Query 025116
Match_columns 257
No_of_seqs 154 out of 1144
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 04:04:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025116.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025116hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 44.7 55 0.0019 26.2 6.4 17 217-233 87-103 (137)
2 2lx0_A Membrane fusion protein 26.4 65 0.0022 20.5 3.1 17 216-232 11-27 (32)
3 2zy9_A Mg2+ transporter MGTE; 13.8 3.7E+02 0.013 25.0 6.7 61 172-232 407-469 (473)
4 2y69_D Cytochrome C oxidase su 13.1 2.5E+02 0.0086 23.8 4.8 20 237-256 128-147 (169)
5 1v54_D Cytochrome C oxidase su 12.3 2.8E+02 0.0097 23.0 4.8 20 237-256 106-125 (147)
6 1p7a_A BF3, BKLF, kruppel-like 12.3 1.3E+02 0.0046 16.4 2.1 20 9-28 1-20 (37)
7 2epx_A Zinc finger protein 28 9.8 1.8E+02 0.0063 16.8 2.2 20 8-27 1-20 (47)
8 1q90_G Cytochrome B6F complex 9.3 2.3E+02 0.0079 18.8 2.6 25 174-198 5-29 (37)
9 4ain_A Glycine betaine transpo 8.5 8.4E+02 0.029 24.0 7.4 54 136-189 410-468 (539)
10 1vf5_G Protein PET G; photosyn 7.9 1.7E+02 0.0059 19.4 1.5 25 174-198 5-29 (37)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=44.73 E-value=55 Score=26.24 Aligned_cols=17 Identities=18% Similarity=0.073 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHh
Q 025116 217 IAAVCLLVYFGVSTLLD 233 (257)
Q Consensus 217 i~AaiLFL~FGv~tL~e 233 (257)
.+.|+++++.|+..+..
T Consensus 87 ~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 87 AIIGMMLICAGVLIINL 103 (137)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 35677779999988753
No 2
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=26.42 E-value=65 Score=20.47 Aligned_cols=17 Identities=18% Similarity=0.295 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025116 216 DIAAVCLLVYFGVSTLL 232 (257)
Q Consensus 216 ~i~AaiLFL~FGv~tL~ 232 (257)
-+++-+-|+.||+|...
T Consensus 11 glvalltflafgfwlfk 27 (32)
T 2lx0_A 11 GLVALLTFLAFGFWLFK 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566679999999763
No 3
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=13.76 E-value=3.7e+02 Score=25.02 Aligned_cols=61 Identities=16% Similarity=0.234 Sum_probs=33.1
Q ss_pred ceeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHH--HHHHHHHHHHHHH
Q 025116 172 ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAA--VCLLVYFGVSTLL 232 (257)
Q Consensus 172 ~~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~A--aiLFL~FGv~tL~ 232 (257)
+.+.+-..++++++..++.++|..+.++.+++-..--...-|.+.-+. ..+|++||+.+++
T Consensus 407 ~~~~~~v~~a~~~~~~~a~~~g~~~p~~~~~~~~DPa~~s~p~itt~~D~~g~~~~~~~a~~~ 469 (473)
T 2zy9_A 407 PLLLPVVGVSLVLIVFFANLVGAMLPFLLRRLGVDPALVSNPLVATLSDVTGLLIYLSVARLL 469 (473)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTCCGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 334445566777778888889988766655552111111233332221 2356677766543
No 4
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=13.09 E-value=2.5e+02 Score=23.83 Aligned_cols=20 Identities=15% Similarity=0.029 Sum_probs=14.4
Q ss_pred CCCCCchHHHHHHHHhhhhc
Q 025116 237 TDGLKSEDEQKENFQEMVLE 256 (257)
Q Consensus 237 ~~~~~~eeE~~e~~~e~~~~ 256 (257)
......++|.+|+..|-+++
T Consensus 128 p~P~T~~~Ewqeaq~erml~ 147 (169)
T 2y69_D 128 PIPHTFEEEWVAKQTKRMLD 147 (169)
T ss_dssp CCCGGGSHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 44556688888888887664
No 5
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=12.32 E-value=2.8e+02 Score=22.95 Aligned_cols=20 Identities=15% Similarity=0.029 Sum_probs=14.2
Q ss_pred CCCCCchHHHHHHHHhhhhc
Q 025116 237 TDGLKSEDEQKENFQEMVLE 256 (257)
Q Consensus 237 ~~~~~~eeE~~e~~~e~~~~ 256 (257)
......++|.+|+..|-+++
T Consensus 106 p~P~T~~~Ewqeaq~erm~~ 125 (147)
T 1v54_D 106 PIPHTFEEEWVAKQTKRMLD 125 (147)
T ss_dssp CCCGGGSHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 44556688888888877664
No 6
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=12.26 E-value=1.3e+02 Score=16.42 Aligned_cols=20 Identities=10% Similarity=0.150 Sum_probs=14.2
Q ss_pred cccccccCCCCCCCCCCCCC
Q 025116 9 SGLKAHSLPSSASYPKASKS 28 (257)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~ 28 (257)
++.+.|.-..|+.|+.-.|.
T Consensus 1 ~H~~~h~~~k~~~C~~C~k~ 20 (37)
T 1p7a_A 1 GSTRGSTGIKPFQCPDCDRS 20 (37)
T ss_dssp CCSSTTCCSSSBCCTTTCCC
T ss_pred CCCCcCCCCCCccCCCCCcc
Confidence 35677887888888865553
No 7
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=9.85 E-value=1.8e+02 Score=16.77 Aligned_cols=20 Identities=10% Similarity=-0.144 Sum_probs=15.1
Q ss_pred ccccccccCCCCCCCCCCCC
Q 025116 8 WSGLKAHSLPSSASYPKASK 27 (257)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~ 27 (257)
+++.+.|.-..|+.|+.=.|
T Consensus 1 ~~H~~~H~~~k~~~C~~C~k 20 (47)
T 2epx_A 1 GSSGSSGTGKKPYECIECGK 20 (47)
T ss_dssp CCCCCCCCCCCSBCCSSSCC
T ss_pred CccccccCCCCCEECCccCc
Confidence 46788898888888876444
No 8
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=9.26 E-value=2.3e+02 Score=18.77 Aligned_cols=25 Identities=16% Similarity=0.397 Sum_probs=18.7
Q ss_pred eehHHHHHHHHHHHHHHHHhchhhh
Q 025116 174 VFAGTFGALAAMTVISVILGRTFHY 198 (257)
Q Consensus 174 Vf~Ga~lAL~l~TvLaVllG~~l~~ 198 (257)
...|.++|++.+|+.+.++-..++|
T Consensus 5 lL~GIVlGlipvtlaGLfv~Ay~Qy 29 (37)
T 1q90_G 5 LLCGIVLGLVPVTIAGLFVTAYLQY 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHhhHHHHHHHHHHHHHHHH
Confidence 3568888888888888877766543
No 9
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=8.54 E-value=8.4e+02 Score=23.95 Aligned_cols=54 Identities=20% Similarity=0.203 Sum_probs=41.0
Q ss_pred cchhHHHHHHHHHHHHhhcCcHHHHHHHHHHhccC---C--ceeehHHHHHHHHHHHHH
Q 025116 136 GDISRGFASAFLLIFFSELGDKTFFIAALLAARNS---A--ATVFAGTFGALAAMTVIS 189 (257)
Q Consensus 136 ~~~~~aFltAFllIFLAElGDKTQLatalLAaRy~---~--~~Vf~Ga~lAL~l~TvLa 189 (257)
+.....+....+++|+.--.|-.=++...++++.+ + .-||.|.+.+.+....+-
T Consensus 410 ~~i~~~l~iili~~FfvTSaDS~s~vl~~~ss~g~~~p~~~~rifWgv~~g~va~~LL~ 468 (539)
T 4ain_A 410 GQIMGIIAMILLGTFFITSADSASTVMGTMSQHGQLEANKWVTAAWGVATAAIGLTLLL 468 (539)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHcCCCCCCCcchhhHHHHHHHHHHHHHHH
Confidence 34456667777888999999999999999998732 2 368888888887776664
No 10
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=7.90 E-value=1.7e+02 Score=19.39 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=16.1
Q ss_pred eehHHHHHHHHHHHHHHHHhchhhh
Q 025116 174 VFAGTFGALAAMTVISVILGRTFHY 198 (257)
Q Consensus 174 Vf~Ga~lAL~l~TvLaVllG~~l~~ 198 (257)
...|.+++++.+|+.+.++-.+++|
T Consensus 5 lL~GIVlGlipvtl~GLfv~Ay~Qy 29 (37)
T 1vf5_G 5 LLDGLVLGLVFATLGGLFYAAYQQY 29 (37)
T ss_dssp ----CHHHHHHHHHHHHTHHHHHHT
T ss_pred hhhhHHHhhHHHHHHHHHHHHHHHH
Confidence 4568888888888888777766543
Done!