~~~i 522 (568)
T PRK05537 457 VASEITKNGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRDRK-G-----LYAK---A-R----EGKI 522 (568)
T ss_pred HHHHHHhCCCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhccc-c-----cccc---c-h----hchh
Confidence 011 112223344556666766653 4 478999999999988642 1 2111 0 0 1445
Q ss_pred HHHHHHHHHHHh--cccceecchhhhhhccccCCCCCCHHHHHHHHHHHHHh
Q 025114 195 STLWEERGEAYA--NANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEG 244 (257)
Q Consensus 195 ~~l~~~r~~~y~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~ 244 (257)
..++..|...|. .++.++ +++..++++++++|++.|.+
T Consensus 523 ~~l~~~R~~yy~p~~Adl~I------------Dt~~~s~~eiv~~Il~~L~~ 562 (568)
T PRK05537 523 KGFTGISDPYEPPANPELVI------------DTTNVTPDECAHKILLYLEE 562 (568)
T ss_pred hccccccccccCCCCCcEEE------------ECCCCCHHHHHHHHHHHHHH
Confidence 566777777775 244443 67778999999999888764
No 445
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.93 E-value=5.7e-08 Score=79.99 Aligned_cols=169 Identities=15% Similarity=0.225 Sum_probs=86.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCC-----CHHHHHHHhCchHHHHHHHHHH-----HHhcc
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGT-----SVAEIFKLYGEGFFREKETEVL-----QKLSL 126 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~-----~v~e~~~~~g~~~~~~~~~~~l-----~~l~~ 126 (257)
..+++|+|++||||||+++.|+..+|...++.++++.....+. .+.+++.. +.........+.+ ..+..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~ 81 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMES-GDLVPLDTVLDLLKDAMVAALGT 81 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcccCc
Confidence 5689999999999999999999999988888877654432111 12222222 2111111111111 11111
Q ss_pred cCcccc-ccChhHhHHHHHHHHhhCCc-EEEEECCHHHHHHHHHhcCC-CCccccCCCCCCchhhHHHHHHHHHHHHHHH
Q 025114 127 MRQLVV-STGGGAVTRPINWRYMQKGI-SVWLDVPLEALAQRIAAVGT-DSRPLLHQCESGDAYTEALNRLSTLWEERGE 203 (257)
Q Consensus 127 ~~~~v~-~lsgG~~qr~~~a~~l~~~~-vl~LDep~~~L~~rl~~~g~-~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~ 203 (257)
....+. .......|...+...+..|+ +++||.|.+.+.+|+..++. ..++ + +....+ ..++...+..+.+
T Consensus 82 ~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~---d-~~~~~~---~~r~~~~~~~~~~ 154 (188)
T TIGR01360 82 SKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAETSGRV---D-DNEKTI---KKRLETYYKATEP 154 (188)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccccCCCC---C-CCHHHH---HHHHHHHHHhhHH
Confidence 111111 11112223333333333454 78999999999999976542 1111 1 111111 1455444444332
Q ss_pred H---HhcccceecchhhhhhccccCCCCCCHHHHHHHHHHHHHh
Q 025114 204 A---YANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEG 244 (257)
Q Consensus 204 ~---y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~ 244 (257)
. |.....++. ++ ...+++++...+...++.
T Consensus 155 ~~~~y~~~~~~~~----------id-~~~~~~~v~~~i~~~l~~ 187 (188)
T TIGR01360 155 VIAYYETKGKLRK----------IN-AEGTVDDVFLQVCTAIDK 187 (188)
T ss_pred HHHHHHhCCCEEE----------EE-CCCCHHHHHHHHHHHHhc
Confidence 2 332222221 22 347899999888877753
No 446
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.89 E-value=7.9e-10 Score=91.72 Aligned_cols=100 Identities=12% Similarity=0.028 Sum_probs=59.6
Q ss_pred EEEEcCCCChHHHHHHHHHhhh-----CCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC---ccc
Q 025114 60 IYLVGMMGSGKTTVGKILSGVL-----GYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR---QLV 131 (257)
Q Consensus 60 i~LiG~nGaGKSTLlk~Lag~l-----g~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~---~~v 131 (257)
++|.||||+||||++|.++-.. |... ..+.. ...+ ..+++..++..+ +..
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v-~a~~~------~~~~---------------~d~il~~~~~~d~~~~~~ 59 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFV-PAESA------ELPV---------------FDRIFTRIGASDSLAQGL 59 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCe-eehhe------Eecc---------------cceEEEEeCCCCchhccc
Confidence 6899999999999999998322 2211 11100 0000 001122222222 456
Q ss_pred cccChhHhHHHHHHHHhhCCcEEEEECCHHHH------------HHHHHhc-CCCCccccCCC
Q 025114 132 VSTGGGAVTRPINWRYMQKGISVWLDVPLEAL------------AQRIAAV-GTDSRPLLHQC 181 (257)
Q Consensus 132 ~~lsgG~~qr~~~a~~l~~~~vl~LDep~~~L------------~~rl~~~-g~~~~~~~h~~ 181 (257)
..+|+++++...+.....+|.++++|||+.++ ++.+.+. +.+++.++|+.
T Consensus 60 s~fs~~~~~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~ 122 (185)
T smart00534 60 STFMVEMKETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH 122 (185)
T ss_pred cHHHHHHHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH
Confidence 67777777655554444479999999997665 3444443 67788889983
No 447
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.85 E-value=1.1e-08 Score=83.86 Aligned_cols=157 Identities=18% Similarity=0.200 Sum_probs=81.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhC-----CceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccCccc
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLG-----YSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLV 131 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg-----~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v 131 (257)
|++++|+|++||||||+++.|++.+. ..++++|.+......+.....- .....++. ...+.+.+. ....+
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~~~~~~~~---~r~~~~~~-~~~~a~~~~-~~g~~ 78 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGFSKE---DRDTNIRR-IGFVANLLT-RHGVI 78 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhcCCCCChh---hHHHHHHH-HHHHHHHHH-hCCCE
Confidence 99999999999999999999999882 4567887654322111110000 00011111 111111111 12222
Q ss_pred cccChh---HhHHHHHHHHhhCCcEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhc-
Q 025114 132 VSTGGG---AVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN- 207 (257)
Q Consensus 132 ~~lsgG---~~qr~~~a~~l~~~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~- 207 (257)
..+++. ...+..+........++|||.|.+.+.+|.. +++.-... . +.+..++..|.+.|.+
T Consensus 79 vi~~~~~~~~~~~~~l~~~~~~~~~v~l~~~~e~~~~R~~------~~l~~~~~-~-------~~i~~~~~~~~~~~~p~ 144 (175)
T PRK00889 79 VLVSAISPYRETREEVRANIGNFLEVFVDAPLEVCEQRDV------KGLYAKAR-A-------GEIKHFTGIDDPYEPPL 144 (175)
T ss_pred EEEecCCCCHHHHHHHHhhcCCeEEEEEcCCHHHHHHhCc------ccHHHHHH-c-------CCCCCCcccCCCCCCCC
Confidence 223322 2223333333234578999999999888842 11110000 0 1111223344555542
Q ss_pred -ccceecchhhhhhccccCCCCCCHHHHHHHHHHHHHh
Q 025114 208 -ANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEG 244 (257)
Q Consensus 208 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~ 244 (257)
++.+ ++++..+++++++++++.|+.
T Consensus 145 ~ad~~------------i~~~~~~~~~~~~~i~~~l~~ 170 (175)
T PRK00889 145 NPEVE------------CRTDLESLEESVDKVLQKLEE 170 (175)
T ss_pred CCcEE------------EECCCCCHHHHHHHHHHHHHH
Confidence 2322 256678999999999988863
No 448
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.85 E-value=1.1e-07 Score=75.21 Aligned_cols=149 Identities=20% Similarity=0.244 Sum_probs=87.3
Q ss_pred EcCCCChHHHHHHHHHhhhCCceecchhhhh-----hcCCCCCHHHHHHHhCchHHHHHHHHHHHH-hcccCccccccCh
Q 025114 63 VGMMGSGKTTVGKILSGVLGYSFFDCDTLIE-----QSVDGTSVAEIFKLYGEGFFREKETEVLQK-LSLMRQLVVSTGG 136 (257)
Q Consensus 63 iG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~-----~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~-l~~~~~~v~~lsg 136 (257)
+|.+||||||++..|+..+|..|+++|++.. +...|.++.+-- .+.+. +...+.+.. ..-....+..||.
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~DdD---R~pWL-~~l~~~~~~~~~~~~~~vi~CSA 76 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLNDDD---RWPWL-EALGDAAASLAQKNKHVVIACSA 76 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCCcch---hhHHH-HHHHHHHHHhhcCCCceEEecHH
Confidence 5899999999999999999999999998643 222233333211 01121 222222322 2222246788886
Q ss_pred hHhHHHHHHHHhh-CCcEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccc---cee
Q 025114 137 GAVTRPINWRYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN---ARV 212 (257)
Q Consensus 137 G~~qr~~~a~~l~-~~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~---~~~ 212 (257)
=.++.-.+.+--. +-.++||+-+.+.+.+|++.+.. |.+.. .|+......-..|. .++
T Consensus 77 LKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~g------HFM~~------------~ll~SQfa~LE~P~~de~vi 138 (161)
T COG3265 77 LKRSYRDLLREANPGLRFVYLDGDFDLILERMKARKG------HFMPA------------SLLDSQFATLEEPGADEDVL 138 (161)
T ss_pred HHHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhccc------CCCCH------------HHHHHHHHHhcCCCCCCCEE
Confidence 4443333222222 34688999999999999987632 44321 33344444444432 244
Q ss_pred cchhhhhhccccCCCCCCHHHHHHHHHHHHHh
Q 025114 213 SLENIAVKLGHKDVSSLTPVTIAIEALEQIEG 244 (257)
Q Consensus 213 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~ 244 (257)
+. + -+.+++++++++++.+..
T Consensus 139 ~i----------d-i~~~~e~vv~~~~~~l~~ 159 (161)
T COG3265 139 TI----------D-IDQPPEEVVAQALAWLKE 159 (161)
T ss_pred Ee----------e-CCCCHHHHHHHHHHHHhc
Confidence 32 2 236899999988887754
No 449
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.84 E-value=3.3e-09 Score=90.55 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=35.1
Q ss_pred ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhh
Q 025114 40 EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 40 ~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
+..+.+|++|++.. |++++|+||||+||||++|++++.
T Consensus 17 ~~~v~n~i~~~~~~---g~~~~itG~N~~GKStll~~i~~~ 54 (222)
T cd03287 17 KSFVPNDIHLSAEG---GYCQIITGPNMGGKSSYIRQVALI 54 (222)
T ss_pred CCEEEEeEEEEecC---CcEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999 999999999999999999999984
No 450
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.82 E-value=2.3e-08 Score=88.03 Aligned_cols=50 Identities=10% Similarity=0.040 Sum_probs=38.0
Q ss_pred ccccChhHhHHHHHHHH-hh----CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCC
Q 025114 131 VVSTGGGAVTRPINWRY-MQ----KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQC 181 (257)
Q Consensus 131 v~~lsgG~~qr~~~a~~-l~----~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~ 181 (257)
..+||||++|++.++.. +. .|++++||||+++| +.++. .+.+++.++|++
T Consensus 168 ~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~-~~~tii~isH~~ 233 (276)
T cd03241 168 AKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELS-RSHQVLCITHLP 233 (276)
T ss_pred hhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEechH
Confidence 34599999999999953 32 89999999999988 22222 256788899983
No 451
>PRK06217 hypothetical protein; Validated
Probab=98.80 E-value=3.8e-08 Score=81.36 Aligned_cols=102 Identities=24% Similarity=0.254 Sum_probs=63.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccCccccccChh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGG 137 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~~lsgG 137 (257)
..|+|+|++||||||+.+.|+..++.++++.|.+..... +.+... .+.. ......+++.+...+..+.. |+
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~-~~~~~~----~~~~--~~~~~~~~~~~~~~~~~vi~--G~ 72 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPT-DPPFTT----KRPP--EERLRLLLEDLRPREGWVLS--GS 72 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccC-CCCccc----cCCH--HHHHHHHHHHHhcCCCEEEE--cc
Confidence 358999999999999999999999999999998776443 222100 1111 12222333333222344444 43
Q ss_pred HhHHHHHHHHhh-CCcEEEEECCHHHHHHHHHhc
Q 025114 138 AVTRPINWRYMQ-KGISVWLDVPLEALAQRIAAV 170 (257)
Q Consensus 138 ~~qr~~~a~~l~-~~~vl~LDep~~~L~~rl~~~ 170 (257)
-.... ..... ...+++||.|.+....|+..+
T Consensus 73 ~~~~~--~~~~~~~d~~i~Ld~~~~~~~~Rl~~R 104 (183)
T PRK06217 73 ALGWG--DPLEPLFDLVVFLTIPPELRLERLRLR 104 (183)
T ss_pred HHHHH--HHHHhhCCEEEEEECCHHHHHHHHHcC
Confidence 33211 12222 356889999999999999854
No 452
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.79 E-value=3.6e-08 Score=88.96 Aligned_cols=98 Identities=17% Similarity=0.254 Sum_probs=72.3
Q ss_pred EEEEcCCCChHHHHHHHHHhhhCC------ceecchhhh-----hhcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC
Q 025114 60 IYLVGMMGSGKTTVGKILSGVLGY------SFFDCDTLI-----EQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR 128 (257)
Q Consensus 60 i~LiG~nGaGKSTLlk~Lag~lg~------~~~d~~~~~-----~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~ 128 (257)
++|+|++||||||+++.|+..+.. .+++.|+++ +... +.++.+.| ..||....++|+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~-~~~~~~~~-----k~~R~~i~~~le------ 69 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQ-SREIPSQW-----KQFRQELLKYLE------ 69 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhc-CCCcHHHH-----HHHHHHHHHHHH------
Confidence 689999999999999999987753 388899887 3333 77777777 356655555555
Q ss_pred ccccccChhHhH----------HHHHHHHhh-CCcEEEEECCHHHHHHHHHh
Q 025114 129 QLVVSTGGGAVT----------RPINWRYMQ-KGISVWLDVPLEALAQRIAA 169 (257)
Q Consensus 129 ~~v~~lsgG~~q----------r~~~a~~l~-~~~vl~LDep~~~L~~rl~~ 169 (257)
+.+.+++||... +..+...|. ++.+++||.+.+.+..|+..
T Consensus 70 ~~v~a~~~g~~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~ 121 (340)
T TIGR03575 70 HFLVAVINGSELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTK 121 (340)
T ss_pred HHHHHhcCcccccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhH
Confidence 356677777664 333446666 68889999999999888864
No 453
>PRK06762 hypothetical protein; Provisional
Probab=98.77 E-value=2.1e-07 Score=75.40 Aligned_cols=152 Identities=18% Similarity=0.178 Sum_probs=82.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhhh--CCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccCccccccC
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGVL--GYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTG 135 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~l--g~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~~ls 135 (257)
.++.|.|++||||||+.+.|+..+ +..+++.|.+......... ..+. ...+...+..+. .+......-+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~~------~~~~-~~~~~~~~~~~~-~~~~g~~vild 74 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKD------GPGN-LSIDLIEQLVRY-GLGHCEFVILE 74 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccccC------CCCC-cCHHHHHHHHHH-HHhCCCEEEEc
Confidence 589999999999999999999988 4556777766543221100 0000 000111111111 11121111122
Q ss_pred hh---HhHHHHHHHHhh----CCcEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcc
Q 025114 136 GG---AVTRPINWRYMQ----KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANA 208 (257)
Q Consensus 136 gG---~~qr~~~a~~l~----~~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~ 208 (257)
+. ...+..+..+.. .-.+++||.|.+...+|...++ ..|.++ .+.+..+++.+...+ .+
T Consensus 75 ~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~-----~~~~~~--------~~~l~~~~~~~~~~~-~~ 140 (166)
T PRK06762 75 GILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRP-----KSHEFG--------EDDMRRWWNPHDTLG-VI 140 (166)
T ss_pred hhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhccc-----ccccCC--------HHHHHHHHhhcCCcC-CC
Confidence 21 111222222222 2368899999999999987653 234322 145555555554433 23
Q ss_pred cceecchhhhhhccccCCCCCCHHHHHHHHHHHHH
Q 025114 209 NARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIE 243 (257)
Q Consensus 209 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~ 243 (257)
+.++ ++++.++++++..++..++
T Consensus 141 ~~~~------------~~~~~~~~~v~~~i~~~~~ 163 (166)
T PRK06762 141 GETI------------FTDNLSLKDIFDAILTDIG 163 (166)
T ss_pred CeEE------------ecCCCCHHHHHHHHHHHhc
Confidence 3333 5677899999999988774
No 454
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.76 E-value=3.9e-08 Score=80.77 Aligned_cols=136 Identities=19% Similarity=0.210 Sum_probs=78.0
Q ss_pred cccccccc--eEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhh--hhcCCCCCHHHHHHHh-Cc----h
Q 025114 41 AQVLKNKS--QEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLI--EQSVDGTSVAEIFKLY-GE----G 111 (257)
Q Consensus 41 ~~~l~~is--l~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~--~~~~~~~~v~e~~~~~-g~----~ 111 (257)
.++++++- |++++ .+++|+|.||+|||||+..|+-..|..-..+..-. +-...+....+.++.. ++ .
T Consensus 23 lPa~r~l~~~LeF~a----pIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g 98 (233)
T COG3910 23 LPAFRHLEERLEFRA----PITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIG 98 (233)
T ss_pred chHHHhhhhhccccC----ceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcc
Confidence 34555554 56664 68999999999999999999976654322222100 0000011122222211 00 0
Q ss_pred HH-H--------HHHHHHHHHhcccCccccccChhHhHHHHHHHHhhCCcEEEEECCHHHH-----------HHHHHhcC
Q 025114 112 FF-R--------EKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEAL-----------AQRIAAVG 171 (257)
Q Consensus 112 ~~-~--------~~~~~~l~~l~~~~~~v~~lsgG~~qr~~~a~~l~~~~vl~LDep~~~L-----------~~rl~~~g 171 (257)
+| | ....++....+...+.....|.|+---..+.+.+...-+.+||||-+.| ++++.+.|
T Consensus 99 ~FlRAEs~yn~as~~De~~~e~~~~~~sLh~~SHGEsf~~i~~~rf~~~GiYiLDEPEa~LSp~RQlella~l~~la~sG 178 (233)
T COG3910 99 FFLRAESFYNVASYLDEADGEANYGGRSLHHMSHGESFLAIFHNRFNGQGIYILDEPEAALSPSRQLELLAILRDLADSG 178 (233)
T ss_pred eEEehhHHHHHHHHHHhhhhhcccCCcchhhhccchHHHHHHHHHhccCceEEecCccccCCHHHHHHHHHHHHHHHhcC
Confidence 11 1 1111222122223466788899988776667777755578999999888 45666667
Q ss_pred CCCccccCC
Q 025114 172 TDSRPLLHQ 180 (257)
Q Consensus 172 ~~~~~~~h~ 180 (257)
..+++.+|-
T Consensus 179 aQ~IiATHS 187 (233)
T COG3910 179 AQIIIATHS 187 (233)
T ss_pred CeEEEEecC
Confidence 777777885
No 455
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.74 E-value=6e-09 Score=88.69 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=36.2
Q ss_pred CccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 39 DEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 39 ~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
++..+-+|++|+.++ +++++|.||||+||||+++.++...
T Consensus 15 ~~~~v~ndi~l~~~~---~~~~~itG~n~~gKs~~l~~i~~~~ 54 (218)
T cd03286 15 ASSFVPNDVDLGATS---PRILVLTGPNMGGKSTLLRTVCLAV 54 (218)
T ss_pred CCCeEEeeeEEeecC---CcEEEEECCCCCchHHHHHHHHHHH
Confidence 356789999999998 9999999999999999999999753
No 456
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.73 E-value=1.1e-07 Score=83.41 Aligned_cols=36 Identities=31% Similarity=0.365 Sum_probs=29.0
Q ss_pred ccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 42 QVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 42 ~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
..+++.++++.+ | +.+|+|||||||||++..|.-++
T Consensus 10 r~~~~~~~~~~~---~-~~~i~G~NGsGKS~ll~Ai~~~~ 45 (270)
T cd03242 10 RNYAELELEFEP---G-VTVLVGENAQGKTNLLEAISLLA 45 (270)
T ss_pred cCcceeEEecCC---C-eEEEECCCCCCHHHHHHHHHHhc
Confidence 345566777776 5 78899999999999999997655
No 457
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.72 E-value=2e-08 Score=85.23 Aligned_cols=35 Identities=17% Similarity=0.038 Sum_probs=25.9
Q ss_pred ccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHh
Q 025114 42 QVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSG 79 (257)
Q Consensus 42 ~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag 79 (257)
.|=+|+++.=.. +.+++|.||||+||||++|.++.
T Consensus 17 ~vpnd~~l~~~~---~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 17 FVPNDTEIGGGG---PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEcceEEecCCC---ceEEEEECCCCCChHHHHHHHHH
Confidence 344555543221 27899999999999999999984
No 458
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.70 E-value=1.2e-06 Score=70.26 Aligned_cols=168 Identities=23% Similarity=0.357 Sum_probs=93.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcC--CCCCHHHHHHHhCch-HHHHHHHHHHHHhcccCccccccC
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV--DGTSVAEIFKLYGEG-FFREKETEVLQKLSLMRQLVVSTG 135 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~--~~~~v~e~~~~~g~~-~~~~~~~~~l~~l~~~~~~v~~ls 135 (257)
++.|-||+||||||+.+.||..+|..++....++.+.. .|+++.++-+..... .+......-...+......|..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~rq~e~a~~~nvVle-- 79 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDRRQKELAKEGNVVLE-- 79 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHHHHHHHHHcCCeEEh--
Confidence 57899999999999999999999999998777664421 389988876542211 1111111111112222222221
Q ss_pred hhHhHHHHHHHHhh-CCcEEEEECCHHHHHHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceec
Q 025114 136 GGAVTRPINWRYMQ-KGISVWLDVPLEALAQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVS 213 (257)
Q Consensus 136 gG~~qr~~~a~~l~-~~~vl~LDep~~~L~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~ 213 (257)
-|.+.|-+-. ...-+||..|...-.+|++.+ |+.+.- +... ...|=..-...-...||- .
T Consensus 80 ----grLA~Wi~k~~adlkI~L~Apl~vRa~Ria~REgi~~~~-------a~~~--~~~RE~se~kRY~~~YgI-----D 141 (179)
T COG1102 80 ----GRLAGWIVREYADLKIWLKAPLEVRAERIAKREGIDVDE-------ALAE--TVEREESEKKRYKKIYGI-----D 141 (179)
T ss_pred ----hhhHHHHhccccceEEEEeCcHHHHHHHHHHhcCCCHHH-------HHHH--HHHHHHHHHHHHHHHhCC-----C
Confidence 1222221111 234579999999999999865 443211 1111 111111111222345552 1
Q ss_pred chhhhhhcc-ccCCCCCCHHHHHHHHHHHHHhhhc
Q 025114 214 LENIAVKLG-HKDVSSLTPVTIAIEALEQIEGFLK 247 (257)
Q Consensus 214 ~~~l~~~~~-~~~~~~~~~~~~~~~i~~~i~~~~~ 247 (257)
.++++ .|. .++++..+|+++..-+...+.....
T Consensus 142 idDlS-iyDLVinTs~~~~~~v~~il~~aid~~~~ 175 (179)
T COG1102 142 IDDLS-IYDLVINTSKWDPEEVFLILLDAIDALSI 175 (179)
T ss_pred Cccce-eeEEEEecccCCHHHHHHHHHHHHHhhcc
Confidence 11211 222 4688899999999888888876543
No 459
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.68 E-value=1.2e-06 Score=77.59 Aligned_cols=147 Identities=20% Similarity=0.253 Sum_probs=82.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccCc---cccc
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQ---LVVS 133 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~---~v~~ 133 (257)
.++++|.|++||||||+++.|.. .|+.++|.. ++.. +. .+.+ .+..-+...+ .+..
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~~-~g~~~~d~~----------~~~L-~~-----~l~~----~~~~~~~~~~~av~iD~ 64 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALED-LGYYCVDNL----------PPSL-LP-----KLVE----LLAQSGGIRKVAVVIDV 64 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHHH-cCCeEECCc----------CHHH-HH-----HHHH----HHHhcCCCCCeEEEEcc
Confidence 67999999999999999999974 477665443 2211 10 0000 0111000011 1111
Q ss_pred cChhH-hHHHHHHHHhh-CC---cEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcc
Q 025114 134 TGGGA-VTRPINWRYMQ-KG---ISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANA 208 (257)
Q Consensus 134 lsgG~-~qr~~~a~~l~-~~---~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~ 208 (257)
.+.+. .....+...+. .+ .++|||.|.+.+.+|+.... ..+|+.-+ ... .+.+......+.+.|..+
T Consensus 65 r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~r-r~RPLl~~----~~l---~e~I~~eR~~l~pl~~~A 136 (288)
T PRK05416 65 RSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSETR-RRHPLSGD----GSL---LEGIELERELLAPLRERA 136 (288)
T ss_pred CchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhcc-cCCCccCC----ccH---HHHHHHHHhhhhhHHHhC
Confidence 22221 12223334443 22 67999999999999997432 34666532 111 122333333334456666
Q ss_pred cceecchhhhhhccccCCCCCCHHHHHHHHHHHHHh
Q 025114 209 NARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEG 244 (257)
Q Consensus 209 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~ 244 (257)
+.++ +++..++++++++|.+.+..
T Consensus 137 DivI------------DTs~ls~~el~e~I~~~l~~ 160 (288)
T PRK05416 137 DLVI------------DTSELSVHQLRERIRERFGG 160 (288)
T ss_pred CEEE------------ECCCCCHHHHHHHHHHHHhc
Confidence 6665 67889999999999888855
No 460
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.66 E-value=7.9e-07 Score=72.90 Aligned_cols=37 Identities=35% Similarity=0.618 Sum_probs=30.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCcee--cchhhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFF--DCDTLIE 93 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~--d~~~~~~ 93 (257)
|.++.|.|++||||||+.|.|+..++..++ +.|.+..
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~ 40 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIE 40 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHH
Confidence 789999999999999999999988765443 5665543
No 461
>PRK13695 putative NTPase; Provisional
Probab=98.65 E-value=4.7e-09 Score=86.04 Aligned_cols=128 Identities=17% Similarity=0.222 Sum_probs=71.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh---CCc---eecchhhhhhc-CCCCCHHHHHHHhCchHHHHHHHHHHHHhcc-c---
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVL---GYS---FFDCDTLIEQS-VDGTSVAEIFKLYGEGFFREKETEVLQKLSL-M--- 127 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~l---g~~---~~d~~~~~~~~-~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~-~--- 127 (257)
.++|+|+||||||||++.+++.+ |.. ++. ..+.+.. ..+..+.+. . ......+...+. .
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~~~-~~~~~~~~~~~~~~~~~--------~-~~~~~~l~~~~~~~~~~ 71 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVGGFYT-EEVREGGKRIGFKIIDL--------D-TGEEGILARVGFPSRPR 71 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEc-HHHHhcCCccceEEEEc--------C-CCCeEEccccCCCCCCc
Confidence 58999999999999999998765 322 111 1110000 000000000 0 000111222222 1
Q ss_pred -CccccccChhHhHHHHHHHH-hhCCcEEEEEC--CHHHH-------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHH
Q 025114 128 -RQLVVSTGGGAVTRPINWRY-MQKGISVWLDV--PLEAL-------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLST 196 (257)
Q Consensus 128 -~~~v~~lsgG~~qr~~~a~~-l~~~~vl~LDe--p~~~L-------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~ 196 (257)
.+.+..+||++......... +.+|+++++|| |++.+ +..+...+.+++.++|+ .....++ +++..
T Consensus 72 ~~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~-~~~~~~~---~~i~~ 147 (174)
T PRK13695 72 VGKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHR-RSVHPFV---QEIKS 147 (174)
T ss_pred eeeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECc-hhhHHHH---HHHhc
Confidence 14567789988887776644 44799999999 65454 23333457788888997 3333444 66655
Q ss_pred HHHH
Q 025114 197 LWEE 200 (257)
Q Consensus 197 l~~~ 200 (257)
+.++
T Consensus 148 ~~~~ 151 (174)
T PRK13695 148 RPGG 151 (174)
T ss_pred cCCc
Confidence 5554
No 462
>PLN02200 adenylate kinase family protein
Probab=98.64 E-value=4.4e-06 Score=71.91 Aligned_cols=114 Identities=17% Similarity=0.258 Sum_probs=65.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCC-----HHHHHHHhCchHHHHHHHHH-HHHhcccCcc
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTS-----VAEIFKLYGEGFFREKETEV-LQKLSLMRQL 130 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~-----v~e~~~~~g~~~~~~~~~~~-l~~l~~~~~~ 130 (257)
..+++|+|++||||||+.+.|+..+|...+...+++.......+ +.+.+. .|.....+....+ .+.+......
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~-~G~~vp~e~~~~~l~~~l~~~~~~ 121 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIK-EGKIVPSEVTVKLIQKEMESSDNN 121 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHH-cCCCCcHHHHHHHHHHHHhcCCCC
Confidence 46899999999999999999999999988888777654331211 122221 1221111211122 1222211111
Q ss_pred ccccCh---hHhHHHHHHHHhh-CC-cEEEEECCHHHHHHHHHhcC
Q 025114 131 VVSTGG---GAVTRPINWRYMQ-KG-ISVWLDVPLEALAQRIAAVG 171 (257)
Q Consensus 131 v~~lsg---G~~qr~~~a~~l~-~~-~vl~LDep~~~L~~rl~~~g 171 (257)
..-+.| ...|+..+...+. .| .+++||.|.+.+.+|+..++
T Consensus 122 ~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~ 167 (234)
T PLN02200 122 KFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRN 167 (234)
T ss_pred eEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCc
Confidence 112222 2334433333333 45 46789999999999998653
No 463
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.64 E-value=1.5e-07 Score=76.56 Aligned_cols=105 Identities=15% Similarity=0.180 Sum_probs=56.7
Q ss_pred EcCCCChHHHHHHHHHhhhCCceecchhhhh-----hcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccCccccccChh
Q 025114 63 VGMMGSGKTTVGKILSGVLGYSFFDCDTLIE-----QSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGG 137 (257)
Q Consensus 63 iG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~-----~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~~lsgG 137 (257)
+|+|||||||+++.|++.+|.+++++|.+.. ....|....+- . -..+.......+..........+...+..
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~viv~s~~ 77 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDD-D--RKPWLQALNDAAFAMQRTNKVSLIVCSAL 77 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCCCCCChh-h--HHHHHHHHHHHHHHHHHcCCceEEEEecc
Confidence 6999999999999999999999999986521 11112221110 0 00111111111111111111222334443
Q ss_pred HhHHHHHHHHhh-CCcEEEEECCHHHHHHHHHhc
Q 025114 138 AVTRPINWRYMQ-KGISVWLDVPLEALAQRIAAV 170 (257)
Q Consensus 138 ~~qr~~~a~~l~-~~~vl~LDep~~~L~~rl~~~ 170 (257)
....-..++... .-.++||+.|.+.+.+|+..+
T Consensus 78 ~~~~r~~~~~~~~~~~~v~l~a~~~~l~~Rl~~R 111 (163)
T PRK11545 78 KKHYRDLLREGNPNLSFIYLKGDFDVIESRLKAR 111 (163)
T ss_pred hHHHHHHHHccCCCEEEEEEECCHHHHHHHHHhc
Confidence 322222222222 346789999999999999876
No 464
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.63 E-value=1.5e-08 Score=94.26 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=37.2
Q ss_pred cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----C-Cceecchhh
Q 025114 41 AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----G-YSFFDCDTL 91 (257)
Q Consensus 41 ~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g-~~~~d~~~~ 91 (257)
..+|++||+++++ |++++|+||||||||||++ +++. | .+.+++.++
T Consensus 19 ~~vL~~Vsl~i~~---GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~ 69 (504)
T TIGR03238 19 ERILVKFNKELPS---SSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHS 69 (504)
T ss_pred HHHHhCCceeecC---CCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEEC
Confidence 3589999999999 9999999999999999999 5554 2 345555443
No 465
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.62 E-value=4.7e-06 Score=68.45 Aligned_cols=112 Identities=17% Similarity=0.298 Sum_probs=63.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCC-CC----HHHHHHHhCchHHHHHHHHHHHH-hcccCcccc
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDG-TS----VAEIFKLYGEGFFREKETEVLQK-LSLMRQLVV 132 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~-~~----v~e~~~~~g~~~~~~~~~~~l~~-l~~~~~~v~ 132 (257)
++.|+|++||||||+.+.|+..+|...++.++++...... .. +.+.+. .|.....+...+++.. +........
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~ll~~~~~~~~~~~~ 79 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIK-NGKIVPSEVTVKLLKNAIQADGSKKF 79 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHH-CCCcCCHHHHHHHHHHHHhccCCCcE
Confidence 4789999999999999999999999999987766544321 11 222221 2322222222233322 111111111
Q ss_pred ccCh---hHhHHHHHHHHhh---CC-cEEEEECCHHHHHHHHHhcC
Q 025114 133 STGG---GAVTRPINWRYMQ---KG-ISVWLDVPLEALAQRIAAVG 171 (257)
Q Consensus 133 ~lsg---G~~qr~~~a~~l~---~~-~vl~LDep~~~L~~rl~~~g 171 (257)
-+.| -..|.......+. .| .+++||.|.+.+.+|+..++
T Consensus 80 vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~ 125 (183)
T TIGR01359 80 LIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRG 125 (183)
T ss_pred EEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCC
Confidence 2222 1222222222222 34 47899999999999998764
No 466
>PLN02165 adenylate isopentenyltransferase
Probab=98.60 E-value=2.8e-07 Score=82.75 Aligned_cols=113 Identities=18% Similarity=0.327 Sum_probs=67.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhh--------------hhcCCCCC---HHHHHHHhCc---hHHHH
Q 025114 56 SGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLI--------------EQSVDGTS---VAEIFKLYGE---GFFRE 115 (257)
Q Consensus 56 ~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~--------------~~~~~~~~---v~e~~~~~g~---~~~~~ 115 (257)
.|++++|+||+|||||||+..|++.++..+++.|.+. +... +.. +..+....+. ..|+.
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~-gv~Hhli~~~~~~~~~~sv~~F~~ 120 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRR-GVPHHLLGELNPDDGELTASEFRS 120 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHc-CCChhhhheeccccceeeHHHHHH
Confidence 4899999999999999999999999988777777651 1111 211 1111111111 34555
Q ss_pred HHHHHHHHhcccCccccccChhH-hHHHHHHHH------------------hh-CCcEEEEECCHHHHHHHHHh
Q 025114 116 KETEVLQKLSLMRQLVVSTGGGA-VTRPINWRY------------------MQ-KGISVWLDVPLEALAQRIAA 169 (257)
Q Consensus 116 ~~~~~l~~l~~~~~~v~~lsgG~-~qr~~~a~~------------------l~-~~~vl~LDep~~~L~~rl~~ 169 (257)
.+.++++.+....+.++..||.- ..+..+... +. +..+++|+.|-+.|.+|+..
T Consensus 121 ~a~~~I~~i~~~~~~PI~vGGTglYi~aLl~g~~dpe~~p~~tg~~~~s~~~~~~~~~i~l~~dr~~L~~RI~~ 194 (334)
T PLN02165 121 LASLSISEITSRQKLPIVAGGSNSFIHALLADRFDPEIYPFSSGSSLISSDLRYDCCFIWVDVSEPVLFEYLSK 194 (334)
T ss_pred HHHHHHHHHHHCCCcEEEECChHHHHHHHHcCCCCCccChhhcCCCccccccCCCeEEEEECCCHHHHHHHHHH
Confidence 55566665544455666666643 222222211 11 23577898888888888765
No 467
>PRK13808 adenylate kinase; Provisional
Probab=98.58 E-value=3e-06 Score=76.24 Aligned_cols=111 Identities=19% Similarity=0.136 Sum_probs=62.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCC-----CCCHHHHHHHhCchHHHHHHHHHH-HHhcccC-ccc
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVD-----GTSVAEIFKLYGEGFFREKETEVL-QKLSLMR-QLV 131 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~-----~~~v~e~~~~~g~~~~~~~~~~~l-~~l~~~~-~~v 131 (257)
.|+|+||+||||||+.+.|+..+|...++.++++...+. +..+.+++...+. ...+....++ +++.... ..-
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~l-VPdeiv~~li~e~l~~~~~~~G 80 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGL-VPDEVVVGIISDRIEQPDAANG 80 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCC-CCHHHHHHHHHHHHhcccccCC
Confidence 488999999999999999999999999998887754321 2223334333221 1112222222 2222111 111
Q ss_pred cccChh---HhHHHHHHHHhh----CCc-EEEEECCHHHHHHHHHhc
Q 025114 132 VSTGGG---AVTRPINWRYMQ----KGI-SVWLDVPLEALAQRIAAV 170 (257)
Q Consensus 132 ~~lsgG---~~qr~~~a~~l~----~~~-vl~LDep~~~L~~rl~~~ 170 (257)
.-|-|- ..|-..+-.++. .|+ +|+||.|.+.+++|+..+
T Consensus 81 ~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R 127 (333)
T PRK13808 81 FILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETR 127 (333)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcC
Confidence 111221 122222222332 354 678999999999999754
No 468
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.56 E-value=4.3e-07 Score=72.32 Aligned_cols=109 Identities=32% Similarity=0.363 Sum_probs=61.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhh-----cCCCCCHHHHHHHhCchHHHHHHHHHHHHhc-ccCcccc
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQ-----SVDGTSVAEIFKLYGEGFFREKETEVLQKLS-LMRQLVV 132 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~-----~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~-~~~~~v~ 132 (257)
++.|.|++||||||+++.|+..++..+++.|.+... ...+....+ ...+.+++.....+...+. .....+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~vVi 77 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLND---EDRWPWLQALTDALLAKLASAGEGVVV 77 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCCCc---cchhhHHHHHHHHHHHHHHhCCCCEEE
Confidence 478999999999999999999999999998876542 111211111 0011222222222222221 1223343
Q ss_pred ccChh-HhHHHHHHHHhh--CCcEEEEECCHHHHHHHHHhc
Q 025114 133 STGGG-AVTRPINWRYMQ--KGISVWLDVPLEALAQRIAAV 170 (257)
Q Consensus 133 ~lsgG-~~qr~~~a~~l~--~~~vl~LDep~~~L~~rl~~~ 170 (257)
..+.- ...+..+..++. ...+++++.|.+.+.+|+..+
T Consensus 78 d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R 118 (150)
T cd02021 78 ACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAAR 118 (150)
T ss_pred EeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhc
Confidence 33322 222222223221 346889999999999999865
No 469
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.56 E-value=4.8e-08 Score=87.44 Aligned_cols=147 Identities=16% Similarity=0.101 Sum_probs=79.5
Q ss_pred cceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcc
Q 025114 47 KSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSL 126 (257)
Q Consensus 47 isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~ 126 (257)
+++.+.. |+.++|+|++|||||||++.|++.+.... ..-.++.. .|+. - .. -..+.+
T Consensus 137 l~~~v~~---~~~ili~G~tGsGKTTll~al~~~~~~~~--~iv~ied~------~El~---~----~~-----~~~~~l 193 (308)
T TIGR02788 137 LRLAIAS---RKNIIISGGTGSGKTTFLKSLVDEIPKDE--RIITIEDT------REIF---L----PH-----PNYVHL 193 (308)
T ss_pred HHHHhhC---CCEEEEECCCCCCHHHHHHHHHccCCccc--cEEEEcCc------cccC---C----CC-----CCEEEE
Confidence 4567777 99999999999999999999999874210 00001100 0000 0 00 000011
Q ss_pred cCccccccChhHhHHHHHHHHhh-CCcEEEEECCHHH-H---HHHHHhcCCC-CccccCCCCCCchhhHHHHHHHHHHHH
Q 025114 127 MRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEA-L---AQRIAAVGTD-SRPLLHQCESGDAYTEALNRLSTLWEE 200 (257)
Q Consensus 127 ~~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~-L---~~rl~~~g~~-~~~~~h~~~~~~~~~~~~~~v~~l~~~ 200 (257)
..+.-..-.+.......+...++ +|+++++|||... . ++.+. .|.. +..++|..+ +... .+|+..+..+
T Consensus 194 ~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ii~gE~r~~e~~~~l~a~~-~g~~~~i~T~Ha~~-~~~~---~~Rl~~l~~~ 268 (308)
T TIGR02788 194 FYSKGGQGLAKVTPKDLLQSCLRMRPDRIILGELRGDEAFDFIRAVN-TGHPGSITTLHAGS-PEEA---FEQLALMVKS 268 (308)
T ss_pred EecCCCCCcCccCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHh-cCCCeEEEEEeCCC-HHHH---HHHHHHHhhc
Confidence 00000000111112233444555 7999999999843 2 33333 3443 467778855 3322 4888888777
Q ss_pred HHHHHhcccceecchhhhhhcc
Q 025114 201 RGEAYANANARVSLENIAVKLG 222 (257)
Q Consensus 201 r~~~y~~~~~~~~~~~l~~~~~ 222 (257)
+....+.+.+++ .+.+.+.|+
T Consensus 269 ~~~~~g~~~~~~-~~~i~~~~d 289 (308)
T TIGR02788 269 SQAGLGLDFAYI-VKLVREVID 289 (308)
T ss_pred cccccCCCHHHH-HHHHHHhCC
Confidence 766667666555 355566655
No 470
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.55 E-value=3.6e-08 Score=89.91 Aligned_cols=139 Identities=24% Similarity=0.234 Sum_probs=82.6
Q ss_pred ccccceEecCC---CCCcEEEEEcCCCChHHHHHHHHHhhhCCcee------cchhhhhhcCCCCCHHHHHHH-------
Q 025114 44 LKNKSQEIEPY---LSGRCIYLVGMMGSGKTTVGKILSGVLGYSFF------DCDTLIEQSVDGTSVAEIFKL------- 107 (257)
Q Consensus 44 l~~isl~i~~~---~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~------d~~~~~~~~~~~~~v~e~~~~------- 107 (257)
....+|.+.++ ..|++.+++|-||-||||-+|+++|.+.+..- ++..++.. +.|..+...|..
T Consensus 84 y~~n~fKlhrlp~prpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~-frgselq~yftk~le~~lk 162 (592)
T KOG0063|consen 84 YSANSFKLHRLPIPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTY-FRGSELQNYFTKILEDNLK 162 (592)
T ss_pred hcccceeeccCCCCCcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhh-hhhHHHhhhhhhhcccccc
Confidence 33456666553 34999999999999999999999998843211 11111110 001000000000
Q ss_pred ----------h------------CchHHHHHHHHHHHHhccc---CccccccChhHhHHHHHHHHhh-CCcEEEEECCHH
Q 025114 108 ----------Y------------GEGFFREKETEVLQKLSLM---RQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLE 161 (257)
Q Consensus 108 ----------~------------g~~~~~~~~~~~l~~l~~~---~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~ 161 (257)
. +...-+....+++..+.+. ++.+..+|||+.||.++|.+.. ..++.++|||.+
T Consensus 163 ~~~kpQyvd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSs 242 (592)
T KOG0063|consen 163 AIIKPQYVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSS 242 (592)
T ss_pred CcCChHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcc
Confidence 0 0000111223455555443 3889999999999999996554 699999999998
Q ss_pred HHH--HHHHh---------cCCCCccccCCCCC
Q 025114 162 ALA--QRIAA---------VGTDSRPLLHQCES 183 (257)
Q Consensus 162 ~L~--~rl~~---------~g~~~~~~~h~~~~ 183 (257)
-|+ +|++. -..-++.+.||++-
T Consensus 243 YLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsV 275 (592)
T KOG0063|consen 243 YLDVKQRLKAAITIRSLINPDRYIIVVEHDLSV 275 (592)
T ss_pred cchHHHhhhHHHHHHHhhCCCCeEEEEEeechH
Confidence 773 33331 23345677888653
No 471
>PRK08118 topology modulation protein; Reviewed
Probab=98.54 E-value=3.8e-07 Score=74.46 Aligned_cols=35 Identities=34% Similarity=0.438 Sum_probs=31.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhCCceecchhhhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIE 93 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~ 93 (257)
.|.|+||+|||||||.+.|+..++.++++.|.+..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999999999888887654
No 472
>PRK14526 adenylate kinase; Provisional
Probab=98.54 E-value=1.1e-05 Score=68.27 Aligned_cols=111 Identities=19% Similarity=0.262 Sum_probs=62.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCC-----CCCHHHHHHHhCchHHHHHHHHHH-HHhcccC-ccc
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVD-----GTSVAEIFKLYGEGFFREKETEVL-QKLSLMR-QLV 131 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~-----~~~v~e~~~~~g~~~~~~~~~~~l-~~l~~~~-~~v 131 (257)
.++|+||+||||||+++.|++.++...++..+++..... +..+.+++.. |.....+...+++ +++.... ..-
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~-g~lvpd~~~~~lv~~~l~~~~~~~g 80 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVEN-GQLVPDSITIKIVEDKINTIKNNDN 80 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHc-CccCChHHHHHHHHHHHhcccccCc
Confidence 478999999999999999999999988888777655332 2234444433 2211111111222 2222111 111
Q ss_pred cccCh---hHhHHHHHHHHhhCCcEEEEECCHHHHHHHHHhc
Q 025114 132 VSTGG---GAVTRPINWRYMQKGISVWLDVPLEALAQRIAAV 170 (257)
Q Consensus 132 ~~lsg---G~~qr~~~a~~l~~~~vl~LDep~~~L~~rl~~~ 170 (257)
.-+-| ...|-..+...+....++.|+.|.+.+.+|+..+
T Consensus 81 ~ilDGfPR~~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~R 122 (211)
T PRK14526 81 FILDGFPRNINQAKALDKFLPNIKIINFLIDEELLIKRLSGR 122 (211)
T ss_pred EEEECCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHCC
Confidence 11222 1223222223223345777999999999999754
No 473
>PRK01184 hypothetical protein; Provisional
Probab=98.54 E-value=5.7e-06 Score=68.16 Aligned_cols=35 Identities=31% Similarity=0.460 Sum_probs=29.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQ 94 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~ 94 (257)
+++|+|++||||||+.+ ++..+|.++++.++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~ 37 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIRE 37 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHH
Confidence 78999999999999998 567789999987665543
No 474
>PRK14527 adenylate kinase; Provisional
Probab=98.53 E-value=8.1e-06 Score=67.84 Aligned_cols=115 Identities=22% Similarity=0.287 Sum_probs=64.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCC-CCCHHHHHHH---hCchHHHHHHHHHH-HHhcccC--c
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVD-GTSVAEIFKL---YGEGFFREKETEVL-QKLSLMR--Q 129 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~-~~~v~e~~~~---~g~~~~~~~~~~~l-~~l~~~~--~ 129 (257)
++++.|+||+||||||+.+.|+..+|...+..++++..... +.+....... .|.....+....++ +.+...+ .
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~~~~ 85 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGMEPVR 85 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCCCc
Confidence 88999999999999999999999999888887776644331 1122211111 11111111112222 2222111 1
Q ss_pred cccc-cChhHhHHHHHHHHhh----CCc-EEEEECCHHHHHHHHHhcC
Q 025114 130 LVVS-TGGGAVTRPINWRYMQ----KGI-SVWLDVPLEALAQRIAAVG 171 (257)
Q Consensus 130 ~v~~-lsgG~~qr~~~a~~l~----~~~-vl~LDep~~~L~~rl~~~g 171 (257)
.+.. +..-..|+..+...+. .+. +++||.|.+.+.+|+..++
T Consensus 86 ~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~ 133 (191)
T PRK14527 86 VIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERA 133 (191)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCc
Confidence 2222 2222233333323321 343 6899999999999998654
No 475
>PRK14531 adenylate kinase; Provisional
Probab=98.53 E-value=1.5e-05 Score=65.83 Aligned_cols=113 Identities=17% Similarity=0.141 Sum_probs=62.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCC-HHHHHH---HhCchHHHHHHHHHH-HHhcc-cC-cc-
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTS-VAEIFK---LYGEGFFREKETEVL-QKLSL-MR-QL- 130 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~-v~e~~~---~~g~~~~~~~~~~~l-~~l~~-~~-~~- 130 (257)
.+.|+||+||||||+.+.|+..+|..+++.++++.......+ ....++ ..|.....+....++ +.+.. .. ..
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~~~g~i 83 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALNSGGWL 83 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhccCCcEE
Confidence 588999999999999999999999999988777654432222 222111 122211111111111 12211 11 11
Q ss_pred ccccChhHhHHHHHHHHhh----CCc-EEEEECCHHHHHHHHHhcC
Q 025114 131 VVSTGGGAVTRPINWRYMQ----KGI-SVWLDVPLEALAQRIAAVG 171 (257)
Q Consensus 131 v~~lsgG~~qr~~~a~~l~----~~~-vl~LDep~~~L~~rl~~~g 171 (257)
+..+.....|...+...+. .+. +++||.|.+.+.+|+..++
T Consensus 84 lDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~ 129 (183)
T PRK14531 84 LDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARG 129 (183)
T ss_pred EeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCC
Confidence 1112222334333333332 344 8899999999999998654
No 476
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.52 E-value=3.1e-07 Score=80.62 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=23.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhhhC
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGVLG 82 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~lg 82 (257)
..++|+||||||||||++.|+|.+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 5789999999999999999999984
No 477
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.51 E-value=7.2e-08 Score=96.05 Aligned_cols=112 Identities=15% Similarity=0.078 Sum_probs=71.1
Q ss_pred ccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh-----CCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHHH
Q 025114 46 NKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL-----GYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEV 120 (257)
Q Consensus 46 ~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l-----g~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~ 120 (257)
..|+.+.. ++.++.|.|||++||||++|.++... |.+. ..... . ..++. ..+
T Consensus 318 pndi~l~~--~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~v-pa~~~----~-~i~~~---------------~~i 374 (782)
T PRK00409 318 PKDISLGF--DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPI-PANEP----S-EIPVF---------------KEI 374 (782)
T ss_pred CceeEECC--CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCc-ccCCC----c-ccccc---------------ceE
Confidence 34555543 15689999999999999999997542 3211 11100 0 00100 001
Q ss_pred HHHhccc---CccccccChhHhHHHHHHHHhhCCcEEEEECCHHHH------------HHHHHhcCCCCccccCC
Q 025114 121 LQKLSLM---RQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEAL------------AQRIAAVGTDSRPLLHQ 180 (257)
Q Consensus 121 l~~l~~~---~~~v~~lsgG~~qr~~~a~~l~~~~vl~LDep~~~L------------~~rl~~~g~~~~~~~h~ 180 (257)
+..++.. .+.+..+|+++.+...+++.+..|.+++||||+.++ ++.+...+.+++.++|+
T Consensus 375 ~~~ig~~~si~~~lStfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~ 449 (782)
T PRK00409 375 FADIGDEQSIEQSLSTFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHY 449 (782)
T ss_pred EEecCCccchhhchhHHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCh
Confidence 1112211 145677899999999988877789999999998765 34444557788889998
No 478
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.49 E-value=5.7e-07 Score=74.27 Aligned_cols=108 Identities=28% Similarity=0.333 Sum_probs=60.0
Q ss_pred EecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---C--CceecchhhhhhcCC--CCCHHHHHHHhCchHHHHHHHHHHH
Q 025114 50 EIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---G--YSFFDCDTLIEQSVD--GTSVAEIFKLYGEGFFREKETEVLQ 122 (257)
Q Consensus 50 ~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---g--~~~~d~~~~~~~~~~--~~~v~e~~~~~g~~~~~~~~~~~l~ 122 (257)
...+ |++++|+|++||||||+++.|++.+ | ..++++|.+...... +.+..+... .++. ...+..
T Consensus 14 ~~~~---~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~~~~~~~~-----~~~~-~~~~~~ 84 (184)
T TIGR00455 14 NGHR---GVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFSEEDRKE-----NIRR-IGEVAK 84 (184)
T ss_pred hCCC---CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCCCHHHHHH-----HHHH-HHHHHH
Confidence 3455 9999999999999999999999987 2 357777765432221 112111110 1111 111122
Q ss_pred HhcccC-ccccc-cChhHhHHHHHHHHhhC--CcEEEEECCHHHHHHH
Q 025114 123 KLSLMR-QLVVS-TGGGAVTRPINWRYMQK--GISVWLDVPLEALAQR 166 (257)
Q Consensus 123 ~l~~~~-~~v~~-lsgG~~qr~~~a~~l~~--~~vl~LDep~~~L~~r 166 (257)
.+.... ..+.+ .+.....|..+.....+ -.++|++.|.+.+.+|
T Consensus 85 ~~~~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R 132 (184)
T TIGR00455 85 LFVRNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQR 132 (184)
T ss_pred HHHcCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHh
Confidence 221111 22222 33334555444444443 2468999999988777
No 479
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.46 E-value=7.2e-07 Score=76.58 Aligned_cols=41 Identities=24% Similarity=0.444 Sum_probs=32.2
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHH-HHHHHhhh
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTV-GKILSGVL 81 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTL-lk~Lag~l 81 (257)
+.++++.+.+++ .+++ |+++.|+|+|||||||| ++.+++.+
T Consensus 8 ~~~~~ld~~l~g---------gi~~---g~~~~i~G~~G~GKTtl~~~~~~~~~ 49 (230)
T PRK08533 8 LSRDELHKRLGG---------GIPA---GSLILIEGDESTGKSILSQRLAYGFL 49 (230)
T ss_pred EEEeeeehhhCC---------CCCC---CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445666666654 2677 99999999999999999 58888765
No 480
>PRK08356 hypothetical protein; Provisional
Probab=98.46 E-value=1.1e-05 Score=67.29 Aligned_cols=159 Identities=16% Similarity=0.259 Sum_probs=81.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhh----hhcCCCC------------CHHHHHHHhCchHHH-----H
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLI----EQSVDGT------------SVAEIFKLYGEGFFR-----E 115 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~----~~~~~~~------------~v~e~~~~~g~~~~~-----~ 115 (257)
..+++|+||+||||||+.+.|.. .|...+...+.. +...... +..+++.. |. ..+ .
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~~-~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~-g~-~~~~~yG~~ 81 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFEE-KGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIEL-GR-YLKEKYGED 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH-CCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHH-HH-HHHHhcCcH
Confidence 45789999999999999999975 666544443321 1110000 00111110 10 001 0
Q ss_pred -HHHHHHHHhcccCccccccChhHhHHHHHHHHhh--CCcEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHH
Q 025114 116 -KETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQ--KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALN 192 (257)
Q Consensus 116 -~~~~~l~~l~~~~~~v~~lsgG~~qr~~~a~~l~--~~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~ 192 (257)
....+++.+.... ...+.|- ++. ..+..+. ...+++++.|.+.+.+|+..++....+..+. .+
T Consensus 82 ~~~~~~~~~~~~~~--~ividG~-r~~-~q~~~l~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~----------~e 147 (195)
T PRK08356 82 ILIRLAVDKKRNCK--NIAIDGV-RSR-GEVEAIKRMGGKVIYVEAKPEIRFERLRRRGAEKDKGIKS----------FE 147 (195)
T ss_pred HHHHHHHHHhccCC--eEEEcCc-CCH-HHHHHHHhcCCEEEEEECCHHHHHHHHHhcCCcccccccc----------HH
Confidence 0112333331111 2334443 333 2333332 3578899999999999998765433332221 13
Q ss_pred HHHHHHHHHHHHHh------cccceecchhhhhhccccCCCCCCHHHHHHHHHHHHHhh
Q 025114 193 RLSTLWEERGEAYA------NANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGF 245 (257)
Q Consensus 193 ~v~~l~~~r~~~y~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~ 245 (257)
.+..+.+.+...|. .++.++ .++.+.+++..++...+..+
T Consensus 148 ~~~~~~~~~~~l~~~~~~~~~aD~vI-------------~N~~~~e~~~~~i~~~~~~~ 193 (195)
T PRK08356 148 DFLKFDEWEEKLYHTTKLKDKADFVI-------------VNEGTLEELRKKVEEILREL 193 (195)
T ss_pred HHHHHHHHHHHhhhhhhHHHhCcEEE-------------ECCCCHHHHHHHHHHHHHHh
Confidence 34344443333332 344444 23478999998887777654
No 481
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.43 E-value=1.2e-07 Score=88.44 Aligned_cols=39 Identities=13% Similarity=0.219 Sum_probs=36.1
Q ss_pred ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC
Q 025114 40 EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG 82 (257)
Q Consensus 40 ~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg 82 (257)
+..+++++ |++.+ |++++|+|+||+|||||+++|++...
T Consensus 145 g~~vid~l-~~i~~---Gq~i~I~G~sG~GKStLl~~I~~~~~ 183 (438)
T PRK07721 145 GVRAIDSL-LTVGK---GQRVGIFAGSGVGKSTLMGMIARNTS 183 (438)
T ss_pred chhhhhee-eeecC---CcEEEEECCCCCCHHHHHHHHhcccC
Confidence 45689999 99999 99999999999999999999999764
No 482
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.42 E-value=3e-07 Score=72.29 Aligned_cols=108 Identities=26% Similarity=0.224 Sum_probs=62.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCC--C---HHHHHHHhCchHHHHHHHHHHH-HhcccCcccc
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGT--S---VAEIFKLYGEGFFREKETEVLQ-KLSLMRQLVV 132 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~--~---v~e~~~~~g~~~~~~~~~~~l~-~l~~~~~~v~ 132 (257)
++.++||+||||||+.+.|+..++..+++.|.+........ + ..+.. ........+.+. .+......+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~g~~~vv 75 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAE-----ERAYQILNAAIRKALRNGNSVVV 75 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHH-----HHHHHHHHHHHHHHHHTT-EEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHH-----HHHHHHHHHHHHHHHHcCCCcee
Confidence 47899999999999999999999988999988765443110 0 01110 001111112222 2222223333
Q ss_pred c-cChhHhHHHHHHHHhh----CCcEEEEECCHHHHHHHHHhcC
Q 025114 133 S-TGGGAVTRPINWRYMQ----KGISVWLDVPLEALAQRIAAVG 171 (257)
Q Consensus 133 ~-lsgG~~qr~~~a~~l~----~~~vl~LDep~~~L~~rl~~~g 171 (257)
. .......+..+..++. ...+++|+.|.+.+.+|+..++
T Consensus 76 d~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~ 119 (143)
T PF13671_consen 76 DNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRN 119 (143)
T ss_dssp ESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTH
T ss_pred ccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcC
Confidence 3 2222334444444443 2368899999999999998653
No 483
>PRK02496 adk adenylate kinase; Provisional
Probab=98.40 E-value=2.1e-05 Score=64.76 Aligned_cols=112 Identities=19% Similarity=0.223 Sum_probs=62.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCC-----HHHHHHHhCchHHHHHHHHHH-HHhcccC-ccc
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTS-----VAEIFKLYGEGFFREKETEVL-QKLSLMR-QLV 131 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~-----v~e~~~~~g~~~~~~~~~~~l-~~l~~~~-~~v 131 (257)
.++|+||+||||||+.+.|+..+|...++.++++.......+ +...+. .|.....+....++ +++...+ ...
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~-~g~~~~~~~~~~~l~~~l~~~~~~~g 81 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMD-KGELVPDQLVLDLVQERLQQPDAANG 81 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHH-CCCccCHHHHHHHHHHHHhCcCccCC
Confidence 588999999999999999999999988888777654331111 112221 12211222222222 2232111 111
Q ss_pred cccChh---HhHHHHHHHHh---h-CC-cEEEEECCHHHHHHHHHhcC
Q 025114 132 VSTGGG---AVTRPINWRYM---Q-KG-ISVWLDVPLEALAQRIAAVG 171 (257)
Q Consensus 132 ~~lsgG---~~qr~~~a~~l---~-~~-~vl~LDep~~~L~~rl~~~g 171 (257)
.-+.|. ..|...+...+ . .| .+++||.|.+.+.+|+..++
T Consensus 82 ~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~ 129 (184)
T PRK02496 82 WILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARG 129 (184)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCC
Confidence 122232 22322222222 2 34 46899999999999998653
No 484
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.39 E-value=1.6e-08 Score=101.92 Aligned_cols=89 Identities=13% Similarity=0.079 Sum_probs=69.3
Q ss_pred HHHHhccc----CccccccChhHhHHHHHHHHhh-CC--cEEEEECCHHHH-----------HHHHHhcCCCCccccCCC
Q 025114 120 VLQKLSLM----RQLVVSTGGGAVTRPINWRYMQ-KG--ISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQC 181 (257)
Q Consensus 120 ~l~~l~~~----~~~v~~lsgG~~qr~~~a~~l~-~~--~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~ 181 (257)
.|+.+++. ++.+..|||||+||+.+++++. +| .+++||||+++| ++++++.|.++++++|++
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~ 551 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDE 551 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 46666664 3789999999999999998886 44 899999999998 577777789999999997
Q ss_pred CCCchhhHHHHHHHHH------HHHHHHHHhccccee
Q 025114 182 ESGDAYTEALNRLSTL------WEERGEAYANANARV 212 (257)
Q Consensus 182 ~~~~~~~~~~~~v~~l------~~~r~~~y~~~~~~~ 212 (257)
+.+. .| |++..| .+|++...|+++++.
T Consensus 552 ~~i~-~a---D~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 552 DTIR-AA---DYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred HHHH-hC---CEEEEeccccCCCCCEEeeccCHHHHh
Confidence 6543 35 787777 666766666655443
No 485
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.39 E-value=3.7e-07 Score=76.23 Aligned_cols=33 Identities=36% Similarity=0.435 Sum_probs=26.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhC---Cceecchhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVLG---YSFFDCDTL 91 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~lg---~~~~d~~~~ 91 (257)
+++|+||+|||||||++.|+++++ ..++..|++
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~ 36 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSY 36 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 489999999999999999999873 345555544
No 486
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.39 E-value=1.9e-08 Score=101.29 Aligned_cols=88 Identities=17% Similarity=0.134 Sum_probs=67.9
Q ss_pred HHHHhccc----CccccccChhHhHHHHHHHHhh-C--CcEEEEECCHHHH-----------HHHHHhcCCCCccccCCC
Q 025114 120 VLQKLSLM----RQLVVSTGGGAVTRPINWRYMQ-K--GISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQC 181 (257)
Q Consensus 120 ~l~~l~~~----~~~v~~lsgG~~qr~~~a~~l~-~--~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~ 181 (257)
.+..+++. ++.+..|||||+||+.+++++. + |.+++||||+++| ++++++.|.+++.++|++
T Consensus 470 ~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~ 549 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE 549 (924)
T ss_pred hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 35556654 3789999999999999998886 4 4899999999998 577776788999999997
Q ss_pred CCCchhhHHHHHHHHH------HHHHHHHHhcccce
Q 025114 182 ESGDAYTEALNRLSTL------WEERGEAYANANAR 211 (257)
Q Consensus 182 ~~~~~~~~~~~~v~~l------~~~r~~~y~~~~~~ 211 (257)
+.+. +| |++..| .+|++...|+++++
T Consensus 550 ~~i~-~a---D~vi~LgpgaG~~~G~Iv~~g~~~el 581 (924)
T TIGR00630 550 ETIR-AA---DYVIDIGPGAGIHGGEVVASGTPEEI 581 (924)
T ss_pred HHHh-hC---CEEEEecccccCCCCEEeeccCHHHH
Confidence 6543 55 787777 66766666655444
No 487
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.39 E-value=1.2e-05 Score=65.05 Aligned_cols=105 Identities=28% Similarity=0.440 Sum_probs=59.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcC--CCCCHHHHHHHhCc-hHHHHHHHHHHHHhc-ccCcccccc
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV--DGTSVAEIFKLYGE-GFFREKETEVLQKLS-LMRQLVVST 134 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~--~~~~v~e~~~~~g~-~~~~~~~~~~l~~l~-~~~~~v~~l 134 (257)
+|+|.|++||||||+++.|+..+|.++++.+++..... .+.+..++...... ........+.+..+. .....|..
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Vi~- 80 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENPEIDKKIDRRIHEIALKEKNVVLE- 80 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCEEEE-
Confidence 68999999999999999999999999999876544322 14444433222111 011111112222221 11222222
Q ss_pred ChhHhHHHHHHHHhh--CCcEEEEECCHHHHHHHHHhc
Q 025114 135 GGGAVTRPINWRYMQ--KGISVWLDVPLEALAQRIAAV 170 (257)
Q Consensus 135 sgG~~qr~~~a~~l~--~~~vl~LDep~~~L~~rl~~~ 170 (257)
+.+.. + .+. ...+++++.|.+...+|+..+
T Consensus 81 g~~~~-----~-~~~~~~d~~v~v~a~~~~r~~R~~~R 112 (171)
T TIGR02173 81 SRLAG-----W-IVREYADVKIWLKAPLEVRARRIAKR 112 (171)
T ss_pred ecccc-----e-eecCCcCEEEEEECCHHHHHHHHHHc
Confidence 21100 0 111 125789999999999998865
No 488
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.38 E-value=1.9e-05 Score=66.08 Aligned_cols=27 Identities=37% Similarity=0.338 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhhhC
Q 025114 56 SGRCIYLVGMMGSGKTTVGKILSGVLG 82 (257)
Q Consensus 56 ~Ge~i~LiG~nGaGKSTLlk~Lag~lg 82 (257)
+|++++|+||+|||||||++.|++.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 399999999999999999999999875
No 489
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.35 E-value=6e-05 Score=63.59 Aligned_cols=110 Identities=22% Similarity=0.256 Sum_probs=62.8
Q ss_pred EEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCC-----HHHHHHHhCchHHHHHHHHHH-HHhccc-C-ccc
Q 025114 60 IYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTS-----VAEIFKLYGEGFFREKETEVL-QKLSLM-R-QLV 131 (257)
Q Consensus 60 i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~-----v~e~~~~~g~~~~~~~~~~~l-~~l~~~-~-~~v 131 (257)
+.|+||+||||||+.+.|+..+|...+..++++.......+ +.+++.. |...-.+...+++ +++... . ..-
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~-g~~vp~~~~~~l~~~~i~~~~~~~~~ 80 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEK-GELVPDEIVNQLVKERLTQNQDNENG 80 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCcccCCc
Confidence 78999999999999999999999999988877765432222 2222221 2111111112222 222210 0 111
Q ss_pred cccCh---hHhHHHHHHHHhh-CC-cEEEEECCHHHHHHHHHhc
Q 025114 132 VSTGG---GAVTRPINWRYMQ-KG-ISVWLDVPLEALAQRIAAV 170 (257)
Q Consensus 132 ~~lsg---G~~qr~~~a~~l~-~~-~vl~LDep~~~L~~rl~~~ 170 (257)
.-+.| ...|...+...+. .+ .+++||.|.+.+.+|+..+
T Consensus 81 ~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R 124 (210)
T TIGR01351 81 FILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGR 124 (210)
T ss_pred EEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCC
Confidence 11222 2334334334443 33 5789999999999999865
No 490
>PRK08233 hypothetical protein; Provisional
Probab=98.34 E-value=2.1e-05 Score=64.18 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhhhC
Q 025114 56 SGRCIYLVGMMGSGKTTVGKILSGVLG 82 (257)
Q Consensus 56 ~Ge~i~LiG~nGaGKSTLlk~Lag~lg 82 (257)
++.+|+|.|++|||||||.+.|+..++
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 467899999999999999999999885
No 491
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.34 E-value=1.4e-06 Score=73.86 Aligned_cols=34 Identities=35% Similarity=0.467 Sum_probs=26.8
Q ss_pred cccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC
Q 025114 45 KNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG 82 (257)
Q Consensus 45 ~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg 82 (257)
+...+.+.+ .+.+|+||||+||||++-.|.=.++
T Consensus 16 ~~~~~~~~~----~~~~i~G~NGsGKS~ileAi~~~l~ 49 (220)
T PF02463_consen 16 KNAELSFSP----GLNVIVGPNGSGKSNILEAIEFVLG 49 (220)
T ss_dssp CEEEEETTS----SEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEecCC----CCEEEEcCCCCCHHHHHHHHHHHHH
Confidence 456666664 5899999999999999999964443
No 492
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.31 E-value=7.4e-07 Score=81.76 Aligned_cols=52 Identities=15% Similarity=0.089 Sum_probs=47.2
Q ss_pred eEEecceeeeeCc-ccccc-----------ccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC
Q 025114 28 VLESGNVHAPIDE-AQVLK-----------NKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG 82 (257)
Q Consensus 28 ~l~~~~l~~~~~~-~~~l~-----------~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg 82 (257)
.++++||++.|.+ +.+|+ |+++.|.+ |+.++|+||+|||||||++.|+..+.
T Consensus 130 ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~---Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 130 RVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGK---GQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CeEEEEeeecCCCccceeecCccccceeeeeeEEEeCC---CCEEEEECCCCCChhHHHHHHHHhhc
Confidence 5899999999964 56886 99999999 99999999999999999999998764
No 493
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.29 E-value=6.9e-07 Score=68.27 Aligned_cols=33 Identities=39% Similarity=0.607 Sum_probs=30.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhCCceecchhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTL 91 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~ 91 (257)
+|+|.|++||||||+++.|+..+|..+++.|++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~ 33 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDL 33 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecce
Confidence 589999999999999999999999999988884
No 494
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.29 E-value=1e-06 Score=59.71 Aligned_cols=36 Identities=28% Similarity=0.529 Sum_probs=28.3
Q ss_pred ccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 44 LKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 44 l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
+++.++++.+ .|.++.|.|+||||||||+..|.=.+
T Consensus 12 f~~~~~~~~~--~g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 12 FDGETIDFDP--RGDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred cCCeEEeecC--CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4455666664 26799999999999999999987654
No 495
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.27 E-value=3.8e-06 Score=78.10 Aligned_cols=117 Identities=12% Similarity=0.149 Sum_probs=73.1
Q ss_pred eEEecceeeeeC-ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHH
Q 025114 28 VLESGNVHAPID-EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFK 106 (257)
Q Consensus 28 ~l~~~~l~~~~~-~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~ 106 (257)
.++.+.++..|. +..+++.+ |++.. |+.++|+|+||+|||||+++|++...... ..+.-....+.++.+++.
T Consensus 130 ~~~r~~i~~~l~TGiraID~l-l~I~~---Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~---gvI~~iGerg~ev~e~~~ 202 (432)
T PRK06793 130 AFEREEITDVFETGIKSIDSM-LTIGI---GQKIGIFAGSGVGKSTLLGMIAKNAKADI---NVISLVGERGREVKDFIR 202 (432)
T ss_pred chheechhhccCCCCEEEecc-ceecC---CcEEEEECCCCCChHHHHHHHhccCCCCe---EEEEeCCCCcccHHHHHH
Confidence 466777887775 45688885 99999 99999999999999999999999764211 000000011344554433
Q ss_pred HhCchHHHHHHHHHHHHhcccC----ccccccChhHhHHHHHHH-----Hhh---CCcEEEEECCHHHH
Q 025114 107 LYGEGFFREKETEVLQKLSLMR----QLVVSTGGGAVTRPINWR-----YMQ---KGISVWLDVPLEAL 163 (257)
Q Consensus 107 ~~g~~~~~~~~~~~l~~l~~~~----~~v~~lsgG~~qr~~~a~-----~l~---~~~vl~LDep~~~L 163 (257)
. .+..-++.. ......|.+++.+...++ .++ ++.++++|++|...
T Consensus 203 ~------------~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a 259 (432)
T PRK06793 203 K------------ELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFA 259 (432)
T ss_pred H------------HhhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHH
Confidence 1 111111111 223344667777775443 332 47888999999776
No 496
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.26 E-value=7.8e-06 Score=67.59 Aligned_cols=111 Identities=23% Similarity=0.261 Sum_probs=63.5
Q ss_pred EEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCC-----HHHHHHHhCchHHHHHHHHHH-HHhccc---Ccc
Q 025114 60 IYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTS-----VAEIFKLYGEGFFREKETEVL-QKLSLM---RQL 130 (257)
Q Consensus 60 i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~-----v~e~~~~~g~~~~~~~~~~~l-~~l~~~---~~~ 130 (257)
|.|+|++||||||+.+.|+..+|..+++.++++.......+ +.+.+.. +.....+....++ ..+... ...
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~l~~~~~~~~~ 80 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDS-GKLVPDEIVIKLLKERLKKPDCKKGF 80 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHc-CCccCHHHHHHHHHHHHhcccccCCE
Confidence 78999999999999999999999999998887755432211 1222221 1111111111222 112111 112
Q ss_pred ccc-cChhHhHHHHHHHHhh---C-CcEEEEECCHHHHHHHHHhcC
Q 025114 131 VVS-TGGGAVTRPINWRYMQ---K-GISVWLDVPLEALAQRIAAVG 171 (257)
Q Consensus 131 v~~-lsgG~~qr~~~a~~l~---~-~~vl~LDep~~~L~~rl~~~g 171 (257)
+.. ......|...+...+. . ..+++||.|.+.+.+|+..++
T Consensus 81 vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~ 126 (194)
T cd01428 81 ILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRR 126 (194)
T ss_pred EEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 211 1122334444444443 3 457899999999999998654
No 497
>PRK07261 topology modulation protein; Provisional
Probab=98.25 E-value=5.7e-06 Score=67.73 Aligned_cols=34 Identities=35% Similarity=0.480 Sum_probs=30.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhCCceecchhhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLI 92 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~ 92 (257)
.++|+|++|||||||.+.|+..++.+.+..|.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~ 35 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH 35 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence 5899999999999999999999988888777653
No 498
>PRK14528 adenylate kinase; Provisional
Probab=98.22 E-value=9.5e-05 Score=61.31 Aligned_cols=38 Identities=26% Similarity=0.417 Sum_probs=33.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhc
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQS 95 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~ 95 (257)
..+.|+||+||||||+.+.|+..+|...+..++++...
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~ 39 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREA 39 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHH
Confidence 35889999999999999999999999999888876553
No 499
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.22 E-value=4.8e-06 Score=72.31 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=27.6
Q ss_pred eEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC
Q 025114 49 QEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG 82 (257)
Q Consensus 49 l~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg 82 (257)
+.+.. |+.++|+||+|+|||||++.|++.+.
T Consensus 11 ~~i~~---Gqr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 11 APIGK---GQRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred cccCC---CCEEEEECCCCCCHHHHHHHHHhccc
Confidence 35666 99999999999999999999998764
No 500
>PLN02674 adenylate kinase
Probab=98.21 E-value=1e-05 Score=69.98 Aligned_cols=113 Identities=18% Similarity=0.167 Sum_probs=70.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCC-----CCCHHHHHHHhCchHHHHHHHHHHH-HhcccC-c
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVD-----GTSVAEIFKLYGEGFFREKETEVLQ-KLSLMR-Q 129 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~-----~~~v~e~~~~~g~~~~~~~~~~~l~-~l~~~~-~ 129 (257)
...+.|+||+||||||+.+.|+..+|...++..+++..... |..+.+++. .|+....+....++. .+.... .
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~-~G~lvpd~iv~~lv~~~l~~~~~~ 109 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD-KGELVSDDLVVGIIDEAMKKPSCQ 109 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHH-cCCccCHHHHHHHHHHHHhCcCcC
Confidence 56799999999999999999999999999998888765431 334555554 454444444444333 222111 1
Q ss_pred cccccChh---HhHHHHHHHHhh----CC-cEEEEECCHHHHHHHHHhc
Q 025114 130 LVVSTGGG---AVTRPINWRYMQ----KG-ISVWLDVPLEALAQRIAAV 170 (257)
Q Consensus 130 ~v~~lsgG---~~qr~~~a~~l~----~~-~vl~LDep~~~L~~rl~~~ 170 (257)
...-|.|- ..|-..+...+. .+ .+++||.|.+.+++|+..+
T Consensus 110 ~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR 158 (244)
T PLN02674 110 KGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGR 158 (244)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcc
Confidence 11222221 223333333332 33 4789999999999999754
Done!