Query 025114
Match_columns 257
No_of_seqs 364 out of 2480
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 04:01:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025114.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025114hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g1u_C Hemin import ATP-bindin 100.0 9.5E-36 3.2E-40 259.4 0.4 193 25-223 8-247 (266)
2 3gfo_A Cobalt import ATP-bindi 100.0 3.1E-35 1E-39 257.3 2.7 191 26-222 5-242 (275)
3 3rlf_A Maltose/maltodextrin im 100.0 4.7E-35 1.6E-39 265.9 0.4 181 26-212 1-222 (381)
4 1g6h_A High-affinity branched- 100.0 2E-34 6.7E-39 250.0 2.5 179 25-209 4-238 (257)
5 3fvq_A Fe(3+) IONS import ATP- 100.0 9.8E-35 3.3E-39 262.1 0.6 180 27-212 3-227 (359)
6 3tui_C Methionine import ATP-b 100.0 3E-34 1E-38 259.2 0.3 183 25-213 21-253 (366)
7 1ji0_A ABC transporter; ATP bi 100.0 2.6E-34 8.9E-39 246.8 -0.2 176 26-207 4-222 (240)
8 2ihy_A ABC transporter, ATP-bi 100.0 8.7E-34 3E-38 248.6 2.9 191 26-222 19-261 (279)
9 1vpl_A ABC transporter, ATP-bi 100.0 4.3E-34 1.5E-38 247.7 0.1 180 24-209 11-231 (256)
10 2olj_A Amino acid ABC transpor 100.0 6.1E-34 2.1E-38 247.6 0.3 176 27-208 23-243 (263)
11 2it1_A 362AA long hypothetical 100.0 9E-34 3.1E-38 256.4 1.3 180 27-212 2-222 (362)
12 2pcj_A ABC transporter, lipopr 100.0 1.2E-33 3.9E-38 240.4 0.5 167 26-199 2-214 (224)
13 1g29_1 MALK, maltose transport 100.0 1.1E-33 3.6E-38 257.1 0.2 180 27-212 2-228 (372)
14 1b0u_A Histidine permease; ABC 100.0 1E-33 3.5E-38 246.1 -0.1 177 27-209 5-238 (262)
15 2yyz_A Sugar ABC transporter, 100.0 1.1E-33 3.8E-38 255.5 -0.3 180 27-212 2-222 (359)
16 1oxx_K GLCV, glucose, ABC tran 100.0 9.7E-34 3.3E-38 255.7 -0.7 180 27-212 2-229 (353)
17 1z47_A CYSA, putative ABC-tran 100.0 1.9E-33 6.7E-38 253.5 0.4 182 25-212 11-234 (355)
18 1v43_A Sugar-binding transport 100.0 1.6E-33 5.3E-38 255.7 -0.4 181 26-212 9-230 (372)
19 2nq2_C Hypothetical ABC transp 100.0 5E-33 1.7E-37 240.6 0.6 189 27-222 3-226 (253)
20 3tif_A Uncharacterized ABC tra 100.0 9.5E-33 3.3E-37 236.4 0.9 168 28-202 1-223 (235)
21 2d2e_A SUFC protein; ABC-ATPas 100.0 2.1E-32 7.3E-37 236.2 2.3 169 27-201 2-221 (250)
22 3d31_A Sulfate/molybdate ABC t 100.0 1.1E-32 3.7E-37 248.2 -0.2 177 28-212 1-216 (348)
23 2yz2_A Putative ABC transporte 100.0 2.5E-32 8.7E-37 237.8 2.1 179 28-212 2-226 (266)
24 2zu0_C Probable ATP-dependent 100.0 7.1E-32 2.4E-36 235.1 2.0 178 25-208 17-249 (267)
25 3nwj_A ATSK2; P loop, shikimat 100.0 1E-29 3.5E-34 219.4 14.8 229 27-255 16-247 (250)
26 1sgw_A Putative ABC transporte 100.0 7.3E-31 2.5E-35 221.6 7.3 162 25-194 7-203 (214)
27 2qi9_C Vitamin B12 import ATP- 100.0 1.4E-31 4.7E-36 231.0 -2.0 175 27-211 3-220 (249)
28 2onk_A Molybdate/tungstate ABC 100.0 3.9E-31 1.3E-35 227.0 -1.4 173 28-209 1-212 (240)
29 2ff7_A Alpha-hemolysin translo 100.0 4.5E-31 1.5E-35 227.6 -1.9 174 28-209 7-228 (247)
30 1mv5_A LMRA, multidrug resista 100.0 4.4E-31 1.5E-35 227.0 -2.5 151 28-182 1-199 (243)
31 3gd7_A Fusion complex of cysti 100.0 2.2E-30 7.5E-35 236.4 -0.2 179 26-212 17-241 (390)
32 2ghi_A Transport protein; mult 100.0 2.1E-30 7E-35 225.0 -0.7 169 27-203 16-232 (260)
33 2ixe_A Antigen peptide transpo 100.0 1.9E-30 6.6E-35 226.5 -1.6 169 27-202 15-234 (271)
34 3nh6_A ATP-binding cassette SU 100.0 9.7E-31 3.3E-35 231.8 -4.3 178 27-212 52-276 (306)
35 2cbz_A Multidrug resistance-as 99.9 4E-30 1.4E-34 220.3 -1.6 170 27-203 2-207 (237)
36 2pjz_A Hypothetical protein ST 99.9 2.2E-29 7.5E-34 218.9 1.0 176 28-211 1-213 (263)
37 2pze_A Cystic fibrosis transme 99.9 1.6E-29 5.6E-34 215.5 -5.1 153 27-183 5-192 (229)
38 3b5x_A Lipid A export ATP-bind 99.9 9.8E-28 3.3E-32 229.7 1.4 175 27-209 340-563 (582)
39 3b60_A Lipid A export ATP-bind 99.9 1.2E-27 4E-32 229.2 -1.6 174 27-208 340-562 (582)
40 4a82_A Cystic fibrosis transme 99.9 2.5E-27 8.6E-32 226.7 -2.0 178 27-212 338-563 (578)
41 2yl4_A ATP-binding cassette SU 99.9 2.2E-27 7.6E-32 227.8 -3.0 176 29-212 342-569 (595)
42 3qf4_B Uncharacterized ABC tra 99.9 1.4E-27 4.8E-32 229.3 -5.3 177 27-211 353-576 (598)
43 3qf4_A ABC transporter, ATP-bi 99.9 2.3E-27 7.8E-32 227.4 -4.6 176 27-210 340-563 (587)
44 2bbs_A Cystic fibrosis transme 99.9 6E-27 2.1E-31 206.1 -1.9 174 27-211 39-245 (290)
45 3bk7_A ABC transporter ATP-bin 99.9 4.2E-25 1.4E-29 212.0 7.7 155 27-188 82-295 (607)
46 3ozx_A RNAse L inhibitor; ATP 99.9 3E-25 1E-29 210.4 6.0 165 26-197 267-459 (538)
47 1yqt_A RNAse L inhibitor; ATP- 99.9 8.2E-25 2.8E-29 207.6 7.6 158 29-196 21-230 (538)
48 1yqt_A RNAse L inhibitor; ATP- 99.9 7.6E-25 2.6E-29 207.8 6.9 166 26-198 285-476 (538)
49 3bk7_A ABC transporter ATP-bin 99.9 1.2E-24 4E-29 208.9 8.2 165 26-197 355-545 (607)
50 3vaa_A Shikimate kinase, SK; s 99.9 3.8E-23 1.3E-27 171.7 15.1 186 40-247 11-198 (199)
51 2iw3_A Elongation factor 3A; a 99.9 4.9E-25 1.7E-29 219.4 1.8 170 26-202 669-976 (986)
52 3j16_B RLI1P; ribosome recycli 99.9 5.2E-25 1.8E-29 211.2 -0.9 180 32-214 350-560 (608)
53 2iw3_A Elongation factor 3A; a 99.9 2.2E-24 7.4E-29 214.8 3.4 168 28-202 435-623 (986)
54 3g5u_A MCG1178, multidrug resi 99.9 1.1E-24 3.7E-29 224.5 -1.4 177 28-212 387-612 (1284)
55 4f4c_A Multidrug resistance pr 99.9 1.9E-24 6.5E-29 223.2 -3.0 179 28-213 1076-1304(1321)
56 3g5u_A MCG1178, multidrug resi 99.9 2.5E-24 8.5E-29 221.8 -2.3 179 27-212 1029-1257(1284)
57 3j16_B RLI1P; ribosome recycli 99.9 4.2E-23 1.4E-27 198.0 5.2 158 32-197 81-294 (608)
58 4f4c_A Multidrug resistance pr 99.9 6.8E-24 2.3E-28 219.1 -0.5 177 28-211 415-639 (1321)
59 3ux8_A Excinuclease ABC, A sub 99.9 5.1E-24 1.8E-28 207.0 -2.8 165 40-211 30-296 (670)
60 3ux8_A Excinuclease ABC, A sub 99.9 7.2E-23 2.4E-27 199.0 1.9 109 99-211 505-638 (670)
61 3ozx_A RNAse L inhibitor; ATP 99.8 1.2E-21 4.1E-26 185.7 5.8 155 32-196 3-209 (538)
62 2vf7_A UVRA2, excinuclease ABC 99.8 4.8E-22 1.6E-26 196.0 -2.9 78 116-197 709-805 (842)
63 4gp7_A Metallophosphoesterase; 99.8 3.8E-20 1.3E-24 150.3 4.5 116 46-168 1-119 (171)
64 3pih_A Uvrabc system protein A 99.8 7.3E-21 2.5E-25 189.0 0.0 93 115-211 783-900 (916)
65 3trf_A Shikimate kinase, SK; a 99.8 4.3E-18 1.5E-22 138.8 15.8 171 57-247 5-177 (185)
66 2r6f_A Excinuclease ABC subuni 99.8 1.4E-20 4.8E-25 186.5 -1.4 90 117-210 825-939 (972)
67 2ygr_A Uvrabc system protein A 99.8 2.6E-20 9E-25 185.1 -0.4 76 118-197 844-938 (993)
68 2npi_A Protein CLP1; CLP1-PCF1 99.8 3.9E-22 1.3E-26 185.7 -14.8 146 26-182 116-299 (460)
69 1kag_A SKI, shikimate kinase I 99.7 2.1E-17 7.2E-22 133.2 11.8 166 57-243 4-171 (173)
70 1via_A Shikimate kinase; struc 99.7 8.5E-16 2.9E-20 124.3 12.7 158 59-243 6-165 (175)
71 4aby_A DNA repair protein RECN 99.7 9E-17 3.1E-21 147.1 7.4 39 40-82 47-85 (415)
72 1zuh_A Shikimate kinase; alpha 99.6 4.2E-15 1.4E-19 119.4 13.5 158 57-242 7-167 (168)
73 3b85_A Phosphate starvation-in 99.6 6.3E-18 2.2E-22 141.7 -3.5 130 36-184 8-161 (208)
74 2jeo_A Uridine-cytidine kinase 99.6 9.6E-17 3.3E-21 137.2 2.7 137 37-180 8-164 (245)
75 2iyv_A Shikimate kinase, SK; t 99.6 1.3E-14 4.4E-19 118.1 13.8 164 58-243 3-167 (184)
76 3qf7_A RAD50; ABC-ATPase, ATPa 99.6 1.1E-16 3.9E-21 144.8 1.4 54 129-182 275-346 (365)
77 2v9p_A Replication protein E1; 99.6 2.7E-19 9.2E-24 158.1 -16.6 158 28-209 101-262 (305)
78 2pt7_A CAG-ALFA; ATPase, prote 99.6 5.5E-17 1.9E-21 145.1 -2.3 132 31-201 151-291 (330)
79 1e6c_A Shikimate kinase; phosp 99.6 5.5E-14 1.9E-18 112.9 14.9 164 58-243 3-169 (173)
80 2pt5_A Shikimate kinase, SK; a 99.5 1.6E-13 5.5E-18 109.7 15.0 161 59-244 2-163 (168)
81 3aez_A Pantothenate kinase; tr 99.5 7.1E-17 2.4E-21 143.2 -6.0 128 27-163 42-207 (312)
82 1ye8_A Protein THEP1, hypothet 99.5 5.6E-15 1.9E-19 120.8 4.5 113 59-179 2-138 (178)
83 2obl_A ESCN; ATPase, hydrolase 99.5 1.2E-15 4.2E-20 137.2 0.6 168 26-207 43-249 (347)
84 4eun_A Thermoresistant glucoki 99.5 9.7E-14 3.3E-18 114.8 10.5 168 43-246 18-195 (200)
85 1tq4_A IIGP1, interferon-induc 99.5 1.9E-16 6.5E-21 145.3 -7.0 117 41-163 36-197 (413)
86 2dpy_A FLII, flagellum-specifi 99.5 1.4E-16 4.7E-21 147.5 -8.1 166 27-207 130-338 (438)
87 3b9q_A Chloroplast SRP recepto 99.4 4.4E-15 1.5E-19 131.1 -1.1 145 33-188 79-263 (302)
88 1znw_A Guanylate kinase, GMP k 99.4 4.1E-16 1.4E-20 129.9 -7.8 41 40-85 8-48 (207)
89 3thx_B DNA mismatch repair pro 99.4 1.9E-14 6.4E-19 143.3 2.5 131 28-183 640-798 (918)
90 1tf7_A KAIC; homohexamer, hexa 99.4 4.2E-14 1.4E-18 133.7 4.4 149 28-200 257-443 (525)
91 3asz_A Uridine kinase; cytidin 99.4 1.6E-15 5.6E-20 126.0 -5.0 105 57-162 6-123 (211)
92 3uie_A Adenylyl-sulfate kinase 99.4 2.4E-12 8.2E-17 106.3 13.5 127 32-167 3-140 (200)
93 1knq_A Gluconate kinase; ALFA/ 99.4 1.4E-12 4.9E-17 105.0 11.7 108 56-171 7-125 (175)
94 1tf7_A KAIC; homohexamer, hexa 99.4 2.1E-14 7.2E-19 135.7 -0.7 61 26-89 10-77 (525)
95 2eyu_A Twitching motility prot 99.4 1.8E-13 6.1E-18 118.4 5.0 131 28-198 5-146 (261)
96 1e69_A Chromosome segregation 99.4 2.4E-13 8.2E-18 120.8 5.1 58 129-188 215-288 (322)
97 2ehv_A Hypothetical protein PH 99.4 1.3E-12 4.6E-17 110.5 8.1 48 27-80 5-55 (251)
98 2og2_A Putative signal recogni 99.4 1.1E-13 3.7E-18 124.8 1.3 133 45-188 148-320 (359)
99 2o8b_B DNA mismatch repair pro 99.3 3.1E-14 1.1E-18 143.5 -2.7 137 26-185 748-916 (1022)
100 1htw_A HI0065; nucleotide-bind 99.3 6.1E-14 2.1E-18 112.4 -0.7 50 29-81 8-57 (158)
101 3thx_A DNA mismatch repair pro 99.3 6.2E-13 2.1E-17 132.7 4.3 145 28-201 631-801 (934)
102 1y63_A LMAJ004144AAA protein; 99.3 2.1E-12 7.1E-17 105.4 5.6 173 46-249 2-182 (184)
103 1ewq_A DNA mismatch repair pro 99.3 1.1E-12 3.8E-17 128.6 4.2 125 28-180 550-697 (765)
104 3qkt_A DNA double-strand break 99.3 6.8E-12 2.3E-16 112.2 7.7 53 129-181 244-314 (339)
105 1pui_A ENGB, probable GTP-bind 99.2 2.5E-12 8.7E-17 106.0 3.9 48 28-81 3-50 (210)
106 1wb9_A DNA mismatch repair pro 99.2 2E-12 6.9E-17 127.4 3.0 130 28-183 577-732 (800)
107 1cr0_A DNA primase/helicase; R 99.2 6E-12 2E-16 110.0 5.4 38 41-81 22-59 (296)
108 3jvv_A Twitching mobility prot 99.2 1.9E-11 6.5E-16 110.1 8.6 149 41-222 103-274 (356)
109 3sop_A Neuronal-specific septi 99.2 7.7E-14 2.6E-18 121.2 -6.9 121 59-184 4-153 (270)
110 3kb2_A SPBC2 prophage-derived 99.2 3E-10 1E-14 90.4 14.2 154 58-247 2-169 (173)
111 3fdi_A Uncharacterized protein 99.2 6.6E-10 2.2E-14 92.2 14.7 166 57-244 6-198 (201)
112 3lw7_A Adenylate kinase relate 99.2 1E-09 3.5E-14 87.1 14.7 160 59-246 3-178 (179)
113 3cr8_A Sulfate adenylyltranfer 99.2 4.9E-11 1.7E-15 113.1 8.0 161 50-245 365-540 (552)
114 2c95_A Adenylate kinase 1; tra 99.1 6.5E-10 2.2E-14 90.5 13.1 171 57-245 9-194 (196)
115 3tr0_A Guanylate kinase, GMP k 99.1 4.2E-10 1.4E-14 92.4 12.0 37 48-87 1-37 (205)
116 3t61_A Gluconokinase; PSI-biol 99.1 3.4E-10 1.2E-14 93.2 11.4 155 57-245 18-180 (202)
117 3iij_A Coilin-interacting nucl 99.1 3.5E-11 1.2E-15 97.3 5.2 153 57-249 11-178 (180)
118 3cm0_A Adenylate kinase; ATP-b 99.1 5.4E-10 1.8E-14 90.4 12.3 112 57-170 4-126 (186)
119 2bdt_A BH3686; alpha-beta prot 99.1 2.1E-10 7.3E-15 93.3 9.8 37 57-93 2-39 (189)
120 1nlf_A Regulatory protein REPA 99.1 9.2E-11 3.2E-15 101.7 7.5 126 51-182 27-182 (279)
121 3hdt_A Putative kinase; struct 99.1 8.6E-10 2.9E-14 93.0 13.2 156 57-244 14-218 (223)
122 4a74_A DNA repair and recombin 99.1 8.6E-11 2.9E-15 98.0 6.7 47 29-81 2-49 (231)
123 1qhx_A CPT, protein (chloramph 99.1 9.9E-11 3.4E-15 94.2 6.7 116 56-171 2-134 (178)
124 2qnr_A Septin-2, protein NEDD5 99.1 6.6E-13 2.3E-17 117.0 -6.8 40 32-80 2-41 (301)
125 1jjv_A Dephospho-COA kinase; P 99.1 5.7E-10 1.9E-14 92.0 11.0 53 58-111 3-57 (206)
126 2w0m_A SSO2452; RECA, SSPF, un 99.1 8.9E-11 3E-15 97.8 5.1 39 40-81 8-47 (235)
127 1aky_A Adenylate kinase; ATP:A 99.1 1.6E-09 5.4E-14 90.4 12.6 113 57-170 4-132 (220)
128 1zak_A Adenylate kinase; ATP:A 99.1 9.9E-10 3.4E-14 91.8 11.3 181 57-252 5-218 (222)
129 2if2_A Dephospho-COA kinase; a 99.1 3E-10 1E-14 93.5 7.8 51 59-110 3-55 (204)
130 2i3b_A HCR-ntpase, human cance 99.1 4.8E-12 1.6E-16 104.2 -3.1 31 57-88 1-34 (189)
131 2bbw_A Adenylate kinase 4, AK4 99.1 2E-09 6.8E-14 91.5 13.0 36 57-92 27-62 (246)
132 1z6g_A Guanylate kinase; struc 99.0 7.9E-11 2.7E-15 98.8 3.2 124 41-171 10-159 (218)
133 3be4_A Adenylate kinase; malar 99.0 3.7E-09 1.3E-13 88.2 12.9 113 57-170 5-132 (217)
134 1zd8_A GTP:AMP phosphotransfer 99.0 3.5E-09 1.2E-13 88.8 12.1 113 57-170 7-128 (227)
135 2qm8_A GTPase/ATPase; G protei 99.0 2.4E-11 8.3E-16 108.6 -1.5 53 26-81 27-79 (337)
136 1sq5_A Pantothenate kinase; P- 99.0 4.4E-11 1.5E-15 105.6 -1.1 51 27-82 36-105 (308)
137 2qag_B Septin-6, protein NEDD5 99.0 1.2E-10 4E-15 107.0 1.3 50 27-81 15-66 (427)
138 2vli_A Antibiotic resistance p 98.9 4.5E-09 1.5E-13 84.6 10.1 156 56-247 4-174 (183)
139 2bwj_A Adenylate kinase 5; pho 98.9 2E-08 6.9E-13 81.7 13.8 171 57-245 12-197 (199)
140 3ec2_A DNA replication protein 98.9 1.4E-09 4.7E-14 87.9 6.2 31 48-81 32-62 (180)
141 1ukz_A Uridylate kinase; trans 98.9 9.4E-09 3.2E-13 84.4 10.9 170 57-244 15-201 (203)
142 1qf9_A UMP/CMP kinase, protein 98.9 2.1E-08 7.3E-13 80.9 12.7 169 57-244 6-191 (194)
143 1ak2_A Adenylate kinase isoenz 98.9 7.6E-08 2.6E-12 81.0 15.7 113 57-170 16-143 (233)
144 1tev_A UMP-CMP kinase; ploop, 98.9 1.8E-08 6E-13 81.6 11.2 39 56-94 2-40 (196)
145 2rhm_A Putative kinase; P-loop 98.8 1E-08 3.5E-13 83.1 8.9 38 57-94 5-42 (193)
146 2cdn_A Adenylate kinase; phosp 98.8 5.5E-08 1.9E-12 79.7 13.2 114 57-171 20-148 (201)
147 3lnc_A Guanylate kinase, GMP k 98.8 9.9E-10 3.4E-14 92.4 2.4 40 40-82 13-53 (231)
148 1rj9_A FTSY, signal recognitio 98.8 1.2E-09 4.1E-14 96.3 2.6 25 57-81 102-126 (304)
149 1vht_A Dephospho-COA kinase; s 98.8 1.4E-08 4.7E-13 84.4 9.0 53 57-110 4-58 (218)
150 1kht_A Adenylate kinase; phosp 98.8 2.3E-08 7.9E-13 80.7 10.0 38 55-92 1-43 (192)
151 1lw7_A Transcriptional regulat 98.8 1E-08 3.5E-13 92.3 7.4 40 44-84 158-197 (365)
152 2ga8_A Hypothetical 39.9 kDa p 98.8 3.2E-10 1.1E-14 101.6 -2.5 75 42-121 10-106 (359)
153 3euj_A Chromosome partition pr 98.8 4.5E-09 1.5E-13 97.9 4.9 48 40-91 16-67 (483)
154 2ewv_A Twitching motility prot 98.8 4.6E-09 1.6E-13 95.0 4.9 121 43-198 127-257 (372)
155 3a4m_A L-seryl-tRNA(SEC) kinas 98.8 3.3E-08 1.1E-12 84.8 10.0 107 57-171 4-121 (260)
156 2gza_A Type IV secretion syste 98.7 9.7E-10 3.3E-14 99.1 -0.2 141 30-200 137-302 (361)
157 2jaq_A Deoxyguanosine kinase; 98.7 9.9E-08 3.4E-12 77.7 11.9 74 152-246 127-202 (205)
158 3fb4_A Adenylate kinase; psych 98.7 3.6E-07 1.2E-11 75.5 15.4 111 59-170 2-127 (216)
159 1zp6_A Hypothetical protein AT 98.7 6.2E-09 2.1E-13 84.5 4.5 41 50-93 5-47 (191)
160 1pzn_A RAD51, DNA repair and r 98.7 5.7E-09 2E-13 93.6 4.6 37 42-81 118-155 (349)
161 3a8t_A Adenylate isopentenyltr 98.7 6.6E-09 2.3E-13 92.5 4.9 113 57-170 40-194 (339)
162 2kjq_A DNAA-related protein; s 98.7 6E-09 2E-13 82.3 4.1 25 57-81 36-60 (149)
163 3dl0_A Adenylate kinase; phosp 98.7 3.2E-07 1.1E-11 75.9 14.7 37 59-95 2-38 (216)
164 1vma_A Cell division protein F 98.7 2.3E-08 7.7E-13 88.2 7.8 92 46-160 96-196 (306)
165 2vf7_A UVRA2, excinuclease ABC 98.7 3.2E-10 1.1E-14 112.0 -4.8 89 120-212 362-474 (842)
166 2qag_C Septin-7; cell cycle, c 98.7 5.2E-09 1.8E-13 96.1 3.3 47 27-82 10-56 (418)
167 1odf_A YGR205W, hypothetical 3 98.7 2.1E-09 7.3E-14 94.1 0.5 103 57-164 31-166 (290)
168 4eaq_A DTMP kinase, thymidylat 98.7 2.2E-08 7.6E-13 84.5 6.8 40 43-82 12-51 (229)
169 3ake_A Cytidylate kinase; CMP 98.7 1.5E-07 5.2E-12 77.0 11.4 36 59-94 4-39 (208)
170 3umf_A Adenylate kinase; rossm 98.7 1E-06 3.5E-11 73.8 16.4 112 57-170 29-153 (217)
171 2yvu_A Probable adenylyl-sulfa 98.7 1.3E-07 4.6E-12 76.4 10.6 36 57-92 13-53 (186)
172 2p5t_B PEZT; postsegregational 98.7 1.3E-07 4.3E-12 80.8 10.9 118 43-169 22-156 (253)
173 1e4v_A Adenylate kinase; trans 98.7 7.1E-07 2.4E-11 73.9 15.1 112 59-170 2-123 (214)
174 3kta_A Chromosome segregation 98.7 2.3E-08 7.8E-13 80.6 5.7 38 42-83 13-52 (182)
175 2cvh_A DNA repair and recombin 98.7 2E-08 6.9E-13 82.9 5.3 36 41-79 6-42 (220)
176 2h92_A Cytidylate kinase; ross 98.7 3.8E-09 1.3E-13 87.8 0.7 38 56-93 2-39 (219)
177 2qor_A Guanylate kinase; phosp 98.6 5.8E-08 2E-12 80.0 7.8 26 57-82 12-37 (204)
178 2pbr_A DTMP kinase, thymidylat 98.6 3.5E-07 1.2E-11 73.8 12.2 32 59-90 2-36 (195)
179 1p9r_A General secretion pathw 98.6 3.9E-09 1.3E-13 96.9 0.5 49 28-81 143-191 (418)
180 1uf9_A TT1252 protein; P-loop, 98.6 4.4E-08 1.5E-12 79.9 6.7 37 57-94 8-44 (203)
181 4e22_A Cytidylate kinase; P-lo 98.6 1.9E-08 6.6E-13 85.9 4.5 46 41-92 17-62 (252)
182 3pih_A Uvrabc system protein A 98.6 4.7E-10 1.6E-14 111.8 -7.0 75 119-197 446-538 (916)
183 1in4_A RUVB, holliday junction 98.6 3.8E-09 1.3E-13 94.0 -0.8 54 27-83 17-77 (334)
184 2yhs_A FTSY, cell division pro 98.6 2.1E-08 7.1E-13 93.5 4.0 41 44-87 283-327 (503)
185 1ls1_A Signal recognition part 98.6 4.8E-08 1.6E-12 85.6 5.8 46 29-81 77-122 (295)
186 2ze6_A Isopentenyl transferase 98.6 4.6E-08 1.6E-12 83.7 5.1 35 58-92 2-36 (253)
187 3tlx_A Adenylate kinase 2; str 98.6 3.2E-06 1.1E-10 71.6 16.5 114 57-171 29-157 (243)
188 1ixz_A ATP-dependent metallopr 98.6 6.7E-09 2.3E-13 88.4 -0.3 53 28-85 25-77 (254)
189 1iy2_A ATP-dependent metallopr 98.5 8.3E-09 2.8E-13 89.2 -0.3 53 28-85 49-101 (278)
190 2r6f_A Excinuclease ABC subuni 98.5 2.2E-09 7.5E-14 106.8 -4.5 89 120-212 487-599 (972)
191 2xb4_A Adenylate kinase; ATP-b 98.5 2.1E-07 7.3E-12 77.8 8.3 112 59-171 2-127 (223)
192 1ly1_A Polynucleotide kinase; 98.5 1E-07 3.6E-12 76.1 5.9 113 58-171 3-127 (181)
193 2pez_A Bifunctional 3'-phospho 98.5 4.2E-07 1.4E-11 73.0 9.3 36 56-91 4-44 (179)
194 1f2t_B RAD50 ABC-ATPase; DNA d 98.5 1.9E-08 6.6E-13 79.4 1.3 59 129-188 53-129 (148)
195 1uj2_A Uridine-cytidine kinase 98.5 1.3E-07 4.3E-12 80.6 6.5 37 57-93 22-68 (252)
196 2v54_A DTMP kinase, thymidylat 98.5 2.8E-07 9.5E-12 75.3 8.2 32 57-88 4-36 (204)
197 2x8a_A Nuclear valosin-contain 98.5 2.8E-08 9.5E-13 86.1 2.2 45 36-85 28-72 (274)
198 1nks_A Adenylate kinase; therm 98.5 1.3E-06 4.6E-11 70.2 11.9 35 58-92 2-41 (194)
199 4i1u_A Dephospho-COA kinase; s 98.5 1.7E-06 5.9E-11 72.0 12.4 54 58-112 10-65 (210)
200 2rcn_A Probable GTPase ENGC; Y 98.5 5.7E-08 1.9E-12 87.3 3.6 36 43-82 205-240 (358)
201 2axn_A 6-phosphofructo-2-kinas 98.5 7.9E-07 2.7E-11 83.8 11.6 142 57-207 35-196 (520)
202 1s96_A Guanylate kinase, GMP k 98.5 6.3E-08 2.2E-12 81.2 3.7 31 49-82 11-41 (219)
203 2ygr_A Uvrabc system protein A 98.5 3.1E-09 1.1E-13 106.0 -5.1 63 120-182 504-584 (993)
204 3c8u_A Fructokinase; YP_612366 98.5 5.8E-08 2E-12 80.3 3.2 26 57-82 22-47 (208)
205 2o5v_A DNA replication and rep 98.5 8.5E-08 2.9E-12 86.3 4.4 44 30-79 5-48 (359)
206 1lvg_A Guanylate kinase, GMP k 98.5 6.6E-08 2.2E-12 79.6 3.1 26 57-82 4-29 (198)
207 3a00_A Guanylate kinase, GMP k 98.4 7E-08 2.4E-12 78.4 3.0 26 57-82 1-26 (186)
208 1cke_A CK, MSSA, protein (cyti 98.4 1.1E-07 3.8E-12 79.1 4.3 37 57-93 5-41 (227)
209 2j41_A Guanylate kinase; GMP, 98.4 9.3E-08 3.2E-12 78.2 3.7 30 49-81 1-30 (207)
210 1qhl_A Protein (cell division 98.4 1.2E-08 4E-13 86.3 -2.0 44 28-82 9-52 (227)
211 2plr_A DTMP kinase, probable t 98.4 2E-05 7E-10 64.2 17.3 28 56-83 3-30 (213)
212 2z0h_A DTMP kinase, thymidylat 98.4 1.1E-06 3.7E-11 71.2 9.4 30 59-88 2-34 (197)
213 3tqc_A Pantothenate kinase; bi 98.4 1.7E-08 5.8E-13 89.5 -1.7 47 33-82 65-117 (321)
214 1m7g_A Adenylylsulfate kinase; 98.4 1.9E-07 6.7E-12 77.2 4.9 41 49-92 20-66 (211)
215 3sr0_A Adenylate kinase; phosp 98.4 9.5E-06 3.2E-10 67.2 14.9 109 59-170 2-124 (206)
216 2grj_A Dephospho-COA kinase; T 98.4 1.9E-07 6.4E-12 76.8 4.0 54 57-111 12-65 (192)
217 1x6v_B Bifunctional 3'-phospho 98.4 3.5E-07 1.2E-11 87.7 6.1 106 57-168 52-170 (630)
218 1kgd_A CASK, peripheral plasma 98.4 2E-07 6.9E-12 75.3 3.8 27 56-82 4-30 (180)
219 3zvl_A Bifunctional polynucleo 98.3 1.3E-06 4.5E-11 80.0 9.3 95 57-170 258-357 (416)
220 1svm_A Large T antigen; AAA+ f 98.3 1.5E-07 5E-12 85.3 2.8 41 41-84 156-196 (377)
221 2f6r_A COA synthase, bifunctio 98.3 5E-06 1.7E-10 72.1 12.4 37 57-94 75-111 (281)
222 1w1w_A Structural maintenance 98.3 3.9E-07 1.4E-11 83.6 5.1 46 28-82 6-51 (430)
223 2qt1_A Nicotinamide riboside k 98.3 2.5E-07 8.6E-12 76.1 3.3 43 47-92 14-57 (207)
224 1gvn_B Zeta; postsegregational 98.3 4.7E-06 1.6E-10 72.5 11.2 109 57-168 33-160 (287)
225 1q3t_A Cytidylate kinase; nucl 98.3 5.4E-07 1.8E-11 75.9 4.6 38 57-94 16-53 (236)
226 2oap_1 GSPE-2, type II secreti 98.3 1.3E-07 4.5E-12 88.9 0.6 39 41-82 247-285 (511)
227 3szr_A Interferon-induced GTP- 98.3 1.2E-07 4.1E-12 91.0 -0.0 49 27-81 9-69 (608)
228 2p67_A LAO/AO transport system 98.2 8.4E-08 2.9E-12 85.6 -1.2 52 27-81 29-80 (341)
229 3e70_C DPA, signal recognition 98.2 6.3E-07 2.2E-11 79.6 3.7 33 57-89 129-165 (328)
230 3crm_A TRNA delta(2)-isopenten 98.2 5E-07 1.7E-11 80.0 3.0 84 58-143 6-109 (323)
231 3tau_A Guanylate kinase, GMP k 98.2 7.5E-07 2.6E-11 73.6 3.8 27 57-83 8-34 (208)
232 4ad8_A DNA repair protein RECN 98.2 5.4E-07 1.9E-11 84.7 2.7 51 130-181 393-458 (517)
233 2vp4_A Deoxynucleoside kinase; 98.2 5E-07 1.7E-11 75.9 2.0 39 49-90 15-53 (230)
234 3gmt_A Adenylate kinase; ssgci 98.2 2.6E-06 8.7E-11 71.9 6.2 114 57-171 8-132 (230)
235 1nn5_A Similar to deoxythymidy 98.1 4.6E-06 1.6E-10 68.4 7.3 27 57-83 9-35 (215)
236 4edh_A DTMP kinase, thymidylat 98.1 0.00013 4.4E-09 60.6 15.9 28 55-82 4-31 (213)
237 2ce7_A Cell division protein F 98.1 1.4E-06 4.7E-11 81.2 4.1 54 29-87 26-79 (476)
238 3m6a_A ATP-dependent protease 98.1 3.6E-07 1.2E-11 86.5 0.1 55 28-86 83-137 (543)
239 3lda_A DNA repair protein RAD5 98.1 2.6E-06 9E-11 77.6 5.6 26 50-78 174-199 (400)
240 1bif_A 6-phosphofructo-2-kinas 98.1 1.2E-05 4E-10 74.7 9.7 147 57-213 39-206 (469)
241 1ltq_A Polynucleotide kinase; 98.1 7.7E-06 2.6E-10 70.9 7.8 37 58-94 3-40 (301)
242 3ney_A 55 kDa erythrocyte memb 98.1 2E-06 6.8E-11 70.9 3.7 26 57-82 19-44 (197)
243 3ice_A Transcription terminati 98.1 1.7E-06 5.7E-11 78.3 3.2 51 28-81 133-198 (422)
244 3r20_A Cytidylate kinase; stru 98.0 2.9E-06 9.8E-11 71.8 4.4 37 57-93 9-45 (233)
245 1u0l_A Probable GTPase ENGC; p 98.0 1.2E-06 4E-11 76.8 1.8 30 50-82 165-194 (301)
246 2dhr_A FTSH; AAA+ protein, hex 98.0 8.7E-07 3E-11 83.0 0.7 54 28-86 40-93 (499)
247 1t9h_A YLOQ, probable GTPase E 98.0 8E-07 2.8E-11 78.2 0.4 30 49-81 168-197 (307)
248 1udx_A The GTP-binding protein 98.0 1.4E-06 4.6E-11 79.9 1.8 132 44-179 147-306 (416)
249 1rz3_A Hypothetical protein rb 98.0 2.5E-06 8.6E-11 70.0 3.1 28 51-81 19-46 (201)
250 4tmk_A Protein (thymidylate ki 98.0 0.00016 5.6E-09 60.1 14.2 27 55-81 1-27 (213)
251 3lv8_A DTMP kinase, thymidylat 98.0 0.00011 3.8E-09 62.1 13.3 27 55-81 25-51 (236)
252 1zu4_A FTSY; GTPase, signal re 98.0 2.8E-06 9.5E-11 75.2 3.5 35 44-81 95-129 (320)
253 3k1j_A LON protease, ATP-depen 98.0 1E-06 3.5E-11 84.4 0.5 53 28-83 34-86 (604)
254 1f2t_A RAD50 ABC-ATPase; DNA d 97.9 7.4E-06 2.5E-10 64.3 4.6 33 45-81 15-47 (149)
255 2r6a_A DNAB helicase, replicat 97.9 2.2E-05 7.7E-10 72.4 8.5 38 41-81 190-227 (454)
256 2f1r_A Molybdopterin-guanine d 97.9 3.6E-06 1.2E-10 67.8 2.3 24 58-81 3-26 (171)
257 1p5z_B DCK, deoxycytidine kina 97.9 0.00032 1.1E-08 59.6 14.7 30 57-86 24-54 (263)
258 4hlc_A DTMP kinase, thymidylat 97.9 0.00045 1.5E-08 56.9 14.8 25 57-81 2-26 (205)
259 1sxj_C Activator 1 40 kDa subu 97.9 2.3E-06 7.9E-11 75.8 0.8 49 30-81 20-70 (340)
260 1n0w_A DNA repair protein RAD5 97.9 7.5E-06 2.6E-10 68.3 3.8 28 50-80 20-47 (243)
261 2yv5_A YJEQ protein; hydrolase 97.9 4.6E-06 1.6E-10 73.1 2.4 24 57-81 165-188 (302)
262 3v9p_A DTMP kinase, thymidylat 97.8 7.1E-05 2.4E-09 62.9 8.8 26 57-82 25-50 (227)
263 1nij_A Hypothetical protein YJ 97.8 6.4E-06 2.2E-10 72.6 2.0 48 131-181 139-189 (318)
264 4ad8_A DNA repair protein RECN 97.7 1E-05 3.5E-10 76.0 2.2 36 42-81 49-84 (517)
265 3d3q_A TRNA delta(2)-isopenten 97.7 2.1E-05 7.1E-10 70.1 3.7 34 58-91 8-41 (340)
266 1oix_A RAS-related protein RAB 97.7 2E-05 6.7E-10 63.8 3.2 23 59-81 31-53 (191)
267 2ffh_A Protein (FFH); SRP54, s 97.7 1.3E-05 4.3E-10 73.6 2.2 44 31-81 79-122 (425)
268 3kta_B Chromosome segregation 97.7 2.8E-05 9.5E-10 62.7 4.0 51 129-180 60-126 (173)
269 2wwf_A Thymidilate kinase, put 97.7 1.5E-05 5.1E-10 65.2 2.3 32 57-88 10-41 (212)
270 1lv7_A FTSH; alpha/beta domain 97.7 2.3E-05 8E-10 66.3 3.6 39 43-86 36-74 (257)
271 3qks_A DNA double-strand break 97.7 3.4E-05 1.2E-09 63.5 4.5 34 45-82 15-48 (203)
272 3t34_A Dynamin-related protein 97.7 1.1E-05 3.6E-10 72.2 1.4 44 31-80 11-57 (360)
273 1m8p_A Sulfate adenylyltransfe 97.7 7.8E-05 2.7E-09 70.9 7.4 105 57-167 396-513 (573)
274 2px0_A Flagellar biosynthesis 97.6 2.5E-05 8.5E-10 68.3 3.6 25 57-81 105-129 (296)
275 2f9l_A RAB11B, member RAS onco 97.6 2.5E-05 8.6E-10 63.3 3.3 23 59-81 7-29 (199)
276 1ni3_A YCHF GTPase, YCHF GTP-b 97.6 3.2E-05 1.1E-09 70.2 3.3 27 50-79 16-42 (392)
277 2dr3_A UPF0273 protein PH0284; 97.5 3.8E-05 1.3E-09 64.0 2.9 35 42-79 10-45 (247)
278 3auy_A DNA double-strand break 97.5 6.4E-05 2.2E-09 67.5 4.4 53 130-182 277-347 (371)
279 2qag_A Septin-2, protein NEDD5 97.5 1.4E-05 4.8E-10 71.8 -0.1 45 27-80 16-60 (361)
280 1j8m_F SRP54, signal recogniti 97.5 2E-05 6.9E-10 68.9 0.8 45 31-81 77-122 (297)
281 1f6b_A SAR1; gtpases, N-termin 97.5 1.9E-05 6.5E-10 64.2 0.3 40 36-79 7-47 (198)
282 4a1f_A DNAB helicase, replicat 97.5 6.6E-05 2.2E-09 66.8 3.7 104 41-160 33-137 (338)
283 1m2o_B GTP-binding protein SAR 97.5 6.4E-05 2.2E-09 60.6 3.3 34 42-79 12-45 (190)
284 1ypw_A Transitional endoplasmi 97.4 6.9E-05 2.3E-09 74.1 3.8 35 49-86 233-267 (806)
285 1g8f_A Sulfate adenylyltransfe 97.4 7.5E-05 2.6E-09 70.0 3.8 34 57-90 395-435 (511)
286 3cf0_A Transitional endoplasmi 97.4 8.2E-05 2.8E-09 64.8 3.6 35 49-86 44-78 (301)
287 2gj8_A MNME, tRNA modification 97.4 7.7E-05 2.6E-09 59.1 3.2 25 57-81 4-28 (172)
288 2o5v_A DNA replication and rep 97.4 2.7E-06 9.3E-11 76.5 -6.4 52 129-180 260-330 (359)
289 2www_A Methylmalonic aciduria 97.4 9.1E-05 3.1E-09 66.1 3.6 25 57-81 74-98 (349)
290 1a7j_A Phosphoribulokinase; tr 97.4 4E-05 1.4E-09 66.7 1.1 36 57-92 5-45 (290)
291 2wji_A Ferrous iron transport 97.3 9.2E-05 3.1E-09 58.1 2.9 23 58-80 4-26 (165)
292 2gks_A Bifunctional SAT/APS ki 97.3 0.00045 1.5E-08 65.3 7.8 37 57-93 372-413 (546)
293 3exa_A TRNA delta(2)-isopenten 97.3 0.00014 4.8E-09 64.0 3.8 36 56-91 2-37 (322)
294 1gtv_A TMK, thymidylate kinase 97.3 6.2E-05 2.1E-09 61.5 1.4 24 59-82 2-25 (214)
295 1np6_A Molybdopterin-guanine d 97.3 0.00015 5.1E-09 58.4 3.5 25 57-81 6-30 (174)
296 1ega_A Protein (GTP-binding pr 97.3 9.7E-05 3.3E-09 64.5 2.5 25 57-81 8-32 (301)
297 2qmh_A HPR kinase/phosphorylas 97.2 0.00022 7.6E-09 58.7 4.2 47 38-89 19-65 (205)
298 2wjg_A FEOB, ferrous iron tran 97.2 0.00017 6E-09 57.2 3.2 23 58-80 8-30 (188)
299 3hjn_A DTMP kinase, thymidylat 97.2 0.0025 8.6E-08 52.0 10.1 23 59-81 2-24 (197)
300 1ex7_A Guanylate kinase; subst 97.2 0.00017 6E-09 58.7 2.9 23 59-81 3-25 (186)
301 3foz_A TRNA delta(2)-isopenten 97.2 0.00017 5.9E-09 63.3 3.0 34 57-90 10-43 (316)
302 1w1w_A Structural maintenance 97.1 0.00019 6.6E-09 65.6 3.2 51 130-180 330-396 (430)
303 2zej_A Dardarin, leucine-rich 97.1 0.00019 6.6E-09 57.2 2.6 22 59-80 4-25 (184)
304 4fcw_A Chaperone protein CLPB; 97.1 9.1E-05 3.1E-09 64.1 0.2 43 39-81 21-71 (311)
305 3b9p_A CG5977-PA, isoform A; A 97.1 0.0004 1.4E-08 59.8 4.2 30 57-86 54-83 (297)
306 3bh0_A DNAB-like replicative h 97.0 0.00056 1.9E-08 60.0 4.7 38 41-81 55-92 (315)
307 3eph_A TRNA isopentenyltransfe 97.0 0.00036 1.2E-08 63.4 3.5 34 57-90 2-35 (409)
308 1xjc_A MOBB protein homolog; s 97.0 0.00042 1.4E-08 55.5 3.4 24 58-81 5-28 (169)
309 3h4m_A Proteasome-activating n 97.0 0.00042 1.4E-08 59.2 3.6 31 57-87 51-81 (285)
310 3hr8_A Protein RECA; alpha and 97.0 0.00041 1.4E-08 62.1 3.5 29 50-81 57-85 (356)
311 1sxj_E Activator 1 40 kDa subu 96.9 0.00035 1.2E-08 61.5 2.8 24 58-81 37-60 (354)
312 3auy_A DNA double-strand break 96.9 0.0012 4.2E-08 59.0 6.3 32 43-78 15-46 (371)
313 3lxx_A GTPase IMAP family memb 96.9 0.00047 1.6E-08 57.5 3.2 24 58-81 30-53 (239)
314 2qz4_A Paraplegin; AAA+, SPG7, 96.9 0.00075 2.6E-08 56.6 4.4 30 57-86 39-68 (262)
315 1ko7_A HPR kinase/phosphatase; 96.9 0.00047 1.6E-08 60.6 3.0 48 38-90 129-176 (314)
316 3tqf_A HPR(Ser) kinase; transf 96.9 0.00095 3.3E-08 53.7 4.4 46 41-91 4-49 (181)
317 3bos_A Putative DNA replicatio 96.8 0.00069 2.3E-08 55.7 3.7 26 57-82 52-77 (242)
318 2dy1_A Elongation factor G; tr 96.8 0.00054 1.9E-08 66.2 3.1 33 48-83 3-35 (665)
319 1njg_A DNA polymerase III subu 96.8 0.0003 1E-08 57.4 1.0 41 39-82 27-70 (250)
320 1ypw_A Transitional endoplasmi 96.8 0.00037 1.3E-08 68.8 1.7 37 47-86 504-540 (806)
321 2r62_A Cell division protease 96.7 0.00034 1.2E-08 59.2 1.1 38 44-86 36-73 (268)
322 1mky_A Probable GTP-binding pr 96.7 0.0007 2.4E-08 62.1 3.2 24 58-81 181-204 (439)
323 1sxj_D Activator 1 41 kDa subu 96.7 0.00047 1.6E-08 60.5 1.9 42 38-82 40-83 (353)
324 3k53_A Ferrous iron transport 96.7 0.00083 2.8E-08 57.3 3.4 24 58-81 4-27 (271)
325 2qby_A CDC6 homolog 1, cell di 96.7 0.00089 3E-08 59.0 3.7 25 57-81 45-69 (386)
326 2xau_A PRE-mRNA-splicing facto 96.7 0.0013 4.5E-08 64.6 5.3 33 129-161 186-219 (773)
327 3t15_A Ribulose bisphosphate c 96.7 0.0011 3.6E-08 57.5 4.1 31 57-87 36-66 (293)
328 2w58_A DNAI, primosome compone 96.7 0.001 3.5E-08 53.8 3.6 24 58-81 55-78 (202)
329 2qtf_A Protein HFLX, GTP-bindi 96.7 0.00071 2.4E-08 60.7 2.8 23 59-81 181-203 (364)
330 2ocp_A DGK, deoxyguanosine kin 96.7 0.00096 3.3E-08 55.8 3.5 25 57-81 2-26 (241)
331 1jbk_A CLPB protein; beta barr 96.7 0.0011 3.8E-08 52.0 3.7 25 57-81 43-67 (195)
332 1g41_A Heat shock protein HSLU 96.7 0.001 3.6E-08 61.2 3.9 32 58-89 51-82 (444)
333 2zr9_A Protein RECA, recombina 96.7 0.00098 3.3E-08 59.4 3.6 29 50-81 57-85 (349)
334 3hws_A ATP-dependent CLP prote 96.7 0.001 3.5E-08 59.1 3.8 33 57-89 51-83 (363)
335 2ged_A SR-beta, signal recogni 96.7 0.001 3.5E-08 52.9 3.4 25 57-81 48-72 (193)
336 2r44_A Uncharacterized protein 96.6 0.00044 1.5E-08 60.5 1.1 44 39-85 31-74 (331)
337 1l8q_A Chromosomal replication 96.6 0.0011 3.9E-08 57.8 3.7 25 57-81 37-61 (324)
338 2ohf_A Protein OLA1, GTP-bindi 96.6 0.00081 2.8E-08 61.0 2.8 24 57-80 22-45 (396)
339 1z2a_A RAS-related protein RAB 96.6 0.0012 3.9E-08 51.0 3.3 22 59-80 7-28 (168)
340 3tmk_A Thymidylate kinase; pho 96.6 0.0013 4.4E-08 54.7 3.8 27 57-83 5-31 (216)
341 3kl4_A SRP54, signal recogniti 96.6 0.00094 3.2E-08 61.3 3.1 25 57-81 97-121 (433)
342 2orw_A Thymidine kinase; TMTK, 96.6 0.0012 4.2E-08 53.2 3.4 24 56-79 2-26 (184)
343 2dyk_A GTP-binding protein; GT 96.6 0.0013 4.3E-08 50.5 3.4 22 59-80 3-24 (161)
344 3ld9_A DTMP kinase, thymidylat 96.6 0.0013 4.6E-08 54.9 3.7 26 57-82 21-46 (223)
345 2ce2_X GTPase HRAS; signaling 96.6 0.0012 4.1E-08 50.5 3.2 22 59-80 5-26 (166)
346 4ag6_A VIRB4 ATPase, type IV s 96.6 0.0011 3.8E-08 59.6 3.4 25 57-81 35-59 (392)
347 1u8z_A RAS-related protein RAL 96.5 0.0014 4.7E-08 50.4 3.3 23 58-80 5-27 (168)
348 1fnn_A CDC6P, cell division co 96.5 0.0014 4.8E-08 58.0 3.7 25 57-81 42-68 (389)
349 2erx_A GTP-binding protein DI- 96.5 0.0014 4.7E-08 50.7 3.2 21 59-79 5-25 (172)
350 2nzj_A GTP-binding protein REM 96.5 0.0013 4.4E-08 51.2 3.1 22 59-80 6-27 (175)
351 1z0j_A RAB-22, RAS-related pro 96.5 0.0015 5E-08 50.5 3.4 23 59-81 8-30 (170)
352 4b4t_K 26S protease regulatory 96.5 0.0018 6.2E-08 59.3 4.4 32 57-88 206-237 (428)
353 1z08_A RAS-related protein RAB 96.5 0.0015 5.1E-08 50.5 3.3 22 59-80 8-29 (170)
354 4b4t_M 26S protease regulatory 96.5 0.0018 6.2E-08 59.4 4.3 32 57-88 215-246 (434)
355 1ek0_A Protein (GTP-binding pr 96.5 0.0015 5.2E-08 50.3 3.3 22 59-80 5-26 (170)
356 1ky3_A GTP-binding protein YPT 96.5 0.0015 5.3E-08 51.0 3.4 22 59-80 10-31 (182)
357 4b4t_L 26S protease subunit RP 96.5 0.0018 6.3E-08 59.4 4.3 32 57-88 215-246 (437)
358 3q85_A GTP-binding protein REM 96.5 0.0014 4.8E-08 50.7 3.0 23 59-81 4-26 (169)
359 1wms_A RAB-9, RAB9, RAS-relate 96.5 0.0016 5.5E-08 50.8 3.4 22 59-80 9-30 (177)
360 1g16_A RAS-related protein SEC 96.5 0.0015 5.2E-08 50.4 3.2 22 59-80 5-26 (170)
361 2p65_A Hypothetical protein PF 96.5 0.0014 4.7E-08 51.5 2.9 25 57-81 43-67 (187)
362 1c1y_A RAS-related protein RAP 96.5 0.0016 5.6E-08 50.1 3.3 22 59-80 5-26 (167)
363 3q72_A GTP-binding protein RAD 96.5 0.001 3.5E-08 51.3 2.1 21 59-79 4-24 (166)
364 3b1v_A Ferrous iron uptake tra 96.5 0.0014 4.7E-08 56.3 3.1 23 58-80 4-26 (272)
365 1kao_A RAP2A; GTP-binding prot 96.5 0.0017 5.7E-08 49.9 3.2 23 58-80 4-26 (167)
366 2lkc_A Translation initiation 96.4 0.0021 7.2E-08 50.1 3.8 24 57-80 8-31 (178)
367 1ofh_A ATP-dependent HSL prote 96.4 0.002 7E-08 55.2 4.0 30 57-86 50-79 (310)
368 2fn4_A P23, RAS-related protei 96.4 0.0017 5.8E-08 50.7 3.2 22 59-80 11-32 (181)
369 1d2n_A N-ethylmaleimide-sensit 96.4 0.0021 7.2E-08 54.6 4.0 31 57-87 64-94 (272)
370 3n70_A Transport activator; si 96.4 0.0021 7.1E-08 49.5 3.6 25 57-81 24-48 (145)
371 1fzq_A ADP-ribosylation factor 96.4 0.0011 3.8E-08 52.6 2.1 24 57-80 16-39 (181)
372 1um8_A ATP-dependent CLP prote 96.4 0.0019 6.4E-08 57.7 3.8 32 57-88 72-103 (376)
373 1svi_A GTP-binding protein YSX 96.4 0.0015 5.2E-08 51.9 2.9 24 57-80 23-46 (195)
374 3t1o_A Gliding protein MGLA; G 96.4 0.0019 6.4E-08 51.2 3.3 23 59-81 16-38 (198)
375 1r2q_A RAS-related protein RAB 96.4 0.0019 6.6E-08 49.7 3.3 21 59-79 8-28 (170)
376 3pqc_A Probable GTP-binding pr 96.4 0.0016 5.5E-08 51.6 2.9 24 58-81 24-47 (195)
377 3llm_A ATP-dependent RNA helic 96.4 0.0014 4.8E-08 54.6 2.5 26 50-78 72-97 (235)
378 3lxw_A GTPase IMAP family memb 96.4 0.0018 6.1E-08 54.6 3.2 24 58-81 22-45 (247)
379 3pvs_A Replication-associated 96.4 0.00072 2.5E-08 62.3 0.8 48 37-87 28-80 (447)
380 4b4t_J 26S protease regulatory 96.4 0.0021 7.1E-08 58.4 3.8 30 59-88 184-213 (405)
381 4dsu_A GTPase KRAS, isoform 2B 96.4 0.002 6.9E-08 50.7 3.4 22 59-80 6-27 (189)
382 3clv_A RAB5 protein, putative; 96.4 0.002 7E-08 51.1 3.4 22 59-80 9-30 (208)
383 3bc1_A RAS-related protein RAB 96.4 0.002 6.9E-08 50.8 3.3 22 59-80 13-34 (195)
384 1upt_A ARL1, ADP-ribosylation 96.4 0.0021 7E-08 49.8 3.3 23 57-79 7-29 (171)
385 2oil_A CATX-8, RAS-related pro 96.4 0.002 6.9E-08 51.3 3.3 22 59-80 27-48 (193)
386 2hxs_A RAB-26, RAS-related pro 96.4 0.0021 7.3E-08 50.1 3.4 22 59-80 8-29 (178)
387 2cxx_A Probable GTP-binding pr 96.3 0.0017 5.7E-08 51.3 2.7 22 59-80 3-24 (190)
388 3tw8_B RAS-related protein RAB 96.3 0.0015 5E-08 51.1 2.3 22 59-80 11-32 (181)
389 1r8s_A ADP-ribosylation factor 96.3 0.0022 7.7E-08 49.3 3.3 22 59-80 2-23 (164)
390 3eie_A Vacuolar protein sortin 96.3 0.0027 9.2E-08 55.5 4.2 31 57-87 51-81 (322)
391 2a9k_A RAS-related protein RAL 96.3 0.0022 7.7E-08 50.2 3.3 23 58-80 19-41 (187)
392 1z0f_A RAB14, member RAS oncog 96.3 0.0023 7.8E-08 49.8 3.3 22 59-80 17-38 (179)
393 2y8e_A RAB-protein 6, GH09086P 96.3 0.0022 7.4E-08 49.9 3.2 22 59-80 16-37 (179)
394 3con_A GTPase NRAS; structural 96.3 0.0023 7.7E-08 50.8 3.3 22 59-80 23-44 (190)
395 3d8b_A Fidgetin-like protein 1 96.3 0.0029 9.9E-08 56.3 4.3 30 57-86 117-146 (357)
396 3ihw_A Centg3; RAS, centaurin, 96.3 0.0024 8.2E-08 50.9 3.3 21 59-79 22-42 (184)
397 1xwi_A SKD1 protein; VPS4B, AA 96.3 0.0029 9.9E-08 55.5 4.1 30 57-86 45-75 (322)
398 2g6b_A RAS-related protein RAB 96.3 0.0024 8.3E-08 49.9 3.3 22 59-80 12-33 (180)
399 1nrj_B SR-beta, signal recogni 96.3 0.0023 8E-08 52.0 3.3 24 58-81 13-36 (218)
400 2bme_A RAB4A, RAS-related prot 96.2 0.0024 8.3E-08 50.2 3.2 22 59-80 12-33 (186)
401 2efe_B Small GTP-binding prote 96.2 0.0026 8.9E-08 49.7 3.3 22 59-80 14-35 (181)
402 1m7b_A RND3/RHOE small GTP-bin 96.2 0.0024 8.3E-08 50.5 3.2 22 59-80 9-30 (184)
403 1v5w_A DMC1, meiotic recombina 96.2 0.0028 9.4E-08 56.2 3.8 28 50-80 118-145 (343)
404 1moz_A ARL1, ADP-ribosylation 96.2 0.0012 3.9E-08 52.0 1.1 23 57-79 18-40 (183)
405 1vg8_A RAS-related protein RAB 96.2 0.0027 9.2E-08 51.0 3.4 23 59-81 10-32 (207)
406 2e87_A Hypothetical protein PH 96.2 0.0018 6E-08 57.7 2.3 25 57-81 167-191 (357)
407 4b4t_H 26S protease regulatory 96.2 0.003 1E-07 58.3 3.9 32 57-88 243-274 (467)
408 2wsm_A Hydrogenase expression/ 96.2 0.0026 8.9E-08 51.9 3.2 25 57-81 30-54 (221)
409 2ius_A DNA translocase FTSK; n 96.2 0.0027 9.3E-08 59.4 3.6 31 46-79 159-189 (512)
410 3kkq_A RAS-related protein M-R 96.2 0.0029 9.8E-08 49.8 3.3 22 59-80 20-41 (183)
411 3tkl_A RAS-related protein RAB 96.2 0.0029 9.8E-08 50.3 3.3 22 59-80 18-39 (196)
412 2fg5_A RAB-22B, RAS-related pr 96.2 0.0028 9.5E-08 50.6 3.2 22 59-80 25-46 (192)
413 2bov_A RAla, RAS-related prote 96.2 0.0029 9.8E-08 50.7 3.3 22 59-80 16-37 (206)
414 2gf9_A RAS-related protein RAB 96.2 0.0029 1E-07 50.2 3.3 22 59-80 24-45 (189)
415 2z4s_A Chromosomal replication 96.2 0.0024 8.2E-08 58.6 3.1 24 58-81 131-154 (440)
416 3pfi_A Holliday junction ATP-d 96.2 0.0032 1.1E-07 55.0 3.8 30 58-87 56-85 (338)
417 1mh1_A RAC1; GTP-binding, GTPa 96.2 0.0031 1E-07 49.5 3.3 21 59-79 7-27 (186)
418 2xtp_A GTPase IMAP family memb 96.2 0.0026 9E-08 53.5 3.1 24 58-81 23-46 (260)
419 2gf0_A GTP-binding protein DI- 96.2 0.0029 1E-07 50.3 3.2 22 58-79 9-30 (199)
420 2qp9_X Vacuolar protein sortin 96.1 0.0033 1.1E-07 55.9 3.8 31 57-87 84-114 (355)
421 3iby_A Ferrous iron transport 96.1 0.0027 9.1E-08 53.9 3.1 22 59-80 3-24 (256)
422 2cjw_A GTP-binding protein GEM 96.1 0.0031 1.1E-07 50.6 3.3 22 59-80 8-29 (192)
423 1wf3_A GTP-binding protein; GT 96.1 0.0028 9.6E-08 55.2 3.2 22 59-80 9-30 (301)
424 4b4t_I 26S protease regulatory 96.1 0.0041 1.4E-07 56.9 4.3 32 57-88 216-247 (437)
425 3t5g_A GTP-binding protein RHE 96.1 0.0031 1.1E-07 49.4 3.2 21 59-79 8-28 (181)
426 3dz8_A RAS-related protein RAB 96.1 0.0031 1.1E-07 50.2 3.2 23 59-81 25-47 (191)
427 3oes_A GTPase rhebl1; small GT 96.1 0.0031 1.1E-07 50.7 3.2 23 58-80 25-47 (201)
428 2dby_A GTP-binding protein; GD 96.1 0.0027 9.3E-08 57.0 3.1 23 59-81 3-25 (368)
429 1z06_A RAS-related protein RAB 96.1 0.0034 1.2E-07 49.8 3.4 22 59-80 22-43 (189)
430 3syl_A Protein CBBX; photosynt 96.1 0.0035 1.2E-07 54.0 3.7 25 57-81 67-91 (309)
431 1jal_A YCHF protein; nucleotid 96.1 0.0035 1.2E-07 56.2 3.6 23 57-79 2-24 (363)
432 1ksh_A ARF-like protein 2; sma 96.1 0.0028 9.5E-08 50.0 2.7 24 57-80 18-41 (186)
433 2a5j_A RAS-related protein RAB 96.1 0.0036 1.2E-07 49.8 3.3 22 59-80 23-44 (191)
434 1zd9_A ADP-ribosylation factor 96.1 0.0036 1.2E-07 49.8 3.3 22 59-80 24-45 (188)
435 3cbq_A GTP-binding protein REM 96.1 0.002 6.7E-08 51.9 1.7 23 59-81 25-47 (195)
436 3bwd_D RAC-like GTP-binding pr 96.1 0.0037 1.3E-07 48.9 3.3 23 58-80 9-31 (182)
437 2ew1_A RAS-related protein RAB 96.1 0.0034 1.2E-07 50.9 3.2 22 59-80 28-49 (201)
438 1zbd_A Rabphilin-3A; G protein 96.1 0.0034 1.2E-07 50.3 3.2 22 59-80 10-31 (203)
439 2atv_A RERG, RAS-like estrogen 96.0 0.0037 1.3E-07 49.9 3.4 23 58-80 29-51 (196)
440 1x3s_A RAS-related protein RAB 96.0 0.0037 1.3E-07 49.5 3.3 22 59-80 17-38 (195)
441 3reg_A RHO-like small GTPase; 96.0 0.0037 1.3E-07 49.8 3.3 22 59-80 25-46 (194)
442 2qen_A Walker-type ATPase; unk 96.0 0.0014 4.9E-08 57.0 0.9 49 38-89 15-63 (350)
443 2bcg_Y Protein YP2, GTP-bindin 96.0 0.0035 1.2E-07 50.4 3.2 22 59-80 10-31 (206)
444 3iev_A GTP-binding protein ERA 96.0 0.0033 1.1E-07 54.8 3.2 23 58-80 11-33 (308)
445 2p5s_A RAS and EF-hand domain 96.0 0.0038 1.3E-07 50.1 3.3 24 57-80 28-51 (199)
446 2iwr_A Centaurin gamma 1; ANK 96.0 0.0029 1E-07 49.5 2.6 22 59-80 9-30 (178)
447 1zj6_A ADP-ribosylation factor 96.0 0.0035 1.2E-07 49.6 3.1 23 57-79 16-38 (187)
448 2v1u_A Cell division control p 96.0 0.0031 1.1E-07 55.5 3.0 25 57-81 44-68 (387)
449 3a1s_A Iron(II) transport prot 96.0 0.0037 1.2E-07 53.1 3.2 22 59-80 7-28 (258)
450 1gwn_A RHO-related GTP-binding 96.0 0.0038 1.3E-07 50.7 3.2 22 59-80 30-51 (205)
451 4dhe_A Probable GTP-binding pr 96.0 0.0021 7.2E-08 52.4 1.6 24 57-80 29-52 (223)
452 2z43_A DNA repair and recombin 96.0 0.004 1.4E-07 54.6 3.5 28 50-80 103-130 (324)
453 2o52_A RAS-related protein RAB 96.0 0.0036 1.2E-07 50.4 2.9 21 59-79 27-47 (200)
454 3c5c_A RAS-like protein 12; GD 96.0 0.0043 1.5E-07 49.3 3.4 22 59-80 23-44 (187)
455 2h17_A ADP-ribosylation factor 96.0 0.0033 1.1E-07 49.6 2.6 23 58-80 22-44 (181)
456 3cph_A RAS-related protein SEC 96.0 0.0042 1.4E-07 50.0 3.3 24 57-80 20-43 (213)
457 1sky_E F1-ATPase, F1-ATP synth 95.9 0.0033 1.1E-07 58.1 2.9 36 42-81 140-175 (473)
458 2fv8_A H6, RHO-related GTP-bin 95.9 0.0042 1.4E-07 50.2 3.2 23 58-80 26-48 (207)
459 2hf9_A Probable hydrogenase ni 95.9 0.0043 1.5E-07 50.8 3.2 25 57-81 38-62 (226)
460 2fh5_B SR-beta, signal recogni 95.9 0.0046 1.6E-07 50.1 3.3 23 58-80 8-30 (214)
461 3vfd_A Spastin; ATPase, microt 95.9 0.0057 2E-07 54.9 4.2 31 57-87 148-178 (389)
462 2chg_A Replication factor C sm 95.9 0.0043 1.5E-07 49.8 3.1 23 59-81 40-62 (226)
463 3uk6_A RUVB-like 2; hexameric 95.9 0.0047 1.6E-07 54.5 3.6 27 57-83 70-96 (368)
464 2f7s_A C25KG, RAS-related prot 95.9 0.0043 1.5E-07 50.3 3.1 22 59-80 27-48 (217)
465 2il1_A RAB12; G-protein, GDP, 95.9 0.0033 1.1E-07 50.2 2.3 21 59-79 28-48 (192)
466 2h57_A ADP-ribosylation factor 95.9 0.0027 9.2E-08 50.4 1.7 24 58-81 22-45 (190)
467 2q3h_A RAS homolog gene family 95.9 0.0045 1.5E-07 49.5 3.0 24 57-80 20-43 (201)
468 4bas_A ADP-ribosylation factor 95.9 0.0035 1.2E-07 49.9 2.4 23 58-80 18-40 (199)
469 2gco_A H9, RHO-related GTP-bin 95.8 0.0049 1.7E-07 49.6 3.2 22 59-80 27-48 (201)
470 1jwy_B Dynamin A GTPase domain 95.8 0.0044 1.5E-07 53.6 3.1 24 58-81 25-48 (315)
471 3t5d_A Septin-7; GTP-binding p 95.8 0.0034 1.2E-07 53.6 2.3 22 59-80 10-31 (274)
472 3llu_A RAS-related GTP-binding 95.8 0.0045 1.5E-07 49.6 2.9 23 58-80 21-43 (196)
473 2qu8_A Putative nucleolar GTP- 95.8 0.004 1.4E-07 51.3 2.7 24 57-80 29-52 (228)
474 2fu5_C RAS-related protein RAB 95.8 0.0031 1.1E-07 49.6 1.8 21 59-79 10-30 (183)
475 2j1l_A RHO-related GTP-binding 95.8 0.0046 1.6E-07 50.3 3.0 21 59-79 36-56 (214)
476 3i8s_A Ferrous iron transport 95.8 0.0055 1.9E-07 52.4 3.5 24 58-81 4-27 (274)
477 2atx_A Small GTP binding prote 95.8 0.0054 1.8E-07 48.8 3.2 22 59-80 20-41 (194)
478 2qby_B CDC6 homolog 3, cell di 95.7 0.0075 2.6E-07 53.3 4.2 25 57-81 45-69 (384)
479 1knx_A Probable HPR(Ser) kinas 95.7 0.0048 1.7E-07 54.1 2.8 52 35-91 129-180 (312)
480 3nbx_X ATPase RAVA; AAA+ ATPas 95.7 0.0019 6.5E-08 60.3 0.2 41 39-82 26-66 (500)
481 2hup_A RAS-related protein RAB 95.7 0.0061 2.1E-07 49.1 3.2 21 59-79 31-51 (201)
482 1sxj_A Activator 1 95 kDa subu 95.7 0.0078 2.7E-07 56.2 4.3 30 57-86 77-106 (516)
483 2c9o_A RUVB-like 1; hexameric 95.7 0.0081 2.8E-07 55.2 4.4 26 57-82 63-88 (456)
484 1hqc_A RUVB; extended AAA-ATPa 95.7 0.0046 1.6E-07 53.5 2.6 30 57-86 38-67 (324)
485 2g3y_A GTP-binding protein GEM 95.7 0.006 2E-07 50.2 3.1 22 59-80 39-60 (211)
486 4gzl_A RAS-related C3 botulinu 95.6 0.0064 2.2E-07 49.1 3.2 23 57-79 30-52 (204)
487 2zan_A Vacuolar protein sortin 95.6 0.0078 2.7E-07 55.2 4.1 30 57-86 167-197 (444)
488 2qgz_A Helicase loader, putati 95.6 0.0074 2.5E-07 52.6 3.7 25 57-81 152-176 (308)
489 3cf2_A TER ATPase, transitiona 95.6 0.0078 2.7E-07 59.3 4.2 31 57-87 238-268 (806)
490 2aka_B Dynamin-1; fusion prote 95.6 0.0057 1.9E-07 52.3 2.8 24 58-81 27-50 (299)
491 3dm5_A SRP54, signal recogniti 95.6 0.007 2.4E-07 55.6 3.6 25 57-81 100-124 (443)
492 3cpj_B GTP-binding protein YPT 95.6 0.0073 2.5E-07 49.4 3.4 22 59-80 15-36 (223)
493 3def_A T7I23.11 protein; chlor 95.6 0.0065 2.2E-07 51.4 3.1 24 58-81 37-60 (262)
494 3p32_A Probable GTPase RV1496/ 95.6 0.007 2.4E-07 53.8 3.4 25 57-81 79-103 (355)
495 1h65_A Chloroplast outer envel 95.6 0.0066 2.3E-07 51.6 3.1 22 59-80 41-62 (270)
496 2b6h_A ADP-ribosylation factor 95.5 0.0066 2.3E-07 48.5 2.9 23 57-79 29-51 (192)
497 3cnl_A YLQF, putative uncharac 95.5 0.0068 2.3E-07 51.7 3.1 24 58-81 100-123 (262)
498 3q3j_B RHO-related GTP-binding 95.5 0.0077 2.6E-07 49.1 3.3 23 58-80 28-50 (214)
499 2i1q_A DNA repair and recombin 95.5 0.0075 2.6E-07 52.6 3.3 27 50-79 94-120 (322)
500 3e2i_A Thymidine kinase; Zn-bi 95.5 0.0085 2.9E-07 49.8 3.5 25 57-81 28-53 (219)
No 1
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=9.5e-36 Score=259.44 Aligned_cols=193 Identities=19% Similarity=0.251 Sum_probs=157.2
Q ss_pred CcceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-------
Q 025114 25 SASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------- 93 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------- 93 (257)
.+++|+++||++.|+++++|++|||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++..
T Consensus 8 ~~~~l~~~~l~~~~~~~~vL~~vsl~i~~---Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~ 84 (266)
T 4g1u_C 8 PVALLEASHLHYHVQQQALINDVSLHIAS---GEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALA 84 (266)
T ss_dssp CCCEEEEEEEEEEETTEEEEEEEEEEEET---TCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHH
T ss_pred CcceEEEEeEEEEeCCeeEEEeeEEEEcC---CCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHh
Confidence 34689999999999999999999999999 9999999999999999999999998 456666654311
Q ss_pred ----------hcCCCCCHHHHHHHhC----chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-------
Q 025114 94 ----------QSVDGTSVAEIFKLYG----EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ------- 149 (257)
Q Consensus 94 ----------~~~~~~~v~e~~~~~g----~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~------- 149 (257)
......|+.+++.... ....+++..++++.+++.+ +.+.+|||||+||+.+|+++.
T Consensus 85 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~ 164 (266)
T 4g1u_C 85 RTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQP 164 (266)
T ss_dssp HHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSC
T ss_pred heEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCC
Confidence 0113568888876532 1223455678899988754 789999999999999997774
Q ss_pred CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecchhh
Q 025114 150 KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENI 217 (257)
Q Consensus 150 ~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~~l 217 (257)
+|++++|||||++| ++++++. +.++++++||++.+..+| |++..|.+|++...|+++++++.+.+
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~---d~v~vl~~G~i~~~g~~~~~~~~~~l 241 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYA---DRIMLLAQGKLVACGTPEEVLNAETL 241 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHC---SEEEEEETTEEEEEECHHHHCCHHHH
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhC---CEEEEEECCEEEEEcCHHHHhCcHHH
Confidence 89999999999988 4566544 468999999988888888 88888889998888888888887888
Q ss_pred hhhccc
Q 025114 218 AVKLGH 223 (257)
Q Consensus 218 ~~~~~~ 223 (257)
.+.|+.
T Consensus 242 ~~~~~~ 247 (266)
T 4g1u_C 242 TQWYQA 247 (266)
T ss_dssp HHHCCS
T ss_pred HHHhCC
Confidence 888874
No 2
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3.1e-35 Score=257.27 Aligned_cols=191 Identities=18% Similarity=0.208 Sum_probs=150.3
Q ss_pred cceEEecceeeeeCc-cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhh---------
Q 025114 26 ASVLESGNVHAPIDE-AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTL--------- 91 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~-~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~--------- 91 (257)
+++|+++||++.|++ ..+|+||||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++
T Consensus 5 ~~~l~i~~ls~~y~~~~~~L~~isl~i~~---Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~ 81 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGTHALKGINMNIKR---GEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMK 81 (275)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEEEEEEET---TSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHH
T ss_pred CcEEEEEEEEEEECCCCeEEEeeEEEEcC---CCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHH
Confidence 358999999999975 4599999999999 9999999999999999999999998 3456665432
Q ss_pred -------hhh----cCCCCCHHHHHHHhC------chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-C
Q 025114 92 -------IEQ----SVDGTSVAEIFKLYG------EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-K 150 (257)
Q Consensus 92 -------~~~----~~~~~~v~e~~~~~g------~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~ 150 (257)
+.+ .+...|+.+.+.... ....+++..++++.+++.+ +.+..|||||+||+++|+++. +
T Consensus 82 ~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~ 161 (275)
T 3gfo_A 82 LRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVME 161 (275)
T ss_dssp HHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTC
T ss_pred HhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 001 123568888765421 1223455678899998864 889999999999999998886 7
Q ss_pred CcEEEEECCHHHH-----------HHHHH-hcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecchhhh
Q 025114 151 GISVWLDVPLEAL-----------AQRIA-AVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIA 218 (257)
Q Consensus 151 ~~vl~LDep~~~L-----------~~rl~-~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~~l~ 218 (257)
|++++|||||++| +++++ +.|.++++++||++.+..+| |++..|.+|++...|+++++++...+.
T Consensus 162 P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~---drv~~l~~G~i~~~g~~~~~~~~~~~~ 238 (275)
T 3gfo_A 162 PKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYC---DNVFVMKEGRVILQGNPKEVFAEKEVI 238 (275)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGC---SEEEEEETTEEEEEECHHHHTHHHHHH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhC---CEEEEEECCEEEEECCHHHHhcCHHHH
Confidence 9999999999998 46665 45899999999999998888 898888888888777777766554444
Q ss_pred hhcc
Q 025114 219 VKLG 222 (257)
Q Consensus 219 ~~~~ 222 (257)
..|+
T Consensus 239 ~~~~ 242 (275)
T 3gfo_A 239 RKVN 242 (275)
T ss_dssp HHHH
T ss_pred HHcC
Confidence 4443
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=4.7e-35 Score=265.88 Aligned_cols=181 Identities=22% Similarity=0.250 Sum_probs=145.7
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh--------
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE-------- 93 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~-------- 93 (257)
|++|+++||+|.|+++.+|+||||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++..
T Consensus 1 M~~l~~~~l~~~yg~~~~L~~vsl~i~~---Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~i 77 (381)
T 3rlf_A 1 MASVQLQNVTKAWGEVVVSKDINLDIHE---GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV 77 (381)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEEEEECT---TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCE
T ss_pred CCEEEEEeEEEEECCEEEEeeeEEEECC---CCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCE
Confidence 3569999999999999999999999999 9999999999999999999999998 445666654321
Q ss_pred ----h---cCCCCCHHHHHHHh----C--chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEE
Q 025114 94 ----Q---SVDGTSVAEIFKLY----G--EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWL 156 (257)
Q Consensus 94 ----~---~~~~~~v~e~~~~~----g--~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~L 156 (257)
+ .++.+|+.+++.+. + ....+++..++++.+++.+ +++.+|||||+||+++|++|. +|++++|
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLL 157 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLL 157 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 1 12467898887542 1 1223456678899998864 899999999999999998886 8999999
Q ss_pred ECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 157 DVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 157 Dep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
|||+++| ++++.+. |.+++.++||++++..+| |++..|.+|++...|+++++.
T Consensus 158 DEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~a---Dri~vl~~G~i~~~g~~~~l~ 222 (381)
T 3rlf_A 158 DEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLA---DKIVVLDAGRVAQVGKPLELY 222 (381)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHC---SEEEEEETTEEEEEECHHHHH
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhC---CEEEEEECCEEEEEeCHHHHH
Confidence 9999998 4666544 899999999988888887 888888888776666655543
No 4
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2e-34 Score=249.96 Aligned_cols=179 Identities=20% Similarity=0.265 Sum_probs=139.4
Q ss_pred CcceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh--------
Q 025114 25 SASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI-------- 92 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~-------- 92 (257)
.+++|+++||++.|+++++|+|+||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 4 ~~~~l~i~~l~~~y~~~~vl~~vsl~i~~---Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (257)
T 1g6h_A 4 TMEILRTENIVKYFGEFKALDGVSISVNK---GDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY 80 (257)
T ss_dssp CCEEEEEEEEEEEETTEEEEEEECCEEET---TCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHH
T ss_pred CCcEEEEeeeEEEECCEeeEeeeEEEEeC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 35689999999999998999999999999 9999999999999999999999998 34455553321
Q ss_pred h-------h---cCCCCCHHHHHHHhCc-------------------hHHHHHHHHHHHHhcccC---ccccccChhHhH
Q 025114 93 E-------Q---SVDGTSVAEIFKLYGE-------------------GFFREKETEVLQKLSLMR---QLVVSTGGGAVT 140 (257)
Q Consensus 93 ~-------~---~~~~~~v~e~~~~~g~-------------------~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~q 140 (257)
. + .+...|+.+++..... ...+++..++++.+++.+ +.+..|||||+|
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQ 160 (257)
T 1g6h_A 81 HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMK 160 (257)
T ss_dssp HHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHH
T ss_pred hCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHH
Confidence 0 0 1124688888765211 112334567888888754 789999999999
Q ss_pred HHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcc
Q 025114 141 RPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANA 208 (257)
Q Consensus 141 r~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~ 208 (257)
|+.+|+++. +|++++|||||++| ++++++.|.+++.++||++.+..+| |++..|.+|++...+++
T Consensus 161 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~---d~v~~l~~G~i~~~g~~ 237 (257)
T 1g6h_A 161 LVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYI---DHLYVMFNGQIIAEGRG 237 (257)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGC---SEEEEEETTEEEEEEES
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhC---CEEEEEECCEEEEEeCH
Confidence 999998876 79999999999998 4556555889999999999888888 88877766665444444
Q ss_pred c
Q 025114 209 N 209 (257)
Q Consensus 209 ~ 209 (257)
+
T Consensus 238 ~ 238 (257)
T 1g6h_A 238 E 238 (257)
T ss_dssp H
T ss_pred H
Confidence 3
No 5
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=9.8e-35 Score=262.06 Aligned_cols=180 Identities=21% Similarity=0.266 Sum_probs=145.3
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh----------
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI---------- 92 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~---------- 92 (257)
++|+++||+|.|+++.+|+||||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 3 ~~l~i~~ls~~y~~~~~L~~vsl~i~~---Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~ 79 (359)
T 3fvq_A 3 AALHIGHLSKSFQNTPVLNDISLSLDP---GEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79 (359)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECT---TCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGG
T ss_pred cEEEEEeEEEEECCEEEEEeeEEEEcC---CCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhh
Confidence 379999999999999999999999999 9999999999999999999999998 44566654431
Q ss_pred ------hh---cCCCCCHHHHHHHhC------chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcE
Q 025114 93 ------EQ---SVDGTSVAEIFKLYG------EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGIS 153 (257)
Q Consensus 93 ------~~---~~~~~~v~e~~~~~g------~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~v 153 (257)
.+ .+..+|+.+++.+.- ....+++..++++.+++.+ +++.+|||||+||+++|++|. +|++
T Consensus 80 r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~l 159 (359)
T 3fvq_A 80 RRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPEL 159 (359)
T ss_dssp SCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred CCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 01 124678999887632 1233456678899998864 899999999999999998886 7999
Q ss_pred EEEECCHHHH-----------HHHH-HhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 154 VWLDVPLEAL-----------AQRI-AAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 154 l~LDep~~~L-----------~~rl-~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
++||||+++| +.++ ++.|.+++.++||++++..+| |++..|.+|++...|++++++
T Consensus 160 LLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~a---Dri~vl~~G~i~~~g~~~el~ 227 (359)
T 3fvq_A 160 ILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYA---DRIAVMKQGRILQTASPHELY 227 (359)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHC---SEEEEEETTEEEEEECHHHHH
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHC---CEEEEEECCEEEEEeCHHHHH
Confidence 9999999998 2333 235899999999988888887 888888888877767665554
No 6
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.98 E-value=3e-34 Score=259.20 Aligned_cols=183 Identities=17% Similarity=0.174 Sum_probs=146.1
Q ss_pred CcceEEecceeeeeCc----cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh----
Q 025114 25 SASVLESGNVHAPIDE----AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI---- 92 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~----~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~---- 92 (257)
++++|+++||+|.|++ ..+|+||||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~---Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~ 97 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPA---GQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSE 97 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECT---TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcC---CCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCH
Confidence 4568999999999963 4699999999999 9999999999999999999999998 44566664331
Q ss_pred -------------hh---cCCCCCHHHHHHHh----C--chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHH
Q 025114 93 -------------EQ---SVDGTSVAEIFKLY----G--EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRY 147 (257)
Q Consensus 93 -------------~~---~~~~~~v~e~~~~~----g--~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~ 147 (257)
.+ .+..+|+.+++... + ....+++..++|+.+++.+ +++.+|||||+||+.+|++
T Consensus 98 ~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArA 177 (366)
T 3tui_C 98 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARA 177 (366)
T ss_dssp HHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 01 12356888877542 1 1223455678899999864 7899999999999999998
Q ss_pred hh-CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceec
Q 025114 148 MQ-KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVS 213 (257)
Q Consensus 148 l~-~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~ 213 (257)
|. +|++++|||||++| ++++++. |.++++++||++.+..+| |++..|.+|++...|+++++++
T Consensus 178 L~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~a---Drv~vl~~G~iv~~g~~~ev~~ 253 (366)
T 3tui_C 178 LASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRIC---DCVAVISNGELIEQDTVSEVFS 253 (366)
T ss_dssp TTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHC---SEEEEEETTEEEECCBHHHHHS
T ss_pred HhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhC---CEEEEEECCEEEEEcCHHHHHh
Confidence 87 79999999999998 5666544 899999999998888888 8888888888877777766553
No 7
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.97 E-value=2.6e-34 Score=246.81 Aligned_cols=176 Identities=18% Similarity=0.170 Sum_probs=133.2
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh--------h
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI--------E 93 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~--------~ 93 (257)
.++|+++||++.|+++++|+++||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++. .
T Consensus 4 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 80 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGAIHAIKGIDLKVPR---GQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80 (240)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEET---TCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred CceEEEEeEEEEECCeeEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHh
Confidence 4589999999999998999999999999 9999999999999999999999998 33455553321 1
Q ss_pred h----------cCCCCCHHHHHHHhC-----chHHHHHHHHHHHHhc-cc---CccccccChhHhHHHHHHHHhh-CCcE
Q 025114 94 Q----------SVDGTSVAEIFKLYG-----EGFFREKETEVLQKLS-LM---RQLVVSTGGGAVTRPINWRYMQ-KGIS 153 (257)
Q Consensus 94 ~----------~~~~~~v~e~~~~~g-----~~~~~~~~~~~l~~l~-~~---~~~v~~lsgG~~qr~~~a~~l~-~~~v 153 (257)
. .+.+.|+.+++.... .....+...++++.++ +. ++.+..|||||+||+.+|+++. +|++
T Consensus 81 ~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~l 160 (240)
T 1ji0_A 81 MGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKL 160 (240)
T ss_dssp TTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSE
T ss_pred CCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 1 123568888876532 1122344556778774 64 3789999999999999998886 7999
Q ss_pred EEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhc
Q 025114 154 VWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN 207 (257)
Q Consensus 154 l~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~ 207 (257)
++|||||++| ++++++.|.+++.++||++.+..+| |++..|.+|++...++
T Consensus 161 llLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~---d~v~~l~~G~i~~~g~ 222 (240)
T 1ji0_A 161 LMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVA---HYGYVLETGQIVLEGK 222 (240)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHC---SEEEEEETTEEEEEEE
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhC---CEEEEEECCEEEEEcC
Confidence 9999999998 4555546889999999976655565 6665555555433333
No 8
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.97 E-value=8.7e-34 Score=248.60 Aligned_cols=191 Identities=18% Similarity=0.150 Sum_probs=144.3
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh---------
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI--------- 92 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~--------- 92 (257)
.++|+++||++.|+++++|+|+||+|++ |++++|+||||||||||+|+|+|++ |.+.+++.++.
T Consensus 19 ~~~l~~~~l~~~y~~~~vL~~isl~i~~---Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~ 95 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQGKTILKKISWQIAK---GDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETV 95 (279)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEET---TCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHH
T ss_pred CceEEEEeEEEEECCEEEEEeeeEEEcC---CCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHH
Confidence 4579999999999998999999999999 9999999999999999999999998 33455543211
Q ss_pred -------hhc----C-CCCCHHHHHHHhCc----------hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHH
Q 025114 93 -------EQS----V-DGTSVAEIFKLYGE----------GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRY 147 (257)
Q Consensus 93 -------~~~----~-~~~~v~e~~~~~g~----------~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~ 147 (257)
.+. + ...|+.+++..... ....++..++++.+++.+ +.+..|||||+||+.+|++
T Consensus 96 ~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAra 175 (279)
T 2ihy_A 96 RQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARA 175 (279)
T ss_dssp HTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred cCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 010 1 13488888764211 112234567888888754 7899999999999999988
Q ss_pred hh-CCcEEEEECCHHHH-----------HHHHHhcCCCC--ccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceec
Q 025114 148 MQ-KGISVWLDVPLEAL-----------AQRIAAVGTDS--RPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVS 213 (257)
Q Consensus 148 l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~--~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~ 213 (257)
+. +|++++|||||++| +++++..|.++ +.++||++.+..+| |++..|.+|++...+++++++.
T Consensus 176 L~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~---d~v~~l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 176 LMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANF---SKILLLKDGQSIQQGAVEDILT 252 (279)
T ss_dssp HHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTC---CEEEEEETTEEEEEEEHHHHCS
T ss_pred HhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhC---CEEEEEECCEEEEECCHHHHhc
Confidence 86 79999999999998 45555458899 99999998888888 8887777777655555555444
Q ss_pred chhhhhhcc
Q 025114 214 LENIAVKLG 222 (257)
Q Consensus 214 ~~~l~~~~~ 222 (257)
.+.+...|+
T Consensus 253 ~~~~~~~~~ 261 (279)
T 2ihy_A 253 SENMSRFFQ 261 (279)
T ss_dssp HHHHHHHHT
T ss_pred cHHHHHHhC
Confidence 333444443
No 9
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.97 E-value=4.3e-34 Score=247.67 Aligned_cols=180 Identities=17% Similarity=0.166 Sum_probs=137.4
Q ss_pred CCcceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC----Cceecchhhh-------
Q 025114 24 LSASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG----YSFFDCDTLI------- 92 (257)
Q Consensus 24 ~~~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg----~~~~d~~~~~------- 92 (257)
..|++|+++||++.|+++++|+++||+|++ |++++|+||||||||||+|+|+|++. .+++++.++.
T Consensus 11 ~~~~~l~i~~l~~~y~~~~vl~~vsl~i~~---Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~ 87 (256)
T 1vpl_A 11 HHMGAVVVKDLRKRIGKKEILKGISFEIEE---GEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVR 87 (256)
T ss_dssp ---CCEEEEEEEEEETTEEEEEEEEEEECT---TCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHH
T ss_pred ccCCeEEEEEEEEEECCEEEEEeeEEEEcC---CcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHh
Confidence 358899999999999998999999999999 99999999999999999999999983 4555553321
Q ss_pred ------hh---cCCCCCHHHHHHHh----Cc--hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcE
Q 025114 93 ------EQ---SVDGTSVAEIFKLY----GE--GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGIS 153 (257)
Q Consensus 93 ------~~---~~~~~~v~e~~~~~----g~--~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~v 153 (257)
.+ .+..+|+.+++... +. ...+++..++++.+++.+ +++..|||||+||+.+|+++. +|++
T Consensus 88 ~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~l 167 (256)
T 1vpl_A 88 KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRL 167 (256)
T ss_dssp TTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSE
T ss_pred hcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 01 12356888877552 11 111234567888888854 789999999999999998876 7999
Q ss_pred EEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccc
Q 025114 154 VWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN 209 (257)
Q Consensus 154 l~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~ 209 (257)
++||||+++| ++++++.|.++++++||++.+..+| |++..|.+|++...++++
T Consensus 168 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~---d~v~~l~~G~i~~~g~~~ 231 (256)
T 1vpl_A 168 AILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLC---DRIALIHNGTIVETGTVE 231 (256)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTC---SEEEEEETTEEEEEEEHH
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHC---CEEEEEECCEEEEecCHH
Confidence 9999999998 4555555889999999987777777 777666666654444433
No 10
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.97 E-value=6.1e-34 Score=247.59 Aligned_cols=176 Identities=20% Similarity=0.169 Sum_probs=134.6
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC----Cceecchhhh----------
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG----YSFFDCDTLI---------- 92 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg----~~~~d~~~~~---------- 92 (257)
++|+++||++.|+++++|+||||+|++ |++++|+||||||||||+|+|+|++. .+++++.++.
T Consensus 23 ~~l~i~~l~~~y~~~~vL~~vsl~i~~---Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 99 (263)
T 2olj_A 23 QMIDVHQLKKSFGSLEVLKGINVHIRE---GEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVR 99 (263)
T ss_dssp CSEEEEEEEEEETTEEEEEEEEEEECT---TCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHH
T ss_pred heEEEEeEEEEECCEEEEEeeEEEEcC---CCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHh
Confidence 479999999999988999999999999 99999999999999999999999983 4555553320
Q ss_pred ------hh---cCCCCCHHHHHHHh-----Cc--hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCc
Q 025114 93 ------EQ---SVDGTSVAEIFKLY-----GE--GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGI 152 (257)
Q Consensus 93 ------~~---~~~~~~v~e~~~~~-----g~--~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~ 152 (257)
.+ .+..+|+.+.+... +. ....++..++++.+++.+ +.+.+|||||+||+.+|+++. +|+
T Consensus 100 ~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~ 179 (263)
T 2olj_A 100 EEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPK 179 (263)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred CcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCC
Confidence 01 12356888877552 11 112344567889988854 789999999999999998876 799
Q ss_pred EEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcc
Q 025114 153 SVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANA 208 (257)
Q Consensus 153 vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~ 208 (257)
+++|||||++| ++++++.|.+++.++||++.+..+| |++..|.+|++...+++
T Consensus 180 lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~---d~v~~l~~G~i~~~g~~ 243 (263)
T 2olj_A 180 IMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVG---DRVLFMDGGYIIEEGKP 243 (263)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHC---SEEEEEETTEEEEEECH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhC---CEEEEEECCEEEEECCH
Confidence 99999999998 4555555889999999977666666 66655655554433333
No 11
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.97 E-value=9e-34 Score=256.43 Aligned_cols=180 Identities=21% Similarity=0.237 Sum_probs=142.3
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh----------
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI---------- 92 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~---------- 92 (257)
.+|+++||+|.|+++++|+++||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 2 ~~l~~~~l~~~y~~~~vl~~vsl~i~~---Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 78 (362)
T 2it1_A 2 VEIKLENIVKKFGNFTALNNINLKIKD---GEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVG 78 (362)
T ss_dssp CCEEEEEEEEESSSSEEEEEEEEEECT---TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEE
T ss_pred cEEEEEeEEEEECCEEEEEeeEEEECC---CCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEE
Confidence 469999999999998999999999999 9999999999999999999999998 34566554321
Q ss_pred --hh---cCCCCCHHHHHHHh----C--chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEE
Q 025114 93 --EQ---SVDGTSVAEIFKLY----G--EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLD 157 (257)
Q Consensus 93 --~~---~~~~~~v~e~~~~~----g--~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LD 157 (257)
.+ .+..+|+.+++... + ....+++..++++.+++.+ +.+.+|||||+||+++|+++. +|++++||
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD 158 (362)
T 2it1_A 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLD 158 (362)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 11 12457898887652 1 1122345678899998864 889999999999999998886 79999999
Q ss_pred CCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 158 VPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 158 ep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
||+++| ++++.+. |.+++.++||++++..+| |++..|.+|++...|++++++
T Consensus 159 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~a---dri~vl~~G~i~~~g~~~~~~ 222 (362)
T 2it1_A 159 EPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMA---DRIAVIREGEILQVGTPDEVY 222 (362)
T ss_dssp SGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHC---SEEEEEETTEEEEEECHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhC---CEEEEEECCEEEEEcCHHHHH
Confidence 999998 4555443 889999999987777777 777777777766656655544
No 12
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.97 E-value=1.2e-33 Score=240.40 Aligned_cols=167 Identities=23% Similarity=0.268 Sum_probs=127.3
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC----Cceecchhhh---------
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG----YSFFDCDTLI--------- 92 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg----~~~~d~~~~~--------- 92 (257)
+++|+++|+++.|+++++|+|+||+|++ |++++|+||||||||||+|+|+|++. .+++++.++.
T Consensus 2 ~~~l~~~~l~~~y~~~~~l~~vsl~i~~---Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 78 (224)
T 2pcj_A 2 AEILRAENIKKVIRGYEILKGISLSVKK---GEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78 (224)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEET---TCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHH
T ss_pred CcEEEEEeEEEEECCEeeEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHH
Confidence 3579999999999988999999999999 99999999999999999999999983 3455543220
Q ss_pred -h-h----------cCCCCCHHHHHHHh----Cc--hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-C
Q 025114 93 -E-Q----------SVDGTSVAEIFKLY----GE--GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-K 150 (257)
Q Consensus 93 -~-~----------~~~~~~v~e~~~~~----g~--~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~ 150 (257)
. . .+...|+.+++... +. ...+++..++++.+++.+ +.+.+|||||+||+.+|+++. +
T Consensus 79 ~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~ 158 (224)
T 2pcj_A 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANE 158 (224)
T ss_dssp HHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTC
T ss_pred HHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 0 1 12346888876542 11 122344567889998854 789999999999999998886 7
Q ss_pred CcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHH
Q 025114 151 GISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWE 199 (257)
Q Consensus 151 ~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~ 199 (257)
|++++||||+++| ++++++.|.+++.++||++.+ .+| |++..|.+
T Consensus 159 p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~---d~v~~l~~ 214 (224)
T 2pcj_A 159 PILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELT---HRTLEMKD 214 (224)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTS---SEEEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhC---CEEEEEEC
Confidence 9999999999998 455554588999999996543 444 55433333
No 13
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.97 E-value=1.1e-33 Score=257.05 Aligned_cols=180 Identities=18% Similarity=0.216 Sum_probs=141.8
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh---------
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE--------- 93 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~--------- 93 (257)
.+|+++||+|.|+++++|+|+||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++..
T Consensus 2 ~~l~~~~l~~~y~~~~vl~~vsl~i~~---Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~ 78 (372)
T 1g29_1 2 AGVRLVDVWKVFGEVTAVREMSLEVKD---GEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78 (372)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEET---TCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG
T ss_pred CEEEEEeEEEEECCEEEEeeeEEEEcC---CCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH
Confidence 479999999999998999999999999 9999999999999999999999998 345555533211
Q ss_pred ---------h---cCCCCCHHHHHHHh----C--chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CC
Q 025114 94 ---------Q---SVDGTSVAEIFKLY----G--EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KG 151 (257)
Q Consensus 94 ---------~---~~~~~~v~e~~~~~----g--~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~ 151 (257)
+ .+..+|+.+++.+. + ....+++..++++.+++.+ +.+.+|||||+||+++|++|. +|
T Consensus 79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P 158 (372)
T 1g29_1 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKP 158 (372)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 1 12467898887653 1 1122345678899988854 889999999999999998886 79
Q ss_pred cEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 152 ISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 152 ~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
++++||||+++| ++++.+. |.+++.++||++++..+| |++..|.+|++...|++++++
T Consensus 159 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~a---dri~vl~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 159 QVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMG---DRIAVMNRGVLQQVGSPDEVY 228 (372)
T ss_dssp SEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHC---SEEEEEETTEEEEEECHHHHH
T ss_pred CEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhC---CEEEEEeCCEEEEeCCHHHHH
Confidence 999999999998 4555443 889999999987777777 777777777766556555444
No 14
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.97 E-value=1e-33 Score=246.13 Aligned_cols=177 Identities=21% Similarity=0.199 Sum_probs=135.7
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC----Cceecchhhh----------
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG----YSFFDCDTLI---------- 92 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg----~~~~d~~~~~---------- 92 (257)
++|+++||++.|+++++|+|+||+|++ |++++|+||||||||||+|+|+|++. .+++++.++.
T Consensus 5 ~~l~i~~l~~~y~~~~vl~~vsl~i~~---Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 81 (262)
T 1b0u_A 5 NKLHVIDLHKRYGGHEVLKGVSLQARA---GDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 81 (262)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECT---TCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEE
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccc
Confidence 479999999999998999999999999 99999999999999999999999983 3455543221
Q ss_pred ----------h-------h---cCCCCCHHHHHHHh-----Cc--hHHHHHHHHHHHHhccc----CccccccChhHhHH
Q 025114 93 ----------E-------Q---SVDGTSVAEIFKLY-----GE--GFFREKETEVLQKLSLM----RQLVVSTGGGAVTR 141 (257)
Q Consensus 93 ----------~-------~---~~~~~~v~e~~~~~-----g~--~~~~~~~~~~l~~l~~~----~~~v~~lsgG~~qr 141 (257)
. + .+..+|+.+.+... +. ...+++..++++.+++. ++.+..|||||+||
T Consensus 82 ~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qR 161 (262)
T 1b0u_A 82 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQR 161 (262)
T ss_dssp ESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHH
T ss_pred ccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHH
Confidence 0 1 12356888877552 11 11234456788888873 47899999999999
Q ss_pred HHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccc
Q 025114 142 PINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN 209 (257)
Q Consensus 142 ~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~ 209 (257)
+.+|+++. +|++++|||||++| ++++++.|.+++.++||++.+..+| |++..|.+|++...++++
T Consensus 162 v~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~---d~v~~l~~G~i~~~g~~~ 238 (262)
T 1b0u_A 162 VSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVS---SHVIFLHQGKIEEEGDPE 238 (262)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHC---SEEEEEETTEEEEEECHH
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC---CEEEEEECCEEEEeCCHH
Confidence 99998876 79999999999998 4556555889999999977666666 676666666554444443
No 15
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.97 E-value=1.1e-33 Score=255.55 Aligned_cols=180 Identities=19% Similarity=0.228 Sum_probs=140.9
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh----------
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI---------- 92 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~---------- 92 (257)
.+|+++||+|.|+++++|+++||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 2 ~~l~~~~l~~~y~~~~vl~~vsl~i~~---Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 78 (359)
T 2yyz_A 2 PSIRVVNLKKYFGKVKAVDGVSFEVKD---GEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVG 78 (359)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECT---TCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEE
T ss_pred cEEEEEEEEEEECCEEEEeeeEEEEcC---CCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEE
Confidence 469999999999998999999999999 9999999999999999999999998 44566654331
Q ss_pred --hh---cCCCCCHHHHHHHhCc----h--HHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEE
Q 025114 93 --EQ---SVDGTSVAEIFKLYGE----G--FFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLD 157 (257)
Q Consensus 93 --~~---~~~~~~v~e~~~~~g~----~--~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LD 157 (257)
.+ .+..+|+.+++.+... . ..+++..++++.+++.+ +.+.+|||||+||+++|+++. +|++++||
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLD 158 (359)
T 2yyz_A 79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFD 158 (359)
T ss_dssp EECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 11 1246789998876321 1 11245667899998854 889999999999999998886 79999999
Q ss_pred CCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 158 VPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 158 ep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
||+++| ++++.+. |.+++.++||++++..+| |++..|.+|++...|+++++.
T Consensus 159 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~a---dri~vl~~G~i~~~g~~~~l~ 222 (359)
T 2yyz_A 159 EPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMA---SRIAVFNQGKLVQYGTPDEVY 222 (359)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHC---SEEEEEETTEEEEEECHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhC---CEEEEEECCEEEEeCCHHHHH
Confidence 999998 4555443 889999999987777776 777677777665555554443
No 16
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.97 E-value=9.7e-34 Score=255.74 Aligned_cols=180 Identities=20% Similarity=0.213 Sum_probs=141.2
Q ss_pred ceEEecceeeeeCccc--cccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-------
Q 025114 27 SVLESGNVHAPIDEAQ--VLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------- 93 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~--~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------- 93 (257)
.+|+++||+|.|++++ +|+++||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++..
T Consensus 2 ~~l~i~~l~~~y~~~~~~vl~~vsl~i~~---Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~ 78 (353)
T 1oxx_K 2 VRIIVKNVSKVFKKGKVVALDNVNINIEN---GERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78 (353)
T ss_dssp CCEEEEEEEEEEGGGTEEEEEEEEEEECT---TCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSC
T ss_pred cEEEEEeEEEEECCEeeeeEeceEEEECC---CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCC
Confidence 4699999999999888 99999999999 9999999999999999999999998 345555533211
Q ss_pred ----------h---cCCCCCHHHHHHHhCc------hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-C
Q 025114 94 ----------Q---SVDGTSVAEIFKLYGE------GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-K 150 (257)
Q Consensus 94 ----------~---~~~~~~v~e~~~~~g~------~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~ 150 (257)
+ .+..+|+.+++..... ...+++..++++.+++.+ +.+.+|||||+||+++|++|. +
T Consensus 79 ~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~ 158 (353)
T 1oxx_K 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKD 158 (353)
T ss_dssp GGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred hhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 1 1246789998876321 122345678899998864 889999999999999998886 7
Q ss_pred CcEEEEECCHHHH-----------HHHHHh-cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 151 GISVWLDVPLEAL-----------AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 151 ~~vl~LDep~~~L-----------~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
|++++||||+++| ++++.+ .|.+++.++||++++..+| |++..|.+|++...|++++++
T Consensus 159 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~a---dri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 159 PSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIA---DRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp CSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHC---SEEEEEETTEEEEEECHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC---CEEEEEECCEEEEEcCHHHHH
Confidence 9999999999998 455544 3889999999987777776 777677777665555554443
No 17
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.97 E-value=1.9e-33 Score=253.50 Aligned_cols=182 Identities=20% Similarity=0.248 Sum_probs=141.9
Q ss_pred CcceEEecceeeee-CccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh-------
Q 025114 25 SASVLESGNVHAPI-DEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI------- 92 (257)
Q Consensus 25 ~~~~l~~~~l~~~~-~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~------- 92 (257)
..++|+++||+|.| +++++|+++||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~---Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r 87 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIRE---GEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKR 87 (355)
T ss_dssp CCEEEEEEEEEECCTTSTTCEEEEEEEEET---TCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGS
T ss_pred CCceEEEEEEEEEEcCCCEEEeeeEEEECC---CCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhC
Confidence 35689999999999 888899999999999 9999999999999999999999998 34555554321
Q ss_pred -----hh---cCCCCCHHHHHHHh----C--chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEE
Q 025114 93 -----EQ---SVDGTSVAEIFKLY----G--EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISV 154 (257)
Q Consensus 93 -----~~---~~~~~~v~e~~~~~----g--~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl 154 (257)
.+ .+..+|+.+++... + ....+++..++++.+++.+ +.+.+|||||+||+++|++|. +|+++
T Consensus 88 ~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lL 167 (355)
T 1z47_A 88 NVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVL 167 (355)
T ss_dssp SEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 11 23467899887652 1 1122345678899998854 889999999999999998886 79999
Q ss_pred EEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 155 WLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 155 ~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
+||||+++| ++++.+. |.+++.++||++++..+| |++..|.+|++...|++++++
T Consensus 168 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~a---dri~vl~~G~i~~~g~~~~l~ 234 (355)
T 1z47_A 168 LFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVA---DRVLVLHEGNVEQFGTPEEVY 234 (355)
T ss_dssp EEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHC---SEEEEEETTEEEEEECHHHHH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhC---CEEEEEECCEEEEEcCHHHHH
Confidence 999999998 4555443 889999999987777776 777677777665555554443
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.97 E-value=1.6e-33 Score=255.73 Aligned_cols=181 Identities=15% Similarity=0.159 Sum_probs=141.4
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh---------
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI--------- 92 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~--------- 92 (257)
|.+|+++||+|.|+++++|+++||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 9 M~~l~~~~l~~~y~~~~vl~~vsl~i~~---Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i 85 (372)
T 1v43_A 9 MVEVKLENLTKRFGNFTAVNKLNLTIKD---GEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNI 85 (372)
T ss_dssp CCCEEEEEEEEEETTEEEEEEEEEEECT---TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTE
T ss_pred eeeEEEEEEEEEECCEEEEeeeEEEECC---CCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcE
Confidence 4579999999999998999999999999 9999999999999999999999998 44566554321
Q ss_pred ---hh---cCCCCCHHHHHHHhCc------hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEE
Q 025114 93 ---EQ---SVDGTSVAEIFKLYGE------GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWL 156 (257)
Q Consensus 93 ---~~---~~~~~~v~e~~~~~g~------~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~L 156 (257)
.+ .+..+|+.+++.+... ...+++..++++.+++.+ +.+.+|||||+||+++|++|. +|++++|
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLL 165 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLM 165 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEE
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 01 2246789998876321 122345678899998854 889999999999999998886 7999999
Q ss_pred ECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 157 DVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 157 Dep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
|||+++| ++++.+. |.+++.++||++++..+| |++..|.+|++...|++++++
T Consensus 166 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~a---dri~vl~~G~i~~~g~~~~l~ 230 (372)
T 1v43_A 166 DEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMG---DRIAVMNRGQLLQIGSPTEVY 230 (372)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHC---SEEEEEETTEEEEEECHHHHH
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC---CEEEEEECCEEEEeCCHHHHH
Confidence 9999998 4555443 889999999987777777 777777777765555554443
No 19
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.97 E-value=5e-33 Score=240.61 Aligned_cols=189 Identities=19% Similarity=0.159 Sum_probs=139.1
Q ss_pred ceEEecceeeeeC-ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCC----ceecch-hhhhh---cCC
Q 025114 27 SVLESGNVHAPID-EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGY----SFFDCD-TLIEQ---SVD 97 (257)
Q Consensus 27 ~~l~~~~l~~~~~-~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~----~~~d~~-~~~~~---~~~ 97 (257)
++|+++||++.|+ ++++|+++||+|++ |++++|+||||||||||+|+|+|++.+ +.+... .++.+ .+.
T Consensus 3 ~~l~i~~l~~~y~~~~~vl~~isl~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~ 79 (253)
T 2nq2_C 3 KALSVENLGFYYQAENFLFQQLNFDLNK---GDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPF 79 (253)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEEEEET---TCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSS
T ss_pred ceEEEeeEEEEeCCCCeEEEEEEEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCC
Confidence 4799999999998 88899999999999 999999999999999999999999843 111000 01111 123
Q ss_pred CCCHHHHHHHhCc----------hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH
Q 025114 98 GTSVAEIFKLYGE----------GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL 163 (257)
Q Consensus 98 ~~~v~e~~~~~g~----------~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L 163 (257)
..|+.+++..... ....++..++++.+++.+ +.+..|||||+||+.+|+++. +|++++||||+++|
T Consensus 80 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~L 159 (253)
T 2nq2_C 80 AYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSAL 159 (253)
T ss_dssp CCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTS
T ss_pred CCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 5688888765321 122344567888888754 789999999999999998886 79999999999998
Q ss_pred -----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecchhhhhhcc
Q 025114 164 -----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLG 222 (257)
Q Consensus 164 -----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~~l~~~~~ 222 (257)
++++.+. |.+++.++||++.+..+| |++..|.+|+ ...+++++++..+.+...|+
T Consensus 160 D~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~---d~v~~l~~G~-~~~g~~~~~~~~~~~~~~~~ 226 (253)
T 2nq2_C 160 DLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIA---NKTLLLNKQN-FKFGETRNILTSENLTALFH 226 (253)
T ss_dssp CHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHC---SEEEEEETTE-EEEEEHHHHCCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC---CEEEEEeCCe-EecCCHHHHhCcHHHHHHhC
Confidence 4555544 889999999977666666 6766666666 44455554444334444443
No 20
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.97 E-value=9.5e-33 Score=236.37 Aligned_cols=168 Identities=21% Similarity=0.197 Sum_probs=128.4
Q ss_pred eEEecceeeeeCc----cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh-------
Q 025114 28 VLESGNVHAPIDE----AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI------- 92 (257)
Q Consensus 28 ~l~~~~l~~~~~~----~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~------- 92 (257)
+|+++||++.|++ ..+|+|+||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~---Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~ 77 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKE---GEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDEL 77 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECT---TCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcC---CCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHH
Confidence 5899999999974 4699999999999 9999999999999999999999998 34566653220
Q ss_pred -----------hh---cCCCCCHHHHHHHh-------C--chHHHHHHHHHHHHhccc----CccccccChhHhHHHHHH
Q 025114 93 -----------EQ---SVDGTSVAEIFKLY-------G--EGFFREKETEVLQKLSLM----RQLVVSTGGGAVTRPINW 145 (257)
Q Consensus 93 -----------~~---~~~~~~v~e~~~~~-------g--~~~~~~~~~~~l~~l~~~----~~~v~~lsgG~~qr~~~a 145 (257)
.+ .+..+|+.+++... + .....++..++++.+++. ++++.+|||||+||+.+|
T Consensus 78 ~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iA 157 (235)
T 3tif_A 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIA 157 (235)
T ss_dssp HHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred HHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHH
Confidence 01 12356888877542 1 112234456778888874 367999999999999999
Q ss_pred HHhh-CCcEEEEECCHHHH-----------HHHHHhc-CCCCccccCCCCCCchhhHHHHHHHHHHHHHH
Q 025114 146 RYMQ-KGISVWLDVPLEAL-----------AQRIAAV-GTDSRPLLHQCESGDAYTEALNRLSTLWEERG 202 (257)
Q Consensus 146 ~~l~-~~~vl~LDep~~~L-----------~~rl~~~-g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~ 202 (257)
+++. +|++++|||||++| +++++.. |.++++++||++. ..+| |++..|.+|++
T Consensus 158 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~-~~~~---d~i~~l~~G~i 223 (235)
T 3tif_A 158 RALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV-ARFG---ERIIYLKDGEV 223 (235)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHH-HTTS---SEEEEEETTEE
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHH-HHhC---CEEEEEECCEE
Confidence 8886 79999999999998 4666544 8999999999763 3566 67666655544
No 21
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.97 E-value=2.1e-32 Score=236.23 Aligned_cols=169 Identities=24% Similarity=0.331 Sum_probs=124.2
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhh--h----CCceecchhhh--------
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGV--L----GYSFFDCDTLI-------- 92 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~--l----g~~~~d~~~~~-------- 92 (257)
++|+++||++.|+++++|+|+||+|++ |++++|+||||||||||+|+|+|+ + |.+++++.++.
T Consensus 2 ~~l~~~~l~~~y~~~~vl~~vsl~i~~---Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~ 78 (250)
T 2d2e_A 2 SQLEIRDLWASIDGETILKGVNLVVPK---GEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERA 78 (250)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEET---TCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHH
T ss_pred ceEEEEeEEEEECCEEEEeceEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHH
Confidence 479999999999998999999999999 999999999999999999999997 3 44556553321
Q ss_pred h-------h---cCCCCCHHHHHHHh-----Cc----hHHHHHHHHHHHHhccc-C---ccccc-cChhHhHHHHHHHHh
Q 025114 93 E-------Q---SVDGTSVAEIFKLY-----GE----GFFREKETEVLQKLSLM-R---QLVVS-TGGGAVTRPINWRYM 148 (257)
Q Consensus 93 ~-------~---~~~~~~v~e~~~~~-----g~----~~~~~~~~~~l~~l~~~-~---~~v~~-lsgG~~qr~~~a~~l 148 (257)
. + .+.+.++.+++... +. ....++..++++.+++. + +.+.. |||||+||+.+|+++
T Consensus 79 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL 158 (250)
T 2d2e_A 79 RKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLL 158 (250)
T ss_dssp HTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHH
T ss_pred hCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHH
Confidence 0 1 11345777776432 10 11234456788888883 3 67888 999999999999887
Q ss_pred h-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchh-hHHHHHHHHHHHHH
Q 025114 149 Q-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAY-TEALNRLSTLWEER 201 (257)
Q Consensus 149 ~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~-~~~~~~v~~l~~~r 201 (257)
. +|++++|||||++| ++++.+.|.+++.++||++.+..+ | |++..|.+|+
T Consensus 159 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~---d~v~~l~~G~ 221 (250)
T 2d2e_A 159 VLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQP---DKVHVMMDGR 221 (250)
T ss_dssp HHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCC---SEEEEEETTE
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcC---CEEEEEECCE
Confidence 6 89999999999998 345544578999999998776655 4 6665555554
No 22
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.97 E-value=1.1e-32 Score=248.24 Aligned_cols=177 Identities=16% Similarity=0.189 Sum_probs=138.9
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh-----------
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI----------- 92 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~----------- 92 (257)
||+++||+|.|+++ +|+++||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 1 ml~~~~l~~~y~~~-~l~~vsl~i~~---Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 76 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNLSLKVES---GEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAF 76 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECT---TCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEE
T ss_pred CEEEEEEEEEECCE-EEeeeEEEEcC---CCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEE
Confidence 48999999999988 99999999999 9999999999999999999999998 44566654321
Q ss_pred -hh---cCCCCCHHHHHHHhC----chHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECCH
Q 025114 93 -EQ---SVDGTSVAEIFKLYG----EGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPL 160 (257)
Q Consensus 93 -~~---~~~~~~v~e~~~~~g----~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~ 160 (257)
.+ .+..+|+.+++.... .... ++..++++.+++.+ +.+.+|||||+||+++|+++. +|++++||||+
T Consensus 77 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~ 155 (348)
T 3d31_A 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDP-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPL 155 (348)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCH-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHH-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 11 134678998876521 1111 45678899998864 889999999999999998887 79999999999
Q ss_pred HHH-----------HHHHHh-cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 161 EAL-----------AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 161 ~~L-----------~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
++| ++++.+ .|.+++.++||++++..+| |++..|.+|++...|+++++.
T Consensus 156 s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~a---dri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 156 SALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMA---DRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHC---SEEEEESSSCEEEEECHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC---CEEEEEECCEEEEECCHHHHH
Confidence 998 455544 3889999999987777776 777677777665555554443
No 23
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.97 E-value=2.5e-32 Score=237.79 Aligned_cols=179 Identities=20% Similarity=0.197 Sum_probs=139.7
Q ss_pred eEEecceeeeeC--c---cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhh-------
Q 025114 28 VLESGNVHAPID--E---AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTL------- 91 (257)
Q Consensus 28 ~l~~~~l~~~~~--~---~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~------- 91 (257)
+|+++||++.|+ + +++|+++||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~---Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINE---GECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRR 78 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECT---TCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcC---CCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhh
Confidence 689999999997 4 5799999999999 9999999999999999999999998 3455555321
Q ss_pred ----hhh----cCCCCCHHHHHHHhCc-----hHHHHHHHHHHHHhccc--C---ccccccChhHhHHHHHHHHhh-CCc
Q 025114 92 ----IEQ----SVDGTSVAEIFKLYGE-----GFFREKETEVLQKLSLM--R---QLVVSTGGGAVTRPINWRYMQ-KGI 152 (257)
Q Consensus 92 ----~~~----~~~~~~v~e~~~~~g~-----~~~~~~~~~~l~~l~~~--~---~~v~~lsgG~~qr~~~a~~l~-~~~ 152 (257)
+.+ .+...|+.+.+..... ...+++..++++.+++. + +.+..|||||+||+.+|+++. +|+
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 158 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPD 158 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 111 1235788888766321 11234566789999887 4 789999999999999998886 799
Q ss_pred EEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 153 SVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 153 vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
+++|||||++| +++++..|.+++.++||++.+..+| |++..|.+|++...++++.++
T Consensus 159 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~---d~v~~l~~G~i~~~g~~~~~~ 226 (266)
T 2yz2_A 159 ILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHV---DRVVVLEKGKKVFDGTRMEFL 226 (266)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGC---SEEEEEETTEEEEEEEHHHHH
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhC---CEEEEEECCEEEEeCCHHHHh
Confidence 99999999998 4555545889999999999888888 888777777665445444443
No 24
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.97 E-value=7.1e-32 Score=235.10 Aligned_cols=178 Identities=20% Similarity=0.227 Sum_probs=130.0
Q ss_pred CcceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh------CCceecchhhh------
Q 025114 25 SASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL------GYSFFDCDTLI------ 92 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l------g~~~~d~~~~~------ 92 (257)
.+++|+++||++.|+++++|+|+||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 17 ~~~~l~~~~l~~~y~~~~vl~~vsl~i~~---Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~ 93 (267)
T 2zu0_C 17 GSHMLSIKDLHVSVEDKAILRGLSLDVHP---GEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPED 93 (267)
T ss_dssp ---CEEEEEEEEEETTEEEEEEEEEEECT---TCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHH
T ss_pred CCceEEEEeEEEEECCEEEEEeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHH
Confidence 35689999999999988999999999999 9999999999999999999999983 45566654321
Q ss_pred --h-------h---cCCCCCHHHHHHHh--------C-----chHHHHHHHHHHHHhccc-C---cccc-ccChhHhHHH
Q 025114 93 --E-------Q---SVDGTSVAEIFKLY--------G-----EGFFREKETEVLQKLSLM-R---QLVV-STGGGAVTRP 142 (257)
Q Consensus 93 --~-------~---~~~~~~v~e~~~~~--------g-----~~~~~~~~~~~l~~l~~~-~---~~v~-~lsgG~~qr~ 142 (257)
. + .+.++++.+++... + .....++..++++.+++. . +.+. .|||||+||+
T Consensus 94 ~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv 173 (267)
T 2zu0_C 94 RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRN 173 (267)
T ss_dssp HHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHH
T ss_pred HhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHH
Confidence 0 0 11245666665431 1 011223456788888884 2 5665 5999999999
Q ss_pred HHHHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchh-hHHHHHHHHHHHHHHHHHhcc
Q 025114 143 INWRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAY-TEALNRLSTLWEERGEAYANA 208 (257)
Q Consensus 143 ~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~-~~~~~~v~~l~~~r~~~y~~~ 208 (257)
.+|+++. +|++++|||||++| ++++++.|.+++.++||++.+..+ | |++..|.+|++..++++
T Consensus 174 ~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~---d~v~~l~~G~i~~~g~~ 249 (267)
T 2zu0_C 174 DILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKP---DYVHVLYQGRIVKSGDF 249 (267)
T ss_dssp HHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCC---SEEEEEETTEEEEEECT
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcC---CEEEEEECCEEEEEcCH
Confidence 9998876 89999999999998 233333478899999998776654 6 77766666655444443
No 25
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.96 E-value=1e-29 Score=219.36 Aligned_cols=229 Identities=70% Similarity=1.144 Sum_probs=169.5
Q ss_pred ceEEecce-eeee-CccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHH
Q 025114 27 SVLESGNV-HAPI-DEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEI 104 (257)
Q Consensus 27 ~~l~~~~l-~~~~-~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~ 104 (257)
++|+++|+ ++.| ++.++|+++||+|.+.+.|++++|+|++||||||++++|++.+|+.++|.+.+++....+.++.++
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~g~~i~~i 95 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTSVAEI 95 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHSTTSCHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhcCccHHHH
Confidence 57999999 9999 778899999999997667899999999999999999999999999999999988776668899999
Q ss_pred HHHhCchHHHHHHHHHHHHhccc-CccccccChhHhHHHHHHHHhhCCcEEEEECCHHHHHHHHHhcCCCCccccCCCCC
Q 025114 105 FKLYGEGFFREKETEVLQKLSLM-RQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCES 183 (257)
Q Consensus 105 ~~~~g~~~~~~~~~~~l~~l~~~-~~~v~~lsgG~~qr~~~a~~l~~~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~ 183 (257)
|...|+..|++.+.+++..+... +..+.+++||...+...+..+..+.++||+.|.+.+.+|+...+...+|+..+.+.
T Consensus 96 ~~~~ge~~fr~~e~~~l~~l~~~~~~~Via~GgG~v~~~~~~~~l~~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~ 175 (250)
T 3nwj_A 96 FEHFGESVFREKETEALKKLSLMYHQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDES 175 (250)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHCSSEEEECCGGGGGSHHHHHHHTTSEEEEEECCHHHHHHHHHC--------------
T ss_pred HHHhCcHHHHHHHHHHHHHHHhhcCCcEEecCCCeecCHHHHHHHhCCcEEEEECCHHHHHHHHhhcCCCCCCcccCCCc
Confidence 99999999998888888776655 57889999999998888888877889999999999999998644456777654222
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhcccceecchhhhhhccccCCCCCCHHHHHHHHHHHHHhhhcccchhhhc
Q 025114 184 GDAYTEALNRLSTLWEERGEAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLKEEDDMAIA 255 (257)
Q Consensus 184 ~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~ 255 (257)
...+....+++..++..|.+.|..++.++..+.+...-|+++++..++++++.+|++.+..++..+..|+.+
T Consensus 176 ~d~~~~~~~~l~~l~~eR~~lY~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~~~~~~~~~~~ 247 (250)
T 3nwj_A 176 GDTYTAALNRLSTIWDARGEAYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYLEKEDGMARP 247 (250)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHHHTC------
T ss_pred ccchhhHHHHHHHHHHHHHHHHhhCCEEEEecccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCCC
Confidence 111111236788999999999999888887777777777889999999999999999999998877666543
No 26
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.96 E-value=7.3e-31 Score=221.60 Aligned_cols=162 Identities=20% Similarity=0.192 Sum_probs=128.1
Q ss_pred CcceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhh---------
Q 025114 25 SASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTL--------- 91 (257)
Q Consensus 25 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~--------- 91 (257)
..++|+++||++.|++ ++|+++||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++
T Consensus 7 ~~~~l~~~~ls~~y~~-~il~~vsl~i~~---Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~ 82 (214)
T 1sgw_A 7 HGSKLEIRDLSVGYDK-PVLERITMTIEK---GNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFF 82 (214)
T ss_dssp --CEEEEEEEEEESSS-EEEEEEEEEEET---TCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEE
T ss_pred CCceEEEEEEEEEeCC-eEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEE
Confidence 3468999999999998 999999999999 9999999999999999999999998 3456655432
Q ss_pred hhh---cCCCCCHHHHHHHh----C-chHHHHHHHHHHHHhccc--CccccccChhHhHHHHHHHHhh-CCcEEEEECCH
Q 025114 92 IEQ---SVDGTSVAEIFKLY----G-EGFFREKETEVLQKLSLM--RQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPL 160 (257)
Q Consensus 92 ~~~---~~~~~~v~e~~~~~----g-~~~~~~~~~~~l~~l~~~--~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~ 160 (257)
+.+ .+.++|+.+++... + ... .++..++++.+++. ++.+..|||||+||+.+++++. +|++++||||+
T Consensus 83 v~q~~~~~~~~tv~enl~~~~~~~~~~~~-~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPt 161 (214)
T 1sgw_A 83 LPEEIIVPRKISVEDYLKAVASLYGVKVN-KNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV 161 (214)
T ss_dssp ECSSCCCCTTSBHHHHHHHHHHHTTCCCC-HHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred EeCCCcCCCCCCHHHHHHHHHHhcCCchH-HHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 111 12356888877542 1 111 34556788888876 4788999999999999998886 79999999999
Q ss_pred HHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHH
Q 025114 161 EAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRL 194 (257)
Q Consensus 161 ~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v 194 (257)
++| ++++.+.|.+++.++|+++.+..+| |++
T Consensus 162 s~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~---d~v 203 (214)
T 1sgw_A 162 VAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVN---ENL 203 (214)
T ss_dssp TTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEE---EEG
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC---CEE
Confidence 998 4555545788999999998888877 665
No 27
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.96 E-value=1.4e-31 Score=231.00 Aligned_cols=175 Identities=21% Similarity=0.144 Sum_probs=132.0
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---CCceecchhhh-----------
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---GYSFFDCDTLI----------- 92 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---g~~~~d~~~~~----------- 92 (257)
++|+++||++. ++|+++||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 3 ~~l~~~~l~~~----~vl~~vsl~i~~---Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 3 IVMQLQDVAES----TRLGPLSGEVRA---GEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEEET----TTEEEEEEEEET---TCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHE
T ss_pred cEEEEEceEEE----EEEeeeEEEEcC---CCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceE
Confidence 37999999987 699999999999 9999999999999999999999988 44555554321
Q ss_pred ---hh---cCCCCCHHHHHHHhCchH-HHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCc-------EE
Q 025114 93 ---EQ---SVDGTSVAEIFKLYGEGF-FREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGI-------SV 154 (257)
Q Consensus 93 ---~~---~~~~~~v~e~~~~~g~~~-~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~-------vl 154 (257)
.+ .+.+.|+.+++....... .++...++++.+++.+ +.+..|||||+||+.+|+++. +|+ ++
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~ll 155 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLL 155 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEE
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEE
Confidence 01 123568888886532111 1445667889888854 789999999999999998876 799 99
Q ss_pred EEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccce
Q 025114 155 WLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANAR 211 (257)
Q Consensus 155 ~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~ 211 (257)
+||||+++| ++++.+.|.+++.++||++.+..+| |++..|.+|++...++++++
T Consensus 156 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~---d~v~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 156 LLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHA---HRAWLLKGGKMLASGRREEV 220 (249)
T ss_dssp EESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHC---SEEEEEETTEEEEEEEHHHH
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC---CEEEEEECCEEEEeCCHHHH
Confidence 999999998 4555545889999999976655565 66655655655444444333
No 28
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.96 E-value=3.9e-31 Score=227.02 Aligned_cols=173 Identities=15% Similarity=0.138 Sum_probs=130.1
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh-----------
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI----------- 92 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~----------- 92 (257)
||+++||++.|++ +|+++||+|++ ++++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 1 ml~~~~l~~~y~~--~l~~isl~i~~----e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~ 74 (240)
T 2onk_A 1 MFLKVRAEKRLGN--FRLNVDFEMGR----DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGF 74 (240)
T ss_dssp CCEEEEEEEEETT--EEEEEEEEECS----SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBC
T ss_pred CEEEEEEEEEeCC--EEeeeEEEECC----EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEE
Confidence 4789999999986 49999999994 899999999999999999999998 34555553321
Q ss_pred -hh---cCCCCCHHHHHHHhCc----hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECCH
Q 025114 93 -EQ---SVDGTSVAEIFKLYGE----GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPL 160 (257)
Q Consensus 93 -~~---~~~~~~v~e~~~~~g~----~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~ 160 (257)
.+ .+..+|+.+++..... ...+++..++++.+++.+ +.+..|||||+||+.+|+++. +|++++|||||
T Consensus 75 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt 154 (240)
T 2onk_A 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPL 154 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTT
T ss_pred EcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 11 1235688888765321 111344567888888854 789999999999999998876 79999999999
Q ss_pred HHH-----------HHHHHh-cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccc
Q 025114 161 EAL-----------AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN 209 (257)
Q Consensus 161 ~~L-----------~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~ 209 (257)
++| ++++.+ .|.+++.++||++.+..+| |++..|.+|++...++++
T Consensus 155 s~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~---d~i~~l~~G~i~~~g~~~ 212 (240)
T 2onk_A 155 SAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLA---DEVAVMLNGRIVEKGKLK 212 (240)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHC---SEEEEEETTEEEEEECHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC---CEEEEEECCEEEEECCHH
Confidence 998 455543 3889999999977666666 666666666554444443
No 29
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.96 E-value=4.5e-31 Score=227.58 Aligned_cols=174 Identities=20% Similarity=0.210 Sum_probs=126.8
Q ss_pred eEEecceeeee--CccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh---------
Q 025114 28 VLESGNVHAPI--DEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI--------- 92 (257)
Q Consensus 28 ~l~~~~l~~~~--~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~--------- 92 (257)
-++++||++.| +++.+|+++||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++.
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 83 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQ---GEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 83 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEET---TCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHH
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHh
Confidence 47899999999 467899999999999 9999999999999999999999998 34566554321
Q ss_pred -----hh--cCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC--------------ccccccChhHhHHHHHHHHhh-C
Q 025114 93 -----EQ--SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR--------------QLVVSTGGGAVTRPINWRYMQ-K 150 (257)
Q Consensus 93 -----~~--~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~--------------~~v~~lsgG~~qr~~~a~~l~-~ 150 (257)
.+ .+...|+.+++.........+...++++.+++.+ +.+..|||||+||+.+|+++. +
T Consensus 84 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~ 163 (247)
T 2ff7_A 84 QVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN 163 (247)
T ss_dssp HEEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred cEEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence 01 1123488888765321111233345555555432 346799999999999998886 7
Q ss_pred CcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccc
Q 025114 151 GISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN 209 (257)
Q Consensus 151 ~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~ 209 (257)
|++++|||||++| ++++. .|.++++++|+++.+. .| |++..|.+|++...++++
T Consensus 164 p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~~~-~~---d~v~~l~~G~i~~~g~~~ 228 (247)
T 2ff7_A 164 PKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTVK-NA---DRIIVMEKGKIVEQGKHK 228 (247)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGGGT-TS---SEEEEEETTEEEEEECHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHH-hC---CEEEEEECCEEEEECCHH
Confidence 9999999999998 34453 4789999999987654 36 777666666554444433
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.96 E-value=4.4e-31 Score=227.04 Aligned_cols=151 Identities=21% Similarity=0.234 Sum_probs=115.0
Q ss_pred eEEecceeeee-CccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh---------
Q 025114 28 VLESGNVHAPI-DEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE--------- 93 (257)
Q Consensus 28 ~l~~~~l~~~~-~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~--------- 93 (257)
||+++||++.| +++++|+++||+|++ |++++|+||||||||||+|+|+|++ |.+.+++.++..
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQP---NSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQ 77 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECT---TEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTT
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhh
Confidence 48999999999 678899999999999 9999999999999999999999997 556666643311
Q ss_pred -----h--cCCCCCHHHHHHHh-CchHHHHHHHHHHHHhcccC--------------ccccccChhHhHHHHHHHHhh-C
Q 025114 94 -----Q--SVDGTSVAEIFKLY-GEGFFREKETEVLQKLSLMR--------------QLVVSTGGGAVTRPINWRYMQ-K 150 (257)
Q Consensus 94 -----~--~~~~~~v~e~~~~~-g~~~~~~~~~~~l~~l~~~~--------------~~v~~lsgG~~qr~~~a~~l~-~ 150 (257)
+ .+...|+.+++... ......+...++++.+++.+ +.+..|||||+||+.+|+++. +
T Consensus 78 i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~ 157 (243)
T 1mv5_A 78 IGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRN 157 (243)
T ss_dssp CCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred EEEEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcC
Confidence 0 01133777776543 11112234456677766543 245799999999999998876 8
Q ss_pred CcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCC
Q 025114 151 GISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCE 182 (257)
Q Consensus 151 ~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~ 182 (257)
|++++||||+++| ++++. .|.+++.++|+++
T Consensus 158 p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~ 199 (243)
T 1mv5_A 158 PKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS 199 (243)
T ss_dssp CSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH
Confidence 9999999999998 45555 4789999999943
No 31
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.95 E-value=2.2e-30 Score=236.40 Aligned_cols=179 Identities=17% Similarity=0.124 Sum_probs=135.4
Q ss_pred cceEEecceeeee--CccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---CCceecchhhhh-------
Q 025114 26 ASVLESGNVHAPI--DEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---GYSFFDCDTLIE------- 93 (257)
Q Consensus 26 ~~~l~~~~l~~~~--~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---g~~~~d~~~~~~------- 93 (257)
...|+++||+|.| +++.+|++|||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++..
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~---Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~r 93 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAILENISFSISP---GQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWR 93 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSEEEEEEEECT---TCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHH
T ss_pred CCeEEEEEEEEEecCCCeEEeeceeEEEcC---CCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHh
Confidence 3569999999999 678899999999999 9999999999999999999999987 556666654310
Q ss_pred h---------cCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC---ccccc-----------cChhHhHHHHHHHHhh-
Q 025114 94 Q---------SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR---QLVVS-----------TGGGAVTRPINWRYMQ- 149 (257)
Q Consensus 94 ~---------~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~---~~v~~-----------lsgG~~qr~~~a~~l~- 149 (257)
. .....|+.+++..... ...++..++++.+++.+ +.+.. |||||+||+++|+++.
T Consensus 94 r~ig~v~Q~~~lf~~tv~enl~~~~~-~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~ 172 (390)
T 3gd7_A 94 KAFGVIPQKVFIFSGTFRKNLDPNAA-HSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS 172 (390)
T ss_dssp HTEEEESCCCCCCSEEHHHHHCTTCC-SCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEcCCcccCccCHHHHhhhccc-cCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc
Confidence 1 1124578887754332 22345567888888754 66666 9999999999998886
Q ss_pred CCcEEEEECCHHHHH--------HHHHh--cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 150 KGISVWLDVPLEALA--------QRIAA--VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 150 ~~~vl~LDep~~~L~--------~rl~~--~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
+|++++||||+++|+ ..+++ .+.+++.++||++.. ..| |++..|.+|++..+|++.++.
T Consensus 173 ~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~-~~a---Dri~vl~~G~i~~~g~~~el~ 241 (390)
T 3gd7_A 173 KAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAM-LEC---DQFLVIEENKVRQYDSILELY 241 (390)
T ss_dssp TCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGG-TTC---SEEEEEETTEEEEESSHHHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHH-HhC---CEEEEEECCEEEEECCHHHHH
Confidence 799999999999983 22222 367899999997543 446 888788888776666555444
No 32
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.95 E-value=2.1e-30 Score=225.04 Aligned_cols=169 Identities=17% Similarity=0.114 Sum_probs=123.4
Q ss_pred ceEEecceeeeeCc---cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---CCceecchhhhh-------
Q 025114 27 SVLESGNVHAPIDE---AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---GYSFFDCDTLIE------- 93 (257)
Q Consensus 27 ~~l~~~~l~~~~~~---~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---g~~~~d~~~~~~------- 93 (257)
++|+++||++.|++ +++|+++||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++..
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~ 92 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPS---GTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIR 92 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECT---TCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHH
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECC---CCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHh
Confidence 46999999999986 4699999999999 9999999999999999999999987 445665543311
Q ss_pred -------h--cCCCCCHHHHHHHhCchHHHHHHHHHHHHhccc--------------CccccccChhHhHHHHHHHHhh-
Q 025114 94 -------Q--SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLM--------------RQLVVSTGGGAVTRPINWRYMQ- 149 (257)
Q Consensus 94 -------~--~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~--------------~~~v~~lsgG~~qr~~~a~~l~- 149 (257)
+ .+...|+.+++.........+...++++.+++. .+.+..|||||+||+.+|+++.
T Consensus 93 ~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~ 172 (260)
T 2ghi_A 93 SIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLK 172 (260)
T ss_dssp TTEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHH
T ss_pred ccEEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHc
Confidence 0 012347888876532111122333455544432 1456899999999999998876
Q ss_pred CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHH
Q 025114 150 KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGE 203 (257)
Q Consensus 150 ~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~ 203 (257)
+|++++||||+++| ++++. .+.++++++|+++.+. .| |++..|.+|++.
T Consensus 173 ~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~~~tviivtH~~~~~~-~~---d~i~~l~~G~i~ 232 (260)
T 2ghi_A 173 DPKIVIFDEATSSLDSKTEYLFQKAVEDLR-KNRTLIIIAHRLSTIS-SA---ESIILLNKGKIV 232 (260)
T ss_dssp CCSEEEEECCCCTTCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGST-TC---SEEEEEETTEEE
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHHHHH-hC---CEEEEEECCEEE
Confidence 89999999999998 34443 3778999999987654 36 777666666543
No 33
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.95 E-value=1.9e-30 Score=226.51 Aligned_cols=169 Identities=20% Similarity=0.189 Sum_probs=122.7
Q ss_pred ceEEecceeeeeCc---cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh------
Q 025114 27 SVLESGNVHAPIDE---AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------ 93 (257)
Q Consensus 27 ~~l~~~~l~~~~~~---~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------ 93 (257)
.+|+++||++.|++ +++|++|||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++..
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~---Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 91 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYP---GKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYL 91 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECT---TCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECC---CCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHH
Confidence 47999999999986 7899999999999 9999999999999999999999998 445666543311
Q ss_pred --------h--cCCCCCHHHHHHHhCc-----hHHHH-----HHHHHHHHh--ccc---CccccccChhHhHHHHHHHHh
Q 025114 94 --------Q--SVDGTSVAEIFKLYGE-----GFFRE-----KETEVLQKL--SLM---RQLVVSTGGGAVTRPINWRYM 148 (257)
Q Consensus 94 --------~--~~~~~~v~e~~~~~g~-----~~~~~-----~~~~~l~~l--~~~---~~~v~~lsgG~~qr~~~a~~l 148 (257)
+ .+...|+.+++..... ..... ...++++.+ ++. ++.+..|||||+||+.+|+++
T Consensus 92 ~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL 171 (271)
T 2ixe_A 92 HTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARAL 171 (271)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred hccEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHH
Confidence 1 1123588888765321 11111 113456665 443 377899999999999999887
Q ss_pred h-CCcEEEEECCHHHH-----------HHHHHh-cCCCCccccCCCCCCchhhHHHHHHHHHHHHHH
Q 025114 149 Q-KGISVWLDVPLEAL-----------AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTLWEERG 202 (257)
Q Consensus 149 ~-~~~vl~LDep~~~L-----------~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~ 202 (257)
. +|++++||||+++| ++++.. .|.++++++||++.+.. | |++..|.+|++
T Consensus 172 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~---d~v~~l~~G~i 234 (271)
T 2ixe_A 172 IRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-A---HHILFLKEGSV 234 (271)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-C---SEEEEEETTEE
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-C---CEEEEEECCEE
Confidence 6 79999999999998 333332 37889999999654432 4 55545544443
No 34
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.95 E-value=9.7e-31 Score=231.79 Aligned_cols=178 Identities=17% Similarity=0.178 Sum_probs=127.9
Q ss_pred ceEEecceeeeeC-ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh--------
Q 025114 27 SVLESGNVHAPID-EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE-------- 93 (257)
Q Consensus 27 ~~l~~~~l~~~~~-~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~-------- 93 (257)
..|+++||+|.|+ ++.+|+||||+|++ |++++|+||||||||||+|+|+|++ |.+++++.++..
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~---Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~ 128 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMP---GQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRS 128 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECT---TCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHH
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcC---CCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhc
Confidence 3599999999995 57899999999999 9999999999999999999999998 445666654311
Q ss_pred ------h--cCCCCCHHHHHHHhCchHHHHHHHHHHHHhccc--------------CccccccChhHhHHHHHHHHhh-C
Q 025114 94 ------Q--SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLM--------------RQLVVSTGGGAVTRPINWRYMQ-K 150 (257)
Q Consensus 94 ------~--~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~--------------~~~v~~lsgG~~qr~~~a~~l~-~ 150 (257)
+ ..+..|+.+++.........+...++++.+++. .+....|||||+||+++|+++. +
T Consensus 129 ~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~ 208 (306)
T 3nh6_A 129 HIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKA 208 (306)
T ss_dssp TEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred ceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhC
Confidence 1 112458888887543221122223333333321 1456789999999999998876 8
Q ss_pred CcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 151 GISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 151 ~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
|++++|||||++| ++++. .+.++++++|+++.+.. | |++..|.+|++...|++++++
T Consensus 209 p~iLlLDEPts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~~~~-a---D~i~vl~~G~iv~~G~~~el~ 276 (306)
T 3nh6_A 209 PGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVVAHRLSTVVN-A---DQILVIKDGCIVERGRHEALL 276 (306)
T ss_dssp CSEEEEECCSSCCCHHHHHHHHHHHHHHH-TTSEEEEECCSHHHHHT-C---SEEEEEETTEEEEEECHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEEcChHHHHc-C---CEEEEEECCEEEEECCHHHHH
Confidence 9999999999988 33433 36789999999765443 4 677666666665555554443
No 35
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.95 E-value=4e-30 Score=220.35 Aligned_cols=170 Identities=15% Similarity=0.158 Sum_probs=119.9
Q ss_pred ceEEecceeeeeC--ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchh-hhhh--cCC
Q 025114 27 SVLESGNVHAPID--EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDT-LIEQ--SVD 97 (257)
Q Consensus 27 ~~l~~~~l~~~~~--~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~-~~~~--~~~ 97 (257)
.+|+++||++.|+ ++++|+++||+|++ |++++|+||||||||||+|+|+|++ |.+.+++.. ++.+ .+.
T Consensus 2 ~~l~~~~l~~~y~~~~~~vl~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~ 78 (237)
T 2cbz_A 2 NSITVRNATFTWARSDPPTLNGITFSIPE---GALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQ 78 (237)
T ss_dssp CCEEEEEEEEESCTTSCCSEEEEEEEECT---TCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCC
T ss_pred CeEEEEEEEEEeCCCCCceeeeeEEEECC---CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCC
Confidence 4699999999997 57899999999999 9999999999999999999999987 334444311 0111 123
Q ss_pred CCCHHHHHHHhCc--hHHHHHHHH---HHHHhcc--------cCccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH
Q 025114 98 GTSVAEIFKLYGE--GFFREKETE---VLQKLSL--------MRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL 163 (257)
Q Consensus 98 ~~~v~e~~~~~g~--~~~~~~~~~---~l~~l~~--------~~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L 163 (257)
..|+.+++..... ....+...+ +++.++. ..+.+..|||||+||+.+|+++. +|++++||||+++|
T Consensus 79 ~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~L 158 (237)
T 2cbz_A 79 NDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAV 158 (237)
T ss_dssp SEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTS
T ss_pred CcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccc
Confidence 5678888765321 111111111 1222322 13678899999999999998876 89999999999998
Q ss_pred H--------HHHH-----hcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHH
Q 025114 164 A--------QRIA-----AVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGE 203 (257)
Q Consensus 164 ~--------~rl~-----~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~ 203 (257)
+ +.+. ..|.+++.++|+++.+. +| |++..|.+|++.
T Consensus 159 D~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~---d~v~~l~~G~i~ 207 (237)
T 2cbz_A 159 DAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QV---DVIIVMSGGKIS 207 (237)
T ss_dssp CHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GS---SEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hC---CEEEEEeCCEEE
Confidence 2 3331 13678899999987653 46 777666555443
No 36
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.95 E-value=2.2e-29 Score=218.86 Aligned_cols=176 Identities=24% Similarity=0.324 Sum_probs=132.4
Q ss_pred eEEecceeeeeCc----cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---CCceecchhh---------
Q 025114 28 VLESGNVHAPIDE----AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---GYSFFDCDTL--------- 91 (257)
Q Consensus 28 ~l~~~~l~~~~~~----~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---g~~~~d~~~~--------- 91 (257)
||+++||++.|++ +++|+++||+|+ |++++|+||||||||||+|+|+|++ |.+++++.++
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~----Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~~~~~~i 76 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN----GEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRY 76 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC----SSEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGCSCCTTE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC----CEEEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcchHHhhhe
Confidence 4899999999987 789999999998 8999999999999999999999997 2235554221
Q ss_pred ---hhhc--CCCCCHHHHHHHhCc--hHHHHHHHHHHHHhccc-C---ccccccChhHhHHHHHHHHhh-CCcEEEEECC
Q 025114 92 ---IEQS--VDGTSVAEIFKLYGE--GFFREKETEVLQKLSLM-R---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVP 159 (257)
Q Consensus 92 ---~~~~--~~~~~v~e~~~~~g~--~~~~~~~~~~l~~l~~~-~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep 159 (257)
+.+. . ..|+.+.+..... ....++..++++.+++. + +++..|||||+||+.+|+++. +|++++||||
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEP 155 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEP 155 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECT
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 1121 2 4578777654321 11134556788999886 4 789999999999999998876 7999999999
Q ss_pred HHHHH--------HHHHhcCCCCccccCCCCCCchhhHHHH-HHHHHHHHHHHHHhcccce
Q 025114 160 LEALA--------QRIAAVGTDSRPLLHQCESGDAYTEALN-RLSTLWEERGEAYANANAR 211 (257)
Q Consensus 160 ~~~L~--------~rl~~~g~~~~~~~h~~~~~~~~~~~~~-~v~~l~~~r~~~y~~~~~~ 211 (257)
+++|+ +.+.....+++.++||++.+..+| | ++..|.+|++...++++++
T Consensus 156 ts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~---d~~i~~l~~G~i~~~g~~~~l 213 (263)
T 2pjz_A 156 FENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYK---EYKAYFLVGNRLQGPISVSEL 213 (263)
T ss_dssp TTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCT---TSEEEEEETTEEEEEEEHHHH
T ss_pred ccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhc---CceEEEEECCEEEEecCHHHH
Confidence 99982 333332128899999988877787 7 7767777766555554443
No 37
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.94 E-value=1.6e-29 Score=215.47 Aligned_cols=153 Identities=19% Similarity=0.133 Sum_probs=107.5
Q ss_pred ceEEecceeeeeC--ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC----Cceecchh-hhhh--cCC
Q 025114 27 SVLESGNVHAPID--EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG----YSFFDCDT-LIEQ--SVD 97 (257)
Q Consensus 27 ~~l~~~~l~~~~~--~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg----~~~~d~~~-~~~~--~~~ 97 (257)
.+|+++||++.|+ ++++|+++||+|++ |++++|+||||||||||+|+|+|++. .+.+++.- ++.+ .+.
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~ 81 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIER---GQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIM 81 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEET---TCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCC
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCccc
Confidence 5799999999995 57899999999999 99999999999999999999999984 33443311 1111 112
Q ss_pred CCCHHHHHHHhCchHHHHHHHHHHHHhccc--------------CccccccChhHhHHHHHHHHhh-CCcEEEEECCHHH
Q 025114 98 GTSVAEIFKLYGEGFFREKETEVLQKLSLM--------------RQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEA 162 (257)
Q Consensus 98 ~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~--------------~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~ 162 (257)
..|+.+++...... ......++++.+++. .+.+..|||||+||+.+|+++. +|++++||||+++
T Consensus 82 ~~tv~enl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~ 160 (229)
T 2pze_A 82 PGTIKENIIFGVSY-DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGY 160 (229)
T ss_dssp SBCHHHHHHTTSCC-CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTT
T ss_pred CCCHHHHhhccCCc-ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccC
Confidence 34888888653210 011112222222221 1245799999999999998886 7999999999999
Q ss_pred HH-------HH-H-Hh--cCCCCccccCCCCC
Q 025114 163 LA-------QR-I-AA--VGTDSRPLLHQCES 183 (257)
Q Consensus 163 L~-------~r-l-~~--~g~~~~~~~h~~~~ 183 (257)
|+ .+ + .. .+.+++.++|+++.
T Consensus 161 LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~ 192 (229)
T 2pze_A 161 LDVLTEKEIFESCVCKLMANKTRILVTSKMEH 192 (229)
T ss_dssp SCHHHHHHHHHHCCCCCTTTSEEEEECCCHHH
T ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEcCChHH
Confidence 82 22 1 11 26688899999543
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.93 E-value=9.8e-28 Score=229.74 Aligned_cols=175 Identities=18% Similarity=0.199 Sum_probs=128.4
Q ss_pred ceEEecceeeeeCc--cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-------
Q 025114 27 SVLESGNVHAPIDE--AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------- 93 (257)
Q Consensus 27 ~~l~~~~l~~~~~~--~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------- 93 (257)
.+++++||++.|++ +++|+|+||++++ |++++|+||||||||||+|+|+|++ |.+.+++.++..
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~---G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~ 416 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQ---GKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLR 416 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECC---CCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHh
Confidence 46999999999974 6799999999999 9999999999999999999999997 556777654321
Q ss_pred -------h--cCCCCCHHHHHHHhC-chHHHHHHHHHHHHhcccC--------------ccccccChhHhHHHHHHHHhh
Q 025114 94 -------Q--SVDGTSVAEIFKLYG-EGFFREKETEVLQKLSLMR--------------QLVVSTGGGAVTRPINWRYMQ 149 (257)
Q Consensus 94 -------~--~~~~~~v~e~~~~~g-~~~~~~~~~~~l~~l~~~~--------------~~v~~lsgG~~qr~~~a~~l~ 149 (257)
+ .....|+.+++.... .....++..++++.+++.+ +....|||||+||+.+|+++.
T Consensus 417 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~ 496 (582)
T 3b5x_A 417 RHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALL 496 (582)
T ss_pred cCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHH
Confidence 1 012348888876533 1222334455666665432 345789999999999998876
Q ss_pred -CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccc
Q 025114 150 -KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANAN 209 (257)
Q Consensus 150 -~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~ 209 (257)
+|++++|||||++| ++++. .|.+++.++|+++.+. .| |++..|.+|++...|+++
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~---d~i~~l~~G~i~~~g~~~ 563 (582)
T 3b5x_A 497 RDAPVLILDEATSALDTESERAIQAALDELQ-KNKTVLVIAHRLSTIE-QA---DEILVVDEGEIIERGRHA 563 (582)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH-hC---CEEEEEECCEEEEECCHH
Confidence 79999999999998 23333 3788999999966543 34 676666666554444443
No 39
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.93 E-value=1.2e-27 Score=229.21 Aligned_cols=174 Identities=22% Similarity=0.222 Sum_probs=128.5
Q ss_pred ceEEecceeeeeCc--cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-------
Q 025114 27 SVLESGNVHAPIDE--AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------- 93 (257)
Q Consensus 27 ~~l~~~~l~~~~~~--~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------- 93 (257)
.+|+++||++.|++ +++|+|+||++++ |++++|+||||||||||+|+|+|++ |.+.+++.++..
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~---G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~ 416 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPA---GKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 416 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECT---TCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHH
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcC---CCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHH
Confidence 46999999999974 6899999999999 9999999999999999999999998 445666644311
Q ss_pred -------h--cCCCCCHHHHHHHhC-chHHHHHHHHHHHHhcccC--------------ccccccChhHhHHHHHHHHhh
Q 025114 94 -------Q--SVDGTSVAEIFKLYG-EGFFREKETEVLQKLSLMR--------------QLVVSTGGGAVTRPINWRYMQ 149 (257)
Q Consensus 94 -------~--~~~~~~v~e~~~~~g-~~~~~~~~~~~l~~l~~~~--------------~~v~~lsgG~~qr~~~a~~l~ 149 (257)
+ .....|+.+++.... .....++..++++.+++.+ +....|||||+||+.+|+++.
T Consensus 417 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~ 496 (582)
T 3b60_A 417 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 496 (582)
T ss_dssp HTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred hhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 1 112448999887643 1222334455566555432 346789999999999998875
Q ss_pred -CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcc
Q 025114 150 -KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANA 208 (257)
Q Consensus 150 -~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~ 208 (257)
+|++++|||||++| ++++. .|.+++.++|+++.+. .| |++..|.+|++...|++
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~---d~i~~l~~G~i~~~g~~ 562 (582)
T 3b60_A 497 RDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLSTIE-QA---DEIVVVEDGIIVERGTH 562 (582)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGGGTT-TC---SEEEEEETTEEEEEECH
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEeccHHHHH-hC---CEEEEEECCEEEEecCH
Confidence 89999999999998 34443 3788999999987654 46 77766666654433433
No 40
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.92 E-value=2.5e-27 Score=226.73 Aligned_cols=178 Identities=18% Similarity=0.187 Sum_probs=130.3
Q ss_pred ceEEecceeeeeCc--cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-------
Q 025114 27 SVLESGNVHAPIDE--AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------- 93 (257)
Q Consensus 27 ~~l~~~~l~~~~~~--~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------- 93 (257)
..++++||++.|++ +++|+|+||++++ |++++|+||||||||||+|+|+|++ |.+.+++.++..
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~---G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r 414 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEK---GETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 414 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECT---TCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECC---CCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHh
Confidence 35999999999964 5799999999999 9999999999999999999999998 445677654321
Q ss_pred -------h--cCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC--------------ccccccChhHhHHHHHHHHhh-
Q 025114 94 -------Q--SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR--------------QLVVSTGGGAVTRPINWRYMQ- 149 (257)
Q Consensus 94 -------~--~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~--------------~~v~~lsgG~~qr~~~a~~l~- 149 (257)
+ .....|+.+++.........+...++++..++.+ +....|||||+||+.+|+++.
T Consensus 415 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~ 494 (578)
T 4a82_A 415 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 494 (578)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred hheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc
Confidence 1 1124488888865432222233334444433211 345689999999999998875
Q ss_pred CCcEEEEECCHHHHH-----------HHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 150 KGISVWLDVPLEALA-----------QRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 150 ~~~vl~LDep~~~L~-----------~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
+|++++|||||++|+ +++. .+.+++.++|+++.+. .| |++..|.+|++...|++++++
T Consensus 495 ~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~-~~---d~i~~l~~G~i~~~g~~~el~ 563 (578)
T 4a82_A 495 NPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLSTIT-HA---DKIVVIENGHIVETGTHRELI 563 (578)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGTT-TC---SEEEEEETTEEEEEECHHHHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH-cC---CEEEEEECCEEEEECCHHHHH
Confidence 899999999999982 3332 3678999999988764 36 888777777766555555444
No 41
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.92 E-value=2.2e-27 Score=227.81 Aligned_cols=176 Identities=23% Similarity=0.227 Sum_probs=128.7
Q ss_pred EEecceeeeeCc---cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh--------
Q 025114 29 LESGNVHAPIDE---AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE-------- 93 (257)
Q Consensus 29 l~~~~l~~~~~~---~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~-------- 93 (257)
|+++||++.|++ +++|+|+||++++ |++++|+||||||||||+|+|+|++ |.+.+++.++.+
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~---G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~ 418 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPS---GSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 418 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECT---TCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHH
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHh
Confidence 999999999975 4699999999999 9999999999999999999999998 445666644311
Q ss_pred ------h--cCCCCCHHHHHHHhCch---HHHHHHHHHHHHhcccC--------------ccccccChhHhHHHHHHHHh
Q 025114 94 ------Q--SVDGTSVAEIFKLYGEG---FFREKETEVLQKLSLMR--------------QLVVSTGGGAVTRPINWRYM 148 (257)
Q Consensus 94 ------~--~~~~~~v~e~~~~~g~~---~~~~~~~~~l~~l~~~~--------------~~v~~lsgG~~qr~~~a~~l 148 (257)
+ .....|+.+++...... ...++..++++.+++.+ +....|||||+||+.+|+++
T Consensus 419 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral 498 (595)
T 2yl4_A 419 KIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARAL 498 (595)
T ss_dssp SEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHH
T ss_pred ceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHH
Confidence 1 11245899988764321 22344556666665421 23478999999999999887
Q ss_pred h-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 149 Q-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 149 ~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
. +|++++|||||++| ++++.+ +.+++.++|+++.+. .| |++..|.+|++...|++++++
T Consensus 499 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~---d~i~~l~~G~i~~~g~~~~l~ 569 (595)
T 2yl4_A 499 LKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLSTIK-NA---NMVAVLDQGKITEYGKHEELL 569 (595)
T ss_dssp HHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHHHH-HS---SEEEEEETTEEEEEECSCC--
T ss_pred HcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHH-cC---CEEEEEECCEEEEECCHHHHH
Confidence 5 89999999999998 333333 788999999965442 34 677666677666556655544
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.92 E-value=1.4e-27 Score=229.30 Aligned_cols=177 Identities=21% Similarity=0.171 Sum_probs=125.9
Q ss_pred ceEEecceeeeeCc-cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh--------
Q 025114 27 SVLESGNVHAPIDE-AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE-------- 93 (257)
Q Consensus 27 ~~l~~~~l~~~~~~-~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~-------- 93 (257)
..|+++||++.|++ +++|+|+||++++ |++++|+||||||||||+|+|+|++ |.+.+++.++..
T Consensus 353 ~~i~~~~v~~~y~~~~~~l~~isl~i~~---G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~ 429 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKKKPVLKDITFHIKP---GQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRS 429 (598)
T ss_dssp CCEEEEEEECCSSSSSCSCCSEEEECCT---TCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CeEEEEEEEEECCCCCccccceEEEEcC---CCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHh
Confidence 35999999999974 6799999999999 9999999999999999999999998 445676654321
Q ss_pred ------h--cCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC--------------ccccccChhHhHHHHHHHHhh-C
Q 025114 94 ------Q--SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR--------------QLVVSTGGGAVTRPINWRYMQ-K 150 (257)
Q Consensus 94 ------~--~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~--------------~~v~~lsgG~~qr~~~a~~l~-~ 150 (257)
+ .....|+.+++.........+...++++.+++.+ +....|||||+||+.+|+++. +
T Consensus 430 ~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~ 509 (598)
T 3qf4_B 430 SIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLAN 509 (598)
T ss_dssp HEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTC
T ss_pred ceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 1 1124588888865322111122233333333211 234689999999999998876 7
Q ss_pred CcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccce
Q 025114 151 GISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANAR 211 (257)
Q Consensus 151 ~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~ 211 (257)
|++++|||||++| ++++. .|.+++.++|+++.+. .| |++..|.+|++...|++++.
T Consensus 510 p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~-~~---d~i~~l~~G~i~~~g~~~~l 576 (598)
T 3qf4_B 510 PKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNTIK-NA---DLIIVLRDGEIVEMGKHDEL 576 (598)
T ss_dssp CSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTHHH-HC---SEEEEECSSSEEECSCHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH-cC---CEEEEEECCEEEEECCHHHH
Confidence 9999999999998 23333 4789999999977543 24 66666666655544444433
No 43
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.92 E-value=2.3e-27 Score=227.40 Aligned_cols=176 Identities=17% Similarity=0.161 Sum_probs=125.0
Q ss_pred ceEEecceeeeeC--ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-------
Q 025114 27 SVLESGNVHAPID--EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------- 93 (257)
Q Consensus 27 ~~l~~~~l~~~~~--~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------- 93 (257)
..|+++||++.|+ ++++|+|+||++++ |++++|+||||||||||+|+|+|++ |.+.+++.++..
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~---Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r 416 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKP---GSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLR 416 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECT---TCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHH
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHH
Confidence 3699999999994 46799999999999 9999999999999999999999998 446677655421
Q ss_pred -------h--cCCCCCHHHHHHHhCchHHHHHHHHHHHHh-----------ccc---CccccccChhHhHHHHHHHHhh-
Q 025114 94 -------Q--SVDGTSVAEIFKLYGEGFFREKETEVLQKL-----------SLM---RQLVVSTGGGAVTRPINWRYMQ- 149 (257)
Q Consensus 94 -------~--~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l-----------~~~---~~~v~~lsgG~~qr~~~a~~l~- 149 (257)
+ .....|+.+++.........+...++++.. ++. .+....|||||+||+.+|+++.
T Consensus 417 ~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~ 496 (587)
T 3qf4_A 417 GHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVK 496 (587)
T ss_dssp HHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHT
T ss_pred hheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHc
Confidence 0 112347888876533221122222233222 222 2567899999999999998876
Q ss_pred CCcEEEEECCHHHHH-----------HHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccc
Q 025114 150 KGISVWLDVPLEALA-----------QRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANA 210 (257)
Q Consensus 150 ~~~vl~LDep~~~L~-----------~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~ 210 (257)
+|++++|||||++|+ +++. .|.+++.++|+++.+. .| |++..|.+|++...|++++
T Consensus 497 ~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~---d~i~vl~~G~i~~~g~~~e 563 (587)
T 3qf4_A 497 KPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPTAL-LA---DKILVLHEGKVAGFGTHKE 563 (587)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHHHT-TS---SEEEEEETTEEEEEECHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHHHH-hC---CEEEEEECCEEEEECCHHH
Confidence 799999999999982 3332 4789999999966543 44 6666666665544444433
No 44
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.92 E-value=6e-27 Score=206.13 Aligned_cols=174 Identities=18% Similarity=0.143 Sum_probs=106.2
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchh-hhhh--cCCCC
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDT-LIEQ--SVDGT 99 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~-~~~~--~~~~~ 99 (257)
++|+++||++.+ +++|+++||+|++ |++++|+||||||||||+|+|+|++ |.+++++.- ++.+ .+...
T Consensus 39 ~~l~~~~l~~~~--~~vl~~isl~i~~---Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~ 113 (290)
T 2bbs_A 39 DSLSFSNFSLLG--TPVLKDINFKIER---GQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPG 113 (290)
T ss_dssp -----------C--CCSEEEEEEEECT---TCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSS
T ss_pred ceEEEEEEEEcC--ceEEEeeEEEEcC---CCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcc
Confidence 469999999863 6799999999999 9999999999999999999999997 334444321 1111 11234
Q ss_pred CHHHHHHHhCchHHHHHHHHHHHHhccc--------------CccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHHH
Q 025114 100 SVAEIFKLYGEGFFREKETEVLQKLSLM--------------RQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEALA 164 (257)
Q Consensus 100 ~v~e~~~~~g~~~~~~~~~~~l~~l~~~--------------~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L~ 164 (257)
|+.+++. ... .......++++.+++. .+.+..|||||+||+.+|+++. +|++++||||+++|+
T Consensus 114 tv~enl~-~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD 191 (290)
T 2bbs_A 114 TIKENII-GVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191 (290)
T ss_dssp BHHHHHH-TTC-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCC
T ss_pred cHHHHhh-Ccc-cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCC
Confidence 8888876 211 1011112223333221 1235799999999999998886 799999999999982
Q ss_pred -------HH-H-Hh--cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccce
Q 025114 165 -------QR-I-AA--VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANAR 211 (257)
Q Consensus 165 -------~r-l-~~--~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~ 211 (257)
.+ + .. .|.++++++|+++.+ .+| |++..|.+|++...|+++++
T Consensus 192 ~~~~~~i~~~ll~~~~~~~tviivtHd~~~~-~~~---d~i~~l~~G~i~~~g~~~~l 245 (290)
T 2bbs_A 192 VLTEKEIFESCVCKLMANKTRILVTSKMEHL-KKA---DKILILHEGSSYFYGTFSEL 245 (290)
T ss_dssp HHHHHHHHHHCCCCCTTTSEEEEECCCHHHH-HHS---SEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEEecCHHHH-HcC---CEEEEEECCeEEEeCCHHHH
Confidence 12 1 11 267889999996543 234 66655556655444444443
No 45
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.91 E-value=4.2e-25 Score=211.99 Aligned_cols=155 Identities=25% Similarity=0.244 Sum_probs=114.3
Q ss_pred ceEEe--------cceeeeeCcc-ccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCC----c---------
Q 025114 27 SVLES--------GNVHAPIDEA-QVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGY----S--------- 84 (257)
Q Consensus 27 ~~l~~--------~~l~~~~~~~-~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~----~--------- 84 (257)
.+|++ +||++.|++. .+|+++| +|++ |++++|+||||||||||+|+|+|++.+ .
T Consensus 82 ~~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~---Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~ 157 (607)
T 3bk7_A 82 NAISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKD---GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIR 157 (607)
T ss_dssp CCCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCT---TSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHH
T ss_pred ceEEEecCCccccCCeEEEECCCCeeeCCCC-CCCC---CCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhh
Confidence 36888 9999999886 4999999 9999 999999999999999999999998732 1
Q ss_pred eecchhhhh-------hcC---------------CCCCHHHHHHHhCchHHHHHHHHHHHHhcccC---ccccccChhHh
Q 025114 85 FFDCDTLIE-------QSV---------------DGTSVAEIFKLYGEGFFREKETEVLQKLSLMR---QLVVSTGGGAV 139 (257)
Q Consensus 85 ~~d~~~~~~-------~~~---------------~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~ 139 (257)
.+++..+.. ... ...++.+++..... +++..++++.+++.+ +.+.+|||||+
T Consensus 158 ~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~---~~~~~~~L~~lgL~~~~~~~~~~LSGGek 234 (607)
T 3bk7_A 158 AFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDE---VGKFEEVVKELELENVLDRELHQLSGGEL 234 (607)
T ss_dssp HTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCC---SSCHHHHHHHTTCTTGGGSBGGGCCHHHH
T ss_pred eeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHH---HHHHHHHHHHcCCCchhCCChhhCCHHHH
Confidence 122211100 000 00134443322110 123467889998864 78999999999
Q ss_pred HHHHHHHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhh
Q 025114 140 TRPINWRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYT 188 (257)
Q Consensus 140 qr~~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~ 188 (257)
||+++|++|. +|++++|||||++| ++++...|.+++.++||++.+..+|
T Consensus 235 QRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~a 295 (607)
T 3bk7_A 235 QRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLS 295 (607)
T ss_dssp HHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHC
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhC
Confidence 9999998886 79999999999998 4555555889999999976555555
No 46
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.91 E-value=3e-25 Score=210.39 Aligned_cols=165 Identities=20% Similarity=0.179 Sum_probs=124.7
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh--hhc---C
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI--EQS---V 96 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~--~~~---~ 96 (257)
.++++++|+++.|++. .|+.+||+|++ |++++|+||||||||||+|+|+|++ |.+.+++..+. .+. .
T Consensus 267 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~---Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~ 342 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGDF-QLVVDNGEAKE---GEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPN 342 (538)
T ss_dssp CEEEEECCEEEEETTE-EEEECCEEEET---TCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCC
T ss_pred cceEEEcceEEEECCE-EEEeccceECC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccc
Confidence 4689999999999874 58888999999 9999999999999999999999987 33444333221 111 1
Q ss_pred CCCCHHHHHHHhCchH---HHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH------
Q 025114 97 DGTSVAEIFKLYGEGF---FREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL------ 163 (257)
Q Consensus 97 ~~~~v~e~~~~~g~~~---~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L------ 163 (257)
...++.+++....... ......++++.+++.+ +.+.+|||||+||+.+|++|. +|++++|||||++|
T Consensus 343 ~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~ 422 (538)
T 3ozx_A 343 YDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERY 422 (538)
T ss_dssp CSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHH
T ss_pred cCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence 2567887766532111 1233456777777754 889999999999999998886 79999999999998
Q ss_pred -----HHHHHh-cCCCCccccCCCCCCchhhHHHHHHHHH
Q 025114 164 -----AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTL 197 (257)
Q Consensus 164 -----~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l 197 (257)
++++.. .|.++++++||++.+..+| |++..|
T Consensus 423 ~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~a---Dri~vl 459 (538)
T 3ozx_A 423 IVAKAIKRVTRERKAVTFIIDHDLSIHDYIA---DRIIVF 459 (538)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSCHHHHHHHC---SEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC---CEEEEE
Confidence 455543 4789999999987777776 666444
No 47
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.90 E-value=8.2e-25 Score=207.57 Aligned_cols=158 Identities=22% Similarity=0.225 Sum_probs=112.4
Q ss_pred EEe-cceeeeeCcc-ccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCc-------------eecchhhhh
Q 025114 29 LES-GNVHAPIDEA-QVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYS-------------FFDCDTLIE 93 (257)
Q Consensus 29 l~~-~~l~~~~~~~-~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~-------------~~d~~~~~~ 93 (257)
.++ +||+|.|+++ .+|+++| +|.+ |++++|+||||||||||+|+|+|++.+. .+++..+..
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~---Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~ 96 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKE---GMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQN 96 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCT---TSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHH
Confidence 455 6999999886 4999999 9999 9999999999999999999999987431 122211100
Q ss_pred ---h----cC---------------CCCCHHHHHHHhCchHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHh
Q 025114 94 ---Q----SV---------------DGTSVAEIFKLYGEGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYM 148 (257)
Q Consensus 94 ---~----~~---------------~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l 148 (257)
. .. ...++.+++.... .+++..++++.+++.+ +++.+|||||+||+.+|+++
T Consensus 97 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~---~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL 173 (538)
T 1yqt_A 97 YFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD---ETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAAL 173 (538)
T ss_dssp HHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC---SSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh---HHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHH
Confidence 0 00 0013333332111 0123567889998854 78999999999999999888
Q ss_pred h-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHH
Q 025114 149 Q-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLST 196 (257)
Q Consensus 149 ~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~ 196 (257)
. +|++++|||||++| ++++...|.+++.++||++.+..+| |++..
T Consensus 174 ~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~---dri~v 230 (538)
T 1yqt_A 174 LRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLS---DIIHV 230 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHC---SEEEE
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC---CEEEE
Confidence 6 79999999999998 4555556889999999976655555 55533
No 48
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.90 E-value=7.6e-25 Score=207.80 Aligned_cols=166 Identities=22% Similarity=0.184 Sum_probs=123.3
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC----Cceecch-hhhhh---cCC
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG----YSFFDCD-TLIEQ---SVD 97 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg----~~~~d~~-~~~~~---~~~ 97 (257)
.++++++|+++.|++. .|+.+||+|.+ |++++|+||||||||||+|+|+|++. .+.+... .++.+ ...
T Consensus 285 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~---Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~ 360 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGSF-RLEVEPGEIKK---GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADY 360 (538)
T ss_dssp CEEEEECCEEEEETTE-EEEECCEEEET---TCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCC
T ss_pred CeEEEEeeEEEEECCE-EEEeCccccCC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCC
Confidence 4689999999999875 69999999999 99999999999999999999999873 2222110 00111 113
Q ss_pred CCCHHHHHHHhCchH--HHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH--------
Q 025114 98 GTSVAEIFKLYGEGF--FREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL-------- 163 (257)
Q Consensus 98 ~~~v~e~~~~~g~~~--~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L-------- 163 (257)
..++.+++....... .++...++++.+++.+ +++.+||||++||+.+|+++. +|.+++|||||++|
T Consensus 361 ~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i 440 (538)
T 1yqt_A 361 EGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV 440 (538)
T ss_dssp SSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHH
T ss_pred CCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHH
Confidence 568877664320011 1233456777777753 789999999999999998887 79999999999998
Q ss_pred ---HHHHH-hcCCCCccccCCCCCCchhhHHHHHHHHHH
Q 025114 164 ---AQRIA-AVGTDSRPLLHQCESGDAYTEALNRLSTLW 198 (257)
Q Consensus 164 ---~~rl~-~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~ 198 (257)
++++. ..|.++++++||++.+..+| |++..|.
T Consensus 441 ~~~l~~l~~~~g~tvi~vsHd~~~~~~~~---drv~vl~ 476 (538)
T 1yqt_A 441 SRAIRHLMEKNEKTALVVEHDVLMIDYVS---DRLMVFE 476 (538)
T ss_dssp HHHHHHHHHHHTCEEEEECSCHHHHHHHC---SEEEEEE
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHHhC---CEEEEEe
Confidence 45554 34889999999987777776 6765553
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.90 E-value=1.2e-24 Score=208.89 Aligned_cols=165 Identities=22% Similarity=0.214 Sum_probs=123.5
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC----Cceecch-hhhhh---cCC
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG----YSFFDCD-TLIEQ---SVD 97 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg----~~~~d~~-~~~~~---~~~ 97 (257)
..+++++|+++.|++. .|+.+||+|.+ |++++|+||||||||||+|+|+|++. .+.+... .++.+ ...
T Consensus 355 ~~~l~~~~l~~~~~~~-~l~~~~~~v~~---Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~ 430 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGSF-KLEVEPGEIRK---GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEY 430 (607)
T ss_dssp CEEEEECCEEEECSSC-EEEECCEEEET---TCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCC
T ss_pred ceEEEEeceEEEecce-EEEecccccCC---CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCC
Confidence 4689999999999875 68999999999 99999999999999999999999873 2222110 00111 113
Q ss_pred CCCHHHHHHHhCchHH--HHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH--------
Q 025114 98 GTSVAEIFKLYGEGFF--REKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL-------- 163 (257)
Q Consensus 98 ~~~v~e~~~~~g~~~~--~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L-------- 163 (257)
..|+.+++.......+ .+...++++.+++.+ +.+.+|||||+||+.+|++|. +|.+++|||||++|
T Consensus 431 ~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l 510 (607)
T 3bk7_A 431 EGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV 510 (607)
T ss_dssp SSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHH
T ss_pred CCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHH
Confidence 5688776644201111 234567888888754 789999999999999998887 79999999999998
Q ss_pred ---HHHHH-hcCCCCccccCCCCCCchhhHHHHHHHHH
Q 025114 164 ---AQRIA-AVGTDSRPLLHQCESGDAYTEALNRLSTL 197 (257)
Q Consensus 164 ---~~rl~-~~g~~~~~~~h~~~~~~~~~~~~~~v~~l 197 (257)
++++. ..|.+++.++||++.+..+| |++..|
T Consensus 511 ~~~l~~l~~~~g~tvi~vsHd~~~~~~~a---drv~vl 545 (607)
T 3bk7_A 511 SRAIRHLMEKNEKTALVVEHDVLMIDYVS---DRLIVF 545 (607)
T ss_dssp HHHHHHHHHHTTCEEEEECSCHHHHHHHC---SEEEEE
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHHhC---CEEEEE
Confidence 45554 34889999999977666666 666444
No 50
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=3.8e-23 Score=171.66 Aligned_cols=186 Identities=30% Similarity=0.425 Sum_probs=142.7
Q ss_pred ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHH
Q 025114 40 EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETE 119 (257)
Q Consensus 40 ~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~ 119 (257)
...+++|+||++.+ |++++|+|++||||||+++.|++.+|..+++.|.+.+... +.++.++|...++..|+..+.+
T Consensus 11 ~~~~~~~~~~~~~~---~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~-g~~i~~~~~~~~~~~~~~~e~~ 86 (199)
T 3vaa_A 11 VDLGTENLYFQSNA---MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERF-HKTVGELFTERGEAGFRELERN 86 (199)
T ss_dssp -------------C---CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCC---CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHh-CCcHHHHHHhcChHHHHHHHHH
Confidence 35689999999999 9999999999999999999999999999999999888777 8899999998888889988888
Q ss_pred HHHHhcccCccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHHHHHHH-hcCCCCccccCCCCCCchhhHHHHHHHHH
Q 025114 120 VLQKLSLMRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEALAQRIA-AVGTDSRPLLHQCESGDAYTEALNRLSTL 197 (257)
Q Consensus 120 ~l~~l~~~~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L~~rl~-~~g~~~~~~~h~~~~~~~~~~~~~~v~~l 197 (257)
+++.+......+.++|||.......+..+. ...+++||.|.+.+.+|+. .. ..||...+.+. ..+ .+++..+
T Consensus 87 ~l~~l~~~~~~vi~~ggg~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~--~~Rp~~~~~~~-~~~---~~~i~~~ 160 (199)
T 3vaa_A 87 MLHEVAEFENVVISTGGGAPCFYDNMEFMNRTGKTVFLNVHPDVLFRRLRIAK--QQRPILQGKED-DEL---MDFIIQA 160 (199)
T ss_dssp HHHHHTTCSSEEEECCTTGGGSTTHHHHHHHHSEEEEEECCHHHHHHHHHHTG--GGCGGGTTCCH-HHH---HHHHHHH
T ss_pred HHHHHhhcCCcEEECCCcEEccHHHHHHHHcCCEEEEEECCHHHHHHHHhcCC--CCCCCcCCCCh-hhH---HHHHHHH
Confidence 888876556788999999988877776665 4789999999999999998 33 34665543111 111 2678888
Q ss_pred HHHHHHHHhcccceecchhhhhhccccCCCCCCHHHHHHHHHHHHHhhhc
Q 025114 198 WEERGEAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLK 247 (257)
Q Consensus 198 ~~~r~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 247 (257)
+..|.+.|..++.++ +++..++++++++|.+.+.++++
T Consensus 161 ~~~r~~~y~~ad~~I------------dt~~~s~ee~~~~I~~~l~~~l~ 198 (199)
T 3vaa_A 161 LEKRAPFYTQAQYIF------------NADELEDRWQIESSVQRLQELLE 198 (199)
T ss_dssp HHHHHHHHTTSSEEE------------ECCCCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhCCEEE------------ECCCCCHHHHHHHHHHHHHHHhc
Confidence 999999998866555 56778999999999999988763
No 51
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.89 E-value=4.9e-25 Score=219.43 Aligned_cols=170 Identities=16% Similarity=0.184 Sum_probs=120.2
Q ss_pred cceEEecceeeeeCc--cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC----Cceecch---------h
Q 025114 26 ASVLESGNVHAPIDE--AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG----YSFFDCD---------T 90 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~--~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg----~~~~d~~---------~ 90 (257)
.++|+++|+++.|++ +++|+|+||+|.+ |++++|+||||||||||+|+|+|++. .+++++. .
T Consensus 669 ~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~---GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~~I~yv~Q~~ 745 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTSKPQITDINFQCSL---SSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHA 745 (986)
T ss_dssp SEEEEEEEEEECCTTCSSCSEEEEEEEEET---TCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTCCEEEECHHH
T ss_pred CceEEEEeeEEEeCCCCceeeeccEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCccceEeeccch
Confidence 468999999999975 6799999999999 99999999999999999999999873 3333321 0
Q ss_pred h--hhhcCCCCCHHHHHHH-------------------------------------------------------------
Q 025114 91 L--IEQSVDGTSVAEIFKL------------------------------------------------------------- 107 (257)
Q Consensus 91 ~--~~~~~~~~~v~e~~~~------------------------------------------------------------- 107 (257)
. ++... ..++.+.+..
T Consensus 746 ~~~l~~~~-~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ 824 (986)
T 2iw3_A 746 FAHIESHL-DKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLG 824 (986)
T ss_dssp HHHGGGCT-TSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred hhhhhccc-ccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhh
Confidence 0 00000 1111111100
Q ss_pred --------------------------------------------hC--chHHHHHHHHHHHHhccc-----CccccccCh
Q 025114 108 --------------------------------------------YG--EGFFREKETEVLQKLSLM-----RQLVVSTGG 136 (257)
Q Consensus 108 --------------------------------------------~g--~~~~~~~~~~~l~~l~~~-----~~~v~~lsg 136 (257)
.+ ....+....++|+.+++. ++++..|||
T Consensus 825 ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSG 904 (986)
T 2iw3_A 825 ENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSG 904 (986)
T ss_dssp ESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCH
T ss_pred hhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCH
Confidence 00 000123456788888874 367899999
Q ss_pred hHhHHHHHHHHhh-CCcEEEEECCHHHH--------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHH
Q 025114 137 GAVTRPINWRYMQ-KGISVWLDVPLEAL--------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERG 202 (257)
Q Consensus 137 G~~qr~~~a~~l~-~~~vl~LDep~~~L--------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~ 202 (257)
||+||+.+++++. +|.+++|||||++| .+.++..+.++++++||++.+..+| |++..|.+|++
T Consensus 905 GQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~---DrVivL~~G~I 976 (986)
T 2iw3_A 905 GQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLT---EEVWAVKDGRM 976 (986)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTC---CEEECCBTTBC
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhC---CEEEEEECCEE
Confidence 9999999998876 79999999999998 3444445678999999977666666 66655555543
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.89 E-value=5.2e-25 Score=211.19 Aligned_cols=180 Identities=15% Similarity=0.105 Sum_probs=125.7
Q ss_pred cceeeeeCc-cccccccceEecC--CCCCcEEEEEcCCCChHHHHHHHHHhhhCCce---ecchh--hhhh---cCCCCC
Q 025114 32 GNVHAPIDE-AQVLKNKSQEIEP--YLSGRCIYLVGMMGSGKTTVGKILSGVLGYSF---FDCDT--LIEQ---SVDGTS 100 (257)
Q Consensus 32 ~~l~~~~~~-~~~l~~isl~i~~--~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~---~d~~~--~~~~---~~~~~~ 100 (257)
.++++.|.+ ..+++++||++.+ +..||+++|+||||||||||+|+|+|++.+.- +.... +..+ .....+
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~t 429 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGT 429 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSB
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCcc
Confidence 678888976 4689999999998 01128899999999999999999999984321 00000 0011 112446
Q ss_pred HHHHHHHhCc--hHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-----------
Q 025114 101 VAEIFKLYGE--GFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL----------- 163 (257)
Q Consensus 101 v~e~~~~~g~--~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L----------- 163 (257)
+.+++...-. ........++++.+++.+ +.+.+|||||+||+.+|++|. +|++++|||||++|
T Consensus 430 v~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~l 509 (608)
T 3j16_B 430 VRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKV 509 (608)
T ss_dssp HHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 7776543211 111234557788888754 889999999999999999887 79999999999988
Q ss_pred HHHHH-hcCCCCccccCCCCCCchhhHHHHHHHHHHH--HHHHHHhcccceecc
Q 025114 164 AQRIA-AVGTDSRPLLHQCESGDAYTEALNRLSTLWE--ERGEAYANANARVSL 214 (257)
Q Consensus 164 ~~rl~-~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~--~r~~~y~~~~~~~~~ 214 (257)
++++. ..|.++++++||++.+..+| |++..|.. |+....|+|+.+++.
T Consensus 510 l~~l~~~~g~tviivtHdl~~~~~~a---Drvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 510 IRRFILHNKKTAFIVEHDFIMATYLA---DKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp HHHHHHHHTCEEEEECSCHHHHHHHC---SEEEECEEETTTEEECCCCEEHHHH
T ss_pred HHHHHHhCCCEEEEEeCCHHHHHHhC---CEEEEEeCCCCeEEecCChHHHhhh
Confidence 35554 34899999999987777776 77655543 444445555555544
No 53
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.89 E-value=2.2e-24 Score=214.82 Aligned_cols=168 Identities=17% Similarity=0.172 Sum_probs=123.3
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHh-hh-CCceecc--hhhhhh----cCCCC
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSG-VL-GYSFFDC--DTLIEQ----SVDGT 99 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag-~l-g~~~~d~--~~~~~~----~~~~~ 99 (257)
.|...|+++.|+++.+|+++||+|.+ |++++|+||||||||||+|+|+| .+ |...... ..+..+ ....+
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~---Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~l 511 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKR---ARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDT 511 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEET---TCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTS
T ss_pred eeEEeeEEEEECCEEeEecceEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCC
Confidence 46667999999999999999999999 99999999999999999999995 21 1110000 001111 12356
Q ss_pred CHHHHHHHhCchHHHHHHHHHHHHhccc----CccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH--------HHH
Q 025114 100 SVAEIFKLYGEGFFREKETEVLQKLSLM----RQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL--------AQR 166 (257)
Q Consensus 100 ~v~e~~~~~g~~~~~~~~~~~l~~l~~~----~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L--------~~r 166 (257)
++.+++....... +++..++++.+++. ++++.+|||||+||+.+++++. +|++++|||||++| .+-
T Consensus 512 tv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~ 590 (986)
T 2iw3_A 512 SVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNY 590 (986)
T ss_dssp BHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred cHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHH
Confidence 7777765310011 45567889999984 3789999999999999998876 79999999999998 233
Q ss_pred HHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHH
Q 025114 167 IAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERG 202 (257)
Q Consensus 167 l~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~ 202 (257)
+...|.+++.++||++.+..+| |++..|.+|++
T Consensus 591 L~~~g~tvIivSHdl~~l~~~a---drii~L~~G~i 623 (986)
T 2iw3_A 591 LNTCGITSITISHDSVFLDNVC---EYIINYEGLKL 623 (986)
T ss_dssp HHHSCSEEEEECSCHHHHHHHC---SEEEEEETTEE
T ss_pred HHhCCCEEEEEECCHHHHHHhC---CEEEEEECCee
Confidence 3335789999999977666666 66655555554
No 54
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.88 E-value=1.1e-24 Score=224.52 Aligned_cols=177 Identities=20% Similarity=0.217 Sum_probs=127.1
Q ss_pred eEEecceeeeeCc---cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-------
Q 025114 28 VLESGNVHAPIDE---AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------- 93 (257)
Q Consensus 28 ~l~~~~l~~~~~~---~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------- 93 (257)
.|+++||+|.|++ .++|+|+||+|++ |++++|+||||||||||+++|+|++ |.+.+|+.++..
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~---G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r 463 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKS---GQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLR 463 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEECT---TCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHH
Confidence 5999999999974 4699999999999 9999999999999999999999998 456777754321
Q ss_pred -------h--cCCCCCHHHHHHHhCchHHHHHHHHHH---------HHhc--cc---CccccccChhHhHHHHHHHHhh-
Q 025114 94 -------Q--SVDGTSVAEIFKLYGEGFFREKETEVL---------QKLS--LM---RQLVVSTGGGAVTRPINWRYMQ- 149 (257)
Q Consensus 94 -------~--~~~~~~v~e~~~~~g~~~~~~~~~~~l---------~~l~--~~---~~~v~~lsgG~~qr~~~a~~l~- 149 (257)
+ .....|+.+++....+....+...+++ +.+. .. ......|||||+||+++|+++.
T Consensus 464 ~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~ 543 (1284)
T 3g5u_A 464 EIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVR 543 (1284)
T ss_dssp HHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHH
T ss_pred hheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhc
Confidence 1 112458999887654322122222222 2221 11 1456789999999999998875
Q ss_pred CCcEEEEECCHHHHH-----------HHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 150 KGISVWLDVPLEALA-----------QRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 150 ~~~vl~LDep~~~L~-----------~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
+|++++|||||++|+ +++ ..|.+++.++|+++.+.. | |++..|.+|++...|++++.+
T Consensus 544 ~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~t~i~itH~l~~i~~-~---d~i~vl~~G~i~~~g~~~~l~ 612 (1284)
T 3g5u_A 544 NPKILLLDEATSALDTESEAVVQAALDKA-REGRTTIVIAHRLSTVRN-A---DVIAGFDGGVIVEQGNHDELM 612 (1284)
T ss_dssp CCSEEEEESTTCSSCHHHHHHHHHHHHHH-HTTSEEEEECSCHHHHTT-C---SEEEECSSSCCCCEECHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHc-C---CEEEEEECCEEEEECCHHHHH
Confidence 899999999999882 222 247899999999765543 4 666666666666555554443
No 55
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.87 E-value=1.9e-24 Score=223.21 Aligned_cols=179 Identities=21% Similarity=0.181 Sum_probs=135.9
Q ss_pred eEEecceeeeeCc---cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-------
Q 025114 28 VLESGNVHAPIDE---AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------- 93 (257)
Q Consensus 28 ~l~~~~l~~~~~~---~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------- 93 (257)
.|+++||+++|.+ .+||+|+||+|++ |+.++|+|++|||||||+++|.+++ |.+.+|+.++..
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~---Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR 1152 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEP---GQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTR 1152 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECT---TCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHH
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECC---CCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHH
Confidence 5999999999954 4699999999999 9999999999999999999999998 567888866521
Q ss_pred -------h--cCCCCCHHHHHHHhC--chHHHHHHHHHHHHhcccC--------------ccccccChhHhHHHHHHHHh
Q 025114 94 -------Q--SVDGTSVAEIFKLYG--EGFFREKETEVLQKLSLMR--------------QLVVSTGGGAVTRPINWRYM 148 (257)
Q Consensus 94 -------~--~~~~~~v~e~~~~~g--~~~~~~~~~~~l~~l~~~~--------------~~v~~lsgG~~qr~~~a~~l 148 (257)
+ ..+.-|+.+++...- .....+...++++..++.+ ..-..|||||+||.++||++
T Consensus 1153 ~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAl 1232 (1321)
T 4f4c_A 1153 SQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARAL 1232 (1321)
T ss_dssp TTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHH
T ss_pred hheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHH
Confidence 1 113457888875421 1222344455666555421 23357999999999999877
Q ss_pred h-CCcEEEEECCHHHHH--------HHHHh--cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceec
Q 025114 149 Q-KGISVWLDVPLEALA--------QRIAA--VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVS 213 (257)
Q Consensus 149 ~-~~~vl~LDep~~~L~--------~rl~~--~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~ 213 (257)
. +|++++|||||++|+ +.+.+ .+.|++.+.|.++.+... |+|..|.+||+..+|++++.+.
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~a----D~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNA----DCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTC----SEEEEESSSSEEEEECHHHHHH
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhC----CEEEEEECCEEEEECCHHHHHh
Confidence 5 799999999999883 33332 378999999998876553 8888888998888888776663
No 56
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.87 E-value=2.5e-24 Score=221.83 Aligned_cols=179 Identities=18% Similarity=0.201 Sum_probs=129.1
Q ss_pred ceEEecceeeeeCc---cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh------
Q 025114 27 SVLESGNVHAPIDE---AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------ 93 (257)
Q Consensus 27 ~~l~~~~l~~~~~~---~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------ 93 (257)
..++++||++.|++ .++|+|+||+|++ ||+++|+||||||||||+++|+|++ |.+.+|+.++..
T Consensus 1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~---Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~ 1105 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKK---GQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWL 1105 (1284)
T ss_dssp CCEEEEEEEBCCSCGGGCCSBSSCCEEECS---SSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHH
T ss_pred CcEEEEEEEEECCCCCCCeeecceeEEEcC---CCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHH
Confidence 35999999999975 3699999999999 9999999999999999999999988 445666654311
Q ss_pred --------h--cCCCCCHHHHHHHhCch--HHHHHHHHHHHHhcccC--------------ccccccChhHhHHHHHHHH
Q 025114 94 --------Q--SVDGTSVAEIFKLYGEG--FFREKETEVLQKLSLMR--------------QLVVSTGGGAVTRPINWRY 147 (257)
Q Consensus 94 --------~--~~~~~~v~e~~~~~g~~--~~~~~~~~~l~~l~~~~--------------~~v~~lsgG~~qr~~~a~~ 147 (257)
+ .....|+.+++...... ...+...++++..++.+ .....|||||+||+.+|++
T Consensus 1106 r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARa 1185 (1284)
T 3g5u_A 1106 RAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARA 1185 (1284)
T ss_dssp TTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHH
T ss_pred HhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHH
Confidence 1 11355788887543211 11122223333332211 2346899999999999988
Q ss_pred hh-CCcEEEEECCHHHHH--------HHHH--hcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccccee
Q 025114 148 MQ-KGISVWLDVPLEALA--------QRIA--AVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARV 212 (257)
Q Consensus 148 l~-~~~vl~LDep~~~L~--------~rl~--~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~ 212 (257)
+. +|++++|||||++|+ +.+. ..|.+++.++|+++.+.. | |++..|.+|++..+|++++.+
T Consensus 1186 l~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~-~---dri~vl~~G~i~~~g~~~~l~ 1257 (1284)
T 3g5u_A 1186 LVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQN-A---DLIVVIQNGKVKEHGTHQQLL 1257 (1284)
T ss_dssp HHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGS-C---SEEEEEETBEEEEEECHHHHH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHc-C---CEEEEEECCEEEEECCHHHHH
Confidence 75 899999999999882 1222 247899999999887643 6 888888888776666665544
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.87 E-value=4.2e-23 Score=198.01 Aligned_cols=158 Identities=23% Similarity=0.227 Sum_probs=108.3
Q ss_pred cceeeeeCccc-cccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCC----c-----------eecchhhhh--
Q 025114 32 GNVHAPIDEAQ-VLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGY----S-----------FFDCDTLIE-- 93 (257)
Q Consensus 32 ~~l~~~~~~~~-~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~----~-----------~~d~~~~~~-- 93 (257)
+|++++|+... .|++++ ++++ |++++|+||||||||||+|+|+|++.+ . ++.+..+..
T Consensus 81 ~~~~~~Y~~~~~~l~~l~-~~~~---Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~ 156 (608)
T 3j16_B 81 AHVTHRYSANSFKLHRLP-TPRP---GQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYF 156 (608)
T ss_dssp TTEEEECSTTSCEEECCC-CCCT---TSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHH
T ss_pred CCeEEEECCCceeecCCC-CCCC---CCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhh
Confidence 46788897643 567666 5888 999999999999999999999998833 2 111111100
Q ss_pred -----hcC---------C-------C--CCHHHHHHHhCchHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHH
Q 025114 94 -----QSV---------D-------G--TSVAEIFKLYGEGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRY 147 (257)
Q Consensus 94 -----~~~---------~-------~--~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~ 147 (257)
... . + .++.+++..... ..+++..++++.+++.+ +.+..|||||+||+++|++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~-~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAra 235 (608)
T 3j16_B 157 TKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRME-KSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMS 235 (608)
T ss_dssp HHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCC-SCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHH
T ss_pred hHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhh-hHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHH
Confidence 000 0 0 011122211111 11245567888888864 8899999999999999988
Q ss_pred hh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHH
Q 025114 148 MQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTL 197 (257)
Q Consensus 148 l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l 197 (257)
+. +|++++|||||++| ++++...|.+++.++||++.+..+| |++..|
T Consensus 236 L~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~---drv~vl 294 (608)
T 3j16_B 236 CVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLS---DFVCII 294 (608)
T ss_dssp HHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHC---SEEEEE
T ss_pred HHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC---CEEEEE
Confidence 86 79999999999998 3455556889999999977666555 555433
No 58
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.87 E-value=6.8e-24 Score=219.08 Aligned_cols=177 Identities=19% Similarity=0.202 Sum_probs=129.0
Q ss_pred eEEecceeeeeC---ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-------
Q 025114 28 VLESGNVHAPID---EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE------- 93 (257)
Q Consensus 28 ~l~~~~l~~~~~---~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~------- 93 (257)
-|+++||+|.|+ ++++|+|+||+|++ |+.++|+||+|||||||+++|.|++ |.+.+|+.++-+
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~---G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr 491 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNA---GQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLR 491 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECT---TCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHH
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecC---CcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHh
Confidence 599999999996 36799999999999 9999999999999999999999998 456777754311
Q ss_pred -------h--cCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC--------------ccccccChhHhHHHHHHHHhh-
Q 025114 94 -------Q--SVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR--------------QLVVSTGGGAVTRPINWRYMQ- 149 (257)
Q Consensus 94 -------~--~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~--------------~~v~~lsgG~~qr~~~a~~l~- 149 (257)
+ ....-|+.+++....+....++..++++..++.+ ..-..|||||+||.++||++.
T Consensus 492 ~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~ 571 (1321)
T 4f4c_A 492 KNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVR 571 (1321)
T ss_dssp HHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTT
T ss_pred hcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHcc
Confidence 1 1235689998876443333344445555443211 345689999999999998875
Q ss_pred CCcEEEEECCHHHHH--------HHHHh--cCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccce
Q 025114 150 KGISVWLDVPLEALA--------QRIAA--VGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANAR 211 (257)
Q Consensus 150 ~~~vl~LDep~~~L~--------~rl~~--~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~ 211 (257)
+|++++|||||++|+ +.+.. .|.|++.++|.+..+. .| |+|..|.+|++...|+.++.
T Consensus 572 ~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~-~a---D~Iivl~~G~ive~Gth~eL 639 (1321)
T 4f4c_A 572 NPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIR-NA---DLIISCKNGQVVEVGDHRAL 639 (1321)
T ss_dssp CCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTT-TC---SEEEEEETTEEEEEECHHHH
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHH-hC---CEEEEeeCCeeeccCCHHHH
Confidence 799999999999982 22221 4789999999977543 33 66666666665555554433
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.86 E-value=5.1e-24 Score=207.02 Aligned_cols=165 Identities=21% Similarity=0.197 Sum_probs=98.4
Q ss_pred ccccccccceEecCCCCCcEEEEEcCCCChHHHHH---------------------HHHHhhhCC-----------ceec
Q 025114 40 EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVG---------------------KILSGVLGY-----------SFFD 87 (257)
Q Consensus 40 ~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLl---------------------k~Lag~lg~-----------~~~d 87 (257)
...+|+||||+|++ |++++|+||||||||||+ ++++++..+ ..++
T Consensus 30 ~~~~L~~vsl~i~~---Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~ 106 (670)
T 3ux8_A 30 RAHNLKNIDVEIPR---GKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISID 106 (670)
T ss_dssp CSTTCCSEEEEEET---TSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEES
T ss_pred CccceeccEEEECC---CCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEec
Confidence 46799999999999 999999999999999997 666665421 1122
Q ss_pred chhhhh----------h----------------------cCCCCCHHHHHHHhCch---H-----HHH------HHHHHH
Q 025114 88 CDTLIE----------Q----------------------SVDGTSVAEIFKLYGEG---F-----FRE------KETEVL 121 (257)
Q Consensus 88 ~~~~~~----------~----------------------~~~~~~v~e~~~~~g~~---~-----~~~------~~~~~l 121 (257)
+..... + .+..+++.+.+...... . .+. ...+++
T Consensus 107 ~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (670)
T 3ux8_A 107 QKTTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFL 186 (670)
T ss_dssp SCC-----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHH
T ss_pred CchhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHH
Confidence 211100 0 00122344433221100 0 000 011246
Q ss_pred HHhccc----CccccccChhHhHHHHHHHHhh-CCc--EEEEECCHHHH-----------HHHHHhcCCCCccccCCCCC
Q 025114 122 QKLSLM----RQLVVSTGGGAVTRPINWRYMQ-KGI--SVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCES 183 (257)
Q Consensus 122 ~~l~~~----~~~v~~lsgG~~qr~~~a~~l~-~~~--vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~ 183 (257)
+.+++. ++++.+|||||+||+.+|++|. +|+ +++|||||++| +++++..|.++++++||++.
T Consensus 187 ~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~ 266 (670)
T 3ux8_A 187 QNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDT 266 (670)
T ss_dssp HHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHH
T ss_pred HHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 777764 3789999999999999998886 677 99999999998 46666668999999999654
Q ss_pred CchhhHHHHHHHHH------HHHHHHHHhcccce
Q 025114 184 GDAYTEALNRLSTL------WEERGEAYANANAR 211 (257)
Q Consensus 184 ~~~~~~~~~~v~~l------~~~r~~~y~~~~~~ 211 (257)
+ .+| |++..| .+|++...|+++++
T Consensus 267 ~-~~~---d~ii~l~~g~~~~~G~i~~~g~~~~~ 296 (670)
T 3ux8_A 267 M-LAA---DYLIDIGPGAGIHGGEVVAAGTPEEV 296 (670)
T ss_dssp H-HHC---SEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred H-hhC---CEEEEecccccccCCEEEEecCHHHH
Confidence 3 234 565544 45555444444433
No 60
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.85 E-value=7.2e-23 Score=198.96 Aligned_cols=109 Identities=16% Similarity=0.139 Sum_probs=76.7
Q ss_pred CCHHHHHHHhCchHHHHHHHHHHHHhccc----CccccccChhHhHHHHHHHHhh-CC---cEEEEECCHHHH-------
Q 025114 99 TSVAEIFKLYGEGFFREKETEVLQKLSLM----RQLVVSTGGGAVTRPINWRYMQ-KG---ISVWLDVPLEAL------- 163 (257)
Q Consensus 99 ~~v~e~~~~~g~~~~~~~~~~~l~~l~~~----~~~v~~lsgG~~qr~~~a~~l~-~~---~vl~LDep~~~L------- 163 (257)
+++.+++..........+..+.+..+++. ++++.+|||||+||+.+|++|. +| .+++|||||++|
T Consensus 505 ltv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~ 584 (670)
T 3ux8_A 505 MTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIAR 584 (670)
T ss_dssp SBHHHHHHHTTTCHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHH
T ss_pred CCHHHHHHHHHHhhhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHH
Confidence 34445444433222223345667777774 3789999999999999998885 44 699999999998
Q ss_pred ----HHHHHhcCCCCccccCCCCCCchhhHHHHHHHHH------HHHHHHHHhcccce
Q 025114 164 ----AQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTL------WEERGEAYANANAR 211 (257)
Q Consensus 164 ----~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l------~~~r~~~y~~~~~~ 211 (257)
+++++..|.++++++||++.+ .+| |++..| .+|++...|+++++
T Consensus 585 i~~~l~~l~~~g~tvi~vtHd~~~~-~~~---d~i~~l~~~~g~~~G~i~~~g~~~~~ 638 (670)
T 3ux8_A 585 LLDVLHRLVDNGDTVLVIEHNLDVI-KTA---DYIIDLGPEGGDRGGQIVAVGTPEEV 638 (670)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHH-TTC---SEEEEEESSSGGGCCEEEEEECHHHH
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHH-HhC---CEEEEecCCcCCCCCEEEEecCHHHH
Confidence 566666689999999997654 346 777666 56766666665544
No 61
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.84 E-value=1.2e-21 Score=185.66 Aligned_cols=155 Identities=21% Similarity=0.158 Sum_probs=103.8
Q ss_pred cceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCC----c-----------eecchhhhh---
Q 025114 32 GNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGY----S-----------FFDCDTLIE--- 93 (257)
Q Consensus 32 ~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~----~-----------~~d~~~~~~--- 93 (257)
++++.+||.. -++-..|.+.+ +|++++|+||||||||||+|+|+|++.+ + .+++..+..
T Consensus 3 ~~~~~~~~~~-~f~l~~l~~~~--~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~ 79 (538)
T 3ozx_A 3 GEVIHRYKVN-GFKLFGLPTPK--NNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK 79 (538)
T ss_dssp CCEEEESSTT-SCEEECCCCCC--TTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred CCCceecCCC-ceeecCCCCCC--CCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHH
Confidence 3577888753 24444554442 3999999999999999999999998733 2 122211100
Q ss_pred h----c---------------CCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-C
Q 025114 94 Q----S---------------VDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-K 150 (257)
Q Consensus 94 ~----~---------------~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~ 150 (257)
. . ....++.+++.... .+++..++++.+++.. +.+..|||||+||+++|+++. +
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~ 156 (538)
T 3ozx_A 80 ELYSNELKIVHKIQYVEYASKFLKGTVNEILTKID---ERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLRE 156 (538)
T ss_dssp HHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC---CSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSC
T ss_pred HHhhcccchhhccchhhhhhhhccCcHHHHhhcch---hHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 0 0 00012222221111 0123457788888754 889999999999999998886 7
Q ss_pred CcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhhHHHHHHHH
Q 025114 151 GISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYTEALNRLST 196 (257)
Q Consensus 151 ~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~ 196 (257)
|++++|||||++| ++++++ |.+++.++||++.+..+| |++..
T Consensus 157 p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~~~~~~~---d~i~v 209 (538)
T 3ozx_A 157 ADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLIVLDYLT---DLIHI 209 (538)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHHHHHHHC---SEEEE
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChHHHHhhC---CEEEE
Confidence 9999999999988 355544 889999999976665555 55533
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.81 E-value=4.8e-22 Score=196.04 Aligned_cols=78 Identities=18% Similarity=0.228 Sum_probs=62.9
Q ss_pred HHHHHHHHhcccC----ccccccChhHhHHHHHHHHhh-C---CcEEEEECCHHHH-----------HHHHHhcCCCCcc
Q 025114 116 KETEVLQKLSLMR----QLVVSTGGGAVTRPINWRYMQ-K---GISVWLDVPLEAL-----------AQRIAAVGTDSRP 176 (257)
Q Consensus 116 ~~~~~l~~l~~~~----~~v~~lsgG~~qr~~~a~~l~-~---~~vl~LDep~~~L-----------~~rl~~~g~~~~~ 176 (257)
+..++++.+++.. +.+..||||++||+.+|++|. + |.+++|||||++| ++++...|.++++
T Consensus 709 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIv 788 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIA 788 (842)
T ss_dssp HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 3457888888853 789999999999999998886 3 6999999999998 4666667899999
Q ss_pred ccCCCCCCchhhHHHHHHHHH
Q 025114 177 LLHQCESGDAYTEALNRLSTL 197 (257)
Q Consensus 177 ~~h~~~~~~~~~~~~~~v~~l 197 (257)
++||++.+ ..| |++..|
T Consensus 789 isHdl~~i-~~a---Drii~L 805 (842)
T 2vf7_A 789 VEHKMQVV-AAS---DWVLDI 805 (842)
T ss_dssp ECCCHHHH-TTC---SEEEEE
T ss_pred EcCCHHHH-HhC---CEEEEE
Confidence 99997655 445 666555
No 63
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.79 E-value=3.8e-20 Score=150.29 Aligned_cols=116 Identities=12% Similarity=0.004 Sum_probs=69.2
Q ss_pred ccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHHHHHHhc
Q 025114 46 NKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLS 125 (257)
Q Consensus 46 ~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~ 125 (257)
||||++++ |++++|+||||||||||+|++.+ +...+..+.+..... ...-...+............ ......+
T Consensus 1 ~vsl~i~~---gei~~l~G~nGsGKSTl~~~~~~--~~~~~~~d~~~g~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~g 73 (171)
T 4gp7_A 1 SMKLTIPE---LSLVVLIGSSGSGKSTFAKKHFK--PTEVISSDFCRGLMS-DDENDQTVTGAAFDVLHYIV-SKRLQLG 73 (171)
T ss_dssp CEEEEEES---SEEEEEECCTTSCHHHHHHHHSC--GGGEEEHHHHHHHHC-SSTTCGGGHHHHHHHHHHHH-HHHHHTT
T ss_pred CccccCCC---CEEEEEECCCCCCHHHHHHHHcc--CCeEEccHHHHHHhc-CcccchhhHHHHHHHHHHHH-HHHHhCC
Confidence 68999999 99999999999999999997542 222333332211111 00000000000000000111 1112223
Q ss_pred ccC--ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHHHHHHH
Q 025114 126 LMR--QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEALAQRIA 168 (257)
Q Consensus 126 ~~~--~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L~~rl~ 168 (257)
... ......|||++|++.+|+++. +|.+++||||+++|+.+.+
T Consensus 74 ~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~ 119 (171)
T 4gp7_A 74 KLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNK 119 (171)
T ss_dssp CCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHh
Confidence 221 334456999999999998886 6999999999999987744
No 64
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.79 E-value=7.3e-21 Score=189.03 Aligned_cols=93 Identities=17% Similarity=0.140 Sum_probs=68.1
Q ss_pred HHHHHHHHHhcccC----ccccccChhHhHHHHHHHHhh-C---CcEEEEECCHHHH-----------HHHHHhcCCCCc
Q 025114 115 EKETEVLQKLSLMR----QLVVSTGGGAVTRPINWRYMQ-K---GISVWLDVPLEAL-----------AQRIAAVGTDSR 175 (257)
Q Consensus 115 ~~~~~~l~~l~~~~----~~v~~lsgG~~qr~~~a~~l~-~---~~vl~LDep~~~L-----------~~rl~~~g~~~~ 175 (257)
.+..++|+.+++.. +++..|||||+||+.+|++|. + |.+++|||||++| ++++...|.+++
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVI 862 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVI 862 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 34557788888853 788999999999999998885 3 4799999999998 566666789999
Q ss_pred cccCCCCCCchhhHHHHHHHHH------HHHHHHHHhcccce
Q 025114 176 PLLHQCESGDAYTEALNRLSTL------WEERGEAYANANAR 211 (257)
Q Consensus 176 ~~~h~~~~~~~~~~~~~~v~~l------~~~r~~~y~~~~~~ 211 (257)
+++||++.+. .| |++..| ..|++...|+++++
T Consensus 863 vI~HdL~~i~-~A---DrIivLgp~gg~~~G~Iv~~Gtpeel 900 (916)
T 3pih_A 863 VIEHNLDVIK-NA---DHIIDLGPEGGKEGGYIVATGTPEEI 900 (916)
T ss_dssp EECCCHHHHT-TC---SEEEEEESSSGGGCCEEEEEESHHHH
T ss_pred EEeCCHHHHH-hC---CEEEEecCCCCCCCCEEEEEcCHHHH
Confidence 9999965432 24 565555 44544444444433
No 65
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.78 E-value=4.3e-18 Score=138.84 Aligned_cols=171 Identities=30% Similarity=0.524 Sum_probs=134.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccCccccccCh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGG 136 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~~lsg 136 (257)
+.+++|+|++||||||+++.|+..+|..+++.|.+.+... +.++.+++...|+..|+..+.+++..+......+..++|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~-g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~gg 83 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRT-GADIAWIFEMEGEAGFRRREREMIEALCKLDNIILATGG 83 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEECCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHc-CCChhhHHHHhCHHHHHHHHHHHHHHHHhcCCcEEecCC
Confidence 6789999999999999999999999999999999988776 889999999888888998888888877655677888999
Q ss_pred hHhHHHHHHHHhh-CCcEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhc-ccceecc
Q 025114 137 GAVTRPINWRYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN-ANARVSL 214 (257)
Q Consensus 137 G~~qr~~~a~~l~-~~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~-~~~~~~~ 214 (257)
|..........+. .+.+++||.|.+.+.+|+.......+|...+ . +..+.+..++..|.+.|.. ++.++
T Consensus 84 ~~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~~~~rp~~~~----~---~~~~~l~~~~~~r~~~y~~~ad~~I-- 154 (185)
T 3trf_A 84 GVVLDEKNRQQISETGVVIYLTASIDTQLKRIGQKGEMRRPLFIK----N---NSKEKLQQLNEIRKPLYQAMADLVY-- 154 (185)
T ss_dssp TGGGSHHHHHHHHHHEEEEEEECCHHHHHHHHHCCTTCSSCCCCC----H---HHHHHHHHHHHHHHHHHHHHCSEEE--
T ss_pred ceecCHHHHHHHHhCCcEEEEECCHHHHHHHHhhcCCCCCCCCCC----C---CHHHHHHHHHHHHHHHHhhcCCEEE--
Confidence 9887777666665 4689999999999999993222233554432 1 1126677888899998876 55555
Q ss_pred hhhhhhccccCCCCCCHHHHHHHHHHHHHhhhc
Q 025114 215 ENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLK 247 (257)
Q Consensus 215 ~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 247 (257)
+++..++++++++|.+.+...+.
T Consensus 155 ----------dt~~~~~~e~~~~I~~~l~~~~~ 177 (185)
T 3trf_A 155 ----------PTDDLNPRQLATQILVDIKQTYS 177 (185)
T ss_dssp ----------ECTTCCHHHHHHHHHHHSCC---
T ss_pred ----------ECCCCCHHHHHHHHHHHHHHHhh
Confidence 56778999999999888876553
No 66
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.77 E-value=1.4e-20 Score=186.50 Aligned_cols=90 Identities=18% Similarity=0.144 Sum_probs=66.8
Q ss_pred HHHHHHHhcccC----ccccccChhHhHHHHHHHHhh-C---CcEEEEECCHHHH-----------HHHHHhcCCCCccc
Q 025114 117 ETEVLQKLSLMR----QLVVSTGGGAVTRPINWRYMQ-K---GISVWLDVPLEAL-----------AQRIAAVGTDSRPL 177 (257)
Q Consensus 117 ~~~~l~~l~~~~----~~v~~lsgG~~qr~~~a~~l~-~---~~vl~LDep~~~L-----------~~rl~~~g~~~~~~ 177 (257)
..++++.+++.. +.+..||||++||+.+|++|. + |.+++|||||++| ++++...|.+++++
T Consensus 825 ~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvi 904 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVI 904 (972)
T ss_dssp HHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 356788888854 789999999999999998886 3 4899999999998 46666678999999
Q ss_pred cCCCCCCchhhHHHHHHHHH------HHHHHHHHhcccc
Q 025114 178 LHQCESGDAYTEALNRLSTL------WEERGEAYANANA 210 (257)
Q Consensus 178 ~h~~~~~~~~~~~~~~v~~l------~~~r~~~y~~~~~ 210 (257)
+||++.+ .+| |++..| .+|++...+++++
T Consensus 905 sHdl~~i-~~a---DrIivL~p~gG~~~G~Iv~~g~~~e 939 (972)
T 2r6f_A 905 EHNLDVI-KTA---DYIIDLGPEGGDRGGQIVAVGTPEE 939 (972)
T ss_dssp CCCHHHH-TTC---SEEEEECSSSTTSCCSEEEEESHHH
T ss_pred cCCHHHH-HhC---CEEEEEcCCCCCCCCEEEEecCHHH
Confidence 9996653 345 666555 3455444444433
No 67
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.76 E-value=2.6e-20 Score=185.09 Aligned_cols=76 Identities=18% Similarity=0.160 Sum_probs=59.7
Q ss_pred HHHHHHhcccC----ccccccChhHhHHHHHHHHhh-C---CcEEEEECCHHHH-----------HHHHHhcCCCCcccc
Q 025114 118 TEVLQKLSLMR----QLVVSTGGGAVTRPINWRYMQ-K---GISVWLDVPLEAL-----------AQRIAAVGTDSRPLL 178 (257)
Q Consensus 118 ~~~l~~l~~~~----~~v~~lsgG~~qr~~~a~~l~-~---~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~ 178 (257)
.++++.+++.. +.+..||||++||+.+|++|. + |.+++|||||++| +++++..|.++++++
T Consensus 844 ~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvis 923 (993)
T 2ygr_A 844 LRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923 (993)
T ss_dssp HHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 46788888753 789999999999999998886 3 4899999999998 456666789999999
Q ss_pred CCCCCCchhhHHHHHHHHH
Q 025114 179 HQCESGDAYTEALNRLSTL 197 (257)
Q Consensus 179 h~~~~~~~~~~~~~~v~~l 197 (257)
||++.+ ..| |++..|
T Consensus 924 Hdl~~i-~~a---DrIivL 938 (993)
T 2ygr_A 924 HNLDVI-KTS---DWIIDL 938 (993)
T ss_dssp CCHHHH-TTC---SEEEEE
T ss_pred CCHHHH-HhC---CEEEEE
Confidence 996543 234 555444
No 68
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.75 E-value=3.9e-22 Score=185.68 Aligned_cols=146 Identities=12% Similarity=0.099 Sum_probs=102.9
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----C-C-ceecchhh-----hhh
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----G-Y-SFFDCDTL-----IEQ 94 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g-~-~~~d~~~~-----~~~ 94 (257)
.++++++||++.|+ ++||++++ |++++|+||||||||||+|+|+|++ | . ++++++.. +.+
T Consensus 116 ~~mi~~~nl~~~y~------~vsl~i~~---Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq 186 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------KIRMSNFE---GPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPG 186 (460)
T ss_dssp CTHHHHHHHHHHHH------HHHHHSSS---CCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSS
T ss_pred cchhhhhhhhehhh------cCceEeCC---CCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeecc
Confidence 46789999999996 79999999 9999999999999999999999987 6 5 77776421 001
Q ss_pred c------CCCCCHHHHHHHhCch-----HHHHHHHHHHHHhcccC-ccccccChhHhHHHHHHHH--hh-CCcE----EE
Q 025114 95 S------VDGTSVAEIFKLYGEG-----FFREKETEVLQKLSLMR-QLVVSTGGGAVTRPINWRY--MQ-KGIS----VW 155 (257)
Q Consensus 95 ~------~~~~~v~e~~~~~g~~-----~~~~~~~~~l~~l~~~~-~~v~~lsgG~~qr~~~a~~--l~-~~~v----l~ 155 (257)
. ....++.+.+ . +.. ...++..++++.+++.+ ..+..||||++||++++++ +. +|++ ++
T Consensus 187 ~~~l~~~~~~~tv~eni-~-~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLl 264 (460)
T 2npi_A 187 CISATPISDILDAQLPT-W-GQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCI 264 (460)
T ss_dssp CCEEEECCSCCCTTCTT-C-SCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEE
T ss_pred chhhcccccccchhhhh-c-ccccccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEE
Confidence 0 0112333322 1 110 00111223455566544 2378999999999999977 75 8999 99
Q ss_pred EEC-CHHHH------HHHH-HhcCCCCccccCCCC
Q 025114 156 LDV-PLEAL------AQRI-AAVGTDSRPLLHQCE 182 (257)
Q Consensus 156 LDe-p~~~L------~~rl-~~~g~~~~~~~h~~~ 182 (257)
||| |+++| +.++ +..+.+++.++|+.+
T Consensus 265 LDEpPts~LD~~~~~l~~l~~~~~~tviiVth~~~ 299 (460)
T 2npi_A 265 VDTPSISQLDENLAELHHIIEKLNVNIMLVLCSET 299 (460)
T ss_dssp EECCCGGGSCSSCHHHHHHHHHTTCCEEEEECCSS
T ss_pred EeCCcccccChhHHHHHHHHHHhCCCEEEEEccCc
Confidence 999 99985 3333 344788999999855
No 69
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.73 E-value=2.1e-17 Score=133.16 Aligned_cols=166 Identities=33% Similarity=0.545 Sum_probs=113.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccCccccccCh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGG 136 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~~lsg 136 (257)
+++++|+|||||||||++++|++.++++++++|.+..... +.++..+++..|+..|+..+..++..+...+..+..+++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~-~~~i~~i~~~~g~~~~~~~~~~~l~~l~~~~~~v~~~~~ 82 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT-GADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGG 82 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEEECCT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHh-CcCHHHHHHHHhHHHHHHHHHHHHHHHHhCCCeEEECCC
Confidence 6789999999999999999999999999999998876655 677888888777777777666677766544455666666
Q ss_pred hHhHHHHHHHHhhC-CcEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhc-ccceecc
Q 025114 137 GAVTRPINWRYMQK-GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN-ANARVSL 214 (257)
Q Consensus 137 G~~qr~~~a~~l~~-~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~-~~~~~~~ 214 (257)
|.........++.. +.+++|+.|.+.+.+|+..++ .++.... +... .+++..++..|.+.|.. ++.++
T Consensus 83 ~~~~~~~~~~~l~~~~~~i~l~~~~~~l~~R~~~r~--~r~~~~~-~~~~-----~~~~~~~~~~r~~~~~~~a~~~i-- 152 (173)
T 1kag_A 83 GSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDK--KRPLLHV-ETPP-----REVLEALANERNPLYEEIADVTI-- 152 (173)
T ss_dssp TGGGSHHHHHHHHHHSEEEECCCCHHHHHSCC--------CCSSS-SCCC-----HHHHHHHHHHHHHHHHHHCSEEC--
T ss_pred eEEecHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCC--CCCCCCC-CCch-----HHHHHHHHHHHHHHHHhhCCEEE--
Confidence 65544444444543 678899999999999887542 2333221 1110 15566777777787765 44443
Q ss_pred hhhhhhccccCCCCCCHHHHHHHHHHHHH
Q 025114 215 ENIAVKLGHKDVSSLTPVTIAIEALEQIE 243 (257)
Q Consensus 215 ~~l~~~~~~~~~~~~~~~~~~~~i~~~i~ 243 (257)
+++..++++++++|.+.+.
T Consensus 153 ----------d~~~~~~~~~~~~i~~~l~ 171 (173)
T 1kag_A 153 ----------RTDDQSAKVVANQIIHMLE 171 (173)
T ss_dssp ---------------CHHHHHHHHHHHHC
T ss_pred ----------ECCCCCHHHHHHHHHHHHH
Confidence 5666899999998887764
No 70
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.66 E-value=8.5e-16 Score=124.32 Aligned_cols=158 Identities=32% Similarity=0.494 Sum_probs=117.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccCccccccChhH
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGA 138 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~~lsgG~ 138 (257)
+++|+|++||||||+++.|+..++.++++.|.+.+... +.++.+++...++..|+..+.++++.+......+..+++|.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~-g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~g~~~ 84 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKF-NQKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGGF 84 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHH-TSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEECCTTG
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHc-CCCHHHHHHHcCHHHHHHHHHHHHHHHHccCCEEEECCCCE
Confidence 68999999999999999999999999999999887766 78888888877887887777777776553345566777765
Q ss_pred hHHHHHHHHhh-CCcEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhc-ccceecchh
Q 025114 139 VTRPINWRYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN-ANARVSLEN 216 (257)
Q Consensus 139 ~qr~~~a~~l~-~~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~-~~~~~~~~~ 216 (257)
... .. +. ...+++||.|.+.+.+|+..+....++...+ .+.+..++..|.+.|.. ++.++
T Consensus 85 ~~~-~~---l~~~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~----------~~~i~~~~~~r~~~y~~~~~~~I---- 146 (175)
T 1via_A 85 VNV-SN---LEKAGFCIYLKADFEYLKKRLDKDEISKRPLFYD----------EIKAKKLYNERLSKYEQKANFIL---- 146 (175)
T ss_dssp GGS-TT---GGGGCEEEEEECCHHHHTTCCCGGGTTTSCTTCC----------HHHHHHHHHHHHHHHHHHCSEEE----
T ss_pred ehh-hH---HhcCCEEEEEeCCHHHHHHHHhcccCCCCCCccc----------HHHHHHHHHHHHHHHHhcCCEEE----
Confidence 543 21 43 3678999999999988886432112333221 15677778888888865 44444
Q ss_pred hhhhccccCCCCCCHHHHHHHHHHHHH
Q 025114 217 IAVKLGHKDVSSLTPVTIAIEALEQIE 243 (257)
Q Consensus 217 l~~~~~~~~~~~~~~~~~~~~i~~~i~ 243 (257)
+++..++++++++|.+.+.
T Consensus 147 --------dt~~~~~eev~~~I~~~l~ 165 (175)
T 1via_A 147 --------NIENKNIDELLSEIKKVIK 165 (175)
T ss_dssp --------ECTTCCHHHHHHHHHHHHC
T ss_pred --------ECCCCCHHHHHHHHHHHHH
Confidence 5676899999998887774
No 71
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.66 E-value=9e-17 Score=147.05 Aligned_cols=39 Identities=23% Similarity=0.364 Sum_probs=35.9
Q ss_pred ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC
Q 025114 40 EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG 82 (257)
Q Consensus 40 ~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg 82 (257)
+..+|++++|++.+ | +++|+|+||||||||+++|+++++
T Consensus 47 nf~~l~~v~l~~~~---G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 47 NLATITQLELELGG---G-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EETTEEEEEEECCS---S-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cccceeeEEEecCC---C-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999 9 999999999999999999988875
No 72
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.63 E-value=4.2e-15 Score=119.36 Aligned_cols=158 Identities=32% Similarity=0.518 Sum_probs=111.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccCcc-ccccC
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQL-VVSTG 135 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~-v~~ls 135 (257)
-++++|+|++||||||+++.|+..+|.+++|.|.+..... +.++.+++...|+..|+..+.+++..+...+.. +...+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~-g~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~Vi~~g 85 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV-GLSVREIFEELGEDNFRMFEKNLIDELKTLKTPHVISTG 85 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH-TSCHHHHHHHTCHHHHHHHHHHHHHHHHTCSSCCEEECC
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHh-CCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCCEEEECC
Confidence 4789999999999999999999999999999999888776 888999998888888877777777665433345 66677
Q ss_pred hhHhHHHHHHHHhhC-CcEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhc-ccceec
Q 025114 136 GGAVTRPINWRYMQK-GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN-ANARVS 213 (257)
Q Consensus 136 gG~~qr~~~a~~l~~-~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~-~~~~~~ 213 (257)
+|.... .. +.. ..+++|+.|.+.+.+|+..++...++...+ . +++..++..|...|.. ++.++
T Consensus 86 ~g~~~~-~~---l~~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~------~----~~~~~~~~~r~~~~~~~a~~~I- 150 (168)
T 1zuh_A 86 GGIVMH-EN---LKGLGTTFYLKMDFETLIKRLNQKEREKRPLLNN------L----TQAKELFEKRQALYEKNASFII- 150 (168)
T ss_dssp GGGGGC-GG---GTTSEEEEEEECCHHHHHHHHCC--------CCT------T----HHHHHHHHHHHHHHHHTCSEEE-
T ss_pred CCEech-hH---HhcCCEEEEEECCHHHHHHHHhccCCCCCCCccC------H----HHHHHHHHHHHHHHHHHCCEEE-
Confidence 775544 21 443 468899999999999997542112332221 1 4566667777777765 45444
Q ss_pred chhhhhhccccCCCCCCHHHHHHHHHHHH
Q 025114 214 LENIAVKLGHKDVSSLTPVTIAIEALEQI 242 (257)
Q Consensus 214 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~i 242 (257)
+++. +++++++.|.+.+
T Consensus 151 -----------d~~~-~~e~~~~~I~~~l 167 (168)
T 1zuh_A 151 -----------DARG-GLNNSLKQVLQFI 167 (168)
T ss_dssp -----------EGGG-CHHHHHHHHHHC-
T ss_pred -----------ECCC-CHHHHHHHHHHHh
Confidence 4455 8999998876543
No 73
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.63 E-value=6.3e-18 Score=141.72 Aligned_cols=130 Identities=12% Similarity=0.049 Sum_probs=74.4
Q ss_pred eeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---CCceec-c-hh--hhhhcC--CCCCHHHHHH
Q 025114 36 APIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---GYSFFD-C-DT--LIEQSV--DGTSVAEIFK 106 (257)
Q Consensus 36 ~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---g~~~~d-~-~~--~~~~~~--~~~~v~e~~~ 106 (257)
|.|+++.+|+++ ++ |++++|+||||||||||+|+|+|+. |.+... . .. ...... -.....+.+.
T Consensus 8 k~~g~~~~l~~i----~~---Ge~~~liG~nGsGKSTLl~~l~Gl~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~ 80 (208)
T 3b85_A 8 KTLGQKHYVDAI----DT---NTIVFGLGPAGSGKTYLAMAKAVQALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKID 80 (208)
T ss_dssp CSHHHHHHHHHH----HH---CSEEEEECCTTSSTTHHHHHHHHHHHHTTSCSEEEEEECSCCTTCCCCSSCC------C
T ss_pred CCHhHHHHHHhc----cC---CCEEEEECCCCCCHHHHHHHHhcCCCcCCeeeeEEecCCchhhhcceEEecCCHHHHHH
Confidence 567888899996 77 9999999999999999999999981 222110 0 00 000000 0001112110
Q ss_pred HhCchHH--------HHHHHHHHHHhcccCccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH----HHHHH--hcC
Q 025114 107 LYGEGFF--------REKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL----AQRIA--AVG 171 (257)
Q Consensus 107 ~~g~~~~--------~~~~~~~l~~l~~~~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L----~~rl~--~~g 171 (257)
......+ .....++++. +.||+||+.+++++. +|++++||||+++- .+-+. ..|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~-----------glGq~qrv~lAraL~~~p~lllLDEPts~~~~~l~~~l~~l~~g 149 (208)
T 3b85_A 81 PYLRPLHDALRDMVEPEVIPKLMEA-----------GIVEVAPLAYMRGRTLNDAFVILDEAQNTTPAQMKMFLTRLGFG 149 (208)
T ss_dssp TTTHHHHHHHTTTSCTTHHHHHHHT-----------TSEEEEEGGGGTTCCBCSEEEEECSGGGCCHHHHHHHHTTBCTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHh-----------CCchHHHHHHHHHHhcCCCEEEEeCCccccHHHHHHHHHHhcCC
Confidence 0000000 0111222222 239999999998886 79999999999863 22222 236
Q ss_pred CCCccccCCCCCC
Q 025114 172 TDSRPLLHQCESG 184 (257)
Q Consensus 172 ~~~~~~~h~~~~~ 184 (257)
.+++ ++||++.+
T Consensus 150 ~tii-vtHd~~~~ 161 (208)
T 3b85_A 150 SKMV-VTGDITQV 161 (208)
T ss_dssp CEEE-EEEC----
T ss_pred CEEE-EECCHHHH
Confidence 7788 99997654
No 74
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.62 E-value=9.6e-17 Score=137.24 Aligned_cols=137 Identities=14% Similarity=-0.036 Sum_probs=80.7
Q ss_pred eeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCc----------eecchhhhhhcCCCCCHHHHHH
Q 025114 37 PIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYS----------FFDCDTLIEQSVDGTSVAEIFK 106 (257)
Q Consensus 37 ~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~----------~~d~~~~~~~~~~~~~v~e~~~ 106 (257)
+-+++++|+++||++++ |++++|+||||||||||+|+|++++|.+ +++.+.+ +...++.++..
T Consensus 8 ~~~~~~~l~~isl~i~~---g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~----~~~l~~~~~~~ 80 (245)
T 2jeo_A 8 SSGVDLGTENLYFQSMR---PFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRF----YKVLTAEQKAK 80 (245)
T ss_dssp ---------------CC---SEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGG----BCCCCHHHHHH
T ss_pred cCCCceeecceeccCCC---CEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcC----ccccCHhHhhh
Confidence 34677899999999999 9999999999999999999999998865 4455432 22456666543
Q ss_pred HhCc-------hH-HHHHHHHHHHHhcc-cCccccccChhHhHHHHHHHHhhCCcEEEEECCHHHHHHHHHhc-CCCCcc
Q 025114 107 LYGE-------GF-FREKETEVLQKLSL-MRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAV-GTDSRP 176 (257)
Q Consensus 107 ~~g~-------~~-~~~~~~~~l~~l~~-~~~~v~~lsgG~~qr~~~a~~l~~~~vl~LDep~~~L~~rl~~~-g~~~~~ 176 (257)
.... .. ..+...+.++.+.- ....+..+|+|+.+++.++..+.+|.+++||+|.......+... +.++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~~~~~~~~~~lilDg~~~~~~~~l~~~~~~~i~v 160 (245)
T 2jeo_A 81 ALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFV 160 (245)
T ss_dssp HHTTCCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEECTTTTTSHHHHTTCSEEEEE
T ss_pred hhccCCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCceEEecCCCEEEEeCccccccHHHHHhcCeEEEE
Confidence 3211 11 11222344554421 23677889999999886532233689999999986654555443 567777
Q ss_pred ccCC
Q 025114 177 LLHQ 180 (257)
Q Consensus 177 ~~h~ 180 (257)
.+|+
T Consensus 161 ~th~ 164 (245)
T 2jeo_A 161 DTDS 164 (245)
T ss_dssp ECCH
T ss_pred ECCH
Confidence 7786
No 75
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.60 E-value=1.3e-14 Score=118.05 Aligned_cols=164 Identities=33% Similarity=0.466 Sum_probs=115.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccCccccccChh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGG 137 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~~lsgG 137 (257)
.+|+|+|++||||||+++.|+..+|.++++.|.+..... +.++.+++...|+..|+..+.++++.+......+...++|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~-g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~g~~ 81 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT-GRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGG 81 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH-SSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEEECCTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHc-CCCHHHHHHHhChHHHHHHHHHHHHHHHhcCCeEEecCCc
Confidence 469999999999999999999999999999999887766 7788888877787778777666666543333555566666
Q ss_pred HhHHHHHHHHhhCCcEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhc-ccceecchh
Q 025114 138 AVTRPINWRYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN-ANARVSLEN 216 (257)
Q Consensus 138 ~~qr~~~a~~l~~~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~-~~~~~~~~~ 216 (257)
..........+....+++|+.|.+.+.+|+..++ .++.... .. . .+++..++..|...|.. ++.++
T Consensus 82 ~v~~~~~~~~l~~~~vV~L~~~~e~~~~Rl~~r~--~r~~~~~---~~-~---~~~i~~~~~~r~~~~~~~~~~~I---- 148 (184)
T 2iyv_A 82 AVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNT--VRPLLAG---PD-R---AEKYRALMAKRAPLYRRVATMRV---- 148 (184)
T ss_dssp GGGSHHHHHHHTTSCEEEEECCHHHHHHHTTCCC--CCSSTTS---CC-H---HHHHHHHHHHHHHHHHHHCSEEE----
T ss_pred EEcCHHHHHHHcCCeEEEEeCCHHHHHHHHhCCC--CCCCccC---CC-H---HHHHHHHHHHHHHHHhccCCEEE----
Confidence 5444333333434579999999999999987542 2333221 11 1 24566677777777754 44444
Q ss_pred hhhhccccCCCCCCHHHHHHHHHHHHH
Q 025114 217 IAVKLGHKDVSSLTPVTIAIEALEQIE 243 (257)
Q Consensus 217 l~~~~~~~~~~~~~~~~~~~~i~~~i~ 243 (257)
+++..++++++.+|.+.+.
T Consensus 149 --------dt~~~s~ee~~~~I~~~l~ 167 (184)
T 2iyv_A 149 --------DTNRRNPGAVVRHILSRLQ 167 (184)
T ss_dssp --------ECSSSCHHHHHHHHHTTSC
T ss_pred --------ECCCCCHHHHHHHHHHHHh
Confidence 5666799999887766553
No 76
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.60 E-value=1.1e-16 Score=144.83 Aligned_cols=54 Identities=13% Similarity=0.071 Sum_probs=45.1
Q ss_pred ccccccChhHhHHHHHHHHhh-------CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCC
Q 025114 129 QLVVSTGGGAVTRPINWRYMQ-------KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCE 182 (257)
Q Consensus 129 ~~v~~lsgG~~qr~~~a~~l~-------~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~ 182 (257)
+++..|||||+||+.+++++. +|++++||||+++| ++++...|.++++++||++
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~ 346 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE 346 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH
Confidence 577899999999999987765 79999999999998 3444445789999999954
No 77
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.59 E-value=2.7e-19 Score=158.09 Aligned_cols=158 Identities=11% Similarity=-0.020 Sum_probs=94.5
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh-CCceecchhhhhhcCCCCCHHH-HH
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL-GYSFFDCDTLIEQSVDGTSVAE-IF 105 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l-g~~~~d~~~~~~~~~~~~~v~e-~~ 105 (257)
+|+++||++.|+ ..+|+++||+|++ |++++|+||||||||||+++|+|++ |.+....... ...+ ..++.+ .+
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~---Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I~~~v~q~-~~lf-~~ti~~~ni 174 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPK---KNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHK-SHFW-LASLADTRA 174 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTT---CSEEEEECSSSSSHHHHHHHHHHHHTCEEECGGGTT-SGGG-GGGGTTCSC
T ss_pred eEEEEEEEEEcC-hhhhccceEEecC---CCEEEEECCCCCcHHHHHHHHhhhcCceEEEEecCc-cccc-cccHHHHhh
Confidence 589999999998 7899999999999 9999999999999999999999987 3222111000 0000 112211 11
Q ss_pred HHhCchHHHHHHHHHHHH-hcccCccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHHHHHHHhcCCCCccccCCCCC
Q 025114 106 KLYGEGFFREKETEVLQK-LSLMRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCES 183 (257)
Q Consensus 106 ~~~g~~~~~~~~~~~l~~-l~~~~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~ 183 (257)
... ... .....+.++. +...-. ...|||||+|| |+++. +|++++ |++|+..... .+..++|++..
T Consensus 175 ~~~-~~~-~~~~~~~i~~~L~~gld-g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~---~i~~ltH~~~~ 241 (305)
T 2v9p_A 175 ALV-DDA-THACWRYFDTYLRNALD-GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAED---RYLYLHSRVQT 241 (305)
T ss_dssp EEE-EEE-CHHHHHHHHHTTTGGGG-TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCG---GGGGGTTTEEE
T ss_pred ccC-ccc-cHHHHHHHHHHhHccCC-ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHH---HHHHHhCCHHH
Confidence 110 000 0122334444 211112 67899999999 76654 788877 7776433221 12234777543
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhccc
Q 025114 184 GDAYTEALNRLSTLWEERGEAYANAN 209 (257)
Q Consensus 184 ~~~~~~~~~~v~~l~~~r~~~y~~~~ 209 (257)
..+| |++ .|.+|++...|+++
T Consensus 242 -~~~a---D~i-vl~~G~iv~~g~~~ 262 (305)
T 2v9p_A 242 -FRFE---QPC-TDESGEQPFNITDA 262 (305)
T ss_dssp -EECC---CCC-CCC---CCCCCCHH
T ss_pred -HHhC---CEE-EEeCCEEEEeCCHH
Confidence 3455 788 77777766555443
No 78
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.58 E-value=5.5e-17 Score=145.05 Aligned_cols=132 Identities=14% Similarity=0.109 Sum_probs=90.2
Q ss_pred ecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCC----ceecchhhhhhcCCCCCHHHHHH
Q 025114 31 SGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGY----SFFDCDTLIEQSVDGTSVAEIFK 106 (257)
Q Consensus 31 ~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~----~~~d~~~~~~~~~~~~~v~e~~~ 106 (257)
++++++ | ..+++++||++++ |++++|+||||||||||+++|+|++.+ +.+++... + ...
T Consensus 151 ~~~v~f-y--~~~l~~l~~~i~~---g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e----~-~~~------ 213 (330)
T 2pt7_A 151 YNLLDN-K--EQAISAIKDGIAI---GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE----I-VFK------ 213 (330)
T ss_dssp TTTSTT-H--HHHHHHHHHHHHH---TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC----C-CCS------
T ss_pred cCchhh-H--HHHHhhhhhhccC---CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec----c-ccc------
Confidence 556666 6 4589999999999 999999999999999999999998743 23332110 0 000
Q ss_pred HhCchHHHHHHHHHHHHhcccCccccccChhHhHHHHHHHHhh-CCcEEEEECCHHH----HHHHHHhcCCCCccccCCC
Q 025114 107 LYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEA----LAQRIAAVGTDSRPLLHQC 181 (257)
Q Consensus 107 ~~g~~~~~~~~~~~l~~l~~~~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~----L~~rl~~~g~~~~~~~h~~ 181 (257)
. .+ +.+++ + .+||+.|+..+++++. +|++++||||++. +++.+...+.++..++|+.
T Consensus 214 --~---~~-------~~i~~----~--~ggg~~~r~~la~aL~~~p~ilildE~~~~e~~~~l~~~~~g~~tvi~t~H~~ 275 (330)
T 2pt7_A 214 --H---HK-------NYTQL----F--FGGNITSADCLKSCLRMRPDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAG 275 (330)
T ss_dssp --S---CS-------SEEEE----E--CBTTBCHHHHHHHHTTSCCSEEEECCCCSTHHHHHHHHHHTTCCCEEEEEECS
T ss_pred --c---ch-------hEEEE----E--eCCChhHHHHHHHHhhhCCCEEEEcCCChHHHHHHHHHHhcCCCEEEEEEccc
Confidence 0 00 00111 0 0289999999998887 7999999999952 2444443234678899996
Q ss_pred CCCchhhHHHHHHHHHHHHH
Q 025114 182 ESGDAYTEALNRLSTLWEER 201 (257)
Q Consensus 182 ~~~~~~~~~~~~v~~l~~~r 201 (257)
+ +...+ +++..+..+.
T Consensus 276 ~-~~~~~---dri~~l~~g~ 291 (330)
T 2pt7_A 276 S-SEEAF---IRLANMSSSN 291 (330)
T ss_dssp S-HHHHH---HHHHHHHHTS
T ss_pred H-HHHHh---hhheehhcCC
Confidence 6 55454 8887776653
No 79
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.57 E-value=5.5e-14 Score=112.86 Aligned_cols=164 Identities=32% Similarity=0.519 Sum_probs=114.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccCccccccChh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGG 137 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~~lsgG 137 (257)
.+|+|+|++||||||+++.|+..+|..+++.|.+..... +.++.+++...++..|+..+..++..+. ....+...+||
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~vi~~g~~ 80 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTS-GMTVADVVAAEGWPGFRRRESEALQAVA-TPNRVVATGGG 80 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH-CSCHHHHHHHHHHHHHHHHHHHHHHHHC-CSSEEEECCTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHh-CCCHHHHHHHcCHHHHHHHHHHHHHHhh-cCCeEEECCCc
Confidence 469999999999999999999999999999998877665 7788887766666667666666777665 44556666766
Q ss_pred HhHHHHHHHHhh-CCcEEEEECCHHHHHHHHH--hcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecc
Q 025114 138 AVTRPINWRYMQ-KGISVWLDVPLEALAQRIA--AVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSL 214 (257)
Q Consensus 138 ~~qr~~~a~~l~-~~~vl~LDep~~~L~~rl~--~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~ 214 (257)
..........+. ...+++||.|.+.+.+|+. .++ ..++.... . +...++...+..+...|..++.++
T Consensus 81 ~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~~~r~-~~r~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~I-- 150 (173)
T 1e6c_A 81 MVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASLQA-HQRPTLTG----R---PIAEEMEAVLREREALYQDVAHYV-- 150 (173)
T ss_dssp GGGSHHHHHHHHHHSEEEEEECCHHHHHHHHHHHHCS-CCCCCTTH----H---HHHHHHHHHHHHHHHHHHHHCSEE--
T ss_pred EEeCHHHHHHHHcCCeEEEEECCHHHHHHHHhhccCC-CCCCcCCC----C---CHHHHHHHHHHHHHHHHHhCcEEE--
Confidence 544333334443 3578999999999999997 542 11222210 0 112456666777666665544444
Q ss_pred hhhhhhccccCCCCCCHHHHHHHHHHHHH
Q 025114 215 ENIAVKLGHKDVSSLTPVTIAIEALEQIE 243 (257)
Q Consensus 215 ~~l~~~~~~~~~~~~~~~~~~~~i~~~i~ 243 (257)
+++..++++++.+|.+.+.
T Consensus 151 ----------d~~~~~~~~~~~~i~~~l~ 169 (173)
T 1e6c_A 151 ----------VDATQPPAAIVCELMQTMR 169 (173)
T ss_dssp ----------EETTSCHHHHHHHHHHHTT
T ss_pred ----------ECCCCCHHHHHHHHHHHhc
Confidence 4555799999988776653
No 80
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.54 E-value=1.6e-13 Score=109.68 Aligned_cols=161 Identities=37% Similarity=0.649 Sum_probs=112.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccCccccccChhH
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGA 138 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~~lsgG~ 138 (257)
+|+|.|++||||||+++.|+..+|..+++.|.+..... +..+.+++...++..|+..+.+++..+......|...++|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~Vi~~g~~~ 80 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKRE-GLSIPQIFEKKGEAYFRKLEFEVLKDLSEKENVVISTGGGL 80 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH-TSCHHHHHHHSCHHHHHHHHHHHHHHHTTSSSEEEECCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHc-CCCHHHHHHHhChHHHHHHHHHHHHHHhccCCeEEECCCCE
Confidence 68999999999999999999999999999999887766 78888888877877776666667766653345666666665
Q ss_pred hHHHHHHHHhhC-CcEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccceecchhh
Q 025114 139 VTRPINWRYMQK-GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYANANARVSLENI 217 (257)
Q Consensus 139 ~qr~~~a~~l~~-~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~~~~~~~~~~l 217 (257)
.........+.+ ..+++||.|.+.+.+|+..++ .++...+ +. .++...+..+...|..++.++
T Consensus 81 ~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~r~--~r~~~~~------~~---~~i~~~~~~~~~~~~~~~~~i----- 144 (168)
T 2pt5_A 81 GANEEALNFMKSRGTTVFIDIPFEVFLERCKDSK--ERPLLKR------PL---DEIKNLFEERRKIYSKADIKV----- 144 (168)
T ss_dssp HTCHHHHHHHHTTSEEEEEECCHHHHHHHCBCTT--CCBGGGS------CG---GGTHHHHHHHHHHHTTSSEEE-----
T ss_pred eCCHHHHHHHHcCCEEEEEECCHHHHHHHHhCCC--CCCCCcc------hH---HHHHHHHHHHHHHHHhCCEEE-----
Confidence 443333444543 578899999999999986532 2332211 00 234445555556665433332
Q ss_pred hhhccccCCCCCCHHHHHHHHHHHHHh
Q 025114 218 AVKLGHKDVSSLTPVTIAIEALEQIEG 244 (257)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~i~~~i~~ 244 (257)
++..++++++.+|.+.+.+
T Consensus 145 --------~~~~~~~~~~~~i~~~l~~ 163 (168)
T 2pt5_A 145 --------KGEKPPEEVVKEILLSLEG 163 (168)
T ss_dssp --------ECSSCHHHHHHHHHHHHHT
T ss_pred --------CCCCCHHHHHHHHHHHHHh
Confidence 2347999999988877753
No 81
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.53 E-value=7.1e-17 Score=143.25 Aligned_cols=128 Identities=10% Similarity=-0.023 Sum_probs=89.3
Q ss_pred ceEEecceeeeeCccccccccceE-----------------------ecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCC
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQE-----------------------IEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGY 83 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~-----------------------i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~ 83 (257)
..|++++|++.|+ ++++++++. +.+ |++++|+||||||||||+++|+|++.+
T Consensus 42 ~~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 42 EQIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPV---PFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCC---CEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CeEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCC---CEEEEEECCCCchHHHHHHHHHhhccc
Confidence 3689999999995 577777765 677 999999999999999999999998842
Q ss_pred -------ceecchhhhhhcCCCCCHHHHHHH---hCc--hHHHHHHHHHHHHhccc--CccccccChhHhHHHHHHHHhh
Q 025114 84 -------SFFDCDTLIEQSVDGTSVAEIFKL---YGE--GFFREKETEVLQKLSLM--RQLVVSTGGGAVTRPINWRYMQ 149 (257)
Q Consensus 84 -------~~~d~~~~~~~~~~~~~v~e~~~~---~g~--~~~~~~~~~~l~~l~~~--~~~v~~lsgG~~qr~~~a~~l~ 149 (257)
.++..|... + ..++.+.+.. .+. ....+...++++.++.. +..+..+|||++||+.+++++.
T Consensus 117 ~~G~~~v~~v~qd~~~---~-~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~ 192 (312)
T 3aez_A 117 WDHHPRVDLVTTDGFL---Y-PNAELQRRNLMHRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVV 192 (312)
T ss_dssp STTCCCEEEEEGGGGB---C-CHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEE
T ss_pred cCCCCeEEEEecCccC---C-cccHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHhc
Confidence 123333221 1 1134443321 121 11123445677777632 2567899999999999886665
Q ss_pred -CCcEEEEECCHHHH
Q 025114 150 -KGISVWLDVPLEAL 163 (257)
Q Consensus 150 -~~~vl~LDep~~~L 163 (257)
+|++++||||+..+
T Consensus 193 ~~p~ilIlDep~~~~ 207 (312)
T 3aez_A 193 RHPDILILEGLNVLQ 207 (312)
T ss_dssp CSCSEEEEECTTTTC
T ss_pred cCCCEEEECCccccC
Confidence 79999999998764
No 82
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.52 E-value=5.6e-15 Score=120.75 Aligned_cols=113 Identities=15% Similarity=0.015 Sum_probs=66.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhc--CCCCCHHHHHHH-hCchHHHHHHHHHHHHh-----cccCcc
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQS--VDGTSVAEIFKL-YGEGFFREKETEVLQKL-----SLMRQL 130 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~--~~~~~v~e~~~~-~g~~~~~~~~~~~l~~l-----~~~~~~ 130 (257)
+++|+||||||||||+|+|+|+++. .+++....+.. .....+...++. .+.. .++..+ ....+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i-~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 73 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK-RAIGFWTEEVRDPETKKRTGFRIITTEGKK-------KIFSSKFFTSKKLVGSY 73 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG-GEEEEEEEEEC------CCEEEEEETTCCE-------EEEEETTCCCSSEETTE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-cCCCEEhhhhccccccceeEEEeecCcHHH-------HHHHhhcCCcccccccc
Confidence 6899999999999999999999863 33321110000 000000000000 0000 000001 122467
Q ss_pred ccccChhHhHHHHHHHH-----hh-CCcEEEEEC--CHHHHH--------HHHHhcCCCCccccC
Q 025114 131 VVSTGGGAVTRPINWRY-----MQ-KGISVWLDV--PLEALA--------QRIAAVGTDSRPLLH 179 (257)
Q Consensus 131 v~~lsgG~~qr~~~a~~-----l~-~~~vl~LDe--p~~~L~--------~rl~~~g~~~~~~~h 179 (257)
+..|||||+|++.++++ +. +|.+++||| |++.++ +.+...+.+++.++|
T Consensus 74 ~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H 138 (178)
T 1ye8_A 74 GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIP 138 (178)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECC
T ss_pred ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEc
Confidence 88899999999999985 54 799999999 998872 223333444777776
No 83
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.52 E-value=1.2e-15 Score=137.16 Aligned_cols=168 Identities=9% Similarity=0.000 Sum_probs=99.1
Q ss_pred cceEEecceeeeeC-ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCc----eecchhh--hhhcCCC
Q 025114 26 ASVLESGNVHAPID-EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYS----FFDCDTL--IEQSVDG 98 (257)
Q Consensus 26 ~~~l~~~~l~~~~~-~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~----~~d~~~~--~~~~~~~ 98 (257)
.++++++++++.|+ +..+|+++ |+|.+ |++++|+||||||||||+++|+|.+... .+.+.+. .......
T Consensus 43 ~~~i~~~~l~~~~~tg~~ald~l-l~i~~---Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~ 118 (347)
T 2obl_A 43 PDPLLRQVIDQPFILGVRAIDGL-LTCGI---GQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLAL 118 (347)
T ss_dssp SCSTTCCCCCSEECCSCHHHHHH-SCEET---TCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTT
T ss_pred CCCeeecccceecCCCCEEEEee-eeecC---CCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHh
Confidence 35789999999998 78899999 99999 9999999999999999999999998532 2222110 0000000
Q ss_pred CCHHHHHHH-------hCchHHHHHHHHHHHHhcc----cC---------ccccccChhHhHHHHHHHHhhCCcE-EEEE
Q 025114 99 TSVAEIFKL-------YGEGFFREKETEVLQKLSL----MR---------QLVVSTGGGAVTRPINWRYMQKGIS-VWLD 157 (257)
Q Consensus 99 ~~v~e~~~~-------~g~~~~~~~~~~~l~~l~~----~~---------~~v~~lsgG~~qr~~~a~~l~~~~v-l~LD 157 (257)
..- ..+.. .+.... .+....+..+.+ .+ ..+..+|+|+ +++.++ +.+|.+ -=+|
T Consensus 119 ~~~-~~~~~~v~~~~~~~~~~~-~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la--l~~p~~t~Gld 193 (347)
T 2obl_A 119 LPQ-STLSKCVLVVTTSDRPAL-ERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA--SGEPDVRGGFP 193 (347)
T ss_dssp SCH-HHHTTEEEEEECTTSCHH-HHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH--TTCCCCBTTBC
T ss_pred hhh-hhhhceEEEEECCCCCHH-HHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH--cCCCCcccCCC
Confidence 000 00000 000000 111111111110 01 4577889999 888877 556654 1122
Q ss_pred CCHHH----HHHHHHh--cCC-----CCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhc
Q 025114 158 VPLEA----LAQRIAA--VGT-----DSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN 207 (257)
Q Consensus 158 ep~~~----L~~rl~~--~g~-----~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~ 207 (257)
-.... +++|+.. .|. ++.+.+||++ ..+| |++..+.+|++...++
T Consensus 194 p~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~---d~v~~i~dG~Ivl~~~ 249 (347)
T 2obl_A 194 PSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIG---DEVRSILDGHIVLTRE 249 (347)
T ss_dssp HHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHH---HHHHHHCSEEEEBCHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--Chhh---hheEEeeCcEEEEeCC
Confidence 11111 1334432 255 7788899987 5666 8998888877655554
No 84
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.50 E-value=9.7e-14 Score=114.78 Aligned_cols=168 Identities=15% Similarity=0.138 Sum_probs=88.5
Q ss_pred cccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhh-----cCCCCCHHHHHHHhCchHHHHHH
Q 025114 43 VLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQ-----SVDGTSVAEIFKLYGEGFFREKE 117 (257)
Q Consensus 43 ~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~-----~~~~~~v~e~~~~~g~~~~~~~~ 117 (257)
++.+..++..+ |++++|+||||||||||+|+|++.+|.++++++.+... ...+....+.. ....++..+
T Consensus 18 ~~~~~~m~~~~---g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~ 91 (200)
T 4eun_A 18 LYFQSMMTGEP---TRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTDED---RWPWLRSLA 91 (200)
T ss_dssp ----------C---CCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHHHHHHTTCCCCHHH---HHHHHHHHH
T ss_pred hHHHhhhcCCC---CcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHHHHHhcCCCCCCcc---cccHHHHHH
Confidence 33344456667 99999999999999999999999999999999876321 00122211100 001122222
Q ss_pred HHHHHHhcccCccccccChhHhHHHHHHHHhh----CCcEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHH
Q 025114 118 TEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQ----KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNR 193 (257)
Q Consensus 118 ~~~l~~l~~~~~~v~~lsgG~~qr~~~a~~l~----~~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~ 193 (257)
..+...+......+...+... ......+. ...+++|+.|.+.+.+|+..++.... . . +.
T Consensus 92 ~~~~~~~~~g~~viid~~~~~---~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~~------~-~-------~~ 154 (200)
T 4eun_A 92 EWMDARADAGVSTIITCSALK---RTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGHFM------P-A-------SL 154 (200)
T ss_dssp HHHHHHHHTTCCEEEEECCCC---HHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCCSS------C-G-------GG
T ss_pred HHHHHHHhcCCCEEEEchhhh---HHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccCCC------C-H-------HH
Confidence 222222222222333332211 11122222 24688999999999999976532110 1 0 22
Q ss_pred HHHHHHHHHHHHhc-ccceecchhhhhhccccCCCCCCHHHHHHHHHHHHHhhh
Q 025114 194 LSTLWEERGEAYAN-ANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFL 246 (257)
Q Consensus 194 v~~l~~~r~~~y~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~~ 246 (257)
+..++..+...|.. +..++ +++ .++++++++|.+.+....
T Consensus 155 l~~~~~~~~~~~~~~~~~~I------------d~~-~~~~e~~~~I~~~l~~~~ 195 (200)
T 4eun_A 155 LQSQLATLEALEPDESGIVL------------DLR-QPPEQLIERALTWLDIAP 195 (200)
T ss_dssp HHHHHHHCCCCCTTSCEEEE------------ETT-SCHHHHHHHHHHHHCCCG
T ss_pred HHHHHHHhCCCCCCCCeEEE------------ECC-CCHHHHHHHHHHHHHhcc
Confidence 33444444444443 23333 454 599999998888876543
No 85
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.49 E-value=1.9e-16 Score=145.28 Aligned_cols=117 Identities=13% Similarity=0.087 Sum_probs=77.5
Q ss_pred cccccccceEecCCCCCc--------------------EEEEEcCCCChHHHHHHHHHhhh----CCceecchhhh----
Q 025114 41 AQVLKNKSQEIEPYLSGR--------------------CIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLI---- 92 (257)
Q Consensus 41 ~~~l~~isl~i~~~~~Ge--------------------~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~---- 92 (257)
+.+|++|||+|++ |+ +++|+||||||||||+|+|+|++ |.+.+++.+..
T Consensus 36 ~~~l~~is~~i~~---Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~ 112 (413)
T 1tq4_A 36 QEILNLIELRMRA---GNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERH 112 (413)
T ss_dssp HHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCE
T ss_pred HHHhhhccceecC---CCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEE
Confidence 4689999999999 99 99999999999999999999976 33334332210
Q ss_pred -hhc--CCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC-ccccccChh--HhHHHHHHHHh-h----------CCcEEE
Q 025114 93 -EQS--VDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR-QLVVSTGGG--AVTRPINWRYM-Q----------KGISVW 155 (257)
Q Consensus 93 -~~~--~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~-~~v~~lsgG--~~qr~~~a~~l-~----------~~~vl~ 155 (257)
.+. +...++.+.... + ..+....++++.+++.+ .....+|+| ++|++.+++++ . +|++++
T Consensus 113 v~q~~~~~~ltv~D~~g~-~--~~~~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlll 189 (413)
T 1tq4_A 113 PYKHPNIPNVVFWDLPGI-G--STNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDI 189 (413)
T ss_dssp EEECSSCTTEEEEECCCG-G--GSSCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHH
T ss_pred eccccccCCeeehHhhcc-c--chHHHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccc
Confidence 000 011222221111 0 11123456788887754 222238998 99999999665 4 677889
Q ss_pred EECCHHHH
Q 025114 156 LDVPLEAL 163 (257)
Q Consensus 156 LDep~~~L 163 (257)
||||+++|
T Consensus 190 LDEPtsgL 197 (413)
T 1tq4_A 190 TNEADGEP 197 (413)
T ss_dssp HHHHTTCC
T ss_pred cCcccccC
Confidence 99999876
No 86
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.49 E-value=1.4e-16 Score=147.48 Aligned_cols=166 Identities=8% Similarity=-0.009 Sum_probs=99.4
Q ss_pred ceEEecceeeeeC-ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCC----ceecch---hhhhhc---
Q 025114 27 SVLESGNVHAPID-EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGY----SFFDCD---TLIEQS--- 95 (257)
Q Consensus 27 ~~l~~~~l~~~~~-~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~----~~~d~~---~~~~~~--- 95 (257)
++++++++++.|+ +..+|+++ |+|.+ |++++|+||||||||||+++|+|+... ..+.+. ++.+..
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~---Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~ 205 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGR---GQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENI 205 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBT---TCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTT
T ss_pred CceEEeccceecCCCceEEeee-EEecC---CCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhh
Confidence 5689999999998 68899999 99999 999999999999999999999999843 334443 221100
Q ss_pred ------------C-C-CCCHHHHHHHhCchHHHHHHHHHHHHhcc----cCccccccChhHhHHHHHHHHhhCCcE-EEE
Q 025114 96 ------------V-D-GTSVAEIFKLYGEGFFREKETEVLQKLSL----MRQLVVSTGGGAVTRPINWRYMQKGIS-VWL 156 (257)
Q Consensus 96 ------------~-~-~~~v~e~~~~~g~~~~~~~~~~~l~~l~~----~~~~v~~lsgG~~qr~~~a~~l~~~~v-l~L 156 (257)
. . ..++...+.... .. ....+.+..-+. .-..+..+|+|+ |++.++ +.+|.+ --|
T Consensus 206 ~~~~~l~r~i~~v~q~~~~~~~~~~v~~--~~-~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslA--l~~p~~t~gl 279 (438)
T 2dpy_A 206 LGPDGRARSVVIAAPADVSPLLRMQGAA--YA-TRIAEDFRDRGQHVLLIMDSLTRYAMAQ-REIALA--IGEPPATKGY 279 (438)
T ss_dssp THHHHHHTEEEEEECTTSCHHHHHHHHH--HH-HHHHHHHHTTTCEEEEEEECHHHHHHHH-HHHHHH--TTCCCCSSSC
T ss_pred ccccccCceEEEEECCCCCHHHHHHHHH--HH-HHHHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH--hCCCcccccC
Confidence 0 0 111111000000 00 000011111010 003466789999 888887 666654 123
Q ss_pred ECCHHHH----HHHHHh---c-CC-----CCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhc
Q 025114 157 DVPLEAL----AQRIAA---V-GT-----DSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN 207 (257)
Q Consensus 157 Dep~~~L----~~rl~~---~-g~-----~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~ 207 (257)
|...... ++|+.. . |. ++.+++||++ ..+| |++..+.+|++...++
T Consensus 280 D~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~ia---d~v~~l~dG~Ivl~~~ 338 (438)
T 2dpy_A 280 PPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIA---DSARAILDGHIVLSRR 338 (438)
T ss_dssp CTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHH---HHHHHHSSEEEEECHH
T ss_pred CHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhh---ceEEEEeCcEEEEeCC
Confidence 3333222 333332 2 42 6888899987 5666 8888887776555444
No 87
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.45 E-value=4.4e-15 Score=131.10 Aligned_cols=145 Identities=14% Similarity=0.072 Sum_probs=87.3
Q ss_pred ceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhhh-------------c
Q 025114 33 NVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIEQ-------------S 95 (257)
Q Consensus 33 ~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~~-------------~ 95 (257)
.+...++...+++++||++.+ |++++|+|||||||||+++.|+|++ |.+.+.+.+.... .
T Consensus 79 ~l~~~l~~~~~~~~l~~~~~~---g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~ 155 (302)
T 3b9q_A 79 SVLEMLAKKNSKTELQLGFRK---PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTG 155 (302)
T ss_dssp HHHHHHCC--CCCSCCCCSSS---CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCcccccccccccCC---CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcC
Confidence 344445544445789999999 9999999999999999999999987 4455544322100 0
Q ss_pred C---C---C-CC----HHHHHHHhCchHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCc--EEEEEC
Q 025114 96 V---D---G-TS----VAEIFKLYGEGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGI--SVWLDV 158 (257)
Q Consensus 96 ~---~---~-~~----v~e~~~~~g~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~--vl~LDe 158 (257)
. . + .. +.+.+.... .+.....+++.+++.+ +.+.+|| +|+..+++++. +|. +++||
T Consensus 156 i~~v~q~~~~~~~~~~v~e~l~~~~---~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD- 228 (302)
T 3b9q_A 156 CEIVVAEGDKAKAATVLSKAVKRGK---EEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD- 228 (302)
T ss_dssp CEEECCC--CCCHHHHHHHHHHHHH---HTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-
T ss_pred ceEEEecCCccCHHHHHHHHHHHHH---HcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-
Confidence 0 0 0 00 111111000 0000001122233322 4566677 78999998776 699 99999
Q ss_pred CHHHH-----HHHHHh-cCCCCccccCCCCCCchhh
Q 025114 159 PLEAL-----AQRIAA-VGTDSRPLLHQCESGDAYT 188 (257)
Q Consensus 159 p~~~L-----~~rl~~-~g~~~~~~~h~~~~~~~~~ 188 (257)
|++++ .+++.. .|.+.+.++|. +......
T Consensus 229 ptsglD~~~~~~~~~~~~g~t~iiiThl-D~~~~~g 263 (302)
T 3b9q_A 229 GNTGLNMLPQAREFNEVVGITGLILTKL-DGSARGG 263 (302)
T ss_dssp GGGGGGGHHHHHHHHHHTCCCEEEEECC-SSCSCTH
T ss_pred CCCCcCHHHHHHHHHHhcCCCEEEEeCC-CCCCccC
Confidence 99887 344543 48888999994 6555554
No 88
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.44 E-value=4.1e-16 Score=129.93 Aligned_cols=41 Identities=24% Similarity=0.274 Sum_probs=27.2
Q ss_pred ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCce
Q 025114 40 EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSF 85 (257)
Q Consensus 40 ~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~ 85 (257)
...+++| .+|++ |++++|+||||||||||+|+|+|++...+
T Consensus 8 ~~~~~~~--~~i~~---Gei~~l~GpnGsGKSTLl~~l~gl~~~i~ 48 (207)
T 1znw_A 8 TKPTARG--QPAAV---GRVVVLSGPSAVGKSTVVRCLRERIPNLH 48 (207)
T ss_dssp -------------C---CCEEEEECSTTSSHHHHHHHHHHHSTTCE
T ss_pred CCcCCCC--CCCCC---CCEEEEECCCCCCHHHHHHHHHhhCCceE
Confidence 3557888 78999 99999999999999999999999985333
No 89
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.44 E-value=1.9e-14 Score=143.32 Aligned_cols=131 Identities=14% Similarity=0.075 Sum_probs=86.5
Q ss_pred eEEecceeeee-------CccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh-----CCceecchhhhhhc
Q 025114 28 VLESGNVHAPI-------DEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL-----GYSFFDCDTLIEQS 95 (257)
Q Consensus 28 ~l~~~~l~~~~-------~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l-----g~~~~d~~~~~~~~ 95 (257)
.|.+++..... ++..|++|+||++++ |++++|+|||||||||++|++++.. |.. +..... .
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~---g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~-vpa~~~---~ 712 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDS---ERVMIITGPNMGGKSSYIKQVALITIMAQIGSY-VPAEEA---T 712 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTS---CCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCC-BSSSEE---E
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCC---CeEEEEECCCCCchHHHHHHHHHHHHHhhcCcc-ccchhh---h
Confidence 46666654433 356799999999999 9999999999999999999998753 211 111100 0
Q ss_pred CCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhhCCcEEEEECCHHHH---------
Q 025114 96 VDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEAL--------- 163 (257)
Q Consensus 96 ~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~~~~vl~LDep~~~L--------- 163 (257)
. +. + .+++.+++..+ +....+|+|++++..+++...+|.+++||||++++
T Consensus 713 i-~~-~----------------d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~ 774 (918)
T 3thx_B 713 I-GI-V----------------DGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIA 774 (918)
T ss_dssp E-EC-C----------------SEEEEEC----------CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHH
T ss_pred h-hH-H----------------HHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHH
Confidence 0 00 0 00111122211 34567789999999888877789999999998877
Q ss_pred ---HHHHHh-cCCCCccccCCCCC
Q 025114 164 ---AQRIAA-VGTDSRPLLHQCES 183 (257)
Q Consensus 164 ---~~rl~~-~g~~~~~~~h~~~~ 183 (257)
++.+.. .|.+++.++|+.+.
T Consensus 775 ~~il~~L~~~~g~tvl~vTH~~el 798 (918)
T 3thx_B 775 YATLEYFIRDVKSLTLFVTHYPPV 798 (918)
T ss_dssp HHHHHHHHHTTCCEEEEECSCGGG
T ss_pred HHHHHHHHHhcCCeEEEEeCcHHH
Confidence 344433 48899999999543
No 90
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.44 E-value=4.2e-14 Score=133.67 Aligned_cols=149 Identities=17% Similarity=0.081 Sum_probs=98.1
Q ss_pred eEEecceeeeeCcccccccc-ceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCC-----ceecchhhhhhcCCCCCH
Q 025114 28 VLESGNVHAPIDEAQVLKNK-SQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGY-----SFFDCDTLIEQSVDGTSV 101 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~i-sl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~-----~~~d~~~~~~~~~~~~~v 101 (257)
.+++++++..|.+ |+.+ +..+.+ |++++|+|+||||||||++.+++.... .++..+ .+.
T Consensus 257 ~~~~~~l~~g~~~---ld~vL~g~i~~---G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e---------e~~ 321 (525)
T 1tf7_A 257 RSSNVRVSSGVVR---LDEMCGGGFFK---DSIILATGATGTGKTLLVSRFVENACANKERAILFAYE---------ESR 321 (525)
T ss_dssp CCCCCEECCSCHH---HHHHTTSSEES---SCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS---------SCH
T ss_pred ccccceeecChHH---HHHHhCCCCCC---CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe---------CCH
Confidence 4566777766644 3332 458999 999999999999999999999997632 122211 122
Q ss_pred HHHHH---HhCchHHHHHHHHHHH--HhcccCccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHHH-----------
Q 025114 102 AEIFK---LYGEGFFREKETEVLQ--KLSLMRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEALA----------- 164 (257)
Q Consensus 102 ~e~~~---~~g~~~~~~~~~~~l~--~l~~~~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L~----------- 164 (257)
..++. ..+.. ..++.. .+.+....+..||||++|++.+++++. +|+++++| |+++|+
T Consensus 322 ~~l~~~~~~~g~~-----~~~~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~ 395 (525)
T 1tf7_A 322 AQLLRNAYSWGMD-----FEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQF 395 (525)
T ss_dssp HHHHHHHHTTSCC-----HHHHHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHH
T ss_pred HHHHHHHHHcCCC-----HHHHHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHH
Confidence 22221 11211 111211 123334678899999999999998876 79999999 999872
Q ss_pred -----HHHHhcCCCCccccCCC----------CCCchhhHHHHHHHHHHHH
Q 025114 165 -----QRIAAVGTDSRPLLHQC----------ESGDAYTEALNRLSTLWEE 200 (257)
Q Consensus 165 -----~rl~~~g~~~~~~~h~~----------~~~~~~~~~~~~v~~l~~~ 200 (257)
+.+++.|.+++.++|+. ..+..+| |++..|..+
T Consensus 396 i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~---D~vi~L~~g 443 (525)
T 1tf7_A 396 VIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTIT---DTIILLQYV 443 (525)
T ss_dssp HHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTC---SEEEEEEEE
T ss_pred HHHHHHHHHhCCCEEEEEECcccccCcccccCcccceee---eEEEEEEEE
Confidence 33445688999999997 4455555 666544433
No 91
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.43 E-value=1.6e-15 Score=126.04 Aligned_cols=105 Identities=21% Similarity=0.103 Sum_probs=64.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhC--CceecchhhhhhcCCCCCHHHHHHHh-Cc--hHHHHHHHHHHHHhcccC---
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLG--YSFFDCDTLIEQSVDGTSVAEIFKLY-GE--GFFREKETEVLQKLSLMR--- 128 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg--~~~~d~~~~~~~~~~~~~v~e~~~~~-g~--~~~~~~~~~~l~~l~~~~--- 128 (257)
|++++|+||||||||||+++|+|+++ ..+++.|....... ..++.+..... +. ...++...++++.+++.+
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 84 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLG-HLPLEERLRVNYDHPDAFDLALYLEHAQALLRGLPVE 84 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBCCCT-TSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTTCCEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccccCcc-cccHHHhcCCCCCChhhhhHHHHHHHHHHHHcCCCcC
Confidence 99999999999999999999999988 67777776543222 44555543221 11 112344456667666543
Q ss_pred ccccccChhHh----HHHHHHHHhh-CCcEEEEECCHHH
Q 025114 129 QLVVSTGGGAV----TRPINWRYMQ-KGISVWLDVPLEA 162 (257)
Q Consensus 129 ~~v~~lsgG~~----qr~~~a~~l~-~~~vl~LDep~~~ 162 (257)
+++..+|+|++ |++..++++. +|.++++|||+..
T Consensus 85 ~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~ 123 (211)
T 3asz_A 85 MPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRD 123 (211)
T ss_dssp ECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHT
T ss_pred CCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHH
Confidence 56788898864 3333333332 3444444454443
No 92
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.42 E-value=2.4e-12 Score=106.32 Aligned_cols=127 Identities=20% Similarity=0.212 Sum_probs=75.2
Q ss_pred cceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh---CCc--eecchhhhhhcCC--CCCHHHH
Q 025114 32 GNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL---GYS--FFDCDTLIEQSVD--GTSVAEI 104 (257)
Q Consensus 32 ~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l---g~~--~~d~~~~~~~~~~--~~~v~e~ 104 (257)
+|+++.++...+.++.++..++ |++++|+|||||||||+++.|++.+ |.. +++++.+...... +.+..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~---g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~~~~~~~~~~~ 79 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQK---GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNRDLSFKAEDR 79 (200)
T ss_dssp -------CCCCHHHHHHHHTSC---CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHH
T ss_pred CCCcccccccCHHHHHHhcCCC---CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhhcccCcChHHH
Confidence 5788888888899999999998 9999999999999999999999998 666 8998876432211 2232222
Q ss_pred HHHhCchHHHHHHHHHHHHhcccC-ccccccChhH-hHHHHHHHHhhCCc--EEEEECCHHHHHHHH
Q 025114 105 FKLYGEGFFREKETEVLQKLSLMR-QLVVSTGGGA-VTRPINWRYMQKGI--SVWLDVPLEALAQRI 167 (257)
Q Consensus 105 ~~~~g~~~~~~~~~~~l~~l~~~~-~~v~~lsgG~-~qr~~~a~~l~~~~--vl~LDep~~~L~~rl 167 (257)
.. .+ ....++...+.... ..+.+.++.. ..+..+...+.... .++|+.|.+.+.+|+
T Consensus 80 ~~-----~~-~~~~~~~~~~~~~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~ 140 (200)
T 3uie_A 80 AE-----NI-RRVGEVAKLFADAGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARD 140 (200)
T ss_dssp HH-----HH-HHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHC
T ss_pred HH-----HH-HHHHHHHHHHHhCCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhc
Confidence 11 11 11112222221112 2233333332 33333334343333 489999999999886
No 93
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.42 E-value=1.4e-12 Score=104.97 Aligned_cols=108 Identities=15% Similarity=0.206 Sum_probs=65.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhh------cCCCCCHHHHHHHhCchHHHHHHHHHHHHh-cccC
Q 025114 56 SGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQ------SVDGTSVAEIFKLYGEGFFREKETEVLQKL-SLMR 128 (257)
Q Consensus 56 ~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~------~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l-~~~~ 128 (257)
.|++++|+|+|||||||+++.|++.+|.+++++|.+... .. +..+.+. .+...++..+. ++..+ ....
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~-g~~~~~~---~~~~~~~~~~~-~~~~~~~~~~ 81 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMAS-GEPLNDD---DRKPWLQALND-AAFAMQRTNK 81 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHT-TCCCCHH---HHHHHHHHHHH-HHHHHHHHCS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhc-CcCCCcc---ccccHHHHHHH-HHHHHHhcCC
Confidence 389999999999999999999999999999999876321 12 3332210 11122322222 22221 1112
Q ss_pred ccccccChhHhHHHHHHHHhh-C-C--cEEEEECCHHHHHHHHHhcC
Q 025114 129 QLVVSTGGGAVTRPINWRYMQ-K-G--ISVWLDVPLEALAQRIAAVG 171 (257)
Q Consensus 129 ~~v~~lsgG~~qr~~~a~~l~-~-~--~vl~LDep~~~L~~rl~~~g 171 (257)
..+...++.... ....+. . + .+++||.|.+.+.+|+..++
T Consensus 82 ~~vi~~~~~~~~---~~~~l~~~~~~~~vv~l~~~~e~~~~R~~~R~ 125 (175)
T 1knq_A 82 VSLIVCSALKKH---YRDLLREGNPNLSFIYLKGDFDVIESRLKARK 125 (175)
T ss_dssp EEEEECCCCSHH---HHHHHHTTCTTEEEEEEECCHHHHHHHHHTST
T ss_pred cEEEEeCchHHH---HHHHHHhcCCCEEEEEEECCHHHHHHHHHhcc
Confidence 345555543221 122232 1 2 68999999999999998653
No 94
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.39 E-value=2.1e-14 Score=135.68 Aligned_cols=61 Identities=18% Similarity=0.240 Sum_probs=49.4
Q ss_pred cceEEecceeeeeCccccccccce-EecCCCCCcEEEEEcCCCChHHHHHHH--HHhhh----CCceecch
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQ-EIEPYLSGRCIYLVGMMGSGKTTVGKI--LSGVL----GYSFFDCD 89 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl-~i~~~~~Ge~i~LiG~nGaGKSTLlk~--Lag~l----g~~~~d~~ 89 (257)
..+++.+++.+.+++.++|+++|| .|++ |++++|+||||||||||+++ ++|++ |..++++.
T Consensus 10 ~~~~~~~~~~~~~~g~~~Ld~i~~G~i~~---Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~ 77 (525)
T 1tf7_A 10 NNNSEHQAIAKMRTMIEGFDDISHGGLPI---GRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE 77 (525)
T ss_dssp ----CCSSCCEECCCCTTHHHHTTSSEET---TSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCccccccccccCCchhHHHhcCCCCCC---CeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 346778888887778899999999 9999 99999999999999999999 67876 34555554
No 95
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.39 E-value=1.8e-13 Score=118.37 Aligned_cols=131 Identities=11% Similarity=0.046 Sum_probs=82.5
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC-----CceecchhhhhhcCCCCCHH
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG-----YSFFDCDTLIEQSVDGTSVA 102 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg-----~~~~d~~~~~~~~~~~~~v~ 102 (257)
+++++++++. .+|+++| +++ |++++|+||||||||||+++|+|++. .++++++++. ... ...
T Consensus 5 ~~~l~~l~~~----~vl~~i~--i~~---g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~-~~~-~~~-- 71 (261)
T 2eyu_A 5 IPEFKKLGLP----DKVLELC--HRK---MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-YVF-KHK-- 71 (261)
T ss_dssp -CCGGGSSCC----THHHHGG--GCS---SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCC-SCC-CCS--
T ss_pred CCChHHCCCH----HHHHHHh--hCC---CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcce-eec-CCc--
Confidence 4678888764 5899999 888 99999999999999999999999862 2334333220 000 000
Q ss_pred HHHHHhCchHHHHHHHHHHHHhcccCccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH-----HHHHHhcCCCCcc
Q 025114 103 EIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL-----AQRIAAVGTDSRP 176 (257)
Q Consensus 103 e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L-----~~rl~~~g~~~~~ 176 (257)
...+.. ..+++. . ...+..+++++. +|+++++|||++.- ++. ...|.++..
T Consensus 72 -------~~~v~q------~~~gl~--------~-~~l~~~la~aL~~~p~illlDEp~D~~~~~~~l~~-~~~g~~vl~ 128 (261)
T 2eyu_A 72 -------KSIVNQ------REVGED--------T-KSFADALRAALREDPDVIFVGEMRDLETVETALRA-AETGHLVFG 128 (261)
T ss_dssp -------SSEEEE------EEBTTT--------B-SCHHHHHHHHHHHCCSEEEESCCCSHHHHHHHHHH-HHTTCEEEE
T ss_pred -------ceeeeH------HHhCCC--------H-HHHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHH-HccCCEEEE
Confidence 000000 011111 1 123778887776 89999999997321 222 235788888
Q ss_pred ccCCCCCCchhhHHHHHHHHHH
Q 025114 177 LLHQCESGDAYTEALNRLSTLW 198 (257)
Q Consensus 177 ~~h~~~~~~~~~~~~~~v~~l~ 198 (257)
++|+.+ +..++ +++..|.
T Consensus 129 t~H~~~-~~~~~---dri~~l~ 146 (261)
T 2eyu_A 129 TLHTNT-AIDTI---HRIVDIF 146 (261)
T ss_dssp EECCSS-HHHHH---HHHHHTS
T ss_pred EeCcch-HHHHH---HHHhhhc
Confidence 999955 44444 7776554
No 96
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.38 E-value=2.4e-13 Score=120.76 Aligned_cols=58 Identities=14% Similarity=-0.124 Sum_probs=44.4
Q ss_pred ccccccChhHhHHHHHHHHhh-----CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhh
Q 025114 129 QLVVSTGGGAVTRPINWRYMQ-----KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYT 188 (257)
Q Consensus 129 ~~v~~lsgG~~qr~~~a~~l~-----~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~ 188 (257)
..+..||||++|++.+++++. .|++++||||+++| ++++. .+.+++.++|+.+ ....|
T Consensus 215 ~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~-~~~~~ 288 (322)
T 1e69_A 215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI-VMEAA 288 (322)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT-GGGGC
T ss_pred CchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH-HHhhC
Confidence 467899999999999998763 58999999999988 33332 3667889999843 33444
No 97
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.35 E-value=1.3e-12 Score=110.49 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=36.2
Q ss_pred ceEEecceeeeeCccccccccce-EecCCCCCcEEEEEcCCCChHHHHHHHHH--hh
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQ-EIEPYLSGRCIYLVGMMGSGKTTVGKILS--GV 80 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl-~i~~~~~Ge~i~LiG~nGaGKSTLlk~La--g~ 80 (257)
.++++++++..+.+ |+++-- .|++ |++++|+||||||||||+++|+ ++
T Consensus 5 ~~~~~~~i~tg~~~---lD~~l~Ggi~~---G~~~~l~GpnGsGKSTLl~~i~~~~~ 55 (251)
T 2ehv_A 5 AYQPVRRVKSGIPG---FDELIEGGFPE---GTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp ---CCCEECCSCTT---TGGGTTTSEET---TCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cccccceeecCCHh---HHHHhcCCCCC---CcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 35777888776653 444411 7888 9999999999999999999999 65
No 98
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.35 E-value=1.1e-13 Score=124.82 Aligned_cols=133 Identities=15% Similarity=0.091 Sum_probs=82.2
Q ss_pred cccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhh-----h--------cC------CC-CC
Q 025114 45 KNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIE-----Q--------SV------DG-TS 100 (257)
Q Consensus 45 ~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~-----~--------~~------~~-~~ 100 (257)
.++||++++ |++++|+|||||||||+++.|+|++ |.+.+.+.+... + .. .+ ..
T Consensus 148 ~~l~l~~~~---g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRK---PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSS---SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCC---CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 578999999 9999999999999999999999987 445444432210 0 00 01 11
Q ss_pred ----HHHHHHHhCchHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCc--EEEEECCHHHH-----HH
Q 025114 101 ----VAEIFKLYGEGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGI--SVWLDVPLEAL-----AQ 165 (257)
Q Consensus 101 ----v~e~~~~~g~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~--vl~LDep~~~L-----~~ 165 (257)
+.+.+.... .+.....+++.+++.+ +.+.+|| +|+..+++++. +|. +++|| |++++ .+
T Consensus 225 p~~tv~e~l~~~~---~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~~ 297 (359)
T 2og2_A 225 AATVLSKAVKRGK---EEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAR 297 (359)
T ss_dssp HHHHHHHHHHHHH---HTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHH
T ss_pred hhhhHHHHHHHHH---hCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHH
Confidence 111111000 0000001122233322 4566677 78999998876 699 99999 99887 34
Q ss_pred HHHh-cCCCCccccCCCCCCchhh
Q 025114 166 RIAA-VGTDSRPLLHQCESGDAYT 188 (257)
Q Consensus 166 rl~~-~g~~~~~~~h~~~~~~~~~ 188 (257)
++.. .|.+.+.++|. +......
T Consensus 298 ~~~~~~g~t~iiiThl-D~~~~gG 320 (359)
T 2og2_A 298 EFNEVVGITGLILTKL-DGSARGG 320 (359)
T ss_dssp HHHHHTCCCEEEEESC-TTCSCTH
T ss_pred HHHHhcCCeEEEEecC-ccccccc
Confidence 4443 48888999994 6655554
No 99
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.35 E-value=3.1e-14 Score=143.52 Aligned_cols=137 Identities=11% Similarity=0.041 Sum_probs=80.9
Q ss_pred cceEEecc-----eeeee-CccccccccceEecCC----CCCcEEEEEcCCCChHHHHHHHHHhhhCC----c-eecchh
Q 025114 26 ASVLESGN-----VHAPI-DEAQVLKNKSQEIEPY----LSGRCIYLVGMMGSGKTTVGKILSGVLGY----S-FFDCDT 90 (257)
Q Consensus 26 ~~~l~~~~-----l~~~~-~~~~~l~~isl~i~~~----~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~----~-~~d~~~ 90 (257)
.++|+++| |++.| ++..+++|++|++.+. ..|++++|+|||||||||++|+| |++.. . ++..+.
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~~Vpq~~ 826 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGCYVPAEV 826 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHHHTTTCCEESSE
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHHhheeEEeccCc
Confidence 45799999 99999 7788999999998640 12699999999999999999999 87621 0 121111
Q ss_pred hhhhcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH---
Q 025114 91 LIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL--- 163 (257)
Q Consensus 91 ~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L--- 163 (257)
. ..++.+.+ +.+++..+ +....+++++.+ +.++..+. +|.+++||||+.++
T Consensus 827 ~------~l~v~d~I---------------~~rig~~d~~~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~ 884 (1022)
T 2o8b_B 827 C------RLTPIDRV---------------FTRLGASDRIMSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATF 884 (1022)
T ss_dssp E------EECCCSBE---------------EEECC---------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHH
T ss_pred C------CCCHHHHH---------------HHHcCCHHHHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChH
Confidence 0 11111100 00111111 122344555544 55554444 79999999996554
Q ss_pred ---------HHHHHhc-CCCCccccCCCCCCc
Q 025114 164 ---------AQRIAAV-GTDSRPLLHQCESGD 185 (257)
Q Consensus 164 ---------~~rl~~~-g~~~~~~~h~~~~~~ 185 (257)
++.+... |.+++.++|+.+.+.
T Consensus 885 dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~ 916 (1022)
T 2o8b_B 885 DGTAIANAVVKELAETIKCRTLFSTHYHSLVE 916 (1022)
T ss_dssp HHHHHHHHHHHHHHHTSCCEEEEECCCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence 4556555 888999999955433
No 100
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.34 E-value=6.1e-14 Score=112.45 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=46.5
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
++..++++.|+++.+++++||++++ |++++|+||||||||||+|+|+|.+
T Consensus 8 ~~~~~~~~~~g~~~~l~~vsl~i~~---Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 8 IPDEFSMLRFGKKFAEILLKLHTEK---AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHCCSS---CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhccccccCC---CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4456789999988999999999999 9999999999999999999999988
No 101
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.31 E-value=6.2e-13 Score=132.73 Aligned_cols=145 Identities=14% Similarity=0.083 Sum_probs=86.7
Q ss_pred eEEecceeeee-----CccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh-----CCceecchhhhhhcCC
Q 025114 28 VLESGNVHAPI-----DEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL-----GYSFFDCDTLIEQSVD 97 (257)
Q Consensus 28 ~l~~~~l~~~~-----~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l-----g~~~~d~~~~~~~~~~ 97 (257)
.+++++....+ ++..+++|++|++.+ |++++|+|||||||||++|+++... |. ++..+.. ..
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~---g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~-~vpa~~~---~~- 702 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDK---QMFHIITGPNMGGKSTYIRQTGVIVLMAQIGC-FVPCESA---EV- 702 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTT---BCEEEEECCTTSSHHHHHHHHHHHHHHHHHTC-CBSEEEE---EE-
T ss_pred ceEeecCccchhhhcCCceeecccceeecCC---CeEEEEECCCCCCHHHHHHHHHHHHHHHhcCC-ccccccc---cc-
Confidence 46666654443 345789999999999 9999999999999999999996432 21 1111100 00
Q ss_pred CCCHHHHHHHhCchHHHHHHHHHHHHhcccCccccccChhHhHHHHHHHHh---hCCcEEEEECCHHHH-----------
Q 025114 98 GTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYM---QKGISVWLDVPLEAL----------- 163 (257)
Q Consensus 98 ~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~~lsgG~~qr~~~a~~l---~~~~vl~LDep~~~L----------- 163 (257)
+. ..+++.+++..+.....+|+++.++..++.++ .+|.+++||||+.++
T Consensus 703 ~~-----------------~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~ 765 (934)
T 3thx_A 703 SI-----------------VDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWA 765 (934)
T ss_dssp EC-----------------CSEEEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHH
T ss_pred hH-----------------HHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHH
Confidence 00 00122233333344455677777777666655 479999999998776
Q ss_pred -HHHHHh-cCCCCccccCCCCCCchhhHHHHHHHHHHHHH
Q 025114 164 -AQRIAA-VGTDSRPLLHQCESGDAYTEALNRLSTLWEER 201 (257)
Q Consensus 164 -~~rl~~-~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r 201 (257)
++.+.. .|.+++.++|+.+. ..++ +++..+.+++
T Consensus 766 il~~l~~~~g~~vl~aTH~~el-~~la---d~~~~v~ng~ 801 (934)
T 3thx_A 766 ISEYIATKIGAFCMFATHFHEL-TALA---NQIPTVNNLH 801 (934)
T ss_dssp HHHHHHHTTCCEEEEEESCGGG-GGGG---GTCTTEEEEE
T ss_pred HHHHHHhcCCCEEEEEcCcHHH-HHHh---cccceeEeeE
Confidence 355554 48899999999543 3455 5544444443
No 102
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.29 E-value=2.1e-12 Score=105.38 Aligned_cols=173 Identities=18% Similarity=0.195 Sum_probs=92.6
Q ss_pred ccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhh-hCCceecchhhhhhcCCCCCHHHHHHHhCchHH-HHHHHHHHHH
Q 025114 46 NKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGV-LGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFF-REKETEVLQK 123 (257)
Q Consensus 46 ~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~-lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~-~~~~~~~l~~ 123 (257)
++|++... +.+++|+|++||||||+++.|+.. +|+.++|.|.+...........+.+ +.... +..+..+++.
T Consensus 2 ~~~~~~~~---~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~~~~~~~~~~---~~~~~~r~~~~~~~~~ 75 (184)
T 1y63_A 2 PGSMEQPK---GINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTEL---DTHIIEEKDEDRLLDF 75 (184)
T ss_dssp ----CCCS---SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTCSCC---------CCCCCHHHHHHHHHH
T ss_pred CcCcCCCC---CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhhhhhhHHHHh---hhcccCCCCHHHHHHH
Confidence 57888887 999999999999999999999998 7999999998876532111111111 11111 0111122222
Q ss_pred hcccCccccccChhHhHHHHHHHHhh---CCcEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHH
Q 025114 124 LSLMRQLVVSTGGGAVTRPINWRYMQ---KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEE 200 (257)
Q Consensus 124 l~~~~~~v~~lsgG~~qr~~~a~~l~---~~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~ 200 (257)
+. ..+.. +||.......+..+. ...+++|+.|.+.+.+|+..++.. ++...+ ... .+.+..++..
T Consensus 76 l~---~~~~~-~g~~vi~~~~~~~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~-~~~~~~-----~~~--~q~~~~l~~~ 143 (184)
T 1y63_A 76 ME---PIMVS-RGNHVVDYHSSELFPERWFHMVVVLHTSTEVLFERLTKRQYS-EAKRAE-----NME--AEIQCICEEE 143 (184)
T ss_dssp HH---HHHTS-SSEEEEECSCCTTSCGGGCSEEEEEECCHHHHHHHHHHTTCC-HHHHHH-----HHH--HHHTTHHHHH
T ss_pred HH---HHHhc-cCCEEEeCchHhhhhhccCCEEEEEECCHHHHHHHHHhCCCC-hhhhHh-----hHH--HHHHHHHHHH
Confidence 11 00001 111110000111121 246899999999999999876422 222111 000 0113444667
Q ss_pred HHHHHhcccceecchhhhhhccccCCCCCCHHHH---HHHHHHHHHhhhccc
Q 025114 201 RGEAYANANARVSLENIAVKLGHKDVSSLTPVTI---AIEALEQIEGFLKEE 249 (257)
Q Consensus 201 r~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~i~~~i~~~~~~~ 249 (257)
|...|. ++.++ ++++.+++++ +.++++.+..+...+
T Consensus 144 ~~~~y~-~~~vi------------~~n~~~~~~~~~~v~~i~~~l~~~~~~~ 182 (184)
T 1y63_A 144 ARDAYE-DDIVL------------VRENDTLEQMAATVEEIRERVEVLKVER 182 (184)
T ss_dssp HHHHSC-GGGEE------------EEECSSHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHhc-cCcEE------------ECCCCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 777776 34344 3456789999 777777777665544
No 103
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.28 E-value=1.1e-12 Score=128.62 Aligned_cols=125 Identities=12% Similarity=0.040 Sum_probs=79.9
Q ss_pred eEEecceeeee---CccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh-----CCceecchhhhhhcCCCC
Q 025114 28 VLESGNVHAPI---DEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL-----GYSFFDCDTLIEQSVDGT 99 (257)
Q Consensus 28 ~l~~~~l~~~~---~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l-----g~~~~d~~~~~~~~~~~~ 99 (257)
.|++++..... ++..+++|+||+ |++++|+|||||||||++|+|+|+. |.. +.... ... +.
T Consensus 550 ~i~i~~~rHP~le~~~~~vl~disl~------g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~-vpa~~---~~i-~~ 618 (765)
T 1ewq_A 550 RLQIRAGRHPVVERRTEFVPNDLEMA------HELVLITGPNMAGKSTFLRQTALIALLAQVGSF-VPAEE---AHL-PL 618 (765)
T ss_dssp SEEEEEECCTTGGGTSCCCCEEEEES------SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC-BSSSE---EEE-CC
T ss_pred cEEEEEeECceEccCCceEeeeccCC------CcEEEEECCCCCChHHHHHHHHhhhhhcccCce-eehhc---cce-ee
Confidence 46666665544 556789999998 6899999999999999999999975 211 11000 000 00
Q ss_pred CHHHHHHHhCchHHHHHHHHHHHHhcccCccccccChhHhHHHHHHHHh--h-CCcEEEEECC---HHHHH---------
Q 025114 100 SVAEIFKLYGEGFFREKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYM--Q-KGISVWLDVP---LEALA--------- 164 (257)
Q Consensus 100 ~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~~lsgG~~qr~~~a~~l--~-~~~vl~LDep---~~~L~--------- 164 (257)
- . +++..++..+.....+|+++.++..+++++ . +|.+++|||| |++++
T Consensus 619 v-~----------------~i~~~~~~~d~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~ 681 (765)
T 1ewq_A 619 F-D----------------GIYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVA 681 (765)
T ss_dssp C-S----------------EEEEECCC------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred H-H----------------HhhccCCHHHHHHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHH
Confidence 0 0 011122222233345688888988888776 4 6999999999 76653
Q ss_pred HHHHhcCCCCccccCC
Q 025114 165 QRIAAVGTDSRPLLHQ 180 (257)
Q Consensus 165 ~rl~~~g~~~~~~~h~ 180 (257)
+.+...|.+++.++|+
T Consensus 682 ~~L~~~g~~vl~~TH~ 697 (765)
T 1ewq_A 682 EALHERRAYTLFATHY 697 (765)
T ss_dssp HHHHHHTCEEEEECCC
T ss_pred HHHHhCCCEEEEEeCC
Confidence 3344457889999998
No 104
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.26 E-value=6.8e-12 Score=112.17 Aligned_cols=53 Identities=17% Similarity=0.066 Sum_probs=40.1
Q ss_pred ccccccChhHhHHH------HHHHHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCC
Q 025114 129 QLVVSTGGGAVTRP------INWRYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQC 181 (257)
Q Consensus 129 ~~v~~lsgG~~qr~------~~a~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~ 181 (257)
+++..||||++|++ .+++++. +|.+++||||+++| ++++...+.++++++||.
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~ 314 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE 314 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH
Confidence 56788999999954 4555554 69999999999988 233444567888999993
No 105
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.25 E-value=2.5e-12 Score=105.99 Aligned_cols=48 Identities=15% Similarity=0.197 Sum_probs=35.8
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
+|+++|+++.|+. .++++ |++.+ |..++|+|+||||||||++.|+|..
T Consensus 3 ~l~~~~~~~~~~~-~~l~~--~~~~~---~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 3 NLNYQQTHFVMSA-PDIRH--LPSDT---GIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp --------CEEEE-SSGGG--SSCSC---SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred chhhhhhhheeec-CCHhH--CCCCC---CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999974 68888 88898 9999999999999999999999865
No 106
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.24 E-value=2e-12 Score=127.43 Aligned_cols=130 Identities=13% Similarity=0.087 Sum_probs=76.7
Q ss_pred eEEecceeeee-----CccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh-----CCceecchhhhhhcCC
Q 025114 28 VLESGNVHAPI-----DEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL-----GYSFFDCDTLIEQSVD 97 (257)
Q Consensus 28 ~l~~~~l~~~~-----~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l-----g~~~~d~~~~~~~~~~ 97 (257)
.+.+++..... +++.+++|++|+ ++ |++++|+|||||||||++|+|+|+. |. ++.... ...
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~---g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~-~vpa~~---~~i- 647 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQ---RRMLIITGPNMGGKSTYMRQTALIALMAYIGS-YVPAQK---VEI- 647 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SS---SCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC-CBSSSE---EEE-
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CC---CcEEEEECCCCCChHHHHHHHHHHHHHHhcCc-ccchhc---ccc-
Confidence 45665543322 567799999999 88 9999999999999999999999964 21 111110 000
Q ss_pred CCCHHHHHHHhCchHHHHHHHHHHHHhcccC---ccccccChhHhHHHHHHHHhhCCcEEEEECCHHHH-----------
Q 025114 98 GTSVAEIFKLYGEGFFREKETEVLQKLSLMR---QLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEAL----------- 163 (257)
Q Consensus 98 ~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~~~~vl~LDep~~~L----------- 163 (257)
+. +..++ ..++..+ .....+++++.+...+...+.+|.+++||||+.++
T Consensus 648 ~~-~~~i~----------------~~~~~~d~l~~~~stf~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ 710 (800)
T 1wb9_A 648 GP-IDRIF----------------TRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWA 710 (800)
T ss_dssp CC-CCEEE----------------EEEC-----------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHH
T ss_pred ee-HHHHH----------------hhCCHHHHHHhhhhhhhHHHHHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHH
Confidence 00 00000 0011100 11223445555444444545589999999993332
Q ss_pred -HHHHHh-cCCCCccccCCCCC
Q 025114 164 -AQRIAA-VGTDSRPLLHQCES 183 (257)
Q Consensus 164 -~~rl~~-~g~~~~~~~h~~~~ 183 (257)
++.+.. .|.+++.++|+.+.
T Consensus 711 ll~~l~~~~g~~vl~~TH~~el 732 (800)
T 1wb9_A 711 CAENLANKIKALTLFATHYFEL 732 (800)
T ss_dssp HHHHHHHTTCCEEEEECSCGGG
T ss_pred HHHHHHhccCCeEEEEeCCHHH
Confidence 456665 48889999999653
No 107
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.23 E-value=6e-12 Score=110.02 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=35.9
Q ss_pred cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 41 AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 41 ~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
..+|+++++.+++ |++++|+||||||||||++.|++.+
T Consensus 22 ~~~Ld~i~~~l~~---G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 22 CTGINDKTLGARG---GEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CTTHHHHHCSBCT---TCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCC---CeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4589999999999 9999999999999999999999986
No 108
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.22 E-value=1.9e-11 Score=110.12 Aligned_cols=149 Identities=15% Similarity=0.082 Sum_probs=84.7
Q ss_pred cccccccce-------EecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCC----ceecchhhhhhcCCCCCHHHHHHHhC
Q 025114 41 AQVLKNKSQ-------EIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGY----SFFDCDTLIEQSVDGTSVAEIFKLYG 109 (257)
Q Consensus 41 ~~~l~~isl-------~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~----~~~d~~~~~~~~~~~~~v~e~~~~~g 109 (257)
...|+++.+ .+.+ |++++|+||||||||||+++|+|++.+ ..+...+..+.....
T Consensus 103 ~~~l~~lg~~~~l~~l~~~~---~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~----------- 168 (356)
T 3jvv_A 103 VLTMEELGMGEVFKRVSDVP---RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHES----------- 168 (356)
T ss_dssp CCCTTTTTCCHHHHHHHHCS---SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCC-----------
T ss_pred CCCHHHcCChHHHHHHHhCC---CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhc-----------
Confidence 345666665 5566 889999999999999999999998732 111111111100000
Q ss_pred chHHHHHHHHHHHHhcc-cCccccccChhHhHHHHHHHHhh-CCcEEEEECCHHHH----HHHHHhcCCCCccccCCCCC
Q 025114 110 EGFFREKETEVLQKLSL-MRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLEAL----AQRIAAVGTDSRPLLHQCES 183 (257)
Q Consensus 110 ~~~~~~~~~~~l~~l~~-~~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~~L----~~rl~~~g~~~~~~~h~~~~ 183 (257)
. .+. ....+.. ........++++|. +|+++++|||++.- +.+....|.++..++|+.+.
T Consensus 169 ~-------------~~~v~q~~~~~--~~~~~~~~La~aL~~~PdvillDEp~d~e~~~~~~~~~~~G~~vl~t~H~~~~ 233 (356)
T 3jvv_A 169 K-------------KCLVNQREVHR--DTLGFSEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSA 233 (356)
T ss_dssp S-------------SSEEEEEEBTT--TBSCHHHHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEESCSSH
T ss_pred c-------------ccceeeeeecc--ccCCHHHHHHHHhhhCcCEEecCCCCCHHHHHHHHHHHhcCCEEEEEEccChH
Confidence 0 000 0000000 00112236777776 79999999998532 33445568889999999665
Q ss_pred CchhhHHHHHHHHHHHH------HHHHHhcccceecchhhhhhcc
Q 025114 184 GDAYTEALNRLSTLWEE------RGEAYANANARVSLENIAVKLG 222 (257)
Q Consensus 184 ~~~~~~~~~~v~~l~~~------r~~~y~~~~~~~~~~~l~~~~~ 222 (257)
+ ..+ +|+..|..+ +....+....++....+...+|
T Consensus 234 ~-~~~---dRli~l~~~~~~~~~~~~la~~l~~vi~QrLv~~~~~ 274 (356)
T 3jvv_A 234 A-KTI---DRVVDVFPAEEKAMVRSMLSESLQSVISQTLIKKIGG 274 (356)
T ss_dssp H-HHH---HHHHHTSCHHHHHHHHHHHHHHEEEEEEEEEECC---
T ss_pred H-HHH---HHHhhhcCccccchHHHHHHHHhhheEEEEeeeecCC
Confidence 4 454 888777532 2233344555666555555554
No 109
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.22 E-value=7.7e-14 Score=121.24 Aligned_cols=121 Identities=15% Similarity=0.126 Sum_probs=67.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh----CCceecchhhhhh--------------cCCCCCHHHHHHHhC----chHHHHH
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTLIEQ--------------SVDGTSVAEIFKLYG----EGFFREK 116 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~~~~--------------~~~~~~v~e~~~~~g----~~~~~~~ 116 (257)
.++|+||||||||||+|+|+|+. |.+.+++.++... ....+++.+...... .... +.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~-~~ 82 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW-EP 82 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS-HH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH-HH
Confidence 48999999999999999999987 3333333322100 000112222111110 0001 11
Q ss_pred HHHHHHHhcccCccccccChhHhHHHHHHHHhhCCcEEEEECCHHHH-------HHHHHhcCCCCccccCCCCCC
Q 025114 117 ETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQKGISVWLDVPLEAL-------AQRIAAVGTDSRPLLHQCESG 184 (257)
Q Consensus 117 ~~~~l~~l~~~~~~v~~lsgG~~qr~~~a~~l~~~~vl~LDep~~~L-------~~rl~~~g~~~~~~~h~~~~~ 184 (257)
..+.+.. ...+..+..||||++||+.+++++. .+++||+|++++ ++++... .+++++.|..+..
T Consensus 83 i~~~~~~-~~~~~~~~~LS~G~~qrv~iaRal~--~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 83 IEKYINE-QYEKFLKEEVNIARKKRIPDTRVHC--CLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTM 153 (270)
T ss_dssp HHHHHHH-HHHHHHHHHSCTTCCSSCCCCSCCE--EEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGS
T ss_pred HHHHHHH-HHHhhhHHhcCcccchhhhhheeee--eeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccC
Confidence 1112210 1122567789999999999887655 588999887655 5666655 7788888875543
No 110
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.21 E-value=3e-10 Score=90.43 Aligned_cols=154 Identities=15% Similarity=0.119 Sum_probs=92.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHHHHHH--hcccCcc-----
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQK--LSLMRQL----- 130 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~--l~~~~~~----- 130 (257)
.+++|+|++||||||+++.|+..+++.+++.|.+..... .+..+|... +.+.. .-+.++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~---~~~~~~~~~----------~~l~~~~~vi~dr~~~~~~ 68 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS---GNEKLFEHF----------NKLADEDNVIIDRFVYSNL 68 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT---CHHHHHHHH----------HHHTTCCSEEEESCHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh---HHHHHHHHH----------HHHHhCCCeEEeeeecchH
Confidence 378999999999999999999999999999987655432 233333210 00100 0000010
Q ss_pred ccc-----cChhH-hHHHHHHHHhhC-CcEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHH
Q 025114 131 VVS-----TGGGA-VTRPINWRYMQK-GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGE 203 (257)
Q Consensus 131 v~~-----lsgG~-~qr~~~a~~l~~-~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~ 203 (257)
+.+ ++.-. ..+..+...+.. ..+++||.|.+.+.+|+..++ ++... .. ..+++...+..+..
T Consensus 69 v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~---r~~~~-----~~---~~~~~~~~~~~~~~ 137 (173)
T 3kb2_A 69 VYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRG---DEYIE-----GK---DIDSILELYREVMS 137 (173)
T ss_dssp HHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHS---CSCCC-----HH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcC---Ccchh-----hh---HHHHHHHHHHHHHh
Confidence 000 11100 111222222233 357899999999999998653 22111 11 23667777777777
Q ss_pred HHhcccceecchhhhhhccccCCCCCCHHHHHHHHHHHHHhhhc
Q 025114 204 AYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLK 247 (257)
Q Consensus 204 ~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 247 (257)
.|..+..++ +++..++++++.+|.+.+..+..
T Consensus 138 ~~~~~~~~i------------d~~~~~~~ev~~~I~~~~~~~~~ 169 (173)
T 3kb2_A 138 NAGLHTYSW------------DTGQWSSDEIAKDIIFLVELEHH 169 (173)
T ss_dssp TCSSCEEEE------------ETTTSCHHHHHHHHHHHHHHGGG
T ss_pred hcCCCEEEE------------ECCCCCHHHHHHHHHHHHhCCCc
Confidence 666444443 45557999999999999987654
No 111
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.17 E-value=6.6e-10 Score=92.17 Aligned_cols=166 Identities=14% Similarity=0.139 Sum_probs=95.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcC--CCCCHHHHHHHhCchH--HH------------------
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV--DGTSVAEIFKLYGEGF--FR------------------ 114 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~--~~~~v~e~~~~~g~~~--~~------------------ 114 (257)
.-+|+|.|++||||||+++.||..+|++|+|++ ++.... .|++. +.|...++.. |+
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D~~-~~~~~a~~~g~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYSKE-LLDEVAKDGRYSK-EVLERFDEKPMNFAFIPVPAGGTTISLEQDIA 83 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEECHH-HHHHTTCC----------------------------------CHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEECHH-HHHHHHHhcCCCH-HHHHHHhhhchhHHHHHhccccccccccHHHH
Confidence 458999999999999999999999999999944 443221 24553 3444444432 22
Q ss_pred HHHHHHHHHhc--ccCccccc-cChhHhHHHHHHHHhhCCcEEEEECCHHHHHHHHHhc-CCCCccccCCCCCCchhhHH
Q 025114 115 EKETEVLQKLS--LMRQLVVS-TGGGAVTRPINWRYMQKGISVWLDVPLEALAQRIAAV-GTDSRPLLHQCESGDAYTEA 190 (257)
Q Consensus 115 ~~~~~~l~~l~--~~~~~v~~-lsgG~~qr~~~a~~l~~~~vl~LDep~~~L~~rl~~~-g~~~~~~~h~~~~~~~~~~~ 190 (257)
..+.+++..+. .....|.. .+||.+.+. ..+...+||+.|.+...+|+... +. + ..+.
T Consensus 84 ~~~~~~i~~la~~~~~~~Vi~Gr~g~~vl~~-----~~~~~~V~L~A~~e~r~~R~~~~~~~---------~----~~~~ 145 (201)
T 3fdi_A 84 IRQFNFIRKKANEEKESFVIVGRCAEEILSD-----NPNMISAFILGDKDTKTKRVMEREGV---------D----EKTA 145 (201)
T ss_dssp HHHHHHHHHHHHTSCCCEEEESTTHHHHTTT-----CTTEEEEEEEECHHHHHHHHHHHHTC---------C----HHHH
T ss_pred HHHHHHHHHHHhhcCCCEEEEECCcchhcCC-----CCCeEEEEEECCHHHHHHHHHHHhCC---------C----HHHH
Confidence 34556666665 43344443 233322111 01256889999999999998753 21 1 1122
Q ss_pred HHHHHHHHHHHHHHHhcccceecchhhhhhcc-ccCCCCCCHHHHHHHHHHHHHh
Q 025114 191 LNRLSTLWEERGEAYANANARVSLENIAVKLG-HKDVSSLTPVTIAIEALEQIEG 244 (257)
Q Consensus 191 ~~~v~~l~~~r~~~y~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~i~~~i~~ 244 (257)
..++..+...|...|..... ..+... ..|. +++++..+++++++.|++.++.
T Consensus 146 ~~~i~~~d~~R~~~y~~~~~-~~~~~~-~~~dl~Idt~~l~~eevv~~I~~~i~~ 198 (201)
T 3fdi_A 146 LNMMKKMDKMRKVYHNFYCE-SKWGDS-RTYDICIKIGKVDVDTATDMIIKYIDS 198 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHCS-SCTTBG-GGCSEEEEESSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCCCCc-ccCCEEEECCCCCHHHHHHHHHHHHHH
Confidence 36677777788877765310 011111 1111 3578889999999999888753
No 112
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.16 E-value=1e-09 Score=87.08 Aligned_cols=160 Identities=19% Similarity=0.153 Sum_probs=87.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCC--C---CCHH----HHHHHhCchHHHHHHHHHHHHhcccCc
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVD--G---TSVA----EIFKLYGEGFFREKETEVLQKLSLMRQ 129 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~--~---~~v~----e~~~~~g~~~~~~~~~~~l~~l~~~~~ 129 (257)
+++|+|++||||||+++.| ..+|..+++.++.+..... + .... .++...+...+.....+.+.. . ...
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~ 79 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGT-S-NHD 79 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCS-C-CCS
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHh-c-CCC
Confidence 7899999999999999999 8889999987776654320 1 1111 222224444444444433321 1 112
Q ss_pred cccccCh-hHhHHHHHHHHhhCC-cEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHH--HH--H-
Q 025114 130 LVVSTGG-GAVTRPINWRYMQKG-ISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWE--ER--G- 202 (257)
Q Consensus 130 ~v~~lsg-G~~qr~~~a~~l~~~-~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~--~r--~- 202 (257)
.+..-+- ...+...+......| .+++||.|.+.+.+|+..++.. ..+. .. +.+...+. .+ .
T Consensus 80 ~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~---~~~~-----~~----~~~~~r~~~~~~~~~~ 147 (179)
T 3lw7_A 80 LVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRS---DDSK-----EI----SELIRRDREELKLGIG 147 (179)
T ss_dssp CEEEECCCCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC-------CC-----CH----HHHHHHHHHHHHHTHH
T ss_pred eEEEeCCCCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCC---CCcc-----hH----HHHHHHHHhhhccChH
Confidence 2222221 112222233333333 5889999999999999876422 1111 11 22222211 11 1
Q ss_pred HHHhcccceecchhhhhhccccCCCCCCHHHHHHHHHHHHHhhh
Q 025114 203 EAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFL 246 (257)
Q Consensus 203 ~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~~ 246 (257)
..+..++.++ +.+ .++++++.++.+.+..++
T Consensus 148 ~~~~~ad~vI------------d~~-~~~~~~~~~i~~~l~~~l 178 (179)
T 3lw7_A 148 EVIAMADYII------------TND-SNYEEFKRRCEEVTDRVL 178 (179)
T ss_dssp HHHHTCSEEE------------ECC-SCHHHHHHHHHHHHHHHC
T ss_pred hHHHhCCEEE------------ECC-CCHHHHHHHHHHHHHHHh
Confidence 1223344444 333 499999999988887654
No 113
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=99.15 E-value=4.9e-11 Score=113.14 Aligned_cols=161 Identities=17% Similarity=0.193 Sum_probs=81.1
Q ss_pred EecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC-----Cc-eecchhhhhhcCC--CCCHHHHHHHhCchHHHHHHHHHH
Q 025114 50 EIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG-----YS-FFDCDTLIEQSVD--GTSVAEIFKLYGEGFFREKETEVL 121 (257)
Q Consensus 50 ~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg-----~~-~~d~~~~~~~~~~--~~~v~e~~~~~g~~~~~~~~~~~l 121 (257)
.+.+ |++++|+|+||||||||+|+|++.++ .. ++|+|.+...... +.+..+. ...++ ....++
T Consensus 365 ~~~~---G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r-----~~~~r-~i~~v~ 435 (552)
T 3cr8_A 365 RERQ---GFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHR-----DVNVR-RIGFVA 435 (552)
T ss_dssp GGGS---CEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHH-----HHHHH-HHHHHH
T ss_pred cccc---ceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHH-----HHHHH-HHHHHH
Confidence 4667 99999999999999999999999984 23 6899887543211 2222111 01111 223333
Q ss_pred HHhcccCccccccChh--HhHHHHHHHHhhC-C--cEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHH
Q 025114 122 QKLSLMRQLVVSTGGG--AVTRPINWRYMQK-G--ISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLST 196 (257)
Q Consensus 122 ~~l~~~~~~v~~lsgG--~~qr~~~a~~l~~-~--~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~ 196 (257)
..+......+....++ ...+.....++.. + .+++||.|.+.+.+|.++ +.... .. ...+..
T Consensus 436 q~l~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~r------~l~~~---~~-----~~~i~~ 501 (552)
T 3cr8_A 436 SEITKNRGIAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDRK------GLYAK---AR-----AGLIPE 501 (552)
T ss_dssp HHHHHTTCEEEECCCCCCHHHHHHHHHHHHTTSEEEEEEECC--------------------------------------
T ss_pred HHHHhcCCEEEEecCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhccc------ccccc---cc-----HhHHHH
Confidence 4333333334443332 4445555566654 5 688999999999888652 11111 00 023444
Q ss_pred HHHHHHHHHh--cccceecchhhhhhccccCCCCCCHHHHHHHHHHHHHhh
Q 025114 197 LWEERGEAYA--NANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGF 245 (257)
Q Consensus 197 l~~~r~~~y~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~ 245 (257)
++..|...|. .++.+ ++++..++++++++|++.|.+.
T Consensus 502 l~~~r~~~e~P~~adl~------------Idt~~~s~~e~v~~Il~~L~~~ 540 (552)
T 3cr8_A 502 FTGVSDPYEVPETPELA------------IDTTGLAIDEAVQQILLKLEHE 540 (552)
T ss_dssp -----CCCCCCSSCSEE------------ECCSSCCHHHHHHHHHHHHHHH
T ss_pred HHhccccccCCCCCCEE------------EECCCCCHHHHHHHHHHHHHhc
Confidence 5555555443 23333 3677789999999999888643
No 114
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.14 E-value=6.5e-10 Score=90.49 Aligned_cols=171 Identities=16% Similarity=0.251 Sum_probs=93.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcC-C----CCCHHHHHHHhCchHHHHHHHHHH----HH-hcc
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-D----GTSVAEIFKLYGEGFFREKETEVL----QK-LSL 126 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~-~----~~~v~e~~~~~g~~~~~~~~~~~l----~~-l~~ 126 (257)
+.+++|+|++||||||+++.|+..+|..+++.+.+..... . +..+.+++. .|+..+.+.....+ .. +..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~~ 87 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIME-KGQLVPLETVLDMLRDAMVAKVNT 87 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHH-cCCcCCHHHHHHHHHHHHHhcccc
Confidence 7899999999999999999999999999999988765421 1 223334443 23322222222222 21 111
Q ss_pred cCccccc-cChhHhHHHHHHHHhhCC-cEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHH
Q 025114 127 MRQLVVS-TGGGAVTRPINWRYMQKG-ISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEA 204 (257)
Q Consensus 127 ~~~~v~~-lsgG~~qr~~~a~~l~~~-~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~ 204 (257)
....+.. ..-+..+...+...+..+ .+++||.|.+.+.+|+..++.. ..-..+ ....+ ..++...+..+.+.
T Consensus 88 ~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~-~~~~~~--~~~~~---~~r~~~~~~~~~~~ 161 (196)
T 2c95_A 88 SKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGET-SGRVDD--NEETI---KKRLETYYKATEPV 161 (196)
T ss_dssp CSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHTS-SSCGGG--SHHHH---HHHHHHHHHHTHHH
T ss_pred CCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCCc-CCCCCC--CHHHH---HHHHHHHHHHHHHH
Confidence 1111111 111222222222333444 5889999999999999765321 111111 01111 24454555544433
Q ss_pred ---HhcccceecchhhhhhccccCCCCCCHHHHHHHHHHHHHhh
Q 025114 205 ---YANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGF 245 (257)
Q Consensus 205 ---y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~ 245 (257)
|..++.++. ++. +.++++++.+|.+.+...
T Consensus 162 ~~~~~~~~~~~~----------Id~-~~~~e~v~~~i~~~l~~~ 194 (196)
T 2c95_A 162 IAFYEKRGIVRK----------VNA-EGSVDSVFSQVCTHLDAL 194 (196)
T ss_dssp HHHHHHHTCEEE----------EEC-CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcEEE----------EEC-CCCHHHHHHHHHHHHHHh
Confidence 443333221 233 378999999998887654
No 115
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.14 E-value=4.2e-10 Score=92.42 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=28.4
Q ss_pred ceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCceec
Q 025114 48 SQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFD 87 (257)
Q Consensus 48 sl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d 87 (257)
|+++.+ |++++|+||||||||||+++|+|++....++
T Consensus 1 s~~m~~---g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~ 37 (205)
T 3tr0_A 1 SNAMNK---ANLFIISAPSGAGKTSLVRALVKALAEIKIS 37 (205)
T ss_dssp ----CC---CCEEEEECCTTSCHHHHHHHHHHHSSSEEEC
T ss_pred CCcCCC---CcEEEEECcCCCCHHHHHHHHHhhCCCeEEe
Confidence 566777 9999999999999999999999987543333
No 116
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.14 E-value=3.4e-10 Score=93.19 Aligned_cols=155 Identities=21% Similarity=0.223 Sum_probs=83.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcC-----CCCCHHHHHHHhCchHHHHHHHHHHHHhcccCccc
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-----DGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLV 131 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~-----~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v 131 (257)
..+++|+|++||||||+++.|++.+|..++++|.+..... .+....+.. ....+ .... +.+......+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g~~~~~~~---~~~~~-~~l~---~~~~~~~~vi 90 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIPLTDDD---RWPWL-AAIG---ERLASREPVV 90 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHTCCCCHHH---HHHHH-HHHH---HHHTSSSCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcCCCCCchh---hHHHH-HHHH---HHHhcCCCEE
Confidence 4589999999999999999999999999999987642110 011100000 00011 1111 1121112334
Q ss_pred cccChhHh-HHHHHHHHhhC-CcEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHhc-c
Q 025114 132 VSTGGGAV-TRPINWRYMQK-GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYAN-A 208 (257)
Q Consensus 132 ~~lsgG~~-qr~~~a~~l~~-~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~~-~ 208 (257)
...+.+.. .+..+...... ..+++||.|.+.+.+|+..++.... + . +.+...+..+...+.. +
T Consensus 91 vd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~------~-----~---~~~~~~~~~~~~~~~~~~ 156 (202)
T 3t61_A 91 VSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFM------P-----S---SLLQTQLETLEDPRGEVR 156 (202)
T ss_dssp EECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSCC------C-----H---HHHHHHHHHCCCCTTSTT
T ss_pred EECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccCC------C-----H---HHHHHHHHhcCCCCCCCC
Confidence 44443322 22222222222 3688999999999999986532110 1 0 2232233222222222 1
Q ss_pred cceecchhhhhhccccCCCCCCHHHHHHHHHHHHHhh
Q 025114 209 NARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGF 245 (257)
Q Consensus 209 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~ 245 (257)
..+ ++++ .++++++++|.+.|.+.
T Consensus 157 ~~~------------Id~~-~~~~e~~~~I~~~l~~~ 180 (202)
T 3t61_A 157 TVA------------VDVA-QPLAEIVREALAGLARL 180 (202)
T ss_dssp EEE------------EESS-SCHHHHHHHHHHHHHHH
T ss_pred eEE------------EeCC-CCHHHHHHHHHHHHHHh
Confidence 222 3455 89999999998888643
No 117
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.13 E-value=3.5e-11 Score=97.33 Aligned_cols=153 Identities=22% Similarity=0.321 Sum_probs=90.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCchH---------HHHHHHHHHHHhccc
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGF---------FREKETEVLQKLSLM 127 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~---------~~~~~~~~l~~l~~~ 127 (257)
+.+++|+|++||||||+++.|+..++..+++.+.++.... . +...++.. .......++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 79 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQ-L------YDGYDEEYDCPILDEDRVVDELDNQMRE---- 79 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHT-C------EEEEETTTTEEEECHHHHHHHHHHHHHH----
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcc-h------hhhhhhhhcCccCChHHHHHHHHHHHhc----
Confidence 7789999999999999999999999999999988765431 0 00001110 11111112221
Q ss_pred CccccccChhHhHHHHHHHHhh---CCcEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHH
Q 025114 128 RQLVVSTGGGAVTRPINWRYMQ---KGISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEA 204 (257)
Q Consensus 128 ~~~v~~lsgG~~qr~~~a~~l~---~~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~ 204 (257)
...+..... ...+. ...+++||.|.+.+.+|+..++. .++...+ . ...+.+..++..|...
T Consensus 80 g~~vv~~~~--------~~~~~~~~~~~vi~L~~~~e~l~~R~~~r~~-~~~~~~~-----~--~~~~~~~~~~~~~~~~ 143 (180)
T 3iij_A 80 GGVIVDYHG--------CDFFPERWFHIVFVLRTDTNVLYERLETRGY-NEKKLTD-----N--IQCEIFQVLYEEATAS 143 (180)
T ss_dssp CCEEEECSC--------CTTSCGGGCSEEEEEECCHHHHHHHHHHTTC-CHHHHHH-----H--HHHHHTTHHHHHHHHH
T ss_pred CCEEEEech--------hhhcchhcCCEEEEEECCHHHHHHHHHHcCC-CHHHHHH-----H--HHHHHHHHHHHHHHHH
Confidence 111111000 01111 24689999999999999987642 2222111 0 0114456677788888
Q ss_pred HhcccceecchhhhhhccccCCCCCCHHHH---HHHHHHHHHhhhccc
Q 025114 205 YANANARVSLENIAVKLGHKDVSSLTPVTI---AIEALEQIEGFLKEE 249 (257)
Q Consensus 205 y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~i~~~i~~~~~~~ 249 (257)
|. ++.++ +++..+++++ +.++++.|..+...+
T Consensus 144 y~-~~~~i------------~~~~~~~~ev~~~v~~i~~~l~~~~~~~ 178 (180)
T 3iij_A 144 YK-EEIVH------------QLPSNKPEELENNVDQILKWIEQWIKDH 178 (180)
T ss_dssp SC-GGGEE------------EEECSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cC-CCeEE------------EcCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 87 34444 4566899999 777777777665433
No 118
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.13 E-value=5.4e-10 Score=90.42 Aligned_cols=112 Identities=21% Similarity=0.283 Sum_probs=68.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcC-C----CCCHHHHHHHhCchHHHHHHHHHHHHhcccCccc
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-D----GTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLV 131 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~-~----~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v 131 (257)
|.+++|+|++||||||+++.|+..+|..+++.++++.... . +..+.+++.. +...++....+++...-. +..+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~l~-~~~i 81 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMER-GDLVPDDLILELIREELA-ERVI 81 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHT-TCCCCHHHHHHHHHHHCC-SEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHhc-CCEE
Confidence 7899999999999999999999999999999987765431 1 2233444443 333344444444443211 1111
Q ss_pred cc-cChhHhHHHHHHHHhh----CC-cEEEEECCHHHHHHHHHhc
Q 025114 132 VS-TGGGAVTRPINWRYMQ----KG-ISVWLDVPLEALAQRIAAV 170 (257)
Q Consensus 132 ~~-lsgG~~qr~~~a~~l~----~~-~vl~LDep~~~L~~rl~~~ 170 (257)
.. ...+..+...+..++. .+ .+++||.|.+.+.+|+..+
T Consensus 82 ~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R 126 (186)
T 3cm0_A 82 FDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRR 126 (186)
T ss_dssp EESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhc
Confidence 11 1112222222222332 13 5789999999999998754
No 119
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.13 E-value=2.1e-10 Score=93.33 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=32.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhC-Cceecchhhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLG-YSFFDCDTLIE 93 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg-~~~~d~~~~~~ 93 (257)
|++++|+||||||||||+|+|++.++ ..+++++.+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~ 39 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINH 39 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhh
Confidence 68999999999999999999999775 47888887654
No 120
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.12 E-value=9.2e-11 Score=101.70 Aligned_cols=126 Identities=18% Similarity=0.143 Sum_probs=75.1
Q ss_pred ecCCCCCcEEEEEcCCCChHHHHHHHHHhhh--CCceecc-----hhhhhhcCCCCCHHHHH---HHhCchHHHHHHHHH
Q 025114 51 IEPYLSGRCIYLVGMMGSGKTTVGKILSGVL--GYSFFDC-----DTLIEQSVDGTSVAEIF---KLYGEGFFREKETEV 120 (257)
Q Consensus 51 i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l--g~~~~d~-----~~~~~~~~~~~~v~e~~---~~~g~~~~~~~~~~~ 120 (257)
+++ |++++|+||||||||||++.+++.+ |.++... ....--.. ..+...+. ...+.........++
T Consensus 27 l~~---G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~-e~~~~~~~~r~~~~g~~~~~~~~~~~ 102 (279)
T 1nlf_A 27 MVA---GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPA-EDPPTAIHHRLHALGAHLSAEERQAV 102 (279)
T ss_dssp EET---TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEES-SSCHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred ccC---CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEEC-CCCHHHHHHHHHHHHhhcChhhhhhc
Confidence 667 9999999999999999999999865 3222110 00000001 12222221 111111111223445
Q ss_pred HHHhcccC---ccccccChhHhHHHHHHHHhhCCcEEEEECCHH--HH--------------HHHHH-hcCCCCccccCC
Q 025114 121 LQKLSLMR---QLVVSTGGGAVTRPINWRYMQKGISVWLDVPLE--AL--------------AQRIA-AVGTDSRPLLHQ 180 (257)
Q Consensus 121 l~~l~~~~---~~v~~lsgG~~qr~~~a~~l~~~~vl~LDep~~--~L--------------~~rl~-~~g~~~~~~~h~ 180 (257)
++.+.+.+ +.+..+|+|+.+++. .++.+|++++||+|++ .+ +.++. ..|.+++.++|+
T Consensus 103 ~~~l~l~~~~~~~~~~ls~g~~~~i~--~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~ 180 (279)
T 1nlf_A 103 ADGLLIQPLIGSLPNIMAPEWFDGLK--RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 180 (279)
T ss_dssp HHHEEECCCTTSCCCTTSHHHHHHHH--HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred cCceEEeecCCCCcccCCHHHHHHHH--HhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 67776643 578889999877542 3445799999999998 32 34443 348889999998
Q ss_pred CC
Q 025114 181 CE 182 (257)
Q Consensus 181 ~~ 182 (257)
..
T Consensus 181 ~~ 182 (279)
T 1nlf_A 181 SK 182 (279)
T ss_dssp --
T ss_pred CC
Confidence 43
No 121
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.12 E-value=8.6e-10 Score=93.03 Aligned_cols=156 Identities=24% Similarity=0.232 Sum_probs=98.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhh--cCCCCCHHHHHHHhCch-----------------------
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQ--SVDGTSVAEIFKLYGEG----------------------- 111 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~--~~~~~~v~e~~~~~g~~----------------------- 111 (257)
.-+|+|.|+.||||||+++.|+..+|++++|++.+.+. .. |++.. .+...++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~~~a~~~-g~~~~-~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~ 91 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKLASEKS-AVGEQ-FFRLADEKAGNNLLYRLGGGRKIDLHSKPSP 91 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHCC--------------------------------------
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHHHHHHHHc-CCCHH-HHHHHHhhccccHHHHHhccccccccccccc
Confidence 35799999999999999999999999999997654321 11 33321 11111110
Q ss_pred --------HHHHHHHHHHHHhcccCccccc-cChhHhHHHHHHHHhh---CCcEEEEECCHHHHHHHHHhc-CCCCcccc
Q 025114 112 --------FFREKETEVLQKLSLMRQLVVS-TGGGAVTRPINWRYMQ---KGISVWLDVPLEALAQRIAAV-GTDSRPLL 178 (257)
Q Consensus 112 --------~~~~~~~~~l~~l~~~~~~v~~-lsgG~~qr~~~a~~l~---~~~vl~LDep~~~L~~rl~~~-g~~~~~~~ 178 (257)
.....+.+++..+......|.. .+||.+.+ .+. +...+||+.|.+...+|+... +. +.
T Consensus 92 ~~~~~~~~~~f~~~~~~i~~la~~~~~Vi~Grggg~vl~-----~~~~~~~~~~VfL~A~~e~r~~Ri~~~~~~---~~- 162 (223)
T 3hdt_A 92 NDKLTSPENLFKFQSEVMRELAESEPCIFVGRAAGYVLD-----QDEDIERLIRIFVYTDKVKKVQRVMEVDCI---DE- 162 (223)
T ss_dssp ------HHHHHHHHHHHHHHHHHHSCEEEESTTHHHHHH-----HCTTCCEEEEEEEECCHHHHHHHHHHHHTC---CH-
T ss_pred ccccccHHHHHHHHHHHHHHHHhCCCEEEEeCCcchhcc-----cccCCCCeEEEEEECCHHHHHHHHHHhcCC---CH-
Confidence 0012233455555544445544 67776543 112 246889999999999999753 21 11
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHh-----------cccceecchhhhhhccccCCCCCCHHHHHHHHHHHHHh
Q 025114 179 HQCESGDAYTEALNRLSTLWEERGEAYA-----------NANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEG 244 (257)
Q Consensus 179 h~~~~~~~~~~~~~~v~~l~~~r~~~y~-----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~ 244 (257)
.+...++..+...|...|. .++.+ ++++..+++++++.|++.++.
T Consensus 163 ---------~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~------------IdT~~l~~eevv~~I~~~i~~ 218 (223)
T 3hdt_A 163 ---------ERAKRRIKKIEKERKEYYKYFTGSEWHSMKNYDLP------------INTTKLTLEETAELIKAYIRL 218 (223)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEE------------EECTTCCHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCeEE------------EECCCCCHHHHHHHHHHHHHH
Confidence 1234677788888888886 23333 478889999999999888763
No 122
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.11 E-value=8.6e-11 Score=98.01 Aligned_cols=47 Identities=23% Similarity=0.302 Sum_probs=35.1
Q ss_pred EEecceeeeeCccccccccc-eEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 29 LESGNVHAPIDEAQVLKNKS-QEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~is-l~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
+++++++..+.. |+.+- =.|++ |++++|+||||||||||+++|+|.+
T Consensus 2 ~~~~~i~tG~~~---LD~~l~ggi~~---G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 2 ATIGRISTGSKS---LDKLLGGGIET---QAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp CCCCEECCSCHH---HHHHTTSSEES---SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcCCccCCCChh---HHhHhcCCCCC---CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345566655533 33322 26888 9999999999999999999999955
No 123
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.11 E-value=9.9e-11 Score=94.16 Aligned_cols=116 Identities=21% Similarity=0.199 Sum_probs=65.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhhhCCceec--chhhhhhcCC-------CCCHHHHHHHhCchHHHHHHHHH---HHH
Q 025114 56 SGRCIYLVGMMGSGKTTVGKILSGVLGYSFFD--CDTLIEQSVD-------GTSVAEIFKLYGEGFFREKETEV---LQK 123 (257)
Q Consensus 56 ~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d--~~~~~~~~~~-------~~~v~e~~~~~g~~~~~~~~~~~---l~~ 123 (257)
.+.++.|+|++||||||+++.|+..++..+++ .|.+.+.... +.++.+.+...++..|+..+..+ +..
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVA 81 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHHHHH
Confidence 47789999999999999999999999876664 6655443221 11111111111223344333222 222
Q ss_pred hcccC-ccccccC--hhHhHHHHHHHHhhC-C-cEEEEECCHHHHHHHHHhcC
Q 025114 124 LSLMR-QLVVSTG--GGAVTRPINWRYMQK-G-ISVWLDVPLEALAQRIAAVG 171 (257)
Q Consensus 124 l~~~~-~~v~~ls--gG~~qr~~~a~~l~~-~-~vl~LDep~~~L~~rl~~~g 171 (257)
+.... ..+.... .+...+..+.+.+.. + .+++|+.|.+.+.+|+..++
T Consensus 82 ~~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r~ 134 (178)
T 1qhx_A 82 MARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARG 134 (178)
T ss_dssp HHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTS
T ss_pred HHhcCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhhC
Confidence 21112 2333332 233334444555553 4 46779999999999998654
No 124
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.10 E-value=6.6e-13 Score=117.03 Aligned_cols=40 Identities=25% Similarity=0.248 Sum_probs=21.9
Q ss_pred cceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhh
Q 025114 32 GNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 32 ~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
+||++.|+++.++++++|+| +|+|+||||||||++.|+|.
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I---------~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL---------MVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp ----------------CEEE---------EEEEETTSSHHHHHHHHHC-
T ss_pred CCCcceECCEEEEcCCCEEE---------EEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999986 79999999999999999986
No 125
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.09 E-value=5.7e-10 Score=92.03 Aligned_cols=53 Identities=30% Similarity=0.560 Sum_probs=40.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcC--CCCCHHHHHHHhCch
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV--DGTSVAEIFKLYGEG 111 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~--~~~~v~e~~~~~g~~ 111 (257)
.+++|+|+|||||||++++|++ +|.+++|+|.+..... .+..+.+++..+|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~ 57 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQ 57 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTT
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHH
Confidence 3699999999999999999999 8999999998765432 122345566555543
No 126
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.07 E-value=8.9e-11 Score=97.82 Aligned_cols=39 Identities=26% Similarity=0.170 Sum_probs=35.1
Q ss_pred ccccccccce-EecCCCCCcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 40 EAQVLKNKSQ-EIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 40 ~~~~l~~isl-~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
+...|+++.. .+++ |++++|+||||||||||++.|++.+
T Consensus 8 g~~~Ld~~~~ggi~~---G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQ---GFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp SCHHHHGGGTTSEET---TCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CchHHHHHhcCCCcC---CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3567899988 8999 9999999999999999999999765
No 127
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.07 E-value=1.6e-09 Score=90.39 Aligned_cols=113 Identities=14% Similarity=0.133 Sum_probs=67.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCC-----CCHHHHHHHhCchHHHHHHHHHHHH-hc----c
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDG-----TSVAEIFKLYGEGFFREKETEVLQK-LS----L 126 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~-----~~v~e~~~~~g~~~~~~~~~~~l~~-l~----~ 126 (257)
|.+|+|+|++||||||+++.|+..++..+++.|+++.....+ ..+.+++.. |...+++....++.. +. .
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~~~ 82 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQ-GGLVSDDIMVNMIKDELTNNPAC 82 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHCGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHC-CCcCCHHHHHHHHHHHHHhcccc
Confidence 778999999999999999999999999999998877653212 223344432 332233333333322 21 1
Q ss_pred cCccccc-cChhHhHHHHHHHHhh----CC-cEEEEECCHHHHHHHHHhc
Q 025114 127 MRQLVVS-TGGGAVTRPINWRYMQ----KG-ISVWLDVPLEALAQRIAAV 170 (257)
Q Consensus 127 ~~~~v~~-lsgG~~qr~~~a~~l~----~~-~vl~LDep~~~L~~rl~~~ 170 (257)
....+.. ......|...+...+. .| .+++||.|.+.+.+|+..+
T Consensus 83 ~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r 132 (220)
T 1aky_A 83 KNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGR 132 (220)
T ss_dssp GSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTE
T ss_pred CCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCC
Confidence 1111211 1112223222222321 35 5889999999999999754
No 128
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.06 E-value=9.9e-10 Score=91.79 Aligned_cols=181 Identities=15% Similarity=0.145 Sum_probs=95.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCC-----CCCHHHHHHHhCchH----HHHHH-HHHHHHhcc
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVD-----GTSVAEIFKLYGEGF----FREKE-TEVLQKLSL 126 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~-----~~~v~e~~~~~g~~~----~~~~~-~~~l~~l~~ 126 (257)
+.+|+|+|++||||||+++.|+..++..+++.++++..... |..+.+++.. |+.. +.... ..+......
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~ 83 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEK-GQLVPDEIVVNMVKERLRQPDAQ 83 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHSHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHc-CCcCCHHHHHHHHHHHHhhcccc
Confidence 67899999999999999999999999999998887654211 2334444432 2211 21111 111110000
Q ss_pred cCccccc-cChhHhHHHHHHHHhhC-CcEEEEECCHHHHHHHHHhcCCC---C----------------ccccCC-CCCC
Q 025114 127 MRQLVVS-TGGGAVTRPINWRYMQK-GISVWLDVPLEALAQRIAAVGTD---S----------------RPLLHQ-CESG 184 (257)
Q Consensus 127 ~~~~v~~-lsgG~~qr~~~a~~l~~-~~vl~LDep~~~L~~rl~~~g~~---~----------------~~~~h~-~~~~ 184 (257)
....+.. ......+...+...... ..+++||.|.+.+.+|+..++.. - .++... .+..
T Consensus 84 ~~~~vidg~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~~d~~ 163 (222)
T 1zak_A 84 ENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTE 163 (222)
T ss_dssp HTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCCTTCCT
T ss_pred CCcEEEECCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccCCCCCH
Confidence 1122221 11111111111111112 35889999999999999754210 0 011110 0111
Q ss_pred chhhHHHHHHHHHHHHHHHHHhccc-ceecchhhhhhccccCCCCCCHHHHHHHHHHHHHhhhcccchh
Q 025114 185 DAYTEALNRLSTLWEERGEAYANAN-ARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLKEEDDM 252 (257)
Q Consensus 185 ~~~~~~~~~v~~l~~~r~~~y~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ 252 (257)
..+ ..|+...+..+.+.+...+ .++ .++. +.++++++.+|.+.+...+..+.+|
T Consensus 164 ~~i---~~Rl~~~~~~~~~l~~~y~~~~~----------~Id~-~~~~~ev~~~I~~~l~~~l~~~~~~ 218 (222)
T 1zak_A 164 EKV---KLRLETYYQNIESLLSTYENIIV----------KVQG-DATVDAVFAKIDELLGSILEKKNEM 218 (222)
T ss_dssp THH---HHHHHHHHHHHHHHHHTTCCCEE----------EEEC-SSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHhcEE----------EEEC-CCCHHHHHHHHHHHHHhhccccccc
Confidence 111 1344445555544332211 112 1244 5799999999999999888766665
No 129
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.06 E-value=3e-10 Score=93.52 Aligned_cols=51 Identities=33% Similarity=0.519 Sum_probs=39.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCC--CCCHHHHHHHhCc
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVD--GTSVAEIFKLYGE 110 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~--~~~v~e~~~~~g~ 110 (257)
+++|+|+|||||||+++.|++ +|..+++.|.+....+. +..+.+++...|+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~ 55 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGK 55 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCT
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCH
Confidence 699999999999999999999 89999999988765431 2234455555553
No 130
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.06 E-value=4.8e-12 Score=104.25 Aligned_cols=31 Identities=42% Similarity=0.499 Sum_probs=27.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhh---CCceecc
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVL---GYSFFDC 88 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~l---g~~~~d~ 88 (257)
|++++|+||||||||||+++|+|++ | ..+++
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~~~G-i~~~g 34 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLKSSG-VPVDG 34 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHHHTT-CCCEE
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcccCC-EEEcC
Confidence 6889999999999999999999988 6 44444
No 131
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.05 E-value=2e-09 Score=91.46 Aligned_cols=36 Identities=22% Similarity=0.305 Sum_probs=30.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLI 92 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~ 92 (257)
+++++|+||||||||||+++|+..+|...++.+.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~ 62 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFL 62 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHH
Confidence 689999999999999999999977777666665554
No 132
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.03 E-value=7.9e-11 Score=98.79 Aligned_cols=124 Identities=10% Similarity=0.086 Sum_probs=61.9
Q ss_pred cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh-CCceecchhhhhh--------cC--CCCCHHHHHHH--
Q 025114 41 AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL-GYSFFDCDTLIEQ--------SV--DGTSVAEIFKL-- 107 (257)
Q Consensus 41 ~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l-g~~~~d~~~~~~~--------~~--~~~~v~e~~~~-- 107 (257)
...|+||||+|++ |++++|+||||||||||+++|+|++ |...+ +...... .. ...+...+-..
T Consensus 10 ~~~l~~isl~i~~---G~~~~lvGpsGsGKSTLl~~L~g~~pG~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (218)
T 1z6g_A 10 HSSGLVPRGSMNN---IYPLVICGPSGVGKGTLIKKLLNEFPNYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85 (218)
T ss_dssp ------------C---CCCEEEECSTTSSHHHHHHHHHHHSTTTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred cccccCCceecCC---CCEEEEECCCCCCHHHHHHHHHhhCCCcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence 3469999999999 9999999999999999999999987 23433 2111000 00 00111111110
Q ss_pred ----------hCch--HHHHHHHHHHHHhcccCccccccChhHhHHHHHHHHhhCCcEEEEEC-CHHHHHHHHHhcC
Q 025114 108 ----------YGEG--FFREKETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQKGISVWLDV-PLEALAQRIAAVG 171 (257)
Q Consensus 108 ----------~g~~--~~~~~~~~~l~~l~~~~~~v~~lsgG~~qr~~~a~~l~~~~vl~LDe-p~~~L~~rl~~~g 171 (257)
.+.. .......++++..... -....+|||++||..++ ..+|..++++. |...|.+++...+
T Consensus 86 ~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~-il~~~lsggq~qR~~i~--~~~~~~~ll~~~~~~~Lde~~~~~d 159 (218)
T 1z6g_A 86 NEDFLEYDNYANNFYGTLKSEYDKAKEQNKIC-LFEMNINGVKQLKKSTH--IKNALYIFIKPPSTDVLLSRLLTRN 159 (218)
T ss_dssp TTCEEEEEEETTEEEEEEHHHHHHHHHTTCEE-EEEECHHHHHHHTTCSS--CCSCEEEEEECSCHHHHHHHHHHTC
T ss_pred ccchhhhhhcccccCCCcHHHHHHHHhCCCcE-EEEecHHHHHHHHHHhc--CCCcEEEEEeCcCHHHHHHHHHhcC
Confidence 0000 0122334455543221 11256799999997653 13456666764 5677788887654
No 133
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.02 E-value=3.7e-09 Score=88.19 Aligned_cols=113 Identities=14% Similarity=0.214 Sum_probs=70.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcC-----CCCCHHHHHHHhCchHHHHHHHHHHHH-hcc---c
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-----DGTSVAEIFKLYGEGFFREKETEVLQK-LSL---M 127 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~-----~~~~v~e~~~~~g~~~~~~~~~~~l~~-l~~---~ 127 (257)
+.+|+|+|++||||||+++.|+..+|..+++.|+++.... .+..+.+++.. |+..+++...+++.. +.. .
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~-g~~~~~~~~~~~i~~~l~~~~~~ 83 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIES-GNFVGDEIVLGLVKEKFDLGVCV 83 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHH-TCCCCHHHHHHHHHHHHHTTTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHC-CCcCCHHHHHHHHHHHHhccccC
Confidence 6789999999999999999999999999999988876542 14456666654 433344444443322 211 1
Q ss_pred Cccccc-cChhHhHHHHHHHHhh----CC-cEEEEECCHHHHHHHHHhc
Q 025114 128 RQLVVS-TGGGAVTRPINWRYMQ----KG-ISVWLDVPLEALAQRIAAV 170 (257)
Q Consensus 128 ~~~v~~-lsgG~~qr~~~a~~l~----~~-~vl~LDep~~~L~~rl~~~ 170 (257)
...+.. ......|...+...+. .| .+++||.|.+.+.+|+..+
T Consensus 84 ~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R 132 (217)
T 3be4_A 84 NGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGR 132 (217)
T ss_dssp TCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTE
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence 111111 1111122222222221 34 6889999999999999754
No 134
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.00 E-value=3.5e-09 Score=88.80 Aligned_cols=113 Identities=18% Similarity=0.206 Sum_probs=66.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCC-----CCCHHHHHHHhCchHHHHHHHH-HHHHhcc--cC
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVD-----GTSVAEIFKLYGEGFFREKETE-VLQKLSL--MR 128 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~-----~~~v~e~~~~~g~~~~~~~~~~-~l~~l~~--~~ 128 (257)
+.+++|+|++||||||+++.|+..+|..+++.++++..... +..+.+++.. |...+++.... +.+.+.. ..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~~~~~l~~~~~~ 85 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQ-GKLIPDDVMTRLALHELKNLTQY 85 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTT-TCCCCHHHHHHHHHHHHHTCTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHHhcccCC
Confidence 67899999999999999999999999999998877654321 1223333322 32223332222 2233321 11
Q ss_pred ccccccChhHhHHHHHHHHhhC-CcEEEEECCHHHHHHHHHhc
Q 025114 129 QLVVSTGGGAVTRPINWRYMQK-GISVWLDVPLEALAQRIAAV 170 (257)
Q Consensus 129 ~~v~~lsgG~~qr~~~a~~l~~-~~vl~LDep~~~L~~rl~~~ 170 (257)
..+..-.++..........+.. ..+++||.|.+.+.+|+..+
T Consensus 86 ~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~~~R~~~R 128 (227)
T 1zd8_A 86 SWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTAR 128 (227)
T ss_dssp CEEEESCCCSHHHHHHHHTTSCCCEEEEEECCHHHHHHHHTCE
T ss_pred CEEEeCCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHcC
Confidence 2232222222211111222233 46889999999999999754
No 135
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.99 E-value=2.4e-11 Score=108.64 Aligned_cols=53 Identities=17% Similarity=0.200 Sum_probs=49.7
Q ss_pred cceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 26 ASVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 26 ~~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
+++++++++++.|+.+.+|+++||++.+ |++++|+|+||||||||+++|+|++
T Consensus 27 i~~ie~~~~~~~~~~~~~l~~i~~~~~~---g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 27 ITLAESRRADHRAAVRDLIDAVLPQTGR---AIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHGGGCCC---SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHeeCCcccccChHHHHHhCCcccCC---CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3468999999999888899999999999 9999999999999999999999886
No 136
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.96 E-value=4.4e-11 Score=105.56 Aligned_cols=51 Identities=20% Similarity=0.179 Sum_probs=46.7
Q ss_pred ceEEecceeeeeCccccccccceEe-------------------cCCCCCcEEEEEcCCCChHHHHHHHHHhhhC
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEI-------------------EPYLSGRCIYLVGMMGSGKTTVGKILSGVLG 82 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i-------------------~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg 82 (257)
.+|+++||++.|+ ++++++++.+ .+ |++++|+||||||||||+++|+|+++
T Consensus 36 ~~i~~~~v~~~y~--~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~---g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 36 EDLSLEEVAEIYL--PLSRLLNFYISSNLRRQAVLEQFLGTNGQRI---PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp TTCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCC---CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred cccchHhHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHhccCCCCC---CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3689999999994 7899999988 77 99999999999999999999999876
No 137
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.95 E-value=1.2e-10 Score=106.99 Aligned_cols=50 Identities=24% Similarity=0.323 Sum_probs=41.5
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcE--EEEEcCCCChHHHHHHHHHhhh
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRC--IYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~--i~LiG~nGaGKSTLlk~Lag~l 81 (257)
..|++++ ++.|++.+ |+++||++++ |++ ++|+||||||||||+++|+|..
T Consensus 15 ~~l~~~~-~~~y~~~~-L~~vsl~i~~---Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 15 RTVPLAG-HVGFDSLP-DQLVNKSVSQ---GFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp --CCCCC-CC-CC--C-HHHHHHSCC----CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred ceEEEee-EEEECCee-cCCCceEecC---CCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 3577888 99999888 9999999999 999 9999999999999999999974
No 138
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.94 E-value=4.5e-09 Score=84.60 Aligned_cols=156 Identities=16% Similarity=0.129 Sum_probs=78.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhhhCCcee-cchhhhhhcCCCCCHHHHHHHhCchHH------HHHHHHHHHHh-ccc
Q 025114 56 SGRCIYLVGMMGSGKTTVGKILSGVLGYSFF-DCDTLIEQSVDGTSVAEIFKLYGEGFF------REKETEVLQKL-SLM 127 (257)
Q Consensus 56 ~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~-d~~~~~~~~~~~~~v~e~~~~~g~~~~------~~~~~~~l~~l-~~~ 127 (257)
.+.+|+|.|++||||||+++.|+..++..++ +.+... ..+.+++. .+...| +....+.+..+ ...
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~~g------~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~l~~~ 76 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEMG------QALRKLTP-GFSGDPQEHPMWIPLMLDALQYASREA 76 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEECCTHHHH------HHHHHTST-TCCSCGGGSTTHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhhhH------HHHHHhCc-cccchhhhhHHHHHHHHHHHHHHHHhC
Confidence 3789999999999999999999999998877 532211 11111111 111111 11122222221 111
Q ss_pred Ccccc-c--cChhHhHHHHHHHHhh-C---CcEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHH
Q 025114 128 RQLVV-S--TGGGAVTRPINWRYMQ-K---GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEE 200 (257)
Q Consensus 128 ~~~v~-~--lsgG~~qr~~~a~~l~-~---~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~ 200 (257)
...+. . +.. ...+......+. . ...++||.|.+.+.+|+..++ .++. . .+.+..++..
T Consensus 77 g~~vi~d~~~~~-~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~--~r~~----~--------~~~~~~~~~~ 141 (183)
T 2vli_A 77 AGPLIVPVSISD-TARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDG--QPQV----N--------VGTVEDRLNE 141 (183)
T ss_dssp SSCEEEEECCCC-HHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC------C----C--------HHHHHHHHHH
T ss_pred CCcEEEeeeccC-HHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhcc--ccch----h--------HHHHHHHHHh
Confidence 22221 1 111 112223333332 2 234899999999999998653 1221 1 0334344444
Q ss_pred HHHHHhcccceecchhhhhhccccCCCCCCHHHHHHHHHHHHHhhhc
Q 025114 201 RGEAYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGFLK 247 (257)
Q Consensus 201 r~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 247 (257)
+... . .+. .++++..++++++++|.+.+...+.
T Consensus 142 ~~~~-~-~~~------------~Id~~~~~~~~~~~~I~~~l~~~~~ 174 (183)
T 2vli_A 142 LRGE-Q-FQT------------HIDTAGLGTQQVAEQIAAQVGLTLA 174 (183)
T ss_dssp HTSG-G-GCS------------EEECTTCCHHHHHHHHHHHHTCCCC
T ss_pred hccc-c-cce------------EeeCCCCCHHHHHHHHHHHHHHhcC
Confidence 3222 1 111 3466778999999999999987664
No 139
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.93 E-value=2e-08 Score=81.73 Aligned_cols=171 Identities=13% Similarity=0.190 Sum_probs=90.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcC-C----CCCHHHHHHHhCchHHHHHHHHHH----HHhccc
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-D----GTSVAEIFKLYGEGFFREKETEVL----QKLSLM 127 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~-~----~~~v~e~~~~~g~~~~~~~~~~~l----~~l~~~ 127 (257)
+.+|+|+|++||||||+++.|+..+|..+++.|.+..... . +..+.+++.. |...+......++ ......
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~i~~~~~~ 90 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMER-GDLVPSGIVLELLKEAMVASLGD 90 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHc-CCcCCHHHHHHHHHHHHhccccc
Confidence 6799999999999999999999999999999888764432 1 2223344432 3222222222222 111101
Q ss_pred Ccc-ccc-cChhHhHHHHHHHHhhC-CcEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHH-
Q 025114 128 RQL-VVS-TGGGAVTRPINWRYMQK-GISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGE- 203 (257)
Q Consensus 128 ~~~-v~~-lsgG~~qr~~~a~~l~~-~~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~- 203 (257)
... +.. ..-...++..+...+.. ..+++||.|.+.+.+|+..++.. ..-..+ ....+ ..++...+..+.+
T Consensus 91 ~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~-~~~~~~--~~~~~---~~r~~~~~~~~~~~ 164 (199)
T 2bwj_A 91 TRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSRS-SLPVDD--TTKTI---AKRLEAYYRASIPV 164 (199)
T ss_dssp CSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCCC-CSCHHH--HHHHH---HHHHHHHHHHHHHH
T ss_pred CccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCCC-CCCCCC--CHHHH---HHHHHHHHHHHHHH
Confidence 111 111 11111222222333323 35789999999999999865421 000000 00011 1333333333332
Q ss_pred --HHhcccceecchhhhhhccccCCCCCCHHHHHHHHHHHHHhh
Q 025114 204 --AYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEGF 245 (257)
Q Consensus 204 --~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~ 245 (257)
.|..++.++. ++ .+.++++++.+|.+.+...
T Consensus 165 ~~~~~~~~~~~~----------id-~~~~~e~v~~~i~~~l~~~ 197 (199)
T 2bwj_A 165 IAYYETKTQLHK----------IN-AEGTPEDVFLQLCTAIDSI 197 (199)
T ss_dssp HHHHHHHSEEEE----------EE-TTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCEEE----------EE-CCCCHHHHHHHHHHHHHHh
Confidence 3443332111 23 3479999999998888654
No 140
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.91 E-value=1.4e-09 Score=87.90 Aligned_cols=31 Identities=26% Similarity=0.344 Sum_probs=28.2
Q ss_pred ceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 48 SQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 48 sl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
+|.+.+ |+.++|+||||+|||||++.|++.+
T Consensus 32 ~~~~~~---g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 32 NFNPEE---GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp SCCGGG---CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred hccccC---CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 466777 9999999999999999999999976
No 141
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.90 E-value=9.4e-09 Score=84.36 Aligned_cols=170 Identities=14% Similarity=0.168 Sum_probs=88.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcC--CCCCH----HHHHHHhCchHHHHHHHHHH----HH-hc
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV--DGTSV----AEIFKLYGEGFFREKETEVL----QK-LS 125 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~--~~~~v----~e~~~~~g~~~~~~~~~~~l----~~-l~ 125 (257)
..+|+|+|++||||||+.+.|+..+|..+++.|.+..... .+... .+++. .|+..+......++ .. +.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~l~~~i~~~l~ 93 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIK-EGQIVPQEITLALLRNAISDNVK 93 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHH-cCCcCCHHHHHHHHHHHHHhhhc
Confidence 5689999999999999999999999999999988765431 23332 23332 23322222222222 11 11
Q ss_pred cc-Cccccc-cChhHhHHHHHHHHhhCC-cEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHH
Q 025114 126 LM-RQLVVS-TGGGAVTRPINWRYMQKG-ISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERG 202 (257)
Q Consensus 126 ~~-~~~v~~-lsgG~~qr~~~a~~l~~~-~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~ 202 (257)
.. ...+.. ...+..+...+...+..+ .+++||.|.+.+.+|+..++.. .....+ ....+ ..++..++..+.
T Consensus 94 ~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~~-~~~~~~--~~e~~---~~r~~~~~~~~~ 167 (203)
T 1ukz_A 94 ANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKT-SGRSDD--NIESI---KKRFNTFKETSM 167 (203)
T ss_dssp TTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHH-HCCTTC--SHHHH---HHHHHHHHHTTH
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcccc-CCCCCC--CHHHH---HHHHHHHHHhhH
Confidence 11 122211 111122222222333344 5789999999999998754210 011111 00011 123333333333
Q ss_pred HH---HhcccceecchhhhhhccccCCCCCCHHHHHHHHHHHHHh
Q 025114 203 EA---YANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEG 244 (257)
Q Consensus 203 ~~---y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~ 244 (257)
+. |..++.++. ++.+ .+++++..+|.+.+..
T Consensus 168 ~~~~~~~~~~~vi~----------id~~-~~~e~v~~~i~~~l~~ 201 (203)
T 1ukz_A 168 PVIEYFETKSKVVR----------VRCD-RSVEDVYKDVQDAIRD 201 (203)
T ss_dssp HHHHHHHTTTCEEE----------EECS-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcEEE----------EECC-CCHHHHHHHHHHHHhc
Confidence 33 333443321 2333 7899999998887765
No 142
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.90 E-value=2.1e-08 Score=80.94 Aligned_cols=169 Identities=16% Similarity=0.193 Sum_probs=89.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcC-CCC----CHHHHHHHhCchHHHHHHHHHHHHhccc-Ccc
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-DGT----SVAEIFKLYGEGFFREKETEVLQKLSLM-RQL 130 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~-~~~----~v~e~~~~~g~~~~~~~~~~~l~~l~~~-~~~ 130 (257)
..+|+|+|++||||||+++.|+..+|..+++.|.+..... .+. .+.+++.. +...+......++...-.. ...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~i~~~~~~ 84 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKN-GEIVPSIVTVKLLKNAIDANQGK 84 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTSTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHhcCCC
Confidence 4689999999999999999999999999999987765432 122 23344432 2222222223333221110 111
Q ss_pred ccccCh---hHhHHHHHHHHhh---C-CcEEEEECCHHHHHHHHHhcCC-CCccccCCCCCCchhhHHHHHHHHHHHHHH
Q 025114 131 VVSTGG---GAVTRPINWRYMQ---K-GISVWLDVPLEALAQRIAAVGT-DSRPLLHQCESGDAYTEALNRLSTLWEERG 202 (257)
Q Consensus 131 v~~lsg---G~~qr~~~a~~l~---~-~~vl~LDep~~~L~~rl~~~g~-~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~ 202 (257)
..-+.| ...+...+...+. . ..+++||.|.+.+.+|+..++. ..++ + +....+ ..++...+..+.
T Consensus 85 ~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~---~-~~~~~~---~~ri~~~~~~~~ 157 (194)
T 1qf9_A 85 NFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRS---D-DNIESI---KKRFNTFNVQTK 157 (194)
T ss_dssp CEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCT---T-CSHHHH---HHHHHHHHHTHH
T ss_pred CEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCC---C-CCHHHH---HHHHHHHHHhHH
Confidence 111221 1112222222222 2 2478999999999999976532 1111 1 011111 244444444333
Q ss_pred H---HHhcccceecchhhhhhccccCCCCCCHHHHHHHHHHHHHh
Q 025114 203 E---AYANANARVSLENIAVKLGHKDVSSLTPVTIAIEALEQIEG 244 (257)
Q Consensus 203 ~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~ 244 (257)
+ .|..++.++ .++.+ .++++++.+|.+.+..
T Consensus 158 ~~~~~~~~~~~~~----------~id~~-~~~~~~~~~i~~~l~~ 191 (194)
T 1qf9_A 158 LVIDHYNKFDKVK----------IIPAN-RDVNEVYNDVENLFKS 191 (194)
T ss_dssp HHHHHHHHTTCEE----------EEECS-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCEE----------EEECC-CCHHHHHHHHHHHHHH
Confidence 3 233333221 12344 7999999988887764
No 143
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.87 E-value=7.6e-08 Score=80.98 Aligned_cols=113 Identities=19% Similarity=0.211 Sum_probs=66.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCC-----CCCHHHHHHHhCchHHHHHHHHHHHH-hccc---
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVD-----GTSVAEIFKLYGEGFFREKETEVLQK-LSLM--- 127 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~-----~~~v~e~~~~~g~~~~~~~~~~~l~~-l~~~--- 127 (257)
+.+|+|+|++||||||+++.|+..++..+++.++++..... +..+.+++.. |...+++...+++.. +...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~i~~~l~~~~~~ 94 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDA-GKLVSDEMVLELIEKNLETPPCK 94 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHTSGGGT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHC-CCcCCHHHHHHHHHHHHhccccc
Confidence 67899999999999999999999999999999887655221 2223344432 322233333333332 2111
Q ss_pred Cccccc-cChhHhHHHHHHHHh----hC-CcEEEEECCHHHHHHHHHhc
Q 025114 128 RQLVVS-TGGGAVTRPINWRYM----QK-GISVWLDVPLEALAQRIAAV 170 (257)
Q Consensus 128 ~~~v~~-lsgG~~qr~~~a~~l----~~-~~vl~LDep~~~L~~rl~~~ 170 (257)
...+.. ......|...+...+ .. ..+++||.|.+.+.+|+..+
T Consensus 95 ~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R 143 (233)
T 1ak2_A 95 NGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGR 143 (233)
T ss_dssp TCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTC
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence 111111 111222222222222 13 36889999999999999754
No 144
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.86 E-value=1.8e-08 Score=81.59 Aligned_cols=39 Identities=21% Similarity=0.408 Sum_probs=34.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhh
Q 025114 56 SGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQ 94 (257)
Q Consensus 56 ~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~ 94 (257)
.+.+|+|+|++||||||+.+.|+..+|..+++.|.+...
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~ 40 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRD 40 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHH
Confidence 477899999999999999999999999999998887654
No 145
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.84 E-value=1e-08 Score=83.09 Aligned_cols=38 Identities=26% Similarity=0.327 Sum_probs=34.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQ 94 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~ 94 (257)
+.++.|+|++||||||+++.|+..+|..+++.|.+.+.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~ 42 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEV 42 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHH
Confidence 78999999999999999999999999999999876543
No 146
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.83 E-value=5.5e-08 Score=79.73 Aligned_cols=114 Identities=17% Similarity=0.230 Sum_probs=68.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcC-CC----CCHHHHHHHhCchHHHHHHHHHHHH-hcc---c
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-DG----TSVAEIFKLYGEGFFREKETEVLQK-LSL---M 127 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~-~~----~~v~e~~~~~g~~~~~~~~~~~l~~-l~~---~ 127 (257)
+.+|+|+|++||||||+.+.|+..+|..+++.|+++.... .+ ..+.+++.. |+..++.....++.. +.. .
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~ 98 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDA-GDLVPSDLTNELVDDRLNNPDAA 98 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTSGGGT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHc-CCcccHHHHHHHHHHHHhcccCC
Confidence 6789999999999999999999999999999988765422 12 223333432 332333333333332 211 1
Q ss_pred Cccccc-cChhHhHHHHHHHHhh----CC-cEEEEECCHHHHHHHHHhcC
Q 025114 128 RQLVVS-TGGGAVTRPINWRYMQ----KG-ISVWLDVPLEALAQRIAAVG 171 (257)
Q Consensus 128 ~~~v~~-lsgG~~qr~~~a~~l~----~~-~vl~LDep~~~L~~rl~~~g 171 (257)
...+.. ...+..+...+...+. .+ .+++||.|.+.+.+|+..++
T Consensus 99 ~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~ 148 (201)
T 2cdn_A 99 NGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG 148 (201)
T ss_dssp TCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHC
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 111211 1112233333333332 24 58899999999999998654
No 147
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.82 E-value=9.9e-10 Score=92.41 Aligned_cols=40 Identities=33% Similarity=0.212 Sum_probs=22.9
Q ss_pred ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHH-hhhC
Q 025114 40 EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILS-GVLG 82 (257)
Q Consensus 40 ~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~La-g~lg 82 (257)
+.+..+++||++++ |++++|+||||||||||+++|+ +++.
T Consensus 13 ~~~~~~~~sl~v~~---G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 13 EAQTQGPGSMLKSV---GVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ---------CCEEC---CCEEEEECSCC----CHHHHHHC----
T ss_pred hhcccCCCCcccCC---CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 35678999999999 9999999999999999999999 9873
No 148
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.81 E-value=1.2e-09 Score=96.32 Aligned_cols=25 Identities=40% Similarity=0.551 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
|++++|+|||||||||++++|+|++
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 8999999999999999999999988
No 149
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=98.81 E-value=1.4e-08 Score=84.42 Aligned_cols=53 Identities=30% Similarity=0.498 Sum_probs=40.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcC-C-CCCHHHHHHHhCc
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV-D-GTSVAEIFKLYGE 110 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~-~-~~~v~e~~~~~g~ 110 (257)
+.+|+|+|++||||||+++.|+. +|..+++.|.+..... . +..+.+++...|+
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~ 58 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGA 58 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCG
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHH
Confidence 56899999999999999999999 8999999998876533 1 2234455555443
No 150
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.80 E-value=2.3e-08 Score=80.70 Aligned_cols=38 Identities=18% Similarity=0.441 Sum_probs=31.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhhhC-----Cceecchhhh
Q 025114 55 LSGRCIYLVGMMGSGKTTVGKILSGVLG-----YSFFDCDTLI 92 (257)
Q Consensus 55 ~~Ge~i~LiG~nGaGKSTLlk~Lag~lg-----~~~~d~~~~~ 92 (257)
|+|.+++|.|++||||||+++.|+..++ ..+++.++++
T Consensus 1 M~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~ 43 (192)
T 1kht_A 1 MKNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVM 43 (192)
T ss_dssp --CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHH
Confidence 3478999999999999999999999887 8888876543
No 151
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.77 E-value=1e-08 Score=92.27 Aligned_cols=40 Identities=23% Similarity=0.405 Sum_probs=32.9
Q ss_pred ccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCc
Q 025114 44 LKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYS 84 (257)
Q Consensus 44 l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~ 84 (257)
.+.|+++|.++. |+.++|+||||||||||+|+|+|++.+.
T Consensus 158 ~~~v~~~v~~~l-g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 158 WKFIPKEARPFF-AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp GGGSCTTTGGGT-CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hhhCCHHHHHhh-hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 456777776411 7899999999999999999999998654
No 152
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=98.77 E-value=3.2e-10 Score=101.63 Aligned_cols=75 Identities=25% Similarity=0.316 Sum_probs=64.8
Q ss_pred ccccccceEecCCCCCcE--EEEEcCCCChHHHHHHHHHhhhCCce--------------------ecchhhhhhcCCCC
Q 025114 42 QVLKNKSQEIEPYLSGRC--IYLVGMMGSGKTTVGKILSGVLGYSF--------------------FDCDTLIEQSVDGT 99 (257)
Q Consensus 42 ~~l~~isl~i~~~~~Ge~--i~LiG~nGaGKSTLlk~Lag~lg~~~--------------------~d~~~~~~~~~~~~ 99 (257)
.+++.+++.+++ |++ ++|+|++||||||++++|++.++..| +|.|..++... |+
T Consensus 10 ~il~~l~~~i~~---g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~~~~-g~ 85 (359)
T 2ga8_A 10 DVLQLLDNRIED---NYRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQ-PN 85 (359)
T ss_dssp HHHHHHHHTTTT---CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCCCCSSTTSEECC-HH
T ss_pred HHHHHHHHHhcc---CCeeEEEEECCCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhhhhhhhHHHHHh-Cc
Confidence 478899999998 888 99999999999999999999998877 88888887766 88
Q ss_pred CHHHHHHHhCchHHHHHHHHHH
Q 025114 100 SVAEIFKLYGEGFFREKETEVL 121 (257)
Q Consensus 100 ~v~e~~~~~g~~~~~~~~~~~l 121 (257)
++.++|...|+ .||..|...+
T Consensus 86 ~i~~if~~~ge-~fr~~E~~~~ 106 (359)
T 2ga8_A 86 KVAEMIENQGL-FKDHVEDVNF 106 (359)
T ss_dssp HHHHHHHTTTC-CGGGTTCTTC
T ss_pred cHHHHHHHhcc-cchHHHhhhc
Confidence 99999999998 8887765443
No 153
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.76 E-value=4.5e-09 Score=97.94 Aligned_cols=48 Identities=19% Similarity=0.108 Sum_probs=40.2
Q ss_pred ccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceecchhh
Q 025114 40 EAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCDTL 91 (257)
Q Consensus 40 ~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~~~ 91 (257)
+..+|+++||+|++ ++++|+||||||||||+++|+|++ |.+.+++.++
T Consensus 16 ~~~~l~~vsl~i~~----e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~ 67 (483)
T 3euj_A 16 NWNGFFARTFDFDE----LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTE 67 (483)
T ss_dssp EETTEEEEEEECCS----SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTS
T ss_pred ccccccceEEEEcc----ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEc
Confidence 45689999999994 899999999999999999999998 4455555443
No 154
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.76 E-value=4.6e-09 Score=95.02 Aligned_cols=121 Identities=12% Similarity=0.064 Sum_probs=68.0
Q ss_pred cccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC-----CceecchhhhhhcCCCCCHHHHHHHhCchHHHHHH
Q 025114 43 VLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG-----YSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKE 117 (257)
Q Consensus 43 ~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg-----~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~ 117 (257)
+|++++ +.+ |++++|+|||||||||++++|++++. .+...++.+ +... ...+ + ....
T Consensus 127 ~l~~l~--~~~---g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~-e~~~-~~~~-------~--~v~Q-- 188 (372)
T 2ewv_A 127 KVLELC--HRK---MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI-EYVF-KHKK-------S--IVNQ-- 188 (372)
T ss_dssp SHHHHT--TSS---SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSC-CSCC-CCSS-------S--EEEE--
T ss_pred HHHHHh--hcC---CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccH-hhhh-ccCc-------e--EEEe--
Confidence 456655 677 99999999999999999999999863 222222211 0000 0000 0 0000
Q ss_pred HHHHHHhcccCccccccChhHhHHHHHHHHhh-CCcEEEEECCHH--HHHHHH--HhcCCCCccccCCCCCCchhhHHHH
Q 025114 118 TEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQ-KGISVWLDVPLE--ALAQRI--AAVGTDSRPLLHQCESGDAYTEALN 192 (257)
Q Consensus 118 ~~~l~~l~~~~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~--~L~~rl--~~~g~~~~~~~h~~~~~~~~~~~~~ 192 (257)
..++. .+..+ +..++..+. +|+++++|||+. .+..-+ ...|..+..++|+.+ +...+ +
T Consensus 189 ----~~~g~---~~~~~------~~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~-~~~~~---~ 251 (372)
T 2ewv_A 189 ----REVGE---DTKSF------ADALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNT-AIDTI---H 251 (372)
T ss_dssp ----EEBTT---TBSCS------HHHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCS-HHHHH---H
T ss_pred ----eecCC---CHHHH------HHHHHHHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcch-HHHHH---H
Confidence 00111 11122 456676666 799999999963 222212 234677778889843 54444 7
Q ss_pred HHHHHH
Q 025114 193 RLSTLW 198 (257)
Q Consensus 193 ~v~~l~ 198 (257)
++..+.
T Consensus 252 rl~~l~ 257 (372)
T 2ewv_A 252 RIVDIF 257 (372)
T ss_dssp HHHHTS
T ss_pred HHHHhc
Confidence 775553
No 155
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.76 E-value=3.3e-08 Score=84.79 Aligned_cols=107 Identities=21% Similarity=0.193 Sum_probs=62.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhh---hCCcee--cchhhhhhcCCCCCHHHHHHHhCchHHHHHHHHHHHH-hcccCcc
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGV---LGYSFF--DCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQK-LSLMRQL 130 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~---lg~~~~--d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~-l~~~~~~ 130 (257)
+.+|.|+|++||||||+++.|+.. .|+.++ +.|.+.+... +. ...++..++......+.. +.. ...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~-~~------~~~~e~~~~~~~~~~i~~~l~~-~~v 75 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFP-VW------KEKYEEFIKKSTYRLIDSALKN-YWV 75 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSS-SC------CGGGHHHHHHHHHHHHHHHHTT-SEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHh-hh------hHHHHHHHHHHHHHHHHHHhhC-CEE
Confidence 678999999999999999999987 677777 8887654433 21 111223333333333332 221 212
Q ss_pred ccccCh-hHhHHHHHHHHh---hC-CcEEEEECCHHHHHHHHHhcC
Q 025114 131 VVSTGG-GAVTRPINWRYM---QK-GISVWLDVPLEALAQRIAAVG 171 (257)
Q Consensus 131 v~~lsg-G~~qr~~~a~~l---~~-~~vl~LDep~~~L~~rl~~~g 171 (257)
+...+. ....+..+.... .. ..+++||.|.+.+.+|+..++
T Consensus 76 IiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~ 121 (260)
T 3a4m_A 76 IVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERG 121 (260)
T ss_dssp EECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTT
T ss_pred EEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCC
Confidence 222111 112222222222 12 357899999999999998654
No 156
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.74 E-value=9.7e-10 Score=99.09 Aligned_cols=141 Identities=16% Similarity=0.101 Sum_probs=82.5
Q ss_pred Eecceeee---eCc--cccc---------cccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCC----ceecchhh
Q 025114 30 ESGNVHAP---IDE--AQVL---------KNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGY----SFFDCDTL 91 (257)
Q Consensus 30 ~~~~l~~~---~~~--~~~l---------~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~----~~~d~~~~ 91 (257)
+++++++. |.. ..+| +++||++++ |++++|+||||||||||+++|++++.+ +.+++..
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~---G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~- 212 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQL---ERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVP- 212 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHT---TCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSS-
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhc---CCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcc-
Confidence 67788887 753 3455 999999999 999999999999999999999998743 3333210
Q ss_pred hhhcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccC-cc-ccccChhHhHHHHHHHHhh-CCcEEEEECCHH-H---HH
Q 025114 92 IEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMR-QL-VVSTGGGAVTRPINWRYMQ-KGISVWLDVPLE-A---LA 164 (257)
Q Consensus 92 ~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~-~~-v~~lsgG~~qr~~~a~~l~-~~~vl~LDep~~-~---L~ 164 (257)
.. ... . .. ..+++.. +. ...++++...+..++..+. .|+.++++|+.. . ++
T Consensus 213 ---e~-~~~--~-----~~-----------~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l 270 (361)
T 2gza_A 213 ---EL-FLP--D-----HP-----------NHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFI 270 (361)
T ss_dssp ---CC-CCT--T-----CS-----------SEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHH
T ss_pred ---cc-Ccc--c-----cC-----------CEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHH
Confidence 00 000 0 00 0011100 00 0011233445666666666 699999999874 2 24
Q ss_pred HHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHH
Q 025114 165 QRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEE 200 (257)
Q Consensus 165 ~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~ 200 (257)
+++.....+....+|.. .+...+ +|+..+..+
T Consensus 271 ~~l~~g~~~~l~t~H~~-~~~~~~---~Rl~~l~~~ 302 (361)
T 2gza_A 271 NVAASGHGGSITSCHAG-SCELTF---ERLALMVLQ 302 (361)
T ss_dssp HHHHTTCCSCEEEEECS-SHHHHH---HHHHHHHTT
T ss_pred HHHhcCCCeEEEEECCC-CHHHHH---HHHHHHHhc
Confidence 44443233456677873 344443 777666543
No 157
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.74 E-value=9.9e-08 Score=77.73 Aligned_cols=74 Identities=19% Similarity=0.153 Sum_probs=46.7
Q ss_pred cEEEEECCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHHHHHHHHHHHh--cccceecchhhhhhccccCCCCC
Q 025114 152 ISVWLDVPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLSTLWEERGEAYA--NANARVSLENIAVKLGHKDVSSL 229 (257)
Q Consensus 152 ~vl~LDep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~l~~~r~~~y~--~~~~~~~~~~l~~~~~~~~~~~~ 229 (257)
.+++||.|.+.+.+|+..++ ++.....+ ..+ ..++...+..+...|. .+..++ +++.
T Consensus 127 ~vi~L~~~~e~~~~Rl~~R~---r~~~~~~~--~~~---~~~l~~~~~~~~~~~~~~~~~~~I------------d~~~- 185 (205)
T 2jaq_A 127 IVIYLRVSTKTAISRIKKRG---RSEELLIG--EEY---WETLNKNYEEFYKQNVYDFPFFVV------------DAEL- 185 (205)
T ss_dssp EEEEEECCHHHHHHHHHHHT---CHHHHHSC--HHH---HHHHHHHHHHHHHHHTTTSCEEEE------------ETTS-
T ss_pred EEEEEeCCHHHHHHHHHHcC---ChhhhcCc--HHH---HHHHHHHHHHHHHHccccCcEEEE------------ECCC-
Confidence 57899999999999997654 33221100 011 2556666666666664 234444 3443
Q ss_pred CHHHHHHHHHHHHHhhh
Q 025114 230 TPVTIAIEALEQIEGFL 246 (257)
Q Consensus 230 ~~~~~~~~i~~~i~~~~ 246 (257)
++++++.+|.+.+..+.
T Consensus 186 ~~~~v~~~I~~~l~~~~ 202 (205)
T 2jaq_A 186 DVKTQIELIMNKLNSIK 202 (205)
T ss_dssp CHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999988887653
No 158
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.74 E-value=3.6e-07 Score=75.50 Aligned_cols=111 Identities=14% Similarity=0.186 Sum_probs=62.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCC-----HHHHHHHhCchHHHHHHHHHH-HHhcc---cCc
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTS-----VAEIFKLYGEGFFREKETEVL-QKLSL---MRQ 129 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~-----v~e~~~~~g~~~~~~~~~~~l-~~l~~---~~~ 129 (257)
+|+|+|++||||||+.+.|+..+|..+++.+++......+.+ +.+.+.. +..........++ +.+.. ...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~l~~~~~~~~ 80 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQ-GNLVPDEVTIGIVHERLSKDDCQKG 80 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHH-TCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcccCCCc
Confidence 588999999999999999999999999999887765332222 2223322 1111111112222 22221 111
Q ss_pred cccc-cChhHhHHHHHHHHhh----CC-cEEEEECCHHHHHHHHHhc
Q 025114 130 LVVS-TGGGAVTRPINWRYMQ----KG-ISVWLDVPLEALAQRIAAV 170 (257)
Q Consensus 130 ~v~~-lsgG~~qr~~~a~~l~----~~-~vl~LDep~~~L~~rl~~~ 170 (257)
.+.. ......+...+...+. .+ .+++|+.|.+.+.+|+..+
T Consensus 81 ~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3fb4_A 81 FLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGR 127 (216)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSE
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence 1111 1111222223333332 24 5889999999999999864
No 159
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.74 E-value=6.2e-09 Score=84.46 Aligned_cols=41 Identities=32% Similarity=0.469 Sum_probs=34.1
Q ss_pred EecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC--Cceecchhhhh
Q 025114 50 EIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG--YSFFDCDTLIE 93 (257)
Q Consensus 50 ~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg--~~~~d~~~~~~ 93 (257)
.+++ |++++|+||||||||||+|+|++.++ .++++++++..
T Consensus 5 ~i~~---g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~ 47 (191)
T 1zp6_A 5 DDLG---GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWG 47 (191)
T ss_dssp -CCT---TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHH
T ss_pred CCCC---CeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhh
Confidence 3556 99999999999999999999999874 34788887654
No 160
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.73 E-value=5.7e-09 Score=93.61 Aligned_cols=37 Identities=27% Similarity=0.368 Sum_probs=33.2
Q ss_pred cccccc-ceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 42 QVLKNK-SQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 42 ~~l~~i-sl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
..|+.+ ++.|++ |+++.|+||||||||||++.|++..
T Consensus 118 ~~LD~lL~ggi~~---G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 118 KSLDKLLGGGIET---QAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHHTSSEES---SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCC---CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456666 689999 9999999999999999999999986
No 161
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.73 E-value=6.6e-09 Score=92.51 Aligned_cols=113 Identities=18% Similarity=0.264 Sum_probs=78.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhh--------------hhcCCCC-----CHHHH-HHHhCchHHHHH
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLI--------------EQSVDGT-----SVAEI-FKLYGEGFFREK 116 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~--------------~~~~~~~-----~v~e~-~~~~g~~~~~~~ 116 (257)
+.+++|+||+|||||||...|+..++..+++.|.+. +.. .+. ++.++ ...++...|++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~-~gvphhlidi~~~~~e~~s~~~F~~~ 118 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDR-GGVPHHLLGEVDPARGELTPADFRSL 118 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGG-TTCCEESSSCBCGGGCCCCHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHH-cCCCEeeccccCcccCccCHHHHHHH
Confidence 578999999999999999999999998888887652 111 122 33333 444566678888
Q ss_pred HHHHHHHhcccCccccccChhHhHHHHHHH-H--------------------hh-CCcEEEEECCHHHHHHHHHhc
Q 025114 117 ETEVLQKLSLMRQLVVSTGGGAVTRPINWR-Y--------------------MQ-KGISVWLDVPLEALAQRIAAV 170 (257)
Q Consensus 117 ~~~~l~~l~~~~~~v~~lsgG~~qr~~~a~-~--------------------l~-~~~vl~LDep~~~L~~rl~~~ 170 (257)
+.++++.+....+.++..||+......+.. . +. +..+++|+-|.+.|.+|+..+
T Consensus 119 a~~~i~~i~~~g~~pIlvGGtglYi~all~g~~~p~~~d~~~a~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R 194 (339)
T 3a8t_A 119 AGKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWVDVSVKVLTDYLAKR 194 (339)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHHHHHHBSSCCTTCC-------------CBSSEEEEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEcCHHHHHHHHHhCCCCCcccChhhhcccCccccccccCeEEEEEeCCHHHHHHHHHhh
Confidence 888887765555777778776443333221 1 11 245789999999999998753
No 162
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.73 E-value=6e-09 Score=82.26 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
|+.++|+||||+|||||+++|++.+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999977
No 163
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.73 E-value=3.2e-07 Score=75.91 Aligned_cols=37 Identities=22% Similarity=0.425 Sum_probs=33.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhc
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQS 95 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~ 95 (257)
+++|+|++||||||+.+.|+..+|..+++.+++....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~ 38 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAA 38 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence 5889999999999999999999999999998877653
No 164
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.72 E-value=2.3e-08 Score=88.20 Aligned_cols=92 Identities=20% Similarity=0.149 Sum_probs=59.3
Q ss_pred ccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC----Cc-eecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHHH
Q 025114 46 NKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG----YS-FFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEV 120 (257)
Q Consensus 46 ~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg----~~-~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~ 120 (257)
.+++...+ +++++|+|+|||||||+++.|++.+. .+ +++.|.. ... ..+....+
T Consensus 96 ~~~~~~~~---~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~--------r~~----------a~eqL~~~ 154 (306)
T 1vma_A 96 KLNVPPEP---PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF--------RAA----------AIEQLKIW 154 (306)
T ss_dssp CCCCCSSS---CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT--------CHH----------HHHHHHHH
T ss_pred CCcccCCC---CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc--------cHH----------HHHHHHHH
Confidence 45666677 99999999999999999999999872 22 2232211 010 01112233
Q ss_pred HHHhcccCccccccChhHhHHH---HHHHHhh-CCcEEEEECCH
Q 025114 121 LQKLSLMRQLVVSTGGGAVTRP---INWRYMQ-KGISVWLDVPL 160 (257)
Q Consensus 121 l~~l~~~~~~v~~lsgG~~qr~---~~a~~l~-~~~vl~LDep~ 160 (257)
++.+++. .+...++|+.+++ .+++++. +++++++|+|.
T Consensus 155 ~~~~gl~--~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 155 GERVGAT--VISHSEGADPAAVAFDAVAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHTCE--EECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECC
T ss_pred HHHcCCc--EEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 4444542 2345678888877 5555454 69999999995
No 165
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.71 E-value=3.2e-10 Score=112.04 Aligned_cols=89 Identities=15% Similarity=0.027 Sum_probs=67.2
Q ss_pred HHHHhccc----CccccccChhHhHHHHHHHHhh-CC--cEEEEECCHHHH-----------HHHHHhcCCCCccccCCC
Q 025114 120 VLQKLSLM----RQLVVSTGGGAVTRPINWRYMQ-KG--ISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQC 181 (257)
Q Consensus 120 ~l~~l~~~----~~~v~~lsgG~~qr~~~a~~l~-~~--~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~ 181 (257)
.+..+++. ++.+..|||||+||+.+|++|. +| .+++|||||++| +++|+..|.+++.++|++
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl 441 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL 441 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 57778875 3789999999999999998886 56 599999999998 577877799999999996
Q ss_pred CCCchhhHHHHHHHHH------HHHHHHHHhccccee
Q 025114 182 ESGDAYTEALNRLSTL------WEERGEAYANANARV 212 (257)
Q Consensus 182 ~~~~~~~~~~~~v~~l------~~~r~~~y~~~~~~~ 212 (257)
+.. ..| |++..| .+|++...|+++++.
T Consensus 442 ~~l-~~a---D~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 442 DVI-RRA---DWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp HHH-TTC---SEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred HHH-HhC---CEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 532 234 666555 455555555554443
No 166
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.70 E-value=5.2e-09 Score=96.07 Aligned_cols=47 Identities=19% Similarity=0.109 Sum_probs=38.4
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG 82 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg 82 (257)
.+|+++||++.|+++.+++++||+| +|+|+||||||||+++|+|..-
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsf~I---------~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 10 GYVGFANLPNQVYRKSVKRGFEFTL---------MVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp -----CCCCCCTTTTTCC-CCCEEE---------EEECCTTSSHHHHHHHHTTCCC
T ss_pred CcEEEEecceeECCEEEecCCCEEE---------EEECCCCCcHHHHHHHHhCCCC
Confidence 4689999999999999999999986 7999999999999999999763
No 167
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.70 E-value=2.1e-09 Score=94.08 Aligned_cols=103 Identities=16% Similarity=-0.034 Sum_probs=64.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCC-------cee-cchhhhhhcCCCCCHHHHHHHh----------C--chHHHHH
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGY-------SFF-DCDTLIEQSVDGTSVAEIFKLY----------G--EGFFREK 116 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~-------~~~-d~~~~~~~~~~~~~v~e~~~~~----------g--~~~~~~~ 116 (257)
+.+++|+|++|||||||++.|+++++. ..+ ..|.+.. ..+..+.+... | .......
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~----~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~ 106 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYL----THEDQLKLNEQFKNNKLLQGRGLPGTHDMKL 106 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBC----CHHHHHHHHHHTTTCGGGSSSCSTTSBCHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccC----ChHHHHHHhccccccchhhhccCcchhHHHH
Confidence 789999999999999999999998852 223 4444321 11222222211 0 1111123
Q ss_pred HHHHHHHhccc-----------CccccccChhHhHHHHHH--HHhhCCcEEEEECCHHHHH
Q 025114 117 ETEVLQKLSLM-----------RQLVVSTGGGAVTRPINW--RYMQKGISVWLDVPLEALA 164 (257)
Q Consensus 117 ~~~~l~~l~~~-----------~~~v~~lsgG~~qr~~~a--~~l~~~~vl~LDep~~~L~ 164 (257)
..+.++.+... +..-..+||||.+|..++ +.+ .++++++|+++..+.
T Consensus 107 l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld 166 (290)
T 1odf_A 107 LQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFN 166 (290)
T ss_dssp HHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCC
T ss_pred HHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc-CCCEEEEeCccccCC
Confidence 33455555432 134567899999987764 455 899999999988764
No 168
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.70 E-value=2.2e-08 Score=84.51 Aligned_cols=40 Identities=28% Similarity=0.157 Sum_probs=27.7
Q ss_pred cccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC
Q 025114 43 VLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG 82 (257)
Q Consensus 43 ~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg 82 (257)
-|.++|+.+.....|.+++|.|++||||||+++.|+..++
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4777888776222399999999999999999999999886
No 169
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=98.68 E-value=1.5e-07 Score=76.96 Aligned_cols=36 Identities=22% Similarity=0.426 Sum_probs=33.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQ 94 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~ 94 (257)
+++|.|++||||||+++.|++.+|.++++.|.+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~ 39 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRA 39 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHh
Confidence 899999999999999999999999999999987643
No 170
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.68 E-value=1e-06 Score=73.76 Aligned_cols=112 Identities=19% Similarity=0.169 Sum_probs=66.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCC-----HHHHHHHhCchH----HHHHHHHHHHHhccc
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTS-----VAEIFKLYGEGF----FREKETEVLQKLSLM 127 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~-----v~e~~~~~g~~~----~~~~~~~~l~~l~~~ 127 (257)
..+|.|+||+||||+|..+.|+..+|.+.+...+++.......| +.+++.. |... ......+.+....-.
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~-G~lVpde~~~~lv~~~l~~~~~~ 107 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMER-GELVPLEVVLALLKEAMIKLVDK 107 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHH-TCCCCHHHHHHHHHHHHHHHTTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhc-CCCCCHHHHHHHHHHHHhhcccc
Confidence 78999999999999999999999999999998887765442333 2222222 2211 111112222221111
Q ss_pred CccccccCh---hHhHHHHHHHHhhC-CcEEEEECCHHHHHHHHHhc
Q 025114 128 RQLVVSTGG---GAVTRPINWRYMQK-GISVWLDVPLEALAQRIAAV 170 (257)
Q Consensus 128 ~~~v~~lsg---G~~qr~~~a~~l~~-~~vl~LDep~~~L~~rl~~~ 170 (257)
.+ -.-|.| -..|...+...+.. ..+++||.|.+.+.+|+..+
T Consensus 108 ~~-g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R 153 (217)
T 3umf_A 108 NC-HFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKR 153 (217)
T ss_dssp CS-EEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC
T ss_pred cc-CcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcc
Confidence 11 111222 12333333344444 46889999999999999754
No 171
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.67 E-value=1.3e-07 Score=76.44 Aligned_cols=36 Identities=36% Similarity=0.545 Sum_probs=30.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhC-----Cceecchhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLG-----YSFFDCDTLI 92 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg-----~~~~d~~~~~ 92 (257)
|.+++|+|++||||||+++.|+..++ ..++++|.+.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~ 53 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWAR 53 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHH
Confidence 89999999999999999999999874 2467777653
No 172
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.67 E-value=1.3e-07 Score=80.79 Aligned_cols=118 Identities=20% Similarity=0.189 Sum_probs=71.4
Q ss_pred cccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC--Cceecchhhhh---------hcCCCCCHHHHHHHhCch
Q 025114 43 VLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG--YSFFDCDTLIE---------QSVDGTSVAEIFKLYGEG 111 (257)
Q Consensus 43 ~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg--~~~~d~~~~~~---------~~~~~~~v~e~~~~~g~~ 111 (257)
++.+.. .... +.++.|+|+|||||||+++.|+..++ ..++++|.+.. ... |.+..+++..
T Consensus 22 ~~~~~~-~~~~---~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~i~~~~-g~~~~~~~~~---- 92 (253)
T 2p5t_B 22 LTRGKK-SSKQ---PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEY-GKDSVEYTKD---- 92 (253)
T ss_dssp HHTTCC-CCSS---CEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHHHHTTC-SSTTHHHHHH----
T ss_pred HHccCC-cccC---CeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHHHHHHc-CchHHHHhhH----
Confidence 444444 4555 88999999999999999999999886 57889887632 222 4444444332
Q ss_pred HHHHHHHHHHHHhccc-CccccccCh-hHhHHHHHHHHhh-CC---cEEEEECCHHHHHHHHHh
Q 025114 112 FFREKETEVLQKLSLM-RQLVVSTGG-GAVTRPINWRYMQ-KG---ISVWLDVPLEALAQRIAA 169 (257)
Q Consensus 112 ~~~~~~~~~l~~l~~~-~~~v~~lsg-G~~qr~~~a~~l~-~~---~vl~LDep~~~L~~rl~~ 169 (257)
.+......+++.+... ...+....+ +..++..+.+.+. .+ .+++++.|.+.+.+|+..
T Consensus 93 ~~~~~~~~~~~~~~~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~ 156 (253)
T 2p5t_B 93 FAGKMVESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLI 156 (253)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHH
Confidence 1122223333333222 234444333 3445555555554 33 355789999998877764
No 173
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.67 E-value=7.1e-07 Score=73.85 Aligned_cols=112 Identities=14% Similarity=0.090 Sum_probs=63.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhc-----CCCCCHHHHHHHhCc---hHHHHHHHHHHHHhcccCcc
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQS-----VDGTSVAEIFKLYGE---GFFREKETEVLQKLSLMRQL 130 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~-----~~~~~v~e~~~~~g~---~~~~~~~~~~l~~l~~~~~~ 130 (257)
.++|+|++||||||+++.|+..+|..+++.++++... ..+..+.+++..... ..+.......+.........
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~~ 81 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGF 81 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCCE
Confidence 5899999999999999999999999999998876552 124455566544221 11112122222211100111
Q ss_pred ccc-cChhHhHHHHHHHHhhCC-cEEEEECCHHHHHHHHHhc
Q 025114 131 VVS-TGGGAVTRPINWRYMQKG-ISVWLDVPLEALAQRIAAV 170 (257)
Q Consensus 131 v~~-lsgG~~qr~~~a~~l~~~-~vl~LDep~~~L~~rl~~~ 170 (257)
+.. ......+...+...-..| .+++||.|.+.+.+|+..+
T Consensus 82 i~dg~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R 123 (214)
T 1e4v_A 82 LLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGR 123 (214)
T ss_dssp EEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTE
T ss_pred EEeCCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCC
Confidence 111 111111211221111133 5889999999999999754
No 174
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.66 E-value=2.3e-08 Score=80.61 Aligned_cols=38 Identities=32% Similarity=0.426 Sum_probs=33.6
Q ss_pred ccc--cccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCC
Q 025114 42 QVL--KNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGY 83 (257)
Q Consensus 42 ~~l--~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~ 83 (257)
..+ +++++++.+ | +++|+||||||||||+++|.++++.
T Consensus 13 ~~~~~~~~~~~~~~---g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 13 KSYGNKKVVIPFSK---G-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp GGGCSSCEEEECCS---S-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred EeecCccEEEecCC---C-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 356 788999998 8 9999999999999999999998853
No 175
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.66 E-value=2e-08 Score=82.93 Aligned_cols=36 Identities=25% Similarity=0.234 Sum_probs=31.6
Q ss_pred cccccccce-EecCCCCCcEEEEEcCCCChHHHHHHHHHh
Q 025114 41 AQVLKNKSQ-EIEPYLSGRCIYLVGMMGSGKTTVGKILSG 79 (257)
Q Consensus 41 ~~~l~~isl-~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag 79 (257)
...|+++.. .+++ |++++|+||||||||||++.|++
T Consensus 6 ~~~LD~~l~Ggi~~---G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 6 TKSLDSLLGGGFAP---GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CHHHHHHTTSSBCT---TSEEEEECSTTSSHHHHHHHHHH
T ss_pred cHHHHHhhcCCCcC---CEEEEEECCCCCCHHHHHHHHHH
Confidence 346777765 7888 99999999999999999999998
No 176
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=98.65 E-value=3.8e-09 Score=87.76 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=34.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhh
Q 025114 56 SGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIE 93 (257)
Q Consensus 56 ~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~ 93 (257)
++.+++|+|++||||||+++.|+..+|..+++.|.+..
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~ 39 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYR 39 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHH
Confidence 36689999999999999999999999999999998764
No 177
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.65 E-value=5.8e-08 Score=79.98 Aligned_cols=26 Identities=23% Similarity=0.151 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhC
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLG 82 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg 82 (257)
|.+++|+||+|||||||++.|+..++
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 89999999999999999999998774
No 178
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.64 E-value=3.5e-07 Score=73.85 Aligned_cols=32 Identities=41% Similarity=0.401 Sum_probs=28.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh---CCceecchh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVL---GYSFFDCDT 90 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~l---g~~~~d~~~ 90 (257)
+++|.|++||||||+.+.|+..+ |..+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 68999999999999999999988 888887653
No 179
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.64 E-value=3.9e-09 Score=96.91 Aligned_cols=49 Identities=20% Similarity=0.181 Sum_probs=43.4
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
.++++++++.|+...+|+++ +. .+ |++++|+||||||||||+++|++.+
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~~-~~---ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-IK-RP---HGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-HT-SS---SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCHHHcCCCHHHHHHHHHH-HH-hc---CCeEEEECCCCCCHHHHHHHHHhhc
Confidence 56788888888888889998 54 66 9999999999999999999999988
No 180
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.63 E-value=4.4e-08 Score=79.93 Aligned_cols=37 Identities=38% Similarity=0.588 Sum_probs=33.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQ 94 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~ 94 (257)
..+|+|+|++||||||+++.|+.. |.++++.|.+...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~ 44 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAAR 44 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHH
Confidence 568999999999999999999998 9999999987643
No 181
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.63 E-value=1.9e-08 Score=85.92 Aligned_cols=46 Identities=22% Similarity=0.288 Sum_probs=36.0
Q ss_pred cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhh
Q 025114 41 AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLI 92 (257)
Q Consensus 41 ~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~ 92 (257)
..++++.+ .+ |++++|+|||||||||++|+|+..+|..++|.+.+.
T Consensus 17 ~~~~~~m~---~~---g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 17 RLERPHMT---AI---APVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp ------CT---TT---SCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred hhhhhhcC---CC---CcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 34455544 55 999999999999999999999999999999988776
No 182
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.61 E-value=4.7e-10 Score=111.75 Aligned_cols=75 Identities=17% Similarity=0.154 Sum_probs=58.1
Q ss_pred HHHHHhccc----CccccccChhHhHHHHHHHHhh-CCc--EEEEECCHHHH-----------HHHHHhcCCCCccccCC
Q 025114 119 EVLQKLSLM----RQLVVSTGGGAVTRPINWRYMQ-KGI--SVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQ 180 (257)
Q Consensus 119 ~~l~~l~~~----~~~v~~lsgG~~qr~~~a~~l~-~~~--vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~ 180 (257)
+.|..+++. ++.+..|||||+||+.+|++|. +|. +++||||+++| +++++..|.++++++||
T Consensus 446 ~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd 525 (916)
T 3pih_A 446 EFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHD 525 (916)
T ss_dssp HHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCC
T ss_pred HHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 456777774 3789999999999999998886 455 99999999988 56666668999999999
Q ss_pred CCCCchhhHHHHHHHHH
Q 025114 181 CESGDAYTEALNRLSTL 197 (257)
Q Consensus 181 ~~~~~~~~~~~~~v~~l 197 (257)
++.+. .| |++..|
T Consensus 526 ~~~~~-~a---D~ii~l 538 (916)
T 3pih_A 526 EEVIR-NA---DHIIDI 538 (916)
T ss_dssp HHHHH-TC---SEEEEE
T ss_pred HHHHH-hC---CEEEEE
Confidence 65432 24 555555
No 183
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.60 E-value=3.8e-09 Score=93.96 Aligned_cols=54 Identities=28% Similarity=0.359 Sum_probs=48.6
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCC-------cEEEEEcCCCChHHHHHHHHHhhhCC
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSG-------RCIYLVGMMGSGKTTVGKILSGVLGY 83 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~G-------e~i~LiG~nGaGKSTLlk~Lag~lg~ 83 (257)
.+++.++++..||...+++++++.+.. | +.++|+||||+|||||+++|++.++.
T Consensus 17 ~~lr~~~l~~~~g~~~~~~~l~~~i~~---~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~ 77 (334)
T 1in4_A 17 QFLRPKSLDEFIGQENVKKKLSLALEA---AKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT 77 (334)
T ss_dssp CTTSCSSGGGCCSCHHHHHHHHHHHHH---HHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred HHcCCccHHHccCcHHHHHHHHHHHHH---HHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 357788999999998999999999986 6 78999999999999999999999854
No 184
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.59 E-value=2.1e-08 Score=93.52 Aligned_cols=41 Identities=24% Similarity=0.182 Sum_probs=36.2
Q ss_pred ccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh----CCceec
Q 025114 44 LKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL----GYSFFD 87 (257)
Q Consensus 44 l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d 87 (257)
-+++||++.+ |++++|+|+||||||||+++|+|++ |.+++.
T Consensus 283 ~~~Isl~i~~---GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 283 DEPLNVEGKA---PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp BCCCCCCSCT---TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCceeeccC---CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 4689999999 9999999999999999999999987 455553
No 185
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.58 E-value=4.8e-08 Score=85.59 Aligned_cols=46 Identities=22% Similarity=0.244 Sum_probs=40.2
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
+.++++++.|+... ++++|+ + |++++|+|+||+||||+++.|++.+
T Consensus 77 ~~~~~l~~~~~~~~--~~i~~~--~---~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 77 TVYEALKEALGGEA--RLPVLK--D---RNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp HHHHHHHHHTTSSC--CCCCCC--S---SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCC--ceeecC--C---CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678888887653 788998 6 9999999999999999999999987
No 186
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.56 E-value=4.6e-08 Score=83.71 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=31.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhhhCCceecchhhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLI 92 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~ 92 (257)
.+++|+||||||||||.+.|++.++..+++.|.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~ 36 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQ 36 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHh
Confidence 46899999999999999999999999999888753
No 187
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.56 E-value=3.2e-06 Score=71.60 Aligned_cols=114 Identities=18% Similarity=0.176 Sum_probs=65.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCC-HH----HHHHHhCchHHHHHHHHHH-HHhcccC-c
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTS-VA----EIFKLYGEGFFREKETEVL-QKLSLMR-Q 129 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~-v~----e~~~~~g~~~~~~~~~~~l-~~l~~~~-~ 129 (257)
+.+++|+||+||||||+.+.|+..+|...++.+++........+ .. +.+.. |.....+....++ ..+.... .
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~~~~~l~~~~~~ 107 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINE-GKLVDDQMVLSLVDEKLKTPQCK 107 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHT-TCCCCHHHHHHHHHHHTTSGGGS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhc-CCCCcHHHHHHHHHHHHhccccc
Confidence 77899999999999999999999999999999888766442222 22 22221 1111111111222 2222111 1
Q ss_pred cccccC---hhHhHHHHHHHHhh----CC-cEEEEECCHHHHHHHHHhcC
Q 025114 130 LVVSTG---GGAVTRPINWRYMQ----KG-ISVWLDVPLEALAQRIAAVG 171 (257)
Q Consensus 130 ~v~~ls---gG~~qr~~~a~~l~----~~-~vl~LDep~~~L~~rl~~~g 171 (257)
...-+. -+..|...+...+. .+ .+++||.|.+.+.+|+..++
T Consensus 108 ~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~ 157 (243)
T 3tlx_A 108 KGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRL 157 (243)
T ss_dssp SEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred CCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCC
Confidence 111121 12333333333332 34 57899999999999998653
No 188
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.56 E-value=6.7e-09 Score=88.39 Aligned_cols=53 Identities=23% Similarity=0.346 Sum_probs=46.7
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCce
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSF 85 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~ 85 (257)
..+++++.+.|+...++++++++++. | +.|+||||||||||+++|++.++..+
T Consensus 25 ~~~l~~l~~~~~~~~~~~~~~~~~~~---g--~ll~G~~G~GKTtl~~~i~~~~~~~~ 77 (254)
T 1ixz_A 25 KEELKEIVEFLKNPSRFHEMGARIPK---G--VLLVGPPGVGKTHLARAVAGEARVPF 77 (254)
T ss_dssp HHHHHHHHHHHHCHHHHHHTTCCCCS---E--EEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHCHHHHHHcCCCCCC---e--EEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 45678888888888899999999998 8 99999999999999999999886443
No 189
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.54 E-value=8.3e-09 Score=89.17 Aligned_cols=53 Identities=23% Similarity=0.346 Sum_probs=45.7
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCce
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSF 85 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~ 85 (257)
..+++++.+.|+...++++++++++. | ++|+||||||||||+++|++.++..+
T Consensus 49 ~~~l~~l~~~~~~~~~l~~~~~~~~~---g--vll~Gp~GtGKTtl~~~i~~~~~~~~ 101 (278)
T 1iy2_A 49 KEELKEIVEFLKNPSRFHEMGARIPK---G--VLLVGPPGVGKTHLARAVAGEARVPF 101 (278)
T ss_dssp HHHHHHHHHHHHCHHHHHHTTCCCCC---E--EEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHCHHHHHHcCCCCCC---e--EEEECCCcChHHHHHHHHHHHcCCCE
Confidence 34567788888888899999999998 8 89999999999999999999886443
No 190
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.54 E-value=2.2e-09 Score=106.82 Aligned_cols=89 Identities=17% Similarity=0.150 Sum_probs=68.2
Q ss_pred HHHHhccc----CccccccChhHhHHHHHHHHhh-C--CcEEEEECCHHHH-----------HHHHHhcCCCCccccCCC
Q 025114 120 VLQKLSLM----RQLVVSTGGGAVTRPINWRYMQ-K--GISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQC 181 (257)
Q Consensus 120 ~l~~l~~~----~~~v~~lsgG~~qr~~~a~~l~-~--~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~ 181 (257)
.|..+|+. ++.+..|||||+||+.+|.+|. + |.+++||||+++| +++|+..|.++++++||+
T Consensus 487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl 566 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 566 (972)
T ss_dssp HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 46777775 3789999999999999998886 4 5899999999998 577877799999999996
Q ss_pred CCCchhhHHHHHHHHH------HHHHHHHHhccccee
Q 025114 182 ESGDAYTEALNRLSTL------WEERGEAYANANARV 212 (257)
Q Consensus 182 ~~~~~~~~~~~~v~~l------~~~r~~~y~~~~~~~ 212 (257)
+.+ ..| |++..| ..|++...|+++++.
T Consensus 567 ~~i-~~A---DrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 567 DTM-LAA---DYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp HHH-HSC---SEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred HHH-HhC---CEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 543 234 666666 456665556555443
No 191
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.53 E-value=2.1e-07 Score=77.80 Aligned_cols=112 Identities=16% Similarity=0.223 Sum_probs=64.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCC-----HHHHHHHhCchHHHHHHHHHHH-Hhcc--cCcc
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTS-----VAEIFKLYGEGFFREKETEVLQ-KLSL--MRQL 130 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~-----v~e~~~~~g~~~~~~~~~~~l~-~l~~--~~~~ 130 (257)
+++|+|++||||||+.+.|+..+|..+++.++++.....+.+ +.+++. .|...+.+...+++. .+.. ....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~i~~~l~~~~g~~v 80 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFID-RGDLVPDDITIPMVLETLESKGKDGW 80 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHCTTCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHH-cCCcCcHHHHHHHHHHHHhcccCCeE
Confidence 689999999999999999999999999999888766532222 222222 222122222222222 1211 1111
Q ss_pred ccc-cChhHhHHHHHHHHh----hCC-cEEEEECCHHHHHHHHHhcC
Q 025114 131 VVS-TGGGAVTRPINWRYM----QKG-ISVWLDVPLEALAQRIAAVG 171 (257)
Q Consensus 131 v~~-lsgG~~qr~~~a~~l----~~~-~vl~LDep~~~L~~rl~~~g 171 (257)
+.. ...+..+...+...+ ..| .+++||.|.+.+.+|+..++
T Consensus 81 IlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 127 (223)
T 2xb4_A 81 LLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRR 127 (223)
T ss_dssp EEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBC
T ss_pred EEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHccc
Confidence 211 111222333333322 134 58899999999999998654
No 192
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.53 E-value=1e-07 Score=76.07 Aligned_cols=113 Identities=18% Similarity=0.177 Sum_probs=62.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHh-hhCCceecchhhhhhcCCCCCHH--HHHHHhCchHHHHHHHHHHHHhc---ccCcc-
Q 025114 58 RCIYLVGMMGSGKTTVGKILSG-VLGYSFFDCDTLIEQSVDGTSVA--EIFKLYGEGFFREKETEVLQKLS---LMRQL- 130 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag-~lg~~~~d~~~~~~~~~~~~~v~--e~~~~~g~~~~~~~~~~~l~~l~---~~~~~- 130 (257)
.++.|+|++||||||+.+.|+. .++..+++.|.+..... +.+.. ..+...++..++....+++...- .....
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~v 81 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIM-AHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGV 81 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHT-TSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSCCEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHHhh-CCCccchhhhchhhhhHHHHHHHHHHHHHHhhccCCCeE
Confidence 4789999999999999999998 68888998887654433 21110 00000111122222223333221 11111
Q ss_pred ccc-cChhHhHHHHHHHHhh--C-C-cEEEEECCHHHHHHHHHhcC
Q 025114 131 VVS-TGGGAVTRPINWRYMQ--K-G-ISVWLDVPLEALAQRIAAVG 171 (257)
Q Consensus 131 v~~-lsgG~~qr~~~a~~l~--~-~-~vl~LDep~~~L~~rl~~~g 171 (257)
+.. ..-...++..+...+. . + .+++||.|.+.+.+|+..++
T Consensus 82 i~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~ 127 (181)
T 1ly1_A 82 IISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG 127 (181)
T ss_dssp EECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCG
T ss_pred EEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccc
Confidence 111 1112223333333332 1 2 58899999999999997643
No 193
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.52 E-value=4.2e-07 Score=73.00 Aligned_cols=36 Identities=39% Similarity=0.691 Sum_probs=30.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhhh---CCcee--cchhh
Q 025114 56 SGRCIYLVGMMGSGKTTVGKILSGVL---GYSFF--DCDTL 91 (257)
Q Consensus 56 ~Ge~i~LiG~nGaGKSTLlk~Lag~l---g~~~~--d~~~~ 91 (257)
+|++++|+|++||||||+++.|++.+ |.+++ |++.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 38999999999999999999999988 86665 55544
No 194
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.51 E-value=1.9e-08 Score=79.37 Aligned_cols=59 Identities=15% Similarity=0.001 Sum_probs=45.1
Q ss_pred ccccccChhHhHHHHHH------HHhh-CCcEEEEECCHHHH-----------HHHHHhcCCCCccccCCCCCCchhh
Q 025114 129 QLVVSTGGGAVTRPINW------RYMQ-KGISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQCESGDAYT 188 (257)
Q Consensus 129 ~~v~~lsgG~~qr~~~a------~~l~-~~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~~~~~~~~ 188 (257)
+++..|||||+|++.++ +++. +|++++||||+++| +.++...|.+++.++|+. ....+|
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~ 129 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDAA 129 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGGC
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-HHHHhC
Confidence 67889999999999876 5555 69999999999998 233333467889999996 333444
No 195
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.51 E-value=1.3e-07 Score=80.61 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=31.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCc----------eecchhhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYS----------FFDCDTLIE 93 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~----------~~d~~~~~~ 93 (257)
..+|+|.|++||||||+.+.|+..+|.. +++.|++..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 3579999999999999999999999876 678887654
No 196
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=98.51 E-value=2.8e-07 Score=75.26 Aligned_cols=32 Identities=25% Similarity=0.195 Sum_probs=27.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhh-CCceecc
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVL-GYSFFDC 88 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~l-g~~~~d~ 88 (257)
|.+|+|+|++||||||+++.|+..+ |..+++.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~ 36 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYL 36 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEE
Confidence 8899999999999999999999988 5655554
No 197
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.51 E-value=2.8e-08 Score=86.14 Aligned_cols=45 Identities=29% Similarity=0.476 Sum_probs=39.4
Q ss_pred eeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCce
Q 025114 36 APIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSF 85 (257)
Q Consensus 36 ~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~ 85 (257)
..|+...++++++++++. | ++|+||||||||||+|+|++.++..+
T Consensus 28 ~~~~~~~~l~~~~l~~~~---G--vlL~Gp~GtGKTtLakala~~~~~~~ 72 (274)
T 2x8a_A 28 APVRNPDQFKALGLVTPA---G--VLLAGPPGCGKTLLAKAVANESGLNF 72 (274)
T ss_dssp HHHHSHHHHHHTTCCCCS---E--EEEESSTTSCHHHHHHHHHHHTTCEE
T ss_pred HHhhCHHHHHHcCCCCCC---e--EEEECCCCCcHHHHHHHHHHHcCCCE
Confidence 345667789999999998 8 99999999999999999999987543
No 198
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.50 E-value=1.3e-06 Score=70.19 Aligned_cols=35 Identities=20% Similarity=0.345 Sum_probs=29.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhhhC-----Cceecchhhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGVLG-----YSFFDCDTLI 92 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~lg-----~~~~d~~~~~ 92 (257)
.+|+|+|++||||||+++.|+..++ ..+++.++.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~ 41 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFM 41 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHH
Confidence 3689999999999999999999886 5677755554
No 199
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=98.48 E-value=1.7e-06 Score=72.01 Aligned_cols=54 Identities=33% Similarity=0.531 Sum_probs=44.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcC--CCCCHHHHHHHhCchH
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSV--DGTSVAEIFKLYGEGF 112 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~--~~~~v~e~~~~~g~~~ 112 (257)
--++|+|..||||||+.++|+. +|.+++|.|.+....+ .+..+.+++..+|+..
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~ 65 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAF 65 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhh
Confidence 3589999999999999999998 8999999999876543 2456778888777543
No 200
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.48 E-value=5.7e-08 Score=87.32 Aligned_cols=36 Identities=28% Similarity=0.414 Sum_probs=31.0
Q ss_pred cccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC
Q 025114 43 VLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG 82 (257)
Q Consensus 43 ~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg 82 (257)
-++++++.+ + |++++|+||||||||||+++|+|.+.
T Consensus 205 gl~~L~~~~-~---G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 205 GLKPLEEAL-T---GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp THHHHHHHH-T---TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CHHHHHHhc-C---CCEEEEECCCCccHHHHHHHHhcccc
Confidence 467777755 4 99999999999999999999999775
No 201
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.48 E-value=7.9e-07 Score=83.76 Aligned_cols=142 Identities=20% Similarity=0.237 Sum_probs=81.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCcee-----cchhhhhhcCCCCCHHHHHHHhCchHHHHHHHH---HHH----Hh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFF-----DCDTLIEQSVDGTSVAEIFKLYGEGFFREKETE---VLQ----KL 124 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~-----d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~---~l~----~l 124 (257)
..+|.++|++||||||+.+.|+..+++.++ +.|.+...........++|...++..++.++.. +++ .+
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~~~L 114 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVKSYL 114 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999988865544 446665554422223444443444444433221 222 12
Q ss_pred c-ccCcccc--ccChhHhHHHHHHHHhh--CCcEEEEE--CC-HHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHHH
Q 025114 125 S-LMRQLVV--STGGGAVTRPINWRYMQ--KGISVWLD--VP-LEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLST 196 (257)
Q Consensus 125 ~-~~~~~v~--~lsgG~~qr~~~a~~l~--~~~vl~LD--ep-~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~~ 196 (257)
. .....++ ++.++..+|..+...+. ...+++++ .| .+.+.+|+.... ..+|..++.+. +.+..
T Consensus 115 ~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~-~~rPdl~~~d~--------e~~~~ 185 (520)
T 2axn_A 115 AKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVK-ISSPDYKDCNS--------AEAMD 185 (520)
T ss_dssp HHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHT-TTSGGGTTSCH--------HHHHH
T ss_pred HhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhh-hcCCccccCCH--------HHHHH
Confidence 1 1223344 67777777777766554 33455555 34 455667775432 34666665321 34455
Q ss_pred HHHHHHHHHhc
Q 025114 197 LWEERGEAYAN 207 (257)
Q Consensus 197 l~~~r~~~y~~ 207 (257)
.+..|...|..
T Consensus 186 ~~~~Ri~~y~~ 196 (520)
T 2axn_A 186 DFMKRISCYEA 196 (520)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHhhhh
Confidence 66677777664
No 202
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.48 E-value=6.3e-08 Score=81.23 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=25.7
Q ss_pred eEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC
Q 025114 49 QEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG 82 (257)
Q Consensus 49 l~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg 82 (257)
-..++ |++++|+||||||||||+++|+|.+.
T Consensus 11 ~~~~~---G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 11 HHMAQ---GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ----C---CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred ccCCC---CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34566 99999999999999999999999875
No 203
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.48 E-value=3.1e-09 Score=106.03 Aligned_cols=63 Identities=21% Similarity=0.238 Sum_probs=53.6
Q ss_pred HHHHhccc----CccccccChhHhHHHHHHHHhh-C--CcEEEEECCHHHH-----------HHHHHhcCCCCccccCCC
Q 025114 120 VLQKLSLM----RQLVVSTGGGAVTRPINWRYMQ-K--GISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQC 181 (257)
Q Consensus 120 ~l~~l~~~----~~~v~~lsgG~~qr~~~a~~l~-~--~~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~ 181 (257)
.|..+++. ++.+..|||||+||+.+|.+|. + |.+++||||+++| +++|+..|.+++.++||+
T Consensus 504 ~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl 583 (993)
T 2ygr_A 504 FLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDE 583 (993)
T ss_dssp HHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCH
Confidence 46777774 3789999999999999998876 4 5899999999998 577777899999999995
Q ss_pred C
Q 025114 182 E 182 (257)
Q Consensus 182 ~ 182 (257)
+
T Consensus 584 ~ 584 (993)
T 2ygr_A 584 D 584 (993)
T ss_dssp H
T ss_pred H
Confidence 4
No 204
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.47 E-value=5.8e-08 Score=80.29 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=25.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhC
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLG 82 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg 82 (257)
|++++|+||||||||||+++|+|++.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999974
No 205
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.47 E-value=8.5e-08 Score=86.30 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=37.3
Q ss_pred EecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHh
Q 025114 30 ESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSG 79 (257)
Q Consensus 30 ~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag 79 (257)
.+++|+.. +...+++++|++.+ | +++|+||||||||||+++|.+
T Consensus 5 ~i~~L~l~--~~~~~~~~~~~~~~---g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 5 RLSALSTL--NYRNLAPGTLNFPE---G-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp CEEEEEEE--SBTTCCSEEEECCS---E-EEEEECCTTSSHHHHHHHHHH
T ss_pred EEeEEEEe--CccceeeeEEEEcC---C-eEEEECCCCCChhHHHHHHHH
Confidence 45555553 45578999999998 8 999999999999999999997
No 206
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.46 E-value=6.6e-08 Score=79.57 Aligned_cols=26 Identities=35% Similarity=0.317 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhC
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLG 82 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg 82 (257)
|++++|+||||||||||+++|+|++.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 89999999999999999999999763
No 207
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.45 E-value=7e-08 Score=78.39 Aligned_cols=26 Identities=35% Similarity=0.361 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhC
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLG 82 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg 82 (257)
|++++|+||||||||||+++|++++.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999874
No 208
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.45 E-value=1.1e-07 Score=79.07 Aligned_cols=37 Identities=24% Similarity=0.430 Sum_probs=34.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIE 93 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~ 93 (257)
+.+++|+||+||||||++++|++.+|.++++.+.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999999999999888765
No 209
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.45 E-value=9.3e-08 Score=78.21 Aligned_cols=30 Identities=37% Similarity=0.307 Sum_probs=25.8
Q ss_pred eEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 49 QEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 49 l~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
+++.+ |++++|+|||||||||++++|++.+
T Consensus 1 m~i~~---g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 1 MDNEK---GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp ---CC---CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCC---CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 35667 9999999999999999999999987
No 210
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.44 E-value=1.2e-08 Score=86.30 Aligned_cols=44 Identities=20% Similarity=0.143 Sum_probs=36.5
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG 82 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg 82 (257)
.|+++|++..|+. ++++.+ ++++|+||||||||||+++|+|++.
T Consensus 9 ~l~l~~~~~~~~~-------~~~~~~----~~~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------TFDLDE----LVTTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp EEEEEEETTEEEE-------EECHHH----HHHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEEEeeecccCC-------EEEEcC----cEEEEECCCCCCHHHHHHHHhcccc
Confidence 5888999887753 455553 6899999999999999999999984
No 211
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.42 E-value=2e-05 Score=64.17 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhhhCC
Q 025114 56 SGRCIYLVGMMGSGKTTVGKILSGVLGY 83 (257)
Q Consensus 56 ~Ge~i~LiG~nGaGKSTLlk~Lag~lg~ 83 (257)
+|.+|+|.|++||||||+++.|+..++.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4789999999999999999999998865
No 212
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.42 E-value=1.1e-06 Score=71.21 Aligned_cols=30 Identities=33% Similarity=0.382 Sum_probs=25.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh---CCceecc
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVL---GYSFFDC 88 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~l---g~~~~d~ 88 (257)
+|+|.|++||||||+.+.|+..+ |..++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 68999999999999999999988 8776644
No 213
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.41 E-value=1.7e-08 Score=89.53 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=41.2
Q ss_pred ceeeeeCccccccccceEecCCCCCc------EEEEEcCCCChHHHHHHHHHhhhC
Q 025114 33 NVHAPIDEAQVLKNKSQEIEPYLSGR------CIYLVGMMGSGKTTVGKILSGVLG 82 (257)
Q Consensus 33 ~l~~~~~~~~~l~~isl~i~~~~~Ge------~i~LiG~nGaGKSTLlk~Lag~lg 82 (257)
.+++.|+++.+|++++..+.. +. +++|+||||||||||+++|+++++
T Consensus 65 ll~~~~~~~~~l~~~~~~~l~---~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 65 LLSFYVTARQTLQQATYQFLG---KPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---CCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHhhcchHHHHHHHHHHhc---cCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 356677888899999999887 54 899999999999999999999985
No 214
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.41 E-value=1.9e-07 Score=77.20 Aligned_cols=41 Identities=29% Similarity=0.328 Sum_probs=35.1
Q ss_pred eEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC------Cceecchhhh
Q 025114 49 QEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG------YSFFDCDTLI 92 (257)
Q Consensus 49 l~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg------~~~~d~~~~~ 92 (257)
+.+.+ |.+++|+|++||||||+++.|++.++ ..++++|.+.
T Consensus 20 ~~~~~---~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 20 LRNQR---GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp HHTSS---CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred ccCCC---CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 45667 99999999999999999999999886 6788877654
No 215
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.40 E-value=9.5e-06 Score=67.25 Aligned_cols=109 Identities=17% Similarity=0.233 Sum_probs=62.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCC-----HHHHHHHhCchHHHHHHHHHHH-HhcccCcccc
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTS-----VAEIFKLYGEGFFREKETEVLQ-KLSLMRQLVV 132 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~-----v~e~~~~~g~~~~~~~~~~~l~-~l~~~~~~v~ 132 (257)
++.|+||+||||+|..+.|+..+|.+.+...+++.......| +.+++.. |.....+...+++. ++..... .
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~-G~lvpd~iv~~lv~~~l~~~~~--~ 78 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMER-GELVPDDLIIALIEEVFPKHGN--V 78 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHH-TCCCCHHHHHHHHHHHCCSSSC--E
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhc-CCcCCHHHHHHHHHHhhccCCc--e
Confidence 588999999999999999999999999988777654321111 2222221 22111122223332 2322111 1
Q ss_pred ccCh---hHhHHHHHHHHhh----CC-cEEEEECCHHHHHHHHHhc
Q 025114 133 STGG---GAVTRPINWRYMQ----KG-ISVWLDVPLEALAQRIAAV 170 (257)
Q Consensus 133 ~lsg---G~~qr~~~a~~l~----~~-~vl~LDep~~~L~~rl~~~ 170 (257)
-|-| -..|...+...+. .+ .+++|+.|.+.+++|+..+
T Consensus 79 ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R 124 (206)
T 3sr0_A 79 IFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGR 124 (206)
T ss_dssp EEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTE
T ss_pred EecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCC
Confidence 1222 1223333333332 22 4889999999999999754
No 216
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=98.38 E-value=1.9e-07 Score=76.78 Aligned_cols=54 Identities=24% Similarity=0.415 Sum_probs=44.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCch
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEG 111 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~ 111 (257)
..+++|+|++||||||+++.|+..+|.+++|.|.+..... .....+++..+|+.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~-~~~~~~i~~~fG~~ 65 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVL-EEVKEKLVELFGGS 65 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHH-HHTHHHHHHHHCGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHH-HHHHHHHHHHhChh
Confidence 4679999999999999999999999999999999877655 22556666666654
No 217
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.37 E-value=3.5e-07 Score=87.73 Aligned_cols=106 Identities=28% Similarity=0.331 Sum_probs=58.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhh---CCceecc--hhhhhhcCCCCCHHHHHH-HhCchHHHHHHHHHHHHhcccCcc
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVL---GYSFFDC--DTLIEQSVDGTSVAEIFK-LYGEGFFREKETEVLQKLSLMRQL 130 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~l---g~~~~d~--~~~~~~~~~~~~v~e~~~-~~g~~~~~~~~~~~l~~l~~~~~~ 130 (257)
|.+|.|+|++||||||+++.|+..+ |..+++. |.+ .. ++.....|. ..++..++.. .++++.+. ....
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i-R~---~L~~~~~fs~~dree~~r~i-~eva~~~l-~~G~ 125 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI-RQ---GLNKNLGFSPEDREENVRRI-AEVAKLFA-DAGL 125 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH-TT---TTTTTCCSSHHHHHHHHHHH-HHHHHHHH-HTTC
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh-hh---ccCccccCChhhhHHHHHHH-HHHHHHHH-hCCC
Confidence 7789999999999999999999988 8766544 433 21 111111111 1122233332 22222211 1112
Q ss_pred ccccChh---HhHHHHHHHHhhC-C---cEEEEECCHHHHHHHHH
Q 025114 131 VVSTGGG---AVTRPINWRYMQK-G---ISVWLDVPLEALAQRIA 168 (257)
Q Consensus 131 v~~lsgG---~~qr~~~a~~l~~-~---~vl~LDep~~~L~~rl~ 168 (257)
++-.+.+ +..+..+..++.. + .+++||.|.+.+.+|+.
T Consensus 126 iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~ 170 (630)
T 1x6v_B 126 VCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDV 170 (630)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCT
T ss_pred EEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhc
Confidence 2222212 2234455555542 2 38899999999999975
No 218
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.37 E-value=2e-07 Score=75.28 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhhhC
Q 025114 56 SGRCIYLVGMMGSGKTTVGKILSGVLG 82 (257)
Q Consensus 56 ~Ge~i~LiG~nGaGKSTLlk~Lag~lg 82 (257)
.|++++|+||||||||||+++|++.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 389999999999999999999999764
No 219
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.35 E-value=1.3e-06 Score=79.97 Aligned_cols=95 Identities=18% Similarity=0.146 Sum_probs=62.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHHHHHHhcccCcccc-ccC
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEVLQKLSLMRQLVV-STG 135 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~~~v~-~ls 135 (257)
..++.|+|++||||||+++.|+..+++.+++.|.+. . ++.....+.+.+......+. ...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~-------~------------~~~~~~~~~~~l~~g~~vIiD~~~ 318 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG-------S------------WQRCVSSCQAALRQGKRVVIDNTN 318 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC-------S------------HHHHHHHHHHHHHTTCCEEEESCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH-------H------------HHHHHHHHHHHHhcCCcEEEeCCC
Confidence 689999999999999999999999999999988641 1 11111122222222222333 233
Q ss_pred hhHhHHHHHHHHhh----CCcEEEEECCHHHHHHHHHhc
Q 025114 136 GGAVTRPINWRYMQ----KGISVWLDVPLEALAQRIAAV 170 (257)
Q Consensus 136 gG~~qr~~~a~~l~----~~~vl~LDep~~~L~~rl~~~ 170 (257)
....++.....++. .-.+++|+.|.+.+.+|+..+
T Consensus 319 ~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R 357 (416)
T 3zvl_A 319 PDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFR 357 (416)
T ss_dssp CSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhh
Confidence 34445555444443 236889999999999998765
No 220
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.34 E-value=1.5e-07 Score=85.30 Aligned_cols=41 Identities=29% Similarity=0.282 Sum_probs=37.5
Q ss_pred cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCc
Q 025114 41 AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYS 84 (257)
Q Consensus 41 ~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~ 84 (257)
..+++++++.+++ |++++|+||||||||||+++|++.++..
T Consensus 156 ~~~l~~~~~~i~~---~~~i~l~G~~GsGKSTl~~~l~~~~~g~ 196 (377)
T 1svm_A 156 YDFLKCMVYNIPK---KRYWLFKGPIDSGKTTLAAALLELCGGK 196 (377)
T ss_dssp HHHHHHHHHCCTT---CCEEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred HHHHHhcccccCC---CCEEEEECCCCCCHHHHHHHHHhhcCCc
Confidence 3689999999999 9999999999999999999999987543
No 221
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.34 E-value=5e-06 Score=72.06 Aligned_cols=37 Identities=35% Similarity=0.450 Sum_probs=32.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQ 94 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~ 94 (257)
..+|+|.|++||||||+++.|+ .+|..+++.|.+...
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~ 111 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHR 111 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHH
Confidence 4579999999999999999999 589999999887543
No 222
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.32 E-value=3.9e-07 Score=83.61 Aligned_cols=46 Identities=26% Similarity=0.290 Sum_probs=37.8
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG 82 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg 82 (257)
-|+++|+ +.|++.. ++++.+ |++++|+||||||||||+++|+++++
T Consensus 6 ~l~~~~~-~~~~~~~-----~~~~~~---~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 6 GLELSNF-KSYRGVT-----KVGFGE---SNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp EEEEESC-SSCCSEE-----EEECTT---CSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEeCE-EEECCce-----eEEecC---CCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 4788899 7887532 245666 89999999999999999999999774
No 223
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.31 E-value=2.5e-07 Score=76.07 Aligned_cols=43 Identities=28% Similarity=0.237 Sum_probs=36.7
Q ss_pred cceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh-CCceecchhhh
Q 025114 47 KSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL-GYSFFDCDTLI 92 (257)
Q Consensus 47 isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l-g~~~~d~~~~~ 92 (257)
+--++.+ |.+++|+|++||||||+++.|++.+ +..+++.|.+.
T Consensus 14 ~~~~~~~---~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~ 57 (207)
T 2qt1_A 14 LVPRGSK---TFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFF 57 (207)
T ss_dssp CCCCSCC---CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGB
T ss_pred ccccCCC---CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccc
Confidence 3345666 9999999999999999999999988 78888888764
No 224
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.30 E-value=4.7e-06 Score=72.52 Aligned_cols=109 Identities=22% Similarity=0.249 Sum_probs=62.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhh--CCceecchhhhhhcCCCCCHHHHHHHhCc-------hHHHHHHHHHHHHh-cc
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVL--GYSFFDCDTLIEQSVDGTSVAEIFKLYGE-------GFFREKETEVLQKL-SL 126 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~l--g~~~~d~~~~~~~~~~~~~v~e~~~~~g~-------~~~~~~~~~~l~~l-~~ 126 (257)
+..+.|+|||||||||+.+.|+..+ +..+++.|.+..... + ..++...+++ .++.......++.+ ..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~~-~--~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~~ 109 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHP-N--FDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQ 109 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTST-T--HHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhch-h--hHHHHHHccchhhhhhhHHHHHHHHHHHHHHHhc
Confidence 7899999999999999999999877 678888876643322 2 1111111111 11222222223222 11
Q ss_pred cCccccccCh-hHhHHHHHHHHhhC-C---cEEEEECCHHHH----HHHHH
Q 025114 127 MRQLVVSTGG-GAVTRPINWRYMQK-G---ISVWLDVPLEAL----AQRIA 168 (257)
Q Consensus 127 ~~~~v~~lsg-G~~qr~~~a~~l~~-~---~vl~LDep~~~L----~~rl~ 168 (257)
....+..... |..++..+...+.+ + .+++++.|.+.. .+|+.
T Consensus 110 g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~ 160 (287)
T 1gvn_B 110 GYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYE 160 (287)
T ss_dssp TCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHH
Confidence 2233433332 33344455444442 2 368899999887 78875
No 225
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.28 E-value=5.4e-07 Score=75.85 Aligned_cols=38 Identities=29% Similarity=0.494 Sum_probs=35.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQ 94 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~ 94 (257)
|.+++|+|++||||||+++.|++.+|..+++.+.+...
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~ 53 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRA 53 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEc
Confidence 88999999999999999999999999999999987653
No 226
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.26 E-value=1.3e-07 Score=88.86 Aligned_cols=39 Identities=28% Similarity=0.181 Sum_probs=36.2
Q ss_pred cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC
Q 025114 41 AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG 82 (257)
Q Consensus 41 ~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg 82 (257)
..+++++++.+++ |++++|+|||||||||++++|++++.
T Consensus 247 ~~~l~~l~~~v~~---g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 247 SGVLAYLWLAIEH---KFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp HHHHHHHHHHHHT---TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHhC---CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999 99999999999999999999999883
No 227
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.25 E-value=1.2e-07 Score=90.96 Aligned_cols=49 Identities=24% Similarity=0.347 Sum_probs=29.9
Q ss_pred ceEEecceeeeeCc--cccccccc----------eEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 27 SVLESGNVHAPIDE--AQVLKNKS----------QEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 27 ~~l~~~~l~~~~~~--~~~l~~is----------l~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
+.++++|+++.|++ +++|+.++ ++++ .++|+||||||||||+++|+|++
T Consensus 9 ~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp------~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 9 GSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALP------AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHSCCSSCCCC------CEECCCCTTSCHHHHHHHHHSCC
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCC------eEEEECCCCChHHHHHHHHhCCC
Confidence 35789999999976 34555553 4444 39999999999999999999986
No 228
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.24 E-value=8.4e-08 Score=85.62 Aligned_cols=52 Identities=19% Similarity=0.165 Sum_probs=47.7
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
.+++.+++.+.|+.+.+++++++.+.. +.+++|+|+||+|||||++.|++.+
T Consensus 29 ~~ie~~~~~~~~~~~~~~~~l~~~~~~---~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 29 TLVESRHPRHQALSTQLLDAIMPYCGN---TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHGGGCSC---SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hHhhcCCchhhhHHHHHHHhCCcccCC---CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357888899999888899999999998 9999999999999999999999876
No 229
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.21 E-value=6.3e-07 Score=79.65 Aligned_cols=33 Identities=33% Similarity=0.294 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhh----CCceecch
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVL----GYSFFDCD 89 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~l----g~~~~d~~ 89 (257)
|++++|+|||||||||+++.|+|++ |.+.+.+.
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~ 165 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAAS 165 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEee
Confidence 9999999999999999999999987 44554443
No 230
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.21 E-value=5e-07 Score=80.03 Aligned_cols=84 Identities=19% Similarity=0.302 Sum_probs=56.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCC-------HH-------------HHHHHhCchHHHHHH
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTS-------VA-------------EIFKLYGEGFFREKE 117 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~-------v~-------------e~~~~~g~~~~~~~~ 117 (257)
..++|+||+|||||||.+.|+..++..+++.|.+.... +++ .. +.+..++...|++.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~--~~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~a 83 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYR--GMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRADA 83 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBT--TCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhc--CCCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHHH
Confidence 47999999999999999999999998888888653211 222 11 122233445677777
Q ss_pred HHHHHHhcccCccccccChhHhHHHH
Q 025114 118 TEVLQKLSLMRQLVVSTGGGAVTRPI 143 (257)
Q Consensus 118 ~~~l~~l~~~~~~v~~lsgG~~qr~~ 143 (257)
.++++.+....+.++..||+.....+
T Consensus 84 ~~~i~~i~~~g~~~IlvGGt~~y~~a 109 (323)
T 3crm_A 84 LAAMAKATARGRIPLLVGGTMLYYKA 109 (323)
T ss_dssp HHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred HHHHHHHHHcCCeEEEECCchhhHHH
Confidence 77777665555667777776544333
No 231
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.20 E-value=7.5e-07 Score=73.64 Aligned_cols=27 Identities=33% Similarity=0.263 Sum_probs=25.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCC
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGY 83 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~ 83 (257)
|++++|+||||||||||++.|++.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 999999999999999999999998753
No 232
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.18 E-value=5.4e-07 Score=84.69 Aligned_cols=51 Identities=18% Similarity=0.129 Sum_probs=42.3
Q ss_pred ccccc-ChhHhHHHHHHHHhh-CC--cEEEEECCHHHH-----------HHHHHhcCCCCccccCCC
Q 025114 130 LVVST-GGGAVTRPINWRYMQ-KG--ISVWLDVPLEAL-----------AQRIAAVGTDSRPLLHQC 181 (257)
Q Consensus 130 ~v~~l-sgG~~qr~~~a~~l~-~~--~vl~LDep~~~L-----------~~rl~~~g~~~~~~~h~~ 181 (257)
++..| |||++||+.+|+++. +| .+++||||+++| +++++. |.++++++|++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~ 458 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLA 458 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCH
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH
Confidence 45566 999999999998765 78 999999999988 455554 78899999994
No 233
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.17 E-value=5e-07 Score=75.89 Aligned_cols=39 Identities=21% Similarity=0.123 Sum_probs=31.3
Q ss_pred eEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCceecchh
Q 025114 49 QEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDT 90 (257)
Q Consensus 49 l~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~ 90 (257)
.+.++ |++++|+|+|||||||++++|++..|...+.+.+
T Consensus 15 ~~~~~---g~~i~i~G~~GsGKSTl~~~L~~~~g~v~~~~~~ 53 (230)
T 2vp4_A 15 AEGTQ---PFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEP 53 (230)
T ss_dssp TTTCC---CEEEEEECSTTSCHHHHHHTTGGGTTTEEEECCT
T ss_pred CCCCC---ceEEEEECCCCCCHHHHHHHHHhccCCeEEEecC
Confidence 34466 9999999999999999999999985545554443
No 234
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=98.16 E-value=2.6e-06 Score=71.93 Aligned_cols=114 Identities=15% Similarity=0.144 Sum_probs=64.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCC-CCC----HHHHHHHhCchHHHHHHHHHHH-HhcccC-c
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVD-GTS----VAEIFKLYGEGFFREKETEVLQ-KLSLMR-Q 129 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~-~~~----v~e~~~~~g~~~~~~~~~~~l~-~l~~~~-~ 129 (257)
.-.++|+|++||||||+.+.|+..+|.+.++.++++..... +.. +.+++. .|.....+...++++ ++.... .
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~-~G~lvpdei~~~ll~~~l~~~~~~ 86 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMD-EGKLVPDSLIIGLVKERLKEADCA 86 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHSGGGT
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHh-hccccccHHHHHHHHHHHhCcccC
Confidence 34689999999999999999999999999999887765321 222 223222 132222222223222 222111 1
Q ss_pred cccccChh---HhHHHHHHHHhhCC-cEEEEECCHHHHHHHHHhcC
Q 025114 130 LVVSTGGG---AVTRPINWRYMQKG-ISVWLDVPLEALAQRIAAVG 171 (257)
Q Consensus 130 ~v~~lsgG---~~qr~~~a~~l~~~-~vl~LDep~~~L~~rl~~~g 171 (257)
.-.-|.|- ..|-..+......+ .+|+||.|.+.+++|+..++
T Consensus 87 ~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~ 132 (230)
T 3gmt_A 87 NGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRR 132 (230)
T ss_dssp TCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEE
T ss_pred CCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCC
Confidence 11112221 12222221111233 58899999999999998653
No 235
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.14 E-value=4.6e-06 Score=68.38 Aligned_cols=27 Identities=33% Similarity=0.374 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCC
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGY 83 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~ 83 (257)
|.+|+|+|++||||||+++.|+..++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 889999999999999999999987653
No 236
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=98.13 E-value=0.00013 Score=60.65 Aligned_cols=28 Identities=32% Similarity=0.439 Sum_probs=24.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhhhC
Q 025114 55 LSGRCIYLVGMMGSGKTTVGKILSGVLG 82 (257)
Q Consensus 55 ~~Ge~i~LiG~nGaGKSTLlk~Lag~lg 82 (257)
|.|.+|+|.|++||||||+.+.|+..+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999999998773
No 237
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.12 E-value=1.4e-06 Score=81.17 Aligned_cols=54 Identities=26% Similarity=0.418 Sum_probs=43.1
Q ss_pred EEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCceec
Q 025114 29 LESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFD 87 (257)
Q Consensus 29 l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d 87 (257)
-+++++...+.....++++++.++. | +.|+||+|+|||||+|.|++..+.+|+.
T Consensus 26 ~~l~e~v~~l~~~~~~~~~g~~~p~---g--vLL~GppGtGKT~Laraia~~~~~~f~~ 79 (476)
T 2ce7_A 26 EELKEVVEFLKDPSKFNRIGARMPK---G--ILLVGPPGTGKTLLARAVAGEANVPFFH 79 (476)
T ss_dssp HHHHHHHHHHHCTHHHHTTTCCCCS---E--EEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHhhChHHHhhcCCCCCC---e--EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 3455555556666678889988887 6 8899999999999999999998876653
No 238
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.11 E-value=3.6e-07 Score=86.48 Aligned_cols=55 Identities=25% Similarity=0.349 Sum_probs=47.0
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCcee
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFF 86 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~ 86 (257)
..-++++.+.|++..++.++++++ + |+++.|+||||+|||||+|+|++.++..+.
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~-~---g~~vll~Gp~GtGKTtlar~ia~~l~~~~~ 137 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSL-K---GPILCLAGPPGVGKTSLAKSIAKSLGRKFV 137 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSC-C---SCEEEEESSSSSSHHHHHHHHHHHHTCEEE
T ss_pred hccHHHHHHHHHHHHHHHHhcccC-C---CCEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 345667777887788899999999 5 999999999999999999999999976543
No 239
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.10 E-value=2.6e-06 Score=77.62 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=23.3
Q ss_pred EecCCCCCcEEEEEcCCCChHHHHHHHHH
Q 025114 50 EIEPYLSGRCIYLVGMMGSGKTTVGKILS 78 (257)
Q Consensus 50 ~i~~~~~Ge~i~LiG~nGaGKSTLlk~La 78 (257)
-|++ |+++.|+||||||||||++.|+
T Consensus 174 GI~~---Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 174 GVET---GSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp SEET---TSEEEEEESTTSSHHHHHHHHH
T ss_pred CcCC---CcEEEEEcCCCCChHHHHHHHH
Confidence 5677 9999999999999999999664
No 240
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.08 E-value=1.2e-05 Score=74.67 Aligned_cols=147 Identities=19% Similarity=0.182 Sum_probs=75.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchh-----hhhhcCCCC-CHHHHHHHhCchHHHHHHHHHHHHhcc----
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDT-----LIEQSVDGT-SVAEIFKLYGEGFFREKETEVLQKLSL---- 126 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~-----~~~~~~~~~-~v~e~~~~~g~~~~~~~~~~~l~~l~~---- 126 (257)
...|.|+|.+||||||+++.|+..+++.+++.+. +..... +. ...++|...++..++.++..++..+..
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~-g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~ 117 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMV-KTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF 117 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHH-CSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhc-cCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999999988765555543 333322 22 223444444554444443322222210
Q ss_pred ---cC--ccccccC-hhHhHHHHHHHHhh--CCcEEEEE---CCHHHHHHHHHhcCCCCccccCCCCCCchhhHHHHHHH
Q 025114 127 ---MR--QLVVSTG-GGAVTRPINWRYMQ--KGISVWLD---VPLEALAQRIAAVGTDSRPLLHQCESGDAYTEALNRLS 195 (257)
Q Consensus 127 ---~~--~~v~~ls-gG~~qr~~~a~~l~--~~~vl~LD---ep~~~L~~rl~~~g~~~~~~~h~~~~~~~~~~~~~~v~ 195 (257)
.. -.+...+ -...+|..+...+. ...+++++ .+...+.+|+.... ..+|...+.+ .+.+.
T Consensus 118 l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~~-~~rp~~~~~~--------~e~~~ 188 (469)
T 1bif_A 118 LSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQVK-LGSPDYVNRD--------SDEAT 188 (469)
T ss_dssp HHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHHT-TTSTTTTTSC--------HHHHH
T ss_pred HHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHhh-hcCCcccCCC--------HHHHH
Confidence 11 1111111 12223333333343 23577777 55666677776421 2234332211 13444
Q ss_pred HHHHHHHHHHhcccceec
Q 025114 196 TLWEERGEAYANANARVS 213 (257)
Q Consensus 196 ~l~~~r~~~y~~~~~~~~ 213 (257)
..+..|...|...-+.++
T Consensus 189 ~~~~~R~~~y~~~ye~l~ 206 (469)
T 1bif_A 189 EDFMRRIECYENSYESLD 206 (469)
T ss_dssp HHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHhccEeEECC
Confidence 666777777765444444
No 241
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.07 E-value=7.7e-06 Score=70.89 Aligned_cols=37 Identities=24% Similarity=0.360 Sum_probs=31.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhh-hCCceecchhhhhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGV-LGYSFFDCDTLIEQ 94 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~-lg~~~~d~~~~~~~ 94 (257)
.++.|+|++||||||+.+.|+.. .+..+++.|.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~~ 40 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQS 40 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHHHH
Confidence 47899999999999999999986 48889999865544
No 242
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.07 E-value=2e-06 Score=70.93 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhC
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLG 82 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg 82 (257)
|++++|+||||||||||++.|++.+.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 99999999999999999999998764
No 243
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.06 E-value=1.7e-06 Score=78.33 Aligned_cols=51 Identities=14% Similarity=0.102 Sum_probs=46.4
Q ss_pred eEEecceeeeeCc-ccccc--------------ccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 28 VLESGNVHAPIDE-AQVLK--------------NKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 28 ~l~~~~l~~~~~~-~~~l~--------------~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
-+.++||++.|.. +.+|+ |+.+.+.+ |+.++|+||+|+|||||++.|++.+
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~r---GQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGR---GQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBT---TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecC---CcEEEEecCCCCChhHHHHHHHHHH
Confidence 5789999999964 66888 89999999 9999999999999999999999865
No 244
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.05 E-value=2.9e-06 Score=71.80 Aligned_cols=37 Identities=24% Similarity=0.463 Sum_probs=33.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIE 93 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~ 93 (257)
.-+++|.||+||||||+++.|+..+|+.+++.+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r 45 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYR 45 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHH
Confidence 4589999999999999999999999999999988753
No 245
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.04 E-value=1.2e-06 Score=76.83 Aligned_cols=30 Identities=23% Similarity=0.361 Sum_probs=26.7
Q ss_pred EecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC
Q 025114 50 EIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG 82 (257)
Q Consensus 50 ~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg 82 (257)
++.. |++++|+||||||||||+++|+|++.
T Consensus 165 ~~l~---geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 165 EYLK---GKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp HHHS---SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred HHhc---CCeEEEECCCCCcHHHHHHHhccccc
Confidence 4455 99999999999999999999999874
No 246
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.02 E-value=8.7e-07 Score=83.00 Aligned_cols=54 Identities=22% Similarity=0.346 Sum_probs=45.7
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCcee
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFF 86 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~ 86 (257)
+.+++++...|....+++++++.++. | +.|+||||+|||||+|.|++.++..++
T Consensus 40 k~~l~~lv~~l~~~~~~~~lg~~ip~---G--vLL~GppGtGKTtLaraIa~~~~~~~i 93 (499)
T 2dhr_A 40 KEELKEIVEFLKNPSRFHEMGARIPK---G--VLLVGPPGVGKTHLARAVAGEARVPFI 93 (499)
T ss_dssp HHHHHHHHHHHHCGGGTTTTSCCCCS---E--EEEECSSSSSHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHhhchhhhhhccCCCCc---e--EEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 45667777777777889999999998 7 899999999999999999998865443
No 247
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.02 E-value=8e-07 Score=78.23 Aligned_cols=30 Identities=20% Similarity=0.218 Sum_probs=26.1
Q ss_pred eEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 49 QEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 49 l~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
+++.+ |++++|+||||||||||+++|+|.+
T Consensus 168 ~~~~~---G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 168 IPHFQ---DKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp GGGGT---TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred HhhcC---CCEEEEECCCCCCHHHHHHHhcccc
Confidence 56677 9999999999999999999999876
No 248
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.01 E-value=1.4e-06 Score=79.92 Aligned_cols=132 Identities=17% Similarity=0.089 Sum_probs=72.0
Q ss_pred ccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC----Cc-----------eecc-hhhhhhcCCCC--CHHHHH
Q 025114 44 LKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG----YS-----------FFDC-DTLIEQSVDGT--SVAEIF 105 (257)
Q Consensus 44 l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg----~~-----------~~d~-~~~~~~~~~~~--~v~e~~ 105 (257)
-++++|+++. ++.++|+|+||||||||+++|++... ++ .++. ..+.-....+. ...+.
T Consensus 147 ~~~i~lelk~---g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~- 222 (416)
T 1udx_A 147 KRRLRLELML---IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEG- 222 (416)
T ss_dssp EEEEEEEECC---SCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGS-
T ss_pred EeeeeeEEcC---CCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhh-
Confidence 4789999999 99999999999999999999998731 11 1111 00000001111 00000
Q ss_pred HHhCchHHHHH--HHHHHHHhcccCccccccChhHhHHHHHHHHhh-CCcEEEEE---CCHHHH----HHHHHhcCCCCc
Q 025114 106 KLYGEGFFREK--ETEVLQKLSLMRQLVVSTGGGAVTRPINWRYMQ-KGISVWLD---VPLEAL----AQRIAAVGTDSR 175 (257)
Q Consensus 106 ~~~g~~~~~~~--~~~~l~~l~~~~~~v~~lsgG~~qr~~~a~~l~-~~~vl~LD---ep~~~L----~~rl~~~g~~~~ 175 (257)
...+..+.+.. ...++..+++..+++..+|+|+.++..+++.+. .|.++++. .+.... .+.+...+.++.
T Consensus 223 ~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi 302 (416)
T 1udx_A 223 KGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVL 302 (416)
T ss_dssp CCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEE
T ss_pred hhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEE
Confidence 00011111110 011122223324567789999999999887665 79888874 222222 233333455666
Q ss_pred cccC
Q 025114 176 PLLH 179 (257)
Q Consensus 176 ~~~h 179 (257)
+++.
T Consensus 303 ~iSA 306 (416)
T 1udx_A 303 PVSA 306 (416)
T ss_dssp ECCT
T ss_pred EEEC
Confidence 6653
No 249
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.01 E-value=2.5e-06 Score=69.98 Aligned_cols=28 Identities=32% Similarity=0.331 Sum_probs=25.8
Q ss_pred ecCCCCCcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 51 IEPYLSGRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 51 i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
..+ |.+++|+|+|||||||+++.|++.+
T Consensus 19 ~~~---~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 19 TAG---RLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CSS---SEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCC---CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 455 8999999999999999999999986
No 250
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=98.00 E-value=0.00016 Score=60.06 Aligned_cols=27 Identities=30% Similarity=0.567 Sum_probs=24.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 55 LSGRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 55 ~~Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
|+|.+|+|.|++||||||+.+.|+..+
T Consensus 1 m~g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 1 MRSKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp -CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999999999877
No 251
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.00 E-value=0.00011 Score=62.05 Aligned_cols=27 Identities=26% Similarity=0.532 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 55 LSGRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 55 ~~Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
|.|.+|+|.|++||||||+++.|+..+
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 348999999999999999999999877
No 252
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.00 E-value=2.8e-06 Score=75.20 Aligned_cols=35 Identities=23% Similarity=0.170 Sum_probs=32.2
Q ss_pred ccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 44 LKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 44 l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
+++++|++.+ +++++|+|+||+||||++..|++.+
T Consensus 95 ~~~l~~~~~~---~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 95 KYRIDFKENR---LNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp -CCCCCCTTS---CEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred ccCccccCCC---CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999888 9999999999999999999999987
No 253
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.99 E-value=1e-06 Score=84.38 Aligned_cols=53 Identities=17% Similarity=0.321 Sum_probs=47.5
Q ss_pred eEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCC
Q 025114 28 VLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGY 83 (257)
Q Consensus 28 ~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~ 83 (257)
.+.-++++..||...+++++++.+.. |+.+.|+||||+|||||++.|++.+..
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~~---g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAANQ---KRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHHT---TCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred cccccccceEECchhhHhhccccccC---CCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 45556777788999999999999999 999999999999999999999998853
No 254
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.94 E-value=7.4e-06 Score=64.28 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=26.1
Q ss_pred cccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 45 KNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 45 ~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
++.++++.+ | +.+|+|||||||||++..|.-.+
T Consensus 15 ~~~~i~f~~---g-~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 15 SDTVVEFKE---G-INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SSEEEECCS---E-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred cceEEEcCC---C-eEEEECCCCCCHHHHHHHHHHHH
Confidence 344555655 4 88999999999999999998554
No 255
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.93 E-value=2.2e-05 Score=72.44 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=33.6
Q ss_pred cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 41 AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 41 ~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
...|+++..-+.+ |+++.|.|++|+|||||+..++...
T Consensus 190 ~~~LD~~~gGl~~---G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 190 FTELDRMTSGFQR---SDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp CHHHHHHHSSBCT---TCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cHHHHhhcCCCCC---CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578888878888 9999999999999999999998754
No 256
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.91 E-value=3.6e-06 Score=67.79 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=22.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
++++|+|+||||||||+++|++++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999986
No 257
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=97.91 E-value=0.00032 Score=59.65 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhh-CCcee
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVL-GYSFF 86 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~l-g~~~~ 86 (257)
+.+|+|.|+.||||||+++.|+..+ +..++
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 7899999999999999999999988 44444
No 258
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=97.89 E-value=0.00045 Score=56.94 Aligned_cols=25 Identities=40% Similarity=0.328 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
|.+|+|=|+-||||||+.+.|+..+
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH
Confidence 5789999999999999999999887
No 259
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.88 E-value=2.3e-06 Score=75.79 Aligned_cols=49 Identities=16% Similarity=0.303 Sum_probs=43.7
Q ss_pred EecceeeeeCccccccccceEecCCCCCcE--EEEEcCCCChHHHHHHHHHhhh
Q 025114 30 ESGNVHAPIDEAQVLKNKSQEIEPYLSGRC--IYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 30 ~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~--i~LiG~nGaGKSTLlk~Lag~l 81 (257)
+.++++..||...+++.++..+.. |++ +.|.||+|+||||+++++++.+
T Consensus 20 rp~~~~~~~g~~~~~~~L~~~i~~---g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 20 RPETLDEVYGQNEVITTVRKFVDE---GKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHT---TCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhc---CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 456677778888899999999998 887 9999999999999999999976
No 260
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.87 E-value=7.5e-06 Score=68.30 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=25.8
Q ss_pred EecCCCCCcEEEEEcCCCChHHHHHHHHHhh
Q 025114 50 EIEPYLSGRCIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 50 ~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
-+++ |++++|+||||||||||++.|++.
T Consensus 20 gi~~---G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 20 GIET---GSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEET---TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcC---CeEEEEECCCCCcHHHHHHHHHHH
Confidence 4777 999999999999999999999993
No 261
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.86 E-value=4.6e-06 Score=73.08 Aligned_cols=24 Identities=29% Similarity=0.302 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
|++++|+||||||||||+++|+ .+
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 8999999999999999999999 76
No 262
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.81 E-value=7.1e-05 Score=62.91 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhC
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLG 82 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg 82 (257)
|.+|+|.|++||||||+.+.|+..+.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999998773
No 263
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.79 E-value=6.4e-06 Score=72.64 Aligned_cols=48 Identities=15% Similarity=0.003 Sum_probs=32.0
Q ss_pred ccccChhHhHHHHHHHHh-hCCcEEEEECCHHHHHHHHHh--cCCCCccccCCC
Q 025114 131 VVSTGGGAVTRPINWRYM-QKGISVWLDVPLEALAQRIAA--VGTDSRPLLHQC 181 (257)
Q Consensus 131 v~~lsgG~~qr~~~a~~l-~~~~vl~LDep~~~L~~rl~~--~g~~~~~~~h~~ 181 (257)
...+|+|++|+.....++ .+++++ ||| ..+.+.++. .+.++..++|+.
T Consensus 139 ~~~ls~g~~Q~~~ad~ill~k~dl~--de~-~~l~~~l~~l~~~~~ii~~sh~~ 189 (318)
T 1nij_A 139 MNQFTIAQSQVGYADRILLTKTDVA--GEA-EKLHERLARINARAPVYTVTHGD 189 (318)
T ss_dssp HHHCHHHHHHHHTCSEEEEECTTTC--SCT-HHHHHHHHHHCSSSCEEECCSSC
T ss_pred HhhchHHHHHHHhCCEEEEECcccC--CHH-HHHHHHHHHhCCCCeEEEecccC
Confidence 346899999988655444 356654 888 666555543 367888888973
No 264
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.71 E-value=1e-05 Score=76.00 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=32.1
Q ss_pred ccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 42 QVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 42 ~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
..++++++++.+ | +.+|+|+||||||||+..|..++
T Consensus 49 ~~~~~~~l~f~~---g-~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 49 ATITQLELELGG---G-FCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp TTBSCEEEECCC---S-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred cceeeEEEecCC---C-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 467899999998 8 99999999999999999997663
No 265
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.68 E-value=2.1e-05 Score=70.05 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=30.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhhhCCceecchhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTL 91 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~ 91 (257)
.+++|+||+|||||||.+.|+..++..+++.|.+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 3799999999999999999999998777777765
No 266
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.68 E-value=2e-05 Score=63.75 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
.++|+|+||||||||++.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999865
No 267
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.68 E-value=1.3e-05 Score=73.64 Aligned_cols=44 Identities=23% Similarity=0.280 Sum_probs=37.8
Q ss_pred ecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 31 SGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 31 ~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
.+++++.|+... ++++|+ + +++++++|+|||||||++..|++.+
T Consensus 79 ~~~L~~~~~~~~--~~i~l~--~---~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 79 YEALKEALGGEA--RLPVLK--D---RNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp HHHHHHHTTSSC--CCCCCC--S---SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCc--ccccCC--C---CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356778887654 788888 6 8999999999999999999999987
No 268
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=97.67 E-value=2.8e-05 Score=62.71 Aligned_cols=51 Identities=8% Similarity=-0.062 Sum_probs=39.2
Q ss_pred ccccccChhHhHHHHHHHHhh-----CCcEEEEECCHHHHH-----------HHHHhcCCCCccccCC
Q 025114 129 QLVVSTGGGAVTRPINWRYMQ-----KGISVWLDVPLEALA-----------QRIAAVGTDSRPLLHQ 180 (257)
Q Consensus 129 ~~v~~lsgG~~qr~~~a~~l~-----~~~vl~LDep~~~L~-----------~rl~~~g~~~~~~~h~ 180 (257)
+.+..||||++|++.+++++. .|.+++||||+++|+ +++. .+.+++.++|+
T Consensus 60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~-~~~~~ivith~ 126 (173)
T 3kta_B 60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESS-KESQFIVITLR 126 (173)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSC
T ss_pred cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhc-cCCEEEEEEec
Confidence 567899999999999998774 358999999999982 3332 23466777787
No 269
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.66 E-value=1.5e-05 Score=65.18 Aligned_cols=32 Identities=31% Similarity=0.428 Sum_probs=27.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecc
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDC 88 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~ 88 (257)
|.+|+|+|++||||||+++.|+..++...++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 88999999999999999999998876544443
No 270
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.66 E-value=2.3e-05 Score=66.31 Aligned_cols=39 Identities=31% Similarity=0.554 Sum_probs=28.0
Q ss_pred cccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCcee
Q 025114 43 VLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFF 86 (257)
Q Consensus 43 ~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~ 86 (257)
.++++++.++. | +.|+||+|+||||+++.|++.++.+++
T Consensus 36 ~~~~~~~~~~~---~--vll~G~~GtGKT~la~~la~~~~~~~~ 74 (257)
T 1lv7_A 36 RFQKLGGKIPK---G--VLMVGPPGTGKTLLAKAIAGEAKVPFF 74 (257)
T ss_dssp GC-----CCCC---E--EEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred HHHHcCCCCCC---e--EEEECcCCCCHHHHHHHHHHHcCCCEE
Confidence 45555665555 4 899999999999999999999876544
No 271
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.66 E-value=3.4e-05 Score=63.53 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=26.7
Q ss_pred cccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC
Q 025114 45 KNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG 82 (257)
Q Consensus 45 ~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg 82 (257)
.+.++++.+ | +.+|+|||||||||++..|.-.++
T Consensus 15 ~~~~i~f~~---~-~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 15 SDTVVEFKE---G-INLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SSEEEECCS---E-EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cceEEEeCC---C-eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 345566665 4 899999999999999999986553
No 272
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.66 E-value=1.1e-05 Score=72.25 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=33.3
Q ss_pred ecceeeeeCc---cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhh
Q 025114 31 SGNVHAPIDE---AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 31 ~~~l~~~~~~---~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
++++.+.|+. ..+|++++++++. |+|+|++|||||||++.|.|.
T Consensus 11 l~~~~~~~~~~~~~~~l~~i~~~lp~------I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 11 IQRACTALGDHGDSSALPTLWDSLPA------IAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp TTTTTTSCSSCCSSCCC----CCCCE------EEEECBTTSSHHHHHHHHHTS
T ss_pred HHHHHHhhCccccccccccccccCCE------EEEECCCCCcHHHHHHHHhCC
Confidence 5566666753 4689999999885 999999999999999999993
No 273
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=97.65 E-value=7.8e-05 Score=70.91 Aligned_cols=105 Identities=23% Similarity=0.270 Sum_probs=57.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhC----C--ceecchhhhhhcCC--CCCHHHHHHHhCchHHHHHHHHHHHHhcccC
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLG----Y--SFFDCDTLIEQSVD--GTSVAEIFKLYGEGFFREKETEVLQKLSLMR 128 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg----~--~~~d~~~~~~~~~~--~~~v~e~~~~~g~~~~~~~~~~~l~~l~~~~ 128 (257)
+.+|.|+|++||||||+++.|+..++ . .++|+|.+...... +.+..+-. ...+ +..++++.+.-..
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~~~~f~~~er~-----~~i~-ri~~v~~~~~~~g 469 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRH-----TNIQ-RIAFVATELTRAG 469 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHHH-----HHHH-HHHHHHHHHHHTT
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhccccCCChhHHH-----HHHH-HHHHHHHHHHhCC
Confidence 67899999999999999999998875 2 46677765332211 11111100 0011 1112333222112
Q ss_pred ccccc--cChhHhHHHHHHHHhhC-C--cEEEEECCHHHHHHHH
Q 025114 129 QLVVS--TGGGAVTRPINWRYMQK-G--ISVWLDVPLEALAQRI 167 (257)
Q Consensus 129 ~~v~~--lsgG~~qr~~~a~~l~~-~--~vl~LDep~~~L~~rl 167 (257)
..+.. ++.-+..|..+..++.. + .+++||.|.+.+.+|.
T Consensus 470 ~~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~ 513 (573)
T 1m8p_A 470 AAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSD 513 (573)
T ss_dssp CEEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHC
T ss_pred CEEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHh
Confidence 22211 22223334444444543 4 6889999999998884
No 274
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.64 E-value=2.5e-05 Score=68.26 Aligned_cols=25 Identities=36% Similarity=0.486 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
|++++|+|+|||||||+++.|++.+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999999876
No 275
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.64 E-value=2.5e-05 Score=63.30 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
.++|+|+||||||||++.|+|..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
No 276
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.57 E-value=3.2e-05 Score=70.21 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=24.8
Q ss_pred EecCCCCCcEEEEEcCCCChHHHHHHHHHh
Q 025114 50 EIEPYLSGRCIYLVGMMGSGKTTVGKILSG 79 (257)
Q Consensus 50 ~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag 79 (257)
.+.. |..++|+|+||||||||+++|+|
T Consensus 16 ~v~~---g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 16 RPGN---NLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSS---CCEEEEEECSSSSHHHHHHHHHH
T ss_pred cccC---CCEEEEECCCCCCHHHHHHHHHC
Confidence 4456 99999999999999999999999
No 277
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.52 E-value=3.8e-05 Score=64.01 Aligned_cols=35 Identities=20% Similarity=0.197 Sum_probs=28.7
Q ss_pred cccccc-ceEecCCCCCcEEEEEcCCCChHHHHHHHHHh
Q 025114 42 QVLKNK-SQEIEPYLSGRCIYLVGMMGSGKTTVGKILSG 79 (257)
Q Consensus 42 ~~l~~i-sl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag 79 (257)
..|+++ .--+++ |+++.|+||||||||||+..++.
T Consensus 10 ~~LD~~l~gGl~~---G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 10 PGVDEILHGGIPE---RNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TTHHHHTTTSEET---TCEEEEEECTTSSHHHHHHHHHH
T ss_pred hhHHHHcCCCCCC---CcEEEEECCCCCCHHHHHHHHHH
Confidence 456666 667888 99999999999999999766654
No 278
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.51 E-value=6.4e-05 Score=67.53 Aligned_cols=53 Identities=15% Similarity=0.044 Sum_probs=37.6
Q ss_pred cccccChhHhHHHHH------HHHhh-C-CcEEEEECCHHHHH--------HHHHh--cCCCCccccCCCC
Q 025114 130 LVVSTGGGAVTRPIN------WRYMQ-K-GISVWLDVPLEALA--------QRIAA--VGTDSRPLLHQCE 182 (257)
Q Consensus 130 ~v~~lsgG~~qr~~~------a~~l~-~-~~vl~LDep~~~L~--------~rl~~--~g~~~~~~~h~~~ 182 (257)
++..+||||++++.+ ++++. + |.+++||||+++|+ +.+.. .+.++..++|+.+
T Consensus 277 ~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~ 347 (371)
T 3auy_A 277 TIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE 347 (371)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG
T ss_pred chHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH
Confidence 356899999999854 44444 7 99999999999982 22322 2346778889843
No 279
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.50 E-value=1.4e-05 Score=71.76 Aligned_cols=45 Identities=22% Similarity=0.203 Sum_probs=35.8
Q ss_pred ceEEecceeeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhh
Q 025114 27 SVLESGNVHAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 27 ~~l~~~~l~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
..+.+.++++.|+++.++++++|+ ++|+|++|+|||||++.|.+.
T Consensus 16 ~~v~~~~l~~~~~~k~~~~~~~~~---------I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 16 GYVGFANLPNQVHRKSVKKGFEFT---------LMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp -----CCHHHHHHTHHHHHCCEEC---------EEECCCTTSCHHHHHHHHTTC
T ss_pred ceEEeccchHHhCCeeecCCCCEE---------EEEEcCCCCCHHHHHHHHhCC
Confidence 458899999999988889988876 479999999999999999764
No 280
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.49 E-value=2e-05 Score=68.91 Aligned_cols=45 Identities=22% Similarity=0.228 Sum_probs=36.9
Q ss_pred ecceeeeeCccccccc-cceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 31 SGNVHAPIDEAQVLKN-KSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 31 ~~~l~~~~~~~~~l~~-isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
.+++.+.|++.. ++ ++++.+ +++++++|+||+||||++..|++.+
T Consensus 77 ~~~l~~~~~~~~--~~~i~~~~~----~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 77 YDELSNLFGGDK--EPKVIPDKI----PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp HHHHHHHTTCSC--CCCCSCSSS----SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred HHHHHHHhcccc--ccccccCCC----CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456777787653 56 777753 7899999999999999999999887
No 281
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.46 E-value=1.9e-05 Score=64.22 Aligned_cols=40 Identities=23% Similarity=0.250 Sum_probs=30.7
Q ss_pred eeeCc-cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHh
Q 025114 36 APIDE-AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSG 79 (257)
Q Consensus 36 ~~~~~-~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag 79 (257)
+.|++ ..+++++|+..+. . .++|+|++|+|||||++.+.+
T Consensus 7 ~~~~~~~~~l~~~~~~~~~---~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 7 WIYSGFSSVLQFLGLYKKT---G-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp ------CHHHHHHTCTTCC---E-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhccCCC---c-EEEEECCCCCCHHHHHHHHhc
Confidence 34544 4689999999886 5 588999999999999999875
No 282
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.46 E-value=6.6e-05 Score=66.83 Aligned_cols=104 Identities=11% Similarity=-0.013 Sum_probs=59.8
Q ss_pred cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCceecchhhhhhcCCCCCHHHHHHHhCchHHHHHHHHH
Q 025114 41 AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTLIEQSVDGTSVAEIFKLYGEGFFREKETEV 120 (257)
Q Consensus 41 ~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~~~~~~~~~~v~e~~~~~g~~~~~~~~~~~ 120 (257)
...|+.+.--+.+ |+++.|.|++|+|||||+..++...-. .+..+.--.. .++..++... ....
T Consensus 33 ~~~LD~~~gGl~~---G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSl-Ems~~ql~~R---------lls~ 96 (338)
T 4a1f_A 33 FVQLDNYTSGFNK---GSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSL-EMSAEQLALR---------ALSD 96 (338)
T ss_dssp CHHHHHHHCSBCT---TCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEES-SSCHHHHHHH---------HHHH
T ss_pred ChHHHHHhcCCCC---CcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeC-CCCHHHHHHH---------HHHH
Confidence 3457777667888 999999999999999999999865410 0000000011 3444433321 1011
Q ss_pred HHHhcccCccccccChhHhHHHHHH-HHhhCCcEEEEECCH
Q 025114 121 LQKLSLMRQLVVSTGGGAVTRPINW-RYMQKGISVWLDVPL 160 (257)
Q Consensus 121 l~~l~~~~~~v~~lsgG~~qr~~~a-~~l~~~~vl~LDep~ 160 (257)
...+.+..-.-..|+.++++++..+ ..+.+..+++.|+|.
T Consensus 97 ~~~v~~~~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~ 137 (338)
T 4a1f_A 97 LTSINMHDLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSY 137 (338)
T ss_dssp HHCCCHHHHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTT
T ss_pred hhCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCC
Confidence 1111111101136888999988877 444566788888884
No 283
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.45 E-value=6.4e-05 Score=60.55 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=20.4
Q ss_pred ccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHh
Q 025114 42 QVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSG 79 (257)
Q Consensus 42 ~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag 79 (257)
.+++++++..+. . .++|+|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~---~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKH---G-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ---------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCc---c-EEEEECCCCCCHHHHHHHHhc
Confidence 478899999886 5 689999999999999999987
No 284
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.43 E-value=6.9e-05 Score=74.08 Aligned_cols=35 Identities=34% Similarity=0.565 Sum_probs=30.7
Q ss_pred eEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCcee
Q 025114 49 QEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFF 86 (257)
Q Consensus 49 l~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~ 86 (257)
|.+.+ ++.+.|+||||||||||+|+|++.++..++
T Consensus 233 l~i~~---~~~vLL~Gp~GtGKTtLarala~~l~~~~i 267 (806)
T 1ypw_A 233 IGVKP---PRGILLYGPPGTGKTLIARAVANETGAFFF 267 (806)
T ss_dssp SCCCC---CCEEEECSCTTSSHHHHHHHHHHTTTCEEE
T ss_pred cCCCC---CCeEEEECcCCCCHHHHHHHHHHHcCCcEE
Confidence 35677 899999999999999999999999987654
No 285
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.43 E-value=7.5e-05 Score=69.99 Aligned_cols=34 Identities=15% Similarity=0.193 Sum_probs=30.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCC-------ceecchh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGY-------SFFDCDT 90 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~-------~~~d~~~ 90 (257)
|.+|.|+|++||||||+++.|+..++. .++|+|.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 789999999999999999999999985 5778775
No 286
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.40 E-value=8.2e-05 Score=64.78 Aligned_cols=35 Identities=23% Similarity=0.406 Sum_probs=30.0
Q ss_pred eEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCcee
Q 025114 49 QEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFF 86 (257)
Q Consensus 49 l~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~ 86 (257)
+.+.+ +..+.|.||+|+|||||++.|++.++..++
T Consensus 44 ~~~~~---~~~vLL~Gp~GtGKT~la~ala~~~~~~~i 78 (301)
T 3cf0_A 44 FGMTP---SKGVLFYGPPGCGKTLLAKAIANECQANFI 78 (301)
T ss_dssp HCCCC---CSEEEEECSSSSSHHHHHHHHHHHTTCEEE
T ss_pred cCCCC---CceEEEECCCCcCHHHHHHHHHHHhCCCEE
Confidence 34566 888999999999999999999999876554
No 287
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.40 E-value=7.7e-05 Score=59.11 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
|..++|+|++|+|||||++.|.+..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 7889999999999999999999853
No 288
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.37 E-value=2.7e-06 Score=76.45 Aligned_cols=52 Identities=12% Similarity=-0.153 Sum_probs=39.1
Q ss_pred cccc-ccChhHhHHHHHHHHhh----------CCcEEEEECCHHHHH--------HHHHhcCCCCccccCC
Q 025114 129 QLVV-STGGGAVTRPINWRYMQ----------KGISVWLDVPLEALA--------QRIAAVGTDSRPLLHQ 180 (257)
Q Consensus 129 ~~v~-~lsgG~~qr~~~a~~l~----------~~~vl~LDep~~~L~--------~rl~~~g~~~~~~~h~ 180 (257)
+++. .+||||+|++.++..+. +|++++||||+++|+ +.+...+.+++.++|.
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~ 330 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL 330 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec
Confidence 5676 79999999999997765 699999999999983 3333323456666773
No 289
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.37 E-value=9.1e-05 Score=66.10 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
+.+++|+|++|||||||++.|.+.+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999999865
No 290
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.37 E-value=4e-05 Score=66.73 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhC-----Cceecchhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLG-----YSFFDCDTLI 92 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg-----~~~~d~~~~~ 92 (257)
.-+|+|.|++||||||+.+.|+..+| ..+++.|.+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 56899999999999999999998776 5778887764
No 291
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.34 E-value=9.2e-05 Score=58.06 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=21.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
-.++|+|++|+|||||++.+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999974
No 292
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=97.32 E-value=0.00045 Score=65.31 Aligned_cols=37 Identities=32% Similarity=0.662 Sum_probs=31.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCC-----ceecchhhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGY-----SFFDCDTLIE 93 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~-----~~~d~~~~~~ 93 (257)
+.++.|+|++||||||+.+.|+..++. .++|+|.+..
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~ 413 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRT 413 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhh
Confidence 678999999999999999999987753 6788876543
No 293
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.30 E-value=0.00014 Score=64.01 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=30.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhhhCCceecchhh
Q 025114 56 SGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTL 91 (257)
Q Consensus 56 ~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~ 91 (257)
.+.+++|+||+|||||||.+.|+..++..++..|.+
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 467899999999999999999999887666655543
No 294
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.29 E-value=6.2e-05 Score=61.52 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=22.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhC
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVLG 82 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~lg 82 (257)
+|+|.|++||||||+++.|+..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998874
No 295
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.27 E-value=0.00015 Score=58.37 Aligned_cols=25 Identities=32% Similarity=0.268 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
-.+++|+|++|||||||++.|.+.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999999875
No 296
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.27 E-value=9.7e-05 Score=64.48 Aligned_cols=25 Identities=32% Similarity=0.280 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
+.+++|+|++|+|||||++.|.|..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 4589999999999999999999853
No 297
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.24 E-value=0.00022 Score=58.71 Aligned_cols=47 Identities=19% Similarity=0.213 Sum_probs=36.0
Q ss_pred eCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCceecch
Q 025114 38 IDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCD 89 (257)
Q Consensus 38 ~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~ 89 (257)
+.....++..-+.+. |..+.|+||+|+|||||...|+.... .++..|
T Consensus 19 ~a~~~~lHa~~v~~~----g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 19 LAERRSMHGVLVDIY----GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp --CCCCEESEEEEET----TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred cCcceeeeEEEEEEC----CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 344556777777776 78999999999999999999998765 444444
No 298
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.21 E-value=0.00017 Score=57.22 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=21.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
-.++|+|++|+|||||++.|++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999974
No 299
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=97.19 E-value=0.0025 Score=52.00 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
+|+|=|+-||||||..+.|+..+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999877
No 300
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.18 E-value=0.00017 Score=58.65 Aligned_cols=23 Identities=35% Similarity=0.358 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
.|+|+||+|||||||.+.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999999997654
No 301
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.17 E-value=0.00017 Score=63.31 Aligned_cols=34 Identities=29% Similarity=0.491 Sum_probs=29.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDT 90 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~ 90 (257)
...++|+||+|||||||...|+..++..++..|.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 4579999999999999999999998766666654
No 302
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.14 E-value=0.00019 Score=65.59 Aligned_cols=51 Identities=16% Similarity=-0.061 Sum_probs=39.2
Q ss_pred cccccChhHhHHHHHHHHhh-----CCcEEEEECCHHHHH-----------HHHHhcCCCCccccCC
Q 025114 130 LVVSTGGGAVTRPINWRYMQ-----KGISVWLDVPLEALA-----------QRIAAVGTDSRPLLHQ 180 (257)
Q Consensus 130 ~v~~lsgG~~qr~~~a~~l~-----~~~vl~LDep~~~L~-----------~rl~~~g~~~~~~~h~ 180 (257)
.+..|||||++++.++.++. .|++++||||+++|+ +++...+.+++.++|+
T Consensus 330 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~ 396 (430)
T 1w1w_A 330 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLK 396 (430)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSC
T ss_pred ccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECC
Confidence 35569999999999998775 589999999999982 2222224577888887
No 303
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.11 E-value=0.00019 Score=57.20 Aligned_cols=22 Identities=41% Similarity=0.484 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|++|+|||||++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999985
No 304
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.07 E-value=9.1e-05 Score=64.06 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=32.5
Q ss_pred CccccccccceEecCCC--------CCcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 39 DEAQVLKNKSQEIEPYL--------SGRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 39 ~~~~~l~~isl~i~~~~--------~Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
|...+++.+...+...- +...+.|.||+|+||||+++.|++.+
T Consensus 21 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 21 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp SCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 55566666766665500 01579999999999999999999987
No 305
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.06 E-value=0.0004 Score=59.77 Aligned_cols=30 Identities=23% Similarity=0.442 Sum_probs=26.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCcee
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFF 86 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~ 86 (257)
+..+.|.||+|+||||+++.+++.++..++
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~~ 83 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSATFL 83 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence 678999999999999999999999876554
No 306
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.00 E-value=0.00056 Score=59.99 Aligned_cols=38 Identities=11% Similarity=0.055 Sum_probs=31.9
Q ss_pred cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 41 AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 41 ~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
...|+++.--+.+ |+++.|.|++|+|||||+..++...
T Consensus 55 ~~~LD~~lgGl~~---G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 55 FTELDRMTYGYKR---RNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CHHHHHHHSSBCT---TCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHhhcCCCCC---CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4467777766888 9999999999999999999988543
No 307
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.00 E-value=0.00036 Score=63.38 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=28.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecchh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDT 90 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~ 90 (257)
..+++|+||+|||||||.+.|+..++..++..|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 3578999999999999999999988766666554
No 308
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.99 E-value=0.00042 Score=55.55 Aligned_cols=24 Identities=29% Similarity=0.248 Sum_probs=22.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
.+++|+|++|||||||+..|+..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 479999999999999999999876
No 309
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.98 E-value=0.00042 Score=59.21 Aligned_cols=31 Identities=29% Similarity=0.405 Sum_probs=27.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceec
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFD 87 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d 87 (257)
+..+.|.||+|+|||||++.++..++..++.
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~~~~~~~ 81 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATETNATFIR 81 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 6679999999999999999999998876543
No 310
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.96 E-value=0.00041 Score=62.10 Aligned_cols=29 Identities=28% Similarity=0.278 Sum_probs=26.1
Q ss_pred EecCCCCCcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 50 EIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 50 ~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
-+++ |+++.|.||||||||||+..++...
T Consensus 57 Gi~~---G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 57 GYPR---GRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp SEET---TEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccC---CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4667 9999999999999999999999865
No 311
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.94 E-value=0.00035 Score=61.51 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
..+.|.||||+||||+++.|++.+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 349999999999999999999943
No 312
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.92 E-value=0.0012 Score=59.03 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=26.8
Q ss_pred cccccceEecCCCCCcEEEEEcCCCChHHHHHHHHH
Q 025114 43 VLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILS 78 (257)
Q Consensus 43 ~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~La 78 (257)
.+++..+++.+ | +.+|+|+|||||||++..|.
T Consensus 15 ~~~~~~i~f~~---g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 15 SHVNSRIKFEK---G-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp TEEEEEEECCS---E-EEEEEECTTSSHHHHHHHHH
T ss_pred cccceEEecCC---C-eEEEECCCCCCHHHHHHHHH
Confidence 34667777775 4 89999999999999999997
No 313
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.91 E-value=0.00047 Score=57.53 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=21.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
-.|+|+|++|+|||||++.|.|..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 358999999999999999999854
No 314
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.90 E-value=0.00075 Score=56.64 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCcee
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFF 86 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~ 86 (257)
...+.|.||+|+||||+++.++..++.+++
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~~~~~ 68 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQVPFL 68 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 456899999999999999999998876654
No 315
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.87 E-value=0.00047 Score=60.63 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=38.4
Q ss_pred eCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCceecchh
Q 025114 38 IDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDT 90 (257)
Q Consensus 38 ~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~ 90 (257)
+.....++...+.+. |.-+.|+|++|+||||+...|.+. |..++..|.
T Consensus 129 ~~~~~~~H~~~v~~~----g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD~ 176 (314)
T 1ko7_A 129 LARTTSLHGVLVDVY----GVGVLITGDSGIGKSETALELIKR-GHRLVADDN 176 (314)
T ss_dssp TCEEEEEESEEEEET----TEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSE
T ss_pred hccceeeeEEEEEEC----CEEEEEEeCCCCCHHHHHHHHHhc-CCceecCCe
Confidence 345568889888885 889999999999999999999875 666664443
No 316
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.85 E-value=0.00095 Score=53.72 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=35.4
Q ss_pred cccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCceecchhh
Q 025114 41 AQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTL 91 (257)
Q Consensus 41 ~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~ 91 (257)
+..++..-+.+. |.-+.|.|++|+||||+...|.. -|+.++..|..
T Consensus 4 ~~~lHas~v~v~----G~gvli~G~SGaGKStlal~L~~-rG~~lvaDD~v 49 (181)
T 3tqf_A 4 KQTWHANFLVID----KMGVLITGEANIGKSELSLALID-RGHQLVCDDVI 49 (181)
T ss_dssp CEEEESEEEEET----TEEEEEEESSSSSHHHHHHHHHH-TTCEEEESSEE
T ss_pred cEEEEEEEEEEC----CEEEEEEcCCCCCHHHHHHHHHH-cCCeEecCCEE
Confidence 455676777776 88899999999999999998876 36666655543
No 317
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.84 E-value=0.00069 Score=55.70 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhC
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLG 82 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg 82 (257)
+..+.|.||+|+||||+++.++..+.
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 78899999999999999999998763
No 318
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.80 E-value=0.00054 Score=66.23 Aligned_cols=33 Identities=36% Similarity=0.326 Sum_probs=27.0
Q ss_pred ceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCC
Q 025114 48 SQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGY 83 (257)
Q Consensus 48 sl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~ 83 (257)
|+++.. +.+++|+|++|+|||||++.|++..+.
T Consensus 3 s~~~~~---~~~i~IiG~~gaGKTTLl~~L~~~~~~ 35 (665)
T 2dy1_A 3 TEGGAM---IRTVALVGHAGSGKTTLTEALLYKTGA 35 (665)
T ss_dssp ---CCC---EEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCccCC---CcEEEEECCCCChHHHHHHHHHHhcCC
Confidence 455666 899999999999999999999987654
No 319
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.78 E-value=0.0003 Score=57.43 Aligned_cols=41 Identities=27% Similarity=0.487 Sum_probs=30.9
Q ss_pred CccccccccceEecCCCCCc---EEEEEcCCCChHHHHHHHHHhhhC
Q 025114 39 DEAQVLKNKSQEIEPYLSGR---CIYLVGMMGSGKTTVGKILSGVLG 82 (257)
Q Consensus 39 ~~~~~l~~isl~i~~~~~Ge---~i~LiG~nGaGKSTLlk~Lag~lg 82 (257)
|...+++.+.-.+.. +. .+.|.||+|+||||+++.++..++
T Consensus 27 g~~~~~~~l~~~l~~---~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 27 GQEHVLTALANGLSL---GRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SCHHHHHHHHHHHHH---TCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 444455555555555 44 799999999999999999998764
No 320
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.76 E-value=0.00037 Score=68.83 Aligned_cols=37 Identities=22% Similarity=0.366 Sum_probs=31.1
Q ss_pred cceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCcee
Q 025114 47 KSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFF 86 (257)
Q Consensus 47 isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~ 86 (257)
.++.+.+ +..+.|+||||+|||||+|.|++.++..++
T Consensus 504 ~~~~~~~---~~~vLL~GppGtGKT~Lakala~~~~~~~i 540 (806)
T 1ypw_A 504 LKFGMTP---SKGVLFYGPPGCGKTLLAKAIANECQANFI 540 (806)
T ss_dssp TCCCCCC---CCCCCCBCCTTSSHHHHHHHHHHHHTCCCC
T ss_pred HhcCCCC---CceeEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3556667 889999999999999999999999875544
No 321
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.75 E-value=0.00034 Score=59.23 Aligned_cols=38 Identities=37% Similarity=0.585 Sum_probs=29.4
Q ss_pred ccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCcee
Q 025114 44 LKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFF 86 (257)
Q Consensus 44 l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~ 86 (257)
+.++++.... | +.|.||+|+|||||++.|+..++.+++
T Consensus 36 ~~~~~~~~~~---~--vll~G~~GtGKT~la~~la~~~~~~~~ 73 (268)
T 2r62_A 36 YANLGAKIPK---G--VLLVGPPGTGKTLLAKAVAGEAHVPFF 73 (268)
T ss_dssp HHHHSCCCCS---C--CCCBCSSCSSHHHHHHHHHHHHTCCCC
T ss_pred HHHCCCCCCc---e--EEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 4444555554 4 789999999999999999998876544
No 322
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.74 E-value=0.0007 Score=62.07 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=21.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
-.++|+|+||+|||||++.|.|..
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 379999999999999999999864
No 323
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.73 E-value=0.00047 Score=60.46 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=33.3
Q ss_pred eCccccccccceEecCCCCC--cEEEEEcCCCChHHHHHHHHHhhhC
Q 025114 38 IDEAQVLKNKSQEIEPYLSG--RCIYLVGMMGSGKTTVGKILSGVLG 82 (257)
Q Consensus 38 ~~~~~~l~~isl~i~~~~~G--e~i~LiG~nGaGKSTLlk~Lag~lg 82 (257)
+|...+++.+...+.. | ..+.|.||+|+||||+++.+++.++
T Consensus 40 ~g~~~~~~~l~~~l~~---~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 40 TAQDHAVTVLKKTLKS---ANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CSCCTTHHHHHHHTTC---TTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhc---CCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4555667777776766 5 4599999999999999999998763
No 324
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.73 E-value=0.00083 Score=57.31 Aligned_cols=24 Identities=38% Similarity=0.505 Sum_probs=21.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
-.++|+|++|||||||++.|.|..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999864
No 325
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.73 E-value=0.00089 Score=59.04 Aligned_cols=25 Identities=36% Similarity=0.590 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
+..+.|.||+|+|||||++.+++.+
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999876
No 326
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.72 E-value=0.0013 Score=64.61 Aligned_cols=33 Identities=15% Similarity=0.106 Sum_probs=25.7
Q ss_pred ccccccChhHhHHHHHHHH-hhCCcEEEEECCHH
Q 025114 129 QLVVSTGGGAVTRPINWRY-MQKGISVWLDVPLE 161 (257)
Q Consensus 129 ~~v~~lsgG~~qr~~~a~~-l~~~~vl~LDep~~ 161 (257)
..+.-++.|+.++..+... +.+..++++||+.+
T Consensus 186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~ 219 (773)
T 2xau_A 186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHE 219 (773)
T ss_dssp CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGG
T ss_pred CCEEEECHHHHHHHHhhCccccCCCEEEecCccc
Confidence 3466778899988877744 34789999999986
No 327
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.72 E-value=0.0011 Score=57.51 Aligned_cols=31 Identities=16% Similarity=0.134 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceec
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFD 87 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d 87 (257)
...+.|.||+|+|||+|++.|+..++..++.
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~~i~ 66 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGINPIM 66 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 3467788999999999999999999876553
No 328
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.70 E-value=0.001 Score=53.80 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=22.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
..+.|.||+|+|||||++.|+..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999866
No 329
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.69 E-value=0.00071 Score=60.68 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
+++|+|++|||||||++.|++..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 49999999999999999999854
No 330
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.68 E-value=0.00096 Score=55.80 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
|.+|+|.|+.||||||+++.|+..+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 6789999999999999999999988
No 331
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.68 E-value=0.0011 Score=52.04 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
+..+.|.||.|+||||+++.++..+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 5679999999999999999999876
No 332
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.68 E-value=0.001 Score=61.17 Aligned_cols=32 Identities=25% Similarity=0.527 Sum_probs=28.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhhhCCceecch
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGVLGYSFFDCD 89 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~ 89 (257)
..+.|+||+|+||||+.+.|++.++.+++..+
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~ 82 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence 45889999999999999999999998877654
No 333
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.67 E-value=0.00098 Score=59.43 Aligned_cols=29 Identities=34% Similarity=0.335 Sum_probs=25.2
Q ss_pred EecCCCCCcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 50 EIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 50 ~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
-+++ |+++.|.||||+|||||+..++...
T Consensus 57 Gl~~---G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 57 GLPR---GRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp SEET---TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccC---CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4667 9999999999999999988887543
No 334
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.67 E-value=0.001 Score=59.13 Aligned_cols=33 Identities=36% Similarity=0.512 Sum_probs=28.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecch
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCD 89 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~ 89 (257)
+..+.|.||+|+||||+.+.|+..++.+++..+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~ 83 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLDVPFTMAD 83 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEec
Confidence 567999999999999999999999987776543
No 335
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.001 Score=52.94 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
.-.++|+|++|+|||||++.|.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3479999999999999999998743
No 336
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.64 E-value=0.00044 Score=60.55 Aligned_cols=44 Identities=23% Similarity=0.269 Sum_probs=34.7
Q ss_pred CccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCce
Q 025114 39 DEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSF 85 (257)
Q Consensus 39 ~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~ 85 (257)
|...+++.+...+.. |..+.|.||+|+|||+|++.|+..++..+
T Consensus 31 g~~~~~~~l~~~l~~---~~~vll~G~pGtGKT~la~~la~~~~~~~ 74 (331)
T 2r44_A 31 GQKYMINRLLIGICT---GGHILLEGVPGLAKTLSVNTLAKTMDLDF 74 (331)
T ss_dssp SCHHHHHHHHHHHHH---TCCEEEESCCCHHHHHHHHHHHHHTTCCE
T ss_pred CcHHHHHHHHHHHHc---CCeEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 444455666666666 77899999999999999999999887553
No 337
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.64 E-value=0.0011 Score=57.78 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
+..+.|.||+|+|||||++.|++.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4679999999999999999999877
No 338
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.63 E-value=0.00081 Score=60.99 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
+..++|+|+||+|||||++.|++.
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 788999999999999999999986
No 339
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.62 E-value=0.0012 Score=51.01 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.+.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 340
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.62 E-value=0.0013 Score=54.73 Aligned_cols=27 Identities=37% Similarity=0.432 Sum_probs=25.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCC
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGY 83 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~ 83 (257)
|.+|+|.|+.||||||+.+.|+..++.
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 899999999999999999999998874
No 341
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.61 E-value=0.00094 Score=61.29 Aligned_cols=25 Identities=44% Similarity=0.462 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
+.+++++|++||||||++..|+..+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999999877
No 342
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.60 E-value=0.0012 Score=53.24 Aligned_cols=24 Identities=38% Similarity=0.347 Sum_probs=20.1
Q ss_pred CCcEEEEEcCCCChHHHHH-HHHHh
Q 025114 56 SGRCIYLVGMMGSGKTTVG-KILSG 79 (257)
Q Consensus 56 ~Ge~i~LiG~nGaGKSTLl-k~Lag 79 (257)
+|.++.+.||+|+||||++ +++..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999997 44443
No 343
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.60 E-value=0.0013 Score=50.50 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
No 344
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.60 E-value=0.0013 Score=54.91 Aligned_cols=26 Identities=38% Similarity=0.510 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhC
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLG 82 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg 82 (257)
|.+|+|.|++||||||+.+.|+..++
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 88999999999999999999998764
No 345
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.59 E-value=0.0012 Score=50.54 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++++|+.|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 346
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.59 E-value=0.0011 Score=59.63 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
+..++|+|++||||||+++.|+..+
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHH
Confidence 6689999999999999999998754
No 347
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.55 E-value=0.0014 Score=50.36 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
-.++|+|+.|+|||||++.+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 348
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.54 E-value=0.0014 Score=58.04 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=23.3
Q ss_pred Cc--EEEEEcCCCChHHHHHHHHHhhh
Q 025114 57 GR--CIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 57 Ge--~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
+. .+.|.||+|+|||||++.+++.+
T Consensus 42 ~~~~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 42 HHYPRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 46 89999999999999999999987
No 349
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.54 E-value=0.0014 Score=50.67 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 025114 59 CIYLVGMMGSGKTTVGKILSG 79 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag 79 (257)
.++|+|+.|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999986
No 350
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.53 E-value=0.0013 Score=51.15 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.+.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5899999999999999999864
No 351
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.53 E-value=0.0015 Score=50.50 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
.++|+|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 352
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.0018 Score=59.30 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=27.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecc
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDC 88 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~ 88 (257)
..-+.|.||+|+|||+|.|.||+.++..|+..
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 34589999999999999999999999876644
No 353
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.52 E-value=0.0015 Score=50.53 Aligned_cols=22 Identities=23% Similarity=0.123 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 354
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.0018 Score=59.39 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecc
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDC 88 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~ 88 (257)
..-+.|.||+|+|||+|.+.+|+.++.+|+..
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 45589999999999999999999999876643
No 355
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.51 E-value=0.0015 Score=50.32 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 356
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.50 E-value=0.0015 Score=50.97 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.+.+.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998864
No 357
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.0018 Score=59.40 Aligned_cols=32 Identities=28% Similarity=0.478 Sum_probs=27.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecc
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDC 88 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~ 88 (257)
..-+.|.||+|+|||+|.|.||+.++.+|+..
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v 246 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIGANFIFS 246 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 44589999999999999999999999876643
No 358
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.49 E-value=0.0014 Score=50.70 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
.++|+|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 48999999999999999998643
No 359
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.49 E-value=0.0016 Score=50.80 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 360
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.48 E-value=0.0015 Score=50.42 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999863
No 361
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.47 E-value=0.0014 Score=51.53 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
...+.|.||+|+||||+++.++..+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999999876
No 362
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.47 E-value=0.0016 Score=50.05 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 363
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.47 E-value=0.001 Score=51.34 Aligned_cols=21 Identities=33% Similarity=0.716 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 025114 59 CIYLVGMMGSGKTTVGKILSG 79 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag 79 (257)
.++|+|++|+|||||++.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999999875
No 364
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.47 E-value=0.0014 Score=56.35 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=21.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
-.++|+|++|+|||||++.|.|.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999999985
No 365
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.45 E-value=0.0017 Score=49.85 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=20.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
-.++|+|+.|+|||||++.+.+-
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999998863
No 366
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.45 E-value=0.0021 Score=50.14 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.-.++|+|+.|+|||||++.+.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 567999999999999999999863
No 367
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.44 E-value=0.002 Score=55.17 Aligned_cols=30 Identities=27% Similarity=0.509 Sum_probs=26.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCcee
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFF 86 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~ 86 (257)
+..+.|.||+|+||||+++.++..++..++
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~ 79 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFI 79 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 456899999999999999999999876554
No 368
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.44 E-value=0.0017 Score=50.68 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 369
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.43 E-value=0.0021 Score=54.60 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=26.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceec
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFD 87 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d 87 (257)
...+.|.||+|+||||+++.++..++.+++.
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~ 94 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEESNFPFIK 94 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHTCSEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 4578999999999999999999998876553
No 370
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.43 E-value=0.0021 Score=49.48 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
+..+.|.||+|+|||++.+.|+...
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 6779999999999999999999865
No 371
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.43 E-value=0.0011 Score=52.58 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.-.++|+|++|+|||||++.+.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999864
No 372
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.41 E-value=0.0019 Score=57.65 Aligned_cols=32 Identities=31% Similarity=0.368 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecc
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDC 88 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~ 88 (257)
...+.|.||+|+||||+++.|+..++.+++..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~ 103 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAIS 103 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 45689999999999999999999998766543
No 373
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.41 E-value=0.0015 Score=51.94 Aligned_cols=24 Identities=25% Similarity=0.120 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
--.++|+|+.|+|||||++.|.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346999999999999999999864
No 374
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.40 E-value=0.0019 Score=51.21 Aligned_cols=23 Identities=35% Similarity=0.125 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
.++|+|+.|+|||||++.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 48999999999999999998865
No 375
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.40 E-value=0.0019 Score=49.71 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 025114 59 CIYLVGMMGSGKTTVGKILSG 79 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag 79 (257)
.++|+|+.|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999986
No 376
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.39 E-value=0.0016 Score=51.56 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=21.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
-.++|+|+.|+|||||++.+.+.-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 369999999999999999998753
No 377
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.38 E-value=0.0014 Score=54.64 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=22.2
Q ss_pred EecCCCCCcEEEEEcCCCChHHHHHHHHH
Q 025114 50 EIEPYLSGRCIYLVGMMGSGKTTVGKILS 78 (257)
Q Consensus 50 ~i~~~~~Ge~i~LiG~nGaGKSTLlk~La 78 (257)
.+.. |+.++++||+||||||++..+.
T Consensus 72 ~i~~---g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 72 AISQ---NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHH---CSEEEEECCTTSSHHHHHHHHH
T ss_pred HHhc---CCEEEEEeCCCCCcHHhHHHHH
Confidence 3455 9999999999999999888765
No 378
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.38 E-value=0.0018 Score=54.63 Aligned_cols=24 Identities=38% Similarity=0.627 Sum_probs=21.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
-.|+|+|.+|+|||||++.|.|.-
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 458999999999999999998753
No 379
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.38 E-value=0.00072 Score=62.30 Aligned_cols=48 Identities=27% Similarity=0.394 Sum_probs=35.4
Q ss_pred eeCccccc---cccceEecCCCCCc--EEEEEcCCCChHHHHHHHHHhhhCCceec
Q 025114 37 PIDEAQVL---KNKSQEIEPYLSGR--CIYLVGMMGSGKTTVGKILSGVLGYSFFD 87 (257)
Q Consensus 37 ~~~~~~~l---~~isl~i~~~~~Ge--~i~LiG~nGaGKSTLlk~Lag~lg~~~~d 87 (257)
-+|...++ +.+.-.+.. |. .+.|.||+|+|||||++.|+..++..++.
T Consensus 28 ivGq~~~~~~~~~L~~~i~~---~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~ 80 (447)
T 3pvs_A 28 YIGQQHLLAAGKPLPRAIEA---GHLHSMILWGPPGTGKTTLAEVIARYANADVER 80 (447)
T ss_dssp CCSCHHHHSTTSHHHHHHHH---TCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred hCCcHHHHhchHHHHHHHHc---CCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence 34444455 455555655 55 48999999999999999999998776543
No 380
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.0021 Score=58.39 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=26.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhhhCCceecc
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVLGYSFFDC 88 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~ 88 (257)
-+.|.||+|+|||+|.|.+|+.++.+|+..
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred ceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 488999999999999999999999877643
No 381
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.38 E-value=0.002 Score=50.69 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 382
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.37 E-value=0.002 Score=51.06 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 383
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.37 E-value=0.002 Score=50.80 Aligned_cols=22 Identities=27% Similarity=0.209 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.+.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 384
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.37 E-value=0.0021 Score=49.77 Aligned_cols=23 Identities=35% Similarity=0.405 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSG 79 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag 79 (257)
.-.++|+|+.|+|||||++.+.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999976
No 385
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.36 E-value=0.002 Score=51.25 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
No 386
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.36 E-value=0.0021 Score=50.12 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999863
No 387
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.35 E-value=0.0017 Score=51.31 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4889999999999999999874
No 388
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.35 E-value=0.0015 Score=51.08 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999763
No 389
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.33 E-value=0.0022 Score=49.28 Aligned_cols=22 Identities=36% Similarity=0.330 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.+.+-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999763
No 390
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.33 E-value=0.0027 Score=55.55 Aligned_cols=31 Identities=29% Similarity=0.440 Sum_probs=26.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceec
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFD 87 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d 87 (257)
...+.|.||+|+|||+|++.++..++..++.
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~ 81 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANSTFFS 81 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCCCEEE
Confidence 4569999999999999999999998876553
No 391
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.32 E-value=0.0022 Score=50.24 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
-.++|+|+.|+|||||++.+.+.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 35899999999999999999863
No 392
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.31 E-value=0.0023 Score=49.83 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.+.+.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 393
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.31 E-value=0.0022 Score=49.95 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 394
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.31 E-value=0.0023 Score=50.76 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|..|+|||||++.|.+.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 395
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.30 E-value=0.0029 Score=56.27 Aligned_cols=30 Identities=40% Similarity=0.672 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCcee
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFF 86 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~ 86 (257)
...+.|.||+|+|||||++.|+..++..++
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~~~~~ 146 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSGATFF 146 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 567999999999999999999999887654
No 396
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.29 E-value=0.0024 Score=50.88 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=18.7
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 025114 59 CIYLVGMMGSGKTTVGKILSG 79 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag 79 (257)
.++|+|++|+|||||++.+.+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999977665
No 397
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.28 E-value=0.0029 Score=55.51 Aligned_cols=30 Identities=33% Similarity=0.484 Sum_probs=25.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhh-CCcee
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVL-GYSFF 86 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~l-g~~~~ 86 (257)
...+.|.||+|+|||||++.++..+ +..++
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~ 75 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEANNSTFF 75 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTSCEEE
T ss_pred CceEEEECCCCccHHHHHHHHHHHcCCCcEE
Confidence 5679999999999999999999987 55443
No 398
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.28 E-value=0.0024 Score=49.89 Aligned_cols=22 Identities=32% Similarity=0.294 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.+.+.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 399
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.28 E-value=0.0023 Score=51.99 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
-.++|+|+.|+|||||++.|.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998754
No 400
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.25 E-value=0.0024 Score=50.24 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.+.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 401
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.25 E-value=0.0026 Score=49.75 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.+.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 402
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.25 E-value=0.0024 Score=50.51 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
No 403
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.24 E-value=0.0028 Score=56.22 Aligned_cols=28 Identities=25% Similarity=0.235 Sum_probs=25.0
Q ss_pred EecCCCCCcEEEEEcCCCChHHHHHHHHHhh
Q 025114 50 EIEPYLSGRCIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 50 ~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
-+++ |+++.|.|++|+|||||+..++..
T Consensus 118 Gl~~---G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIES---MAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCS---SEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCC---CeEEEEECCCCCCHHHHHHHHHHH
Confidence 4566 999999999999999999999874
No 404
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.23 E-value=0.0012 Score=52.02 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSG 79 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag 79 (257)
.-.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45699999999999999998874
No 405
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.22 E-value=0.0027 Score=50.96 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 406
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.20 E-value=0.0018 Score=57.70 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
.-.++|+|++|+|||||++.|++..
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5579999999999999999998854
No 407
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.20 E-value=0.003 Score=58.31 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecc
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDC 88 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~ 88 (257)
..-+.|.||+|+|||+|.|.||+.++..|+..
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~~~~fi~v 274 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRTDATFIRV 274 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCceEeeCCCCCcHHHHHHHHHhccCCCeEEE
Confidence 45589999999999999999999999876643
No 408
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.20 E-value=0.0026 Score=51.89 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
-..++|+|+.|+|||||++.|++.+
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998865
No 409
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.19 E-value=0.0027 Score=59.42 Aligned_cols=31 Identities=13% Similarity=0.131 Sum_probs=27.9
Q ss_pred ccceEecCCCCCcEEEEEcCCCChHHHHHHHHHh
Q 025114 46 NKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSG 79 (257)
Q Consensus 46 ~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag 79 (257)
.+++++.. +.++.|.|++||||||+++.|..
T Consensus 159 pv~ldL~~---~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 159 PVVADLAK---MPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEEGGG---SCSEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEccc---CceEEEECCCCCCHHHHHHHHHH
Confidence 47788888 89999999999999999999875
No 410
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.19 E-value=0.0029 Score=49.75 Aligned_cols=22 Identities=23% Similarity=0.227 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 411
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.19 E-value=0.0029 Score=50.27 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 412
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.19 E-value=0.0028 Score=50.60 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.+.+.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 413
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.18 E-value=0.0029 Score=50.68 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.+.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 414
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.17 E-value=0.0029 Score=50.19 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.+.+.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 415
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.16 E-value=0.0024 Score=58.58 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=22.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
..+.|.||+|+|||||++.|++.+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999876
No 416
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.16 E-value=0.0032 Score=54.99 Aligned_cols=30 Identities=30% Similarity=0.357 Sum_probs=26.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhhhCCceec
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGVLGYSFFD 87 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~lg~~~~d 87 (257)
..+.|.||+|+||||+++.++..++..++.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~~~~~~ 85 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMSANIKT 85 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 468999999999999999999998876554
No 417
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.16 E-value=0.0031 Score=49.49 Aligned_cols=21 Identities=24% Similarity=0.090 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 025114 59 CIYLVGMMGSGKTTVGKILSG 79 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag 79 (257)
.++|+|+.|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999985
No 418
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.15 E-value=0.0026 Score=53.53 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
-.|+|+|+.|+|||||++.|.+.-
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 469999999999999999998754
No 419
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.15 E-value=0.0029 Score=50.32 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=20.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSG 79 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag 79 (257)
-.++|+|+.|+|||||++.+.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 3699999999999999999987
No 420
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.14 E-value=0.0033 Score=55.93 Aligned_cols=31 Identities=29% Similarity=0.440 Sum_probs=26.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceec
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFD 87 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d 87 (257)
...+.|.||+|+|||||++.++..++..++.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~ 114 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTFFS 114 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 4458999999999999999999999876553
No 421
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.14 E-value=0.0027 Score=53.95 Aligned_cols=22 Identities=32% Similarity=0.378 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|.+|||||||++.|.|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999986
No 422
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.14 E-value=0.0031 Score=50.61 Aligned_cols=22 Identities=41% Similarity=0.759 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|.+|+|||||++.+.+.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
No 423
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.13 E-value=0.0028 Score=55.18 Aligned_cols=22 Identities=36% Similarity=0.449 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
+++|+|.+|+|||||++.|.|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999974
No 424
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.0041 Score=56.89 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=27.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceecc
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFDC 88 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~ 88 (257)
..-+.|.||+|+|||+|.+.||+.++..|+..
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence 34589999999999999999999998876643
No 425
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.12 E-value=0.0031 Score=49.45 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 025114 59 CIYLVGMMGSGKTTVGKILSG 79 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag 79 (257)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999984
No 426
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.11 E-value=0.0031 Score=50.19 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 427
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.11 E-value=0.0031 Score=50.72 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
-.++|+|+.|+|||||++.+.+.
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 35899999999999999999874
No 428
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.11 E-value=0.0027 Score=57.00 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
.++|+|++|+|||||++.|.+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999853
No 429
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.11 E-value=0.0034 Score=49.83 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 430
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.11 E-value=0.0035 Score=53.96 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
+..+.|.||+|+||||+++.++..+
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 5679999999999999999999877
No 431
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.07 E-value=0.0035 Score=56.19 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSG 79 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag 79 (257)
+-.++|+|.+|+|||||++.|.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~ 24 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTK 24 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 35689999999999999999998
No 432
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.07 E-value=0.0028 Score=50.05 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.-.++|+|+.|+|||||++.+.+.
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999999863
No 433
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.07 E-value=0.0036 Score=49.85 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.+.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
No 434
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.06 E-value=0.0036 Score=49.75 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 435
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.06 E-value=0.002 Score=51.95 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999987643
No 436
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.06 E-value=0.0037 Score=48.92 Aligned_cols=23 Identities=22% Similarity=-0.008 Sum_probs=20.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
-.++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999863
No 437
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.06 E-value=0.0034 Score=50.95 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|++|+|||||++.+.+.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999998763
No 438
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.06 E-value=0.0034 Score=50.31 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 439
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.05 E-value=0.0037 Score=49.95 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
-.++|+|+.|+|||||++.+.+.
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999874
No 440
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.05 E-value=0.0037 Score=49.48 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.+.+.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 441
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.04 E-value=0.0037 Score=49.80 Aligned_cols=22 Identities=32% Similarity=0.169 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.+.+.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 442
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.04 E-value=0.0014 Score=56.96 Aligned_cols=49 Identities=16% Similarity=0.252 Sum_probs=35.3
Q ss_pred eCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCceecch
Q 025114 38 IDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCD 89 (257)
Q Consensus 38 ~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~ 89 (257)
||....++.+.-.+.. |..+.|.||.|+|||||++.++...+..+++..
T Consensus 15 ~gR~~el~~L~~~l~~---~~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~ 63 (350)
T 2qen_A 15 FDREEESRKLEESLEN---YPLTLLLGIRRVGKSSLLRAFLNERPGILIDCR 63 (350)
T ss_dssp CSCHHHHHHHHHHHHH---CSEEEEECCTTSSHHHHHHHHHHHSSEEEEEHH
T ss_pred CChHHHHHHHHHHHhc---CCeEEEECCCcCCHHHHHHHHHHHcCcEEEEee
Confidence 4444444444444455 679999999999999999999987765566544
No 443
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.03 E-value=0.0035 Score=50.43 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 444
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.03 E-value=0.0033 Score=54.79 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=21.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
-+++|+|.+|+|||||++.|.|.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 37999999999999999999874
No 445
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.02 E-value=0.0038 Score=50.10 Aligned_cols=24 Identities=25% Similarity=0.152 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.-.++|+|+.|+|||||++.+.+.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 346999999999999999999863
No 446
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.02 E-value=0.0029 Score=49.46 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999873
No 447
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.02 E-value=0.0035 Score=49.63 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSG 79 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag 79 (257)
.-.++|+|+.|+|||||++.+.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 44699999999999999999985
No 448
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.01 E-value=0.0031 Score=55.55 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
+..+.|.||+|+||||+++.++..+
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999876
No 449
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.00 E-value=0.0037 Score=53.13 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|.+|+|||||++.|.|.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999984
No 450
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.98 E-value=0.0038 Score=50.72 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.+.+.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 451
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.97 E-value=0.0021 Score=52.40 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.-.++|+|..|+|||||++.|.+.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 346999999999999999999875
No 452
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.97 E-value=0.004 Score=54.59 Aligned_cols=28 Identities=36% Similarity=0.360 Sum_probs=25.1
Q ss_pred EecCCCCCcEEEEEcCCCChHHHHHHHHHhh
Q 025114 50 EIEPYLSGRCIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 50 ~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
-+++ |+++.|.|++|+|||||+..++..
T Consensus 103 Gl~~---G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIET---RTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEET---TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCC---CcEEEEECCCCCCHhHHHHHHHHH
Confidence 4666 999999999999999999999864
No 453
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.97 E-value=0.0036 Score=50.42 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 025114 59 CIYLVGMMGSGKTTVGKILSG 79 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag 79 (257)
.++|+|+.|+|||||++.+.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 489999999999999999975
No 454
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.96 E-value=0.0043 Score=49.34 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5899999999999999888763
No 455
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.95 E-value=0.0033 Score=49.57 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
-.++|+|+.|+|||||++.+.+.
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999863
No 456
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.95 E-value=0.0042 Score=50.01 Aligned_cols=24 Identities=25% Similarity=0.159 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.-.++|+|+.|+|||||++.+.+.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999863
No 457
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.94 E-value=0.0033 Score=58.14 Aligned_cols=36 Identities=28% Similarity=0.206 Sum_probs=29.2
Q ss_pred ccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 42 QVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 42 ~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
.+++.+ +.+-+ |+.++|+|++|+|||||++.|+...
T Consensus 140 r~ID~L-~pi~k---Gq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 140 KVVDLL-APYIK---GGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHHH-SCEET---TCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred hHHHHH-hhhcc---CCEEEEECCCCCCccHHHHHHHhhh
Confidence 466666 45555 9999999999999999999998654
No 458
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.94 E-value=0.0042 Score=50.21 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
-.++|+|+.|+|||||++.+.+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999873
No 459
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.91 E-value=0.0043 Score=50.76 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
--.++|+|..|+|||||++.++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998764
No 460
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.90 E-value=0.0046 Score=50.08 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
-.++|+|+.|+|||||++.+.+.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 461
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.90 E-value=0.0057 Score=54.87 Aligned_cols=31 Identities=32% Similarity=0.550 Sum_probs=27.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceec
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFD 87 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d 87 (257)
+..+.|.||+|+|||+|++.|+..++..++.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~ 178 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFN 178 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEE
Confidence 5679999999999999999999998876553
No 462
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.90 E-value=0.0043 Score=49.80 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
.+.|.||.|+||||+++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999999865
No 463
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.89 E-value=0.0047 Score=54.46 Aligned_cols=27 Identities=33% Similarity=0.620 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCC
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGY 83 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~ 83 (257)
+..+.|.||+|+||||+++.++..++.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 568999999999999999999998863
No 464
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.88 E-value=0.0043 Score=50.31 Aligned_cols=22 Identities=27% Similarity=0.211 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.|.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
No 465
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.87 E-value=0.0033 Score=50.23 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 025114 59 CIYLVGMMGSGKTTVGKILSG 79 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag 79 (257)
.++|+|+.|+|||||++.|.+
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999975
No 466
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.87 E-value=0.0027 Score=50.45 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=20.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
-.++|+|+.|+|||||++.+.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998643
No 467
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.85 E-value=0.0045 Score=49.51 Aligned_cols=24 Identities=29% Similarity=0.191 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.-.++|+|+.|+|||||++.+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999863
No 468
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.85 E-value=0.0035 Score=49.86 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
-.|+|+|..|+|||||++.+.+.
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999998763
No 469
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.84 E-value=0.0049 Score=49.59 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 470
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.83 E-value=0.0044 Score=53.59 Aligned_cols=24 Identities=33% Similarity=0.338 Sum_probs=21.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
-.++|+|..|||||||++.|.|.-
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCC
Confidence 369999999999999999999853
No 471
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.83 E-value=0.0034 Score=53.60 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|.+|+|||||++.|.+.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999998653
No 472
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.83 E-value=0.0045 Score=49.57 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
-.++|+|..|+|||||++.+.+.
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35899999999999999988774
No 473
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.83 E-value=0.004 Score=51.26 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.-.++|+|+.|+|||||++.+.+.
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346999999999999999999763
No 474
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.80 E-value=0.0031 Score=49.55 Aligned_cols=21 Identities=38% Similarity=0.373 Sum_probs=9.3
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 025114 59 CIYLVGMMGSGKTTVGKILSG 79 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag 79 (257)
.++|+|+.|+|||||++.+.+
T Consensus 10 ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999875
No 475
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.80 E-value=0.0046 Score=50.35 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 025114 59 CIYLVGMMGSGKTTVGKILSG 79 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag 79 (257)
.++|+|+.|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999985
No 476
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.79 E-value=0.0055 Score=52.42 Aligned_cols=24 Identities=42% Similarity=0.393 Sum_probs=21.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
-.++|+|.+|||||||++.|.|..
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999853
No 477
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.79 E-value=0.0054 Score=48.76 Aligned_cols=22 Identities=23% Similarity=0.069 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 478
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.71 E-value=0.0075 Score=53.29 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
+..+.|.||+|+|||||++.++..+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999999876
No 479
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=95.71 E-value=0.0048 Score=54.08 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=38.2
Q ss_pred eeeeCccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhCCceecchhh
Q 025114 35 HAPIDEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLGYSFFDCDTL 91 (257)
Q Consensus 35 ~~~~~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d~~~~ 91 (257)
+..+.....++..-+.+. |.-+.|.|++|+||||+.-.|.. -|..++..|..
T Consensus 129 ~~~la~~~~~H~~~v~~~----g~gvli~G~sG~GKStlal~l~~-~G~~lv~DD~v 180 (312)
T 1knx_A 129 NEQFATVAQIHGVLLEVF----GVGVLLTGRSGIGKSECALDLIN-KNHLFVGDDAI 180 (312)
T ss_dssp HHHTCCCEEEEEEEEEET----TEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEEEE
T ss_pred HHHhhhcceeEEEEEEEC----CEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCCEE
Confidence 334455667888777776 78899999999999999987754 46666655543
No 480
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.70 E-value=0.0019 Score=60.35 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=34.7
Q ss_pred CccccccccceEecCCCCCcEEEEEcCCCChHHHHHHHHHhhhC
Q 025114 39 DEAQVLKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKILSGVLG 82 (257)
Q Consensus 39 ~~~~~l~~isl~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag~lg 82 (257)
|...+++.+-..+.. |..+.|.||+|+|||+|++.|+..++
T Consensus 26 Gq~~~i~~l~~al~~---~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 26 ERSHAIRLCLLAALS---GESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp SCHHHHHHHHHHHHH---TCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred HHHHHHHHHHHHHhc---CCeeEeecCchHHHHHHHHHHHHHHh
Confidence 555667777777777 88999999999999999999998774
No 481
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.69 E-value=0.0061 Score=49.11 Aligned_cols=21 Identities=33% Similarity=0.328 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 025114 59 CIYLVGMMGSGKTTVGKILSG 79 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag 79 (257)
.++|+|+.|+|||||++.+.+
T Consensus 31 ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhh
Confidence 489999999999999999976
No 482
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.68 E-value=0.0078 Score=56.22 Aligned_cols=30 Identities=37% Similarity=0.547 Sum_probs=26.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCcee
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFF 86 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~ 86 (257)
...+.|.||+|+||||+++.++..++..++
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i 106 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDIL 106 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 368999999999999999999999886654
No 483
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.68 E-value=0.0081 Score=55.20 Aligned_cols=26 Identities=38% Similarity=0.677 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhC
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLG 82 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg 82 (257)
+..+.|.||+|+||||+.+.++..++
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 56799999999999999999999997
No 484
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.68 E-value=0.0046 Score=53.46 Aligned_cols=30 Identities=30% Similarity=0.429 Sum_probs=25.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCcee
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFF 86 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~ 86 (257)
...+.|.||+|+||||+++.++..++..++
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 457899999999999999999998876543
No 485
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.66 E-value=0.006 Score=50.18 Aligned_cols=22 Identities=41% Similarity=0.759 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|.+|+|||||++.+.+.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998863
No 486
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.64 E-value=0.0064 Score=49.11 Aligned_cols=23 Identities=22% Similarity=0.055 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSG 79 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag 79 (257)
.-.++|+|+.|+|||||++.+.+
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 34699999999999999999885
No 487
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.64 E-value=0.0078 Score=55.19 Aligned_cols=30 Identities=33% Similarity=0.484 Sum_probs=25.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhh-CCcee
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVL-GYSFF 86 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~l-g~~~~ 86 (257)
...+.|.||+|+|||||++.++..+ +..++
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~~~~~~ 197 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEANNSTFF 197 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCCSSEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCCCEE
Confidence 4679999999999999999999988 55443
No 488
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.62 E-value=0.0074 Score=52.63 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
+..+.|.||+|+|||+|++.|+..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999754
No 489
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.61 E-value=0.0078 Score=59.28 Aligned_cols=31 Identities=35% Similarity=0.496 Sum_probs=26.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhhCCceec
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVLGYSFFD 87 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~lg~~~~d 87 (257)
..-+.|.||+|+|||+|.|.+|+.+|..++.
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~elg~~~~~ 268 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFFL 268 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTTTCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCeEEE
Confidence 3458999999999999999999999876653
No 490
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.60 E-value=0.0057 Score=52.33 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=21.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
-.++|+|.+|+|||||++.|.|.-
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 369999999999999999999753
No 491
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.59 E-value=0.007 Score=55.59 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
+.++.++|++|+||||++..|+..+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHH
Confidence 6799999999999999999999766
No 492
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.58 E-value=0.0073 Score=49.41 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++|+|+.|+|||||++.+.+.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 493
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.58 E-value=0.0065 Score=51.44 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
-.++|+|..|+|||||++.|.+.-
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999743
No 494
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.57 E-value=0.007 Score=53.76 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhhh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
..+++|+|++|+|||||+..|+..+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998775
No 495
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.56 E-value=0.0066 Score=51.59 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 025114 59 CIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 59 ~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
.++++|..|+|||||++.|.+.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
No 496
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.54 E-value=0.0066 Score=48.52 Aligned_cols=23 Identities=35% Similarity=0.325 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHh
Q 025114 57 GRCIYLVGMMGSGKTTVGKILSG 79 (257)
Q Consensus 57 Ge~i~LiG~nGaGKSTLlk~Lag 79 (257)
.-.++|+|+.|+|||||++.+.+
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 45699999999999999999864
No 497
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.54 E-value=0.0068 Score=51.70 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGVL 81 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~l 81 (257)
..++|+|.+|+|||||++.|.+..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred hheEEeCCCCCCHHHHHHHHhccc
Confidence 379999999999999999999754
No 498
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.53 E-value=0.0077 Score=49.11 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhh
Q 025114 58 RCIYLVGMMGSGKTTVGKILSGV 80 (257)
Q Consensus 58 e~i~LiG~nGaGKSTLlk~Lag~ 80 (257)
-.++|+|+.|+|||||++.+.+-
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45999999999999999999863
No 499
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.52 E-value=0.0075 Score=52.62 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=24.4
Q ss_pred EecCCCCCcEEEEEcCCCChHHHHHHHHHh
Q 025114 50 EIEPYLSGRCIYLVGMMGSGKTTVGKILSG 79 (257)
Q Consensus 50 ~i~~~~~Ge~i~LiG~nGaGKSTLlk~Lag 79 (257)
-+++ |+++.|.|++|+|||||+..++.
T Consensus 94 Gl~~---g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLES---QSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEET---TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccC---CeEEEEECCCCCCHHHHHHHHHH
Confidence 4677 99999999999999999998885
No 500
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.52 E-value=0.0085 Score=49.78 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCChHHH-HHHHHHhhh
Q 025114 57 GRCIYLVGMMGSGKTT-VGKILSGVL 81 (257)
Q Consensus 57 Ge~i~LiG~nGaGKST-Llk~Lag~l 81 (257)
|.+..|.|++|||||| |++.+....
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~ 53 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGI 53 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999 777775543
Done!