Query 025116
Match_columns 257
No_of_seqs 154 out of 1144
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 02:50:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025116.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025116hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2881 Predicted membrane pro 99.9 9.3E-26 2E-30 206.7 8.0 109 136-254 63-171 (294)
2 PF01169 UPF0016: Uncharacteri 99.9 1.2E-23 2.5E-28 160.5 5.7 76 142-227 1-78 (78)
3 COG2119 Predicted membrane pro 99.9 1E-21 2.2E-26 172.2 12.0 124 95-236 63-187 (190)
4 COG2119 Predicted membrane pro 99.8 3.8E-21 8.3E-26 168.6 9.0 90 140-239 2-91 (190)
5 KOG2881 Predicted membrane pro 99.7 2.3E-17 5E-22 151.8 5.5 86 139-234 206-291 (294)
6 COG4280 Predicted membrane pro 96.9 0.0037 8E-08 57.1 7.5 66 160-236 20-87 (236)
7 TIGR02840 spore_YtaF putative 96.4 0.0078 1.7E-07 53.2 6.2 49 182-240 40-88 (206)
8 PRK11469 hypothetical protein; 95.8 0.0095 2.1E-07 52.2 3.6 47 183-240 48-94 (188)
9 COG1971 Predicted membrane pro 93.4 0.078 1.7E-06 47.5 3.3 52 182-244 47-98 (190)
10 PF03596 Cad: Cadmium resistan 91.8 0.47 1E-05 42.3 6.1 53 170-233 24-76 (191)
11 COG4300 CadD Predicted permeas 91.1 2 4.3E-05 39.1 9.3 81 156-251 18-101 (205)
12 PF01810 LysE: LysE type trans 87.7 1.7 3.7E-05 36.4 6.1 72 160-239 12-86 (191)
13 TIGR00779 cad cadmium resistan 82.6 2.7 5.9E-05 37.8 5.3 55 168-233 21-75 (193)
14 PF01810 LysE: LysE type trans 78.9 7.3 0.00016 32.6 6.4 21 214-234 171-191 (191)
15 PRK10229 threonine efflux syst 76.4 13 0.00028 31.9 7.3 75 152-235 17-94 (206)
16 PF03741 TerC: Integral membra 75.8 8.3 0.00018 33.8 6.1 68 155-235 12-82 (183)
17 TIGR00948 2a75 L-lysine export 73.2 7.5 0.00016 32.6 5.0 67 161-235 11-78 (177)
18 TIGR00949 2A76 The Resistance 68.3 6.9 0.00015 32.7 3.7 66 161-234 8-76 (185)
19 TIGR03718 R_switched_Alx integ 67.8 12 0.00025 35.9 5.5 76 145-233 64-147 (302)
20 PF01914 MarC: MarC family int 67.5 23 0.0005 31.4 7.0 26 211-236 68-93 (203)
21 COG1280 RhtB Putative threonin 67.5 15 0.00032 32.3 5.7 73 154-236 20-96 (208)
22 COG1971 Predicted membrane pro 66.9 12 0.00026 33.8 5.2 43 183-236 147-189 (190)
23 TIGR03717 R_switched_YjbE inte 66.8 16 0.00036 31.8 5.9 64 155-233 14-81 (176)
24 PRK10958 leucine export protei 63.6 11 0.00023 33.0 4.1 72 154-235 24-99 (212)
25 TIGR03716 R_switched_YkoY inte 62.4 18 0.00038 32.9 5.4 73 151-236 101-176 (215)
26 PF03741 TerC: Integral membra 62.1 13 0.00028 32.6 4.4 75 141-233 104-183 (183)
27 PRK10995 inner membrane protei 61.9 16 0.00035 32.6 5.0 24 213-236 74-97 (221)
28 TIGR03716 R_switched_YkoY inte 60.8 15 0.00032 33.4 4.6 65 155-233 9-76 (215)
29 PRK10520 rhtB homoserine/homos 59.0 43 0.00093 28.7 7.0 77 149-234 15-94 (205)
30 TIGR03718 R_switched_Alx integ 56.0 36 0.00078 32.6 6.5 75 147-234 193-270 (302)
31 COG0861 TerC Membrane protein 56.0 31 0.00067 32.1 5.9 79 140-236 131-214 (254)
32 TIGR00145 FTR1 family protein. 55.5 20 0.00044 33.7 4.7 62 171-236 38-100 (283)
33 PF01914 MarC: MarC family int 55.0 39 0.00083 30.0 6.2 75 155-236 123-200 (203)
34 TIGR00997 ispZ intracellular s 53.8 33 0.00071 30.4 5.5 47 175-233 22-68 (178)
35 PRK10995 inner membrane protei 53.7 34 0.00073 30.6 5.6 28 209-236 187-214 (221)
36 PRK10019 nickel/cobalt efflux 53.3 24 0.00052 33.3 4.8 25 213-237 88-112 (279)
37 PRK11111 hypothetical protein; 51.0 36 0.00078 30.7 5.4 29 208-236 178-206 (214)
38 PRK10323 cysteine/O-acetylseri 50.4 34 0.00075 29.4 5.0 71 156-234 21-94 (195)
39 PF11139 DUF2910: Protein of u 49.7 1E+02 0.0023 26.8 7.9 59 172-234 32-90 (214)
40 PRK00259 intracellular septati 44.4 58 0.0013 28.7 5.6 46 175-232 22-67 (179)
41 PF03239 FTR1: Iron permease F 43.1 77 0.0017 29.6 6.4 65 171-239 35-103 (306)
42 COG2215 ABC-type uncharacteriz 42.8 61 0.0013 31.3 5.8 26 211-236 129-154 (303)
43 PF02659 DUF204: Domain of unk 41.5 50 0.0011 23.8 4.0 35 182-227 33-67 (67)
44 COG2917 Intracellular septatio 40.6 43 0.00092 30.3 4.1 46 176-233 23-68 (180)
45 PRK11469 hypothetical protein; 40.3 46 0.00099 29.3 4.3 42 183-235 145-186 (188)
46 PRK09304 arginine exporter pro 39.8 77 0.0017 27.5 5.6 65 162-234 26-91 (207)
47 TIGR03717 R_switched_YjbE inte 38.7 68 0.0015 28.0 5.0 76 141-232 95-174 (176)
48 PRK10621 hypothetical protein; 38.1 68 0.0015 28.8 5.2 47 180-236 210-256 (266)
49 TIGR00427 membrane protein, Ma 36.6 77 0.0017 28.2 5.2 25 210-234 176-200 (201)
50 COG4280 Predicted membrane pro 34.3 37 0.0008 31.6 2.8 67 158-235 133-200 (236)
51 COG0730 Predicted permeases [G 34.0 1.4E+02 0.003 26.5 6.3 55 171-235 68-122 (258)
52 PRK09304 arginine exporter pro 32.4 3.3E+02 0.0072 23.5 9.0 24 213-236 181-204 (207)
53 TIGR02230 ATPase_gene1 F0F1-AT 30.8 1.7E+02 0.0038 23.9 5.9 24 180-206 50-73 (100)
54 PRK15071 lipopolysaccharide AB 30.7 2.8E+02 0.006 25.7 8.0 77 138-233 271-354 (356)
55 PF06724 DUF1206: Domain of Un 30.6 1E+02 0.0023 22.6 4.3 22 215-236 3-24 (73)
56 PF12811 BaxI_1: Bax inhibitor 30.4 3.8E+02 0.0082 25.5 8.9 38 140-180 93-132 (274)
57 PF06379 RhaT: L-rhamnose-prot 29.6 93 0.002 30.6 4.8 83 140-234 71-154 (344)
58 COG2095 MarC Multiple antibiot 29.4 2E+02 0.0043 26.0 6.6 75 155-236 122-197 (203)
59 PF03239 FTR1: Iron permease F 28.8 1.4E+02 0.0031 27.9 5.8 85 137-234 131-217 (306)
60 KOG3415 Putative Rab5-interact 28.8 1E+02 0.0022 26.4 4.4 17 152-168 33-49 (129)
61 PF04279 IspA: Intracellular s 28.7 1.5E+02 0.0033 25.9 5.6 44 178-233 25-68 (176)
62 TIGR00949 2A76 The Resistance 27.9 1.8E+02 0.0039 24.2 5.8 17 213-229 168-184 (185)
63 COG0730 Predicted permeases [G 27.7 1E+02 0.0022 27.3 4.4 45 181-235 211-255 (258)
64 PF01925 TauE: Sulfite exporte 27.2 1E+02 0.0022 26.4 4.3 45 175-229 195-239 (240)
65 PF10864 DUF2663: Protein of u 27.0 99 0.0021 26.5 4.0 20 235-254 77-96 (130)
66 PRK10019 nickel/cobalt efflux 27.0 3E+02 0.0065 26.1 7.6 77 146-236 197-275 (279)
67 PF03739 YjgP_YjgQ: Predicted 26.5 1.7E+02 0.0036 26.7 5.7 76 138-232 272-353 (354)
68 PF11085 YqhR: Conserved membr 26.3 98 0.0021 27.8 4.0 69 158-233 81-151 (173)
69 PF06724 DUF1206: Domain of Un 26.3 86 0.0019 23.1 3.2 23 215-237 49-71 (73)
70 PRK11111 hypothetical protein; 26.2 95 0.0021 28.0 4.0 51 174-233 46-96 (214)
71 PF14007 YtpI: YtpI-like prote 25.6 83 0.0018 25.2 3.1 22 215-236 58-79 (89)
72 PF11364 DUF3165: Protein of u 24.7 3.2E+02 0.007 21.9 6.2 25 216-240 55-79 (81)
73 PRK00293 dipZ thiol:disulfide 24.4 1.1E+02 0.0025 31.1 4.6 48 174-231 215-262 (571)
74 PRK11195 lysophospholipid tran 24.2 3.1E+02 0.0066 25.4 7.1 25 142-166 5-29 (393)
75 PF12650 DUF3784: Domain of un 24.2 93 0.002 24.0 3.2 14 218-231 2-15 (97)
76 PRK10621 hypothetical protein; 23.6 1.9E+02 0.0041 26.0 5.4 51 173-233 74-124 (266)
77 PF05360 YiaAB: yiaA/B two hel 23.3 2.3E+02 0.005 20.3 4.8 47 177-233 3-49 (53)
78 PF02535 Zip: ZIP Zinc transpo 22.6 3.2E+02 0.0069 24.4 6.6 84 140-232 202-286 (317)
79 TIGR00427 membrane protein, Ma 22.0 2E+02 0.0044 25.5 5.3 52 173-233 42-93 (201)
80 COG0861 TerC Membrane protein 21.7 4.5E+02 0.0098 24.5 7.6 78 143-233 17-100 (254)
81 PF02683 DsbD: Cytochrome C bi 21.7 2.1E+02 0.0045 24.8 5.1 47 174-232 47-93 (211)
82 COG1280 RhtB Putative threonin 21.1 2.1E+02 0.0044 25.1 5.0 22 212-233 185-206 (208)
83 PRK03557 zinc transporter ZitB 20.8 2.6E+02 0.0056 26.0 5.9 23 214-236 188-210 (312)
84 PRK10229 threonine efflux syst 20.7 1.3E+02 0.0028 25.8 3.6 21 213-233 185-205 (206)
85 PF04306 DUF456: Protein of un 20.6 3.9E+02 0.0085 22.5 6.4 89 139-233 30-124 (140)
No 1
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=99.92 E-value=9.3e-26 Score=206.74 Aligned_cols=109 Identities=37% Similarity=0.605 Sum_probs=101.0
Q ss_pred cchhHHHHHHHHHHHHhhcCcHHHHHHHHHHhccCCceeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhH
Q 025116 136 GDISRGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPID 215 (257)
Q Consensus 136 ~~~~~aFltAFllIFLAElGDKTQLatalLAaRy~~~~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv 215 (257)
+++..+|..+|.+||++|+||||||++++|||||+|..||.|+..||++||++++++|+.. +..+|+++ .
T Consensus 63 ~s~~~~f~~SiSmI~vsEiGDKTFfiAAlmAmr~~R~~Vf~Ga~~AL~lMTiLS~~lG~aa---p~lipr~~-------T 132 (294)
T KOG2881|consen 63 SSFLQGFTASISMIFVSEIGDKTFFIAALMAMRYPRLTVFSGAMSALALMTILSVLLGWAA---PNLIPRKY-------T 132 (294)
T ss_pred HHHHHHHHHhhheeeeeeccchHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhh---hhhchHHH-------H
Confidence 5678999999999999999999999999999999999999999999999999999999864 47899998 8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHhhh
Q 025116 216 DIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKENFQEMV 254 (257)
Q Consensus 216 ~i~AaiLFL~FGv~tL~ea~~~~~~~~eeE~~e~~~e~~ 254 (257)
++++++||++||+|||+|++++.+.+.+||.+|+++|.-
T Consensus 133 ~~~~t~LF~iFGlkmL~eg~~~~~~~~~eE~eEVe~el~ 171 (294)
T KOG2881|consen 133 YYLATALFLIFGLKMLKEGWEMSPSEGQEELEEVEAELA 171 (294)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHH
Confidence 999999999999999999999888777888888877754
No 2
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=99.89 E-value=1.2e-23 Score=160.54 Aligned_cols=76 Identities=43% Similarity=0.603 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHhcc--CCceeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHH
Q 025116 142 FASAFLLIFFSELGDKTFFIAALLAARN--SAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAA 219 (257)
Q Consensus 142 FltAFllIFLAElGDKTQLatalLAaRy--~~~~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~A 219 (257)
|+++|.++|++|+|||||++|+.||+|| +|+.|++|+++|++++|+++|++|+++ .+++|+++ +++++
T Consensus 1 F~~sf~~iflaE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l---~~~ip~~~-------i~~~~ 70 (78)
T PF01169_consen 1 FLTSFLLIFLAELGDKTQLATIALAARYPRNPWPVFAGATLALALATGLAVLLGSWL---ASRIPERY-------IKWVA 70 (78)
T ss_pred CHHHHHHHHHHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCHHH-------HHHHH
Confidence 6789999999999999999999999999 789999999999999999999999965 68999998 99999
Q ss_pred HHHHHHHH
Q 025116 220 VCLLVYFG 227 (257)
Q Consensus 220 aiLFL~FG 227 (257)
+++|++||
T Consensus 71 ~~lFl~fG 78 (78)
T PF01169_consen 71 GALFLLFG 78 (78)
T ss_pred HHHHHHHC
Confidence 99999997
No 3
>COG2119 Predicted membrane protein [Function unknown]
Probab=99.87 E-value=1e-21 Score=172.19 Aligned_cols=124 Identities=24% Similarity=0.283 Sum_probs=97.2
Q ss_pred ChhhHHHHHHHHHhhhccchhhhhcccccCCCCCcCCCCCccchhHHHHHHHHHHHHhhcCcHHHHHHHHHHhccCC-ce
Q 025116 95 DSGLIKFVMFFGLLTLQGSQTAVAAVDFASGLQSFPFLGDLGDISRGFASAFLLIFFSELGDKTFFIAALLAARNSA-AT 173 (257)
Q Consensus 95 ~~~~~~~~~~~~~l~l~~~~~~~~~~d~~~~~~~~~~~g~~~~~~~aFltAFllIFLAElGDKTQLatalLAaRy~~-~~ 173 (257)
+...+++.....|+........- |....++..+ .+-+..|+++|+++|++|||||||++|++||++|+. |.
T Consensus 63 ~~~~~~~~~~~~Flafav~~l~e---dk~~~~e~~~-----~~~~~~f~~tfi~~FlaE~GDKTQiATIaLaA~~~~~~~ 134 (190)
T COG2119 63 PERPLAWASGVLFLAFAVWMLIE---DKEDDEEAQA-----ASPRGVFVTTFITFFLAELGDKTQIATIALAADYHSPWA 134 (190)
T ss_pred chhHHHHHHHHHHHHHHHHHhcc---cccccccccc-----cccccHHHHHHHHHHHHHhccHHHHHHHHHhhcCCCcee
Confidence 33445555555666655553322 2222222221 122569999999999999999999999999999885 99
Q ss_pred eehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhhc
Q 025116 174 VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAAS 236 (257)
Q Consensus 174 Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~tL~ea~~ 236 (257)
||+|+.+|++++++++|++|+++ ++++|.|. ++.++|++|++||+..+|+...
T Consensus 135 V~~Gt~lg~~l~s~laVl~G~~i---a~ki~~r~-------l~~~aallFl~fal~~~~~~~~ 187 (190)
T COG2119 135 VFAGTTLGMILASVLAVLLGKLI---AGKLPERL-------LRFIAALLFLIFALVLLWQVFE 187 (190)
T ss_pred eehhhHHHHHHHHHHHHHHHHHH---HccCCHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999964 79999998 9999999999999999998543
No 4
>COG2119 Predicted membrane protein [Function unknown]
Probab=99.84 E-value=3.8e-21 Score=168.64 Aligned_cols=90 Identities=34% Similarity=0.455 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHhccCCceeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHH
Q 025116 140 RGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAA 219 (257)
Q Consensus 140 ~aFltAFllIFLAElGDKTQLatalLAaRy~~~~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~A 219 (257)
.+++.+..+|++||+|||||+++++||+||+|++||.|..+|++.||++++++|++. +..+|+++ .++++
T Consensus 2 ~~~~~s~~~v~laEiGDKT~lia~llA~r~~~~~v~~g~~~a~~~m~~la~~vG~~~---~~~~~~~~-------~~~~~ 71 (190)
T COG2119 2 EALLVSLLMVALAEIGDKTQLIAMLLAMRYRRWPVFAGIAIALFAMHALAVLVGHAA---ASLLPERP-------LAWAS 71 (190)
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH---hccCchhH-------HHHHH
Confidence 578899999999999999999999999999999999999999999999999999864 67889998 89999
Q ss_pred HHHHHHHHHHHHHhhhcCCC
Q 025116 220 VCLLVYFGVSTLLDAASTDG 239 (257)
Q Consensus 220 aiLFL~FGv~tL~ea~~~~~ 239 (257)
+++|++||+|+++|.-.+++
T Consensus 72 ~~~Flafav~~l~edk~~~~ 91 (190)
T COG2119 72 GVLFLAFAVWMLIEDKEDDE 91 (190)
T ss_pred HHHHHHHHHHHhcccccccc
Confidence 99999999999998444443
No 5
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=99.68 E-value=2.3e-17 Score=151.79 Aligned_cols=86 Identities=27% Similarity=0.357 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHHhhcCcHHHHHHHHHHhccCCceeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHH
Q 025116 139 SRGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIA 218 (257)
Q Consensus 139 ~~aFltAFllIFLAElGDKTQLatalLAaRy~~~~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~ 218 (257)
...|+.+|.++|++|||||+|++|+.||++-+++.|++|+.+|+.+||.++|+.|+. ++++|+.|. +.++
T Consensus 206 spifikaFsltF~aEwGDRSQlaTI~laA~en~~gV~~G~~iGH~lCT~lAVigGk~---lAskIS~rt-------Vt~~ 275 (294)
T KOG2881|consen 206 SPIFIKAFSLTFLAEWGDRSQLATIALAADENPLGVAIGAIIGHALCTGLAVIGGKY---LASKISVRT-------VTLI 275 (294)
T ss_pred cHHHHHHHHHHHHHHhccHHHHHHHHHhcccCcceeeeccHHHHHHHHHHHHhhhHH---HhhhheeEE-------EEEe
Confidence 569999999999999999999999999999999999999999999999999999995 578999887 8999
Q ss_pred HHHHHHHHHHHHHHhh
Q 025116 219 AVCLLVYFGVSTLLDA 234 (257)
Q Consensus 219 AaiLFL~FGv~tL~ea 234 (257)
++++|+.||+..++++
T Consensus 276 ggi~Fi~Fgl~~i~~~ 291 (294)
T KOG2881|consen 276 GGILFIIFGLVYIFQG 291 (294)
T ss_pred cchhHHHHHHHHHhcC
Confidence 9999999999998864
No 6
>COG4280 Predicted membrane protein [Function unknown]
Probab=96.88 E-value=0.0037 Score=57.08 Aligned_cols=66 Identities=21% Similarity=0.311 Sum_probs=55.0
Q ss_pred HHHHHHHhc--cCCceeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhhc
Q 025116 160 FIAALLAAR--NSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAAS 236 (257)
Q Consensus 160 LatalLAaR--y~~~~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~tL~ea~~ 236 (257)
..++.++.- +++..-+.|+.+|+++.-.++..+|..+ ..+|..+ .++++|++.+.||..-++.+.+
T Consensus 20 a~aIa~avg~~~~wr~al~ga~lglalvl~l~lvlGk~L----~lvPln~-------lqiv~gvLLllFG~rw~Rsavr 87 (236)
T COG4280 20 AGAIAAAVGNIYKWRLALIGAVLGLALVLILTLVLGKLL----YLVPLNY-------LQIVSGVLLLLFGYRWIRSAVR 87 (236)
T ss_pred HHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHccce----eeeechH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443 5567889999999999999999999987 4789988 9999999999999998888754
No 7
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=96.42 E-value=0.0078 Score=53.23 Aligned_cols=49 Identities=20% Similarity=0.381 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 025116 182 LAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGL 240 (257)
Q Consensus 182 L~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~tL~ea~~~~~~ 240 (257)
..+|+.++.++|+.+ .+++|.++ .+++++++++++|++|++++++.+++
T Consensus 40 ~~~~~~lg~~~G~~~---~~~i~~~~-------~~~ig~~iLi~iG~~mi~~~~~~~~~ 88 (206)
T TIGR02840 40 SGLFIFISMLLGKFL---AKFLPPKV-------TEILGAFILIAIGIWIIYNAFRPKKE 88 (206)
T ss_pred HHHHHHHHHHHHHHH---HHHhchhh-------HHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 458899999999865 57888776 89999999999999999999875543
No 8
>PRK11469 hypothetical protein; Provisional
Probab=95.76 E-value=0.0095 Score=52.22 Aligned_cols=47 Identities=13% Similarity=0.196 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 025116 183 AAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGL 240 (257)
Q Consensus 183 ~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~tL~ea~~~~~~ 240 (257)
.+|+.++-.+|+.+ .+++|. + .+|+++++.++.|+||++|+++.+++
T Consensus 48 ~~m~~~g~~~G~~l---~~~i~~-~-------~~~i~~~lL~~lG~~mi~e~~~~~~~ 94 (188)
T PRK11469 48 TLTPLIGWGMGMLA---SRFVLE-W-------NHWIAFVLLIFLGGRMIIEGFRGADD 94 (188)
T ss_pred HHHHHHHHHHHHHH---HHHHHH-H-------HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 57788888888866 456665 4 79999999999999999999875544
No 9
>COG1971 Predicted membrane protein [Function unknown]
Probab=93.35 E-value=0.078 Score=47.54 Aligned_cols=52 Identities=15% Similarity=0.331 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCchH
Q 025116 182 LAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSED 244 (257)
Q Consensus 182 L~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~tL~ea~~~~~~~~ee 244 (257)
.++|.+++-+.|..+ ++++ ..+ .+|++++++++.|+||++++.+.++++.++
T Consensus 47 ~~i~pliG~~~g~~~---s~~i-~~~-------~~wigf~lL~~lG~~mI~e~f~~~~~~~~~ 98 (190)
T COG1971 47 QAIMPLIGWFIGKFL---STFI-AEW-------AHWIGFVLLIILGLKMIIEGFKNEEDEFVD 98 (190)
T ss_pred HHHHHHHHHHHHHHH---HHHH-HHH-------HHHHHHHHHHHHHHHHHHHHhchhhcchhc
Confidence 345666777777655 2233 233 799999999999999999999986655443
No 10
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=91.80 E-value=0.47 Score=42.30 Aligned_cols=53 Identities=11% Similarity=0.219 Sum_probs=41.7
Q ss_pred CCceeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHHHHHh
Q 025116 170 SAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 233 (257)
Q Consensus 170 ~~~~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~tL~e 233 (257)
+++.|++|-.+|..+.-++|.+++..+ ..+|..+ +--.-|++=+++|++.++.
T Consensus 24 ~~~~I~~GqylG~~~Lv~~Sl~~~~~l----~~ip~~w-------iLGlLGliPI~lGi~~l~~ 76 (191)
T PF03596_consen 24 RRRQIVIGQYLGFTILVLASLLGAFGL----LFIPPEW-------ILGLLGLIPIYLGIKALFS 76 (191)
T ss_pred ChhhhhhhHHHHHHHHHHHHHHHHHHH----HhCCHHH-------HHHHHHHHHHHHHHHHHHc
Confidence 368999999999998888888887654 4788776 4345677779999998875
No 11
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=91.06 E-value=2 Score=39.11 Aligned_cols=81 Identities=17% Similarity=0.334 Sum_probs=49.1
Q ss_pred cHHHHHHHHHHhc---cCCceeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHHHHH
Q 025116 156 DKTFFIAALLAAR---NSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLL 232 (257)
Q Consensus 156 DKTQLatalLAaR---y~~~~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~tL~ 232 (257)
|--=+..+..|.+ .+.+.+++|=.+|.+..-+.+.++. ++.+.+|+++ +--.-|++=++.|+|.++
T Consensus 18 D~lIiL~l~Far~~~~k~~~~I~~GQyLGs~~lilaSL~~a----~v~~fvp~e~-------I~glLGLIPi~LGik~l~ 86 (205)
T COG4300 18 DLLIILLLFFARRKSRKDILHIYLGQYLGSVILILASLLFA----FVLNFVPEEW-------ILGLLGLIPIYLGIKVLI 86 (205)
T ss_pred HHHHHHHHHHHHhcccCcEEEEeHHHHHhHHHHHHHHHHHH----HHHhhCcHHH-------HHHHHhHHHHHHhhHHhh
Confidence 4444444555544 3457899998877665544444433 2346789887 554567777999999888
Q ss_pred hhhcCCCCCchHHHHHHHH
Q 025116 233 DAASTDGLKSEDEQKENFQ 251 (257)
Q Consensus 233 ea~~~~~~~~eeE~~e~~~ 251 (257)
.+.. |+|+|.+|..+
T Consensus 87 ~~d~----d~e~~~~e~L~ 101 (205)
T COG4300 87 LGDD----DGEEEAKEELA 101 (205)
T ss_pred cccC----cCchhhhHHHH
Confidence 7333 44444444444
No 12
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=87.74 E-value=1.7 Score=36.36 Aligned_cols=72 Identities=15% Similarity=0.121 Sum_probs=50.4
Q ss_pred HHHHHHHhccCC---ceeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhhc
Q 025116 160 FIAALLAARNSA---ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAAS 236 (257)
Q Consensus 160 LatalLAaRy~~---~~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~tL~ea~~ 236 (257)
+..+..++++++ ..+.+|..++-++...++++....+ .+..|.- ..++++++++.++++|+.+++...+
T Consensus 12 ~~~i~~~~~~G~~~~~~~~~G~~~~~~i~~~~~~~g~~~l---~~~~~~~-----~~~l~~~G~~~L~~lg~~~~~~~~~ 83 (191)
T PF01810_consen 12 LLVISNGLRKGFKAGLPVALGAALGDLIYILLAVFGLSAL---LKSSPWL-----FMILKLLGALYLLYLGYKLLRSKFS 83 (191)
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhChHH-----HHHHHHHHHHHHHHHHHHHHhcccC
Confidence 455666777764 4678888888888877777665543 2333322 2458999999999999999987655
Q ss_pred CCC
Q 025116 237 TDG 239 (257)
Q Consensus 237 ~~~ 239 (257)
.+.
T Consensus 84 ~~~ 86 (191)
T PF01810_consen 84 SKS 86 (191)
T ss_pred cch
Confidence 444
No 13
>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein. These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).
Probab=82.64 E-value=2.7 Score=37.78 Aligned_cols=55 Identities=13% Similarity=0.317 Sum_probs=40.4
Q ss_pred ccCCceeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHHHHHh
Q 025116 168 RNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 233 (257)
Q Consensus 168 Ry~~~~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~tL~e 233 (257)
+++++.|.+|-.+|..+.-++|++.+..+ ..+|+.| +--.-|++=+++|+|.+++
T Consensus 21 ~~~~~~IviGqylGf~~Lv~~Sl~~a~gl----~~iP~~w-------IlGlLGliPI~lGi~~l~~ 75 (193)
T TIGR00779 21 RKEYKDIYIGQYLGSIILILVSLLLAFGV----NLIPEKW-------VLGLLGLIPIYLGIKVAIK 75 (193)
T ss_pred CCCeeEEEEeHHHHHHHHHHHHHHHHHHH----HhCCHHH-------HHhHHhHHHHHHHHHHHhc
Confidence 56788999999999887777777755432 4788876 4334555559999998886
No 14
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=78.95 E-value=7.3 Score=32.57 Aligned_cols=21 Identities=24% Similarity=0.153 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q 025116 214 IDDIAAVCLLVYFGVSTLLDA 234 (257)
Q Consensus 214 iv~i~AaiLFL~FGv~tL~ea 234 (257)
+++.+++++|++||+++++++
T Consensus 171 ~i~~~~g~~li~~av~l~~~g 191 (191)
T PF01810_consen 171 WINRISGLLLIGFAVYLLYSG 191 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 489999999999999999863
No 15
>PRK10229 threonine efflux system; Provisional
Probab=76.43 E-value=13 Score=31.87 Aligned_cols=75 Identities=16% Similarity=0.138 Sum_probs=49.5
Q ss_pred hhcCcHHHHHHHHHHhccCC---ceeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHH
Q 025116 152 SELGDKTFFIAALLAARNSA---ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGV 228 (257)
Q Consensus 152 AElGDKTQLatalLAaRy~~---~~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv 228 (257)
.--|. ..+.++.-+.++++ ....+|...|.++..+++++.-..+ -...|.-. .++++++++..+++|+
T Consensus 17 ~sPGP-~~~~vi~~~~~~G~~~~~~~~~G~~~g~~i~~~l~~~Gl~~l---l~~~p~~~-----~~l~~~Ga~yLlylg~ 87 (206)
T PRK10229 17 MSPGP-DFFFVSQTAVSRSRKEAMMGVLGITCGVMVWAGVALLGLHLI---LEKMAWLH-----TIIMVGGGLYLCWMGY 87 (206)
T ss_pred cCCCc-hhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHH-----HHHHHHHHHHHHHHHH
Confidence 33465 66777777888774 3567788888887766655544332 22334322 3578888888899999
Q ss_pred HHHHhhh
Q 025116 229 STLLDAA 235 (257)
Q Consensus 229 ~tL~ea~ 235 (257)
.+++++.
T Consensus 88 ~~~~~~~ 94 (206)
T PRK10229 88 QMLRGAL 94 (206)
T ss_pred HHHHhcc
Confidence 9998653
No 16
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=75.84 E-value=8.3 Score=33.78 Aligned_cols=68 Identities=19% Similarity=0.332 Sum_probs=45.8
Q ss_pred CcHHHHHHHHHHh---ccCCceeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHHHH
Q 025116 155 GDKTFFIAALLAA---RNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTL 231 (257)
Q Consensus 155 GDKTQLatalLAa---Ry~~~~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~tL 231 (257)
+|.-.+++++..- ++++...+.|...|+++-.++-..+...++ .. |++++++|+..++-|+.++
T Consensus 12 ~DN~~vi~~~~~~lp~~~r~kal~~Gi~~A~~lR~~~i~~~~~ll~----~~---------~~i~~igG~~Ll~~a~k~~ 78 (183)
T PF03741_consen 12 IDNAFVIAMIFRKLPPEQRRKALFWGIIGAIVLRIIFIFLASWLLS----IF---------PWILLIGGLFLLYIAIKLL 78 (183)
T ss_pred hhHHHHHHHHHhCCCHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHH----HH---------HHHHHHHHHHHHHHHHHHH
Confidence 5665555444332 244678999999999777766666554432 21 2478888888888888888
Q ss_pred Hhhh
Q 025116 232 LDAA 235 (257)
Q Consensus 232 ~ea~ 235 (257)
++..
T Consensus 79 ~~~~ 82 (183)
T PF03741_consen 79 HEER 82 (183)
T ss_pred Hhcc
Confidence 8754
No 17
>TIGR00948 2a75 L-lysine exporter.
Probab=73.24 E-value=7.5 Score=32.61 Aligned_cols=67 Identities=10% Similarity=0.030 Sum_probs=43.7
Q ss_pred HHHHHHhccCC-ceeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 025116 161 IAALLAARNSA-ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA 235 (257)
Q Consensus 161 atalLAaRy~~-~~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~tL~ea~ 235 (257)
.++..++++++ ..+.+|..+|.++...++++.-..+ -+..|.-. .++++++++-.+++|+.+++...
T Consensus 11 ~vi~~~~~~~~g~~~~~G~~~g~~i~~~~~~~Gl~~l---l~~~p~~~-----~~l~~~Ga~YLlylg~~~~r~~~ 78 (177)
T TIGR00948 11 FVLRQGIRREHVLLIVALCCICDLVLIAAGVFGVAAL---LAASPILL-----AVLTWGGALFLLWYGFLAAKTAW 78 (177)
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCHHHH-----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555543 4677888888888777666655433 23334332 34788888888999999998754
No 18
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=68.25 E-value=6.9 Score=32.72 Aligned_cols=66 Identities=12% Similarity=0.072 Sum_probs=43.2
Q ss_pred HHHHHHhccCC---ceeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHHHHHhh
Q 025116 161 IAALLAARNSA---ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA 234 (257)
Q Consensus 161 atalLAaRy~~---~~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~tL~ea 234 (257)
.++.-++++++ +.+.+|..+|.++...++++.-..+ -+..|.- +.++++++++..+++|+.++++.
T Consensus 8 ~~~~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~Gl~~l---~~~~~~~-----~~~l~~~Ga~yLl~lg~~~~~~~ 76 (185)
T TIGR00949 8 VVMQTSLSSGRRAGVLTILGIALGDAIWIVLSLLGLAVL---ISKSVIL-----FTVIKWLGGAYLIYLGIKMLRKK 76 (185)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHH-----HHHHHHHHHHHHHHHHHHHHHcc
Confidence 44455555553 4678888888888877776633322 2334432 13588899988899999988753
No 19
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=67.82 E-value=12 Score=35.91 Aligned_cols=76 Identities=22% Similarity=0.306 Sum_probs=48.5
Q ss_pred HHHHHHHhhc---CcHHHHHHHHHHhc-----cCCceeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHH
Q 025116 145 AFLLIFFSEL---GDKTFFIAALLAAR-----NSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDD 216 (257)
Q Consensus 145 AFllIFLAEl---GDKTQLatalLAaR-----y~~~~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~ 216 (257)
.|....+-|. +|+-+..++..+.+ +++...+.|...|+++-.++- .+|.++ -+.+ +++.
T Consensus 64 ~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~Gi~gAlvlR~i~i-~~g~~L---i~~f---------~wi~ 130 (302)
T TIGR03718 64 EFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGILGALVLRAIFI-ALGAAL---IEQF---------HWVL 130 (302)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHh---------HHHH
Confidence 3444445553 79999888888763 335788999988887665554 445433 1222 2366
Q ss_pred HHHHHHHHHHHHHHHHh
Q 025116 217 IAAVCLLVYFGVSTLLD 233 (257)
Q Consensus 217 i~AaiLFL~FGv~tL~e 233 (257)
++.|+..++-|+.++++
T Consensus 131 ~ifG~fLi~~a~k~~~~ 147 (302)
T TIGR03718 131 YIFGAFLLYTGIKMLFE 147 (302)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 77777777777777764
No 20
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=67.52 E-value=23 Score=31.39 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=20.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhc
Q 025116 211 DLPIDDIAAVCLLVYFGVSTLLDAAS 236 (257)
Q Consensus 211 ~~~iv~i~AaiLFL~FGv~tL~ea~~ 236 (257)
+++-.++++|++++..|+.|+....+
T Consensus 68 sl~af~IaGGiiL~~ia~~ml~~~~~ 93 (203)
T PF01914_consen 68 SLPAFRIAGGIILFLIALEMLFGSPS 93 (203)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 34458999999999999999986443
No 21
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=67.46 E-value=15 Score=32.31 Aligned_cols=73 Identities=12% Similarity=0.144 Sum_probs=47.5
Q ss_pred cCcHHHHHHHHHHhccCC---ceeehHHHHHHHHHHHHHHHH-hchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHH
Q 025116 154 LGDKTFFIAALLAARNSA---ATVFAGTFGALAAMTVISVIL-GRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVS 229 (257)
Q Consensus 154 lGDKTQLatalLAaRy~~---~~Vf~Ga~lAL~l~TvLaVll-G~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~ 229 (257)
-|.- .+.++.-++++++ +.+-+|..+|.++...++++. +..++ ..|.-+ .++++++++-.+++|+.
T Consensus 20 PGP~-~~~v~~~~~~~G~~~g~~~~~G~~~G~~v~~~l~~~Gl~all~----~~~~~f-----~~lk~~GaaYL~ylg~~ 89 (208)
T COG1280 20 PGPD-NLLVLARSLSRGRRAGLATALGIALGDLVHMLLAALGLAALLA----TSPALF-----TVLKLAGAAYLLYLGWK 89 (208)
T ss_pred CCcc-HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHH-----HHHHHHHHHHHHHHHHH
Confidence 4543 3445556666654 467888888887777666653 33332 223222 35899999999999999
Q ss_pred HHHhhhc
Q 025116 230 TLLDAAS 236 (257)
Q Consensus 230 tL~ea~~ 236 (257)
+++....
T Consensus 90 ~~ra~~~ 96 (208)
T COG1280 90 ALRAGGA 96 (208)
T ss_pred HHhcccc
Confidence 9987633
No 22
>COG1971 Predicted membrane protein [Function unknown]
Probab=66.93 E-value=12 Score=33.77 Aligned_cols=43 Identities=26% Similarity=0.420 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhhc
Q 025116 183 AAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAAS 236 (257)
Q Consensus 183 ~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~tL~ea~~ 236 (257)
++++.++..+|+.+ .++++.+ ..+++|++++.||++.+++++.
T Consensus 147 ~il~~~G~~IG~~~---g~~~g~~--------ae~lgGiiLI~~G~~iL~~~~~ 189 (190)
T COG1971 147 LILSALGAIIGRKL---GKFLGKY--------AEILGGIILIGIGVKILLEHLS 189 (190)
T ss_pred HHHHHHHHHHHHHH---HHHHhhH--------HHHHHHHHHHHHHHHHHHHhcc
Confidence 34556666666644 4556544 6899999999999999998753
No 23
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=66.81 E-value=16 Score=31.82 Aligned_cols=64 Identities=25% Similarity=0.395 Sum_probs=46.6
Q ss_pred CcHHHHHHHHHHhccC----CceeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHHH
Q 025116 155 GDKTFFIAALLAARNS----AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVST 230 (257)
Q Consensus 155 GDKTQLatalLAaRy~----~~~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~t 230 (257)
+|.-.++++ .+.+.+ +...+.|...|+++..+........+ + + |..++++|++.++.|+.|
T Consensus 14 ~DN~~vi~~-~t~~lp~~~r~~~~~~G~~~A~vlr~if~~~G~~ll----~-~---------~~~~iaGGllLl~ia~~m 78 (176)
T TIGR03717 14 GDNAVVIAL-AARNLPAHQRKKAIFWGTAGAIVLRILLTAVAVYLL----A-I---------PFLKLIGGLLLLWIGWKL 78 (176)
T ss_pred HHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-h---------HHHHHHHHHHHHHHHHHH
Confidence 788777776 233333 36889999999988877776655443 2 2 347899999999999999
Q ss_pred HHh
Q 025116 231 LLD 233 (257)
Q Consensus 231 L~e 233 (257)
+.+
T Consensus 79 l~~ 81 (176)
T TIGR03717 79 LLE 81 (176)
T ss_pred Hhc
Confidence 875
No 24
>PRK10958 leucine export protein LeuE; Provisional
Probab=63.62 E-value=11 Score=33.03 Aligned_cols=72 Identities=21% Similarity=0.305 Sum_probs=45.1
Q ss_pred cCcHHHHHHHHHHhccCC---ceeehHHHHHHHHHHHHHHH-HhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHH
Q 025116 154 LGDKTFFIAALLAARNSA---ATVFAGTFGALAAMTVISVI-LGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVS 229 (257)
Q Consensus 154 lGDKTQLatalLAaRy~~---~~Vf~Ga~lAL~l~TvLaVl-lG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~ 229 (257)
-|.-. +..+.-+.++++ ..+.+|..+|..+...++++ +|..+ +..|.-. .++++++++..+++|+.
T Consensus 24 PGP~~-~~v~~~~~~~G~r~~~~~~~G~~~g~~~~~~~~~~G~~~l~----~~~p~~~-----~~l~~~G~~yL~~la~~ 93 (212)
T PRK10958 24 PGPNS-LYVLSTAARRGVKAGYRAACGVFIGDAVLMFLAAAGVASLL----KATPLLF-----NVVKYLGAAYLLYLGVK 93 (212)
T ss_pred CchHH-HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHH-----HHHHHHHHHHHHHHHHH
Confidence 34433 334455556553 45677888887777666654 33333 2333322 35788898888999999
Q ss_pred HHHhhh
Q 025116 230 TLLDAA 235 (257)
Q Consensus 230 tL~ea~ 235 (257)
+++++.
T Consensus 94 ~~~~~~ 99 (212)
T PRK10958 94 MLRAAL 99 (212)
T ss_pred HHHhhc
Confidence 998764
No 25
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=62.41 E-value=18 Score=32.94 Aligned_cols=73 Identities=29% Similarity=0.321 Sum_probs=53.8
Q ss_pred HhhcCcHHHH---HHHHHHhccCCceeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHH
Q 025116 151 FSELGDKTFF---IAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFG 227 (257)
Q Consensus 151 LAElGDKTQL---atalLAaRy~~~~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FG 227 (257)
.-|+=|=.+= +.+..|...+++.++.|...+...+-..+-++.+++ ++. |.++++++++..+.|
T Consensus 101 ~I~~~DlvFSlDSV~A~~git~~~~ii~~g~~~sIl~lr~~s~~l~~li----~r~---------p~L~~~~~~iL~~ig 167 (215)
T TIGR03716 101 KVELMDIAFSVDSILAAVALSGQFWVVFLGGIIGILIMRFAATIFVKLL----ERF---------PELETAAFLLIGWIG 167 (215)
T ss_pred HHHHHHHHHHhhhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHH----HHH---------HHHHHHHHHHHHHHH
Confidence 3455565552 223333446788999999999999999999888765 233 458899999999999
Q ss_pred HHHHHhhhc
Q 025116 228 VSTLLDAAS 236 (257)
Q Consensus 228 v~tL~ea~~ 236 (257)
+.++.+++.
T Consensus 168 ~kLil~~~~ 176 (215)
T TIGR03716 168 VKLLLETLA 176 (215)
T ss_pred HHHHHHHHh
Confidence 999998644
No 26
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=62.14 E-value=13 Score=32.60 Aligned_cols=75 Identities=24% Similarity=0.378 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhhcCcHHH-----HHHHHHHhccCCceeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhH
Q 025116 141 GFASAFLLIFFSELGDKTF-----FIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPID 215 (257)
Q Consensus 141 aFltAFllIFLAElGDKTQ-----LatalLAaRy~~~~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv 215 (257)
.++.+...| |+=|=.+ ++++.++ .+.+.++.|.+.|...|-..+-.+.+.++ +. |.+
T Consensus 104 ~~~~~v~~I---~~~DlvfSlDSV~a~~~it--~~~~iv~~g~i~si~~m~~~~~~~~~~l~----~~---------p~l 165 (183)
T PF03741_consen 104 SLWLAVIQI---ELADLVFSLDSVLAAVGIT--DDFFIVITGNIISILLMRFLSFLLAKLLE----RF---------PYL 165 (183)
T ss_pred HHHHHHHHH---HHHHHHHHHhHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH---------HHH
Confidence 445444444 4456554 3444444 66889999999999999999999998763 33 458
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 025116 216 DIAAVCLLVYFGVSTLLD 233 (257)
Q Consensus 216 ~i~AaiLFL~FGv~tL~e 233 (257)
+++++++....|+.++.+
T Consensus 166 ~~~~~~~L~~ig~~li~~ 183 (183)
T PF03741_consen 166 KYLAAAILGFIGVKLILE 183 (183)
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 899999999999998763
No 27
>PRK10995 inner membrane protein; Provisional
Probab=61.89 E-value=16 Score=32.56 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhc
Q 025116 213 PIDDIAAVCLLVYFGVSTLLDAAS 236 (257)
Q Consensus 213 ~iv~i~AaiLFL~FGv~tL~ea~~ 236 (257)
+..++++|++.+.+|+.|++....
T Consensus 74 ~a~rIaGGilL~~igi~ml~~~~~ 97 (221)
T PRK10995 74 PGLRIAGGLIVAFIGFRMLFPQQK 97 (221)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 448999999999999999976433
No 28
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=60.80 E-value=15 Score=33.44 Aligned_cols=65 Identities=12% Similarity=0.233 Sum_probs=42.6
Q ss_pred CcHHHHHHHHHH---hccCCceeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHHHH
Q 025116 155 GDKTFFIAALLA---ARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTL 231 (257)
Q Consensus 155 GDKTQLatalLA---aRy~~~~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~tL 231 (257)
+|.-.+++++-. .++++...+.|...|+++--++-.+....++ +| .+++++|++.++-|+.++
T Consensus 9 ~DN~~via~~~~~LP~~~r~~al~~Gi~gAivlR~i~i~~~~~Ll~-----~~---------~l~~iGG~~Ll~~~~k~l 74 (215)
T TIGR03716 9 ADNALVLAVMVKHLPEKQRKKALFYGLIGAYVFRFIALFLASFLIK-----FW---------WIKAIGALYLLYLAIKHF 74 (215)
T ss_pred hhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH---------HHHHHHHHHHHHHHHHHH
Confidence 455555544432 2234578999999999887777666554331 22 267888888888888888
Q ss_pred Hh
Q 025116 232 LD 233 (257)
Q Consensus 232 ~e 233 (257)
++
T Consensus 75 ~~ 76 (215)
T TIGR03716 75 RK 76 (215)
T ss_pred Hh
Confidence 75
No 29
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=59.00 E-value=43 Score=28.71 Aligned_cols=77 Identities=16% Similarity=0.108 Sum_probs=49.2
Q ss_pred HHHhhcCcHHHHHHHHHHhccCC---ceeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHH
Q 025116 149 IFFSELGDKTFFIAALLAARNSA---ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVY 225 (257)
Q Consensus 149 IFLAElGDKTQLatalLAaRy~~---~~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~ 225 (257)
+...--|. ..+.++.-++++++ +...+|...|.++...++++.-..+ -...|.-. .++++++++-.++
T Consensus 15 ~~~~sPGP-~~~~v~~~~~~~G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l---~~~~p~~~-----~~lk~~Ga~YL~~ 85 (205)
T PRK10520 15 ILSLSPGS-GAINTMSTSISHGYRGAVASIAGLQTGLAIHIVLVGVGLGAL---FSQSLLAF-----EVLKWAGAAYLIW 85 (205)
T ss_pred HHhcCCch-hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHH-----HHHHHHHHHHHHH
Confidence 33333444 44555666666653 4677788888888877665544332 12334332 3588999998899
Q ss_pred HHHHHHHhh
Q 025116 226 FGVSTLLDA 234 (257)
Q Consensus 226 FGv~tL~ea 234 (257)
+|+.+++..
T Consensus 86 lg~~~~~s~ 94 (205)
T PRK10520 86 LGIQQWRAA 94 (205)
T ss_pred HHHHHHhCC
Confidence 999999864
No 30
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=56.04 E-value=36 Score=32.63 Aligned_cols=75 Identities=25% Similarity=0.375 Sum_probs=54.9
Q ss_pred HHHHHhhcCcHHHH---HHHHHHhccCCceeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHH
Q 025116 147 LLIFFSELGDKTFF---IAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLL 223 (257)
Q Consensus 147 llIFLAElGDKTQL---atalLAaRy~~~~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLF 223 (257)
..+..-|+=|=.|= +.+..|...+++.|+.|.+.|++..-.+--++.+.+ ++. |.++++++++.
T Consensus 193 ~vli~Ie~~DlvFslDSIpAi~aiT~d~~iV~tsnifaIlgLR~lyf~l~~ll----~rf---------~~L~~~~a~iL 259 (302)
T TIGR03718 193 LVLVLVETTDLIFAVDSIPAIFAITQDPFIVFTSNIFAILGLRSLYFLLAGLL----ERF---------HYLKYGLAVIL 259 (302)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHhhcCCeEEehHHHHHHHHHHHHHHHHHHHH----HHh---------HHHHHHHHHHH
Confidence 44455566676653 345566667899999999988887766666666654 233 45889999999
Q ss_pred HHHHHHHHHhh
Q 025116 224 VYFGVSTLLDA 234 (257)
Q Consensus 224 L~FGv~tL~ea 234 (257)
.+.|+.|+.++
T Consensus 260 ~fIGvkmll~~ 270 (302)
T TIGR03718 260 VFIGVKMLLHA 270 (302)
T ss_pred HHHHHHHHHhh
Confidence 99999999874
No 31
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=55.99 E-value=31 Score=32.13 Aligned_cols=79 Identities=22% Similarity=0.324 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhhcCcHHH-----HHHHHHHhccCCceeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchh
Q 025116 140 RGFASAFLLIFFSELGDKTF-----FIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPI 214 (257)
Q Consensus 140 ~aFltAFllIFLAElGDKTQ-----LatalLAaRy~~~~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~i 214 (257)
..|+.+...|-++ |=.| ++++.++ ..++.|+.|.+.|..+|=..+-.+.++++ +.| +
T Consensus 131 ~~f~~ai~~I~i~---D~vFSlDSV~Aa~g~~--~~~~im~~a~i~aI~~m~~aa~~l~~ll~----r~p---------~ 192 (254)
T COG0861 131 TPFWGAIIQIELA---DLVFSLDSVIAAVGMA--GHPFVMVTAVIFAILVMRFAAFLLARLLE----RHP---------T 192 (254)
T ss_pred CcHHHHHHHHHHH---HHHHhhhHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHH----Hch---------H
Confidence 4566665555443 4333 4444444 56889999999999999999999998763 343 4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 025116 215 DDIAAVCLLVYFGVSTLLDAAS 236 (257)
Q Consensus 215 v~i~AaiLFL~FGv~tL~ea~~ 236 (257)
+.++++++.++.|+.++.++..
T Consensus 193 l~~~~~~iL~~IG~kli~~~~~ 214 (254)
T COG0861 193 LKYLALVILLFIGVKLILEGLA 214 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 7889999999999999998744
No 32
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=55.49 E-value=20 Score=33.67 Aligned_cols=62 Identities=21% Similarity=0.176 Sum_probs=39.3
Q ss_pred CceeehHHHHHHHHHHHHHHHHhchhhhhcccCCccc-cCCCchhHHHHHHHHHHHHHHHHHHhhhc
Q 025116 171 AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRF-GQTDLPIDDIAAVCLLVYFGVSTLLDAAS 236 (257)
Q Consensus 171 ~~~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~-~~~~~~iv~i~AaiLFL~FGv~tL~ea~~ 236 (257)
+..|+.|+.+|+++.-++++++...+. .++... .+-=-=++-++++++....++||...+.+
T Consensus 38 ~~~V~~G~~~gl~~s~~~a~~~~~~~~----~~~~~~~~el~eg~~~lvAv~~l~~m~~Wm~~~~~~ 100 (283)
T TIGR00145 38 RGWVWVGVLAGFAACLAIGIGVIGAYG----SLQKDEFKELLEGIFGVIAVVMLSYMGLWMLRMQRK 100 (283)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh----hcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999988877777655431 222110 00000125678888889999999965433
No 33
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=55.00 E-value=39 Score=29.97 Aligned_cols=75 Identities=17% Similarity=0.174 Sum_probs=46.3
Q ss_pred CcHHHHHHHHHHhccCCc---eeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHHHH
Q 025116 155 GDKTFFIAALLAARNSAA---TVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTL 231 (257)
Q Consensus 155 GDKTQLatalLAaRy~~~---~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~tL 231 (257)
|.-|-=+++.++++++.+ .+.+++.+...+.+.+.-..++ ++-.+.|++.+.++..+.|++....|+.++
T Consensus 123 GPG~It~vi~~~~~~~~~~~~~~~~~ai~~~~~~~~l~l~~a~-------~i~~~lG~~g~~vi~Ri~Glil~aiavq~i 195 (203)
T PF01914_consen 123 GPGTITTVIVLSAEAGSLQSLLIVLIAILLVALITYLILRFAD-------KIMRRLGKTGLQVITRIMGLILAAIAVQMI 195 (203)
T ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666667777777653 3333333333333444433333 233333555677789999999999999999
Q ss_pred Hhhhc
Q 025116 232 LDAAS 236 (257)
Q Consensus 232 ~ea~~ 236 (257)
.++.+
T Consensus 196 ~~Gl~ 200 (203)
T PF01914_consen 196 LSGLR 200 (203)
T ss_pred HHHHH
Confidence 98764
No 34
>TIGR00997 ispZ intracellular septation protein A. This partially characterized protein, whose absence can cause a cell division defect in an intracellularly replicating bacterium, is found only so far only in the Proteobacteria.
Probab=53.76 E-value=33 Score=30.43 Aligned_cols=47 Identities=23% Similarity=0.138 Sum_probs=34.1
Q ss_pred ehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHHHHHh
Q 025116 175 FAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 233 (257)
Q Consensus 175 f~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~tL~e 233 (257)
..-++.++++.+++.+...... .+++|. ++++++++-++||..|++=
T Consensus 22 I~~AT~~~~vat~~~~~~~~~~---~~~v~~---------m~~is~~lv~vFGglTl~~ 68 (178)
T TIGR00997 22 IFAATIALLVATIIAIGLSYVK---YKKVEK---------MQWISFVLIVVFGGLTLIF 68 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hCCccH---------HHHHHHHHHHHHHHHHHHh
Confidence 3445667777888888877654 355543 6789999999999888874
No 35
>PRK10995 inner membrane protein; Provisional
Probab=53.72 E-value=34 Score=30.55 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=23.2
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhhc
Q 025116 209 QTDLPIDDIAAVCLLVYFGVSTLLDAAS 236 (257)
Q Consensus 209 ~~~~~iv~i~AaiLFL~FGv~tL~ea~~ 236 (257)
.+.+.++..+.|++...+|+.+++++.+
T Consensus 187 ~~gl~ii~Ri~GliL~aiavq~i~~Gi~ 214 (221)
T PRK10995 187 KGGIEAISRLMGFLLVCMGVQFIINGIL 214 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446678899999999999999998764
No 36
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=53.31 E-value=24 Score=33.34 Aligned_cols=25 Identities=4% Similarity=0.054 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcC
Q 025116 213 PIDDIAAVCLLVYFGVSTLLDAAST 237 (257)
Q Consensus 213 ~iv~i~AaiLFL~FGv~tL~ea~~~ 237 (257)
+++..+++++-+++|+|++|..++.
T Consensus 88 ~~le~~S~~lii~lGl~ll~r~~r~ 112 (279)
T PRK10019 88 PWLQLISAVIIISTAFWMFWRTWRG 112 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999987654
No 37
>PRK11111 hypothetical protein; Provisional
Probab=50.95 E-value=36 Score=30.66 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=23.7
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHhhhc
Q 025116 208 GQTDLPIDDIAAVCLLVYFGVSTLLDAAS 236 (257)
Q Consensus 208 ~~~~~~iv~i~AaiLFL~FGv~tL~ea~~ 236 (257)
|.+.+.++..+.|++...+|+.++.++.+
T Consensus 178 G~~G~~vi~RimGliL~aiaVq~i~~Gi~ 206 (214)
T PRK11111 178 GQTGINVITRIMGLLLMALGIEFIVTGIK 206 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556678899999999999999998764
No 38
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=50.41 E-value=34 Score=29.42 Aligned_cols=71 Identities=13% Similarity=0.108 Sum_probs=46.3
Q ss_pred cHHHHHHHHHHhccCC---ceeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHHHHH
Q 025116 156 DKTFFIAALLAARNSA---ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLL 232 (257)
Q Consensus 156 DKTQLatalLAaRy~~---~~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~tL~ 232 (257)
.=+.+..+.-++++++ +...+|...|.++...+++.....+ .+..|.-. .++++++++-.+++|+.+++
T Consensus 21 GP~~~~v~~~~~~~G~r~a~~~~~G~~~g~~~~~~~~~~g~~~l---~~~~p~~~-----~vlk~~Ga~YLlyLg~~~~~ 92 (195)
T PRK10323 21 GPNNILALSSATSHGFRQSTRVLAGMSLGFLIVMLLCAGISFSL---AVIDPAAV-----HLLSWAGAAYIVWLAWKIAT 92 (195)
T ss_pred ChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-----HHHHHHHHHHHHHHHHHHHh
Confidence 3345556666667664 4688899999988866666444222 22334332 34788888888889999987
Q ss_pred hh
Q 025116 233 DA 234 (257)
Q Consensus 233 ea 234 (257)
.+
T Consensus 93 s~ 94 (195)
T PRK10323 93 SP 94 (195)
T ss_pred cc
Confidence 63
No 39
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=49.71 E-value=1e+02 Score=26.80 Aligned_cols=59 Identities=12% Similarity=0.014 Sum_probs=38.2
Q ss_pred ceeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHHHHHhh
Q 025116 172 ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA 234 (257)
Q Consensus 172 ~~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~tL~ea 234 (257)
+..++|..++.+...++...+.+.+ .+..... ++.-..+++++.|++++.+|++..+..
T Consensus 32 ~af~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~l~lGv~ll~~a~~~~~~~ 90 (214)
T PF11139_consen 32 LAFLAGWFLGYLAVGLVLLFGLDAL---PSGSSSA-PSPVVGWLQLVLGVLLLLLAVRVWRRR 90 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh---ccccccC-CccHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3556677777777666666666543 2222111 234466789999999999999888764
No 40
>PRK00259 intracellular septation protein A; Reviewed
Probab=44.43 E-value=58 Score=28.74 Aligned_cols=46 Identities=22% Similarity=0.225 Sum_probs=33.2
Q ss_pred ehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHHHHH
Q 025116 175 FAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLL 232 (257)
Q Consensus 175 f~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~tL~ 232 (257)
...++.++++.+++++...... .+++|. .+++++++-++||..+++
T Consensus 22 i~~AT~~~i~a~~~~~~~~~~~---~~~v~~---------m~~i~~~lv~vfGglTl~ 67 (179)
T PRK00259 22 IYAATAALIVATVIQLAISWIR---YRKVEK---------MQLISLVVVVVFGGLTLV 67 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hCCcch---------hHHHHHHHHHHHHHHHHH
Confidence 4456667777788887777644 355543 678888899999998886
No 41
>PF03239 FTR1: Iron permease FTR1 family; InterPro: IPR004923 The Saccharomyces cerevisiae (Baker's yeast) iron permease FTR1 is a plasma membrane permease for high-affinity iron uptake. Also included in this family are bacterial hypothetical integral membrane proteins.; GO: 0055085 transmembrane transport, 0016020 membrane
Probab=43.08 E-value=77 Score=29.64 Aligned_cols=65 Identities=18% Similarity=0.166 Sum_probs=40.6
Q ss_pred CceeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCC----chhHHHHHHHHHHHHHHHHHHhhhcCCC
Q 025116 171 AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTD----LPIDDIAAVCLLVYFGVSTLLDAASTDG 239 (257)
Q Consensus 171 ~~~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~----~~iv~i~AaiLFL~FGv~tL~ea~~~~~ 239 (257)
+..|+.|+.+|++..-++++.+-.... .++..+.... --++..++.++-...++||...+.++++
T Consensus 35 ~~~V~~G~~~g~~~s~~~~~~~~~~~~----~~~~~~~~~~~e~~eg~~~liA~~li~~m~~wm~~~~~~~~~ 103 (306)
T PF03239_consen 35 RRWVWLGVAAGLVASLVIGAVFAVIFY----TLSGDYWGISEELFEGAISLIAVALITWMVFWMRRHGRKMKG 103 (306)
T ss_pred hheeeecHhHHHHHHHHHHHHHHHHHH----hhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 479999999999999998888776543 2332000000 0014556667777888888876444443
No 42
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=42.75 E-value=61 Score=31.34 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=22.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhc
Q 025116 211 DLPIDDIAAVCLLVYFGVSTLLDAAS 236 (257)
Q Consensus 211 ~~~iv~i~AaiLFL~FGv~tL~ea~~ 236 (257)
..|++.+++.++-+.+|+|++|...+
T Consensus 129 s~~~lE~~S~~Ll~~~G~w~~~r~lr 154 (303)
T COG2215 129 SEPWLELISFLLLILLGLWLLWRTLR 154 (303)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44569999999999999999998765
No 43
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=41.52 E-value=50 Score=23.80 Aligned_cols=35 Identities=17% Similarity=0.501 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHH
Q 025116 182 LAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFG 227 (257)
Q Consensus 182 L~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FG 227 (257)
-.+++.++..+|+.+ .++++ ++ .+++++++++++|
T Consensus 33 ~~~~~~~G~~~G~~~---~~~~~-~~-------~~~igg~iLi~iG 67 (67)
T PF02659_consen 33 QFIMPLLGLLLGRRL---GRFIG-SY-------AEWIGGIILIFIG 67 (67)
T ss_pred HHHHHHHHHHHHHHH---HHHHH-HH-------HHHHHHHHHHHHC
Confidence 357788888888865 35554 43 7899999988876
No 44
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=40.56 E-value=43 Score=30.27 Aligned_cols=46 Identities=20% Similarity=0.117 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHHHHHh
Q 025116 176 AGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 233 (257)
Q Consensus 176 ~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~tL~e 233 (257)
-.|+..++++|++.+.+..+.+ ++++ .++++++++-++||..|++-
T Consensus 23 ~~AT~~livAt~i~l~~~w~~~---rkv~---------km~l~s~~~v~vFG~lTl~f 68 (180)
T COG2917 23 YAATAVLIVATVIQLAILWIKY---RKVE---------KMQLISGVVVVVFGGLTLIF 68 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hhhH---------HHHHHHHHHHHHhchhHhhc
Confidence 3455666677777777665432 3333 25677777777777777663
No 45
>PRK11469 hypothetical protein; Provisional
Probab=40.35 E-value=46 Score=29.33 Aligned_cols=42 Identities=21% Similarity=0.354 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 025116 183 AAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA 235 (257)
Q Consensus 183 ~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~tL~ea~ 235 (257)
++++..++.+|+.+ ++++- ++ ..++++++.++.|+++++++.
T Consensus 145 ~~~~~~G~~lG~~~---g~~~g-~~-------a~~lgG~iLI~iGi~il~~h~ 186 (188)
T PRK11469 145 LIMSTLGMMVGRFI---GSIIG-KK-------AEILGGLVLIGIGVQILWTHF 186 (188)
T ss_pred HHHHHHHHHHHHHH---HHHHH-HH-------HHHHHHHHHHHHHHHHHHHHc
Confidence 45556666677643 23332 33 688999999999999998864
No 46
>PRK09304 arginine exporter protein; Provisional
Probab=39.76 E-value=77 Score=27.46 Aligned_cols=65 Identities=11% Similarity=0.112 Sum_probs=39.5
Q ss_pred HHHHHhccCC-ceeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHHHHHhh
Q 025116 162 AALLAARNSA-ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA 234 (257)
Q Consensus 162 talLAaRy~~-~~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~tL~ea 234 (257)
++.-+.+++. ....+|...|.++...++++.-..+ -...|.-. .++++++++-.+++|+.+++..
T Consensus 26 v~~~~~~~~~~~~~~~Gi~~g~~~~~~la~~Gl~~L---l~~~p~~~-----~~l~~~Ga~YLlyLg~~~~rs~ 91 (207)
T PRK09304 26 VMNQGIRRQYHLMIALLCALSDLVLICAGIFGGSAL---LMQSPWLL-----ALVTWGGVAFLLWYGFGAFKTA 91 (207)
T ss_pred HHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555432 3566777777777766654433322 12334322 3578888888899999999864
No 47
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=38.66 E-value=68 Score=28.03 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhhcCcHHHH----HHHHHHhccCCceeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHH
Q 025116 141 GFASAFLLIFFSELGDKTFF----IAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDD 216 (257)
Q Consensus 141 aFltAFllIFLAElGDKTQL----atalLAaRy~~~~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~ 216 (257)
.|+.+... -|+=|=.+= .|+.=+++-+.+.++.|..++..+|-..+-++.+++ ++. |+++
T Consensus 95 ~~~~~v~~---I~~~D~~fS~DsV~a~~~~~~~~~~li~~g~~i~i~~m~~~s~~~~~~~----~~~---------p~l~ 158 (176)
T TIGR03717 95 TLWAAIKT---IVIADAVMSLDNVLAVAGAAHGHLGLLIFGLLLSIPIIVWGSTLILKLM----DRF---------PWII 158 (176)
T ss_pred cHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHH----HHH---------HHHH
Confidence 34444333 344455552 233223334567899999999999988888888765 233 4588
Q ss_pred HHHHHHHHHHHHHHHH
Q 025116 217 IAAVCLLVYFGVSTLL 232 (257)
Q Consensus 217 i~AaiLFL~FGv~tL~ 232 (257)
++++.+..+.|+.++.
T Consensus 159 ~~~~~~L~~ig~kl~~ 174 (176)
T TIGR03717 159 YIGAALLGYVAGEMIV 174 (176)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999886
No 48
>PRK10621 hypothetical protein; Provisional
Probab=38.06 E-value=68 Score=28.81 Aligned_cols=47 Identities=11% Similarity=0.002 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhhc
Q 025116 180 GALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAAS 236 (257)
Q Consensus 180 lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~tL~ea~~ 236 (257)
+.+++.+.+++.+|..+ .+++|.+. .+.+..++.++.|++++++++-
T Consensus 210 l~l~~g~~~G~~lG~~l---~~~~~~~~-------lr~~~~~ll~~~~i~~~~~~~~ 256 (266)
T PRK10621 210 FVMLVGQFLGARLGARL---VLSKGQKL-------IRPMIVIVSAVMSAKLLYDSHG 256 (266)
T ss_pred HHHHHHHHHHHHHHHHH---HHHcCchH-------hHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677788888754 57788887 7888888889999999987654
No 49
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=36.62 E-value=77 Score=28.16 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=20.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhh
Q 025116 210 TDLPIDDIAAVCLLVYFGVSTLLDA 234 (257)
Q Consensus 210 ~~~~iv~i~AaiLFL~FGv~tL~ea 234 (257)
+.+.++..+.|++...+|+.++.++
T Consensus 176 ~g~~il~Ri~GliL~aIaVq~i~~G 200 (201)
T TIGR00427 176 TGINVITRIMGLLLAAIAVEFIVTG 200 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3455688899999999999998875
No 50
>COG4280 Predicted membrane protein [Function unknown]
Probab=34.25 E-value=37 Score=31.64 Aligned_cols=67 Identities=24% Similarity=0.178 Sum_probs=47.6
Q ss_pred HHHHHHHHHhccCCc-eeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 025116 158 TFFIAALLAARNSAA-TVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA 235 (257)
Q Consensus 158 TQLatalLAaRy~~~-~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~tL~ea~ 235 (257)
-.++.++|.+.++.| .-..|+..|.++.-+++.++-+.+ .++|+.. +++.++++...||..=+-++.
T Consensus 133 v~~iVialgaa~sqwleAi~gagfA~vlvlvl~~~lh~pl----arvpe~~-------lKfvag~lL~sfGtfWlgegv 200 (236)
T COG4280 133 VSLIVIALGAASSQWLEAIMGAGFASVLVLVLTAILHSPL----ARVPEPH-------LKFVAGALLFSFGTFWLGEGV 200 (236)
T ss_pred eeeeeeeechhhhHHHHHHHHHHHHHHHHHHHHHHhccHH----hhCCchh-------HHHHHHHHHHHhhHHHhcccc
Confidence 455666666666544 566777777777777777766654 4688876 899999999999987665544
No 51
>COG0730 Predicted permeases [General function prediction only]
Probab=34.04 E-value=1.4e+02 Score=26.46 Aligned_cols=55 Identities=20% Similarity=0.149 Sum_probs=41.9
Q ss_pred CceeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 025116 171 AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA 235 (257)
Q Consensus 171 ~~~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~tL~ea~ 235 (257)
+..|-.-...-+....++++.+|..+ ...+|.+. .+.+-+++.++.++++++...
T Consensus 68 ~~~v~~~~~~~l~~~~~~G~~lG~~l---~~~~~~~~-------l~~~~~~~ll~~~~~~~~~~~ 122 (258)
T COG0730 68 RGNVDWKLALILLLGALIGAFLGALL---ALLLPAEL-------LKLLFGLLLLLLALYMLLGPR 122 (258)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHH---HHhCCHHH-------HHHHHHHHHHHHHHHHHHhcc
Confidence 34566777777777778899999643 56788876 777788888999999998754
No 52
>PRK09304 arginine exporter protein; Provisional
Probab=32.42 E-value=3.3e+02 Score=23.54 Aligned_cols=24 Identities=8% Similarity=0.250 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhc
Q 025116 213 PIDDIAAVCLLVYFGVSTLLDAAS 236 (257)
Q Consensus 213 ~iv~i~AaiLFL~FGv~tL~ea~~ 236 (257)
+++++++|++|+++|++.+.++..
T Consensus 181 ~~in~~~g~~l~~~~~~l~~~~~~ 204 (207)
T PRK09304 181 RIINLFVGCVMWFIALQLARQGIA 204 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 457899999999999999987654
No 53
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=30.77 E-value=1.7e+02 Score=23.86 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhchhhhhcccCCcc
Q 025116 180 GALAAMTVISVILGRTFHYVDEILPFR 206 (257)
Q Consensus 180 lAL~l~TvLaVllG~~l~~I~~~IP~r 206 (257)
..+++.+++++++|+++ .+++|..
T Consensus 50 ~~~v~pil~G~~lG~WL---D~~~~t~ 73 (100)
T TIGR02230 50 WSVAIPTLLGVAVGIWL---DRHYPSP 73 (100)
T ss_pred HHHHHHHHHHHHHHHHH---HhhcCCC
Confidence 34667778888888854 6777654
No 54
>PRK15071 lipopolysaccharide ABC transporter permease; Provisional
Probab=30.67 E-value=2.8e+02 Score=25.71 Aligned_cols=77 Identities=12% Similarity=-0.003 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHHHhhcCcHHHHHHHHHHhccCCc-----eeehHHHHHHHH--HHHHHHHHhchhhhhcccCCccccCC
Q 025116 138 ISRGFASAFLLIFFSELGDKTFFIAALLAARNSAA-----TVFAGTFGALAA--MTVISVILGRTFHYVDEILPFRFGQT 210 (257)
Q Consensus 138 ~~~aFltAFllIFLAElGDKTQLatalLAaRy~~~-----~Vf~Ga~lAL~l--~TvLaVllG~~l~~I~~~IP~r~~~~ 210 (257)
++.-+...+..+.++ ++++.++.+..+. .+.+|..++++. ...++-.+|. ...+|...
T Consensus 271 l~~r~a~Pl~~~~~~-------lla~~~~~~~~R~~~~~~~i~~~i~~~~~y~~~~~~~~~lg~-----~g~l~P~l--- 335 (356)
T PRK15071 271 MWRKIFQPLSVAVMM-------LMALSFIFGPLRSVTMGARVVTGISFGFVFYVSNEIFGPLSL-----VYGIPPII--- 335 (356)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHhcCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCccHHH---
Confidence 344455555555555 6777777764332 234444333332 2333334444 24566554
Q ss_pred CchhHHHHHHHHHHHHHHHHHHh
Q 025116 211 DLPIDDIAAVCLLVYFGVSTLLD 233 (257)
Q Consensus 211 ~~~iv~i~AaiLFL~FGv~tL~e 233 (257)
.-|+--++|+++|+++++.
T Consensus 336 ----aaw~P~iif~~~~~~ll~r 354 (356)
T PRK15071 336 ----GALLPSLLFLGISLYLLRR 354 (356)
T ss_pred ----HHHHHHHHHHHHHHHHHhh
Confidence 6778888999999998864
No 55
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=30.63 E-value=1e+02 Score=22.61 Aligned_cols=22 Identities=18% Similarity=0.001 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 025116 215 DDIAAVCLLVYFGVSTLLDAAS 236 (257)
Q Consensus 215 v~i~AaiLFL~FGv~tL~ea~~ 236 (257)
-..+.+++|+.+|+.++.-+..
T Consensus 3 G~~~~givy~~lg~~a~~~a~~ 24 (73)
T PF06724_consen 3 GYAARGIVYGALGYLALQAALG 24 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 3578899999999999988875
No 56
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=30.38 E-value=3.8e+02 Score=25.54 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhhcCcHH--HHHHHHHHhccCCceeehHHHH
Q 025116 140 RGFASAFLLIFFSELGDKT--FFIAALLAARNSAATVFAGTFG 180 (257)
Q Consensus 140 ~aFltAFllIFLAElGDKT--QLatalLAaRy~~~~Vf~Ga~l 180 (257)
.+.+.+|++.++.-+.-|. -.++...|.-- .||+|++.
T Consensus 93 ~g~i~glvl~lv~~F~~~~~sp~l~~~YA~~E---G~flG~iS 132 (274)
T PF12811_consen 93 VGAIGGLVLALVISFKRKVWSPALAPIYAVLE---GVFLGGIS 132 (274)
T ss_pred HHHHHHHHHHHHHHhCCccCChHHHHHHHHHH---HHHHHHHH
Confidence 4455667777777777654 45555544432 35555544
No 57
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=29.60 E-value=93 Score=30.62 Aligned_cols=83 Identities=22% Similarity=0.156 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHhccCCceeehHHHHHHHHHHHHHHHHhchhhh-hcccCCccccCCCchhHHHH
Q 025116 140 RGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHY-VDEILPFRFGQTDLPIDDIA 218 (257)
Q Consensus 140 ~aFltAFllIFLAElGDKTQLatalLAaRy~~~~Vf~Ga~lAL~l~TvLaVllG~~l~~-I~~~IP~r~~~~~~~iv~i~ 218 (257)
+.++.+++.=++=-+|--| -.|++|| ..|=+|..+++-++++++.++.-.++- ....+..+ .-+ -++
T Consensus 71 ~~l~~~~l~G~lWGIGglt----fGl~mry--LGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~----~g~--~vL 138 (344)
T PF06379_consen 71 STLFWTFLFGVLWGIGGLT----FGLAMRY--LGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATP----SGQ--IVL 138 (344)
T ss_pred hHHHHHHHHHHHHhcchhh----HhHHHHH--HhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCC----Cch--hhh
Confidence 3455556666667777654 4778887 566667777777776666666443210 01111111 111 245
Q ss_pred HHHHHHHHHHHHHHhh
Q 025116 219 AVCLLVYFGVSTLLDA 234 (257)
Q Consensus 219 AaiLFL~FGv~tL~ea 234 (257)
.+++-.+.|+...-.|
T Consensus 139 ~Gv~v~LiGIai~g~A 154 (344)
T PF06379_consen 139 LGVAVCLIGIAICGKA 154 (344)
T ss_pred hHHHHHHHHHHHHhHH
Confidence 5666667777655443
No 58
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=29.38 E-value=2e+02 Score=25.96 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=45.0
Q ss_pred CcHHHHHHHHHHhccCC-ceeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHHHHHh
Q 025116 155 GDKTFFIAALLAARNSA-ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 233 (257)
Q Consensus 155 GDKTQLatalLAaRy~~-~~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~tL~e 233 (257)
|+-|-=+++.++.+++. ..+.+++++...+.+.+.-.....+ .+ ..|++.+.++..+.|++...+|+.++.+
T Consensus 122 GPg~Ist~i~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~s~~i---~r----~lG~~G~~~~~RimGllL~al~vq~i~~ 194 (203)
T COG2095 122 GPGTIATVIVLSSQYGNSKLAVVLAILLASLLTYLILLSSSRI---MR----LLGKTGLNALTRIMGLLLAALGVQMILD 194 (203)
T ss_pred CcHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566667777777662 2333333333333333333333322 23 3345566678889999999999999998
Q ss_pred hhc
Q 025116 234 AAS 236 (257)
Q Consensus 234 a~~ 236 (257)
+.+
T Consensus 195 Gl~ 197 (203)
T COG2095 195 GLR 197 (203)
T ss_pred HHH
Confidence 764
No 59
>PF03239 FTR1: Iron permease FTR1 family; InterPro: IPR004923 The Saccharomyces cerevisiae (Baker's yeast) iron permease FTR1 is a plasma membrane permease for high-affinity iron uptake. Also included in this family are bacterial hypothetical integral membrane proteins.; GO: 0055085 transmembrane transport, 0016020 membrane
Probab=28.77 E-value=1.4e+02 Score=27.88 Aligned_cols=85 Identities=27% Similarity=0.262 Sum_probs=50.9
Q ss_pred chhHHHHHHHHHHHHhhcCcHHHHHHHHHHhccC--CceeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchh
Q 025116 137 DISRGFASAFLLIFFSELGDKTFFIAALLAARNS--AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPI 214 (257)
Q Consensus 137 ~~~~aFltAFllIFLAElGDKTQLatalLAaRy~--~~~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~i 214 (257)
+.+..|+.+|+.+ +=| |=-|=+....+++.-+ ...+..|+.+|+++..+++.++-+.. ..+|.+.
T Consensus 131 ~~~~l~~~afl~v-lRE-G~E~vLfl~a~~~~~~~~~~~~~~g~~~G~~~a~~~~~~~~~~~----~~i~~~~------- 197 (306)
T PF03239_consen 131 SKWALFLLAFLIV-LRE-GLEAVLFLAALAASLRKDAASILLGAILGIAAAVVLGWLLYRGL----IRISLRS------- 197 (306)
T ss_pred hhhHHHHHHHHHH-HHh-hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH----HhcChHH-------
Confidence 4566777777443 233 4445555555555543 57888899999888888888876643 3566654
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 025116 215 DDIAAVCLLVYFGVSTLLDA 234 (257)
Q Consensus 215 v~i~AaiLFL~FGv~tL~ea 234 (257)
.-.+.+++.++.+.-++..+
T Consensus 198 ~f~~~~~~ll~~aa~L~~~~ 217 (306)
T PF03239_consen 198 FFIITGVLLLLIAAGLLGVG 217 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445554444444444444
No 60
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.77 E-value=1e+02 Score=26.41 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=13.8
Q ss_pred hhcCcHHHHHHHHHHhc
Q 025116 152 SELGDKTFFIAALLAAR 168 (257)
Q Consensus 152 AElGDKTQLatalLAaR 168 (257)
|||-||-||.-+..=.|
T Consensus 33 a~W~DKdellDViyW~r 49 (129)
T KOG3415|consen 33 AEWPDKDELLDVIYWIR 49 (129)
T ss_pred ccCCCHHHHHHHHHHHH
Confidence 79999999988776444
No 61
>PF04279 IspA: Intracellular septation protein A ; InterPro: IPR006008 Intracellular septation protein A is a family of proteins which are essential for both normal cell division and bacterial virulence and are believed to play a role in the septation process [].; GO: 0016021 integral to membrane
Probab=28.69 E-value=1.5e+02 Score=25.87 Aligned_cols=44 Identities=23% Similarity=0.198 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHHHHHh
Q 025116 178 TFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 233 (257)
Q Consensus 178 a~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~tL~e 233 (257)
++.+.++.+++.++..... .+++|. .+++++++-++||..+++-
T Consensus 25 At~~~i~~~~~~v~~~~~~---~r~v~~---------~~~is~~lv~vfG~lTl~~ 68 (176)
T PF04279_consen 25 ATAVLIVATLAQVAYSWIR---RRKVPK---------MQWISLVLVLVFGGLTLLF 68 (176)
T ss_pred HHHHHHHHHHHHHHHHHHH---hCcCch---------hHHHHHHHHHHHHHHHHHh
Confidence 3445555666666655533 244432 6788888888999888874
No 62
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=27.93 E-value=1.8e+02 Score=24.22 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHHH
Q 025116 213 PIDDIAAVCLLVYFGVS 229 (257)
Q Consensus 213 ~iv~i~AaiLFL~FGv~ 229 (257)
+++++++|++++++|++
T Consensus 168 ~~in~~~g~~l~~~~v~ 184 (185)
T TIGR00949 168 KWIDGITGALFVGFGIR 184 (185)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 44788899999999986
No 63
>COG0730 Predicted permeases [General function prediction only]
Probab=27.69 E-value=1e+02 Score=27.28 Aligned_cols=45 Identities=18% Similarity=0.188 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 025116 181 ALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA 235 (257)
Q Consensus 181 AL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~tL~ea~ 235 (257)
.+++.+++++.+|..+ .+++|++. .+.+-+++.++.+++++++..
T Consensus 211 ~l~~g~~~G~~lG~~l---~~~~~~~~-------lr~~~~~~~~~~~~~~~~~~~ 255 (258)
T COG0730 211 LLAVGSILGAYLGARL---ARRLSPKV-------LRRLFALVLLAVAIKLLLRGL 255 (258)
T ss_pred HHHHHHHHHHHHHHHH---HHhcCHHH-------HHHHHHHHHHHHHHHHHHHhc
Confidence 6788888888999864 46788776 788888888889999887643
No 64
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=27.22 E-value=1e+02 Score=26.37 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=30.0
Q ss_pred ehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHH
Q 025116 175 FAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVS 229 (257)
Q Consensus 175 f~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~ 229 (257)
.+...+.+...+.+++.+|+.+ .+++|++. .+.+..++.++.|+.
T Consensus 195 ~~~~~~~~~~~~~~G~~lG~~~---~~~i~~~~-------~~~~~~~ll~~~~~~ 239 (240)
T PF01925_consen 195 MLLLSLILLPGAFLGAFLGAKL---ARKIPQKV-------FRRIFLILLLLSGLK 239 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHhCCHHH-------HHHHHHHHHHHHHHH
Confidence 3344445677777888888754 47788766 677777776776664
No 65
>PF10864 DUF2663: Protein of unknown function (DUF2663); InterPro: IPR020210 This entry represents a group of uncharacterised transmembrane proteins.
Probab=27.01 E-value=99 Score=26.54 Aligned_cols=20 Identities=20% Similarity=0.111 Sum_probs=13.4
Q ss_pred hcCCCCCchHHHHHHHHhhh
Q 025116 235 ASTDGLKSEDEQKENFQEMV 254 (257)
Q Consensus 235 ~~~~~~~~eeE~~e~~~e~~ 254 (257)
+..+.|++|+|..+-..|-|
T Consensus 77 ~~kK~eKAEkefhaLRcEiI 96 (130)
T PF10864_consen 77 LKKKEEKAEKEFHALRCEII 96 (130)
T ss_pred HHhhHHHHHHHHHHHHHHHH
Confidence 34577888888866555544
No 66
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=26.97 E-value=3e+02 Score=26.13 Aligned_cols=77 Identities=14% Similarity=0.018 Sum_probs=45.6
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhccCCceeehHHHHHHHHHHHHHHHHhchhhhhcccCC--ccccCCCchhHHHHHHHHH
Q 025116 146 FLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILP--FRFGQTDLPIDDIAAVCLL 223 (257)
Q Consensus 146 FllIFLAElGDKTQLatalLAaRy~~~~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP--~r~~~~~~~iv~i~AaiLF 223 (257)
++++|..-+|+=+.=++..+++- +|+.+.+.+..++.+.-.+.. .++.+ .++ ++.+-++++++-
T Consensus 197 ~VLL~a~~lg~~~~Gi~~vlafs-------lGtaltm~~vgll~~~~~r~~---~~~~~~~~~~----~~~~p~~s~~l~ 262 (279)
T PRK10019 197 TVLLICIQLKALTLGATLVLSFS-------IGLALTLVTVGVGAAISVQQA---AKRWSGFNTL----ARRAPYFSSLLI 262 (279)
T ss_pred HHHHHHHHhchHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHH----HHHHHHHHHHHH
Confidence 44666667777666666666654 466666666666654333311 12222 122 111238999999
Q ss_pred HHHHHHHHHhhhc
Q 025116 224 VYFGVSTLLDAAS 236 (257)
Q Consensus 224 L~FGv~tL~ea~~ 236 (257)
+++|+++.|+.+.
T Consensus 263 i~~G~~~~~~~~~ 275 (279)
T PRK10019 263 GLVGVYMGVHGFM 275 (279)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998653
No 67
>PF03739 YjgP_YjgQ: Predicted permease YjgP/YjgQ family; InterPro: IPR005495 Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long, contain about 6 transmembrane regions and may be permeases, although there is no verification of this.; GO: 0016021 integral to membrane
Probab=26.46 E-value=1.7e+02 Score=26.65 Aligned_cols=76 Identities=14% Similarity=0.196 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHHHhhcCcHHHHHHHHHHhccCCc----eeehHHHHHHH--HHHHHHHHHhchhhhhcccCCccccCCC
Q 025116 138 ISRGFASAFLLIFFSELGDKTFFIAALLAARNSAA----TVFAGTFGALA--AMTVISVILGRTFHYVDEILPFRFGQTD 211 (257)
Q Consensus 138 ~~~aFltAFllIFLAElGDKTQLatalLAaRy~~~----~Vf~Ga~lAL~--l~TvLaVllG~~l~~I~~~IP~r~~~~~ 211 (257)
+..-+...+..++++ ++++.++.++++. .++.|..++++ ....++..+|. ...+|.-+
T Consensus 272 l~~R~~~p~~~l~~~-------lla~~l~~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-----~~~l~p~~---- 335 (354)
T PF03739_consen 272 LHKRIALPLSCLILV-------LLALPLGIRFPRSGRISSLFIALLLGFLYYILFSFFSSLGE-----NGNLPPFI---- 335 (354)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCccHHH----
Confidence 345556666666655 5667788886543 23333333333 22222223332 23455544
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 025116 212 LPIDDIAAVCLLVYFGVSTLL 232 (257)
Q Consensus 212 ~~iv~i~AaiLFL~FGv~tL~ 232 (257)
.-|+.-++|+++|+++++
T Consensus 336 ---a~w~p~ii~~~~~~~l~~ 353 (354)
T PF03739_consen 336 ---AAWLPNIIFLILGLYLLR 353 (354)
T ss_pred ---HHHHHHHHHHHHHHHHHh
Confidence 778888999999988875
No 68
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=26.32 E-value=98 Score=27.82 Aligned_cols=69 Identities=19% Similarity=0.287 Sum_probs=44.8
Q ss_pred HHHHHHHHHhccCC-ceeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhH-HHHHHHHHHHHHHHHHHh
Q 025116 158 TFFIAALLAARNSA-ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPID-DIAAVCLLVYFGVSTLLD 233 (257)
Q Consensus 158 TQLatalLAaRy~~-~~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv-~i~AaiLFL~FGv~tL~e 233 (257)
+-+++.+.-+-.++ ...|.|..=|++...++=.++|-.+. .+|.- .+++.. -+...++|+..|+..=|.
T Consensus 81 Si~aAllY~~~l~k~~g~W~Gi~YG~~~W~ivF~~lnP~fp----~~~~~---~~l~~nTiiT~~CiyiLyGlFIGYS 151 (173)
T PF11085_consen 81 SIVAALLYYALLKKFKGPWPGILYGLAWWAIVFFVLNPIFP----MIKPV---TELDWNTIITTLCIYILYGLFIGYS 151 (173)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccccc----CChhh---hhCchhHHHHHHHHHHHHHHHhcee
Confidence 34555555555554 47899999999999999999997652 22211 122222 345678889989765443
No 69
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=26.31 E-value=86 Score=23.05 Aligned_cols=23 Identities=17% Similarity=0.004 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC
Q 025116 215 DDIAAVCLLVYFGVSTLLDAAST 237 (257)
Q Consensus 215 v~i~AaiLFL~FGv~tL~ea~~~ 237 (257)
+-.+.++.++.+|+|.+++++..
T Consensus 49 ll~~vg~gli~~gi~~~~~a~~~ 71 (73)
T PF06724_consen 49 LLGAVGLGLIGYGIWQFVKAVYR 71 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 56788889999999999998753
No 70
>PRK11111 hypothetical protein; Provisional
Probab=26.19 E-value=95 Score=27.97 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=32.0
Q ss_pred eehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHHHHHh
Q 025116 174 VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 233 (257)
Q Consensus 174 Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~tL~e 233 (257)
.+-.+..+.+++. +..++|+++ -+.+- =+++-.++++|++.+.+|+.|+..
T Consensus 46 a~~a~l~a~~ill-~f~~~G~~i---L~~fG-----Isl~afrIaGGiiL~~ial~Ml~g 96 (214)
T PRK11111 46 NLTANLSVAIILL-ISLFLGDFI---LNLFG-----ISIDSFRIAGGILVVTIAMSMISG 96 (214)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHH---HHHhC-----CCHHHHHHHHHHHHHHHHHHHhCC
Confidence 3344444444444 556777754 23321 134458999999999999999854
No 71
>PF14007 YtpI: YtpI-like protein
Probab=25.60 E-value=83 Score=25.23 Aligned_cols=22 Identities=9% Similarity=0.227 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 025116 215 DDIAAVCLLVYFGVSTLLDAAS 236 (257)
Q Consensus 215 v~i~AaiLFL~FGv~tL~ea~~ 236 (257)
++++.+++|+++|+..++.+++
T Consensus 58 ~~~iV~~ifl~lG~~n~~~G~r 79 (89)
T PF14007_consen 58 VRLIVGAIFLVLGLFNLFAGIR 79 (89)
T ss_pred HHHHHHHHHHHHhHHHHHHHHH
Confidence 6788999999999999988765
No 72
>PF11364 DUF3165: Protein of unknown function (DUF3165); InterPro: IPR021506 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=24.72 E-value=3.2e+02 Score=21.91 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCC
Q 025116 216 DIAAVCLLVYFGVSTLLDAASTDGL 240 (257)
Q Consensus 216 ~i~AaiLFL~FGv~tL~ea~~~~~~ 240 (257)
.+..++..++.|.+.++|-.++++.
T Consensus 55 Eifv~~~Mi~l~y~alrDi~~l~~k 79 (81)
T PF11364_consen 55 EIFVGLAMIVLGYFALRDISKLSTK 79 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 4678888899999999998876653
No 73
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=24.36 E-value=1.1e+02 Score=31.05 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=31.8
Q ss_pred eehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHHHH
Q 025116 174 VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTL 231 (257)
Q Consensus 174 Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~tL 231 (257)
-.+|.++.+.+..+++.++|..++ ..+ +.|++.++.+++|++||+.++
T Consensus 215 y~lG~~~ty~~lG~~a~~~G~~~~---~~~-------q~~~~~~~~~~l~v~lgL~~~ 262 (571)
T PRK00293 215 YVQGMALTYTLLGLVVAAAGLQFQ---AAL-------QHPYVLIGLSILFVLLALSMF 262 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHh-------hhHHHHHHHHHHHHHHHHHHh
Confidence 356666666666667777776442 111 123467888999999999885
No 74
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=24.24 E-value=3.1e+02 Score=25.35 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHH
Q 025116 142 FASAFLLIFFSELGDKTFFIAALLA 166 (257)
Q Consensus 142 FltAFllIFLAElGDKTQLatalLA 166 (257)
|..-++..|++.+||.+...++..-
T Consensus 5 f~~l~~~~~~~~~~~~~~~~~~~~~ 29 (393)
T PRK11195 5 FYAIMAAQFFSALADNALLFAAIAL 29 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556677777777665544433
No 75
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=24.21 E-value=93 Score=23.99 Aligned_cols=14 Identities=14% Similarity=0.339 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHH
Q 025116 218 AAVCLLVYFGVSTL 231 (257)
Q Consensus 218 ~AaiLFL~FGv~tL 231 (257)
+.+++|+++|+..+
T Consensus 2 i~~~if~ilg~li~ 15 (97)
T PF12650_consen 2 IIALIFFILGILIL 15 (97)
T ss_pred cHHHHHHHHHHHHH
Confidence 45677888887744
No 76
>PRK10621 hypothetical protein; Provisional
Probab=23.59 E-value=1.9e+02 Score=26.02 Aligned_cols=51 Identities=18% Similarity=0.081 Sum_probs=38.5
Q ss_pred eeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHHHHHh
Q 025116 173 TVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 233 (257)
Q Consensus 173 ~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~tL~e 233 (257)
.|=.-...-+.+..++++.+|.++ ...+|.+. .+++-+++.++.++++++.
T Consensus 74 ~v~~~~~~~l~~~~l~Ga~~G~~l---~~~l~~~~-------l~~~~~~~ll~~~~~~l~~ 124 (266)
T PRK10621 74 VVNLADQKLNIAMTFVGSMSGALL---VQYVQADI-------LRQILPILVIGIGLYFLLM 124 (266)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH---HHhCCHHH-------HHHHHHHHHHHHHHHHHHC
Confidence 455566667778888899999854 56788876 7777778888888888764
No 77
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=23.33 E-value=2.3e+02 Score=20.29 Aligned_cols=47 Identities=17% Similarity=0.113 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHHHHHh
Q 025116 177 GTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 233 (257)
Q Consensus 177 Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~tL~e 233 (257)
+..-+.++.++....+|-+- .+--+.+| --++.+.+|.+|+..++-.
T Consensus 3 ~~~~~~f~i~~~~~~iGl~~--~~~~l~~K--------Gy~~~~~l~~l~s~~tl~K 49 (53)
T PF05360_consen 3 GQSWISFGISIVLMLIGLWN--APLDLSEK--------GYYAMGLLFLLFSAFTLQK 49 (53)
T ss_pred hHHHHHHHHHHHHHHHHHHh--CCCCHHHH--------HHHHHHHHHHHHHHHhhhh
Confidence 33444555566666667542 22223333 4688999999999988865
No 78
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=22.60 E-value=3.2e+02 Score=24.37 Aligned_cols=84 Identities=14% Similarity=0.039 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHhccCCceeehHHHHHHHHHHHHHHHHhchhhhh-cccCCccccCCCchhHHHH
Q 025116 140 RGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYV-DEILPFRFGQTDLPIDDIA 218 (257)
Q Consensus 140 ~aFltAFllIFLAElGDKTQLatalLAaRy~~~~Vf~Ga~lAL~l~TvLaVllG~~l~~I-~~~IP~r~~~~~~~iv~i~ 218 (257)
..++..++=-+..++++=.++. .+..+++..++ ..+...+++-+++++|..+... ....... -..+..-+
T Consensus 202 ~~~~ai~~Hk~~e~~~~~~~l~----~~~~~~~~~~~-~~~~~sl~~piG~~ig~~~~~~~~~~~~~~----~~~~~~a~ 272 (317)
T PF02535_consen 202 SLFIAIILHKIPEGFALGSILV----KAGFSKRKALL-LLLLFSLSTPIGALIGIAISNSGSSSSSDI----VSGILLAF 272 (317)
T ss_pred HHHHHHHHhHhHHHhhhhhhhh----hhccccchhhH-HHHHHHHHHHHHHHHHHHhcccCccchhHH----HHHHHHHH
Confidence 3333333334455556554444 33444554444 7777888899999999764000 0111111 11234455
Q ss_pred HHHHHHHHHHHHHH
Q 025116 219 AVCLLVYFGVSTLL 232 (257)
Q Consensus 219 AaiLFL~FGv~tL~ 232 (257)
++..|++.++.-+.
T Consensus 273 aaG~~lyv~~~ell 286 (317)
T PF02535_consen 273 AAGTFLYVAFVELL 286 (317)
T ss_pred HHHHHHHHHHHHHH
Confidence 66677777776443
No 79
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=22.03 E-value=2e+02 Score=25.48 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=32.2
Q ss_pred eeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHHHHHh
Q 025116 173 TVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 233 (257)
Q Consensus 173 ~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~tL~e 233 (257)
..+-.+..+.+++- +..++|..+ -+.+ +-+++-.++++|++.+..|+.|+..
T Consensus 42 ia~~~~l~a~~ill-~f~~~G~~i---L~~f-----gIsl~afrIaGGiiL~~ia~~ml~~ 93 (201)
T TIGR00427 42 IAKKANISSFIILL-IFLVFGDTI---LKLF-----GISIDAFRIAGGILLFTIAMDMLSG 93 (201)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHH---HHHh-----CCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 34444444444444 455566644 1232 1234558999999999999999865
No 80
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=21.75 E-value=4.5e+02 Score=24.53 Aligned_cols=78 Identities=21% Similarity=0.177 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhc---CcHHHHHHHHHH---hccCCceeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHH
Q 025116 143 ASAFLLIFFSEL---GDKTFFIAALLA---ARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDD 216 (257)
Q Consensus 143 ltAFllIFLAEl---GDKTQLatalLA---aRy~~~~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~ 216 (257)
+.++.+..+-|. +|+-.+++++.. -++++...+.|..+|+++-.++-. .|.++ -+ ++.. .-
T Consensus 17 ~~~l~tl~~lE~vL~iDN~iviai~~~~Lp~~qr~ral~~Gl~~A~v~R~~ll~-~~s~L---l~-l~~~--------l~ 83 (254)
T COG0861 17 WVALLTLILLEIVLGIDNAIVIAILASKLPPKQRKKALFIGLAGALVLRIILLA-SISWL---LT-LTQP--------LL 83 (254)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---HH-hhHH--------HH
Confidence 356667777775 899887765432 123346889999888877655544 34433 12 2211 23
Q ss_pred HHHHHHHHHHHHHHHHh
Q 025116 217 IAAVCLLVYFGVSTLLD 233 (257)
Q Consensus 217 i~AaiLFL~FGv~tL~e 233 (257)
++.|..++.-++.++++
T Consensus 84 ~~fg~~L~~~~~~ll~~ 100 (254)
T COG0861 84 YIFGLYLLWRDIKLLLG 100 (254)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34567777777777775
No 81
>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation. DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=21.73 E-value=2.1e+02 Score=24.76 Aligned_cols=47 Identities=30% Similarity=0.232 Sum_probs=32.5
Q ss_pred eehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHHHHH
Q 025116 174 VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLL 232 (257)
Q Consensus 174 Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~tL~ 232 (257)
..+|..+.+.+..++...+|+.+. .. .. +..++++++++++|+.++.
T Consensus 47 f~~G~~~~~~~lG~~~~~~g~~~~---~~--~~-------~~~~i~g~~~i~~Gl~~l~ 93 (211)
T PF02683_consen 47 FVLGFALVFALLGLGAGALGSFFG---QI--SP-------WLYIIAGVLLILFGLSLLG 93 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HH--HH-------HHHHHHHHHHHHHHHHHHH
Confidence 446777777777777777777552 11 11 2678999999999998774
No 82
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=21.10 E-value=2.1e+02 Score=25.14 Aligned_cols=22 Identities=32% Similarity=0.250 Sum_probs=19.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHh
Q 025116 212 LPIDDIAAVCLLVYFGVSTLLD 233 (257)
Q Consensus 212 ~~iv~i~AaiLFL~FGv~tL~e 233 (257)
.++.+++.|++|+.+|++++++
T Consensus 185 ~~~~~~~~G~~li~~g~~l~~~ 206 (208)
T COG1280 185 SRIINRLFGVLLIGFGVKLALS 206 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3568999999999999999875
No 83
>PRK03557 zinc transporter ZitB; Provisional
Probab=20.82 E-value=2.6e+02 Score=26.05 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhc
Q 025116 214 IDDIAAVCLLVYFGVSTLLDAAS 236 (257)
Q Consensus 214 iv~i~AaiLFL~FGv~tL~ea~~ 236 (257)
+.-++.+++.+.-|+.+++++..
T Consensus 188 i~~ilis~~i~~~~~~l~~~~~~ 210 (312)
T PRK03557 188 ILSILVSVLVLRSAWRLLKESVN 210 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777888888999999854
No 84
>PRK10229 threonine efflux system; Provisional
Probab=20.70 E-value=1.3e+02 Score=25.76 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 025116 213 PIDDIAAVCLLVYFGVSTLLD 233 (257)
Q Consensus 213 ~iv~i~AaiLFL~FGv~tL~e 233 (257)
++++.++|++|+.+|++++.+
T Consensus 185 ~~in~~~g~~li~~~i~l~~~ 205 (206)
T PRK10229 185 KWIDGFAGALFAGFGIHLIIS 205 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 347889999999999998864
No 85
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=20.58 E-value=3.9e+02 Score=22.50 Aligned_cols=89 Identities=21% Similarity=0.228 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHhhcCcHHHHHHHHHHhccC--C---ceeehHHHHHHHHHHHHHHHHhchh-hhhcccCCccccCCCc
Q 025116 139 SRGFASAFLLIFFSELGDKTFFIAALLAARNS--A---ATVFAGTFGALAAMTVISVILGRTF-HYVDEILPFRFGQTDL 212 (257)
Q Consensus 139 ~~aFltAFllIFLAElGDKTQLatalLAaRy~--~---~~Vf~Ga~lAL~l~TvLaVllG~~l-~~I~~~IP~r~~~~~~ 212 (257)
+.-+....++..++|..| .++...-+-||+ + +.-.+|+++++++...++.++|-.+ .++.+++ .+.|.
T Consensus 30 ~~~l~~~~~l~~l~~~~d--~~~~~~~ak~~G~s~~~~~ga~iG~IvG~f~~~p~G~iiG~~~Ga~l~El~----~~~~~ 103 (140)
T PF04306_consen 30 WWFLAILAVLALLGEVLD--YLAGAYGAKRFGASRWGIWGAIIGGIVGFFVLPPLGLIIGPFLGAFLGELL----RGKDF 103 (140)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----hCCCH
Confidence 456677777777888877 355555566666 2 3445666666666666666666544 2233332 22334
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 025116 213 PIDDIAAVCLLVYFGVSTLLD 233 (257)
Q Consensus 213 ~iv~i~AaiLFL~FGv~tL~e 233 (257)
+-.-..+...+..+..-++.+
T Consensus 104 ~~A~~~~~ga~~g~~~g~~~k 124 (140)
T PF04306_consen 104 RRALRAGIGALVGFLAGTLIK 124 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555665555544
Done!