Query 025116
Match_columns 257
No_of_seqs 154 out of 1144
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 04:04:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025116.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025116hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90g_ f.23.26.1 (G:) PetG su 14.7 59 0.0043 19.1 2.5 24 174-197 5-28 (30)
2 d1v54d_ f.23.1.1 (D:) Mitochon 12.2 1.4E+02 0.0098 22.9 4.8 39 218-256 80-122 (144)
3 d2yvxa3 f.57.1.1 (A:276-448) M 10.7 2.6E+02 0.019 21.3 6.2 55 174-230 111-169 (173)
4 d1zuea1 g.9.1.1 (A:1-42) Defen 8.5 40 0.0029 21.1 0.3 11 70-80 31-41 (42)
5 d1kqfb2 f.23.22.1 (B:246-290) 8.2 66 0.0048 20.5 1.3 18 215-232 12-29 (45)
6 d1q90m_ f.23.25.1 (M:) PetM su 5.6 2.2E+02 0.016 16.8 2.6 22 175-196 5-26 (34)
7 d2axtj1 f.23.32.1 (J:7-40) Pho 5.5 2.1E+02 0.015 17.0 2.6 18 175-192 6-23 (34)
8 d1dnva_ b.121.5.3 (A:) Densovi 4.9 56 0.0041 29.3 -0.7 35 31-68 69-103 (415)
9 d2mrba_ g.46.1.1 (A:) Metallot 4.7 1.4E+02 0.01 17.3 1.3 24 62-85 5-28 (31)
10 d1iwga8 f.35.1.1 (A:513-566,A: 4.4 5.4E+02 0.039 19.3 5.1 85 160-256 69-156 (222)
No 1
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=14.74 E-value=59 Score=19.12 Aligned_cols=24 Identities=13% Similarity=0.306 Sum_probs=17.8
Q ss_pred eehHHHHHHHHHHHHHHHHhchhh
Q 025116 174 VFAGTFGALAAMTVISVILGRTFH 197 (257)
Q Consensus 174 Vf~Ga~lAL~l~TvLaVllG~~l~ 197 (257)
...|.++|++-+|+.+.++...++
T Consensus 5 ll~GivlGlipiTl~Glfv~AylQ 28 (30)
T d1q90g_ 5 LLCGIVLGLVPVTIAGLFVTAYLQ 28 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHhhHHHHHHHHHHHHHHH
Confidence 356888888888888877766543
No 2
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=12.19 E-value=1.4e+02 Score=22.86 Aligned_cols=39 Identities=15% Similarity=0.111 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHH--hhhc--CCCCCchHHHHHHHHhhhhc
Q 025116 218 AAVCLLVYFGVSTLL--DAAS--TDGLKSEDEQKENFQEMVLE 256 (257)
Q Consensus 218 ~AaiLFL~FGv~tL~--ea~~--~~~~~~eeE~~e~~~e~~~~ 256 (257)
.++++|+.||++..+ ..+. ......++|.+|+..|-+++
T Consensus 80 g~~~~~i~~s~~i~~~~r~~v~p~~P~T~~~Ewqeaq~erm~~ 122 (144)
T d1v54d_ 80 GAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLD 122 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCGGGSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 334455666654333 2222 23566788888888777664
No 3
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=10.65 E-value=2.6e+02 Score=21.27 Aligned_cols=55 Identities=16% Similarity=0.309 Sum_probs=34.4
Q ss_pred eehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchh----HHHHHHHHHHHHHHHH
Q 025116 174 VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPI----DDIAAVCLLVYFGVST 230 (257)
Q Consensus 174 Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~i----v~i~AaiLFL~FGv~t 230 (257)
+.....+++++...++.++|..+..+.+++-.+.....-|. .++.+ ++++||+-+
T Consensus 111 l~~vi~~sl~~~~~ia~~~G~~lPlll~klg~DPA~aS~P~itti~Di~g--~~iyf~iA~ 169 (173)
T d2yvxa3 111 LLPVVGVSLVLIVFFANLVGAMLPFLLRRLGVDPALVSNPLVATLSDVTG--LLIYLSVAR 169 (173)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCGGGSCSTTHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHH--HHHHHHHHH
Confidence 44556688889999999999988777777633322223342 34444 445555543
No 4
>d1zuea1 g.9.1.1 (A:1-42) Defensin-like peptide, DLP {Duckbilled platypus (Ornithorhynchus anatinus), DLP-2 [TaxId: 9258]}
Probab=8.53 E-value=40 Score=21.13 Aligned_cols=11 Identities=55% Similarity=1.035 Sum_probs=8.4
Q ss_pred cccccCCcccc
Q 025116 70 SCENRNDVDCK 80 (257)
Q Consensus 70 ~~~~~~~~~~~ 80 (257)
-|||+|.+-|+
T Consensus 31 ycen~nq~cc~ 41 (42)
T d1zuea1 31 YCENRNQKCCE 41 (42)
T ss_dssp BCSSTTEEEEC
T ss_pred eecCCCccccc
Confidence 47999987764
No 5
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=8.20 E-value=66 Score=20.45 Aligned_cols=18 Identities=6% Similarity=-0.167 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025116 215 DDIAAVCLLVYFGVSTLL 232 (257)
Q Consensus 215 v~i~AaiLFL~FGv~tL~ 232 (257)
.+.++.+.|.+-.+..++
T Consensus 12 ~Kpl~~~~~~~~~~~~~f 29 (45)
T d1kqfb2 12 LKPLAAAGFIATFAGLIF 29 (45)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344454444444433333
No 6
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.56 E-value=2.2e+02 Score=16.82 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=16.8
Q ss_pred ehHHHHHHHHHHHHHHHHhchh
Q 025116 175 FAGTFGALAAMTVISVILGRTF 196 (257)
Q Consensus 175 f~Ga~lAL~l~TvLaVllG~~l 196 (257)
.+|+..-++-||.++..+|-.+
T Consensus 5 iagta~tmig~tl~glaigfvl 26 (34)
T d1q90m_ 5 IAGTALTMVGMTLVGLAIGFVL 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecchhHHHHHHHHHHHHHHHhh
Confidence 4677888888888888888543
No 7
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.55 E-value=2.1e+02 Score=17.03 Aligned_cols=18 Identities=6% Similarity=0.418 Sum_probs=12.8
Q ss_pred ehHHHHHHHHHHHHHHHH
Q 025116 175 FAGTFGALAAMTVISVIL 192 (257)
Q Consensus 175 f~Ga~lAL~l~TvLaVll 192 (257)
++|++.++.+.+++++++
T Consensus 6 lv~tv~G~~vi~~vG~Ff 23 (34)
T d2axtj1 6 IVATVAGMGVIVIVGLFF 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred EeeehhhhhhHhheeeee
Confidence 457777777777777764
No 8
>d1dnva_ b.121.5.3 (A:) Densovirus capsid protein {Galleria mellonella densovirus [TaxId: 37138]}
Probab=4.90 E-value=56 Score=29.27 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=28.2
Q ss_pred cccccCCccccccCCCcccccccCCcchhhhhhhcCCC
Q 025116 31 SKLFPFNSLCKNQTSTSKKLSLRNPYLNFSRELCRDPG 68 (257)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (257)
+.++|.-++|++- +.|.-.||||+.|.--+....-
T Consensus 69 F~lLP~Gs~v~e~---~vkvv~rn~RiAFeTnSS~T~l 103 (415)
T d1dnva_ 69 FDLLPPGSRVVEC---NVKVIFRTNRIAFETSSTVTKQ 103 (415)
T ss_dssp HHTCCTTCBCCCE---EEEEEEEEEEECCCCSCTTSCC
T ss_pred HhhcCCCceEEEE---EEEEEEecCeeEEEecCccccc
Confidence 4489999999888 8999999999999766554333
No 9
>d2mrba_ g.46.1.1 (A:) Metallothionein {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=4.72 E-value=1.4e+02 Score=17.32 Aligned_cols=24 Identities=42% Similarity=0.809 Sum_probs=16.2
Q ss_pred hhhcCCCCcccccCCccccccccc
Q 025116 62 ELCRDPGASCENRNDVDCKNCKMT 85 (257)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~ 85 (257)
+++.--|+||.-.++-.|+.+|-+
T Consensus 5 cscaaagdsc~ca~sctck~ckct 28 (31)
T d2mrba_ 5 CSCAAAGDSCTCANSCTCKACKCT 28 (31)
T ss_dssp CCCCCSSSCCCCSSCCCCSSCCCT
T ss_pred ccccccCCcccccCceeecceeee
Confidence 455566788877777677776654
No 10
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=4.37 E-value=5.4e+02 Score=19.28 Aligned_cols=85 Identities=15% Similarity=0.022 Sum_probs=0.0
Q ss_pred HHHHHHHhccCCceeehHHHHHHHHHHHHHHHHhchhhhhcccCCccccCCCchhHHHHHHHHHHHHHHH---HHHhhhc
Q 025116 160 FIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVS---TLLDAAS 236 (257)
Q Consensus 160 LatalLAaRy~~~~Vf~Ga~lAL~l~TvLaVllG~~l~~I~~~IP~r~~~~~~~iv~i~AaiLFL~FGv~---tL~ea~~ 236 (257)
++-+.|+..++.|..-+- ++.-+..++++++.+-++ .-.|... ...++.++.+..++. .+.+.+.
T Consensus 69 ~i~liL~~~frS~~~~li-v~~~ipl~~~~~~~~l~~----~g~~~~~-------~~~~g~i~l~Gi~v~~~i~~~~~~~ 136 (222)
T d1iwga8 69 VVFLCLAALYESWSIPFS-VMLVVPLGVIGALLAATF----RGLTNDV-------YFQVGLLTTIGLSAKNAILIVEFAK 136 (222)
T ss_dssp HHHHHHHHTTCSSSHHHH-GGGHHHHHHHHHHHHHHH----TTCCBCH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHH----cCCchhh-------hhcccccchhhhhhhHHHHHHHHhc
Q ss_pred CCCCCchHHHHHHHHhhhhc
Q 025116 237 TDGLKSEDEQKENFQEMVLE 256 (257)
Q Consensus 237 ~~~~~~eeE~~e~~~e~~~~ 256 (257)
....+..++.+++..|...+
T Consensus 137 ~~~~~~g~~~~~Ai~~a~~~ 156 (222)
T d1iwga8 137 DLMDKEGKGLIEATLDAVRM 156 (222)
T ss_dssp HHTTSSCCCTTHHHHHHHHT
T ss_pred cccccccCCHHHHHHHHHHH
Done!