BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025117
(257 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CFS|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate
Phosphatase
pdb|2CFT|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate
Phosphatase With Its Substrate
Length = 298
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 121/256 (47%), Gaps = 20/256 (7%)
Query: 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT-VTEEEIXXXXXXXXXYLKS-IDFPKDK 59
L GK +FV+NNS ++R + +F LG + E++ L+ + P D
Sbjct: 49 LARAGKAALFVSNNSRRARPELALRFARLGFGGLRAEQLFSSALCAARLLRQRLPGPPDA 108
Query: 60 --KVYVVGEDGILKELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFN 117
V+V+G +G+ EL AG + G P G V AV+VG+D +F+
Sbjct: 109 PGAVFVLGGEGLRAELRAAGLRLAGDPSAGDGAA-----------PRVRAVLVGYDEHFS 157
Query: 118 YYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKP 177
+ K++ +R +P CL +AT+RD L+D G GS+ A ++ R+ LVVGKP
Sbjct: 158 FAKLREACAHLR-DPECLLVATDRDPWHPLSDGSRTPGTGSLAAAVETASGRQALVVGKP 216
Query: 178 STFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKXXXXXXXXXXXXXXQ----SP 233
S +M + + F I ++ MVGDRL+TDILFG G Q +
Sbjct: 217 SPYMFECITENFSIDPARTLMVGDRLETDILFGHRCGMTTVLTLTGVSRLEEAQAYLAAG 276
Query: 234 NNSIQPDFYTNKISDF 249
+ + P +Y I+D
Sbjct: 277 QHDLVPHYYVESIADL 292
>pdb|2CFR|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate
Phosphatase
Length = 298
Score = 118 bits (295), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 119/256 (46%), Gaps = 20/256 (7%)
Query: 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT-VTEEEIXXXXXXXXXYLKS-IDFPKDK 59
L GK +FV+NNS ++R + +F LG + E++ L+ + P D
Sbjct: 49 LARAGKAALFVSNNSRRARPELALRFARLGFGGLRAEQLFSSALCAARLLRQRLPGPPDA 108
Query: 60 --KVYVVGEDGILKELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFN 117
V+V+G +G+ EL AG + G P G V AV+VG+D +F+
Sbjct: 109 PGAVFVLGGEGLRAELRAAGLRLAGDPSAGDGAA-----------PRVRAVLVGYDEHFS 157
Query: 118 YYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKP 177
+ K++ +R +P CL +AT+RD L+D G GS+ A ++ R+ LVVGKP
Sbjct: 158 FAKLREACAHLR-DPECLLVATDRDPWHPLSDGSRTPGTGSLAAAVETASGRQALVVGKP 216
Query: 178 STFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKXXXXXXXXXXXXXXQ----SP 233
S + + + F I ++ VGDRL+TDILFG G Q +
Sbjct: 217 SPYXFECITENFSIDPARTLXVGDRLETDILFGHRCGXTTVLTLTGVSRLEEAQAYLAAG 276
Query: 234 NNSIQPDFYTNKISDF 249
+ + P +Y I+D
Sbjct: 277 QHDLVPHYYVESIADL 292
>pdb|2OYC|A Chain A, Crystal Structure Of Human Pyridoxal Phosphate Phosphatase
pdb|2P27|A Chain A, Crystal Structure Of Human Pyridoxal Phosphate Phosphatase
With Mg2+ At 1.9 A Resolution
pdb|2P69|A Chain A, Crystal Structure Of Human Pyridoxal Phosphate Phosphatase
With Plp
Length = 306
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 119/256 (46%), Gaps = 20/256 (7%)
Query: 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT-VTEEEIXXXXXXXXXYLKS-IDFPKDK 59
L GK +FV+NNS ++R + +F LG + E++ L+ + P D
Sbjct: 49 LARAGKAALFVSNNSRRARPELALRFARLGFGGLRAEQLFSSALCAARLLRQRLPGPPDA 108
Query: 60 --KVYVVGEDGILKELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFN 117
V+V+G +G+ EL AG + G P G V AV+VG+D +F+
Sbjct: 109 PGAVFVLGGEGLRAELRAAGLRLAGDPSAGDGAA-----------PRVRAVLVGYDEHFS 157
Query: 118 YYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKP 177
+ K++ +R +P CL +AT+RD L+D G GS+ A ++ R+ LVVGKP
Sbjct: 158 FAKLREACAHLR-DPECLLVATDRDPWHPLSDGSRTPGTGSLAAAVETASGRQALVVGKP 216
Query: 178 STFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKXXXXXXXXXXXXXXQ----SP 233
S + + + F I ++ VGDRL+TDILFG G Q +
Sbjct: 217 SPYXFECITENFSIDPARTLXVGDRLETDILFGHRCGXTTVLTLTGVSRLEEAQAYLAAG 276
Query: 234 NNSIQPDFYTNKISDF 249
+ + P +Y I+D
Sbjct: 277 QHDLVPHYYVESIADL 292
>pdb|1ZJJ|A Chain A, Crystal Structure Of Hypothetical Protein Ph1952 From
Pyrococcus Horikoshii Ot3
pdb|1ZJJ|B Chain B, Crystal Structure Of Hypothetical Protein Ph1952 From
Pyrococcus Horikoshii Ot3
Length = 263
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 112/216 (51%), Gaps = 20/216 (9%)
Query: 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIXXXXXXXXXYL-KSIDFPKDKK 60
L+ +G F+TNNSTK+ + Y +K +G+ V+ I Y+ K +D K
Sbjct: 29 LKERGIPFAFLTNNSTKTPEMYREKLLKMGIDVSSSIIITSGLATRLYMSKHLD---PGK 85
Query: 61 VYVVGEDGILKELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYK 120
++V+G +G++KE++ G+ + E + G K+V VVVG D Y K
Sbjct: 86 IFVIGGEGLVKEMQALGWGIV-------TLDEARQG----SWKEVKHVVVGLDPDLTYEK 134
Query: 121 VQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTF 180
++Y TL IR G FI TN DA T + + G GS++ A +T EP+++GKP+
Sbjct: 135 LKYATLAIRN--GATFIGTNPDA-TLPGEEGIYPGAGSIIAALKVATNVEPIIIGKPNEP 191
Query: 181 MMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCK 216
M + + F ++ MVGDRLDTDI F + G K
Sbjct: 192 MYEVVREMF--PGEELWMVGDRLDTDIAFAKKFGMK 225
>pdb|3PDW|A Chain A, Crystal Structure Of Putative P-Nitrophenyl Phosphatase
From Bacillus Subtilis
Length = 266
Score = 100 bits (249), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 99/213 (46%), Gaps = 25/213 (11%)
Query: 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIXXXXXXXXXYLKSIDFPKDKKV 61
L+ +G +FVTNNS+++ KQ K + + TEE++ ++ KD V
Sbjct: 34 LKDRGVPYLFVTNNSSRTPKQVADKLVSFDIPATEEQVFTTSMATAQHIAQ--QKKDASV 91
Query: 62 YVVGEDGILKELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKV 121
YV+GE+GI + +E G + GG+ + VVVG DR Y K
Sbjct: 92 YVIGEEGIRQAIEENGLTF------GGENADF--------------VVVGIDRSITYEKF 131
Query: 122 QYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFM 181
G L IR G FI+TN D + T+ G GS+ ST +P+ +GKP + +
Sbjct: 132 AVGCLAIRN--GARFISTNGD-IAIPTERGLLPGNGSLTSVLTVSTGVQPVFIGKPESII 188
Query: 182 MDYLANKFGIQKSQICMVGDRLDTDILFGQNGG 214
M+ G S+ MVGD TDI+ G N G
Sbjct: 189 MEQAMRVLGTDVSETLMVGDNYATDIMAGINAG 221
>pdb|3QGM|A Chain A, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
pdb|3QGM|B Chain B, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
pdb|3QGM|C Chain C, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
pdb|3QGM|D Chain D, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
Length = 268
Score = 94.0 bits (232), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 120/251 (47%), Gaps = 29/251 (11%)
Query: 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIXXXXXXXXXYLKSIDFPKDKKV 61
L+ GK+++FV+NNST+SR+ ++ + GL V E+EI ++ + P + KV
Sbjct: 36 LKELGKKIIFVSNNSTRSRRILLERLRSFGLEVGEDEILVATYATARFIAR-EKP-NAKV 93
Query: 62 YVVGEDGILKELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNY-YK 120
+ GE+G+++EL LAG + ++++D + +VVG +R N+
Sbjct: 94 FTTGEEGLIEELRLAGLE------------------IVDYD-EAEYLVVGSNRKINFELX 134
Query: 121 VQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREP-LVVGKPST 179
+ C+R G +IATN D + D G G ++GA T REP +VVGKPS
Sbjct: 135 TKALRACLR---GIRYIATNPDRIFPAEDGP-IPGTGXIIGALYWXTGREPDVVVGKPSE 190
Query: 180 FMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKXXXXXXXXXXXXXXQS--PNNSI 237
+ + G+ + +VGD++D D+ G+ G + + +
Sbjct: 191 VIXREALDILGLDAKDVAVVGDQIDVDVAAGKAIGAETVLVLTGVTTRENLDQXIERHGL 250
Query: 238 QPDFYTNKISD 248
+PD+ N + D
Sbjct: 251 KPDYVFNSLKD 261
>pdb|1YV9|A Chain A, Crystal Structure Of A Had-Like Phosphatase From
Enterococcus Faecalis V583
pdb|1YV9|B Chain B, Crystal Structure Of A Had-Like Phosphatase From
Enterococcus Faecalis V583
Length = 264
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 103/214 (48%), Gaps = 27/214 (12%)
Query: 2 LRSKGKRLVFVTNNSTKSRKQYGKKFET-LGLTVTEEEIXXXXXXXXXYLKSIDFPKDKK 60
L+ K +FVTNN+TKS + ++ + V + Y+K + + KK
Sbjct: 33 LQEKDLPFLFVTNNTTKSPETVAQRLANEFDIHVPASLVYTATLATIDYMKEAN--RGKK 90
Query: 61 VYVVGEDGILKELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYK 120
V+V+GE G++ + AGF++ E P + VVVG D +Y K
Sbjct: 91 VFVIGEAGLIDLILEAGFEW----------DETNPDY----------VVVGLDTELSYEK 130
Query: 121 VQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTF 180
V TL I++ G LFI TN D T+ G GS+V +TQ +P+ +GKP
Sbjct: 131 VVLATLAIQK--GALFIGTNPDKNIP-TERGLLPGAGSVVTFVETATQTKPVYIGKPKAI 187
Query: 181 MMDYLANKFGIQKSQICMVGDRLDTDILFG-QNG 213
+M+ G++K Q+ MVGD +TDI G QNG
Sbjct: 188 IMERAIAHLGVEKEQVIMVGDNYETDIQSGIQNG 221
>pdb|3EPR|A Chain A, Crystal Structure Of Putative Had Superfamily Hydrolase
From Streptococcus Agalactiae
Length = 264
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 104/248 (41%), Gaps = 27/248 (10%)
Query: 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIXXXXXXXXXYLKSIDFPKDKKV 61
L+ KG + VTNN+T++ + + + E I Y+ D + K
Sbjct: 33 LQEKGIPYMLVTNNTTRTPESVQEMLRGFNVETPLETIYTATMATVDYMN--DMNRGKTA 90
Query: 62 YVVGEDGILKELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKV 121
YV+GE+G+ K + AG+ +E K+ VVVG D Y K+
Sbjct: 91 YVIGEEGLKKAIADAGY--------------------VEDTKNPAYVVVGLDWNVTYDKL 130
Query: 122 QYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFM 181
TL I+ G LFI TN D + T+ G GS+ +T+ +P+ +GKP+ +
Sbjct: 131 ATATLAIQN--GALFIGTNPD-LNIPTERGLLPGAGSLNALLEAATRIKPVFIGKPNAII 187
Query: 182 MDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKXXXXXXXXXXXXXXQSPNNSIQPDF 241
M+ I ++Q MVGD TDI+ G N + P+ IQP +
Sbjct: 188 MNKALEILNIPRNQAVMVGDNYLTDIMAGINNDID--TLLVTTGFTTVEEVPDLPIQPSY 245
Query: 242 YTNKISDF 249
+ ++
Sbjct: 246 VLASLDEW 253
>pdb|1VJR|A Chain A, Crystal Structure Of 4-nitrophenylphosphatase (tm1742)
From Thermotoga Maritima At 2.40 A Resolution
Length = 271
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 102/216 (47%), Gaps = 30/216 (13%)
Query: 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIXXXXXXXXXYLKSIDFPKDKKV 61
L+ K KR VF TNNS+ + Y +K G +D P D V
Sbjct: 45 LKEKNKRFVFFTNNSSLGAQDYVRKLRNXG---------------------VDVPDDAVV 83
Query: 62 YV--VGEDGILKELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYY 119
+ + LK LG P+ KK+ G +++ +++ VV+GFD+ Y
Sbjct: 84 TSGEITAEHXLKRFGRCRIFLLGTPQ--LKKVFEAYGHVID-EENPDFVVLGFDKTLTYE 140
Query: 120 KVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREP-LVVGKPS 178
+++ + +R+ G +IAT+ D + + GS+ A ST R+P L+ GKP+
Sbjct: 141 RLKKACILLRK--GKFYIATHPD-INCPSKEGPVPDAGSIXAAIEASTGRKPDLIAGKPN 197
Query: 179 TFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGG 214
++D ++ KFG+ K + VGDRL TD+ G+N G
Sbjct: 198 PLVVDVISEKFGVPKERXAXVGDRLYTDVKLGKNAG 233
>pdb|1WVI|A Chain A, Crystal Structure Of Putative Phosphatase From
Streptococcus Mutans Ua159
pdb|1WVI|B Chain B, Crystal Structure Of Putative Phosphatase From
Streptococcus Mutans Ua159
pdb|1WVI|C Chain C, Crystal Structure Of Putative Phosphatase From
Streptococcus Mutans Ua159
pdb|1WVI|D Chain D, Crystal Structure Of Putative Phosphatase From
Streptococcus Mutans Ua159
Length = 257
Score = 80.5 bits (197), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 105/241 (43%), Gaps = 28/241 (11%)
Query: 10 VFVTNNSTKSRKQYGKKFET-LGLTVTEEEIXXXXXXXXXYLKSIDFPKDKKVYVVGEDG 68
+ VTNN+T++ + + T + E I Y+ D + K YV+GE G
Sbjct: 39 ILVTNNTTRTPEMVQEMLATSFNIKTPLETIYTATLATIDYMN--DMKRGKTAYVIGETG 96
Query: 69 ILKELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKVQYGTLCI 128
+ K + AG++ E ++ VVVG D Y K+ TL I
Sbjct: 97 LKKAVAEAGYR--------------------EDSENPAYVVVGLDTNLTYEKLTLATLAI 136
Query: 129 RENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANK 188
++ G +FI TN D + T+ G G+++ +T+ +P+++GKP +M+ ++
Sbjct: 137 QK--GAVFIGTNPD-LNIPTERGLLPGAGAILFLLEKATRVKPIIIGKPEAVIMNKALDR 193
Query: 189 FGIQKSQICMVGDRLDTDILFGQNGGCKXXXXXXXXXXXXXXQSPNNSIQPDFYTNKISD 248
G+++ + MVGD TDI G + P IQPDF + +++
Sbjct: 194 LGVKRHEAIMVGDNYLTDITAGIKNDI--ATLLVTTGFTKPEEVPALPIQPDFVLSSLAE 251
Query: 249 F 249
+
Sbjct: 252 W 252
>pdb|1PW5|A Chain A, Putative Nagd Protein
Length = 253
Score = 80.5 bits (197), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 102/214 (47%), Gaps = 26/214 (12%)
Query: 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIXXXXXXXXXYLKSIDFPKDKKV 61
L+ K KR VF TNNS+ + Y +K G+ V ++ +
Sbjct: 33 LKEKNKRFVFFTNNSSLGAQDYVRKLRNXGVDVPDDAVVTSGE----------------- 75
Query: 62 YVVGEDGILKELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKV 121
+ + LK LG P+ KK+ G +++ +++ VV+GFD+ Y ++
Sbjct: 76 --ITAEHXLKRFGRCRIFLLGTPQ--LKKVFEAYGHVID-EENPDFVVLGFDKTLTYERL 130
Query: 122 QYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREP-LVVGKPSTF 180
+ + +R+ G +IAT+ D + + GS+ A ST R+P L+ GKP+
Sbjct: 131 KKACILLRK--GKFYIATHPD-INCPSKEGPVPDAGSIXAAIEASTGRKPDLIAGKPNPL 187
Query: 181 MMDYLANKFGIQKSQICMVGDRLDTDILFGQNGG 214
++D ++ KFG+ K + VGDRL TD+ G+N G
Sbjct: 188 VVDVISEKFGVPKERXAXVGDRLYTDVKLGKNAG 221
>pdb|1YS9|A Chain A, Crystal Sructure Of Phosphatase Spy1043 From Streptococcus
Pyogenes
Length = 254
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 105/250 (42%), Gaps = 30/250 (12%)
Query: 2 LRSKGKRLVFVTNNSTKSRKQYGKKFET-LGLTVTEEEIXXXXXXXXXYLKSIDFPKDKK 60
L+ +G + VTNN+T++ + + + E I Y+ D + K
Sbjct: 31 LQERGIPYLLVTNNTTRTPEMVQSMLANQFHVETSIETIYTATMATVDYMN--DMNRGKT 88
Query: 61 VYVVGEDGILKELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYK 120
YV+GE G+ + AG+ +E ++ VVVG D Y
Sbjct: 89 AYVIGETGLKSAIAAAGY--------------------VEELENPAYVVVGLDSQVTYEM 128
Query: 121 VQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTF 180
+ TL I++ G LFI TN D + T+ G G++ +T+ +P+ +GKP+
Sbjct: 129 LAIATLAIQK--GALFIGTNPD-LNIPTERGLMPGAGALNALLEAATRVKPVFIGKPNAI 185
Query: 181 MMDYLANKFGIQKSQICMVGDRLDTDILFG-QNGGCKXXXXXXXXXXXXXXQSPNNSIQP 239
+M+ GIQ+S+ MVGD TDI+ G QN + P IQP
Sbjct: 186 IMNKSLEVLGIQRSEAVMVGDNYLTDIMAGIQN---DIATILVTTGFTRPEEVPTLPIQP 242
Query: 240 DFYTNKISDF 249
D + + ++
Sbjct: 243 DHVLSSLDEW 252
>pdb|1YDF|A Chain A, Crystal Structure Of A Had-like Phosphatase From
Streptococcus Pneumoniae
Length = 257
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 100/215 (46%), Gaps = 26/215 (12%)
Query: 2 LRSKGKRLVFVTNNSTKSRKQYGKKF-ETLGLTVTEEEIXXXXXXXXXYLKSIDFPKDKK 60
L+ + +FVTNN+T++ + + + + + Y+ D +K
Sbjct: 31 LQKRDIPYLFVTNNTTRTPESVKEMLAQNFNIDTPLSTVYTATLATIDYMN--DLGLEKT 88
Query: 61 VYVVGEDGILKELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYK 120
VYVVGE G+ + ++ AG+ ED + KP + VVVG D +Y K
Sbjct: 89 VYVVGEAGLKEAIKAAGYV-----ED-----KEKPAY----------VVVGLDWQVDYEK 128
Query: 121 VQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTF 180
TL I++ G FI TN D + T+ G GS++ +T+ +P+ +GKP+
Sbjct: 129 FATATLAIQK--GAHFIGTNPD-LNIPTERGLLPGAGSLITLLEVATRVKPVYIGKPNAI 185
Query: 181 MMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGC 215
+MD G+++ ++ MVGD TDI G + G
Sbjct: 186 IMDKAVEHLGLEREELIMVGDNYLTDIRAGIDNGI 220
>pdb|2C4N|A Chain A, Nagd From E.Coli K-12 Strain
Length = 250
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 91/215 (42%), Gaps = 29/215 (13%)
Query: 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIXXXXXXXXXYLKSIDFPKDKKV 61
+ KG LV +TN +++ + +F T G+ V + +L+ + KK
Sbjct: 31 IMDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTSAMATADFLRR---QEGKKA 87
Query: 62 YVVGEDGILKELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKV 121
YVVGE ++ EL AGF ++ P F V+VG R +N+ +
Sbjct: 88 YVVGEGALIHELYKAGFTI----------TDVNPDF----------VIVGETRSYNWDMM 127
Query: 122 QYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFM 181
+ G FIATN D TH + G++ + R+P VGKPS ++
Sbjct: 128 HKAAYFVAN--GARFIATNPD--TH--GRGFYPACGALCAGIEKISGRKPFYVGKPSPWI 181
Query: 182 MDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCK 216
+ NK + +VGD L TDIL G G +
Sbjct: 182 IRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLE 216
>pdb|2HX1|A Chain A, Crystal Structure Of Possible Sugar Phosphatase, Had
Superfamily (Zp_00311070.1) From Cytophaga Hutchinsonii
Atcc 33406 At 2.10 A Resolution
pdb|2HX1|B Chain B, Crystal Structure Of Possible Sugar Phosphatase, Had
Superfamily (Zp_00311070.1) From Cytophaga Hutchinsonii
Atcc 33406 At 2.10 A Resolution
pdb|2HX1|C Chain C, Crystal Structure Of Possible Sugar Phosphatase, Had
Superfamily (Zp_00311070.1) From Cytophaga Hutchinsonii
Atcc 33406 At 2.10 A Resolution
pdb|2HX1|D Chain D, Crystal Structure Of Possible Sugar Phosphatase, Had
Superfamily (Zp_00311070.1) From Cytophaga Hutchinsonii
Atcc 33406 At 2.10 A Resolution
Length = 284
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 91/219 (41%), Gaps = 20/219 (9%)
Query: 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGL-TVTEEEIXXXXXXXXXYLKSIDFPKDKK 60
L+++G+ VTN++++S +Q + LGL ++T ++I Y+ D K
Sbjct: 42 LKAQGQDYYIVTNDASRSPEQLADSYHKLGLFSITADKIISSGXITKEYI-------DLK 94
Query: 61 VYVVGEDGILKELELA-GFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYY 119
V + GI+ L A YL DG K + + + +V A+V+ D FN++
Sbjct: 95 V----DGGIVAYLGTANSANYL--VSDGIKXLPVS-AIDDSNIGEVNALVLLDDEGFNWF 147
Query: 120 KVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPST 179
T+ + I N D LT G + R + GKP +
Sbjct: 148 HDLNKTVNLLRKRTIPAIVANTDNTYPLTKTDVAIAIGGVATXIESILGRRFIRFGKPDS 207
Query: 180 ----FMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGG 214
F D L K I K +I VGD L TDIL G G
Sbjct: 208 QXFXFAYDXLRQKXEISKREILXVGDTLHTDILGGNKFG 246
>pdb|2W4M|A Chain A, The Crystal Structure Of Human N-Acetylneuraminic Acid
Phosphatase, Nanp
Length = 270
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 135 LFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKS 194
L + TN D T + A VG QRE KP+ + Y N G+Q
Sbjct: 149 LLLLTNGDRQTQREKIEACACQSYFDAVVVGGEQREE----KPAPSIFYYCCNLLGVQPG 204
Query: 195 QICMVGDRLDTDILFGQNGGCK 216
MVGD L+TDI G N G K
Sbjct: 205 DCVMVGDTLETDIQGGLNAGLK 226
>pdb|2GFH|A Chain A, Crystal Structure Of A N-acetylneuraminic Acid Phosphatase
(nanp) From Mus Musculus At 1.90 A Resolution
Length = 260
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 135 LFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKS 194
L + TN D T + A +G Q+E KP+ + + + G+Q
Sbjct: 139 LLLLTNGDRQTQREKIEACACQSYFDAIVIGGEQKEE----KPAPSIFYHCCDLLGVQPG 194
Query: 195 QICMVGDRLDTDILFGQNGGCK 216
MVGD L+TDI G N G K
Sbjct: 195 DCVMVGDTLETDIQGGLNAGLK 216
>pdb|3HLT|A Chain A, The Crystal Structure Of Human Haloacid Dehalogenase-Like
Hydrolase Domain Containing 2 (Hdhd2)
pdb|3HLT|C Chain C, The Crystal Structure Of Human Haloacid Dehalogenase-Like
Hydrolase Domain Containing 2 (Hdhd2)
Length = 266
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 80/215 (37%), Gaps = 34/215 (15%)
Query: 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIXXXXXXXXXYLKSIDFPKDKKV 61
LR + FVTN + +S++ ++ L ++E+EI L+ K +
Sbjct: 35 LRGASVIIRFVTNTTKESKQDLLERLRKLEFDISEDEIFTSLTAARSLLER----KQVRP 90
Query: 62 YVVGEDGILKELELAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGF-DRYFNYYK 120
++ +D L P F D AVV+G +F+Y
Sbjct: 91 MLLVDDRAL------------------------PDFKGIQTSDPNAVVMGLAPEHFHYQI 126
Query: 121 VQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPS-T 179
+ + + G IA ++ D G G V A +T + VVGKP T
Sbjct: 127 LNQAFRLLLD--GAPLIAIHKARYYKRKDGLAL-GPGPFVTALEYATDTKATVVGKPEKT 183
Query: 180 FMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGG 214
F ++ L G + + M+GD D+ Q+ G
Sbjct: 184 FFLEALRGT-GCEPEEAVMIGDDCRDDVGGAQDVG 217
>pdb|3IB6|A Chain A, Crystal Structure Of An Uncharacterized Protein From
Listeria Monocytogenes Serotype 4b
pdb|3IB6|B Chain B, Crystal Structure Of An Uncharacterized Protein From
Listeria Monocytogenes Serotype 4b
pdb|3IB6|C Chain C, Crystal Structure Of An Uncharacterized Protein From
Listeria Monocytogenes Serotype 4b
pdb|3IB6|D Chain D, Crystal Structure Of An Uncharacterized Protein From
Listeria Monocytogenes Serotype 4b
Length = 189
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 163 FVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGC 215
+ +++ +P + KP + D+ N I K++ MVG+ ++DI+ G
Sbjct: 84 YASNSELQPGKMEKPDKTIFDFTLNALQIDKTEAVMVGNTFESDIIGANRAGI 136
>pdb|2HSZ|A Chain A, Crystal Structure Of A Predicted Phosphoglycolate
Phosphatase (hs_0176) From Haemophilus Somnus 129pt At
1.90 A Resolution
pdb|2HSZ|B Chain B, Crystal Structure Of A Predicted Phosphoglycolate
Phosphatase (hs_0176) From Haemophilus Somnus 129pt At
1.90 A Resolution
Length = 243
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 168 QREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGC 215
Q P + P+ F YL KFG+ QI VGD DI + GC
Sbjct: 164 QSLPEIKPHPAPFY--YLCGKFGLYPKQILFVGDS-QNDIFAAHSAGC 208
>pdb|2X4D|A Chain A, Crystal Structure Of Human Phospholysine Phosphohistidine
Inorganic Pyrophosphate Phosphatase Lhpp
pdb|2X4D|B Chain B, Crystal Structure Of Human Phospholysine Phosphohistidine
Inorganic Pyrophosphate Phosphatase Lhpp
Length = 271
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIXXXXXXXXXYLKSIDFPKDKKV 61
L+ ++ F TN S SR + + + LG ++E+E+ LK + +
Sbjct: 44 LKRSRLKVRFCTNESAASRAELVGQLQRLGFDISEQEVTAPAPAACQILKE----RGLRP 99
Query: 62 YVVGEDGILKELE 74
Y++ DG+ E +
Sbjct: 100 YLLIHDGVRSEFD 112
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Query: 173 VVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKXXXXXXXXXXXXXXQS 232
VVGKPS G++ Q M+GD + D+ Q G +
Sbjct: 187 VVGKPSPEFFKSALQAIGVEAHQAVMIGDDIVGDVGGAQRCGMRALQVRTGKFRPSDEHH 246
Query: 233 PNNSIQPDFYTNKISDFLSL 252
P ++ D Y + +++ + L
Sbjct: 247 PE--VKADGYVDNLAEAVDL 264
>pdb|2GO7|A Chain A, Crystal Structure Of A Hydrolase From Haloacid
Dehalogenase-Like Family (Sp_2064) From Streptococcus
Pneumoniae Tigr4 At 2.10 A Resolution
pdb|2GO7|B Chain B, Crystal Structure Of A Hydrolase From Haloacid
Dehalogenase-Like Family (Sp_2064) From Streptococcus
Pneumoniae Tigr4 At 2.10 A Resolution
pdb|2GO7|C Chain C, Crystal Structure Of A Hydrolase From Haloacid
Dehalogenase-Like Family (Sp_2064) From Streptococcus
Pneumoniae Tigr4 At 2.10 A Resolution
pdb|2GO7|D Chain D, Crystal Structure Of A Hydrolase From Haloacid
Dehalogenase-Like Family (Sp_2064) From Streptococcus
Pneumoniae Tigr4 At 2.10 A Resolution
Length = 207
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 174 VGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCK 216
V KPS YL +K+ + +GDR D+ F QN G +
Sbjct: 138 VRKPSPEAATYLLDKYQLNSDNTYYIGDRT-LDVEFAQNSGIQ 179
>pdb|3Q3Q|A Chain A, Crystal Structure Of Spap: An Novel Alkaline Phosphatase
From Bacterium Sphingomonas Sp. Strain Bsar-1
Length = 565
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 183 DYLANKFGIQKSQICMVGDRLDTDI 207
DY+ + FG + ++ C+ DRLDT++
Sbjct: 300 DYVGHTFGTEGTESCIQVDRLDTEL 324
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,450,638
Number of Sequences: 62578
Number of extensions: 310956
Number of successful extensions: 577
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 27
length of query: 257
length of database: 14,973,337
effective HSP length: 97
effective length of query: 160
effective length of database: 8,903,271
effective search space: 1424523360
effective search space used: 1424523360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)