Query 025117
Match_columns 257
No_of_seqs 273 out of 2427
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 02:51:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025117.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025117hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2882 p-Nitrophenyl phosphat 100.0 6.2E-53 1.3E-57 351.0 23.1 253 1-255 49-305 (306)
2 COG0647 NagD Predicted sugar p 100.0 2.1E-48 4.5E-53 327.2 24.2 233 1-256 35-268 (269)
3 PLN02645 phosphoglycolate phos 100.0 1.4E-45 3E-50 321.3 29.0 257 1-257 55-311 (311)
4 TIGR01452 PGP_euk phosphoglyco 100.0 1.9E-44 4E-49 310.0 27.0 247 1-249 29-279 (279)
5 PRK10444 UMP phosphatase; Prov 100.0 5.6E-44 1.2E-48 301.1 26.1 218 1-249 28-245 (248)
6 TIGR01457 HAD-SF-IIA-hyp2 HAD- 100.0 1.9E-42 4.1E-47 292.7 26.1 222 1-249 28-249 (249)
7 TIGR01458 HAD-SF-IIA-hyp3 HAD- 100.0 2.4E-40 5.3E-45 281.0 25.0 224 1-255 32-256 (257)
8 KOG3040 Predicted sugar phosph 100.0 2E-39 4.3E-44 255.5 16.1 224 1-255 34-258 (262)
9 TIGR01456 CECR5 HAD-superfamil 100.0 3.9E-38 8.5E-43 275.5 22.1 245 2-253 28-320 (321)
10 TIGR01460 HAD-SF-IIA Haloacid 100.0 4.1E-37 8.9E-42 258.2 23.2 209 2-223 26-236 (236)
11 TIGR01459 HAD-SF-IIA-hyp4 HAD- 100.0 6.7E-30 1.5E-34 215.4 20.8 199 1-222 35-242 (242)
12 KOG1618 Predicted phosphatase 99.9 1.4E-21 3.1E-26 163.6 10.9 217 6-226 71-345 (389)
13 PF13242 Hydrolase_like: HAD-h 99.8 4.4E-20 9.5E-25 127.5 7.5 74 174-249 2-75 (75)
14 PF13344 Hydrolase_6: Haloacid 99.8 4E-19 8.7E-24 129.5 8.8 77 1-79 25-101 (101)
15 COG0546 Gph Predicted phosphat 99.8 1.6E-18 3.5E-23 144.0 7.8 131 116-255 89-219 (220)
16 TIGR01454 AHBA_synth_RP 3-amin 99.7 7.8E-18 1.7E-22 138.3 7.8 130 116-254 75-204 (205)
17 PRK06769 hypothetical protein; 99.7 2.8E-17 6E-22 131.6 9.5 135 116-254 28-172 (173)
18 PRK13288 pyrophosphatase PpaX; 99.7 1.3E-17 2.8E-22 137.9 7.2 130 117-255 83-212 (214)
19 PRK10748 flavin mononucleotide 99.7 6.3E-17 1.4E-21 136.1 10.2 126 116-253 113-238 (238)
20 PLN02770 haloacid dehalogenase 99.7 2.5E-17 5.5E-22 139.3 7.3 124 116-249 108-231 (248)
21 PRK13226 phosphoglycolate phos 99.7 2.5E-17 5.4E-22 137.7 6.8 128 117-253 96-224 (229)
22 TIGR01422 phosphonatase phosph 99.7 1.8E-17 3.9E-22 140.5 6.1 129 116-253 99-252 (253)
23 TIGR01449 PGP_bact 2-phosphogl 99.7 2.7E-17 5.8E-22 135.6 6.4 129 116-253 85-213 (213)
24 COG1011 Predicted hydrolase (H 99.7 9.7E-17 2.1E-21 133.6 9.3 131 115-255 98-228 (229)
25 TIGR00213 GmhB_yaeD D,D-heptos 99.7 3E-16 6.5E-21 126.0 11.5 129 116-250 26-175 (176)
26 TIGR02253 CTE7 HAD superfamily 99.7 5.7E-17 1.2E-21 134.5 6.6 127 116-249 94-220 (221)
27 TIGR03351 PhnX-like phosphonat 99.7 6.6E-17 1.4E-21 134.1 6.4 129 116-253 87-219 (220)
28 PRK09449 dUMP phosphatase; Pro 99.7 1.4E-16 3E-21 132.6 7.7 128 116-254 95-223 (224)
29 TIGR02254 YjjG/YfnB HAD superf 99.7 1.3E-16 2.8E-21 132.4 7.2 126 117-253 98-224 (224)
30 PLN03243 haloacid dehalogenase 99.7 2E-16 4.4E-21 134.5 7.6 125 117-253 110-234 (260)
31 PRK13478 phosphonoacetaldehyde 99.6 1.9E-16 4E-21 135.4 6.6 131 116-255 101-256 (267)
32 PRK13223 phosphoglycolate phos 99.6 4.9E-16 1.1E-20 133.1 7.4 130 116-254 101-230 (272)
33 PRK13222 phosphoglycolate phos 99.6 1E-15 2.2E-20 127.3 8.0 133 116-257 93-225 (226)
34 PLN02575 haloacid dehalogenase 99.6 1.1E-15 2.3E-20 135.2 8.5 123 116-250 216-338 (381)
35 PRK08942 D,D-heptose 1,7-bisph 99.6 1.2E-15 2.6E-20 123.0 7.9 132 116-255 29-178 (181)
36 PLN02811 hydrolase 99.6 7.4E-16 1.6E-20 128.0 5.0 127 116-250 78-207 (220)
37 PRK10826 2-deoxyglucose-6-phos 99.6 1.1E-15 2.5E-20 127.0 5.9 127 116-252 92-218 (222)
38 PRK11587 putative phosphatase; 99.6 1.8E-15 3.9E-20 125.5 5.3 122 116-250 83-204 (218)
39 KOG3085 Predicted hydrolase (H 99.6 4.3E-15 9.3E-20 122.7 7.3 106 119-230 116-222 (237)
40 TIGR01668 YqeG_hyp_ppase HAD s 99.6 2.9E-14 6.4E-19 113.8 11.4 102 116-230 43-145 (170)
41 PRK14988 GMP/IMP nucleotidase; 99.6 2.4E-15 5.2E-20 125.3 4.5 107 116-227 93-200 (224)
42 PRK13225 phosphoglycolate phos 99.6 1E-14 2.2E-19 124.8 7.9 129 116-256 142-270 (273)
43 PLN02779 haloacid dehalogenase 99.5 7.7E-15 1.7E-19 126.6 6.6 126 116-250 144-269 (286)
44 PLN02940 riboflavin kinase 99.5 6.9E-15 1.5E-19 131.6 6.3 124 116-250 93-217 (382)
45 PRK09456 ?-D-glucose-1-phospha 99.5 1.2E-14 2.5E-19 119.0 6.5 110 117-230 85-194 (199)
46 TIGR01428 HAD_type_II 2-haloal 99.5 1.2E-14 2.6E-19 118.6 6.1 104 116-224 92-195 (198)
47 PRK10563 6-phosphogluconate ph 99.5 6.9E-15 1.5E-19 122.1 2.8 124 117-254 89-213 (221)
48 TIGR02252 DREG-2 REG-2-like, H 99.5 2E-14 4.3E-19 117.8 4.6 99 116-219 105-203 (203)
49 PRK06698 bifunctional 5'-methy 99.5 8.4E-14 1.8E-18 127.8 8.1 126 116-255 330-455 (459)
50 TIGR01656 Histidinol-ppas hist 99.5 4.1E-14 8.9E-19 110.3 3.9 106 116-223 27-147 (147)
51 COG2179 Predicted hydrolase of 99.4 3.4E-13 7.5E-18 104.0 8.2 100 109-222 39-139 (175)
52 TIGR02247 HAD-1A3-hyp Epoxide 99.4 1E-13 2.2E-18 114.2 4.9 110 116-229 94-204 (211)
53 PLN02919 haloacid dehalogenase 99.4 2.6E-13 5.7E-18 134.9 7.1 123 117-249 162-285 (1057)
54 TIGR01990 bPGM beta-phosphoglu 99.4 1.7E-13 3.7E-18 110.4 4.3 99 116-221 87-185 (185)
55 TIGR01509 HAD-SF-IA-v3 haloaci 99.4 2.5E-13 5.3E-18 109.0 4.9 98 117-220 86-183 (183)
56 TIGR01993 Pyr-5-nucltdase pyri 99.4 2.5E-13 5.5E-18 109.6 4.6 100 116-220 84-184 (184)
57 COG0637 Predicted phosphatase/ 99.4 6.5E-13 1.4E-17 110.4 7.0 130 117-255 87-218 (221)
58 PF13419 HAD_2: Haloacid dehal 99.4 1.1E-13 2.3E-18 109.7 1.8 99 117-220 78-176 (176)
59 PHA02530 pseT polynucleotide k 99.4 8.1E-12 1.8E-16 108.5 13.5 107 116-224 187-299 (300)
60 TIGR01261 hisB_Nterm histidino 99.4 2.6E-13 5.7E-18 107.2 3.2 110 116-228 29-154 (161)
61 PRK10725 fructose-1-P/6-phosph 99.4 5.8E-13 1.3E-17 107.6 4.3 94 122-221 93-186 (188)
62 TIGR01691 enolase-ppase 2,3-di 99.3 1.5E-12 3.3E-17 107.8 6.7 103 116-225 95-200 (220)
63 PHA02597 30.2 hypothetical pro 99.3 1.3E-12 2.9E-17 106.5 5.7 120 116-251 74-196 (197)
64 TIGR02009 PGMB-YQAB-SF beta-ph 99.3 6.7E-13 1.5E-17 106.9 3.5 98 116-220 88-185 (185)
65 TIGR01662 HAD-SF-IIIA HAD-supe 99.3 9.7E-13 2.1E-17 100.5 3.6 99 116-221 25-131 (132)
66 TIGR01685 MDP-1 magnesium-depe 99.3 1.9E-12 4.2E-17 103.1 3.7 109 115-228 44-164 (174)
67 TIGR01664 DNA-3'-Pase DNA 3'-p 99.2 8.8E-12 1.9E-16 99.0 3.2 98 117-219 43-160 (166)
68 PF09419 PGP_phosphatase: Mito 99.1 4.6E-10 9.9E-15 88.5 10.8 113 103-224 39-167 (168)
69 COG0241 HisB Histidinol phosph 99.1 3.2E-10 7E-15 90.2 8.7 132 116-253 31-176 (181)
70 PRK05446 imidazole glycerol-ph 99.1 9.9E-10 2.1E-14 96.8 11.5 112 115-229 29-156 (354)
71 TIGR01493 HAD-SF-IA-v2 Haloaci 99.1 3.9E-11 8.5E-16 95.8 1.9 74 135-213 102-175 (175)
72 TIGR01549 HAD-SF-IA-v1 haloaci 99.0 4.2E-10 9.2E-15 87.9 5.1 88 119-214 67-154 (154)
73 TIGR01548 HAD-SF-IA-hyp1 haloa 99.0 3E-10 6.4E-15 92.7 4.0 86 122-213 112-197 (197)
74 PLN02954 phosphoserine phospha 98.9 2E-09 4.3E-14 89.4 6.4 128 117-253 85-223 (224)
75 TIGR00338 serB phosphoserine p 98.9 6.5E-10 1.4E-14 92.0 3.2 125 117-253 86-219 (219)
76 KOG3109 Haloacid dehalogenase- 98.9 2.2E-09 4.7E-14 86.5 5.3 101 120-224 104-208 (244)
77 TIGR01672 AphA HAD superfamily 98.9 4.4E-09 9.6E-14 88.0 7.1 103 115-228 113-218 (237)
78 TIGR01670 YrbI-phosphatas 3-de 98.9 2.2E-09 4.8E-14 84.2 4.5 101 124-247 36-136 (154)
79 cd01427 HAD_like Haloacid deha 98.8 5.3E-09 1.2E-13 78.9 5.7 103 116-220 24-139 (139)
80 KOG2914 Predicted haloacid-hal 98.8 9.6E-09 2.1E-13 84.7 6.3 121 119-249 95-218 (222)
81 PRK09484 3-deoxy-D-manno-octul 98.7 2.7E-08 5.8E-13 80.3 5.8 108 123-254 55-169 (183)
82 PRK11009 aphA acid phosphatase 98.7 5.6E-08 1.2E-12 81.3 7.0 101 115-228 113-218 (237)
83 TIGR02726 phenyl_P_delta pheny 98.7 1.5E-08 3.3E-13 80.5 3.2 83 123-219 41-123 (169)
84 TIGR01681 HAD-SF-IIIC HAD-supe 98.7 6.8E-08 1.5E-12 73.4 6.5 88 116-212 29-126 (128)
85 PRK09552 mtnX 2-hydroxy-3-keto 98.6 2.9E-08 6.4E-13 82.3 3.5 128 116-255 74-214 (219)
86 PRK13582 thrH phosphoserine ph 98.6 7.3E-08 1.6E-12 78.8 5.2 127 117-255 69-197 (205)
87 PTZ00445 p36-lilke protein; Pr 98.5 9.3E-07 2E-11 71.7 9.7 51 172-223 153-207 (219)
88 smart00577 CPDc catalytic doma 98.5 1.3E-08 2.9E-13 79.2 -1.3 91 117-216 46-137 (148)
89 TIGR01686 FkbH FkbH-like domai 98.5 2.7E-07 5.8E-12 81.0 6.3 90 117-216 32-125 (320)
90 KOG2961 Predicted hydrolase (H 98.4 2E-06 4.4E-11 65.6 9.4 119 104-228 42-174 (190)
91 PRK11133 serB phosphoserine ph 98.4 4.4E-06 9.5E-11 73.2 11.9 128 116-255 181-317 (322)
92 TIGR01491 HAD-SF-IB-PSPlk HAD- 98.4 1.2E-07 2.6E-12 77.1 1.9 107 116-224 80-193 (201)
93 TIGR03333 salvage_mtnX 2-hydro 98.4 2.1E-07 4.5E-12 76.9 2.7 128 116-255 70-210 (214)
94 TIGR02244 HAD-IG-Ncltidse HAD 98.4 2.5E-07 5.4E-12 81.2 3.0 105 117-223 185-325 (343)
95 TIGR01663 PNK-3'Pase polynucle 98.2 9.3E-07 2E-11 81.9 3.4 93 117-215 198-305 (526)
96 PF00702 Hydrolase: haloacid d 98.2 4.8E-07 1E-11 74.1 1.4 89 115-214 126-215 (215)
97 PF08645 PNK3P: Polynucleotide 98.0 7.5E-06 1.6E-10 64.5 5.0 98 117-217 30-152 (159)
98 TIGR01489 DKMTPPase-SF 2,3-dik 97.9 4.7E-06 1E-10 66.9 2.2 95 117-216 73-184 (188)
99 TIGR01512 ATPase-IB2_Cd heavy 97.8 7.5E-05 1.6E-09 70.1 8.3 116 115-254 361-479 (536)
100 TIGR00685 T6PP trehalose-phosp 97.8 9E-05 1.9E-09 62.5 7.2 73 173-256 159-242 (244)
101 TIGR01525 ATPase-IB_hvy heavy 97.7 5.4E-05 1.2E-09 71.4 5.9 115 115-254 383-500 (556)
102 TIGR01490 HAD-SF-IB-hyp1 HAD-s 97.7 2.7E-05 5.9E-10 63.4 3.3 100 117-218 88-195 (202)
103 TIGR02137 HSK-PSP phosphoserin 97.5 0.00028 6E-09 57.9 6.3 124 117-255 69-197 (203)
104 PRK10530 pyridoxal phosphate ( 97.4 0.00045 9.8E-09 58.8 6.2 68 177-254 199-268 (272)
105 TIGR01488 HAD-SF-IB Haloacid D 97.3 0.00015 3.4E-09 57.5 2.8 94 118-213 75-177 (177)
106 TIGR01511 ATPase-IB1_Cu copper 97.3 0.0027 5.8E-08 60.1 11.1 113 116-254 405-519 (562)
107 TIGR01544 HAD-SF-IE haloacid d 97.1 0.00036 7.8E-09 59.7 2.5 93 119-213 124-230 (277)
108 PRK08238 hypothetical protein; 96.8 0.0015 3.3E-08 60.4 4.8 96 118-225 74-169 (479)
109 TIGR01459 HAD-SF-IIA-hyp4 HAD- 96.7 0.0011 2.4E-08 55.8 2.9 91 116-215 24-116 (242)
110 PRK10671 copA copper exporting 96.7 0.0065 1.4E-07 60.2 8.5 115 116-254 650-765 (834)
111 COG4229 Predicted enolase-phos 96.7 0.012 2.6E-07 46.7 8.1 100 116-222 103-205 (229)
112 TIGR01485 SPP_plant-cyano sucr 96.6 0.0057 1.2E-07 51.6 6.2 50 174-224 164-213 (249)
113 TIGR02471 sucr_syn_bact_C sucr 96.5 0.0061 1.3E-07 50.9 6.1 46 175-222 157-202 (236)
114 TIGR01482 SPP-subfamily Sucros 96.4 0.0053 1.1E-07 50.7 4.9 61 175-245 147-207 (225)
115 PF12689 Acid_PPase: Acid Phos 96.3 0.00076 1.6E-08 53.5 -0.6 108 116-227 45-157 (169)
116 PRK01158 phosphoglycolate phos 96.2 0.0073 1.6E-07 50.0 4.7 62 175-246 155-216 (230)
117 TIGR01484 HAD-SF-IIB HAD-super 96.0 0.011 2.4E-07 48.0 4.9 43 174-217 160-202 (204)
118 PF06189 5-nucleotidase: 5'-nu 95.9 0.34 7.4E-06 40.9 12.9 71 6-81 36-106 (264)
119 COG4087 Soluble P-type ATPase 95.8 0.21 4.7E-06 37.6 10.2 116 118-255 32-148 (152)
120 TIGR02463 MPGP_rel mannosyl-3- 95.8 0.021 4.6E-07 47.0 5.6 41 175-218 179-219 (221)
121 TIGR01522 ATPase-IIA2_Ca golgi 95.7 0.014 3.1E-07 58.1 5.2 128 115-254 527-671 (884)
122 TIGR02251 HIF-SF_euk Dullard-l 95.7 0.00064 1.4E-08 53.7 -3.7 94 119-221 45-139 (162)
123 PF13419 HAD_2: Haloacid dehal 95.7 0.064 1.4E-06 41.6 7.8 76 2-81 89-174 (176)
124 TIGR01487 SPP-like sucrose-pho 95.4 0.026 5.7E-07 46.3 4.8 59 177-245 147-205 (215)
125 PRK00192 mannosyl-3-phosphogly 95.1 0.04 8.7E-07 47.1 5.1 46 177-224 190-236 (273)
126 PRK10187 trehalose-6-phosphate 95.0 0.12 2.5E-06 44.2 7.7 65 179-256 176-243 (266)
127 TIGR00099 Cof-subfamily Cof su 94.7 0.058 1.3E-06 45.5 5.1 60 177-246 188-247 (256)
128 TIGR01486 HAD-SF-IIB-MPGP mann 94.3 0.26 5.7E-06 41.6 8.2 47 176-224 175-223 (256)
129 TIGR01662 HAD-SF-IIIA HAD-supe 93.7 0.36 7.9E-06 36.1 7.1 78 1-81 36-128 (132)
130 PRK10513 sugar phosphate phosp 93.6 0.11 2.5E-06 44.0 4.6 61 176-246 195-255 (270)
131 PRK11033 zntA zinc/cadmium/mer 93.5 0.12 2.5E-06 50.7 5.2 111 116-254 568-681 (741)
132 PRK03669 mannosyl-3-phosphogly 93.2 0.38 8.3E-06 41.0 7.4 72 178-253 188-264 (271)
133 TIGR01428 HAD_type_II 2-haloal 92.8 0.73 1.6E-05 37.0 8.1 76 2-81 104-189 (198)
134 KOG2630 Enolase-phosphatase E- 92.8 0.88 1.9E-05 37.7 8.3 105 116-224 123-227 (254)
135 TIGR01533 lipo_e_P4 5'-nucleot 92.7 0.079 1.7E-06 45.3 2.3 84 116-210 118-204 (266)
136 TIGR01533 lipo_e_P4 5'-nucleot 92.5 0.19 4.2E-06 42.9 4.5 40 2-41 130-170 (266)
137 PF05761 5_nucleotid: 5' nucle 92.1 0.17 3.7E-06 46.5 3.9 42 182-223 284-326 (448)
138 TIGR01509 HAD-SF-IA-v3 haloaci 92.1 0.76 1.6E-05 36.1 7.3 75 2-81 97-181 (183)
139 TIGR01668 YqeG_hyp_ppase HAD s 91.9 0.81 1.7E-05 36.2 7.2 76 2-81 55-133 (170)
140 TIGR01261 hisB_Nterm histidino 91.8 1.1 2.3E-05 35.2 7.7 78 1-81 40-144 (161)
141 TIGR01116 ATPase-IIA1_Ca sarco 91.5 0.7 1.5E-05 46.5 7.8 72 173-254 610-683 (917)
142 KOG2470 Similar to IMP-GMP spe 91.2 1.1 2.4E-05 39.5 7.5 102 120-222 244-376 (510)
143 TIGR01454 AHBA_synth_RP 3-amin 91.1 1.5 3.2E-05 35.5 8.1 76 2-81 87-172 (205)
144 PRK10976 putative hydrolase; P 91.0 0.26 5.7E-06 41.7 3.7 43 179-223 192-234 (266)
145 PLN02645 phosphoglycolate phos 90.6 0.48 1E-05 41.4 5.1 100 105-219 35-136 (311)
146 TIGR01670 YrbI-phosphatas 3-de 90.6 0.85 1.9E-05 35.4 6.0 76 1-80 39-115 (154)
147 cd01427 HAD_like Haloacid deha 90.2 2 4.4E-05 31.2 7.6 39 2-43 36-74 (139)
148 PRK11587 putative phosphatase; 90.2 2.8 6E-05 34.3 9.1 75 2-81 95-179 (218)
149 PRK15126 thiamin pyrimidine py 89.9 0.46 9.9E-06 40.4 4.3 44 178-223 189-232 (272)
150 PF08282 Hydrolase_3: haloacid 89.8 0.56 1.2E-05 38.6 4.6 60 179-248 188-247 (254)
151 TIGR03351 PhnX-like phosphonat 89.7 1.8 4E-05 35.3 7.7 76 2-80 99-186 (220)
152 PRK06769 hypothetical protein; 89.7 2.1 4.5E-05 33.9 7.6 80 1-81 39-134 (173)
153 TIGR02009 PGMB-YQAB-SF beta-ph 89.6 1.4 2.9E-05 34.8 6.6 75 1-81 99-183 (185)
154 PRK10826 2-deoxyglucose-6-phos 89.5 1.3 2.8E-05 36.4 6.6 77 2-82 104-190 (222)
155 PRK11009 aphA acid phosphatase 89.5 1.5 3.3E-05 36.8 6.9 75 2-81 126-208 (237)
156 COG0560 SerB Phosphoserine pho 89.4 0.35 7.6E-06 39.9 3.0 100 117-218 78-184 (212)
157 PLN02887 hydrolase family prot 89.4 0.61 1.3E-05 44.3 5.0 59 178-246 508-566 (580)
158 TIGR01672 AphA HAD superfamily 89.3 1.3 2.9E-05 37.1 6.5 75 2-81 126-208 (237)
159 TIGR02461 osmo_MPG_phos mannos 89.2 0.56 1.2E-05 39.0 4.1 39 175-216 181-221 (225)
160 PRK13288 pyrophosphatase PpaX; 89.2 2.3 5E-05 34.6 7.8 76 2-81 94-179 (214)
161 PLN02770 haloacid dehalogenase 89.0 1.9 4.2E-05 36.1 7.4 76 2-81 120-205 (248)
162 TIGR02726 phenyl_P_delta pheny 88.7 1.8 3.9E-05 34.3 6.5 77 1-81 45-122 (169)
163 PLN02580 trehalose-phosphatase 88.5 2.1 4.6E-05 38.5 7.5 67 179-256 303-376 (384)
164 TIGR02253 CTE7 HAD superfamily 88.2 2.8 6.1E-05 34.1 7.7 77 2-82 106-193 (221)
165 COG1778 Low specificity phosph 87.7 0.33 7.2E-06 37.8 1.7 80 124-218 43-123 (170)
166 PLN03243 haloacid dehalogenase 87.4 2.8 6E-05 35.6 7.4 76 2-81 121-206 (260)
167 TIGR02252 DREG-2 REG-2-like, H 87.3 2 4.3E-05 34.6 6.2 74 2-80 117-201 (203)
168 TIGR01422 phosphonatase phosph 87.3 3.3 7.2E-05 34.7 7.8 77 2-81 111-198 (253)
169 PRK05446 imidazole glycerol-ph 87.2 11 0.00023 33.7 11.1 78 1-81 41-145 (354)
170 TIGR00213 GmhB_yaeD D,D-heptos 87.2 5.6 0.00012 31.4 8.6 77 1-80 37-146 (176)
171 TIGR01449 PGP_bact 2-phosphogl 87.2 4 8.6E-05 33.0 8.0 76 2-81 97-182 (213)
172 PRK08942 D,D-heptose 1,7-bisph 87.1 6.3 0.00014 31.2 8.9 78 1-81 40-144 (181)
173 PLN02205 alpha,alpha-trehalose 86.8 2.4 5.2E-05 42.4 7.5 64 180-256 765-844 (854)
174 PHA02530 pseT polynucleotide k 86.8 4 8.7E-05 35.1 8.2 32 2-33 199-230 (300)
175 COG2179 Predicted hydrolase of 86.4 3.1 6.7E-05 32.8 6.4 74 2-80 58-134 (175)
176 COG0546 Gph Predicted phosphat 86.3 6 0.00013 32.5 8.6 76 2-81 101-186 (220)
177 PRK14988 GMP/IMP nucleotidase; 86.1 2.1 4.4E-05 35.5 5.8 76 1-80 104-189 (224)
178 PRK09484 3-deoxy-D-manno-octul 85.9 3.7 8.1E-05 32.8 7.0 76 2-81 60-136 (183)
179 PRK13478 phosphonoacetaldehyde 85.9 4.8 0.00011 34.1 8.1 78 2-81 113-200 (267)
180 TIGR01990 bPGM beta-phosphoglu 85.9 4.3 9.3E-05 31.9 7.4 74 2-81 99-182 (185)
181 PF05116 S6PP: Sucrose-6F-phos 85.7 1.3 2.9E-05 37.3 4.5 43 179-223 167-209 (247)
182 TIGR02247 HAD-1A3-hyp Epoxide 85.6 2.7 5.8E-05 34.1 6.1 78 2-81 106-193 (211)
183 PLN02382 probable sucrose-phos 85.5 1.8 4E-05 39.4 5.5 45 179-224 177-224 (413)
184 PRK14501 putative bifunctional 85.3 2.5 5.5E-05 41.4 6.8 65 179-256 659-723 (726)
185 PRK09449 dUMP phosphatase; Pro 84.7 4.4 9.5E-05 33.1 7.1 76 2-81 107-193 (224)
186 PRK13222 phosphoglycolate phos 84.5 8.5 0.00018 31.3 8.8 76 2-81 105-190 (226)
187 TIGR01656 Histidinol-ppas hist 84.2 12 0.00026 28.5 8.9 80 1-81 38-142 (147)
188 PLN02575 haloacid dehalogenase 84.0 5.6 0.00012 35.9 7.8 77 2-82 228-314 (381)
189 TIGR01658 EYA-cons_domain eyes 83.8 1 2.2E-05 37.7 2.8 81 135-224 178-260 (274)
190 PRK13226 phosphoglycolate phos 83.0 4.4 9.6E-05 33.5 6.5 77 1-81 106-192 (229)
191 COG3700 AphA Acid phosphatase 82.5 1.3 2.8E-05 35.3 2.8 44 176-224 169-214 (237)
192 TIGR01664 DNA-3'-Pase DNA 3'-p 82.2 4.7 0.0001 31.7 6.0 77 2-81 54-159 (166)
193 COG1167 ARO8 Transcriptional r 81.7 25 0.00053 32.6 11.4 70 15-84 133-207 (459)
194 PRK13225 phosphoglycolate phos 81.4 8.2 0.00018 33.1 7.7 77 1-81 153-236 (273)
195 TIGR01993 Pyr-5-nucltdase pyri 81.4 12 0.00025 29.6 8.2 75 2-80 93-181 (184)
196 COG3473 Maleate cis-trans isom 81.0 18 0.0004 29.7 8.9 56 20-82 87-148 (238)
197 PLN02940 riboflavin kinase 80.9 8.1 0.00018 34.8 7.8 78 1-82 104-192 (382)
198 TIGR01548 HAD-SF-IA-hyp1 haloa 80.3 5.1 0.00011 32.1 5.8 38 2-42 118-155 (197)
199 COG0561 Cof Predicted hydrolas 80.2 1.9 4.2E-05 36.3 3.4 44 178-223 190-233 (264)
200 TIGR01691 enolase-ppase 2,3-di 79.8 6.8 0.00015 32.4 6.4 79 2-81 107-193 (220)
201 TIGR02254 YjjG/YfnB HAD superf 79.4 7.5 0.00016 31.5 6.6 75 2-81 109-195 (224)
202 TIGR01491 HAD-SF-IB-PSPlk HAD- 78.9 12 0.00025 29.8 7.5 77 2-82 92-188 (201)
203 PRK09456 ?-D-glucose-1-phospha 78.8 7.7 0.00017 31.2 6.4 76 2-81 96-182 (199)
204 COG5610 Predicted hydrolase (H 78.3 1.3 2.7E-05 40.5 1.7 49 172-220 153-201 (635)
205 PRK10725 fructose-1-P/6-phosph 77.9 11 0.00025 29.6 7.1 72 6-81 102-183 (188)
206 TIGR00338 serB phosphoserine p 76.8 19 0.00042 29.1 8.4 76 2-81 97-192 (219)
207 PF00702 Hydrolase: haloacid d 75.9 9.8 0.00021 30.4 6.3 69 2-76 139-214 (215)
208 PRK13223 phosphoglycolate phos 75.0 17 0.00038 30.9 7.8 76 2-81 113-198 (272)
209 TIGR02990 ectoine_eutA ectoine 74.9 22 0.00048 29.8 8.2 40 102-145 179-218 (239)
210 TIGR01675 plant-AP plant acid 74.2 3.6 7.8E-05 34.3 3.3 33 2-34 132-164 (229)
211 PLN03017 trehalose-phosphatase 74.2 13 0.00028 33.3 6.9 67 179-256 285-358 (366)
212 TIGR01549 HAD-SF-IA-v1 haloaci 73.3 21 0.00045 27.0 7.3 25 2-26 76-100 (154)
213 PF12710 HAD: haloacid dehalog 72.7 4.9 0.00011 31.7 3.7 31 179-211 159-192 (192)
214 COG1011 Predicted hydrolase (H 72.3 14 0.00031 29.9 6.5 71 7-81 115-196 (229)
215 PLN02151 trehalose-phosphatase 72.3 9.5 0.00021 34.0 5.6 66 179-256 271-344 (354)
216 PRK10563 6-phosphogluconate ph 71.5 23 0.0005 28.7 7.6 76 2-81 97-183 (221)
217 TIGR01684 viral_ppase viral ph 71.1 0.92 2E-05 39.2 -1.0 76 103-182 124-208 (301)
218 TIGR01685 MDP-1 magnesium-depe 70.4 22 0.00048 28.3 6.9 78 1-81 56-154 (174)
219 TIGR01452 PGP_euk phosphoglyco 69.7 13 0.00029 31.7 5.9 98 105-218 9-108 (279)
220 PRK05839 hypothetical protein; 69.0 57 0.0012 29.0 10.1 112 17-130 63-186 (374)
221 KOG1615 Phosphoserine phosphat 68.9 4.4 9.5E-05 32.9 2.5 33 175-212 159-191 (227)
222 PF09419 PGP_phosphatase: Mito 68.9 5.1 0.00011 31.7 2.9 33 2-34 71-109 (168)
223 COG0214 SNZ1 Pyridoxine biosyn 68.1 4 8.6E-05 34.0 2.2 49 24-76 92-141 (296)
224 KOG3107 Predicted haloacid deh 66.6 12 0.00027 33.4 5.0 78 135-222 373-452 (468)
225 PRK06698 bifunctional 5'-methy 64.5 31 0.00068 31.8 7.6 76 1-82 341-425 (459)
226 PRK07590 L,L-diaminopimelate a 64.1 1.1E+02 0.0024 27.5 11.4 63 16-79 78-145 (409)
227 TIGR01501 MthylAspMutase methy 63.8 46 0.00099 25.3 7.1 77 1-81 24-114 (134)
228 PLN02919 haloacid dehalogenase 63.7 36 0.00079 35.1 8.5 78 1-82 172-260 (1057)
229 COG3340 PepE Peptidase E [Amin 63.5 32 0.00069 28.4 6.5 72 2-78 28-107 (224)
230 TIGR01684 viral_ppase viral ph 62.9 9.4 0.0002 33.1 3.5 42 1-45 157-198 (301)
231 KOG1606 Stationary phase-induc 62.7 6.5 0.00014 32.2 2.4 49 24-76 93-142 (296)
232 TIGR01680 Veg_Stor_Prot vegeta 62.3 9.8 0.00021 32.6 3.5 33 2-34 157-189 (275)
233 PF03767 Acid_phosphat_B: HAD 62.3 5.5 0.00012 33.2 2.0 70 2-82 127-196 (229)
234 TIGR01681 HAD-SF-IIIC HAD-supe 61.7 21 0.00046 26.5 5.0 14 2-15 41-54 (128)
235 COG2503 Predicted secreted aci 61.4 25 0.00054 29.7 5.6 38 3-40 135-174 (274)
236 COG0647 NagD Predicted sugar p 60.3 75 0.0016 27.2 8.6 39 105-145 15-53 (269)
237 TIGR00035 asp_race aspartate r 58.2 88 0.0019 25.8 8.6 70 2-82 71-147 (229)
238 COG4359 Uncharacterized conser 58.1 7.3 0.00016 31.4 1.9 61 186-255 152-213 (220)
239 PLN02423 phosphomannomutase 57.4 14 0.0003 31.0 3.7 37 184-222 192-232 (245)
240 PHA03398 viral phosphatase sup 56.8 8.1 0.00018 33.6 2.1 46 1-49 159-204 (303)
241 PF01680 SOR_SNZ: SOR/SNZ fami 56.6 3.1 6.7E-05 33.2 -0.4 49 24-76 86-135 (208)
242 PF06888 Put_Phosphatase: Puta 55.8 33 0.00071 28.8 5.6 77 179-256 152-233 (234)
243 COG4030 Uncharacterized protei 55.4 48 0.001 27.8 6.2 40 179-220 193-233 (315)
244 PF00532 Peripla_BP_1: Peripla 54.7 1.3E+02 0.0028 25.5 9.4 36 41-79 104-151 (279)
245 PLN02811 hydrolase 54.4 72 0.0016 25.9 7.4 77 2-82 90-182 (220)
246 COG4545 Glutaredoxin-related p 54.3 27 0.00058 23.7 3.8 47 6-53 2-48 (85)
247 PRK05752 uroporphyrinogen-III 53.8 61 0.0013 27.1 7.1 74 5-81 129-232 (255)
248 PRK07366 succinyldiaminopimela 53.5 1.4E+02 0.003 26.5 9.8 65 18-82 72-142 (388)
249 PRK10748 flavin mononucleotide 52.6 63 0.0014 26.7 6.9 70 2-81 125-205 (238)
250 TIGR01508 rib_reduct_arch 2,5- 52.6 83 0.0018 25.6 7.5 66 7-78 90-157 (210)
251 PLN02779 haloacid dehalogenase 52.4 56 0.0012 28.0 6.7 77 2-82 156-244 (286)
252 TIGR01490 HAD-SF-IB-hyp1 HAD-s 52.3 49 0.0011 26.2 6.1 29 2-33 99-127 (202)
253 TIGR02461 osmo_MPG_phos mannos 51.8 17 0.00037 30.0 3.3 29 2-33 27-55 (225)
254 PRK05928 hemD uroporphyrinogen 51.4 68 0.0015 26.3 6.9 70 10-81 4-103 (249)
255 smart00775 LNS2 LNS2 domain. T 51.3 1.1E+02 0.0024 23.6 8.7 96 116-217 27-142 (157)
256 KOG2134 Polynucleotide kinase 51.1 43 0.00094 30.2 5.7 109 104-217 90-229 (422)
257 KOG2469 IMP-GMP specific 5'-nu 50.9 8.6 0.00019 34.7 1.4 51 172-222 283-334 (424)
258 PF03990 DUF348: Domain of unk 50.9 23 0.00049 21.0 2.9 35 4-43 6-40 (43)
259 TIGR00227 ribD_Cterm riboflavi 50.7 98 0.0021 25.1 7.7 65 7-78 95-162 (216)
260 PRK05625 5-amino-6-(5-phosphor 50.2 89 0.0019 25.5 7.3 67 6-78 93-161 (217)
261 PF02219 MTHFR: Methylenetetra 50.0 20 0.00044 30.8 3.6 49 202-254 86-134 (287)
262 cd02071 MM_CoA_mut_B12_BD meth 49.4 81 0.0018 23.1 6.4 77 1-81 22-106 (122)
263 TIGR02114 coaB_strep phosphopa 48.5 14 0.00031 30.6 2.3 27 8-34 15-42 (227)
264 PRK10727 DNA-binding transcrip 47.9 1.3E+02 0.0028 26.0 8.5 76 2-80 171-263 (343)
265 COG1587 HemD Uroporphyrinogen- 47.9 90 0.002 26.1 7.2 73 6-81 123-226 (248)
266 KOG3349 Predicted glycosyltran 47.2 20 0.00044 27.9 2.7 30 4-33 98-129 (170)
267 cd01766 Ufm1 Urm1-like ubiquit 47.1 25 0.00055 23.6 2.8 39 175-214 25-63 (82)
268 COG0731 Fe-S oxidoreductases [ 46.5 16 0.00035 31.7 2.4 36 2-46 104-140 (296)
269 TIGR01486 HAD-SF-IIB-MPGP mann 46.1 26 0.00057 29.3 3.6 29 2-33 28-56 (256)
270 TIGR02463 MPGP_rel mannosyl-3- 46.0 27 0.00058 28.4 3.6 28 2-32 28-55 (221)
271 TIGR01489 DKMTPPase-SF 2,3-dik 45.9 27 0.00058 27.2 3.5 36 2-40 84-119 (188)
272 PRK02261 methylaspartate mutas 45.1 1.3E+02 0.0029 22.7 7.6 77 2-81 27-116 (137)
273 COG1778 Low specificity phosph 45.1 34 0.00074 26.9 3.7 76 2-81 47-123 (170)
274 PRK06816 3-oxoacyl-(acyl carri 44.8 56 0.0012 29.3 5.7 59 7-65 292-362 (378)
275 TIGR00640 acid_CoA_mut_C methy 44.5 1.2E+02 0.0026 22.8 6.7 76 2-81 26-109 (132)
276 TIGR02244 HAD-IG-Ncltidse HAD 43.4 16 0.00034 32.6 1.9 26 1-26 195-220 (343)
277 PF08645 PNK3P: Polynucleotide 42.9 20 0.00044 27.9 2.3 19 2-20 41-59 (159)
278 COG4996 Predicted phosphatase 42.0 14 0.00031 28.0 1.2 31 172-202 86-125 (164)
279 PRK00192 mannosyl-3-phosphogly 41.9 28 0.00061 29.5 3.2 29 2-33 33-61 (273)
280 PRK09348 glyQ glycyl-tRNA synt 41.9 24 0.00052 29.9 2.6 46 172-217 81-132 (283)
281 PF10087 DUF2325: Uncharacteri 41.9 1.2E+02 0.0026 21.2 7.6 77 60-141 1-83 (97)
282 cd00733 GlyRS_alpha_core Class 41.5 23 0.0005 29.9 2.4 46 172-217 77-128 (279)
283 CHL00073 chlN photochlorophyll 41.5 3E+02 0.0064 25.6 11.1 147 59-228 194-351 (457)
284 PF02358 Trehalose_PPase: Treh 41.3 47 0.001 27.4 4.4 46 178-224 166-219 (235)
285 PF06506 PrpR_N: Propionate ca 40.9 1.4E+02 0.003 23.5 6.8 95 116-226 61-155 (176)
286 PRK07681 aspartate aminotransf 40.3 2.7E+02 0.0059 24.8 10.5 65 18-82 73-143 (399)
287 TIGR01481 ccpA catabolite cont 40.3 2.3E+02 0.0051 24.1 9.0 74 2-80 171-262 (329)
288 PRK00208 thiG thiazole synthas 39.3 67 0.0014 27.2 4.9 48 175-226 160-209 (250)
289 TIGR01512 ATPase-IB2_Cd heavy 39.3 1.1E+02 0.0023 29.0 6.9 75 1-81 373-449 (536)
290 PRK11590 hypothetical protein; 39.1 19 0.00041 29.3 1.6 100 117-221 96-202 (211)
291 PF09269 DUF1967: Domain of un 39.0 31 0.00068 22.8 2.4 20 183-202 46-65 (69)
292 PRK08636 aspartate aminotransf 39.0 2.9E+02 0.0062 24.7 10.7 65 18-82 75-145 (403)
293 PF02571 CbiJ: Precorrin-6x re 39.0 54 0.0012 27.7 4.4 62 180-255 184-249 (249)
294 PF11019 DUF2608: Protein of u 38.6 43 0.00093 28.3 3.8 43 180-223 165-211 (252)
295 COG1794 RacX Aspartate racemas 38.3 2.4E+02 0.0051 23.6 8.8 70 2-82 71-147 (230)
296 COG0637 Predicted phosphatase/ 38.2 1.2E+02 0.0025 24.9 6.2 79 1-83 97-185 (221)
297 TIGR01663 PNK-3'Pase polynucle 37.7 35 0.00076 32.3 3.3 34 2-35 209-251 (526)
298 PRK05928 hemD uroporphyrinogen 37.3 1.9E+02 0.0041 23.5 7.5 74 5-81 124-229 (249)
299 PRK04296 thymidine kinase; Pro 37.2 44 0.00095 26.7 3.5 95 104-202 78-174 (190)
300 TIGR00099 Cof-subfamily Cof su 37.1 39 0.00085 28.1 3.3 29 2-33 28-56 (256)
301 PRK06732 phosphopantothenate-- 37.0 23 0.00051 29.4 1.9 27 8-34 16-43 (229)
302 PRK10014 DNA-binding transcrip 36.8 2.7E+02 0.0059 23.9 9.4 75 3-80 178-269 (342)
303 PLN02954 phosphoserine phospha 36.7 36 0.00079 27.6 3.0 29 2-33 96-124 (224)
304 PF06437 ISN1: IMP-specific 5' 36.7 74 0.0016 28.7 4.9 29 2-30 178-206 (408)
305 TIGR00388 glyQ glycyl-tRNA syn 36.6 31 0.00067 29.3 2.5 46 172-217 78-129 (293)
306 PF12646 DUF3783: Domain of un 36.1 41 0.0009 21.3 2.5 37 8-44 2-38 (58)
307 TIGR01675 plant-AP plant acid 36.0 26 0.00057 29.2 2.0 29 117-145 121-149 (229)
308 cd02067 B12-binding B12 bindin 35.8 1.7E+02 0.0036 21.1 6.2 77 1-80 22-105 (119)
309 PRK07475 hypothetical protein; 35.8 2.6E+02 0.0056 23.4 8.1 69 2-79 74-146 (245)
310 TIGR03595 Obg_CgtA_exten Obg f 35.6 48 0.001 21.9 2.9 20 183-202 46-65 (69)
311 TIGR00521 coaBC_dfp phosphopan 35.6 29 0.00063 31.4 2.4 27 8-34 201-228 (390)
312 PRK14502 bifunctional mannosyl 35.4 84 0.0018 30.8 5.5 44 177-222 613-658 (694)
313 cd00532 MGS-like MGS-like doma 35.2 1.7E+02 0.0037 21.0 6.2 57 12-75 6-65 (112)
314 cd01523 RHOD_Lact_B Member of 34.6 61 0.0013 22.5 3.6 28 5-33 60-87 (100)
315 TIGR01511 ATPase-IB1_Cu copper 34.3 1.4E+02 0.0029 28.5 6.8 73 1-81 416-490 (562)
316 PRK06207 aspartate aminotransf 34.2 3.1E+02 0.0068 24.6 8.9 67 16-82 80-152 (405)
317 PF06014 DUF910: Bacterial pro 33.9 35 0.00076 22.2 1.9 24 183-211 8-31 (62)
318 PLN02368 alanine transaminase 33.8 2.8E+02 0.006 25.2 8.5 64 18-81 111-180 (407)
319 PRK14719 bifunctional RNAse/5- 33.7 2.4E+02 0.0053 25.2 7.9 67 8-78 232-301 (360)
320 PRK05579 bifunctional phosphop 33.4 32 0.00068 31.3 2.3 27 8-34 204-231 (399)
321 PRK08811 uroporphyrinogen-III 33.2 1.4E+02 0.003 25.4 6.0 29 5-35 137-165 (266)
322 PTZ00377 alanine aminotransfer 33.2 2.9E+02 0.0064 25.5 8.7 68 15-82 116-189 (481)
323 PF02350 Epimerase_2: UDP-N-ac 33.1 3.4E+02 0.0075 23.9 10.9 156 40-231 127-294 (346)
324 cd02072 Glm_B12_BD B12 binding 33.0 2.1E+02 0.0046 21.5 7.7 76 2-81 23-112 (128)
325 PF11019 DUF2608: Protein of u 32.6 90 0.0019 26.4 4.8 8 195-202 202-209 (252)
326 PF13433 Peripla_BP_5: Peripla 32.4 99 0.0021 27.8 5.1 77 2-82 64-167 (363)
327 COG2897 SseA Rhodanese-related 32.3 80 0.0017 27.3 4.4 51 175-226 71-127 (285)
328 PF04127 DFP: DNA / pantothena 32.0 24 0.00052 28.4 1.1 27 8-34 19-46 (185)
329 PF01872 RibD_C: RibD C-termin 32.0 2.1E+02 0.0046 22.7 6.8 31 45-78 125-155 (200)
330 TIGR00677 fadh2_euk methylenet 31.9 87 0.0019 26.9 4.6 49 202-254 75-123 (281)
331 PRK09189 uroporphyrinogen-III 31.7 2.2E+02 0.0047 23.4 7.0 56 22-80 84-144 (240)
332 PTZ00174 phosphomannomutase; P 31.6 62 0.0013 27.0 3.6 37 180-221 191-231 (247)
333 TIGR00623 sula cell division i 31.6 62 0.0014 25.6 3.3 53 168-222 60-117 (168)
334 PF03709 OKR_DC_1_N: Orn/Lys/A 31.4 2E+02 0.0044 20.8 6.4 40 102-142 36-77 (115)
335 PRK11133 serB phosphoserine ph 31.3 2E+02 0.0043 25.3 6.8 76 2-81 193-288 (322)
336 cd01445 TST_Repeats Thiosulfat 31.2 1.6E+02 0.0035 22.1 5.6 50 175-224 76-132 (138)
337 cd00153 RalGDS_RA Ubiquitin do 30.8 94 0.002 21.6 3.7 28 7-35 18-45 (87)
338 PRK05380 pyrG CTP synthetase; 30.5 1.9E+02 0.0041 27.5 6.8 12 69-80 193-204 (533)
339 cd04728 ThiG Thiazole synthase 30.1 1.2E+02 0.0026 25.7 4.9 48 175-226 160-209 (248)
340 TIGR01525 ATPase-IB_hvy heavy 30.0 2.4E+02 0.0051 26.8 7.6 75 1-81 395-471 (556)
341 PRK07239 bifunctional uroporph 30.0 4E+02 0.0087 23.7 13.9 57 24-82 109-175 (381)
342 PRK09552 mtnX 2-hydroxy-3-keto 29.9 33 0.00072 27.9 1.7 20 2-21 86-105 (219)
343 COG4850 Uncharacterized conser 29.9 1.6E+02 0.0036 26.0 5.8 59 7-68 214-287 (373)
344 PF02142 MGS: MGS-like domain 29.8 51 0.0011 23.0 2.4 41 21-67 3-43 (95)
345 cd06297 PBP1_LacI_like_12 Liga 29.6 3.2E+02 0.0069 22.5 9.5 72 6-80 113-206 (269)
346 TIGR00715 precor6x_red precorr 29.4 1E+02 0.0022 26.2 4.5 41 205-256 214-254 (256)
347 KOG2470 Similar to IMP-GMP spe 29.1 29 0.00064 30.9 1.2 18 1-19 251-268 (510)
348 cd00860 ThrRS_anticodon ThrRS 29.1 94 0.002 20.8 3.7 49 17-68 14-62 (91)
349 PRK05764 aspartate aminotransf 28.9 4.1E+02 0.0088 23.5 9.8 64 19-82 73-141 (393)
350 PRK09620 hypothetical protein; 28.8 53 0.0012 27.3 2.7 27 8-34 19-46 (229)
351 PF03659 Glyco_hydro_71: Glyco 28.8 69 0.0015 29.0 3.6 21 203-223 19-39 (386)
352 PRK11041 DNA-binding transcrip 28.4 3.6E+02 0.0077 22.6 8.7 75 3-80 148-239 (309)
353 cd01521 RHOD_PspE2 Member of t 28.3 95 0.0021 22.0 3.7 29 5-33 63-92 (110)
354 PRK05406 LamB/YcsF family prot 28.2 3.4E+02 0.0073 23.0 7.3 86 162-252 97-196 (246)
355 TIGR02638 lactal_redase lactal 28.0 3.3E+02 0.0072 24.3 7.9 71 2-75 24-104 (379)
356 cd01527 RHOD_YgaP Member of th 27.9 1E+02 0.0023 21.1 3.8 28 5-33 53-80 (99)
357 KOG3120 Predicted haloacid deh 27.9 3E+02 0.0065 23.1 6.7 35 190-225 179-214 (256)
358 TIGR00676 fadh2 5,10-methylene 27.8 1E+02 0.0022 26.3 4.4 46 203-254 75-120 (272)
359 COG1985 RibD Pyrimidine reduct 27.8 2.9E+02 0.0063 22.8 6.9 64 7-78 98-163 (218)
360 COG5663 Uncharacterized conser 27.7 62 0.0014 25.7 2.7 39 185-227 129-167 (194)
361 PRK10014 DNA-binding transcrip 27.6 3.9E+02 0.0085 22.8 10.1 71 5-79 119-214 (342)
362 PRK08361 aspartate aminotransf 27.4 4.4E+02 0.0095 23.3 10.2 66 17-82 73-143 (391)
363 smart00775 LNS2 LNS2 domain. T 27.0 80 0.0017 24.4 3.3 13 189-201 138-150 (157)
364 PF00403 HMA: Heavy-metal-asso 26.9 1.2E+02 0.0026 18.9 3.6 27 7-33 36-62 (62)
365 cd08183 Fe-ADH2 Iron-containin 26.8 2.9E+02 0.0062 24.7 7.3 70 3-75 19-93 (374)
366 TIGR02329 propionate_PrpR prop 26.7 5E+02 0.011 24.6 9.0 91 116-223 81-172 (526)
367 TIGR01488 HAD-SF-IB Haloacid D 26.7 72 0.0016 24.5 3.0 29 2-33 85-113 (177)
368 PRK08912 hypothetical protein; 26.4 4.5E+02 0.0098 23.2 10.4 64 18-81 67-136 (387)
369 cd00858 GlyRS_anticodon GlyRS 26.3 83 0.0018 23.0 3.2 59 7-69 27-89 (121)
370 cd01448 TST_Repeat_1 Thiosulfa 26.1 1.1E+02 0.0024 22.0 3.8 18 18-35 62-79 (122)
371 TIGR02250 FCP1_euk FCP1-like p 25.9 15 0.00034 28.5 -0.9 83 117-211 59-143 (156)
372 PRK05294 carB carbamoyl phosph 25.7 6.3E+02 0.014 26.3 10.3 66 179-255 670-735 (1066)
373 PF07592 DDE_Tnp_ISAZ013: Rhod 25.4 1E+02 0.0022 27.0 3.9 32 17-55 24-55 (311)
374 PF08353 DUF1727: Domain of un 25.4 1.6E+02 0.0034 21.6 4.4 61 2-66 49-109 (113)
375 PF08541 ACP_syn_III_C: 3-Oxoa 25.3 1.8E+02 0.0038 19.7 4.5 57 7-66 11-77 (90)
376 TIGR01497 kdpB K+-transporting 25.2 3.8E+02 0.0083 26.3 8.1 113 117-254 447-561 (675)
377 PF07862 Nif11: Nitrogen fixat 25.1 47 0.001 20.1 1.4 23 17-39 26-48 (49)
378 PRK15424 propionate catabolism 25.1 6E+02 0.013 24.2 13.0 89 116-223 91-182 (538)
379 PF01316 Arg_repressor: Argini 25.0 22 0.00048 23.7 -0.2 24 12-35 14-37 (70)
380 PF02602 HEM4: Uroporphyrinoge 25.0 1.8E+02 0.0039 23.5 5.3 65 5-75 116-185 (231)
381 PRK08068 transaminase; Reviewe 24.9 4.9E+02 0.011 23.0 10.2 65 18-82 74-144 (389)
382 TIGR01279 DPOR_bchN light-inde 24.9 2.8E+02 0.006 25.2 6.8 64 191-255 272-341 (407)
383 cd01537 PBP1_Repressors_Sugar_ 24.7 2.6E+02 0.0056 22.3 6.3 23 41-66 104-126 (264)
384 PLN02831 Bifunctional GTP cycl 24.7 55 0.0012 30.3 2.2 47 2-53 376-425 (450)
385 PRK15473 cbiF cobalt-precorrin 24.6 3.6E+02 0.0077 22.6 7.1 58 6-66 164-234 (257)
386 PF06941 NT5C: 5' nucleotidase 24.6 68 0.0015 25.5 2.6 50 197-256 139-188 (191)
387 KOG3085 Predicted hydrolase (H 24.3 38 0.00083 28.4 1.1 40 1-44 124-163 (237)
388 PRK14059 hypothetical protein; 24.2 4.3E+02 0.0094 22.2 7.5 31 45-78 169-199 (251)
389 cd01575 PBP1_GntR Ligand-bindi 24.2 3.9E+02 0.0084 21.6 8.9 72 6-80 116-203 (268)
390 PHA03398 viral phosphatase sup 24.2 21 0.00046 31.0 -0.5 45 118-163 150-194 (303)
391 cd01525 RHOD_Kc Member of the 24.2 1.3E+02 0.0029 20.8 3.8 27 6-33 65-91 (105)
392 PRK05942 aspartate aminotransf 24.2 5.1E+02 0.011 23.0 10.7 65 18-82 77-147 (394)
393 TIGR02109 PQQ_syn_pqqE coenzym 24.1 83 0.0018 27.8 3.3 31 2-33 77-107 (358)
394 PRK04280 arginine repressor; P 24.0 34 0.00075 26.4 0.7 25 11-35 12-36 (148)
395 PRK13355 bifunctional HTH-doma 23.9 6E+02 0.013 23.7 10.7 64 18-81 189-257 (517)
396 PRK05066 arginine repressor; P 23.6 41 0.0009 26.3 1.1 49 11-66 17-71 (156)
397 PRK07568 aspartate aminotransf 23.6 5.1E+02 0.011 22.8 11.3 65 18-82 70-138 (397)
398 TIGR02370 pyl_corrinoid methyl 23.5 2.9E+02 0.0063 22.2 6.1 30 2-33 108-137 (197)
399 TIGR01487 SPP-like sucrose-pho 23.3 77 0.0017 25.5 2.7 29 2-33 30-58 (215)
400 KOG3483 Uncharacterized conser 23.3 84 0.0018 21.3 2.3 39 175-214 36-74 (94)
401 PF03948 Ribosomal_L9_C: Ribos 23.2 93 0.002 21.6 2.7 25 17-41 31-56 (87)
402 cd01444 GlpE_ST GlpE sulfurtra 23.0 1.5E+02 0.0032 20.0 3.8 28 5-33 55-82 (96)
403 TIGR01264 tyr_amTase_E tyrosin 23.0 5.4E+02 0.012 22.9 10.1 65 18-82 77-145 (401)
404 TIGR01522 ATPase-IIA2_Ca golgi 22.9 4E+02 0.0086 27.0 8.1 37 1-40 539-575 (884)
405 cd01532 4RHOD_Repeat_1 Member 22.7 1.6E+02 0.0034 20.1 3.9 28 6-33 50-78 (92)
406 PRK00075 cbiD cobalt-precorrin 22.6 1.5E+02 0.0032 26.6 4.5 47 176-222 207-253 (361)
407 cd01421 IMPCH Inosine monophos 22.5 2E+02 0.0043 23.2 4.8 33 17-55 10-42 (187)
408 PF05221 AdoHcyase: S-adenosyl 22.5 77 0.0017 27.1 2.5 33 2-34 63-95 (268)
409 cd01524 RHOD_Pyr_redox Member 22.3 1.4E+02 0.003 20.1 3.5 27 5-32 50-76 (90)
410 PF02593 dTMP_synthase: Thymid 22.3 1.6E+02 0.0035 24.4 4.3 41 2-42 72-114 (217)
411 KOG0023 Alcohol dehydrogenase, 22.2 88 0.0019 27.7 2.9 58 185-246 173-234 (360)
412 PF03671 Ufm1: Ubiquitin fold 22.1 26 0.00057 23.4 -0.2 36 175-211 25-60 (76)
413 cd01534 4RHOD_Repeat_3 Member 22.0 1.3E+02 0.0029 20.5 3.4 27 6-33 56-82 (95)
414 PRK06975 bifunctional uroporph 22.0 3.3E+02 0.0071 26.6 7.1 57 24-81 92-166 (656)
415 cd01124 KaiC KaiC is a circadi 22.0 1.3E+02 0.0028 23.3 3.7 30 4-35 25-54 (187)
416 PRK09311 bifunctional 3,4-dihy 21.8 68 0.0015 29.2 2.2 47 2-53 342-391 (402)
417 TIGR02981 phageshock_pspE phag 21.8 1.4E+02 0.0031 21.1 3.5 27 6-33 58-84 (101)
418 cd06341 PBP1_ABC_ligand_bindin 21.6 2.6E+02 0.0056 24.0 5.9 70 6-79 132-214 (341)
419 cd06275 PBP1_PurR Ligand-bindi 21.6 3.6E+02 0.0078 21.9 6.6 75 3-80 113-204 (269)
420 cd07945 DRE_TIM_CMS Leptospira 21.5 1.9E+02 0.0041 24.8 4.9 29 195-224 69-97 (280)
421 cd00158 RHOD Rhodanese Homolog 21.5 1.5E+02 0.0032 19.4 3.5 28 5-33 49-76 (89)
422 COG5015 Uncharacterized conser 21.4 78 0.0017 23.6 2.0 13 5-17 35-47 (132)
423 PF03698 UPF0180: Uncharacteri 21.3 2.1E+02 0.0046 19.6 4.1 16 67-82 11-26 (80)
424 cd01522 RHOD_1 Member of the R 21.1 1.6E+02 0.0034 21.3 3.8 26 6-32 64-89 (117)
425 PF05761 5_nucleotid: 5' nucle 21.0 58 0.0013 30.1 1.6 27 2-32 195-223 (448)
426 PHA02554 13 neck protein; Prov 21.0 1.3E+02 0.0029 26.1 3.7 42 15-56 3-50 (311)
427 cd06366 PBP1_GABAb_receptor Li 20.9 2.8E+02 0.0061 23.9 6.0 76 3-78 131-217 (350)
428 PF06745 KaiC: KaiC; InterPro 20.9 96 0.0021 25.2 2.8 28 6-35 48-75 (226)
429 TIGR01544 HAD-SF-IE haloacid d 20.9 1.3E+02 0.0029 25.9 3.7 29 2-33 133-161 (277)
430 PRK05282 (alpha)-aspartyl dipe 20.9 3.8E+02 0.0083 22.3 6.4 66 5-78 30-102 (233)
431 PF00070 Pyr_redox: Pyridine n 20.9 1.4E+02 0.003 19.7 3.2 16 18-33 9-24 (80)
432 PRK05301 pyrroloquinoline quin 20.7 1E+02 0.0022 27.5 3.2 31 2-33 86-116 (378)
433 cd01458 vWA_ku Ku70/Ku80 N-ter 20.6 93 0.002 25.3 2.7 14 5-18 127-140 (218)
434 PRK08057 cobalt-precorrin-6x r 20.6 1.9E+02 0.0042 24.4 4.6 63 180-256 180-246 (248)
435 TIGR03278 methan_mark_10 putat 20.6 1.1E+02 0.0024 27.9 3.3 32 2-33 98-130 (404)
436 PLN02723 3-mercaptopyruvate su 20.4 2.1E+02 0.0046 25.0 5.0 51 175-225 84-139 (320)
437 KOG3107 Predicted haloacid deh 20.3 2.5E+02 0.0055 25.5 5.3 67 9-79 373-446 (468)
438 PF07085 DRTGG: DRTGG domain; 20.3 1.3E+02 0.0027 21.3 3.0 36 193-229 40-76 (105)
439 KOG4132 Uroporphyrinogen III s 20.2 4.7E+02 0.01 22.0 6.5 70 5-78 132-207 (260)
440 cd08181 PPD-like 1,3-propanedi 20.2 5.6E+02 0.012 22.6 7.8 70 2-74 21-100 (357)
441 PRK09189 uroporphyrinogen-III 20.2 3.8E+02 0.0083 21.9 6.4 34 5-40 117-150 (240)
442 cd04928 ACT_TyrKc Uncharacteri 20.1 1.5E+02 0.0033 19.6 3.1 35 8-42 3-37 (68)
No 1
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.2e-53 Score=351.02 Aligned_cols=253 Identities=55% Similarity=0.867 Sum_probs=225.0
Q ss_pred ChhccCCcEEEEeCCCCcCHHHHHHHHHhCCCC-CCCCceechHHHHHHHHHhcCCCCCCEEEEEcCHHHHHHHHHcCCe
Q 025117 1 MLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT-VTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDGILKELELAGFQ 79 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~-~~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~~~~~~~l~~~g~~ 79 (257)
+|++.||+++|+||||++|+++|.++++++|+. +.+++|++|+.+++.||+++. +.+++||++|+++++++|+++|++
T Consensus 49 ~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~v~e~~i~ssa~~~a~ylk~~~-~~~k~Vyvig~~gi~~eL~~aG~~ 127 (306)
T KOG2882|consen 49 LLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNSVKEENIFSSAYAIADYLKKRK-PFGKKVYVIGEEGIREELDEAGFE 127 (306)
T ss_pred HHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccccCcccccChHHHHHHHHHHhC-cCCCeEEEecchhhhHHHHHcCce
Confidence 478999999999999999999999999999999 999999999999999998776 467899999999999999999999
Q ss_pred eeCCCCCCCCccccCCCcc-cCCCCCccEEEEeccCCCCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCch
Q 025117 80 YLGGPEDGGKKIELKPGFL-MEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGS 158 (257)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~aVv~~~d~~~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~ 158 (257)
..+.+.+....-...++.. ...+++|.|||+|+|.+++|.++..|+..|+ ++++.+++||.|...|...+..++|.|+
T Consensus 128 ~~g~~~~~~~~~~~~~~~~~~~~d~~VgAVvvg~D~hfsy~KL~kA~~yLq-nP~clflatn~D~~~p~~~~~~ipG~G~ 206 (306)
T KOG2882|consen 128 YFGGGPDGKDTDGAKSFVLSIGLDPDVGAVVVGYDEHFSYPKLMKALNYLQ-NPGCLFLATNRDATTPPTPGVEIPGAGS 206 (306)
T ss_pred eecCCCCcccccccccchhhcCCCCCCCEEEEecccccCHHHHHHHHHHhC-CCCcEEEeccCccccCCCCCeeccCCcc
Confidence 9876555422100011111 1237789999999999999999999999998 5999999999999888667889999999
Q ss_pred HHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCC--CCC
Q 025117 159 MVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSP--NNS 236 (257)
Q Consensus 159 ~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~--~~~ 236 (257)
+.+++..++++++.++|||++.++++++++++++|++|+||||++.|||.+|+++|++|+||.+|.++.+++... +..
T Consensus 207 ~v~av~~~t~R~P~v~GKP~~~m~~~l~~~~~i~psRt~mvGDRL~TDIlFG~~~G~~TLLvltGv~~led~~~~~~~~~ 286 (306)
T KOG2882|consen 207 FVAAVKFATGRQPIVLGKPSTFMFEYLLEKFNIDPSRTCMVGDRLDTDILFGKNCGFKTLLVLSGVTTLEDILEAQGDNK 286 (306)
T ss_pred HHHHHHHHhcCCCeecCCCCHHHHHHHHHHcCCCcceEEEEcccchhhhhHhhccCcceEEEecCcCcHHHHHhcccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987654 556
Q ss_pred CCCcEEECChhhHHHHHHh
Q 025117 237 IQPDFYTNKISDFLSLKAA 255 (257)
Q Consensus 237 ~~pd~~~~~l~el~~~l~~ 255 (257)
..|||+++++.++...++.
T Consensus 287 ~~PDyy~~~l~d~~~~~~~ 305 (306)
T KOG2882|consen 287 MVPDYYADSLGDLLPLLNN 305 (306)
T ss_pred CCCchHHhhHHHHhhhccC
Confidence 7899999999999877653
No 2
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-48 Score=327.18 Aligned_cols=233 Identities=39% Similarity=0.608 Sum_probs=211.7
Q ss_pred ChhccCCcEEEEeCCCCcCHHHHHHHHHh-CCCCCCCCceechHHHHHHHHHhcCCCCCCEEEEEcCHHHHHHHHHcCCe
Q 025117 1 MLRSKGKRLVFVTNNSTKSRKQYGKKFET-LGLTVTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDGILKELELAGFQ 79 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~~~~~~~~~L~~-~G~~~~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~~~~~~~l~~~g~~ 79 (257)
+|+++|+|++||||||+++++.++++|+. +|+++.+++|+||++++++||++.. ++++||++|+++++++++.+|+.
T Consensus 35 ~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS~~at~~~l~~~~--~~~kv~viG~~~l~~~l~~~G~~ 112 (269)
T COG0647 35 RLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVTSGDATADYLAKQK--PGKKVYVIGEEGLKEELEGAGFE 112 (269)
T ss_pred HHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeecHHHHHHHHHHhhC--CCCEEEEECCcchHHHHHhCCcE
Confidence 37899999999999999999999999999 7778999999999999999998753 44899999999999999999999
Q ss_pred eeCCCCCCCCccccCCCcccCCCCCccEEEEeccCCCCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchH
Q 025117 80 YLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSM 159 (257)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~aVv~~~d~~~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~ 159 (257)
.+...+ +..+++|++|.|+.++|+++.+++..+++ |.++||||+|..++...+ .++|.|++
T Consensus 113 ~~~~~~----------------~~~~d~Vv~g~d~~~~~e~l~~a~~~i~~--g~~fI~tNpD~~~p~~~g-~~pgaGai 173 (269)
T COG0647 113 LVDEEE----------------PARVDAVVVGLDRTLTYEKLAEALLAIAA--GAPFIATNPDLTVPTERG-LRPGAGAI 173 (269)
T ss_pred EeccCC----------------CCcccEEEEecCCCCCHHHHHHHHHHHHc--CCcEEEeCCCccccCCCC-CccCcHHH
Confidence 875321 12379999999999999999999999985 699999999999987655 88999999
Q ss_pred HHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCC
Q 025117 160 VGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQP 239 (257)
Q Consensus 160 ~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~p 239 (257)
...++.++|.++.++|||++.+|+.+++.++.++++++||||++.|||.+|+++||.|++|+||.++.+++.. ...+|
T Consensus 174 ~~~~~~~tg~~~~~~GKP~~~i~~~al~~~~~~~~~~~mVGD~~~TDI~~a~~~G~~t~LV~TGv~~~~~~~~--~~~~p 251 (269)
T COG0647 174 AALLEQATGREPTVIGKPSPAIYEAALEKLGLDRSEVLMVGDRLDTDILGAKAAGLDTLLVLTGVSSAEDLDR--AEVKP 251 (269)
T ss_pred HHHHHHhhCCcccccCCCCHHHHHHHHHHhCCCcccEEEEcCCchhhHHHHHHcCCCEEEEccCCCChhhhhh--hccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888664 35789
Q ss_pred cEEECChhhHHHHHHhh
Q 025117 240 DFYTNKISDFLSLKAAA 256 (257)
Q Consensus 240 d~~~~~l~el~~~l~~~ 256 (257)
+|+.+++.++..++...
T Consensus 252 ~~v~~sl~~~~~~~~~~ 268 (269)
T COG0647 252 TYVVDSLAELITALKEL 268 (269)
T ss_pred cchHhhHHHHHhhhhcc
Confidence 99999999998877654
No 3
>PLN02645 phosphoglycolate phosphatase
Probab=100.00 E-value=1.4e-45 Score=321.25 Aligned_cols=257 Identities=90% Similarity=1.380 Sum_probs=219.1
Q ss_pred ChhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHHHHHHHHHhcCCCCCCEEEEEcCHHHHHHHHHcCCee
Q 025117 1 MLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDGILKELELAGFQY 80 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~~~~~~~l~~~g~~~ 80 (257)
+||++|++++|+|||++++++++.++|+++||++..++|+||+.+++.||++.++.++++||++|+.++.+++++.|+..
T Consensus 55 ~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~I~ts~~~~~~~l~~~~~~~~~~V~viG~~~~~~~l~~~Gi~~ 134 (311)
T PLN02645 55 MLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEEIFSSSFAAAAYLKSINFPKDKKVYVIGEEGILEELELAGFQY 134 (311)
T ss_pred HHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhhEeehHHHHHHHHHhhccCCCCEEEEEcCHHHHHHHHHCCCEE
Confidence 37889999999999999999999999999999999999999999999999976654557899999999999999999998
Q ss_pred eCCCCCCCCccccCCCcccCCCCCccEEEEeccCCCCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHH
Q 025117 81 LGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMV 160 (257)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~aVv~~~d~~~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~ 160 (257)
..+.++........+....+.++++++|++|+|+.++|+++..++.+++.++|+++|+||+|..++....+..+|.|+++
T Consensus 135 ~~g~~~~~~~~~~~~~~~~~~~~~i~aVvvg~d~~~~~~~l~~a~~~l~~~~g~~~i~tn~d~~~~~~~~~~~~g~g~~~ 214 (311)
T PLN02645 135 LGGPEDGDKKIELKPGFLMEHDKDVGAVVVGFDRYINYYKIQYATLCIRENPGCLFIATNRDAVTHLTDAQEWAGAGSMV 214 (311)
T ss_pred ecCccccccccccccccccccCCCCCEEEEecCCCCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCCCCCCCccchHHHH
Confidence 76543322111111111123346789999999999999999999999976578999999999976544455788999999
Q ss_pred HHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCc
Q 025117 161 GAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPD 240 (257)
Q Consensus 161 ~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd 240 (257)
+.+..+++.++..+|||+|.+|+.+++++++++++++||||++.+||.+|+++|+++++|.||.++.+++...+....||
T Consensus 215 ~~i~~~~~~~~~~~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~ilV~~G~~~~~~~~~~~~~~~pd 294 (311)
T PLN02645 215 GAIKGSTEREPLVVGKPSTFMMDYLANKFGIEKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSESMLLSPENKIQPD 294 (311)
T ss_pred HHHHHHhCCCcccCCCChHHHHHHHHHHcCCCcccEEEEcCCcHHHHHHHHHcCCCEEEEcCCCCCHHHHHhccCCCCCC
Confidence 99999999888888999999999999999999999999999988999999999999999999999887764322346899
Q ss_pred EEECChhhHHHHHHhhC
Q 025117 241 FYTNKISDFLSLKAAAV 257 (257)
Q Consensus 241 ~~~~~l~el~~~l~~~~ 257 (257)
++++++.+|.+++++-|
T Consensus 295 ~~~~~~~~l~~~~~~~~ 311 (311)
T PLN02645 295 FYTSKISDFLTLKAATV 311 (311)
T ss_pred EEECCHHHHHHHhhcCC
Confidence 99999999999988654
No 4
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=100.00 E-value=1.9e-44 Score=310.01 Aligned_cols=247 Identities=43% Similarity=0.724 Sum_probs=208.6
Q ss_pred ChhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHHHHHHHHHhcCCCCCCEEEEEcCHHHHHHHHHcCCee
Q 025117 1 MLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDGILKELELAGFQY 80 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~~~~~~~l~~~g~~~ 80 (257)
+|+++|++++|+|||+++++.++.++|+++|+++..++|+||+.+++.||+++.. +++++|++|.++++++|++.|+..
T Consensus 29 ~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~~i~ts~~~~~~~l~~~~~-~~~~v~~iG~~~~~~~l~~~g~~~ 107 (279)
T TIGR01452 29 RLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLAEQLFSSALCAARLLRQPPD-APKAVYVIGEEGLRAELDAAGIRL 107 (279)
T ss_pred HHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEecHHHHHHHHHHhhCc-CCCEEEEEcCHHHHHHHHHCCCEE
Confidence 3788999999999999999999999999999999999999999999999997432 357899999999999999999998
Q ss_pred eCCCCCCCCccccCCCcccCCCCCccEEEEeccCCCCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHH
Q 025117 81 LGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMV 160 (257)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~aVv~~~d~~~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~ 160 (257)
+..+++...............++++++|++++|.+++|+++.+++..|+. +|+++|+||++..++....+..++.|.++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvv~~d~~~~y~~i~~~l~~L~~-~g~~~i~Tn~d~~~~~~~~~~~~~~g~~~ 186 (279)
T TIGR01452 108 AGDPSAGDGAAPRGSGAFMKLEENVGAVVVGYDEHFSYAKLREACAHLRE-PGCLFVATNRDPWHPLSDGSRTPGTGSLV 186 (279)
T ss_pred ecCcccccccchhhcccccccCCCCCEEEEecCCCCCHHHHHHHHHHHhc-CCCEEEEeCCCCCCCCcCCCcccChHHHH
Confidence 76554432110000111122346799999999999999999999999985 57899999999977644455678999999
Q ss_pred HHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCC----CCC
Q 025117 161 GAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSP----NNS 236 (257)
Q Consensus 161 ~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~----~~~ 236 (257)
+.+..+++.+....|||+|.+|+.++++++++|++++||||++.+||++|+++||++++|.||.++.+++... ...
T Consensus 187 ~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~~lmIGD~~~tDI~~A~~aGi~si~V~~G~~~~~~l~~~~~~~~~~ 266 (279)
T TIGR01452 187 AAIETASGRQPLVVGKPSPYMFECITENFSIDPARTLMVGDRLETDILFGHRCGMTTVLVLSGVSRLEEAQEYLAAGQHD 266 (279)
T ss_pred HHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhhEEEECCChHHHHHHHHHcCCcEEEECCCCCCHHHHHhhhcccccC
Confidence 9999888888888899999999999999999999999999998899999999999999999999988876531 234
Q ss_pred CCCcEEECChhhH
Q 025117 237 IQPDFYTNKISDF 249 (257)
Q Consensus 237 ~~pd~~~~~l~el 249 (257)
..|||+++++.||
T Consensus 267 ~~Pd~~~~~l~~l 279 (279)
T TIGR01452 267 LVPDYVVESLADL 279 (279)
T ss_pred CCCCEEecccccC
Confidence 6899999999874
No 5
>PRK10444 UMP phosphatase; Provisional
Probab=100.00 E-value=5.6e-44 Score=301.06 Aligned_cols=218 Identities=32% Similarity=0.539 Sum_probs=198.5
Q ss_pred ChhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHHHHHHHHHhcCCCCCCEEEEEcCHHHHHHHHHcCCee
Q 025117 1 MLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDGILKELELAGFQY 80 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~~~~~~~l~~~g~~~ 80 (257)
+|+++|++++|+|||++++++++.++|+++||++++++|+||+.++++||+++ +++++|++|+.++.++|++.|+..
T Consensus 28 ~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~~~i~ts~~~~~~~L~~~---~~~~v~~~g~~~l~~~l~~~g~~~ 104 (248)
T PRK10444 28 RILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTSAMATADFLRRQ---EGKKAYVIGEGALIHELYKAGFTI 104 (248)
T ss_pred HHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCHhhEecHHHHHHHHHHhC---CCCEEEEEcCHHHHHHHHHCcCEe
Confidence 37889999999999999999999999999999999999999999999999975 246899999999999999999875
Q ss_pred eCCCCCCCCccccCCCcccCCCCCccEEEEeccCCCCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHH
Q 025117 81 LGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMV 160 (257)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~aVv~~~d~~~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~ 160 (257)
. ++++++|+++++.+++|.++..++.+++ ++.++|+||+|...+ + ..++.|++.
T Consensus 105 ~--------------------~~~~~~Vvvg~~~~~~~~~l~~a~~~l~--~g~~~i~~n~D~~~~---g-~~~~~G~~~ 158 (248)
T PRK10444 105 T--------------------DINPDFVIVGETRSYNWDMMHKAAYFVA--NGARFIATNPDTHGR---G-FYPACGALC 158 (248)
T ss_pred c--------------------CCCCCEEEEeCCCCCCHHHHHHHHHHHH--CCCEEEEECCCCCCC---C-CcCcHHHHH
Confidence 3 2457899999999999999999999986 489999999999542 3 578999999
Q ss_pred HHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCc
Q 025117 161 GAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPD 240 (257)
Q Consensus 161 ~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd 240 (257)
+.++.+.|.++...|||+|.+|+.++++++++|++|+||||++.+||.+|+++|+++++|.||.++.+++.. ....||
T Consensus 159 ~~l~~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~~G~~~~~~l~~--~~~~pd 236 (248)
T PRK10444 159 AGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSTLDDIDS--MPFRPS 236 (248)
T ss_pred HHHHHHhCCCccccCCCCHHHHHHHHHHcCCCcccEEEECCCcHHHHHHHHHcCCCEEEECCCCCCHHHHhc--CCCCCC
Confidence 999999999888889999999999999999999999999999889999999999999999999999887753 347899
Q ss_pred EEECChhhH
Q 025117 241 FYTNKISDF 249 (257)
Q Consensus 241 ~~~~~l~el 249 (257)
++++++.||
T Consensus 237 ~~~~sl~el 245 (248)
T PRK10444 237 WIYPSVADI 245 (248)
T ss_pred EEECCHHHh
Confidence 999999997
No 6
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=100.00 E-value=1.9e-42 Score=292.67 Aligned_cols=222 Identities=32% Similarity=0.526 Sum_probs=199.5
Q ss_pred ChhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHHHHHHHHHhcCCCCCCEEEEEcCHHHHHHHHHcCCee
Q 025117 1 MLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDGILKELELAGFQY 80 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~~~~~~~l~~~g~~~ 80 (257)
+|+++|++++|+||||+|+++.+.++|+++|+++..++|+||+.++++||++++ +++++|++|+++++++++++|+..
T Consensus 28 ~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~~iit~~~~~~~~l~~~~--~~~~v~~lg~~~l~~~l~~~g~~~ 105 (249)
T TIGR01457 28 ELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATLETVFTASMATADYMNDLK--LEKTVYVIGEEGLKEAIKEAGYVE 105 (249)
T ss_pred HHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEeeHHHHHHHHHHhcC--CCCEEEEEcChhHHHHHHHcCCEe
Confidence 378899999999999999999999999999999999999999999999999763 357899999999999999999875
Q ss_pred eCCCCCCCCccccCCCcccCCCCCccEEEEeccCCCCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHH
Q 025117 81 LGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMV 160 (257)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~aVv~~~d~~~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~ 160 (257)
. ++++++|++++++.++|+++..++.+++ +++++|+||+|..++... ...++.|++.
T Consensus 106 ~--------------------~~~~~~Vvvg~~~~~~y~~l~~a~~~l~--~g~~~i~tN~D~~~~~~~-~~~~~~G~~~ 162 (249)
T TIGR01457 106 D--------------------KEKPDYVVVGLDRQIDYEKFATATLAIR--KGAHFIGTNGDLAIPTER-GLLPGNGSLI 162 (249)
T ss_pred c--------------------CCCCCEEEEeCCCCCCHHHHHHHHHHHH--CCCeEEEECCCCCCCCCC-CCCCCcHHHH
Confidence 3 2457899999999999999999999986 488899999999987543 3568999999
Q ss_pred HHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCc
Q 025117 161 GAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPD 240 (257)
Q Consensus 161 ~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd 240 (257)
..++.+++.+....+||+|.+|+.+++++++++++++||||++.+||.+|+++|+++++|.||.+..+++.. ....|+
T Consensus 163 ~~i~~~~~~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~v~v~~G~~~~~~~~~--~~~~pd 240 (249)
T TIGR01457 163 TVLEVATGVKPVYIGKPNAIIMEKAVEHLGTEREETLMVGDNYLTDIRAGIDAGIDTLLVHTGVTKAEEVAG--LPIAPT 240 (249)
T ss_pred HHHHHHhCCCccccCCChHHHHHHHHHHcCCCcccEEEECCCchhhHHHHHHcCCcEEEEcCCCCCHHHHhc--CCCCCC
Confidence 999999898888899999999999999999999999999999779999999999999999999988776643 336899
Q ss_pred EEECChhhH
Q 025117 241 FYTNKISDF 249 (257)
Q Consensus 241 ~~~~~l~el 249 (257)
++++++.|+
T Consensus 241 ~~v~~l~~~ 249 (249)
T TIGR01457 241 HVVSSLAEW 249 (249)
T ss_pred EEeCChhhC
Confidence 999999874
No 7
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=100.00 E-value=2.4e-40 Score=280.97 Aligned_cols=224 Identities=22% Similarity=0.325 Sum_probs=193.1
Q ss_pred ChhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHHHHHHHHHhcCCCCCCEEEEEcCHHHHHHHHHcCCee
Q 025117 1 MLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDGILKELELAGFQY 80 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~~~~~~~l~~~g~~~ 80 (257)
+||++|++++|+|||++++++++.++|+++||++++++|+||+.++++||++.+ .++|++|++++.+++. |+.
T Consensus 32 ~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~~~i~ts~~~~~~~l~~~~----~~~~~~g~~~~~~~~~--~~~- 104 (257)
T TIGR01458 32 RLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISEDEVFTPAPAARQLLEEKQ----LRPMLLVDDRVLPDFD--GID- 104 (257)
T ss_pred HHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCHHHeEcHHHHHHHHHHhcC----CCeEEEECccHHHHhc--cCC-
Confidence 378899999999999999999999999999999999999999999999998753 4589999988888774 321
Q ss_pred eCCCCCCCCccccCCCcccCCCCCccEEEEeccC-CCCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchH
Q 025117 81 LGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDR-YFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSM 159 (257)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~aVv~~~d~-~~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~ 159 (257)
.+++++|++|++. .++|+++..++..|+..+..++|+||++..++.. ....+|.|.+
T Consensus 105 ---------------------~~~~~~Vv~g~~~~~~~y~~l~~a~~~L~~~~~~~~iatn~~~~~~~~-~~~~~g~g~~ 162 (257)
T TIGR01458 105 ---------------------TSDPNCVVMGLAPEHFSYQILNQAFRLLLDGAKPLLIAIGKGRYYKRK-DGLALDVGPF 162 (257)
T ss_pred ---------------------CCCCCEEEEecccCccCHHHHHHHHHHHHcCCCCEEEEeCCCCCCcCC-CCCCCCchHH
Confidence 2346799999964 7999999999999986444578999999987643 4467899999
Q ss_pred HHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCC
Q 025117 160 VGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQP 239 (257)
Q Consensus 160 ~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~p 239 (257)
++.+..+++.++..+|||+|.+|+.++++++++|++++||||++.+||.+|+++|+++++|.||.+..++.+. ....|
T Consensus 163 ~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~~G~~~i~v~~G~~~~~~~~~--~~~~p 240 (257)
T TIGR01458 163 VTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEAVMIGDDCRDDVGGAQDCGMRGIQVRTGKYRPSDEEK--INVPP 240 (257)
T ss_pred HHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChhhEEEECCCcHHHHHHHHHcCCeEEEECCCCCChHHhcc--cCCCC
Confidence 9999999888887889999999999999999999999999999779999999999999999999865543321 23689
Q ss_pred cEEECChhhHHHHHHh
Q 025117 240 DFYTNKISDFLSLKAA 255 (257)
Q Consensus 240 d~~~~~l~el~~~l~~ 255 (257)
+++++++.||.+++.+
T Consensus 241 d~~~~sl~el~~~l~~ 256 (257)
T TIGR01458 241 DLTCDSLPHAVDLILQ 256 (257)
T ss_pred CEEECCHHHHHHHHhh
Confidence 9999999999988754
No 8
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=100.00 E-value=2e-39 Score=255.52 Aligned_cols=224 Identities=29% Similarity=0.456 Sum_probs=196.3
Q ss_pred ChhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHHHHHHHHHhcCCCCCCEEEEEcCHHHHHHHHHcCCee
Q 025117 1 MLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDGILKELELAGFQY 80 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~~~~~~~l~~~g~~~ 80 (257)
+||..+.+|.|+||.+..|.+.+.++|+++||++++++|+||..++++|++++.+ +.|++-.++.++.|. |+
T Consensus 34 rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~~~l----rP~l~v~d~a~~dF~--gi-- 105 (262)
T KOG3040|consen 34 RLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLEENQL----RPYLIVDDDALEDFD--GI-- 105 (262)
T ss_pred HHHhcCceEEEEecCcchhHHHHHHHHHHhCCCccHHHhcCccHHHHHHHHhcCC----CceEEEcccchhhCC--Cc--
Confidence 3788899999999999999999999999999999999999999999999998654 456666666665543 22
Q ss_pred eCCCCCCCCccccCCCcccCCCCCccEEEEecc-CCCCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchH
Q 025117 81 LGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFD-RYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSM 159 (257)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~aVv~~~d-~~~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~ 159 (257)
+..++++||+|.. +.|+|..+..+++.|.+.+..++|+-++.+.+....+ ..+|.|+|
T Consensus 106 --------------------dTs~pn~VViglape~F~y~~ln~AFrvL~e~~k~~LIai~kgryykr~~G-l~lgpG~f 164 (262)
T KOG3040|consen 106 --------------------DTSDPNCVVIGLAPEGFSYQRLNRAFRVLLEMKKPLLIAIGKGRYYKRVDG-LCLGPGPF 164 (262)
T ss_pred --------------------cCCCCCeEEEecCcccccHHHHHHHHHHHHcCCCCeEEEecCceeeeeccc-cccCchHH
Confidence 1346889999985 6899999999999999877789999999998765545 56799999
Q ss_pred HHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCC
Q 025117 160 VGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQP 239 (257)
Q Consensus 160 ~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~p 239 (257)
..++++++|.+...+|||+|.+|+.+++.+|++|++++||||++..|+.||+++||+.|+|.||.+...+..+ ....|
T Consensus 165 v~aLeyatg~~a~vvGKP~~~fFe~al~~~gv~p~~aVMIGDD~~dDvgGAq~~GMrgilVkTGK~rpsDe~k--~~~~p 242 (262)
T KOG3040|consen 165 VAALEYATGCEATVVGKPSPFFFESALQALGVDPEEAVMIGDDLNDDVGGAQACGMRGILVKTGKFRPSDEEK--PPVPP 242 (262)
T ss_pred HHHhhhccCceEEEecCCCHHHHHHHHHhcCCChHHheEEccccccchhhHhhhcceeEEeeccccCCccccc--CCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998755443 34789
Q ss_pred cEEECChhhHHHHHHh
Q 025117 240 DFYTNKISDFLSLKAA 255 (257)
Q Consensus 240 d~~~~~l~el~~~l~~ 255 (257)
|.++++|.|.++||.+
T Consensus 243 ~~~~d~f~~AVd~I~q 258 (262)
T KOG3040|consen 243 DLTADNFADAVDLIIQ 258 (262)
T ss_pred chhhhhHHHHHHHHHh
Confidence 9999999999998754
No 9
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=100.00 E-value=3.9e-38 Score=275.46 Aligned_cols=245 Identities=20% Similarity=0.194 Sum_probs=195.3
Q ss_pred hhcc----CCcEEEEeCCCCcCHHHHHHHH-HhCCCCCCCCceechHHHHHHHHHhcCCCCCCEEEEEcCHHHHHHHHHc
Q 025117 2 LRSK----GKRLVFVTNNSTKSRKQYGKKF-ETLGLTVTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDGILKELELA 76 (257)
Q Consensus 2 L~~~----g~~~~~lTN~s~~~~~~~~~~L-~~~G~~~~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~~~~~~~l~~~ 76 (257)
|+++ |++++|+|||+++++++++++| +++|+++++++|+||+.++..|+++. . ++++++|+.+++++++..
T Consensus 28 L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~~~~~i~~s~~~~~~ll~~~--~--~~v~viG~~~~~~~l~~~ 103 (321)
T TIGR01456 28 LNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDVSPLQVIQSHSPYKSLVNKY--E--KRILAVGTGSVRGVAEGY 103 (321)
T ss_pred HhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCCCHHHHHhhhHHHHHHHHHc--C--CceEEEeChHHHHHHHHc
Confidence 5666 9999999999999999999999 88999999999999999998888653 2 479999999999999999
Q ss_pred CCeeeCCCCCCC------CccccCC-------Cccc--CCCCCccEEEEeccCCCCHHHHHHHHHHHHcC---------C
Q 025117 77 GFQYLGGPEDGG------KKIELKP-------GFLM--EHDKDVGAVVVGFDRYFNYYKVQYGTLCIREN---------P 132 (257)
Q Consensus 77 g~~~~~~~~~~~------~~~~~~~-------~~~~--~~~~~~~aVv~~~d~~~~~~~~~~~~~~l~~~---------~ 132 (257)
|+..+...++.. ..+.-.. .... ...++++|||++.|....|.+++.++.+++.. +
T Consensus 104 G~~~vv~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aVvv~~d~~~~~~~l~~~~~~l~~~g~~g~~~~~~ 183 (321)
T TIGR01456 104 GFQNVVHQDEIVRYFRDIDPFSGMSDEQVREYSRDIPDLTTKRFDAVLVFNDPVDWAADIQIISDALNSEGLPGEKSGKP 183 (321)
T ss_pred CCcccccHHHHHhcCCCCCcccccCHHHhhcccccccccCCCceeEEEEecCchHHhhhHHHHHHHHhCCCCcCCCCCCC
Confidence 988643211100 0000000 0000 11257999999999888888899999998752 2
Q ss_pred CceEEEecCCCccccCCCcccccCchHHHHHHh----ccCCCc--cccCCCcHHHHHHHHHHh--------CC-----CC
Q 025117 133 GCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVG----STQREP--LVVGKPSTFMMDYLANKF--------GI-----QK 193 (257)
Q Consensus 133 ~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~----~~~~~~--~~~gKP~p~~~~~~~~~~--------~~-----~~ 193 (257)
.+++|+||+|..++...++.++|.|+|..+++. ++|.++ ..+|||+|.+|+.+++.+ +. ++
T Consensus 184 ~~~~i~~n~D~~~p~~~g~~~~g~Ga~~~~l~~~~~~~tg~~~~~~~~GKP~~~~~~~a~~~l~~~~~~~~~~~~~~~~~ 263 (321)
T TIGR01456 184 SIPIYFSNQDLLWANEYKLNRFGQGAFRLLLERIYLELNGKPLQYYTLGKPTKLTYDFAEDVLIDWEKRLSGTKPSTSPF 263 (321)
T ss_pred CCCEEEeCCCEeeccCCCCceechHHHHHHHHHHHHHhcCCCcceEEcCCCChHHHHHHHHHHHHHHhhhccccccCCCh
Confidence 378999999999986656568999999999987 566643 678999999999999887 43 45
Q ss_pred CcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHHHHH
Q 025117 194 SQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLK 253 (257)
Q Consensus 194 ~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~~~l 253 (257)
++++||||++.+||.+|+++||+|++|.||.++.++.. ....|+++++++.|+.+++
T Consensus 264 ~~~~mIGD~~~tDI~ga~~~G~~silV~tG~~~~~~~~---~~~~p~~vv~~l~e~~~~i 320 (321)
T TIGR01456 264 HALYMVGDNPASDIIGAQNYGWFSCLVKTGVYNGGDDL---KECKPTLIVNDVFDAVTKI 320 (321)
T ss_pred heEEEEcCChhhhhhhHHhCCceEEEecccccCCCCCC---CCCCCCEEECCHHHHHHHh
Confidence 79999999999999999999999999999987765432 2367999999999998875
No 10
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=100.00 E-value=4.1e-37 Score=258.22 Aligned_cols=209 Identities=35% Similarity=0.494 Sum_probs=179.6
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHh-CCCCCCCCceechHHHHHHHHHhcCCCCCCEEEEEcCHHHHHHHHHcCCee
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFET-LGLTVTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDGILKELELAGFQY 80 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~-~G~~~~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~~~~~~~l~~~g~~~ 80 (257)
|+++|++++|+|||+++++++++++|.+ +|+++++++|+||+++++.||+++. +++++|++|+++++++|+..|++.
T Consensus 26 l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iits~~~~~~~l~~~~--~~~~v~v~G~~~~~~~l~~~g~~~ 103 (236)
T TIGR01460 26 LRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIITSGSVTKDLLRQRF--EGEKVYVIGVGELRESLEGLGFRN 103 (236)
T ss_pred HHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeeeHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHcCCcC
Confidence 6788999999999999999999999999 8999999999999999999998753 457899999999999999999863
Q ss_pred eCCCCCCCCccccCCCcccCCCCCccEEEEeccCCCCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHH
Q 025117 81 LGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMV 160 (257)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~aVv~~~d~~~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~ 160 (257)
...++. ...+.++.+++|+++.+..++|.++..+..++++ +++++|+||+|..++...+...++.|+++
T Consensus 104 ~~~~~~----------~~~~~~~~~~~vv~~~~~~~~~~~~~~a~~~l~~-~~~~~i~tN~d~~~~~~~g~~~~~~g~~~ 172 (236)
T TIGR01460 104 DFFDDI----------DHLAIEKIPAAVIVGEPSDFSYDELAKAAYLLAE-GDVPFIAANRDDLVRLGDGRFRPGAGAIA 172 (236)
T ss_pred cccCcc----------cccccCCCCeEEEECCCCCcCHHHHHHHHHHHhC-CCCeEEEECCCCCCCCCCCcEeecchHHH
Confidence 000000 0011234568999999999999999999988874 44899999999866655566789999999
Q ss_pred HHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCcE-EEEcCChhhHHHHHHHcCCeEEEEccC
Q 025117 161 GAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQI-CMVGDRLDTDILFGQNGGCKTLLVLSG 223 (257)
Q Consensus 161 ~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~-~~IGD~~~~Di~~A~~aG~~ti~V~~G 223 (257)
+.+..+.+.+....+||+|.+|+.++++++.+++++ +||||++.+||.+|+++|+++++|.||
T Consensus 173 ~~i~~~~g~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~~G~~~i~v~~G 236 (236)
T TIGR01460 173 AGIKELSGREPTVVGKPSPAIYRAALNLLQARPERRDVMVGDNLRTDILGAKNAGFDTLLVLTG 236 (236)
T ss_pred HHHHHHhCceeeeecCCCHHHHHHHHHHhCCCCccceEEECCCcHHHHHHHHHCCCcEEEEecC
Confidence 999999988877789999999999999999998887 999999779999999999999999987
No 11
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.97 E-value=6.7e-30 Score=215.40 Aligned_cols=199 Identities=21% Similarity=0.198 Sum_probs=160.2
Q ss_pred ChhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCC-CCCceechHHHHHHHHHhc----CCCCCCEEEEEcCHH-HHHHHH
Q 025117 1 MLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTV-TEEEIFASSFAAAAYLKSI----DFPKDKKVYVVGEDG-ILKELE 74 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~-~~~~i~ts~~~~~~~l~~~----~~~~~~~v~vlg~~~-~~~~l~ 74 (257)
+|+++|+++.|+|| +++++.++.++|+++|++. ..++|+||+.++..++.+. +. +.++++++|... ..+++.
T Consensus 35 ~L~~~G~~~~ivTN-~~~~~~~~~~~L~~~gl~~~~~~~Ii~s~~~~~~~l~~~~~~~~~-~~~~~~~vGd~~~d~~~~~ 112 (242)
T TIGR01459 35 KIIAQGKPVYFVSN-SPRNIFSLHKTLKSLGINADLPEMIISSGEIAVQMILESKKRFDI-RNGIIYLLGHLENDIINLM 112 (242)
T ss_pred HHHHCCCEEEEEeC-CCCChHHHHHHHHHCCCCccccceEEccHHHHHHHHHhhhhhccC-CCceEEEeCCcccchhhhc
Confidence 37889999999999 5678888889999999998 7899999999888888642 12 246799999865 355665
Q ss_pred HcCCeeeCCCCCCCCccccCCCcccCCCCCccEEEEecc--CCCCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcc
Q 025117 75 LAGFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFD--RYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQE 152 (257)
Q Consensus 75 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aVv~~~d--~~~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~ 152 (257)
..|+... ...+++++|+++.+ ..++|+.+..++..+.+ +|+++|+||+|..++. ..+.
T Consensus 113 ~~~~~~~------------------~~~~~~~~vvv~~~~~~~~~~~~~~~~l~~l~~-~g~~~i~tN~d~~~~~-~~~~ 172 (242)
T TIGR01459 113 QCYTTDD------------------ENKANASLITIYRSENEKLDLDEFDELFAPIVA-RKIPNICANPDRGINQ-HGIY 172 (242)
T ss_pred CCCcccc------------------CCcccCcEEEEcCCCcccCCHHHHHHHHHHHHh-CCCcEEEECCCEeccC-CCce
Confidence 5554321 11245788888865 45889999999988765 6888899999998874 4567
Q ss_pred cccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCC-CCcEEEEcCChhhHHHHHHHcCCeEEEEcc
Q 025117 153 WAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQ-KSQICMVGDRLDTDILFGQNGGCKTLLVLS 222 (257)
Q Consensus 153 ~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~-~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~ 222 (257)
.++.|.++..+..+ +.++...|||+|.+|+.++++++.. +++++||||++.+||.+|+++|+++++|+|
T Consensus 173 ~~~~g~~~~~i~~~-g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~~G~~~i~v~t 242 (242)
T TIGR01459 173 RYGAGYYAELIKQL-GGKVIYSGKPYPAIFHKALKECSNIPKNRMLMVGDSFYTDILGANRLGIDTALVLT 242 (242)
T ss_pred EecccHHHHHHHHh-CCcEecCCCCCHHHHHHHHHHcCCCCcccEEEECCCcHHHHHHHHHCCCeEEEEeC
Confidence 88999999888663 4566678999999999999999875 679999999988999999999999999985
No 12
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=99.86 E-value=1.4e-21 Score=163.63 Aligned_cols=217 Identities=22% Similarity=0.230 Sum_probs=169.6
Q ss_pred CCcEEEEeCCCCcCHHHHHHHHHh-CCCCCCCCceechHHHHHHHHHhcCCCCCCEEEEEcCHHHHHHHHHcCCeeeCCC
Q 025117 6 GKRLVFVTNNSTKSRKQYGKKFET-LGLTVTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDGILKELELAGFQYLGGP 84 (257)
Q Consensus 6 g~~~~~lTN~s~~~~~~~~~~L~~-~G~~~~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~~~~~~~l~~~g~~~~~~~ 84 (257)
.+|++||||++.-+....+++|++ +|++++++||+.|++..+.+..- +.++|+++|....++..+.+||+.+...
T Consensus 71 kIP~vfLTNGGg~~E~~rA~~lS~~Lgv~Vs~dqviqSHsP~r~l~~~----~~k~vLv~G~~~vr~vAegyGFk~Vvt~ 146 (389)
T KOG1618|consen 71 KIPFVFLTNGGGILESSRAQELSALLGVEVSADQVIQSHSPFRLLVEY----HYKRVLVVGQGSVREVAEGYGFKNVVTV 146 (389)
T ss_pred eccEEEEeCCCCcchhhHHHHHHHhhCCccCHHHHHhhcChHHHHhhh----hhceEEEecCCcHHHHhhccCccceeeH
Confidence 789999999999999999999986 99999999999999999887732 2378999999999999999999988654
Q ss_pred CCCCCcccc-CC----------Cc-c--cCCCCCccEEEEeccCCCCHHHHHHHHHHHHcCC-------------CceEE
Q 025117 85 EDGGKKIEL-KP----------GF-L--MEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENP-------------GCLFI 137 (257)
Q Consensus 85 ~~~~~~~~~-~~----------~~-~--~~~~~~~~aVv~~~d~~~~~~~~~~~~~~l~~~~-------------~~~~i 137 (257)
++.-..++. .+ .+ . .+....++||++-.|+.-.-.+++..+++++.++ .++++
T Consensus 147 D~l~k~f~~ldP~t~~~~~~k~~~~~R~~~~~r~ieAv~~~~dPv~W~~dlQli~D~l~snG~~gt~~~a~~~~Phipiy 226 (389)
T KOG1618|consen 147 DELAKYFPLLDPFTDLSRELKTTKLARDRELFRRIEAVLLLGDPVRWETDLQLIMDVLLSNGSPGTGRLATGPYPHIPIY 226 (389)
T ss_pred HHHHHhCCCcccccchhHhhhcccchhccccccceeEEEEecCchhhhhhHHHHHHHHhcCCCCCcccccCCCCCCCceE
Confidence 442111111 10 01 1 1225679999998887544456888888887622 23789
Q ss_pred EecCCCccccCCCcccccCchHHHHHHhc----cCCC--ccccCCCcHHHHHHHHHHh--------C-CCCCcEEEEcCC
Q 025117 138 ATNRDAVTHLTDAQEWAGGGSMVGAFVGS----TQRE--PLVVGKPSTFMMDYLANKF--------G-IQKSQICMVGDR 202 (257)
Q Consensus 138 ~tn~d~~~~~~~~~~~~~~g~~~~~i~~~----~~~~--~~~~gKP~p~~~~~~~~~~--------~-~~~~~~~~IGD~ 202 (257)
++|.|..|+..-.+.++|.|.|.-++++. +|.. ...+|||++-.|++|...+ + -++....||||+
T Consensus 227 ~sN~DLlW~~e~~lpR~G~GaF~l~lesiy~kltGk~L~~~t~GKPt~ltY~~A~~vl~~~ak~~~~~~~~k~lymvGDN 306 (389)
T KOG1618|consen 227 ASNMDLLWMAEYKLPRFGHGAFRLCLESIYQKLTGKPLRYTTLGKPTKLTYDYAEDVLRRQAKRRGGAAPIKKLYMVGDN 306 (389)
T ss_pred EecccccccccCCCccccchHHHHHHHHHHHHhcCCcccccccCCCceehHHhHHHHHHHHHHhhcccCCcceeeeecCC
Confidence 99999999877778899999997666644 3432 3688999999999885433 2 256789999999
Q ss_pred hhhHHHHHH---------------HcCCeEEEEccCCCC
Q 025117 203 LDTDILFGQ---------------NGGCKTLLVLSGVTS 226 (257)
Q Consensus 203 ~~~Di~~A~---------------~aG~~ti~V~~G~~~ 226 (257)
+.+||.+|+ +-||-+|+|.||.+.
T Consensus 307 P~sDv~GA~lf~~yap~~~~g~~~~~~w~SILV~TGV~~ 345 (389)
T KOG1618|consen 307 PMSDVRGANLFHQYAPELGAGGSANYGWISILVRTGVYN 345 (389)
T ss_pred CcccccccccccccccccccccccCCCceEEEEeeeeec
Confidence 999999998 789999999999887
No 13
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=99.82 E-value=4.4e-20 Score=127.45 Aligned_cols=74 Identities=35% Similarity=0.581 Sum_probs=67.9
Q ss_pred cCCCcHHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhH
Q 025117 174 VGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDF 249 (257)
Q Consensus 174 ~gKP~p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el 249 (257)
+|||+|.+|+.+++++++++++++||||++.+||++|+++|+++|+|.||.++.+++.. ....|||++++|.|+
T Consensus 2 ~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~~~~~~--~~~~pd~vv~~l~e~ 75 (75)
T PF13242_consen 2 CGKPSPGMLEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSPEDLEK--AEHKPDYVVDDLKEA 75 (75)
T ss_dssp CSTTSHHHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCCCGHHH--SSSTTSEEESSGGGH
T ss_pred CCCCcHHHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCHHHHhc--cCCCCCEEECCHHhC
Confidence 69999999999999999999999999999889999999999999999999988877642 236999999999986
No 14
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=99.79 E-value=4e-19 Score=129.48 Aligned_cols=77 Identities=53% Similarity=0.861 Sum_probs=67.3
Q ss_pred ChhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHHHHHHHHHhcCCCCCCEEEEEcCHHHHHHHHHcCCe
Q 025117 1 MLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDGILKELELAGFQ 79 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~~~~~~~l~~~g~~ 79 (257)
+|+++||+++|+||||++++++++++|+++||++++++|+||+++++.||+++ .++++||++|+++++++|+++|++
T Consensus 25 ~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~~~~~~~l~~~--~~~~~v~vlG~~~l~~~l~~~G~e 101 (101)
T PF13344_consen 25 ALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSGMAAAEYLKEH--KGGKKVYVLGSDGLREELREAGFE 101 (101)
T ss_dssp HHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHHHHHHHHHHHH--TTSSEEEEES-HHHHHHHHHTTEE
T ss_pred HHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChHHHHHHHHHhc--CCCCEEEEEcCHHHHHHHHHcCCC
Confidence 37899999999999999999999999999999999999999999999999985 346899999999999999999974
No 15
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.76 E-value=1.6e-18 Score=144.03 Aligned_cols=131 Identities=22% Similarity=0.195 Sum_probs=108.4
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCc
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQ 195 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~ 195 (257)
..|+.+.+++..|+..+..++|+||+..... ...+...|++.+|+.+.+..+. ...||+|..+..++++++++|++
T Consensus 89 ~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~-~~~l~~~gl~~~F~~i~g~~~~---~~~KP~P~~l~~~~~~~~~~~~~ 164 (220)
T COG0546 89 RLFPGVKELLAALKSAGYKLGIVTNKPEREL-DILLKALGLADYFDVIVGGDDV---PPPKPDPEPLLLLLEKLGLDPEE 164 (220)
T ss_pred ccCCCHHHHHHHHHhCCCeEEEEeCCcHHHH-HHHHHHhCCccccceEEcCCCC---CCCCcCHHHHHHHHHHhCCChhh
Confidence 5678889999999875446889999988653 3355668888888877763333 34899999999999999999889
Q ss_pred EEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHHHHHHh
Q 025117 196 ICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKAA 255 (257)
Q Consensus 196 ~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~~~l~~ 255 (257)
++||||+ ..||++|++||+.+++|.||+...+.+.. ..||++++++.||..++..
T Consensus 165 ~l~VGDs-~~Di~aA~~Ag~~~v~v~~g~~~~~~l~~----~~~d~vi~~~~el~~~l~~ 219 (220)
T COG0546 165 ALMVGDS-LNDILAAKAAGVPAVGVTWGYNSREELAQ----AGADVVIDSLAELLALLAE 219 (220)
T ss_pred eEEECCC-HHHHHHHHHcCCCEEEEECCCCCCcchhh----cCCCEEECCHHHHHHHHhc
Confidence 9999999 69999999999999999999864444443 6899999999999988764
No 16
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.73 E-value=7.8e-18 Score=138.31 Aligned_cols=130 Identities=22% Similarity=0.193 Sum_probs=103.7
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCc
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQ 195 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~ 195 (257)
..|+.+.+.+..|++.+...+|+||+..... ...+...|+..+|+.+.++. ....+||+|.+|..++++++++|++
T Consensus 75 ~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~-~~~l~~~~l~~~f~~i~~~~---~~~~~KP~~~~~~~~~~~~~~~~~~ 150 (205)
T TIGR01454 75 EVFPGVPELLAELRADGVGTAIATGKSGPRA-RSLLEALGLLPLFDHVIGSD---EVPRPKPAPDIVREALRLLDVPPED 150 (205)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEeCCchHHH-HHHHHHcCChhheeeEEecC---cCCCCCCChHHHHHHHHHcCCChhh
Confidence 4567788889999875446889999876442 22345566666666554433 3345899999999999999999999
Q ss_pred EEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHHHHHH
Q 025117 196 ICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKA 254 (257)
Q Consensus 196 ~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~~~l~ 254 (257)
|+||||+ ..|+.+|+++|+++++|.||..+.+++.. ..|+++++++.+|.+++.
T Consensus 151 ~l~igD~-~~Di~aA~~~Gi~~i~~~~g~~~~~~l~~----~~~~~~~~~~~~l~~~~~ 204 (205)
T TIGR01454 151 AVMVGDA-VTDLASARAAGTATVAALWGEGDAGELLA----ARPDFLLRKPQSLLALCR 204 (205)
T ss_pred eEEEcCC-HHHHHHHHHcCCeEEEEEecCCChhhhhh----cCCCeeeCCHHHHHHHhh
Confidence 9999999 59999999999999999999988776653 579999999999988764
No 17
>PRK06769 hypothetical protein; Validated
Probab=99.72 E-value=2.8e-17 Score=131.61 Aligned_cols=135 Identities=20% Similarity=0.224 Sum_probs=93.1
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCC-------cccccCchHHHHHHhcc-CCCccccCCCcHHHHHHHHH
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDA-------QEWAGGGSMVGAFVGST-QREPLVVGKPSTFMMDYLAN 187 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~-------~~~~~~g~~~~~i~~~~-~~~~~~~gKP~p~~~~~~~~ 187 (257)
..|+++.+.++.|++.+-.++|+||++........ +...|+..+ +.... ..+....+||+|.+|..+++
T Consensus 28 ~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~~~~~~~~~KP~p~~~~~~~~ 104 (173)
T PRK06769 28 TLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDI---YLCPHKHGDGCECRKPSTGMLLQAAE 104 (173)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEE---EECcCCCCCCCCCCCCCHHHHHHHHH
Confidence 35788999999998754458899998752210000 111121111 11111 12223458999999999999
Q ss_pred HhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhh--cCCCCCCCCcEEECChhhHHHHHH
Q 025117 188 KFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSML--QSPNNSIQPDFYTNKISDFLSLKA 254 (257)
Q Consensus 188 ~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~--~~~~~~~~pd~~~~~l~el~~~l~ 254 (257)
+++++|++|+||||+ .+|+.+|+++|+++|+|.||....... ........|+++++++.||.+++.
T Consensus 105 ~l~~~p~~~i~IGD~-~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~l~~~~~~~~~~~~~el~~~l~ 172 (173)
T PRK06769 105 KHGLDLTQCAVIGDR-WTDIVAAAKVNATTILVRTGAGYDALHTYRDKWAHIEPNYIAENFEDAVNWIL 172 (173)
T ss_pred HcCCCHHHeEEEcCC-HHHHHHHHHCCCeEEEEecCCCchhhhhhhcccccCCCcchhhCHHHHHHHHh
Confidence 999999999999999 599999999999999999987543110 000112579999999999998764
No 18
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.71 E-value=1.3e-17 Score=137.92 Aligned_cols=130 Identities=24% Similarity=0.261 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCcE
Q 025117 117 NYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQI 196 (257)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~ 196 (257)
.|+.+.+.+..|++.+-.+.|+||+..... ...+...|+..+|+.+.... ....+||+|.+|..++++++++|+++
T Consensus 83 ~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~-~~~l~~~gl~~~f~~i~~~~---~~~~~Kp~p~~~~~~~~~~~~~~~~~ 158 (214)
T PRK13288 83 EYETVYETLKTLKKQGYKLGIVTTKMRDTV-EMGLKLTGLDEFFDVVITLD---DVEHAKPDPEPVLKALELLGAKPEEA 158 (214)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEeCCCHHHH-HHHHHHcCChhceeEEEecC---cCCCCCCCcHHHHHHHHHcCCCHHHE
Confidence 567788899999864334788899876432 22345567666666555433 33458999999999999999999999
Q ss_pred EEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHHHHHHh
Q 025117 197 CMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKAA 255 (257)
Q Consensus 197 ~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~~~l~~ 255 (257)
+||||+ ..|+++|+++|+++++|.||....+++.. ..|+++++++.++.+++..
T Consensus 159 ~~iGDs-~~Di~aa~~aG~~~i~v~~g~~~~~~l~~----~~~~~~i~~~~~l~~~i~~ 212 (214)
T PRK13288 159 LMVGDN-HHDILAGKNAGTKTAGVAWTIKGREYLEQ----YKPDFMLDKMSDLLAIVGD 212 (214)
T ss_pred EEECCC-HHHHHHHHHCCCeEEEEcCCCCCHHHHhh----cCcCEEECCHHHHHHHHhh
Confidence 999999 59999999999999999999877666543 5799999999999998764
No 19
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.70 E-value=6.3e-17 Score=136.08 Aligned_cols=126 Identities=19% Similarity=0.147 Sum_probs=98.0
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCc
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQ 195 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~ 195 (257)
..|+.+.+.+..|++ +..++|+||++.. +...|+..+|+.+..+.... ..||+|.+|..++++++++|++
T Consensus 113 ~~~~gv~~~L~~L~~-~~~l~i~Tn~~~~------~~~~gl~~~fd~i~~~~~~~---~~KP~p~~~~~a~~~~~~~~~~ 182 (238)
T PRK10748 113 DVPQATHDTLKQLAK-KWPLVAITNGNAQ------PELFGLGDYFEFVLRAGPHG---RSKPFSDMYHLAAEKLNVPIGE 182 (238)
T ss_pred CCCccHHHHHHHHHc-CCCEEEEECCCch------HHHCCcHHhhceeEecccCC---cCCCcHHHHHHHHHHcCCChhH
Confidence 456788899999986 4568889997653 24567777887776544333 4899999999999999999999
Q ss_pred EEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHHHHH
Q 025117 196 ICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLK 253 (257)
Q Consensus 196 ~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~~~l 253 (257)
|+||||++.+||.+|+++||++|||..+........ .....|++.+.+|.||.++|
T Consensus 183 ~~~VGD~~~~Di~~A~~aG~~~i~v~~~~~~~~~~~--~~~~~p~~~i~~l~el~~~~ 238 (238)
T PRK10748 183 ILHVGDDLTTDVAGAIRCGMQACWINPENGDLMQTW--DSRLLPHIEISRLASLTSLI 238 (238)
T ss_pred EEEEcCCcHHHHHHHHHCCCeEEEEcCCCccccccc--cccCCCCEEECCHHHHHhhC
Confidence 999999976999999999999999987653311100 12257999999999998764
No 20
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.70 E-value=2.5e-17 Score=139.29 Aligned_cols=124 Identities=15% Similarity=0.040 Sum_probs=98.4
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCc
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQ 195 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~ 195 (257)
..|+.+.+.+..|++.+-.+.|+||+..... ...+...++..+|+.+..+.... .+||+|++|..++++++++|++
T Consensus 108 ~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~-~~~l~~~gl~~~Fd~iv~~~~~~---~~KP~p~~~~~a~~~~~~~~~~ 183 (248)
T PLN02770 108 KPLNGLYKLKKWIEDRGLKRAAVTNAPRENA-ELMISLLGLSDFFQAVIIGSECE---HAKPHPDPYLKALEVLKVSKDH 183 (248)
T ss_pred CcCccHHHHHHHHHHcCCeEEEEeCCCHHHH-HHHHHHcCChhhCcEEEecCcCC---CCCCChHHHHHHHHHhCCChhH
Confidence 3567888899999874445789999987543 33445667777777665544433 4899999999999999999999
Q ss_pred EEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhH
Q 025117 196 ICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDF 249 (257)
Q Consensus 196 ~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el 249 (257)
|+||||+ .+||++|+++|+++|+|.||. ..+.+.. ..|+++++++.|+
T Consensus 184 ~l~vgDs-~~Di~aA~~aGi~~i~v~~g~-~~~~l~~----~~a~~vi~~~~e~ 231 (248)
T PLN02770 184 TFVFEDS-VSGIKAGVAAGMPVVGLTTRN-PESLLME----AKPTFLIKDYEDP 231 (248)
T ss_pred EEEEcCC-HHHHHHHHHCCCEEEEEeCCC-CHHHHhh----cCCCEEeccchhh
Confidence 9999999 599999999999999999985 4444432 5799999999993
No 21
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.70 E-value=2.5e-17 Score=137.73 Aligned_cols=128 Identities=17% Similarity=0.146 Sum_probs=96.7
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCcE
Q 025117 117 NYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQI 196 (257)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~ 196 (257)
.|+.+.+.++.|++.+-.+.|+||+..... ...+...++..+|+.+... +....+||+|++|..+++++|++|++|
T Consensus 96 ~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~-~~~l~~~~l~~~f~~i~~~---~~~~~~KP~p~~~~~~~~~l~~~p~~~ 171 (229)
T PRK13226 96 LFDGVEGMLQRLECAGCVWGIVTNKPEYLA-RLILPQLGWEQRCAVLIGG---DTLAERKPHPLPLLVAAERIGVAPTDC 171 (229)
T ss_pred eCCCHHHHHHHHHHCCCeEEEECCCCHHHH-HHHHHHcCchhcccEEEec---CcCCCCCCCHHHHHHHHHHhCCChhhE
Confidence 467788888899874445679999876432 2233445555555544332 223358999999999999999999999
Q ss_pred EEEcCChhhHHHHHHHcCCeEEEEccCCCChh-hhcCCCCCCCCcEEECChhhHHHHH
Q 025117 197 CMVGDRLDTDILFGQNGGCKTLLVLSGVTSLS-MLQSPNNSIQPDFYTNKISDFLSLK 253 (257)
Q Consensus 197 ~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~-~~~~~~~~~~pd~~~~~l~el~~~l 253 (257)
+||||+ .+||++|+++|+++|+|.||..... .... ..|+++++++.||.+++
T Consensus 172 l~IGDs-~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~----~~~~~~i~~~~el~~~~ 224 (229)
T PRK13226 172 VYVGDD-ERDILAARAAGMPSVAALWGYRLHDDDPLA----WQADVLVEQPQLLWNPA 224 (229)
T ss_pred EEeCCC-HHHHHHHHHCCCcEEEEeecCCCCCcChhh----cCCCeeeCCHHHHHHHh
Confidence 999999 6999999999999999999986432 2221 57999999999998764
No 22
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.70 E-value=1.8e-17 Score=140.54 Aligned_cols=129 Identities=16% Similarity=0.096 Sum_probs=97.6
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHH-HHHHhccCCCccccCCCcHHHHHHHHHHhCCC-C
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMV-GAFVGSTQREPLVVGKPSTFMMDYLANKFGIQ-K 193 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~-~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~-~ 193 (257)
..|+.+.+.+..|++.+-.+.|+||...... ...+...|+..++ +.+.+. +....+||+|++|..+++++++. |
T Consensus 99 ~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~-~~~l~~~gl~~~f~d~ii~~---~~~~~~KP~p~~~~~a~~~l~~~~~ 174 (253)
T TIGR01422 99 SPIPGVIEVIAYLRARGIKIGSTTGYTREMM-DVVAPEAALQGYRPDYNVTT---DDVPAGRPAPWMALKNAIELGVYDV 174 (253)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEECCCcHHHH-HHHHHHHHhcCCCCceEEcc---ccCCCCCCCHHHHHHHHHHcCCCCc
Confidence 4567788899999874445788999876432 2223344554443 444333 33345899999999999999995 9
Q ss_pred CcEEEEcCChhhHHHHHHHcCCeEEEEccCCCC-----------------------hhhhcCCCCCCCCcEEECChhhHH
Q 025117 194 SQICMVGDRLDTDILFGQNGGCKTLLVLSGVTS-----------------------LSMLQSPNNSIQPDFYTNKISDFL 250 (257)
Q Consensus 194 ~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~-----------------------~~~~~~~~~~~~pd~~~~~l~el~ 250 (257)
++|+||||+ .+||++|+++||++|+|.||.+. .+.+.. ..||++++++.||.
T Consensus 175 ~~~l~IGDs-~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~v~~~~~el~ 249 (253)
T TIGR01422 175 AACVKVGDT-VPDIEEGRNAGMWTVGLILSSNELGLSEEEYRALDPAELEARRAEATARLKA----AGAHYVIDTLAELP 249 (253)
T ss_pred hheEEECCc-HHHHHHHHHCCCeEEEEecCCcccCCCHHHHHhCCHHHHHHHHHHHHHHHHh----cCCCEehhcHHHHH
Confidence 999999999 59999999999999999999862 234433 68999999999998
Q ss_pred HHH
Q 025117 251 SLK 253 (257)
Q Consensus 251 ~~l 253 (257)
+++
T Consensus 250 ~~~ 252 (253)
T TIGR01422 250 AVI 252 (253)
T ss_pred Hhh
Confidence 765
No 23
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.69 E-value=2.7e-17 Score=135.63 Aligned_cols=129 Identities=20% Similarity=0.280 Sum_probs=99.9
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCc
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQ 195 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~ 195 (257)
..|+.+.+.+..|++.+..+.|+||...... ...+...++..+|+.+.. .+....+||+|++|..++++++++|++
T Consensus 85 ~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~-~~~l~~~~l~~~f~~~~~---~~~~~~~Kp~p~~~~~~~~~~~~~~~~ 160 (213)
T TIGR01449 85 SVFPGVEATLGALRAKGLRLGLVTNKPTPLA-RPLLELLGLAKYFSVLIG---GDSLAQRKPHPDPLLLAAERLGVAPQQ 160 (213)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEeCCCHHHH-HHHHHHcCcHhhCcEEEe---cCCCCCCCCChHHHHHHHHHcCCChhH
Confidence 3467788889888864445888999876442 223455566556654433 333445899999999999999999999
Q ss_pred EEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHHHHH
Q 025117 196 ICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLK 253 (257)
Q Consensus 196 ~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~~~l 253 (257)
|+||||+ ..|+.+|+++|+.+|+|.||....+.+.. ..|+++++++.||..++
T Consensus 161 ~~~igDs-~~d~~aa~~aG~~~i~v~~g~~~~~~l~~----~~a~~~i~~~~~l~~~~ 213 (213)
T TIGR01449 161 MVYVGDS-RVDIQAARAAGCPSVLLTYGYRYGEAIDL----LPPDVLYDSLNELPPLL 213 (213)
T ss_pred eEEeCCC-HHHHHHHHHCCCeEEEEccCCCCCcchhh----cCCCeEeCCHHHHHhhC
Confidence 9999999 69999999999999999999876554432 47999999999998753
No 24
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.69 E-value=9.7e-17 Score=133.60 Aligned_cols=131 Identities=23% Similarity=0.247 Sum_probs=102.6
Q ss_pred CCCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCC
Q 025117 115 YFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKS 194 (257)
Q Consensus 115 ~~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~ 194 (257)
...|+.+...++.++.. -.++|+||...... ...+...|+..+|+.+..+.... ..||+|.+|+++++++|++|+
T Consensus 98 ~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~-~~~l~~~gl~~~Fd~v~~s~~~g---~~KP~~~~f~~~~~~~g~~p~ 172 (229)
T COG1011 98 LPDYPEALEALKELGKK-YKLGILTNGARPHQ-ERKLRQLGLLDYFDAVFISEDVG---VAKPDPEIFEYALEKLGVPPE 172 (229)
T ss_pred CccChhHHHHHHHHHhh-ccEEEEeCCChHHH-HHHHHHcCChhhhheEEEecccc---cCCCCcHHHHHHHHHcCCCcc
Confidence 35667777777777653 34788999755432 23445667778888887665444 589999999999999999999
Q ss_pred cEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHHHHHHh
Q 025117 195 QICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKAA 255 (257)
Q Consensus 195 ~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~~~l~~ 255 (257)
+++||||++.+||.+|+++||++||+..+.... .. ....|++.+.++.++.+++..
T Consensus 173 ~~l~VgD~~~~di~gA~~~G~~~vwi~~~~~~~--~~---~~~~~~~~i~~l~~l~~~~~~ 228 (229)
T COG1011 173 EALFVGDSLENDILGARALGMKTVWINRGGKPL--PD---ALEAPDYEISSLAELLDLLER 228 (229)
T ss_pred eEEEECCChhhhhHHHHhcCcEEEEECCCCCCC--CC---CccCCceEEcCHHHHHHHHhh
Confidence 999999999999999999999999998876543 11 115799999999999998764
No 25
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.69 E-value=3e-16 Score=125.99 Aligned_cols=129 Identities=18% Similarity=0.102 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCC-cccccCchHHHHH-----------Hhcc-CC-------CccccC
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDA-QEWAGGGSMVGAF-----------VGST-QR-------EPLVVG 175 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~-~~~~~~g~~~~~i-----------~~~~-~~-------~~~~~g 175 (257)
..|+.+.+++..|++.+-.++|+||+......... ....+...++..+ ..+. .. +....+
T Consensus 26 ~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 105 (176)
T TIGR00213 26 EFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVDLDGIYYCPHHPEGVEEFRQVCDCR 105 (176)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCCccEEEECCCCCcccccccCCCCCC
Confidence 34678889999998744457889999852110000 0001111122211 1110 00 123358
Q ss_pred CCcHHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeE-EEEccCCCChhhhcCCCCCCCCcEEECChhhHH
Q 025117 176 KPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKT-LLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFL 250 (257)
Q Consensus 176 KP~p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~t-i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~ 250 (257)
||+|.+|..++++++++|++|+||||+ .+||++|+++|+++ ++|.||....... ...|+++++++.||.
T Consensus 106 KP~p~~~~~a~~~~~~~~~~~v~VGDs-~~Di~aA~~aG~~~~i~v~~g~~~~~~~-----~~~ad~~i~~~~el~ 175 (176)
T TIGR00213 106 KPKPGMLLQARKELHIDMAQSYMVGDK-LEDMQAGVAAKVKTNVLVRTGKPITPEA-----ENIADWVLNSLADLP 175 (176)
T ss_pred CCCHHHHHHHHHHcCcChhhEEEEcCC-HHHHHHHHHCCCcEEEEEecCCcccccc-----cccCCEEeccHHHhh
Confidence 999999999999999999999999999 69999999999998 8999986532222 146999999999985
No 26
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.68 E-value=5.7e-17 Score=134.50 Aligned_cols=127 Identities=26% Similarity=0.257 Sum_probs=97.1
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCc
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQ 195 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~ 195 (257)
..|+++.+.+..|++.+..++|+||.+.... ...+...|+..+|+.+.... ....+||+|++|..+++++|++|++
T Consensus 94 ~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~-~~~l~~~~l~~~f~~i~~~~---~~~~~KP~~~~~~~~~~~~~~~~~~ 169 (221)
T TIGR02253 94 RVYPGVRDTLMELRESGYRLGIITDGLPVKQ-WEKLERLGVRDFFDAVITSE---EEGVEKPHPKIFYAALKRLGVKPEE 169 (221)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEeCCchHHH-HHHHHhCChHHhccEEEEec---cCCCCCCCHHHHHHHHHHcCCChhh
Confidence 3567788899999874445788999976432 22345566666666554433 3335899999999999999999999
Q ss_pred EEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhH
Q 025117 196 ICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDF 249 (257)
Q Consensus 196 ~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el 249 (257)
++||||++.+||.+|+++|+++|+|.+|........ ....|+++++++.||
T Consensus 170 ~~~igDs~~~di~~A~~aG~~~i~~~~~~~~~~~~~---~~~~~~~~i~~~~el 220 (221)
T TIGR02253 170 AVMVGDRLDKDIKGAKNLGMKTVWINQGKSSKMEDD---VYPYPDYEISSLREL 220 (221)
T ss_pred EEEECCChHHHHHHHHHCCCEEEEECCCCCcccccc---cccCCCeeeCcHHhh
Confidence 999999966899999999999999999876443221 124689999999887
No 27
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.67 E-value=6.6e-17 Score=134.11 Aligned_cols=129 Identities=19% Similarity=0.204 Sum_probs=100.1
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCc--hHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCC-
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGG--SMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQ- 192 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g--~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~- 192 (257)
..|+.+.+.+..|++.+-.+.|+||...... ...+...++. .+|+.+.+... ...+||+|++|..+++++++.
T Consensus 87 ~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~-~~~l~~~~l~~~~~f~~i~~~~~---~~~~KP~p~~~~~a~~~~~~~~ 162 (220)
T TIGR03351 87 VALPGAEEAFRSLRSSGIKVALTTGFDRDTA-ERLLEKLGWTVGDDVDAVVCPSD---VAAGRPAPDLILRAMELTGVQD 162 (220)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCCchHHH-HHHHHHhhhhhhccCCEEEcCCc---CCCCCCCHHHHHHHHHHcCCCC
Confidence 4566788899999874445789999887542 2233445554 55555544433 334899999999999999997
Q ss_pred CCcEEEEcCChhhHHHHHHHcCCeE-EEEccCCCChhhhcCCCCCCCCcEEECChhhHHHHH
Q 025117 193 KSQICMVGDRLDTDILFGQNGGCKT-LLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLK 253 (257)
Q Consensus 193 ~~~~~~IGD~~~~Di~~A~~aG~~t-i~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~~~l 253 (257)
|++|+||||+ .+||++|+++||.+ +++.+|....+.+.. ..|+++++++.+|.+++
T Consensus 163 ~~~~~~igD~-~~Di~aa~~aG~~~~i~~~~g~~~~~~~~~----~~~~~~i~~~~~l~~~~ 219 (220)
T TIGR03351 163 VQSVAVAGDT-PNDLEAGINAGAGAVVGVLTGAHDAEELSR----HPHTHVLDSVADLPALL 219 (220)
T ss_pred hhHeEEeCCC-HHHHHHHHHCCCCeEEEEecCCCcHHHHhh----cCCceeecCHHHHHHhh
Confidence 7999999999 59999999999999 999999877766643 57999999999998765
No 28
>PRK09449 dUMP phosphatase; Provisional
Probab=99.67 E-value=1.4e-16 Score=132.59 Aligned_cols=128 Identities=25% Similarity=0.243 Sum_probs=96.8
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCC-CC
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQ-KS 194 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~-~~ 194 (257)
..|+.+.+.+..|++ +..+.|+||...... ...+...|+..+|+.+..+.. ....||+|++|..+++++|+. ++
T Consensus 95 ~~~~g~~~~L~~L~~-~~~~~i~Tn~~~~~~-~~~l~~~~l~~~fd~v~~~~~---~~~~KP~p~~~~~~~~~~~~~~~~ 169 (224)
T PRK09449 95 TPLPGAVELLNALRG-KVKMGIITNGFTELQ-QVRLERTGLRDYFDLLVISEQ---VGVAKPDVAIFDYALEQMGNPDRS 169 (224)
T ss_pred ccCccHHHHHHHHHh-CCeEEEEeCCcHHHH-HHHHHhCChHHHcCEEEEECc---cCCCCCCHHHHHHHHHHcCCCCcc
Confidence 356788889999984 456789999876432 223455666667766654433 334899999999999999985 58
Q ss_pred cEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHHHHHH
Q 025117 195 QICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKA 254 (257)
Q Consensus 195 ~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~~~l~ 254 (257)
+|+||||++.+||++|+++||+++++.++... ... ...|+++++++.||.+++.
T Consensus 170 ~~~~vgD~~~~Di~~A~~aG~~~i~~~~~~~~--~~~----~~~~~~~i~~~~el~~~l~ 223 (224)
T PRK09449 170 RVLMVGDNLHSDILGGINAGIDTCWLNAHGRE--QPE----GIAPTYQVSSLSELEQLLC 223 (224)
T ss_pred cEEEEcCCcHHHHHHHHHCCCcEEEECCCCCC--CCC----CCCCeEEECCHHHHHHHHh
Confidence 99999999657999999999999999864321 111 2469999999999998875
No 29
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.66 E-value=1.3e-16 Score=132.38 Aligned_cols=126 Identities=19% Similarity=0.217 Sum_probs=98.8
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHh-CCCCCc
Q 025117 117 NYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKF-GIQKSQ 195 (257)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~-~~~~~~ 195 (257)
.++.+.+.+..+++. ....|+||...... ...+...++..+|+.+..+.. ....||+|.+|..+++++ +++|++
T Consensus 98 ~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~-~~~l~~~~l~~~fd~i~~~~~---~~~~KP~~~~~~~~~~~~~~~~~~~ 172 (224)
T TIGR02254 98 LLPGAFELMENLQQK-FRLYIVTNGVRETQ-YKRLRKSGLFPFFDDIFVSED---AGIQKPDKEIFNYALERMPKFSKEE 172 (224)
T ss_pred eCccHHHHHHHHHhc-CcEEEEeCCchHHH-HHHHHHCCcHhhcCEEEEcCc---cCCCCCCHHHHHHHHHHhcCCCchh
Confidence 456778888888875 67889999876442 223455677777776655433 335899999999999999 999999
Q ss_pred EEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHHHHH
Q 025117 196 ICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLK 253 (257)
Q Consensus 196 ~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~~~l 253 (257)
|+||||++.+|+++|+++||.+|++.+|..... . ...|+++++++.||.+++
T Consensus 173 ~v~igD~~~~di~~A~~~G~~~i~~~~~~~~~~--~----~~~~~~~~~~~~el~~~~ 224 (224)
T TIGR02254 173 VLMIGDSLTADIKGGQNAGLDTCWMNPDMHPNP--D----DIIPTYEIRSLEELYEIL 224 (224)
T ss_pred eEEECCCcHHHHHHHHHCCCcEEEECCCCCCCC--C----CCCCceEECCHHHHHhhC
Confidence 999999954799999999999999998765421 1 257899999999998764
No 30
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.66 E-value=2e-16 Score=134.48 Aligned_cols=125 Identities=16% Similarity=0.212 Sum_probs=97.9
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCcE
Q 025117 117 NYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQI 196 (257)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~ 196 (257)
.|+.+.+.+..|++.+-..+|+||+..... ...+...|+..+|+.+.++.. ...+||+|++|..++++++++|++|
T Consensus 110 l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~-~~~l~~~gl~~~Fd~ii~~~d---~~~~KP~Pe~~~~a~~~l~~~p~~~ 185 (260)
T PLN03243 110 LRPGSREFVQALKKHEIPIAVASTRPRRYL-ERAIEAVGMEGFFSVVLAAED---VYRGKPDPEMFMYAAERLGFIPERC 185 (260)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEeCcCHHHH-HHHHHHcCCHhhCcEEEeccc---CCCCCCCHHHHHHHHHHhCCChHHe
Confidence 467888999999874445889999876442 234455677667666655433 3458999999999999999999999
Q ss_pred EEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHHHHH
Q 025117 197 CMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLK 253 (257)
Q Consensus 197 ~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~~~l 253 (257)
+||||+ .+||++|+++||++|+|. |......+ ..|+++++++.||..+.
T Consensus 186 l~IgDs-~~Di~aA~~aG~~~i~v~-g~~~~~~l------~~ad~vi~~~~el~~~~ 234 (260)
T PLN03243 186 IVFGNS-NSSVEAAHDGCMKCVAVA-GKHPVYEL------SAGDLVVRRLDDLSVVD 234 (260)
T ss_pred EEEcCC-HHHHHHHHHcCCEEEEEe-cCCchhhh------ccCCEEeCCHHHHHHHH
Confidence 999999 699999999999999996 65554433 25899999999997653
No 31
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.65 E-value=1.9e-16 Score=135.42 Aligned_cols=131 Identities=17% Similarity=0.095 Sum_probs=96.7
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchH-HHHHHhccCCCccccCCCcHHHHHHHHHHhCCC-C
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSM-VGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQ-K 193 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~-~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~-~ 193 (257)
..|+.+.+.+..|++.+-.+.|+||...... ...+...++..+ ++.+.++ +....+||+|++|..+++++++. |
T Consensus 101 ~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~-~~~l~~~~l~~~~~d~i~~~---~~~~~~KP~p~~~~~a~~~l~~~~~ 176 (267)
T PRK13478 101 TPIPGVLEVIAALRARGIKIGSTTGYTREMM-DVVVPLAAAQGYRPDHVVTT---DDVPAGRPYPWMALKNAIELGVYDV 176 (267)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEcCCcHHHH-HHHHHHHhhcCCCceEEEcC---CcCCCCCCChHHHHHHHHHcCCCCC
Confidence 3567788899999875445788999877432 112222333333 2433333 33345899999999999999996 6
Q ss_pred CcEEEEcCChhhHHHHHHHcCCeEEEEccCCCC-----------------------hhhhcCCCCCCCCcEEECChhhHH
Q 025117 194 SQICMVGDRLDTDILFGQNGGCKTLLVLSGVTS-----------------------LSMLQSPNNSIQPDFYTNKISDFL 250 (257)
Q Consensus 194 ~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~-----------------------~~~~~~~~~~~~pd~~~~~l~el~ 250 (257)
++|+||||+ .+||++|+++|+++|+|.||.+. .+.+.. ..|+++++++.+|.
T Consensus 177 ~e~l~IGDs-~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~a~~vi~~~~~l~ 251 (267)
T PRK13478 177 AACVKVDDT-VPGIEEGLNAGMWTVGVILSGNELGLSEEEYQALSAAELAARRERARARLRA----AGAHYVIDTIADLP 251 (267)
T ss_pred cceEEEcCc-HHHHHHHHHCCCEEEEEccCcccccCCHHHHHhcCHHHHHHHHHHHHHHHHH----cCCCeehhhHHHHH
Confidence 999999999 59999999999999999999863 133433 57999999999999
Q ss_pred HHHHh
Q 025117 251 SLKAA 255 (257)
Q Consensus 251 ~~l~~ 255 (257)
+++..
T Consensus 252 ~~l~~ 256 (267)
T PRK13478 252 AVIAD 256 (267)
T ss_pred HHHHH
Confidence 87753
No 32
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.63 E-value=4.9e-16 Score=133.13 Aligned_cols=130 Identities=17% Similarity=0.201 Sum_probs=100.8
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCc
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQ 195 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~ 195 (257)
..|+.+.+.+..|+..+-.++|+||...... ...+...+++.+|+.+.+. +....+||+|.+|+.+++++|++|++
T Consensus 101 ~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~-~~~l~~~~i~~~f~~i~~~---d~~~~~Kp~p~~~~~~~~~~g~~~~~ 176 (272)
T PRK13223 101 VVYPGVRDTLKWLKKQGVEMALITNKPERFV-APLLDQMKIGRYFRWIIGG---DTLPQKKPDPAALLFVMKMAGVPPSQ 176 (272)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEECCcHHHH-HHHHHHcCcHhhCeEEEec---CCCCCCCCCcHHHHHHHHHhCCChhH
Confidence 3567788899999864445788899866432 2233345666666554333 22334899999999999999999999
Q ss_pred EEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHHHHHH
Q 025117 196 ICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKA 254 (257)
Q Consensus 196 ~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~~~l~ 254 (257)
|+||||+ ..||++|+++|+++++|.+|......+.. ..|+++++++.+|.+++.
T Consensus 177 ~l~IGD~-~~Di~aA~~aGi~~i~v~~G~~~~~~l~~----~~~~~vi~~l~el~~~~~ 230 (272)
T PRK13223 177 SLFVGDS-RSDVLAAKAAGVQCVALSYGYNHGRPIAE----ESPALVIDDLRALLPGCA 230 (272)
T ss_pred EEEECCC-HHHHHHHHHCCCeEEEEecCCCCchhhhh----cCCCEEECCHHHHHHHHh
Confidence 9999999 69999999999999999999876665543 479999999999987755
No 33
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.62 E-value=1e-15 Score=127.32 Aligned_cols=133 Identities=20% Similarity=0.239 Sum_probs=101.4
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCc
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQ 195 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~ 195 (257)
..++.+.+.+..+++.+..+.|+||...... ...+...++..+|+.+. +.+....+||+|.+|+.++++++++|++
T Consensus 93 ~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~-~~~l~~~~l~~~f~~~~---~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 168 (226)
T PRK13222 93 RLYPGVKETLAALKAAGYPLAVVTNKPTPFV-APLLEALGIADYFSVVI---GGDSLPNKKPDPAPLLLACEKLGLDPEE 168 (226)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEeCCCHHHH-HHHHHHcCCccCccEEE---cCCCCCCCCcChHHHHHHHHHcCCChhh
Confidence 3566788888888864445778899876432 22333445544555433 3333445899999999999999999999
Q ss_pred EEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHHHHHHhhC
Q 025117 196 ICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKAAAV 257 (257)
Q Consensus 196 ~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~~~l~~~~ 257 (257)
|+||||+ ..|+.+|+++|+.+|+|.+|.....+... ..|+++++++.+|..++..++
T Consensus 169 ~i~igD~-~~Di~~a~~~g~~~i~v~~g~~~~~~~~~----~~~~~~i~~~~~l~~~l~~~~ 225 (226)
T PRK13222 169 MLFVGDS-RNDIQAARAAGCPSVGVTYGYNYGEPIAL----SEPDVVIDHFAELLPLLGLAL 225 (226)
T ss_pred eEEECCC-HHHHHHHHHCCCcEEEECcCCCCccchhh----cCCCEEECCHHHHHHHHHHhc
Confidence 9999999 69999999999999999999765444432 579999999999999887653
No 34
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.62 E-value=1.1e-15 Score=135.20 Aligned_cols=123 Identities=15% Similarity=0.106 Sum_probs=97.9
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCc
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQ 195 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~ 195 (257)
..|+.+.+.+..|++.+-.+.|+||+..... ...+...|+..+|+.+...... ..+||+|++|..+++++|++|++
T Consensus 216 ~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~-~~~L~~lgL~~yFd~Iv~sddv---~~~KP~Peifl~A~~~lgl~Pee 291 (381)
T PLN02575 216 RLRTGSQEFVNVLMNYKIPMALVSTRPRKTL-ENAIGSIGIRGFFSVIVAAEDV---YRGKPDPEMFIYAAQLLNFIPER 291 (381)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCCCHHHH-HHHHHHcCCHHHceEEEecCcC---CCCCCCHHHHHHHHHHcCCCccc
Confidence 3577889999999875445889999987543 3344567777787776654443 34899999999999999999999
Q ss_pred EEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHH
Q 025117 196 ICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFL 250 (257)
Q Consensus 196 ~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~ 250 (257)
|+||||+ ..||++|+++||++|+|.++. ....+ ..++++++++.||.
T Consensus 292 cl~IGDS-~~DIeAAk~AGm~~IgV~~~~-~~~~l------~~Ad~iI~s~~EL~ 338 (381)
T PLN02575 292 CIVFGNS-NQTVEAAHDARMKCVAVASKH-PIYEL------GAADLVVRRLDELS 338 (381)
T ss_pred EEEEcCC-HHHHHHHHHcCCEEEEECCCC-ChhHh------cCCCEEECCHHHHH
Confidence 9999999 599999999999999998764 33322 25899999999983
No 35
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.62 E-value=1.2e-15 Score=122.97 Aligned_cols=132 Identities=15% Similarity=0.141 Sum_probs=92.4
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCC--------------CcccccCchHHHHHHhcc--CCCccccCCCcH
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTD--------------AQEWAGGGSMVGAFVGST--QREPLVVGKPST 179 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~--------------~~~~~~~g~~~~~i~~~~--~~~~~~~gKP~p 179 (257)
..|+.+.+.+..|++.+-.++|+||+........ .+...|+ .++.+..+. ..+....+||+|
T Consensus 29 ~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~--~f~~i~~~~~~~~~~~~~~KP~p 106 (181)
T PRK08942 29 IPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGG--RLDGIYYCPHHPEDGCDCRKPKP 106 (181)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCC--ccceEEECCCCCCCCCcCCCCCH
Confidence 4567788899999875445788999874210000 0001111 122222111 112234589999
Q ss_pred HHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCC--cEEECChhhHHHHHHh
Q 025117 180 FMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQP--DFYTNKISDFLSLKAA 255 (257)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~p--d~~~~~l~el~~~l~~ 255 (257)
.+|..++++++++|++++||||+ .+|+.+|+++|+.++++.+|........ ..| +++++++.++.+++.+
T Consensus 107 ~~~~~~~~~l~~~~~~~~~VgDs-~~Di~~A~~aG~~~i~v~~g~~~~~~~~-----~~~~~~~ii~~l~el~~~l~~ 178 (181)
T PRK08942 107 GMLLSIAERLNIDLAGSPMVGDS-LRDLQAAAAAGVTPVLVRTGKGVTTLAE-----GAAPGTWVLDSLADLPQALKK 178 (181)
T ss_pred HHHHHHHHHcCCChhhEEEEeCC-HHHHHHHHHCCCeEEEEcCCCCchhhhc-----ccCCCceeecCHHHHHHHHHh
Confidence 99999999999999999999999 5999999999999999999876433222 345 9999999999988764
No 36
>PLN02811 hydrolase
Probab=99.60 E-value=7.4e-16 Score=128.04 Aligned_cols=127 Identities=15% Similarity=0.080 Sum_probs=91.3
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhC---CC
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFG---IQ 192 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~---~~ 192 (257)
..|+.+.+.++.|++.+..+.|+||..............++..+|+.+.+.... ....+||+|++|..++++++ ++
T Consensus 78 ~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~~~-~~~~~KP~p~~~~~a~~~~~~~~~~ 156 (220)
T PLN02811 78 DLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDP-EVKQGKPAPDIFLAAARRFEDGPVD 156 (220)
T ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECChh-hccCCCCCcHHHHHHHHHhCCCCCC
Confidence 347788899999987544578889986532111111222333344433332200 33458999999999999996 99
Q ss_pred CCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHH
Q 025117 193 KSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFL 250 (257)
Q Consensus 193 ~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~ 250 (257)
|++|+||||+ .+|+++|+++|+++|+|.+|....... ..|+++++++.|+.
T Consensus 157 ~~~~v~IgDs-~~di~aA~~aG~~~i~v~~~~~~~~~~------~~~d~vi~~~~e~~ 207 (220)
T PLN02811 157 PGKVLVFEDA-PSGVEAAKNAGMSVVMVPDPRLDKSYC------KGADQVLSSLLDFK 207 (220)
T ss_pred ccceEEEecc-HhhHHHHHHCCCeEEEEeCCCCcHhhh------hchhhHhcCHhhCC
Confidence 9999999999 599999999999999999987655432 36899999998863
No 37
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.59 E-value=1.1e-15 Score=126.98 Aligned_cols=127 Identities=10% Similarity=0.031 Sum_probs=97.8
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCc
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQ 195 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~ 195 (257)
..|+++.+.+..+++.+...+|+||...... ...+...++..+|+.+... +....+||+|++|..+++++|++|++
T Consensus 92 ~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~-~~~l~~~~l~~~f~~~~~~---~~~~~~Kp~~~~~~~~~~~~~~~~~~ 167 (222)
T PRK10826 92 PLLPGVREALALCKAQGLKIGLASASPLHML-EAVLTMFDLRDYFDALASA---EKLPYSKPHPEVYLNCAAKLGVDPLT 167 (222)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEeCCcHHHH-HHHHHhCcchhcccEEEEc---ccCCCCCCCHHHHHHHHHHcCCCHHH
Confidence 4678889999999874445788899776432 2233456666666655443 33445999999999999999999999
Q ss_pred EEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHHHH
Q 025117 196 ICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSL 252 (257)
Q Consensus 196 ~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~~~ 252 (257)
|+||||++ .|+++|+++|+++|+|.++....+... ..+++++.++.||..+
T Consensus 168 ~~~igDs~-~Di~aA~~aG~~~i~v~~~~~~~~~~~-----~~~~~~~~~~~dl~~~ 218 (222)
T PRK10826 168 CVALEDSF-NGMIAAKAARMRSIVVPAPEQQNDPRW-----ALADVKLESLTELTAA 218 (222)
T ss_pred eEEEcCCh-hhHHHHHHcCCEEEEecCCccCchhhh-----hhhheeccCHHHHhhh
Confidence 99999995 999999999999999998865543222 3589999999998653
No 38
>PRK11587 putative phosphatase; Provisional
Probab=99.58 E-value=1.8e-15 Score=125.48 Aligned_cols=122 Identities=17% Similarity=0.134 Sum_probs=89.6
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCc
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQ 195 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~ 195 (257)
..|+.+.+.+..|++.+-..+|+||+..... ...+...++. +++.+.+. +.....||+|++|..+++++|++|++
T Consensus 83 ~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~-~~~l~~~~l~-~~~~i~~~---~~~~~~KP~p~~~~~~~~~~g~~p~~ 157 (218)
T PRK11587 83 TALPGAIALLNHLNKLGIPWAIVTSGSVPVA-SARHKAAGLP-APEVFVTA---ERVKRGKPEPDAYLLGAQLLGLAPQE 157 (218)
T ss_pred eeCcCHHHHHHHHHHcCCcEEEEcCCCchHH-HHHHHhcCCC-CccEEEEH---HHhcCCCCCcHHHHHHHHHcCCCccc
Confidence 3577888999999875445888899876432 1122334443 22333222 22334899999999999999999999
Q ss_pred EEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHH
Q 025117 196 ICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFL 250 (257)
Q Consensus 196 ~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~ 250 (257)
|+||||+ ..|+++|+++|+.+|+|.+|... ... ..|+++++++.||.
T Consensus 158 ~l~igDs-~~di~aA~~aG~~~i~v~~~~~~-~~~------~~~~~~~~~~~el~ 204 (218)
T PRK11587 158 CVVVEDA-PAGVLSGLAAGCHVIAVNAPADT-PRL------DEVDLVLHSLEQLT 204 (218)
T ss_pred EEEEecc-hhhhHHHHHCCCEEEEECCCCch-hhh------ccCCEEecchhhee
Confidence 9999999 69999999999999999887532 211 36899999999874
No 39
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.57 E-value=4.3e-15 Score=122.68 Aligned_cols=106 Identities=23% Similarity=0.213 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHcCCC-ceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCcEE
Q 025117 119 YKVQYGTLCIRENPG-CLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQIC 197 (257)
Q Consensus 119 ~~~~~~~~~l~~~~~-~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~ 197 (257)
+.+++++..+|+ +| ++++.||-|.... ..+..+++..+|+.+..++... ..||+|.+|+.+++++++.|++|+
T Consensus 116 ~~~~~~lq~lR~-~g~~l~iisN~d~r~~--~~l~~~~l~~~fD~vv~S~e~g---~~KPDp~If~~al~~l~v~Pee~v 189 (237)
T KOG3085|consen 116 DGMQELLQKLRK-KGTILGIISNFDDRLR--LLLLPLGLSAYFDFVVESCEVG---LEKPDPRIFQLALERLGVKPEECV 189 (237)
T ss_pred cHHHHHHHHHHh-CCeEEEEecCCcHHHH--HHhhccCHHHhhhhhhhhhhhc---cCCCChHHHHHHHHHhCCChHHeE
Confidence 346678888887 55 5778899998664 3556678878898888766544 489999999999999999999999
Q ss_pred EEcCChhhHHHHHHHcCCeEEEEccCCCChhhh
Q 025117 198 MVGDRLDTDILFGQNGGCKTLLVLSGVTSLSML 230 (257)
Q Consensus 198 ~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~ 230 (257)
||||++.+|+++|+++||++++|-.........
T Consensus 190 hIgD~l~nD~~gA~~~G~~ailv~~~~~~~~~~ 222 (237)
T KOG3085|consen 190 HIGDLLENDYEGARNLGWHAILVDNSITALKEL 222 (237)
T ss_pred EecCccccccHhHHHcCCEEEEEccccchhhhh
Confidence 999999999999999999999999776554443
No 40
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.57 E-value=2.9e-14 Score=113.77 Aligned_cols=102 Identities=22% Similarity=0.198 Sum_probs=75.7
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCc-cccCCCcHHHHHHHHHHhCCCCC
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREP-LVVGKPSTFMMDYLANKFGIQKS 194 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~-~~~gKP~p~~~~~~~~~~~~~~~ 194 (257)
..|+.+.+++..|++.+..++|+||.+..... ..+....+... ....||+|.+|..++++++++++
T Consensus 43 ~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~-------------~~~~~~~gl~~~~~~~KP~p~~~~~~l~~~~~~~~ 109 (170)
T TIGR01668 43 EAYPALRDWIEELKAAGRKLLIVSNNAGEQRA-------------KAVEKALGIPVLPHAVKPPGCAFRRAHPEMGLTSE 109 (170)
T ss_pred CcChhHHHHHHHHHHcCCEEEEEeCCchHHHH-------------HHHHHHcCCEEEcCCCCCChHHHHHHHHHcCCCHH
Confidence 46788889999998744457889998631111 11111111111 12379999999999999999999
Q ss_pred cEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhh
Q 025117 195 QICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSML 230 (257)
Q Consensus 195 ~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~ 230 (257)
+++||||++.+|+.+|+++|+.+|+|.+|.++.+.+
T Consensus 110 ~~l~IGDs~~~Di~aA~~aGi~~i~v~~g~~~~~~~ 145 (170)
T TIGR01668 110 QVAVVGDRLFTDVMGGNRNGSYTILVEPLVHPDQWF 145 (170)
T ss_pred HEEEECCcchHHHHHHHHcCCeEEEEccCcCCcccc
Confidence 999999996689999999999999999998766543
No 41
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.56 E-value=2.4e-15 Score=125.33 Aligned_cols=107 Identities=10% Similarity=0.039 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCc
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQ 195 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~ 195 (257)
..|+.+.+.+..|++.+..++|+||+..... ...+...|+..+|+.+..+. ....+||+|++|..+++++|++|++
T Consensus 93 ~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~-~~~l~~~~l~~~fd~iv~s~---~~~~~KP~p~~~~~~~~~~~~~p~~ 168 (224)
T PRK14988 93 VLREDTVPFLEALKASGKRRILLTNAHPHNL-AVKLEHTGLDAHLDLLLSTH---TFGYPKEDQRLWQAVAEHTGLKAER 168 (224)
T ss_pred CcCCCHHHHHHHHHhCCCeEEEEeCcCHHHH-HHHHHHCCcHHHCCEEEEee---eCCCCCCCHHHHHHHHHHcCCChHH
Confidence 4567788899999874445789999766442 22334566666665554333 3334899999999999999999999
Q ss_pred EEEEcCChhhHHHHHHHcCCeE-EEEccCCCCh
Q 025117 196 ICMVGDRLDTDILFGQNGGCKT-LLVLSGVTSL 227 (257)
Q Consensus 196 ~~~IGD~~~~Di~~A~~aG~~t-i~V~~G~~~~ 227 (257)
|+||||+ ..|+++|+++||++ +.|.++.+..
T Consensus 169 ~l~igDs-~~di~aA~~aG~~~~~~v~~~~~~~ 200 (224)
T PRK14988 169 TLFIDDS-EPILDAAAQFGIRYCLGVTNPDSGI 200 (224)
T ss_pred EEEEcCC-HHHHHHHHHcCCeEEEEEeCCCCCc
Confidence 9999999 59999999999985 6788876543
No 42
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.55 E-value=1e-14 Score=124.83 Aligned_cols=129 Identities=19% Similarity=0.162 Sum_probs=100.5
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCc
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQ 195 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~ 195 (257)
..|+.+.+.+..|+..+-.+.|+||...... ...+...|+..+|+.+.. .+. .+|+|+.|..++++++++|++
T Consensus 142 ~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~-~~~L~~~gl~~~F~~vi~---~~~---~~~k~~~~~~~l~~~~~~p~~ 214 (273)
T PRK13225 142 QLFPGVADLLAQLRSRSLCLGILSSNSRQNI-EAFLQRQGLRSLFSVVQA---GTP---ILSKRRALSQLVAREGWQPAA 214 (273)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCCHHHH-HHHHHHcCChhheEEEEe---cCC---CCCCHHHHHHHHHHhCcChhH
Confidence 3567888999999864335778999887543 234455676666664422 222 245578999999999999999
Q ss_pred EEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHHHHHHhh
Q 025117 196 ICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKAAA 256 (257)
Q Consensus 196 ~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~~~l~~~ 256 (257)
|+||||+ ..||++|+++|+++|+|.+|....+++.. ..|+++++++.||++++.+.
T Consensus 215 ~l~IGDs-~~Di~aA~~AG~~~I~v~~g~~~~~~l~~----~~ad~~i~~~~eL~~~~~~~ 270 (273)
T PRK13225 215 VMYVGDE-TRDVEAARQVGLIAVAVTWGFNDRQSLVA----ACPDWLLETPSDLLQAVTQL 270 (273)
T ss_pred EEEECCC-HHHHHHHHHCCCeEEEEecCCCCHHHHHH----CCCCEEECCHHHHHHHHHHH
Confidence 9999999 69999999999999999999887766653 57999999999999987654
No 43
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.54 E-value=7.7e-15 Score=126.59 Aligned_cols=126 Identities=11% Similarity=-0.008 Sum_probs=91.4
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCc
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQ 195 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~ 195 (257)
..|+.+.+.+..|++.+-.++|+||....... ..+...+...++..+... +.+....+||+|++|..++++++++|++
T Consensus 144 ~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~-~~l~~~~~~~~~~~~~~v-~~~~~~~~KP~p~~~~~a~~~~~~~p~~ 221 (286)
T PLN02779 144 PLRPGVLRLMDEALAAGIKVAVCSTSNEKAVS-KIVNTLLGPERAQGLDVF-AGDDVPKKKPDPDIYNLAAETLGVDPSR 221 (286)
T ss_pred CchhhHHHHHHHHHHCCCeEEEEeCCCHHHHH-HHHHHhccccccCceEEE-eccccCCCCCCHHHHHHHHHHhCcChHH
Confidence 35778888998888744458889998664321 111111111122222222 2233345899999999999999999999
Q ss_pred EEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHH
Q 025117 196 ICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFL 250 (257)
Q Consensus 196 ~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~ 250 (257)
|+||||+ ..||++|+++||.+|+|.+|.+..+++ ..|+++++++.++.
T Consensus 222 ~l~IGDs-~~Di~aA~~aG~~~i~v~~g~~~~~~l------~~ad~vi~~~~~l~ 269 (286)
T PLN02779 222 CVVVEDS-VIGLQAAKAAGMRCIVTKSSYTADEDF------SGADAVFDCLGDVP 269 (286)
T ss_pred EEEEeCC-HHhHHHHHHcCCEEEEEccCCcccccc------CCCcEEECChhhcc
Confidence 9999999 599999999999999999997765443 26899999999985
No 44
>PLN02940 riboflavin kinase
Probab=99.54 E-value=6.9e-15 Score=131.65 Aligned_cols=124 Identities=15% Similarity=0.140 Sum_probs=95.1
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcc-cccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCC
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQE-WAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKS 194 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~-~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~ 194 (257)
..|+.+.+.++.|++.+-.+.|+||...... ...+. ..++..+|+.+.+.. ....+||+|++|..++++++++|+
T Consensus 93 ~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~-~~~l~~~~gl~~~Fd~ii~~d---~v~~~KP~p~~~~~a~~~lgv~p~ 168 (382)
T PLN02940 93 KALPGANRLIKHLKSHGVPMALASNSPRANI-EAKISCHQGWKESFSVIVGGD---EVEKGKPSPDIFLEAAKRLNVEPS 168 (382)
T ss_pred CCCcCHHHHHHHHHHCCCcEEEEeCCcHHHH-HHHHHhccChHhhCCEEEehh---hcCCCCCCHHHHHHHHHHcCCChh
Confidence 3467788899999875445889999876442 22222 456655666554433 334589999999999999999999
Q ss_pred cEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHH
Q 025117 195 QICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFL 250 (257)
Q Consensus 195 ~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~ 250 (257)
+|+||||+ .+||++|+++||++|+|.+|....... ..|+++++++.|+.
T Consensus 169 ~~l~VGDs-~~Di~aA~~aGi~~I~v~~g~~~~~~~------~~ad~~i~sl~el~ 217 (382)
T PLN02940 169 NCLVIEDS-LPGVMAGKAAGMEVIAVPSIPKQTHLY------SSADEVINSLLDLQ 217 (382)
T ss_pred HEEEEeCC-HHHHHHHHHcCCEEEEECCCCcchhhc------cCccEEeCCHhHcC
Confidence 99999999 599999999999999999986543221 46899999999875
No 45
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.53 E-value=1.2e-14 Score=118.96 Aligned_cols=110 Identities=15% Similarity=0.090 Sum_probs=82.4
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCcE
Q 025117 117 NYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQI 196 (257)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~ 196 (257)
.|+.+.+.++.+++.+..++|+||.+............++..+|+.+..+. ....+||+|++|+.+++++|++|++|
T Consensus 85 ~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~---~~~~~KP~p~~~~~~~~~~~~~p~~~ 161 (199)
T PRK09456 85 LRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQ---DLGMRKPEARIYQHVLQAEGFSAADA 161 (199)
T ss_pred cCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEec---ccCCCCCCHHHHHHHHHHcCCChhHe
Confidence 478889999999874445788999876431100011234555565555443 33458999999999999999999999
Q ss_pred EEEcCChhhHHHHHHHcCCeEEEEccCCCChhhh
Q 025117 197 CMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSML 230 (257)
Q Consensus 197 ~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~ 230 (257)
+||||+ .+||.+|+++||+++++.++..-.+.+
T Consensus 162 l~vgD~-~~di~aA~~aG~~~i~~~~~~~~~~~l 194 (199)
T PRK09456 162 VFFDDN-ADNIEAANALGITSILVTDKQTIPDYF 194 (199)
T ss_pred EEeCCC-HHHHHHHHHcCCEEEEecCCccHHHHH
Confidence 999999 599999999999999999876555444
No 46
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.53 E-value=1.2e-14 Score=118.65 Aligned_cols=104 Identities=17% Similarity=0.093 Sum_probs=82.3
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCc
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQ 195 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~ 195 (257)
..++.+.+++..|++.+-.++|+||.+.... ...+...|+..+|+.+..+... ..+||+|++|..++++++++|++
T Consensus 92 ~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~-~~~l~~~gl~~~fd~i~~s~~~---~~~KP~~~~~~~~~~~~~~~p~~ 167 (198)
T TIGR01428 92 PPHPDVPAGLRALKERGYRLAILSNGSPAML-KSLVKHAGLDDPFDAVLSADAV---RAYKPAPQVYQLALEALGVPPDE 167 (198)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEeCCCHHHH-HHHHHHCCChhhhheeEehhhc---CCCCCCHHHHHHHHHHhCCChhh
Confidence 4567888999999874345788999887542 2234456666677766554433 35899999999999999999999
Q ss_pred EEEEcCChhhHHHHHHHcCCeEEEEccCC
Q 025117 196 ICMVGDRLDTDILFGQNGGCKTLLVLSGV 224 (257)
Q Consensus 196 ~~~IGD~~~~Di~~A~~aG~~ti~V~~G~ 224 (257)
|+||||++ +|+.+|+++||++|+|..+.
T Consensus 168 ~~~vgD~~-~Di~~A~~~G~~~i~v~r~~ 195 (198)
T TIGR01428 168 VLFVASNP-WDLGGAKKFGFKTAWVNRPG 195 (198)
T ss_pred EEEEeCCH-HHHHHHHHCCCcEEEecCCC
Confidence 99999995 99999999999999998753
No 47
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.50 E-value=6.9e-15 Score=122.14 Aligned_cols=124 Identities=10% Similarity=0.014 Sum_probs=90.6
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHH-HHHhccCCCccccCCCcHHHHHHHHHHhCCCCCc
Q 025117 117 NYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVG-AFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQ 195 (257)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~-~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~ 195 (257)
.|+.+...+..|+ -.+.|+||.+.... ...+...++..+|+ .+.+..... .+||+|++|..++++++++|++
T Consensus 89 ~~~gv~~~L~~L~---~~~~ivTn~~~~~~-~~~l~~~~l~~~F~~~v~~~~~~~---~~KP~p~~~~~a~~~~~~~p~~ 161 (221)
T PRK10563 89 PIAGANALLESIT---VPMCVVSNGPVSKM-QHSLGKTGMLHYFPDKLFSGYDIQ---RWKPDPALMFHAAEAMNVNVEN 161 (221)
T ss_pred cCCCHHHHHHHcC---CCEEEEeCCcHHHH-HHHHHhcChHHhCcceEeeHHhcC---CCCCChHHHHHHHHHcCCCHHH
Confidence 4566777777663 46788899876432 22445567777774 333332222 4899999999999999999999
Q ss_pred EEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHHHHHH
Q 025117 196 ICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKA 254 (257)
Q Consensus 196 ~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~~~l~ 254 (257)
|+||||+ ..||++|+++|++++++.++.+... .. ..++.+++++.||.+++.
T Consensus 162 ~l~igDs-~~di~aA~~aG~~~i~~~~~~~~~~-~~-----~~~~~~~~~~~~l~~~~~ 213 (221)
T PRK10563 162 CILVDDS-SAGAQSGIAAGMEVFYFCADPHNKP-ID-----HPLVTTFTDLAQLPELWK 213 (221)
T ss_pred eEEEeCc-HhhHHHHHHCCCEEEEECCCCCCcc-hh-----hhhhHHHHHHHHHHHHHH
Confidence 9999999 5999999999999999987654422 11 345667889999887654
No 48
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.49 E-value=2e-14 Score=117.79 Aligned_cols=99 Identities=21% Similarity=0.143 Sum_probs=77.7
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCc
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQ 195 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~ 195 (257)
..|+.+.+++..|++.+..++|+||.+... ...+...|+..+|+.+..+.. ...+||+|.+|..+++++|++|++
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~--~~~l~~~~l~~~fd~i~~s~~---~~~~KP~~~~~~~~~~~~~~~~~~ 179 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDSRL--RGLLEALGLLEYFDFVVTSYE---VGAEKPDPKIFQEALERAGISPEE 179 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCchhH--HHHHHHCCcHHhcceEEeecc---cCCCCCCHHHHHHHHHHcCCChhH
Confidence 356788899999986444578999987633 223445666667766655443 335899999999999999999999
Q ss_pred EEEEcCChhhHHHHHHHcCCeEEE
Q 025117 196 ICMVGDRLDTDILFGQNGGCKTLL 219 (257)
Q Consensus 196 ~~~IGD~~~~Di~~A~~aG~~ti~ 219 (257)
++||||++.+||++|+++|+++||
T Consensus 180 ~~~IgD~~~~Di~~A~~aG~~~i~ 203 (203)
T TIGR02252 180 ALHIGDSLRNDYQGARAAGWRALL 203 (203)
T ss_pred EEEECCCchHHHHHHHHcCCeeeC
Confidence 999999966899999999999985
No 49
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.48 E-value=8.4e-14 Score=127.79 Aligned_cols=126 Identities=17% Similarity=0.155 Sum_probs=98.4
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCc
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQ 195 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~ 195 (257)
..|+.+.+.++.|++.+..+.|+||+..... ...+...++..+|+.+.+..... +||+|++|..++++++ |++
T Consensus 330 ~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~-~~~l~~~~l~~~f~~i~~~d~v~----~~~kP~~~~~al~~l~--~~~ 402 (459)
T PRK06698 330 ALYPNVKEIFTYIKENNCSIYIASNGLTEYL-RAIVSYYDLDQWVTETFSIEQIN----SLNKSDLVKSILNKYD--IKE 402 (459)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCchHHH-HHHHHHCCcHhhcceeEecCCCC----CCCCcHHHHHHHHhcC--cce
Confidence 4578888999999875455889999888653 33445667777777765543322 4788889999998864 689
Q ss_pred EEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHHHHHHh
Q 025117 196 ICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKAA 255 (257)
Q Consensus 196 ~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~~~l~~ 255 (257)
|+||||+ .+|+++|+++|+.+|+|.||....++. ..|+++++++.|+.+++..
T Consensus 403 ~v~VGDs-~~Di~aAk~AG~~~I~v~~~~~~~~~~------~~~d~~i~~l~el~~~l~~ 455 (459)
T PRK06698 403 AAVVGDR-LSDINAAKDNGLIAIGCNFDFAQEDEL------AQADIVIDDLLELKGILST 455 (459)
T ss_pred EEEEeCC-HHHHHHHHHCCCeEEEEeCCCCccccc------CCCCEEeCCHHHHHHHHHH
Confidence 9999999 599999999999999999987654432 3699999999999998765
No 50
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.46 E-value=4.1e-14 Score=110.26 Aligned_cols=106 Identities=18% Similarity=0.213 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCcccc--------------CCCcccccCchHHHHHHhccC-CCccccCCCcHH
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHL--------------TDAQEWAGGGSMVGAFVGSTQ-REPLVVGKPSTF 180 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~--------------~~~~~~~~~g~~~~~i~~~~~-~~~~~~gKP~p~ 180 (257)
..|+.+.++++.|++.+..++|+||++..... ...+...++.. ...+....+ .+....+||+|+
T Consensus 27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~~~~~KP~~~ 105 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAV-DGVLFCPHHPADNCSCRKPKPG 105 (147)
T ss_pred EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCce-eEEEECCCCCCCCCCCCCCCHH
Confidence 35778889999998755557889998752110 00011112110 000111111 112234799999
Q ss_pred HHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccC
Q 025117 181 MMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSG 223 (257)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G 223 (257)
+|+.++++++++|++|+||||+ ..||++|+++|+++|||..|
T Consensus 106 ~~~~~~~~~~~~~~e~i~IGDs-~~Di~~A~~~Gi~~v~i~~~ 147 (147)
T TIGR01656 106 LILEALKRLGVDASRSLVVGDR-LRDLQAARNAGLAAVLLVDG 147 (147)
T ss_pred HHHHHHHHcCCChHHEEEEcCC-HHHHHHHHHCCCCEEEecCC
Confidence 9999999999999999999999 79999999999999999865
No 51
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.45 E-value=3.4e-13 Score=104.00 Aligned_cols=100 Identities=23% Similarity=0.286 Sum_probs=70.5
Q ss_pred EEeccCCCCHHHHHHHHHHHHcCCCc-eEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHH
Q 025117 109 VVGFDRYFNYYKVQYGTLCIRENPGC-LFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLAN 187 (257)
Q Consensus 109 v~~~d~~~~~~~~~~~~~~l~~~~~~-~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~ 187 (257)
++.++..-.-+.+..=+..++. .|+ .+|+||.... ........+|.- ++ ...+||.+.-|..|++
T Consensus 39 Lv~wd~~~~tpe~~~W~~e~k~-~gi~v~vvSNn~e~-RV~~~~~~l~v~----fi--------~~A~KP~~~~fr~Al~ 104 (175)
T COG2179 39 LVPWDNPDATPELRAWLAELKE-AGIKVVVVSNNKES-RVARAAEKLGVP----FI--------YRAKKPFGRAFRRALK 104 (175)
T ss_pred eecccCCCCCHHHHHHHHHHHh-cCCEEEEEeCCCHH-HHHhhhhhcCCc----ee--------ecccCccHHHHHHHHH
Confidence 4455544445666666667776 455 5666775442 111111222211 11 2248999999999999
Q ss_pred HhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEcc
Q 025117 188 KFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLS 222 (257)
Q Consensus 188 ~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~ 222 (257)
+++++|++|+||||++.|||.+|+++||+||+|..
T Consensus 105 ~m~l~~~~vvmVGDqL~TDVlggnr~G~~tIlV~P 139 (175)
T COG2179 105 EMNLPPEEVVMVGDQLFTDVLGGNRAGMRTILVEP 139 (175)
T ss_pred HcCCChhHEEEEcchhhhhhhcccccCcEEEEEEE
Confidence 99999999999999999999999999999999964
No 52
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.43 E-value=1e-13 Score=114.23 Aligned_cols=110 Identities=14% Similarity=0.042 Sum_probs=79.5
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccc-cCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCC
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTH-LTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKS 194 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~-~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~ 194 (257)
..|+.+.+.+..|++.+-.++|+||...... ........++..+|+.+..+ .....+||+|.+|..+++++|++|+
T Consensus 94 ~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~s---~~~~~~KP~p~~~~~~~~~~g~~~~ 170 (211)
T TIGR02247 94 KLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFDAVVES---CLEGLRKPDPRIYQLMLERLGVAPE 170 (211)
T ss_pred ccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEEEEe---eecCCCCCCHHHHHHHHHHcCCCHH
Confidence 3578888999999874445778899754321 11111223444455544432 3334589999999999999999999
Q ss_pred cEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhh
Q 025117 195 QICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSM 229 (257)
Q Consensus 195 ~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~ 229 (257)
+|+||||+ ..||.+|+++||++|+|.++....+.
T Consensus 171 ~~l~i~D~-~~di~aA~~aG~~~i~v~~~~~~~~~ 204 (211)
T TIGR02247 171 ECVFLDDL-GSNLKPAAALGITTIKVSDEEQAIHD 204 (211)
T ss_pred HeEEEcCC-HHHHHHHHHcCCEEEEECCHHHHHHH
Confidence 99999999 79999999999999999876544433
No 53
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.41 E-value=2.6e-13 Score=134.94 Aligned_cols=123 Identities=16% Similarity=0.178 Sum_probs=96.5
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCc-hHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCc
Q 025117 117 NYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGG-SMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQ 195 (257)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g-~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~ 195 (257)
.|+.+.+.+..|++.+-.+.|+||.+.... ...+...++. .+|+.+..+. ....+||+|++|..++++++++|++
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~-~~~L~~~gl~~~~Fd~iv~~~---~~~~~KP~Pe~~~~a~~~lgv~p~e 237 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKV-DANLAAAGLPLSMFDAIVSAD---AFENLKPAPDIFLAAAKILGVPTSE 237 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHH-HHHHHHcCCChhHCCEEEECc---ccccCCCCHHHHHHHHHHcCcCccc
Confidence 577889999999874445788999877543 2233455653 4555554433 3345899999999999999999999
Q ss_pred EEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhH
Q 025117 196 ICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDF 249 (257)
Q Consensus 196 ~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el 249 (257)
|+||||+ ..||++|+++||++|+|.+|. ..+++.. ..|+++++++.|+
T Consensus 238 ~v~IgDs-~~Di~AA~~aGm~~I~v~~~~-~~~~L~~----~~a~~vi~~l~el 285 (1057)
T PLN02919 238 CVVIEDA-LAGVQAARAAGMRCIAVTTTL-SEEILKD----AGPSLIRKDIGNI 285 (1057)
T ss_pred EEEEcCC-HHHHHHHHHcCCEEEEECCCC-CHHHHhh----CCCCEEECChHHC
Confidence 9999999 599999999999999999986 4455543 6899999999996
No 54
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.41 E-value=1.7e-13 Score=110.36 Aligned_cols=99 Identities=16% Similarity=0.068 Sum_probs=76.0
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCc
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQ 195 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~ 195 (257)
..++.+.+.++.|++.+-...|+||+... ...+...++..+|+.+..+.. ...+||+|++|..++++++++|++
T Consensus 87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~~~---~~~l~~~~l~~~f~~~~~~~~---~~~~kp~p~~~~~~~~~~~~~~~~ 160 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKNNIKIALASASKNA---PTVLEKLGLIDYFDAIVDPAE---IKKGKPDPEIFLAAAEGLGVSPSE 160 (185)
T ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCccH---HHHHHhcCcHhhCcEEEehhh---cCCCCCChHHHHHHHHHcCCCHHH
Confidence 35678889999998754457788886432 123445566666665544332 334899999999999999999999
Q ss_pred EEEEcCChhhHHHHHHHcCCeEEEEc
Q 025117 196 ICMVGDRLDTDILFGQNGGCKTLLVL 221 (257)
Q Consensus 196 ~~~IGD~~~~Di~~A~~aG~~ti~V~ 221 (257)
|+||||+ ..|+++|+++||++|+|.
T Consensus 161 ~v~vgD~-~~di~aA~~aG~~~i~v~ 185 (185)
T TIGR01990 161 CIGIEDA-QAGIEAIKAAGMFAVGVG 185 (185)
T ss_pred eEEEecC-HHHHHHHHHcCCEEEecC
Confidence 9999999 699999999999999874
No 55
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.40 E-value=2.5e-13 Score=109.04 Aligned_cols=98 Identities=19% Similarity=0.140 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCcE
Q 025117 117 NYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQI 196 (257)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~ 196 (257)
.++.+.+.+..|++.+..++|+||.+... .......|+..+|+.+..+. ....+||+|.+|..++++++++|++|
T Consensus 86 ~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~--~~~~~~~~l~~~f~~i~~~~---~~~~~KP~~~~~~~~~~~~~~~~~~~ 160 (183)
T TIGR01509 86 PLPGVEPLLEALRARGKKLALLTNSPRDH--AVLVQELGLRDLFDVVIFSG---DVGRGKPDPDIYLLALKKLGLKPEEC 160 (183)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEeCCchHH--HHHHHhcCCHHHCCEEEEcC---CCCCCCCCHHHHHHHHHHcCCCcceE
Confidence 46778888888886444578899988744 11212256655555544332 23458999999999999999999999
Q ss_pred EEEcCChhhHHHHHHHcCCeEEEE
Q 025117 197 CMVGDRLDTDILFGQNGGCKTLLV 220 (257)
Q Consensus 197 ~~IGD~~~~Di~~A~~aG~~ti~V 220 (257)
+||||+ ..||.+|+++|+.+|+|
T Consensus 161 ~~vgD~-~~di~aA~~~G~~~i~v 183 (183)
T TIGR01509 161 LFVDDS-PAGIEAAKAAGMHTVLV 183 (183)
T ss_pred EEEcCC-HHHHHHHHHcCCEEEeC
Confidence 999999 58999999999999985
No 56
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.39 E-value=2.5e-13 Score=109.57 Aligned_cols=100 Identities=20% Similarity=0.181 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCc-cccCCCcHHHHHHHHHHhCCCCC
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREP-LVVGKPSTFMMDYLANKFGIQKS 194 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~-~~~gKP~p~~~~~~~~~~~~~~~ 194 (257)
..++.+.+.+..|+ ...+|+||...... ...+...|+..+|+.+..+..... ....||+|++|..+++++|++|+
T Consensus 84 ~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~-~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~ 159 (184)
T TIGR01993 84 KPDPELRNLLLRLP---GRKIIFTNGDRAHA-RRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKALREAGVDPE 159 (184)
T ss_pred CCCHHHHHHHHhCC---CCEEEEeCCCHHHH-HHHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHHHHhCCCcc
Confidence 35677888887775 45788999887543 334455677667776655443321 11259999999999999999999
Q ss_pred cEEEEcCChhhHHHHHHHcCCeEEEE
Q 025117 195 QICMVGDRLDTDILFGQNGGCKTLLV 220 (257)
Q Consensus 195 ~~~~IGD~~~~Di~~A~~aG~~ti~V 220 (257)
+++||||+ .+||++|+++|+++|+|
T Consensus 160 ~~l~vgD~-~~di~aA~~~G~~~i~v 184 (184)
T TIGR01993 160 RAIFFDDS-ARNIAAAKALGMKTVLV 184 (184)
T ss_pred ceEEEeCC-HHHHHHHHHcCCEEeeC
Confidence 99999999 59999999999999986
No 57
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.39 E-value=6.5e-13 Score=110.41 Aligned_cols=130 Identities=16% Similarity=0.127 Sum_probs=97.2
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCcE
Q 025117 117 NYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQI 196 (257)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~ 196 (257)
..+.+.+.+..|+.++-...++||..+.. ....+...|+-.+|+.+.+...... +||+|++|..+.+++|++|++|
T Consensus 87 ~~pGv~~~l~~L~~~~i~~avaS~s~~~~-~~~~L~~~gl~~~f~~~v~~~dv~~---~KP~Pd~yL~Aa~~Lgv~P~~C 162 (221)
T COG0637 87 PIPGVVELLEQLKARGIPLAVASSSPRRA-AERVLARLGLLDYFDVIVTADDVAR---GKPAPDIYLLAAERLGVDPEEC 162 (221)
T ss_pred CCccHHHHHHHHHhcCCcEEEecCChHHH-HHHHHHHccChhhcchhccHHHHhc---CCCCCHHHHHHHHHcCCChHHe
Confidence 45677888889987444466777776533 2234456677778888777665554 7999999999999999999999
Q ss_pred EEEcCChhhHHHHHHHcCCeEEEEccCCCC--hhhhcCCCCCCCCcEEECChhhHHHHHHh
Q 025117 197 CMVGDRLDTDILFGQNGGCKTLLVLSGVTS--LSMLQSPNNSIQPDFYTNKISDFLSLKAA 255 (257)
Q Consensus 197 ~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~--~~~~~~~~~~~~pd~~~~~l~el~~~l~~ 255 (257)
+.|+|+ ...|++|++|||++|.|..+... ..... ....+....++.++...+..
T Consensus 163 vviEDs-~~Gi~Aa~aAGm~vv~v~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~ 218 (221)
T COG0637 163 VVVEDS-PAGIQAAKAAGMRVVGVPAGHDRPHLDPLD----AHGADTVLLDLAELPALLEA 218 (221)
T ss_pred EEEecc-hhHHHHHHHCCCEEEEecCCCCccccchhh----hhhcchhhccHHHHHHHHHh
Confidence 999999 69999999999999999984332 12211 24567778888888766553
No 58
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.38 E-value=1.1e-13 Score=109.68 Aligned_cols=99 Identities=22% Similarity=0.221 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCcE
Q 025117 117 NYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQI 196 (257)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~ 196 (257)
.++.+.+.+..|++.+..++++||.+.... ...+...|+..+|+.+..... ....||+|.+|+.++++++++|++|
T Consensus 78 ~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~-~~~l~~~~~~~~f~~i~~~~~---~~~~Kp~~~~~~~~~~~~~~~p~~~ 153 (176)
T PF13419_consen 78 PYPGVRELLERLKAKGIPLVIVSNGSRERI-ERVLERLGLDDYFDEIISSDD---VGSRKPDPDAYRRALEKLGIPPEEI 153 (176)
T ss_dssp ESTTHHHHHHHHHHTTSEEEEEESSEHHHH-HHHHHHTTHGGGCSEEEEGGG---SSSSTTSHHHHHHHHHHHTSSGGGE
T ss_pred hhhhhhhhhhhcccccceeEEeecCCcccc-cccccccccccccccccccch---hhhhhhHHHHHHHHHHHcCCCcceE
Confidence 456678888889865555778899876432 223445566656665554433 3348999999999999999999999
Q ss_pred EEEcCChhhHHHHHHHcCCeEEEE
Q 025117 197 CMVGDRLDTDILFGQNGGCKTLLV 220 (257)
Q Consensus 197 ~~IGD~~~~Di~~A~~aG~~ti~V 220 (257)
+||||++ .|+++|+++||.+|+|
T Consensus 154 ~~vgD~~-~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 154 LFVGDSP-SDVEAAKEAGIKTIWV 176 (176)
T ss_dssp EEEESSH-HHHHHHHHTTSEEEEE
T ss_pred EEEeCCH-HHHHHHHHcCCeEEeC
Confidence 9999995 9999999999999987
No 59
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.38 E-value=8.1e-12 Score=108.47 Aligned_cols=107 Identities=15% Similarity=0.100 Sum_probs=81.6
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCch-HHHHHHhccCCC----ccccCCCcHHHHHHHHHHhC
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGS-MVGAFVGSTQRE----PLVVGKPSTFMMDYLANKFG 190 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~-~~~~i~~~~~~~----~~~~gKP~p~~~~~~~~~~~ 190 (257)
..++.+.+.++.|++.+..++|+||++.... ...+..++... +|+.+....... ...-+||+|.++..++++++
T Consensus 187 ~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~-~~~l~~l~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~ 265 (300)
T PHA02530 187 KPNPMVVELVKMYKAAGYEIIVVSGRDGVCE-EDTVEWLRQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEKI 265 (300)
T ss_pred CCChhHHHHHHHHHhCCCEEEEEeCCChhhH-HHHHHHHHHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHHHh
Confidence 4578888899999875445788999988653 22344555554 667666554110 11237999999999999998
Q ss_pred C-CCCcEEEEcCChhhHHHHHHHcCCeEEEEccCC
Q 025117 191 I-QKSQICMVGDRLDTDILFGQNGGCKTLLVLSGV 224 (257)
Q Consensus 191 ~-~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~ 224 (257)
. ++++|+||||+ .+|+++|+++|+.+++|.||-
T Consensus 266 ~~~~~~~~~vgD~-~~d~~~a~~~Gi~~i~v~~g~ 299 (300)
T PHA02530 266 APKYDVLLAVDDR-DQVVDMWRRIGLECWQVAPGD 299 (300)
T ss_pred ccCceEEEEEcCc-HHHHHHHHHhCCeEEEecCCC
Confidence 8 67999999999 699999999999999999984
No 60
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.37 E-value=2.6e-13 Score=107.16 Aligned_cols=110 Identities=16% Similarity=0.110 Sum_probs=77.0
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCcccc--------------CCCcccccCchHHHHHHhcc--CCCccccCCCcH
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHL--------------TDAQEWAGGGSMVGAFVGST--QREPLVVGKPST 179 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~--------------~~~~~~~~~g~~~~~i~~~~--~~~~~~~gKP~p 179 (257)
..|+.+.++++.|++.+-.++|+||++..... ...+...|+. |+.+..+. ..+.....||+|
T Consensus 29 ~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~--fd~ii~~~~~~~~~~~~~KP~~ 106 (161)
T TIGR01261 29 RFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII--FDDVLICPHFPDDNCDCRKPKI 106 (161)
T ss_pred eECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc--eeEEEECCCCCCCCCCCCCCCH
Confidence 45678889999998744457899998532110 0001112221 22111110 123445689999
Q ss_pred HHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChh
Q 025117 180 FMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLS 228 (257)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~ 228 (257)
.+|+.++++++++|++++||||+ .+|+.+|+++|+++++|.+|.-...
T Consensus 107 ~~~~~~~~~~~~~~~e~l~IGD~-~~Di~~A~~aGi~~i~~~~~~~~~~ 154 (161)
T TIGR01261 107 KLLEPYLKKNLIDKARSYVIGDR-ETDMQLAENLGIRGIQYDEEELNWD 154 (161)
T ss_pred HHHHHHHHHcCCCHHHeEEEeCC-HHHHHHHHHCCCeEEEEChhhcCHH
Confidence 99999999999999999999999 6999999999999999999876544
No 61
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.35 E-value=5.8e-13 Score=107.63 Aligned_cols=94 Identities=16% Similarity=0.089 Sum_probs=73.6
Q ss_pred HHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCcEEEEcC
Q 025117 122 QYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGD 201 (257)
Q Consensus 122 ~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~~IGD 201 (257)
.+.+..|++ .....|+||+..... ...+...++..+|+.+.++... ..+||+|++|..++++++++|++|+||||
T Consensus 93 ~e~L~~L~~-~~~l~I~T~~~~~~~-~~~l~~~~l~~~fd~i~~~~~~---~~~KP~p~~~~~~~~~~~~~~~~~l~igD 167 (188)
T PRK10725 93 IEVVKAWHG-RRPMAVGTGSESAIA-EALLAHLGLRRYFDAVVAADDV---QHHKPAPDTFLRCAQLMGVQPTQCVVFED 167 (188)
T ss_pred HHHHHHHHh-CCCEEEEcCCchHHH-HHHHHhCCcHhHceEEEehhhc---cCCCCChHHHHHHHHHcCCCHHHeEEEec
Confidence 356666765 356788999876442 2344566777777766554433 34899999999999999999999999999
Q ss_pred ChhhHHHHHHHcCCeEEEEc
Q 025117 202 RLDTDILFGQNGGCKTLLVL 221 (257)
Q Consensus 202 ~~~~Di~~A~~aG~~ti~V~ 221 (257)
+ .+|+++|+++|+++|+|.
T Consensus 168 s-~~di~aA~~aG~~~i~~~ 186 (188)
T PRK10725 168 A-DFGIQAARAAGMDAVDVR 186 (188)
T ss_pred c-HhhHHHHHHCCCEEEeec
Confidence 9 699999999999999985
No 62
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.35 E-value=1.5e-12 Score=107.78 Aligned_cols=103 Identities=11% Similarity=-0.009 Sum_probs=75.0
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccc---cCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCC
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWA---GGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQ 192 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~---~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~ 192 (257)
..|+++.++++.+++.+-.++|+||.+.... ....... ++..+++.+.. .....||+|++|..+++++|++
T Consensus 95 ~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~-~~~~~~~~~~~L~~~f~~~fd-----~~~g~KP~p~~y~~i~~~lgv~ 168 (220)
T TIGR01691 95 HLYPDVPPALEAWLQLGLRLAVYSSGSVPAQ-KLLFGHSDAGNLTPYFSGYFD-----TTVGLKTEAQSYVKIAGQLGSP 168 (220)
T ss_pred CcCcCHHHHHHHHHHCCCEEEEEeCCCHHHH-HHHHhhccccchhhhcceEEE-----eCcccCCCHHHHHHHHHHhCcC
Confidence 4678889999999874445788999876431 1111111 22233332211 1123799999999999999999
Q ss_pred CCcEEEEcCChhhHHHHHHHcCCeEEEEccCCC
Q 025117 193 KSQICMVGDRLDTDILFGQNGGCKTLLVLSGVT 225 (257)
Q Consensus 193 ~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~ 225 (257)
|++|+||||+ ..|+.+|+++||+++++.++..
T Consensus 169 p~e~lfVgDs-~~Di~AA~~AG~~ti~v~r~g~ 200 (220)
T TIGR01691 169 PREILFLSDI-INELDAARKAGLHTGQLVRPGN 200 (220)
T ss_pred hhHEEEEeCC-HHHHHHHHHcCCEEEEEECCCC
Confidence 9999999999 6999999999999999987653
No 63
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.34 E-value=1.3e-12 Score=106.53 Aligned_cols=120 Identities=11% Similarity=0.064 Sum_probs=84.8
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHH-HHHhccCCCccccCCCcHHHHHHHHHHhCCCCC
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVG-AFVGSTQREPLVVGKPSTFMMDYLANKFGIQKS 194 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~-~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~ 194 (257)
..|+.+.+++..|++. +..+++||+..... .......++..++. .+....+.+. .||+|++|..+++++| |+
T Consensus 74 ~~~pG~~e~L~~L~~~-~~~~i~Tn~~~~~~-~~~~~~~~l~~~f~~~f~~i~~~~~---~~~kp~~~~~a~~~~~--~~ 146 (197)
T PHA02597 74 SAYDDALDVINKLKED-YDFVAVTALGDSID-ALLNRQFNLNALFPGAFSEVLMCGH---DESKEKLFIKAKEKYG--DR 146 (197)
T ss_pred cCCCCHHHHHHHHHhc-CCEEEEeCCccchh-HHHHhhCCHHHhCCCcccEEEEecc---CcccHHHHHHHHHHhC--CC
Confidence 3577888899999863 56777788765321 11122334433332 1222222233 5788999999999999 88
Q ss_pred cEEEEcCChhhHHHHHHHc--CCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHHH
Q 025117 195 QICMVGDRLDTDILFGQNG--GCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLS 251 (257)
Q Consensus 195 ~~~~IGD~~~~Di~~A~~a--G~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~~ 251 (257)
+++||||+ .+|+++|+++ ||++|+|.||.. + ....|+|.+.++.|+..
T Consensus 147 ~~v~vgDs-~~di~aA~~a~~Gi~~i~~~~~~~--~------~~~~~~~~~~~~~~~~~ 196 (197)
T PHA02597 147 VVCFVDDL-AHNLDAAHEALSQLPVIHMLRGER--D------HIPKLAHRVKSWNDIEN 196 (197)
T ss_pred cEEEeCCC-HHHHHHHHHHHcCCcEEEecchhh--c------cccchhhhhccHHHHhc
Confidence 99999999 6999999999 999999999953 1 12467899999998863
No 64
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.33 E-value=6.7e-13 Score=106.88 Aligned_cols=98 Identities=11% Similarity=0.065 Sum_probs=74.7
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCc
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQ 195 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~ 195 (257)
..|+.+.+.+..|++.+-...|+||. . . ....+...++..+|+.+.... .....||+|++|..++++++++|++
T Consensus 88 ~~~~g~~~~l~~l~~~g~~i~i~S~~-~-~-~~~~l~~~~l~~~f~~v~~~~---~~~~~kp~~~~~~~~~~~~~~~~~~ 161 (185)
T TIGR02009 88 EVLPGIENFLKRLKKKGIAVGLGSSS-K-N-ADRILAKLGLTDYFDAIVDAD---EVKEGKPHPETFLLAAELLGVSPNE 161 (185)
T ss_pred CCCcCHHHHHHHHHHcCCeEEEEeCc-h-h-HHHHHHHcChHHHCCEeeehh---hCCCCCCChHHHHHHHHHcCCCHHH
Confidence 46778888999998743346788887 2 1 122334556666665554433 3335899999999999999999999
Q ss_pred EEEEcCChhhHHHHHHHcCCeEEEE
Q 025117 196 ICMVGDRLDTDILFGQNGGCKTLLV 220 (257)
Q Consensus 196 ~~~IGD~~~~Di~~A~~aG~~ti~V 220 (257)
++||||+ .+|+++|+++|+++|.|
T Consensus 162 ~v~IgD~-~~di~aA~~~G~~~i~v 185 (185)
T TIGR02009 162 CVVFEDA-LAGVQAARAAGMFAVAV 185 (185)
T ss_pred eEEEeCc-HhhHHHHHHCCCeEeeC
Confidence 9999999 69999999999999875
No 65
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.32 E-value=9.7e-13 Score=100.47 Aligned_cols=99 Identities=21% Similarity=0.179 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccc-------cCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHH
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTH-------LTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANK 188 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~-------~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~ 188 (257)
..|+.+.+++..|++.+-.++|+||...... ....+...++..+ .. ..++ ...||+|++|+.++++
T Consensus 25 ~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~--~~-~~~~----~~~KP~~~~~~~~~~~ 97 (132)
T TIGR01662 25 ILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPID--VL-YACP----HCRKPKPGMFLEALKR 97 (132)
T ss_pred eeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCEE--EE-EECC----CCCCCChHHHHHHHHH
Confidence 4578888999999874445788899873211 0111122222110 11 1111 2479999999999999
Q ss_pred h-CCCCCcEEEEcCChhhHHHHHHHcCCeEEEEc
Q 025117 189 F-GIQKSQICMVGDRLDTDILFGQNGGCKTLLVL 221 (257)
Q Consensus 189 ~-~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~ 221 (257)
+ +++|++++||||+..+|+.+|+++|+++|++.
T Consensus 98 ~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~~ 131 (132)
T TIGR01662 98 FNEIDPEESVYVGDQDLTDLQAAKRAGLAFILVA 131 (132)
T ss_pred cCCCChhheEEEcCCCcccHHHHHHCCCeEEEee
Confidence 9 59999999999943799999999999999986
No 66
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.29 E-value=1.9e-12 Score=103.14 Aligned_cols=109 Identities=11% Similarity=-0.029 Sum_probs=79.2
Q ss_pred CCCHHHHHHHHHHHHcCCCceEEEecC-CCccccCCCcccccCc---------hHHHHHHhccCCCccccCCCcHHHHHH
Q 025117 115 YFNYYKVQYGTLCIRENPGCLFIATNR-DAVTHLTDAQEWAGGG---------SMVGAFVGSTQREPLVVGKPSTFMMDY 184 (257)
Q Consensus 115 ~~~~~~~~~~~~~l~~~~~~~~i~tn~-d~~~~~~~~~~~~~~g---------~~~~~i~~~~~~~~~~~gKP~p~~~~~ 184 (257)
...|+.+.+.+..|++.+-..+|+||+ .... ....+...++. .+|+.+...... ...||.+.+++.
T Consensus 44 ~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~-~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~---~~~kp~~~i~~~ 119 (174)
T TIGR01685 44 VTLIKEVRDVLQTLKDAGTYLATASWNDVPEW-AYEILGTFEITYAGKTVPMHSLFDDRIEIYKP---NKAKQLEMILQK 119 (174)
T ss_pred EEEcccHHHHHHHHHHCCCEEEEEeCCCChHH-HHHHHHhCCcCCCCCcccHHHhceeeeeccCC---chHHHHHHHHHH
Confidence 356889999999998744457899988 3322 11122333333 666665554322 236888888888
Q ss_pred HHHHh--CCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChh
Q 025117 185 LANKF--GIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLS 228 (257)
Q Consensus 185 ~~~~~--~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~ 228 (257)
+.+.+ +++|++|+||||+ ..|+.+|+++|+.++++.+|....+
T Consensus 120 ~~~~~~~gl~p~e~l~VgDs-~~di~aA~~aGi~~i~v~~g~~~~~ 164 (174)
T TIGR01685 120 VNKVDPSVLKPAQILFFDDR-TDNVREVWGYGVTSCYCPSGMDKGT 164 (174)
T ss_pred hhhcccCCCCHHHeEEEcCh-hHhHHHHHHhCCEEEEcCCCccHHH
Confidence 88777 8999999999999 5999999999999999999875443
No 67
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.20 E-value=8.8e-12 Score=99.01 Aligned_cols=98 Identities=21% Similarity=0.226 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCcccc-----------CCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHH
Q 025117 117 NYYKVQYGTLCIRENPGCLFIATNRDAVTHL-----------TDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYL 185 (257)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~-----------~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~ 185 (257)
.|+.+.+++..|++.+-.++|+||+...... ...+...|+. + ..+ ...+....+||+|.+|..+
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~-~-~~i---i~~~~~~~~KP~p~~~~~~ 117 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVP-I-QVL---AATHAGLYRKPMTGMWEYL 117 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCC-E-EEE---EecCCCCCCCCccHHHHHH
Confidence 4688899999998744457899998763210 0011222221 1 111 1112223589999999999
Q ss_pred HHHhC--CCCCcEEEEcCCh-------hhHHHHHHHcCCeEEE
Q 025117 186 ANKFG--IQKSQICMVGDRL-------DTDILFGQNGGCKTLL 219 (257)
Q Consensus 186 ~~~~~--~~~~~~~~IGD~~-------~~Di~~A~~aG~~ti~ 219 (257)
+++++ ++|++++||||+. .+|+++|+++|+++++
T Consensus 118 ~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~~~ 160 (166)
T TIGR01664 118 QSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEFKY 160 (166)
T ss_pred HHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCcCC
Confidence 99999 9999999999994 3699999999999865
No 68
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=99.15 E-value=4.6e-10 Score=88.52 Aligned_cols=113 Identities=25% Similarity=0.289 Sum_probs=78.3
Q ss_pred CCccEEEEeccCCC-------CHHHHHHHHHHHHcCCCc--eEEEecCCCccccCCCcccccCchHHHHHHhccCCCcc-
Q 025117 103 KDVGAVVVGFDRYF-------NYYKVQYGTLCIRENPGC--LFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPL- 172 (257)
Q Consensus 103 ~~~~aVv~~~d~~~-------~~~~~~~~~~~l~~~~~~--~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~- 172 (257)
..+.++++..|..+ -++.+...+..+++..+. ++|+||.-.... . ++ +.-...++...|....
T Consensus 39 ~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~-d-----~~-~~~a~~~~~~lgIpvl~ 111 (168)
T PF09419_consen 39 KGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSD-D-----PD-GERAEALEKALGIPVLR 111 (168)
T ss_pred cCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCccc-C-----cc-HHHHHHHHHhhCCcEEE
Confidence 34556666655543 346677778878764443 788999754221 1 11 2345667777777643
Q ss_pred -ccCCCcHHHHHHHHHHhCC-----CCCcEEEEcCChhhHHHHHHHcCCeEEEEccCC
Q 025117 173 -VVGKPSTFMMDYLANKFGI-----QKSQICMVGDRLDTDILFGQNGGCKTLLVLSGV 224 (257)
Q Consensus 173 -~~gKP~p~~~~~~~~~~~~-----~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~ 224 (257)
...|| ..+..+++.++. .|++++||||++.|||.+|+++|+.+|||..|.
T Consensus 112 h~~kKP--~~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~tilv~~gv 167 (168)
T PF09419_consen 112 HRAKKP--GCFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTILVTDGV 167 (168)
T ss_pred eCCCCC--ccHHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhccCceEEEEecCc
Confidence 34688 555666666643 599999999999999999999999999999986
No 69
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=99.12 E-value=3.2e-10 Score=90.22 Aligned_cols=132 Identities=20% Similarity=0.226 Sum_probs=89.0
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCc-ccc-----------cCchHHHHHHhccCC--CccccCCCcHHH
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQ-EWA-----------GGGSMVGAFVGSTQR--EPLVVGKPSTFM 181 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~-~~~-----------~~g~~~~~i~~~~~~--~~~~~gKP~p~~ 181 (257)
.-.+.+..++..+++..-..+|+||.+..-.-.... ... ..|.-++.+..+-.. +...++||+|.|
T Consensus 31 ~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~id~i~~Cph~p~~~c~cRKP~~gm 110 (181)
T COG0241 31 QFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVKIDGILYCPHHPEDNCDCRKPKPGM 110 (181)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCcccCCChHH
Confidence 334567788888876445578889988743110000 000 011111222222111 125789999999
Q ss_pred HHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHHHHH
Q 025117 182 MDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLK 253 (257)
Q Consensus 182 ~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~~~l 253 (257)
+..+++++++++++.+||||+ .+|+++|.++|++++++.+|......-. ...+++++++.++..++
T Consensus 111 ~~~~~~~~~iD~~~s~~VGD~-~~Dlq~a~n~gi~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 176 (181)
T COG0241 111 LLSALKEYNIDLSRSYVVGDR-LTDLQAAENAGIKGVLVLTGIGVTTDGA-----GRAKWVFDSLAEFANLI 176 (181)
T ss_pred HHHHHHHhCCCccceEEecCc-HHHHHHHHHCCCCceEEEcCcccccccc-----cccccccccHHHHHHHH
Confidence 999999999999999999999 5999999999999999999876543221 25677888888887443
No 70
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.09 E-value=9.9e-10 Score=96.84 Aligned_cols=112 Identities=18% Similarity=0.146 Sum_probs=76.0
Q ss_pred CCCHHHHHHHHHHHHcCCCceEEEecCCCcc---ccCCC-----------cccccCchHHHHHHhcc--CCCccccCCCc
Q 025117 115 YFNYYKVQYGTLCIRENPGCLFIATNRDAVT---HLTDA-----------QEWAGGGSMVGAFVGST--QREPLVVGKPS 178 (257)
Q Consensus 115 ~~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~---~~~~~-----------~~~~~~g~~~~~i~~~~--~~~~~~~gKP~ 178 (257)
...|+.+.+.+..|++.+..++|+||++..- ..... +...++ +++.+..+. +.+....+||+
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl--~fd~i~i~~~~~sd~~~~rKP~ 106 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGI--KFDEVLICPHFPEDNCSCRKPK 106 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCC--ceeeEEEeCCcCcccCCCCCCC
Confidence 4568888999999987444578999974210 00000 011111 111111110 11233468999
Q ss_pred HHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhh
Q 025117 179 TFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSM 229 (257)
Q Consensus 179 p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~ 229 (257)
|.++..++++++++|++++||||+ .+|+++|+++||++|+|.......++
T Consensus 107 p~~l~~a~~~l~v~~~~svmIGDs-~sDi~aAk~aGi~~I~v~~~~~~~~~ 156 (354)
T PRK05446 107 TGLVEEYLAEGAIDLANSYVIGDR-ETDVQLAENMGIKGIRYARETLNWDA 156 (354)
T ss_pred HHHHHHHHHHcCCCcccEEEEcCC-HHHHHHHHHCCCeEEEEECCCCCHHH
Confidence 999999999999999999999999 69999999999999999765544443
No 71
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.08 E-value=3.9e-11 Score=95.84 Aligned_cols=74 Identities=14% Similarity=0.131 Sum_probs=59.3
Q ss_pred eEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHc
Q 025117 135 LFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNG 213 (257)
Q Consensus 135 ~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~a 213 (257)
+.|+||.+.... ...+...++..+|+.+.++... ..+||+|++|..+++++|++|++|+||||+ .+||.+|+++
T Consensus 102 ~~i~Tn~~~~~~-~~~l~~~~l~~~fd~v~~~~~~---~~~KP~p~~f~~~~~~~~~~p~~~l~vgD~-~~Di~~A~~~ 175 (175)
T TIGR01493 102 VAILSNASHWAF-DQFAQQAGLPWYFDRAFSVDTV---RAYKPDPVVYELVFDTVGLPPDRVLMVAAH-QWDLIGARKF 175 (175)
T ss_pred HhhhhCCCHHHH-HHHHHHCCCHHHHhhhccHhhc---CCCCCCHHHHHHHHHHHCCCHHHeEeEecC-hhhHHHHhcC
Confidence 578899887543 2244566788888877654433 348999999999999999999999999999 6999999874
No 72
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.01 E-value=4.2e-10 Score=87.93 Aligned_cols=88 Identities=17% Similarity=0.066 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCcEEE
Q 025117 119 YKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICM 198 (257)
Q Consensus 119 ~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~~ 198 (257)
+.+.+.+..|++.+...+|+||.+..... ..+... +..+|+. ..+.+... +||+|++|..++++++++| +|+|
T Consensus 67 ~g~~e~l~~L~~~g~~~~i~T~~~~~~~~-~~~~~~-l~~~f~~---i~~~~~~~-~Kp~~~~~~~~~~~~~~~~-~~l~ 139 (154)
T TIGR01549 67 RGAADLLKRLKEAGIKLGIISNGSLRAQK-LLLRKH-LGDYFDL---ILGSDEFG-AKPEPEIFLAALESLGLPP-EVLH 139 (154)
T ss_pred cCHHHHHHHHHHCcCeEEEEeCCchHHHH-HHHHHH-HHhcCcE---EEecCCCC-CCcCHHHHHHHHHHcCCCC-CEEE
Confidence 45778888887644457889998875422 121221 3333333 23333344 8999999999999999999 9999
Q ss_pred EcCChhhHHHHHHHcC
Q 025117 199 VGDRLDTDILFGQNGG 214 (257)
Q Consensus 199 IGD~~~~Di~~A~~aG 214 (257)
|||+ ..|+++|+++|
T Consensus 140 iGDs-~~Di~aa~~aG 154 (154)
T TIGR01549 140 VGDN-LNDIEGARNAG 154 (154)
T ss_pred EeCC-HHHHHHHHHcc
Confidence 9999 79999999997
No 73
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.00 E-value=3e-10 Score=92.69 Aligned_cols=86 Identities=17% Similarity=0.156 Sum_probs=64.6
Q ss_pred HHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCcEEEEcC
Q 025117 122 QYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGD 201 (257)
Q Consensus 122 ~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~~IGD 201 (257)
.+.+..|++.+-.+.|+||++.... ...+...|+..+|+.+.+.. .... ||+|++|..++++++++|++|+||||
T Consensus 112 ~~~L~~l~~~g~~~~i~T~~~~~~~-~~~l~~~gl~~~f~~~~~~~---~~~~-KP~p~~~~~~~~~~~~~~~~~i~vGD 186 (197)
T TIGR01548 112 KGLLRELHRAPKGMAVVTGRPRKDA-AKFLTTHGLEILFPVQIWME---DCPP-KPNPEPLILAAKALGVEACHAAMVGD 186 (197)
T ss_pred HHHHHHHHHcCCcEEEECCCCHHHH-HHHHHHcCchhhCCEEEeec---CCCC-CcCHHHHHHHHHHhCcCcccEEEEeC
Confidence 5677778764445788999987543 33445667666666554433 2223 99999999999999999999999999
Q ss_pred ChhhHHHHHHHc
Q 025117 202 RLDTDILFGQNG 213 (257)
Q Consensus 202 ~~~~Di~~A~~a 213 (257)
+ .+||++|+++
T Consensus 187 ~-~~Di~aA~~a 197 (197)
T TIGR01548 187 T-VDDIITGRKA 197 (197)
T ss_pred C-HHHHHHHHhC
Confidence 9 5999999975
No 74
>PLN02954 phosphoserine phosphatase
Probab=98.92 E-value=2e-09 Score=89.40 Aligned_cols=128 Identities=13% Similarity=0.169 Sum_probs=82.2
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCch--HHHH-HHh-----ccCC---CccccCCCcHHHHHHH
Q 025117 117 NYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGS--MVGA-FVG-----STQR---EPLVVGKPSTFMMDYL 185 (257)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~--~~~~-i~~-----~~~~---~~~~~gKP~p~~~~~~ 185 (257)
.|+.+.+.+..+++++-.++|+||+..... ...+...|+.. ++.. +.. ..+. +....++|+|..+..+
T Consensus 85 l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i-~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~~~ 163 (224)
T PLN02954 85 LSPGIPELVKKLRARGTDVYLVSGGFRQMI-APVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQHI 163 (224)
T ss_pred CCccHHHHHHHHHHCCCEEEEECCCcHHHH-HHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHHHH
Confidence 456788888888874334678898876442 22223334321 1110 000 0111 1112367788999999
Q ss_pred HHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHHHHH
Q 025117 186 ANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLK 253 (257)
Q Consensus 186 ~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~~~l 253 (257)
+++++. ++++||||+ .+|+.+|+++|+..+...+|....+... ..|+++++++.+|.+++
T Consensus 164 ~~~~~~--~~~i~iGDs-~~Di~aa~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~el~~~~ 223 (224)
T PLN02954 164 KKKHGY--KTMVMIGDG-ATDLEARKPGGADLFIGYGGVQVREAVA-----AKADWFVTDFQDLIEVL 223 (224)
T ss_pred HHHcCC--CceEEEeCC-HHHHHhhhcCCCCEEEecCCCccCHHHH-----hcCCEEECCHHHHHHhh
Confidence 988875 689999999 6999999999988765544333323222 46899999999998765
No 75
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=98.92 E-value=6.5e-10 Score=92.04 Aligned_cols=125 Identities=17% Similarity=0.116 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhc-----cC--CCccccCCCcHHHHHHHHHHh
Q 025117 117 NYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGS-----TQ--REPLVVGKPSTFMMDYLANKF 189 (257)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~-----~~--~~~~~~gKP~p~~~~~~~~~~ 189 (257)
.++.+.+.+..+++.+...+|+||...... ...+...++..++...... ++ ......++|+|.+|+.+++++
T Consensus 86 ~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~-~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 164 (219)
T TIGR00338 86 LTEGAEELVKTLKEKGYKVAVISGGFDLFA-EHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILLRKE 164 (219)
T ss_pred cCCCHHHHHHHHHHCCCEEEEECCCcHHHH-HHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCcccHHHHHHHHHHc
Confidence 466777888888874445788898765332 1122233433332111000 00 111233678999999999999
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEEC--ChhhHHHHH
Q 025117 190 GIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTN--KISDFLSLK 253 (257)
Q Consensus 190 ~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~--~l~el~~~l 253 (257)
+++|++|+||||+ .+|+.+|+++|+..+ +. | .+.+. ..+++++. ++.+++.+|
T Consensus 165 ~~~~~~~i~iGDs-~~Di~aa~~ag~~i~-~~-~---~~~~~-----~~a~~~i~~~~~~~~~~~~ 219 (219)
T TIGR00338 165 GISPENTVAVGDG-ANDLSMIKAAGLGIA-FN-A---KPKLQ-----QKADICINKKDLTDILPLL 219 (219)
T ss_pred CCCHHHEEEEECC-HHHHHHHHhCCCeEE-eC-C---CHHHH-----HhchhccCCCCHHHHHhhC
Confidence 9999999999999 699999999999753 22 2 22333 36788866 778887653
No 76
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=98.89 E-value=2.2e-09 Score=86.55 Aligned_cols=101 Identities=20% Similarity=0.147 Sum_probs=80.1
Q ss_pred HHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCC---ccccCCCcHHHHHHHHHHhCCC-CCc
Q 025117 120 KVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQRE---PLVVGKPSTFMMDYLANKFGIQ-KSQ 195 (257)
Q Consensus 120 ~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~---~~~~gKP~p~~~~~~~~~~~~~-~~~ 195 (257)
.++..+.-|+. ....+.||.++... ...+..+|+...|+.+....... ..++-||++.+|+.+++..|+. |.+
T Consensus 104 ~LRnlLL~l~~--r~k~~FTNa~k~HA-~r~Lk~LGieDcFegii~~e~~np~~~~~vcKP~~~afE~a~k~agi~~p~~ 180 (244)
T KOG3109|consen 104 VLRNLLLSLKK--RRKWIFTNAYKVHA-IRILKKLGIEDCFEGIICFETLNPIEKTVVCKPSEEAFEKAMKVAGIDSPRN 180 (244)
T ss_pred HHHHHHHhCcc--ccEEEecCCcHHHH-HHHHHHhChHHhccceeEeeccCCCCCceeecCCHHHHHHHHHHhCCCCcCc
Confidence 45555555543 22788899999654 44667788877777776554333 4677899999999999999998 999
Q ss_pred EEEEcCChhhHHHHHHHcCCeEEEEccCC
Q 025117 196 ICMVGDRLDTDILFGQNGGCKTLLVLSGV 224 (257)
Q Consensus 196 ~~~IGD~~~~Di~~A~~aG~~ti~V~~G~ 224 (257)
++++.|| ...|++|++.|+++++|....
T Consensus 181 t~FfDDS-~~NI~~ak~vGl~tvlv~~~~ 208 (244)
T KOG3109|consen 181 TYFFDDS-ERNIQTAKEVGLKTVLVGREH 208 (244)
T ss_pred eEEEcCc-hhhHHHHHhccceeEEEEeee
Confidence 9999999 799999999999999998654
No 77
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=98.89 E-value=4.4e-09 Score=87.98 Aligned_cols=103 Identities=14% Similarity=0.018 Sum_probs=70.0
Q ss_pred CCCHHHHHHHHHHHHcCCCceEEEecCCCc---cccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCC
Q 025117 115 YFNYYKVQYGTLCIRENPGCLFIATNRDAV---THLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGI 191 (257)
Q Consensus 115 ~~~~~~~~~~~~~l~~~~~~~~i~tn~d~~---~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~ 191 (257)
...++...+.++.+++++..++|+||+... ......+..+|+..+++.+. +.+.....||+|. .+++++++
T Consensus 113 s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~i~---~~d~~~~~Kp~~~---~~l~~~~i 186 (237)
T TIGR01672 113 SIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPVIF---AGDKPGQYQYTKT---QWIQDKNI 186 (237)
T ss_pred CcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchheeEEE---CCCCCCCCCCCHH---HHHHhCCC
Confidence 356666888888888755568899998431 11122233456655554433 3333233788875 35566665
Q ss_pred CCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChh
Q 025117 192 QKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLS 228 (257)
Q Consensus 192 ~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~ 228 (257)
++||||+ ..||.+|+++|+++|.|.||.++..
T Consensus 187 ----~i~vGDs-~~DI~aAk~AGi~~I~V~~g~~s~~ 218 (237)
T TIGR01672 187 ----RIHYGDS-DNDITAAKEAGARGIRILRASNSTY 218 (237)
T ss_pred ----eEEEeCC-HHHHHHHHHCCCCEEEEEecCCCCC
Confidence 7999999 6999999999999999999987654
No 78
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=98.87 E-value=2.2e-09 Score=84.21 Aligned_cols=101 Identities=17% Similarity=0.157 Sum_probs=72.9
Q ss_pred HHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCcEEEEcCCh
Q 025117 124 GTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRL 203 (257)
Q Consensus 124 ~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~~IGD~~ 203 (257)
+++.|++++-.++|+||+..... ...+...|+..++. ..||+|.++..+++++++++++|+||||+
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~-~~~l~~~gi~~~~~------------~~~~k~~~~~~~~~~~~~~~~~~~~vGDs- 101 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLV-EDRCKTLGITHLYQ------------GQSNKLIAFSDILEKLALAPENVAYIGDD- 101 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHH-HHHHHHcCCCEEEe------------cccchHHHHHHHHHHcCCCHHHEEEECCC-
Confidence 77888874445788999876432 22223333332221 14899999999999999999999999999
Q ss_pred hhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChh
Q 025117 204 DTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKIS 247 (257)
Q Consensus 204 ~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~ 247 (257)
.+|+.+++++|+. +.|.++.. .+. ..|++++++..
T Consensus 102 ~~D~~~~~~ag~~-~~v~~~~~---~~~-----~~a~~i~~~~~ 136 (154)
T TIGR01670 102 LIDWPVMEKVGLS-VAVADAHP---LLI-----PRADYVTRIAG 136 (154)
T ss_pred HHHHHHHHHCCCe-EecCCcCH---HHH-----HhCCEEecCCC
Confidence 5999999999996 77776642 232 35888887664
No 79
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.84 E-value=5.3e-09 Score=78.88 Aligned_cols=103 Identities=22% Similarity=0.228 Sum_probs=74.1
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCC-------------ccccCCCcHHHH
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQRE-------------PLVVGKPSTFMM 182 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~-------------~~~~gKP~p~~~ 182 (257)
..++.+.+.+..+++++...+|+||...... .......++..+++.+....+.. ....+||++..+
T Consensus 24 ~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (139)
T cd01427 24 ELYPGVKEALKELKEKGIKLALATNKSRREV-LELLEELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKL 102 (139)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCchHHHH-HHHHHHcCCchhhhheeccchhhhhcccccccccccccccCCCCHHHH
Confidence 4567788888888875445788898875442 22223344444455444332221 233459999999
Q ss_pred HHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEE
Q 025117 183 DYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLV 220 (257)
Q Consensus 183 ~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V 220 (257)
..+++.++.+++++++|||+ .+|+.+|+++|+.+++|
T Consensus 103 ~~~~~~~~~~~~~~~~igD~-~~d~~~~~~~g~~~i~v 139 (139)
T cd01427 103 LAALKLLGVDPEEVLMVGDS-LNDIEMAKAAGGLGVAV 139 (139)
T ss_pred HHHHHHcCCChhhEEEeCCC-HHHHHHHHHcCCceeeC
Confidence 99999999999999999999 59999999999999875
No 80
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=98.80 E-value=9.6e-09 Score=84.71 Aligned_cols=121 Identities=14% Similarity=0.109 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhc--cCCCccccCCCcHHHHHHHHHHhCCCC-Cc
Q 025117 119 YKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGS--TQREPLVVGKPSTFMMDYLANKFGIQK-SQ 195 (257)
Q Consensus 119 ~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~--~~~~~~~~gKP~p~~~~~~~~~~~~~~-~~ 195 (257)
+..+..+..|..++-.+.++||.++..... ..-..+.++..+... .+...+..|||+|++|..++++++.+| +.
T Consensus 95 PGa~kLv~~L~~~gip~alat~s~~~~~~~---k~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~~~~~~k 171 (222)
T KOG2914|consen 95 PGAEKLVNHLKNNGIPVALATSSTSASFEL---KISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAKRLGVPPPSK 171 (222)
T ss_pred CcHHHHHHHHHhCCCCeeEEecCCcccHHH---HHHHhhHHHHhcCCCeecCCccccCCCCCchHHHHHHHhcCCCCccc
Confidence 367788888876433477889987644211 222223344444321 122345668999999999999999988 99
Q ss_pred EEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhH
Q 025117 196 ICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDF 249 (257)
Q Consensus 196 ~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el 249 (257)
|++++|+ ...+++|++|||..|+|.+..-... ....++.+++++.+.
T Consensus 172 ~lVfeds-~~Gv~aa~aagm~vi~v~~~~~~~~------~~~~~~~~~~~~~~~ 218 (222)
T KOG2914|consen 172 CLVFEDS-PVGVQAAKAAGMQVVGVATPDLSNL------FSAGATLILESLEDF 218 (222)
T ss_pred eEEECCC-HHHHHHHHhcCCeEEEecCCCcchh------hhhccceeccccccc
Confidence 9999999 5999999999999999998221111 124567777766553
No 81
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=98.70 E-value=2.7e-08 Score=80.33 Aligned_cols=108 Identities=20% Similarity=0.234 Sum_probs=73.4
Q ss_pred HHHHHHHcCCCc-eEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCcEEEEcC
Q 025117 123 YGTLCIRENPGC-LFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGD 201 (257)
Q Consensus 123 ~~~~~l~~~~~~-~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~~IGD 201 (257)
.++..+++ .|+ ..|+||+..... ...+...++..++. + .+|.+..+..+++++|+++++++||||
T Consensus 55 ~~i~~L~~-~Gi~v~I~T~~~~~~v-~~~l~~lgl~~~f~------g------~~~k~~~l~~~~~~~gl~~~ev~~VGD 120 (183)
T PRK09484 55 YGIRCLLT-SGIEVAIITGRKSKLV-EDRMTTLGITHLYQ------G------QSNKLIAFSDLLEKLAIAPEQVAYIGD 120 (183)
T ss_pred HHHHHHHH-CCCEEEEEeCCCcHHH-HHHHHHcCCceeec------C------CCcHHHHHHHHHHHhCCCHHHEEEECC
Confidence 45666665 455 668899866432 21222333322221 1 466789999999999999999999999
Q ss_pred ChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEEC------ChhhHHHHHH
Q 025117 202 RLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTN------KISDFLSLKA 254 (257)
Q Consensus 202 ~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~------~l~el~~~l~ 254 (257)
+ ..|+.+|+++|+.. .|.+ ..+... ..|+|+++ .+.|+.+++.
T Consensus 121 s-~~D~~~a~~aG~~~-~v~~----~~~~~~----~~a~~v~~~~~g~g~~~el~~~i~ 169 (183)
T PRK09484 121 D-LIDWPVMEKVGLSV-AVAD----AHPLLL----PRADYVTRIAGGRGAVREVCDLLL 169 (183)
T ss_pred C-HHHHHHHHHCCCeE-ecCC----hhHHHH----HhCCEEecCCCCCCHHHHHHHHHH
Confidence 9 69999999999984 4532 222221 46899996 6788877653
No 82
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=98.67 E-value=5.6e-08 Score=81.30 Aligned_cols=101 Identities=15% Similarity=0.094 Sum_probs=67.4
Q ss_pred CCCHHHHHHHHHHHHcCCCceEEEecCCCccc---cCCCcccccC--chHHHHHHhccCCCccccCCCcHHHHHHHHHHh
Q 025117 115 YFNYYKVQYGTLCIRENPGCLFIATNRDAVTH---LTDAQEWAGG--GSMVGAFVGSTQREPLVVGKPSTFMMDYLANKF 189 (257)
Q Consensus 115 ~~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~---~~~~~~~~~~--g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~ 189 (257)
...|+.+.+.++.+++++..++++||++.... ....+...|+ ..++..+. +.+. ..||++.. .++++
T Consensus 113 a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil---~gd~--~~K~~K~~---~l~~~ 184 (237)
T PRK11009 113 SIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIF---AGDK--PGQYTKTQ---WLKKK 184 (237)
T ss_pred CcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEE---cCCC--CCCCCHHH---HHHhc
Confidence 45778888999999775555888999753211 1111122444 33333222 2221 26888863 45566
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChh
Q 025117 190 GIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLS 228 (257)
Q Consensus 190 ~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~ 228 (257)
++ ++||||+ ..|+.+|++||+++|.|.||..+..
T Consensus 185 ~i----~I~IGDs-~~Di~aA~~AGi~~I~v~~G~~~~~ 218 (237)
T PRK11009 185 NI----RIFYGDS-DNDITAAREAGARGIRILRAANSTY 218 (237)
T ss_pred CC----eEEEcCC-HHHHHHHHHcCCcEEEEecCCCCCC
Confidence 65 8999999 6999999999999999999987543
No 83
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=98.66 E-value=1.5e-08 Score=80.50 Aligned_cols=83 Identities=16% Similarity=0.118 Sum_probs=61.6
Q ss_pred HHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCcEEEEcCC
Q 025117 123 YGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDR 202 (257)
Q Consensus 123 ~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~~IGD~ 202 (257)
.++..|++.+-.+.|+||+..... ...+...++..+|+ ..||+|..+..+++++++++++++||||+
T Consensus 41 ~~~~~L~~~Gi~laIiT~k~~~~~-~~~l~~lgi~~~f~------------~~kpkp~~~~~~~~~l~~~~~ev~~iGD~ 107 (169)
T TIGR02726 41 MGVIVLQLCGIDVAIITSKKSGAV-RHRAEELKIKRFHE------------GIKKKTEPYAQMLEEMNISDAEVCYVGDD 107 (169)
T ss_pred HHHHHHHHCCCEEEEEECCCcHHH-HHHHHHCCCcEEEe------------cCCCCHHHHHHHHHHcCcCHHHEEEECCC
Confidence 466777763334678999877542 22334445443332 13899999999999999999999999999
Q ss_pred hhhHHHHHHHcCCeEEE
Q 025117 203 LDTDILFGQNGGCKTLL 219 (257)
Q Consensus 203 ~~~Di~~A~~aG~~ti~ 219 (257)
..|+.+++.+|+..+.
T Consensus 108 -~nDi~~~~~ag~~~am 123 (169)
T TIGR02726 108 -LVDLSMMKRVGLAVAV 123 (169)
T ss_pred -HHHHHHHHHCCCeEEC
Confidence 5999999999977553
No 84
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=98.65 E-value=6.8e-08 Score=73.36 Aligned_cols=88 Identities=13% Similarity=0.020 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecC-CCccccCCCccccc-------CchHHHHHHhccCCCccccCCCcHHHHHHHHH
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNR-DAVTHLTDAQEWAG-------GGSMVGAFVGSTQREPLVVGKPSTFMMDYLAN 187 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~-d~~~~~~~~~~~~~-------~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~ 187 (257)
..|+.+.+.++.|++++-.++|+||+ ..... ...+...+ +..+|+.+.. .+ .||+|.+|..+++
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~-~~~l~~~~~~~~i~~l~~~f~~~~~---~~----~~pkp~~~~~a~~ 100 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVA-YELLKIFEDFGIIFPLAEYFDPLTI---GY----WLPKSPRLVEIAL 100 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHH-HHHHHhccccccchhhHhhhhhhhh---cC----CCcHHHHHHHHHH
Confidence 46899999999998744447889998 44332 11222233 3344444432 22 4799999999999
Q ss_pred HhC--CCCCcEEEEcCChhhHHHHHHH
Q 025117 188 KFG--IQKSQICMVGDRLDTDILFGQN 212 (257)
Q Consensus 188 ~~~--~~~~~~~~IGD~~~~Di~~A~~ 212 (257)
++| ++|++|+||||+ ..|+...++
T Consensus 101 ~lg~~~~p~~~l~igDs-~~n~~~~~~ 126 (128)
T TIGR01681 101 KLNGVLKPKSILFVDDR-PDNNEEVDY 126 (128)
T ss_pred HhcCCCCcceEEEECCC-HhHHHHHHh
Confidence 999 999999999999 588876553
No 85
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=98.60 E-value=2.9e-08 Score=82.31 Aligned_cols=128 Identities=9% Similarity=-0.065 Sum_probs=81.9
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHH---hccCCCccccCCCcHHH----------H
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFV---GSTQREPLVVGKPSTFM----------M 182 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~---~~~~~~~~~~gKP~p~~----------~ 182 (257)
..++.+.+.++.+++++-..+|+||+...+. ...+... +.. ..+. .....+.....||+|.. .
T Consensus 74 ~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i-~~il~~~-~~~--~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K 149 (219)
T PRK09552 74 EIREGFHEFVQFVKENNIPFYVVSGGMDFFV-YPLLQGL-IPK--EQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCK 149 (219)
T ss_pred CcCcCHHHHHHHHHHcCCeEEEECCCcHHHH-HHHHHHh-CCc--CcEEEeEEEecCCeeEEeccCCccccccccCCCch
Confidence 3567788888888874445778899876442 2122211 111 1111 01122334567898865 3
Q ss_pred HHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHHHHHHh
Q 025117 183 DYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKAA 255 (257)
Q Consensus 183 ~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~~~l~~ 255 (257)
..++++++..+++|+||||+ .+|+.+|++||+.. +. +.- .+...+ ...|.+.++++.|+.+.+..
T Consensus 150 ~~~l~~~~~~~~~~i~iGDs-~~Di~aa~~Ag~~~--a~-~~l-~~~~~~---~~~~~~~~~~f~ei~~~l~~ 214 (219)
T PRK09552 150 PSLIRKLSDTNDFHIVIGDS-ITDLEAAKQADKVF--AR-DFL-ITKCEE---LGIPYTPFETFHDVQTELKH 214 (219)
T ss_pred HHHHHHhccCCCCEEEEeCC-HHHHHHHHHCCcce--eH-HHH-HHHHHH---cCCCccccCCHHHHHHHHHH
Confidence 47888899999999999999 69999999999933 33 211 111111 13588889999999888764
No 86
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=98.58 E-value=7.3e-08 Score=78.83 Aligned_cols=127 Identities=9% Similarity=-0.052 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCC-ccccCCCcHHHHHHHHHHhCCCCCc
Q 025117 117 NYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQRE-PLVVGKPSTFMMDYLANKFGIQKSQ 195 (257)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~-~~~~gKP~p~~~~~~~~~~~~~~~~ 195 (257)
.|+.+.+.+..+++. ....|+||+...+. ...+...++..++.......+.. .....+|.|.....++++++..+++
T Consensus 69 ~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~-~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~~~~ 146 (205)
T PRK13582 69 PLPGAVEFLDWLRER-FQVVILSDTFYEFA-GPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSLGYR 146 (205)
T ss_pred CCCCHHHHHHHHHhc-CCEEEEeCCcHHHH-HHHHHHcCCchhhcceEEECCCCeEECccccccchHHHHHHHHHHhCCe
Confidence 466778888888875 56778899877543 22334455554443221111111 0111123333445666677777899
Q ss_pred EEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcE-EECChhhHHHHHHh
Q 025117 196 ICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDF-YTNKISDFLSLKAA 255 (257)
Q Consensus 196 ~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~-~~~~l~el~~~l~~ 255 (257)
|+||||+ .+|+.+|+++|+. +++ +. +..... ..|++ +++++.||.+++..
T Consensus 147 ~v~iGDs-~~D~~~~~aa~~~-v~~--~~-~~~~~~-----~~~~~~~~~~~~el~~~l~~ 197 (205)
T PRK13582 147 VIAAGDS-YNDTTMLGEADAG-ILF--RP-PANVIA-----EFPQFPAVHTYDELLAAIDK 197 (205)
T ss_pred EEEEeCC-HHHHHHHHhCCCC-EEE--CC-CHHHHH-----hCCcccccCCHHHHHHHHHH
Confidence 9999999 6999999999973 333 22 222221 24665 89999999987754
No 87
>PTZ00445 p36-lilke protein; Provisional
Probab=98.51 E-value=9.3e-07 Score=71.68 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=47.3
Q ss_pred cccCCCcHHH--H--HHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccC
Q 025117 172 LVVGKPSTFM--M--DYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSG 223 (257)
Q Consensus 172 ~~~gKP~p~~--~--~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G 223 (257)
..+.||+|.+ | +.+++++|++|++|++|.|+ ...+++|++.|+.++.+..+
T Consensus 153 ~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~-~~NVeaA~~lGi~ai~f~~~ 207 (219)
T PTZ00445 153 LGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDD-MNNCKNALKEGYIALHVTGN 207 (219)
T ss_pred hcccCCCccchHHHHHHHHHHcCCCHHHeEeecCC-HHHHHHHHHCCCEEEEcCCh
Confidence 4668999999 9 99999999999999999999 69999999999999999854
No 88
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=98.49 E-value=1.3e-08 Score=79.22 Aligned_cols=91 Identities=12% Similarity=-0.116 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCc-hHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCc
Q 025117 117 NYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGG-SMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQ 195 (257)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g-~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~ 195 (257)
.++.+.+.+..|++ .-.+.|+||+...+.. ..+...+.. .|++.+.+ .+....+||+ |..++++++.+|++
T Consensus 46 l~pG~~e~L~~L~~-~~~l~I~Ts~~~~~~~-~il~~l~~~~~~f~~i~~---~~d~~~~KP~---~~k~l~~l~~~p~~ 117 (148)
T smart00577 46 KRPGVDEFLKRASE-LFELVVFTAGLRMYAD-PVLDLLDPKKYFGYRRLF---RDECVFVKGK---YVKDLSLLGRDLSN 117 (148)
T ss_pred ECCCHHHHHHHHHh-ccEEEEEeCCcHHHHH-HHHHHhCcCCCEeeeEEE---CccccccCCe---EeecHHHcCCChhc
Confidence 46778888988874 3457889999886532 233444442 24454443 3344458997 88999999999999
Q ss_pred EEEEcCChhhHHHHHHHcCCe
Q 025117 196 ICMVGDRLDTDILFGQNGGCK 216 (257)
Q Consensus 196 ~~~IGD~~~~Di~~A~~aG~~ 216 (257)
|+||||+ ..|+++|+++|+.
T Consensus 118 ~i~i~Ds-~~~~~aa~~ngI~ 137 (148)
T smart00577 118 VIIIDDS-PDSWPFHPENLIP 137 (148)
T ss_pred EEEEECC-HHHhhcCccCEEE
Confidence 9999999 5999999999875
No 89
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=98.48 E-value=2.7e-07 Score=81.02 Aligned_cols=90 Identities=11% Similarity=-0.044 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCccccCCCccc----ccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCC
Q 025117 117 NYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEW----AGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQ 192 (257)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~----~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~ 192 (257)
.|+.+++.+..|++.+-.+.||||++..... ..+.. .+...+|+.+. . ..||+|..+..+++++++.
T Consensus 32 ~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~-~~l~~~~~~~~~~~~f~~~~---~-----~~~pk~~~i~~~~~~l~i~ 102 (320)
T TIGR01686 32 LHKTLQEKIKTLKKQGFLLALASKNDEDDAK-KVFERRKDFILQAEDFDARS---I-----NWGPKSESLRKIAKKLNLG 102 (320)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEcCCCHHHHH-HHHHhCccccCcHHHeeEEE---E-----ecCchHHHHHHHHHHhCCC
Confidence 4889999999998743346789999875422 12222 34433443321 1 1699999999999999999
Q ss_pred CCcEEEEcCChhhHHHHHHHcCCe
Q 025117 193 KSQICMVGDRLDTDILFGQNGGCK 216 (257)
Q Consensus 193 ~~~~~~IGD~~~~Di~~A~~aG~~ 216 (257)
+++++||||+ ..|+.++++++-.
T Consensus 103 ~~~~vfidD~-~~d~~~~~~~lp~ 125 (320)
T TIGR01686 103 TDSFLFIDDN-PAERANVKITLPV 125 (320)
T ss_pred cCcEEEECCC-HHHHHHHHHHCCC
Confidence 9999999999 5999999997754
No 90
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=98.44 E-value=2e-06 Score=65.61 Aligned_cols=119 Identities=22% Similarity=0.212 Sum_probs=77.6
Q ss_pred CccEEEEeccCCCCH-------HHHHHHHHHHHc-CC-CceEEEecCCCccccCCCcccccCchHHHHHHhccCCCc--c
Q 025117 104 DVGAVVVGFDRYFNY-------YKVQYGTLCIRE-NP-GCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREP--L 172 (257)
Q Consensus 104 ~~~aVv~~~d~~~~~-------~~~~~~~~~l~~-~~-~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~--~ 172 (257)
.+.|||+..|..+++ +....-.+.++. ++ .-++++||.-... ..-.-++....++...|..+ .
T Consensus 42 ~ikavVlDKDNcit~P~~~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~------~~D~d~s~Ak~le~k~gIpVlRH 115 (190)
T KOG2961|consen 42 GIKAVVLDKDNCITAPYSLAIWPPLLPSIERCKAVYGEKDIAVFSNSAGLT------EYDHDDSKAKALEAKIGIPVLRH 115 (190)
T ss_pred CceEEEEcCCCeeeCCcccccCchhHHHHHHHHHHhCcccEEEEecCcCcc------ccCCchHHHHHHHHhhCCceEee
Confidence 678888888766433 222223333332 22 3467778864421 22334667788888777765 3
Q ss_pred ccCCCc--HHHHHHHHHHhC-CCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChh
Q 025117 173 VVGKPS--TFMMDYLANKFG-IQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLS 228 (257)
Q Consensus 173 ~~gKP~--p~~~~~~~~~~~-~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~ 228 (257)
...||- .+.+++....-. ..+++++||||++.|||..|+.+|.-++|...|....+
T Consensus 116 s~kKP~ct~E~~~y~~~Nshv~~~se~~~vGDRlfTDI~~aN~mGs~gVw~~~gv~~~~ 174 (190)
T KOG2961|consen 116 SVKKPACTAEEVEYHFGNSHVCTSSELIMVGDRLFTDIVYANRMGSLGVWTEPGVRAEE 174 (190)
T ss_pred cccCCCccHHHHHHHhCCcccCChhHeEEEccchhhhHhhhhhccceeEEecccccccc
Confidence 445663 445555432111 57899999999999999999999999999999987544
No 91
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=98.40 E-value=4.4e-06 Score=73.23 Aligned_cols=128 Identities=13% Similarity=0.025 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHH-HHHhc----cCC--CccccCCCcHHHHHHHHHH
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVG-AFVGS----TQR--EPLVVGKPSTFMMDYLANK 188 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~-~i~~~----~~~--~~~~~gKP~p~~~~~~~~~ 188 (257)
..++.+.+.++.+++.+-...|+|+....+. .......++...+. .++.. ++. .....+||+++.++.++++
T Consensus 181 ~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~-~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~~ 259 (322)
T PRK11133 181 PLMPGLTELVLKLQALGWKVAIASGGFTYFA-DYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQE 259 (322)
T ss_pred CCChhHHHHHHHHHHcCCEEEEEECCcchhH-HHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHHH
Confidence 3567778888888874444778888765332 11112222211100 00000 010 1233479999999999999
Q ss_pred hCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEEC--ChhhHHHHHHh
Q 025117 189 FGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTN--KISDFLSLKAA 255 (257)
Q Consensus 189 ~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~--~l~el~~~l~~ 255 (257)
+|+++++|++|||+ .+|+.+++.||+..++ +..+.+. ..++++++ +|..++-++.+
T Consensus 260 lgi~~~qtIaVGDg-~NDl~m~~~AGlgiA~-----nAkp~Vk-----~~Ad~~i~~~~l~~~l~~~~~ 317 (322)
T PRK11133 260 YEIPLAQTVAIGDG-ANDLPMIKAAGLGIAY-----HAKPKVN-----EQAQVTIRHADLMGVLCILSG 317 (322)
T ss_pred cCCChhhEEEEECC-HHHHHHHHHCCCeEEe-----CCCHHHH-----hhCCEEecCcCHHHHHHHhcc
Confidence 99999999999999 5999999999987664 2233443 36788876 67777766654
No 92
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=98.39 E-value=1.2e-07 Score=77.06 Aligned_cols=107 Identities=10% Similarity=-0.050 Sum_probs=66.7
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCC-----cc--ccCCCcHHHHHHHHHH
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQRE-----PL--VVGKPSTFMMDYLANK 188 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~-----~~--~~gKP~p~~~~~~~~~ 188 (257)
..|+.+.+.+..+++.+..++|+||...... ...+...|+..++.......... .. .-.+|++..+..++++
T Consensus 80 ~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~-~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~~ 158 (201)
T TIGR01491 80 SLRDYAEELVRWLKEKGLKTAIVSGGIMCLA-KKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKRE 158 (201)
T ss_pred CCCccHHHHHHHHHHCCCEEEEEeCCcHHHH-HHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHHH
Confidence 3567788889999874445788898866432 21222333322221111110000 00 0013334688888999
Q ss_pred hCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCC
Q 025117 189 FGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGV 224 (257)
Q Consensus 189 ~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~ 224 (257)
+++++++++||||+ .+|+.+|+++|+..+....+.
T Consensus 159 ~~~~~~~~i~iGDs-~~D~~~a~~ag~~~a~~~~~~ 193 (201)
T TIGR01491 159 LNPSLTETVAVGDS-KNDLPMFEVADISISLGDEGH 193 (201)
T ss_pred hCCCHHHEEEEcCC-HhHHHHHHhcCCeEEECCCcc
Confidence 99999999999999 699999999999766555443
No 93
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=98.37 E-value=2.1e-07 Score=76.93 Aligned_cols=128 Identities=10% Similarity=-0.082 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHh---ccCCCccccCCCcHHHH----------
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVG---STQREPLVVGKPSTFMM---------- 182 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~---~~~~~~~~~gKP~p~~~---------- 182 (257)
..++.+.+.+..+++++..+.|+|++...+. ...+...+. ...+.. ..+.+.....||+|..+
T Consensus 70 ~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i-~~il~~~~~---~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K 145 (214)
T TIGR03333 70 EIREGFREFVAFINEHGIPFYVISGGMDFFV-YPLLEGIVE---KDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCK 145 (214)
T ss_pred cccccHHHHHHHHHHCCCeEEEECCCcHHHH-HHHHHhhCC---cccEEeceeEeeCCeeEEeCCCCCccccccCCCCCH
Confidence 4556778888888875445778888866432 111111111 112211 11223345678988776
Q ss_pred HHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHHHHHHh
Q 025117 183 DYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKAA 255 (257)
Q Consensus 183 ~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~~~l~~ 255 (257)
..++++++..+++++||||+ .+|+.+|+.||+ +++.. . -.....+ ...|...++++.|+.++|+.
T Consensus 146 ~~~l~~~~~~~~~~i~iGDg-~~D~~~a~~Ad~--~~ar~-~-l~~~~~~---~~~~~~~~~~f~di~~~l~~ 210 (214)
T TIGR03333 146 PSLIRKLSEPNDYHIVIGDS-VTDVEAAKQSDL--CFARD-Y-LLNECEE---LGLNHAPFQDFYDVRKELEN 210 (214)
T ss_pred HHHHHHHhhcCCcEEEEeCC-HHHHHHHHhCCe--eEehH-H-HHHHHHH---cCCCccCcCCHHHHHHHHHH
Confidence 36777777788999999999 799999999998 55543 1 1111111 13467778999999888764
No 94
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=98.35 E-value=2.5e-07 Score=81.23 Aligned_cols=105 Identities=15% Similarity=0.159 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccc-c-------CchHHHHHHhccCCCcccc--------------
Q 025117 117 NYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWA-G-------GGSMVGAFVGSTQREPLVV-------------- 174 (257)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~-~-------~g~~~~~i~~~~~~~~~~~-------------- 174 (257)
.++.+.+.+..|++.+..++|+||++..+.. ..+... | +..+|+.+.+... +|.++
T Consensus 185 ~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~-~im~~l~g~~~~~~~w~~yFD~IIt~a~-KP~FF~~~~pf~~v~~~~g 262 (343)
T TIGR02244 185 RDPKLPLFLSKLKEHGKKLFLLTNSDYDYTD-KGMKYLLGPFLGEHDWRDYFDVVIVDAR-KPGFFTEGRPFRQVDVETG 262 (343)
T ss_pred cchhHHHHHHHHHHCCCeEEEEeCCCHHHHH-HHHHHhhCCcccccchHhhCcEEEeCCC-CCcccCCCCceEEEeCCCC
Confidence 4677888888888754458899999886532 222332 3 3455554443221 11000
Q ss_pred -CCCcH-------HH-----HHHHHHHhCCCCCcEEEEcCChhhHHHHHH-HcCCeEEEEccC
Q 025117 175 -GKPST-------FM-----MDYLANKFGIQKSQICMVGDRLDTDILFGQ-NGGCKTLLVLSG 223 (257)
Q Consensus 175 -gKP~p-------~~-----~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~-~aG~~ti~V~~G 223 (257)
.|+.. .+ +....+.+++++++++||||++.+||.+|+ .+||+|++|..-
T Consensus 263 ~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI~pE 325 (343)
T TIGR02244 263 SLKWGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGWRTAAIIPE 325 (343)
T ss_pred cccCCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEECCcchHHHHhhHHhcCcEEEEEchh
Confidence 11111 11 345667789999999999999999999998 999999999863
No 95
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.20 E-value=9.3e-07 Score=81.91 Aligned_cols=93 Identities=19% Similarity=0.119 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCcccc-----------CCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHH
Q 025117 117 NYYKVQYGTLCIRENPGCLFIATNRDAVTHL-----------TDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYL 185 (257)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~-----------~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~ 185 (257)
.|+.+.+.+..|++.+-.++|+||+.....- ...+...|+ .++.+ .+.....++||+|.|+.++
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgi--pfdvi---ia~~~~~~RKP~pGm~~~a 272 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGV--PFQVF---IAIGAGFYRKPLTGMWDHL 272 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCC--ceEEE---EeCCCCCCCCCCHHHHHHH
Confidence 4788899999998754557889998773210 000111111 12211 1222345689999999999
Q ss_pred HHHhC----CCCCcEEEEcCChhhHHHHHHHcCC
Q 025117 186 ANKFG----IQKSQICMVGDRLDTDILFGQNGGC 215 (257)
Q Consensus 186 ~~~~~----~~~~~~~~IGD~~~~Di~~A~~aG~ 215 (257)
+++++ +++++++||||+ ..|++.|+++|-
T Consensus 273 ~~~~~~~~~Id~~~S~~VGDa-agr~~~g~~ag~ 305 (526)
T TIGR01663 273 KEEANDGTEIQEDDCFFVGDA-AGRPANGKAAGK 305 (526)
T ss_pred HHhcCcccCCCHHHeEEeCCc-ccchHHHHhcCC
Confidence 99984 899999999999 688777776664
No 96
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=98.20 E-value=4.8e-07 Score=74.06 Aligned_cols=89 Identities=17% Similarity=0.189 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHHHHcCCCc-eEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCC
Q 025117 115 YFNYYKVQYGTLCIRENPGC-LFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQK 193 (257)
Q Consensus 115 ~~~~~~~~~~~~~l~~~~~~-~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~ 193 (257)
...++++..++..|++ .|+ ..++|+..... ........|+.. .+ ... . . .+||++.+|..+++.++.++
T Consensus 126 d~~~~~~~~~l~~L~~-~Gi~~~i~TGD~~~~-a~~~~~~lgi~~---~~--v~a-~-~-~~kP~~k~~~~~i~~l~~~~ 195 (215)
T PF00702_consen 126 DPLRPGAKEALQELKE-AGIKVAILTGDNEST-ASAIAKQLGIFD---SI--VFA-R-V-IGKPEPKIFLRIIKELQVKP 195 (215)
T ss_dssp EEBHTTHHHHHHHHHH-TTEEEEEEESSEHHH-HHHHHHHTTSCS---EE--EEE-S-H-ETTTHHHHHHHHHHHHTCTG
T ss_pred Ccchhhhhhhhhhhhc-cCcceeeeecccccc-cccccccccccc---cc--ccc-c-c-cccccchhHHHHHHHHhcCC
Confidence 3567889999999987 465 66667543322 111112223200 00 000 0 0 16999999999999999999
Q ss_pred CcEEEEcCChhhHHHHHHHcC
Q 025117 194 SQICMVGDRLDTDILFGQNGG 214 (257)
Q Consensus 194 ~~~~~IGD~~~~Di~~A~~aG 214 (257)
++|+||||.+ +|+.++++||
T Consensus 196 ~~v~~vGDg~-nD~~al~~Ag 215 (215)
T PF00702_consen 196 GEVAMVGDGV-NDAPALKAAG 215 (215)
T ss_dssp GGEEEEESSG-GHHHHHHHSS
T ss_pred CEEEEEccCH-HHHHHHHhCc
Confidence 9999999995 9999999997
No 97
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=98.04 E-value=7.5e-06 Score=64.50 Aligned_cols=98 Identities=17% Similarity=0.090 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHH---hccCC--------CccccCCCcHHHHHHH
Q 025117 117 NYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFV---GSTQR--------EPLVVGKPSTFMMDYL 185 (257)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~---~~~~~--------~~~~~gKP~p~~~~~~ 185 (257)
-++.+.++++.+.+.+..++|+||....... ........+...+. ...+. ..-.++||.+-|++.+
T Consensus 30 ~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~---~~~~~~~~~~~ki~~il~~l~ip~~~~~a~~~d~~RKP~~GM~~~~ 106 (159)
T PF08645_consen 30 FPPGVPEALRELHKKGYKIVIVTNQSGIGRG---MGEKDLENFHEKIENILKELGIPIQVYAAPHKDPCRKPNPGMWEFA 106 (159)
T ss_dssp C-TTHHHHHHHHHHTTEEEEEEEE-CCCCCT---BTCCHHHHHHHHHHHHHHHCTS-EEEEECGCSSTTSTTSSHHHHHH
T ss_pred cchhHHHHHHHHHhcCCeEEEEeCccccccc---cccchHHHHHHHHHHHHHHcCCceEEEecCCCCCCCCCchhHHHHH
Confidence 3445788888887755558888999875421 01111122222221 11111 1125899999999999
Q ss_pred HHHhC----CCCCcEEEEcCC----------hhhHHHHHHHcCCeE
Q 025117 186 ANKFG----IQKSQICMVGDR----------LDTDILFGQNGGCKT 217 (257)
Q Consensus 186 ~~~~~----~~~~~~~~IGD~----------~~~Di~~A~~aG~~t 217 (257)
++.+. ++.++++||||. -.+|...|.++|++.
T Consensus 107 ~~~~~~~~~id~~~Sf~VGDaagr~~~~~d~s~~D~~fA~N~gi~f 152 (159)
T PF08645_consen 107 LKDYNDGVEIDLANSFYVGDAAGRSKKKKDFSDSDRKFALNCGIKF 152 (159)
T ss_dssp CCCTSTT--S-CCC-EEEESSCHCTB-S--S--HHHHHHHHHT--E
T ss_pred HHhccccccccccceEEEeccCCCCCcccccChhHHHHHHHcCCcc
Confidence 99886 488999999994 258999999999974
No 98
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=97.93 E-value=4.7e-06 Score=66.86 Aligned_cols=95 Identities=12% Similarity=-0.007 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccC-----------------CCccccCCCcH
Q 025117 117 NYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQ-----------------REPLVVGKPST 179 (257)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~-----------------~~~~~~gKP~p 179 (257)
.++.+.+.+..+++.+...+|+||...... ...+...++..+|+.+.+... ......|.+++
T Consensus 73 l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~-~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~K~ 151 (188)
T TIGR01489 73 IDPGFKEFIAFIKEHGIDFIVISDGNDFFI-DPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGCCKG 151 (188)
T ss_pred CCccHHHHHHHHHHcCCcEEEEeCCcHHHH-HHHHHHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCCCCCHH
Confidence 344567777788764445778888765432 222334455555544443211 01123455568
Q ss_pred HHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCe
Q 025117 180 FMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCK 216 (257)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ 216 (257)
.+++.+++.. +++++||||+ .+|+.+|+++++-
T Consensus 152 ~~~~~~~~~~---~~~~i~iGD~-~~D~~aa~~~d~~ 184 (188)
T TIGR01489 152 KVIHKLSEPK---YQHIIYIGDG-VTDVCPAKLSDVV 184 (188)
T ss_pred HHHHHHHhhc---CceEEEECCC-cchhchHhcCCcc
Confidence 8888887664 7899999999 6999999998653
No 99
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=97.81 E-value=7.5e-05 Score=70.13 Aligned_cols=116 Identities=9% Similarity=-0.013 Sum_probs=76.6
Q ss_pred CCCHHHHHHHHHHHHcCCC-ceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCC
Q 025117 115 YFNYYKVQYGTLCIRENPG-CLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQK 193 (257)
Q Consensus 115 ~~~~~~~~~~~~~l~~~~~-~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~ 193 (257)
...+++..++++.|++.+- ...++||.+.... .......|+..++..+ .|.+. ..++++++...
T Consensus 361 d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a-~~i~~~lgi~~~f~~~------------~p~~K--~~~i~~l~~~~ 425 (536)
T TIGR01512 361 DEPRPDAAEAIAELKALGIEKVVMLTGDRRAVA-ERVARELGIDEVHAEL------------LPEDK--LEIVKELREKY 425 (536)
T ss_pred ccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHH-HHHHHHcCChhhhhcc------------CcHHH--HHHHHHHHhcC
Confidence 3578999999999987433 4678888766442 2233445554433211 12221 23555555566
Q ss_pred CcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEE--CChhhHHHHHH
Q 025117 194 SQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYT--NKISDFLSLKA 254 (257)
Q Consensus 194 ~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~--~~l~el~~~l~ 254 (257)
++++||||+ ..|+.++++||+ .|.+|....+... ..+|+++ +++.+|.+++.
T Consensus 426 ~~v~~vGDg-~nD~~al~~A~v---gia~g~~~~~~~~-----~~ad~vl~~~~l~~l~~~i~ 479 (536)
T TIGR01512 426 GPVAMVGDG-INDAPALAAADV---GIAMGASGSDVAI-----ETADVVLLNDDLSRLPQAIR 479 (536)
T ss_pred CEEEEEeCC-HHHHHHHHhCCE---EEEeCCCccHHHH-----HhCCEEEECCCHHHHHHHHH
Confidence 899999999 699999999994 6777743322222 3689998 89999987765
No 100
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=97.75 E-value=9e-05 Score=62.51 Aligned_cols=73 Identities=18% Similarity=0.005 Sum_probs=60.7
Q ss_pred ccCCCcH----HHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHc-------CCeEEEEccCCCChhhhcCCCCCCCCcE
Q 025117 173 VVGKPST----FMMDYLANKFGIQKSQICMVGDRLDTDILFGQNG-------GCKTLLVLSGVTSLSMLQSPNNSIQPDF 241 (257)
Q Consensus 173 ~~gKP~p----~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~a-------G~~ti~V~~G~~~~~~~~~~~~~~~pd~ 241 (257)
...||.. ..++.++++++..+.+++||||+ .+|+.+.+.+ |..++.|.+|.. ...++|
T Consensus 159 ~e~~p~~~~Kg~a~~~~~~~~~~~~~~~i~iGD~-~~D~~~~~~~~~~~~~~g~~~v~v~~g~~----------~~~A~~ 227 (244)
T TIGR00685 159 VELKPRFVNKGEIVKRLLWHQPGSGISPVYLGDD-ITDEDAFRVVNNQWGNYGFYPVPIGSGSK----------KTVAKF 227 (244)
T ss_pred EEEeeCCCCHHHHHHHHHHhcccCCCceEEEcCC-CcHHHHHHHHhcccCCCCeEEEEEecCCc----------CCCceE
Confidence 3456764 88999999999999999999999 6999999998 778888875521 146899
Q ss_pred EECChhhHHHHHHhh
Q 025117 242 YTNKISDFLSLKAAA 256 (257)
Q Consensus 242 ~~~~l~el~~~l~~~ 256 (257)
++++..++.++|+.+
T Consensus 228 ~~~~~~~v~~~L~~l 242 (244)
T TIGR00685 228 HLTGPQQVLEFLGLL 242 (244)
T ss_pred eCCCHHHHHHHHHHH
Confidence 999999999988764
No 101
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=97.72 E-value=5.4e-05 Score=71.44 Aligned_cols=115 Identities=10% Similarity=0.028 Sum_probs=74.3
Q ss_pred CCCHHHHHHHHHHHHcCC-CceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCC
Q 025117 115 YFNYYKVQYGTLCIRENP-GCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQK 193 (257)
Q Consensus 115 ~~~~~~~~~~~~~l~~~~-~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~ 193 (257)
...|+++.++++.|++.+ -...++||...... .......|+..++..+ ..++++. ++++++..+
T Consensus 383 d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a-~~i~~~lgi~~~f~~~----------~p~~K~~----~v~~l~~~~ 447 (556)
T TIGR01525 383 DQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAA-EAVAAELGIDEVHAEL----------LPEDKLA----IVKELQEEG 447 (556)
T ss_pred ccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHH-HHHHHHhCCCeeeccC----------CHHHHHH----HHHHHHHcC
Confidence 457899999999998744 34778898766432 2222344443332211 0122233 444454467
Q ss_pred CcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEEC--ChhhHHHHHH
Q 025117 194 SQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTN--KISDFLSLKA 254 (257)
Q Consensus 194 ~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~--~l~el~~~l~ 254 (257)
++++||||+ ..|+.++++|| +.|.+|... +... ..+|+++. ++..+.+++.
T Consensus 448 ~~v~~vGDg-~nD~~al~~A~---vgia~g~~~-~~~~-----~~Ad~vi~~~~~~~l~~~i~ 500 (556)
T TIGR01525 448 GVVAMVGDG-INDAPALAAAD---VGIAMGAGS-DVAI-----EAADIVLLNDDLSSLPTAID 500 (556)
T ss_pred CEEEEEECC-hhHHHHHhhCC---EeEEeCCCC-HHHH-----HhCCEEEeCCCHHHHHHHHH
Confidence 799999999 69999999999 677777322 2222 36899887 7888877654
No 102
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=97.71 E-value=2.7e-05 Score=63.37 Aligned_cols=100 Identities=11% Similarity=0.041 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHH-HHh-c----cCC--CccccCCCcHHHHHHHHHH
Q 025117 117 NYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGA-FVG-S----TQR--EPLVVGKPSTFMMDYLANK 188 (257)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~-i~~-~----~~~--~~~~~gKP~p~~~~~~~~~ 188 (257)
.++.+.+.++.+++.+...+|+||....+. .......|+..++.. +.. . +|. .+...|+++...++..+++
T Consensus 88 ~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v-~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~~~ 166 (202)
T TIGR01490 88 LYPEARDLIRWHKAEGHTIVLVSASLTILV-KPLARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAELLAE 166 (202)
T ss_pred ccHHHHHHHHHHHHCCCEEEEEeCCcHHHH-HHHHHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHHHHHHH
Confidence 466777888888764445778888876442 212233343333221 211 1 111 1123467778889999999
Q ss_pred hCCCCCcEEEEcCChhhHHHHHHHcCCeEE
Q 025117 189 FGIQKSQICMVGDRLDTDILFGQNGGCKTL 218 (257)
Q Consensus 189 ~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti 218 (257)
.+++++++++|||+ .+|+.+++.+|...+
T Consensus 167 ~~~~~~~~~~~gDs-~~D~~~~~~a~~~~~ 195 (202)
T TIGR01490 167 EQIDLKDSYAYGDS-ISDLPLLSLVGHPYV 195 (202)
T ss_pred cCCCHHHcEeeeCC-cccHHHHHhCCCcEE
Confidence 99999999999999 599999999996654
No 103
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=97.49 E-value=0.00028 Score=57.88 Aligned_cols=124 Identities=10% Similarity=-0.056 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHH-HHhcc-CC--CccccCCCcHHHHHHHHHHhCCC
Q 025117 117 NYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGA-FVGST-QR--EPLVVGKPSTFMMDYLANKFGIQ 192 (257)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~-i~~~~-~~--~~~~~gKP~p~~~~~~~~~~~~~ 192 (257)
.++...+.+..++++ +..+|+|++...+. .......|+..++.. +.... |. ......||.+......+++.+
T Consensus 69 l~pga~ell~~lk~~-~~~~IVS~~~~~~~-~~il~~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~~l~~l~~~~-- 144 (203)
T TIGR02137 69 PLEGAVEFVDWLRER-FQVVILSDTFYEFS-QPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKSLY-- 144 (203)
T ss_pred CCccHHHHHHHHHhC-CeEEEEeCChHHHH-HHHHHHcCCchhhceeeEEecCCeeECeeecCcchHHHHHHHHHhhC--
Confidence 466778888888874 67888898877543 223345555544321 11111 11 111235666666655556555
Q ss_pred CCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcE-EECChhhHHHHHHh
Q 025117 193 KSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDF-YTNKISDFLSLKAA 255 (257)
Q Consensus 193 ~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~-~~~~l~el~~~l~~ 255 (257)
.+++||||+ .+|+.+++.+|+..++-.. +.+.+ ..|++ ++.+.+||.+.+.-
T Consensus 145 -~~~v~vGDs-~nDl~ml~~Ag~~ia~~ak-----~~~~~----~~~~~~~~~~~~~~~~~~~~ 197 (203)
T TIGR02137 145 -YRVIAAGDS-YNDTTMLSEAHAGILFHAP-----ENVIR----EFPQFPAVHTYEDLKREFLK 197 (203)
T ss_pred -CCEEEEeCC-HHHHHHHHhCCCCEEecCC-----HHHHH----hCCCCCcccCHHHHHHHHHH
Confidence 379999999 6999999999988765442 22221 23444 56788998877653
No 104
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=97.35 E-value=0.00045 Score=58.83 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=50.5
Q ss_pred CcHHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhh--HHHHHH
Q 025117 177 PSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISD--FLSLKA 254 (257)
Q Consensus 177 P~p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~e--l~~~l~ 254 (257)
.++..++.+++.+|++++++++|||+ ..|+.+++.+|+ .|..|.. .+++. ..+++++++-.+ +.+.|+
T Consensus 199 ~K~~~l~~l~~~~gi~~~e~i~~GD~-~NDi~m~~~ag~---~vamgna-~~~lk-----~~Ad~v~~~n~~dGv~~~l~ 268 (272)
T PRK10530 199 SKGKRLTQWVEAQGWSMKNVVAFGDN-FNDISMLEAAGL---GVAMGNA-DDAVK-----ARADLVIGDNTTPSIAEFIY 268 (272)
T ss_pred ChHHHHHHHHHHcCCCHHHeEEeCCC-hhhHHHHHhcCc---eEEecCc-hHHHH-----HhCCEEEecCCCCcHHHHHH
Confidence 34578899999999999999999999 799999999996 3444543 34454 368888866443 444443
No 105
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=97.32 E-value=0.00015 Score=57.48 Aligned_cols=94 Identities=14% Similarity=-0.019 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhc------cCC---CccccCCCcHHHHHHHHHH
Q 025117 118 YYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGS------TQR---EPLVVGKPSTFMMDYLANK 188 (257)
Q Consensus 118 ~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~------~~~---~~~~~gKP~p~~~~~~~~~ 188 (257)
++.+.+.+..+++.+....|+|+....+. .......|+..++...... ++. +....+..++..++..+++
T Consensus 75 ~~g~~~~l~~l~~~g~~~~ivS~~~~~~i-~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~~~~~~ 153 (177)
T TIGR01488 75 RPGARELISWLKERGIDTVIVSGGFDFFV-EPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLKELLEE 153 (177)
T ss_pred CcCHHHHHHHHHHCCCEEEEECCCcHHHH-HHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHHHHHHH
Confidence 45667777778764445677788766432 2222333443332211111 110 0112344456788888888
Q ss_pred hCCCCCcEEEEcCChhhHHHHHHHc
Q 025117 189 FGIQKSQICMVGDRLDTDILFGQNG 213 (257)
Q Consensus 189 ~~~~~~~~~~IGD~~~~Di~~A~~a 213 (257)
++++++++++|||+ .+|+.+++.+
T Consensus 154 ~~~~~~~~~~iGDs-~~D~~~~~~a 177 (177)
T TIGR01488 154 SKITLKKIIAVGDS-VNDLPMLKLA 177 (177)
T ss_pred hCCCHHHEEEEeCC-HHHHHHHhcC
Confidence 89999999999999 6999998764
No 106
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=97.28 E-value=0.0027 Score=60.09 Aligned_cols=113 Identities=11% Similarity=0.025 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCc
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQ 195 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~ 195 (257)
..+++..++++.|++.+-...++||...... .......|+. ++ ... ..++++.++ ++++.++++
T Consensus 405 ~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a-~~ia~~lgi~-~~------~~~----~p~~K~~~v----~~l~~~~~~ 468 (562)
T TIGR01511 405 QLRPEAKEVIQALKRRGIEPVMLTGDNRKTA-KAVAKELGIN-VR------AEV----LPDDKAALI----KELQEKGRV 468 (562)
T ss_pred cccHHHHHHHHHHHHcCCeEEEEcCCCHHHH-HHHHHHcCCc-EE------ccC----ChHHHHHHH----HHHHHcCCE
Confidence 4678889999999874334667788766432 2222333432 11 011 122333433 344446789
Q ss_pred EEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEE--CChhhHHHHHH
Q 025117 196 ICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYT--NKISDFLSLKA 254 (257)
Q Consensus 196 ~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~--~~l~el~~~l~ 254 (257)
++||||+ ..|+.+++++|+ .|.+|.... ... ..+|+++ +++.+|.+++.
T Consensus 469 v~~VGDg-~nD~~al~~A~v---gia~g~g~~--~a~----~~Advvl~~~~l~~l~~~i~ 519 (562)
T TIGR01511 469 VAMVGDG-INDAPALAQADV---GIAIGAGTD--VAI----EAADVVLMRNDLNDVATAID 519 (562)
T ss_pred EEEEeCC-CccHHHHhhCCE---EEEeCCcCH--HHH----hhCCEEEeCCCHHHHHHHHH
Confidence 9999999 599999999995 456664332 221 3689988 58888887664
No 107
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=97.05 E-value=0.00036 Score=59.65 Aligned_cols=93 Identities=14% Similarity=0.055 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHh---ccCCCccccCCCcH---------HHHHHHH
Q 025117 119 YKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVG---STQREPLVVGKPST---------FMMDYLA 186 (257)
Q Consensus 119 ~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~---~~~~~~~~~gKP~p---------~~~~~~~ 186 (257)
+...+.+..|++++-..+|+|+.-... ....+...++...+..+.+ ....+-...|||.| .+++.+.
T Consensus 124 pG~~efl~~L~~~GIpv~IvS~G~~~~-Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v~~~~~ 202 (277)
T TIGR01544 124 DGYENFFDKLQQHSIPVFIFSAGIGNV-LEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDVALRNT 202 (277)
T ss_pred cCHHHHHHHHHHCCCcEEEEeCCcHHH-HHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHHHHHHH
Confidence 345566777766433467777765532 1112222232111111100 01111234478888 7777788
Q ss_pred HHhC--CCCCcEEEEcCChhhHHHHHHHc
Q 025117 187 NKFG--IQKSQICMVGDRLDTDILFGQNG 213 (257)
Q Consensus 187 ~~~~--~~~~~~~~IGD~~~~Di~~A~~a 213 (257)
+.++ .++++|++|||+ .+|+.+|.-.
T Consensus 203 ~~~~~~~~~~~vI~vGDs-~~Dl~ma~g~ 230 (277)
T TIGR01544 203 EYFNQLKDRSNIILLGDS-QGDLRMADGV 230 (277)
T ss_pred HHhCccCCcceEEEECcC-hhhhhHhcCC
Confidence 8888 789999999999 5999998744
No 108
>PRK08238 hypothetical protein; Validated
Probab=96.83 E-value=0.0015 Score=60.39 Aligned_cols=96 Identities=16% Similarity=0.072 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCcEE
Q 025117 118 YYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQIC 197 (257)
Q Consensus 118 ~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~ 197 (257)
++++.+.++.+++.+....|+||++.... .....+.|+ |+.+....+.. ..||++.. +.+.+.++ .++++
T Consensus 74 ~pga~e~L~~lk~~G~~v~LaTas~~~~a-~~i~~~lGl---Fd~Vigsd~~~---~~kg~~K~-~~l~~~l~--~~~~~ 143 (479)
T PRK08238 74 NEEVLDYLRAERAAGRKLVLATASDERLA-QAVAAHLGL---FDGVFASDGTT---NLKGAAKA-AALVEAFG--ERGFD 143 (479)
T ss_pred ChhHHHHHHHHHHCCCEEEEEeCCCHHHH-HHHHHHcCC---CCEEEeCCCcc---ccCCchHH-HHHHHHhC--ccCee
Confidence 36677888888775455788999888553 222233333 34443333322 35665543 23445554 35689
Q ss_pred EEcCChhhHHHHHHHcCCeEEEEccCCC
Q 025117 198 MVGDRLDTDILFGQNGGCKTLLVLSGVT 225 (257)
Q Consensus 198 ~IGD~~~~Di~~A~~aG~~ti~V~~G~~ 225 (257)
|+||+ ..|+..++.+| +.+.|..+..
T Consensus 144 yvGDS-~~Dlp~~~~A~-~av~Vn~~~~ 169 (479)
T PRK08238 144 YAGNS-AADLPVWAAAR-RAIVVGASPG 169 (479)
T ss_pred EecCC-HHHHHHHHhCC-CeEEECCCHH
Confidence 99999 69999999999 8889987654
No 109
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=96.74 E-value=0.0011 Score=55.77 Aligned_cols=91 Identities=13% Similarity=0.094 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCcccc-CCCcccccCch-HHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCC
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHL-TDAQEWAGGGS-MVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQK 193 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~-~~~~~~~~~g~-~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~ 193 (257)
-.|+...++++.|++.+....++||+.+.... ...+...|+.. .++.+.++.... ...+..++++++.++
T Consensus 24 ~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~~Ii~s~~~~--------~~~l~~~~~~~~~~~ 95 (242)
T TIGR01459 24 HTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPEMIISSGEIA--------VQMILESKKRFDIRN 95 (242)
T ss_pred ccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccceEEccHHHH--------HHHHHhhhhhccCCC
Confidence 45888999999998754457788998663211 01223344443 344443321110 145666677788889
Q ss_pred CcEEEEcCChhhHHHHHHHcCC
Q 025117 194 SQICMVGDRLDTDILFGQNGGC 215 (257)
Q Consensus 194 ~~~~~IGD~~~~Di~~A~~aG~ 215 (257)
++++||||+ ..|+..-..+|.
T Consensus 96 ~~~~~vGd~-~~d~~~~~~~~~ 116 (242)
T TIGR01459 96 GIIYLLGHL-ENDIINLMQCYT 116 (242)
T ss_pred ceEEEeCCc-ccchhhhcCCCc
Confidence 999999999 578876654443
No 110
>PRK10671 copA copper exporting ATPase; Provisional
Probab=96.71 E-value=0.0065 Score=60.23 Aligned_cols=115 Identities=14% Similarity=0.036 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHHcCCCc-eEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCC
Q 025117 116 FNYYKVQYGTLCIRENPGC-LFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKS 194 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~-~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~ 194 (257)
..+++..+++..|++ .|+ ..++|+..... ........|+..++ ..-.|+--..++++++..++
T Consensus 650 ~~r~~a~~~i~~L~~-~gi~v~~~Tgd~~~~-a~~ia~~lgi~~~~--------------~~~~p~~K~~~i~~l~~~~~ 713 (834)
T PRK10671 650 PLRSDSVAALQRLHK-AGYRLVMLTGDNPTT-ANAIAKEAGIDEVI--------------AGVLPDGKAEAIKRLQSQGR 713 (834)
T ss_pred cchhhHHHHHHHHHH-CCCeEEEEcCCCHHH-HHHHHHHcCCCEEE--------------eCCCHHHHHHHHHHHhhcCC
Confidence 456778888888886 455 56677755532 11122233332111 11112223456777777888
Q ss_pred cEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHHHHHH
Q 025117 195 QICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKA 254 (257)
Q Consensus 195 ~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~~~l~ 254 (257)
+++||||+ ..|+.++++||+ .|.+|..+...... ..+.+..+++.+|..++.
T Consensus 714 ~v~~vGDg-~nD~~al~~Agv---gia~g~g~~~a~~~----ad~vl~~~~~~~i~~~i~ 765 (834)
T PRK10671 714 QVAMVGDG-INDAPALAQADV---GIAMGGGSDVAIET----AAITLMRHSLMGVADALA 765 (834)
T ss_pred EEEEEeCC-HHHHHHHHhCCe---eEEecCCCHHHHHh----CCEEEecCCHHHHHHHHH
Confidence 99999999 599999999998 55566555544432 346666789999988775
No 111
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=96.69 E-value=0.012 Score=46.75 Aligned_cols=100 Identities=14% Similarity=0.173 Sum_probs=65.4
Q ss_pred CCHHHHHHHHHHHHcCCCc-eEEEecCCCccccCCCcc--cccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCC
Q 025117 116 FNYYKVQYGTLCIRENPGC-LFIATNRDAVTHLTDAQE--WAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQ 192 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~-~~i~tn~d~~~~~~~~~~--~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~ 192 (257)
.-|++...+++.-+. .|+ ++|-|+... ++ ..+. +...|.+-..+....+.. .-+|-...-|..+....|++
T Consensus 103 hlypDav~~ik~wk~-~g~~vyiYSSGSV--~A-QkL~Fghs~agdL~~lfsGyfDtt--iG~KrE~~SY~kIa~~iGl~ 176 (229)
T COG4229 103 HLYPDAVQAIKRWKA-LGMRVYIYSSGSV--KA-QKLFFGHSDAGDLNSLFSGYFDTT--IGKKRESQSYAKIAGDIGLP 176 (229)
T ss_pred ccCHhHHHHHHHHHH-cCCcEEEEcCCCc--hh-HHHhhcccccccHHhhhcceeecc--ccccccchhHHHHHHhcCCC
Confidence 357776666665554 455 555555443 11 1111 112343333333322221 22577888999999999999
Q ss_pred CCcEEEEcCChhhHHHHHHHcCCeEEEEcc
Q 025117 193 KSQICMVGDRLDTDILFGQNGGCKTLLVLS 222 (257)
Q Consensus 193 ~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~ 222 (257)
|.+++++.|++ ..+.+|+.+||.|+++.+
T Consensus 177 p~eilFLSDn~-~EL~AA~~vGl~t~l~~R 205 (229)
T COG4229 177 PAEILFLSDNP-EELKAAAGVGLATGLAVR 205 (229)
T ss_pred chheEEecCCH-HHHHHHHhcchheeeeec
Confidence 99999999995 899999999999998854
No 112
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=96.57 E-value=0.0057 Score=51.57 Aligned_cols=50 Identities=24% Similarity=0.373 Sum_probs=44.5
Q ss_pred cCCCcHHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCC
Q 025117 174 VGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGV 224 (257)
Q Consensus 174 ~gKP~p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~ 224 (257)
.++++...++.+++.++++++++++|||+ ..|+.+.+.+|..++.|..+.
T Consensus 164 ~~~~K~~al~~l~~~~~i~~~~~i~~GD~-~ND~~ml~~~~~~~va~~na~ 213 (249)
T TIGR01485 164 QGSGKGQALQYLLQKLAMEPSQTLVCGDS-GNDIELFEIGSVRGVIVSNAQ 213 (249)
T ss_pred CCCChHHHHHHHHHHcCCCccCEEEEECC-hhHHHHHHccCCcEEEECCCH
Confidence 36778888999999999999999999999 699999999888899997653
No 113
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=96.53 E-value=0.0061 Score=50.93 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=39.8
Q ss_pred CCCcHHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEcc
Q 025117 175 GKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLS 222 (257)
Q Consensus 175 gKP~p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~ 222 (257)
+++++..++.++++++++++++++|||+ .+|+.+.+.+| .++.|..
T Consensus 157 ~~~K~~al~~l~~~~g~~~~~~i~~GD~-~nD~~ml~~~~-~~iav~n 202 (236)
T TIGR02471 157 RASKGLALRYLSYRWGLPLEQILVAGDS-GNDEEMLRGLT-LGVVVGN 202 (236)
T ss_pred CCChHHHHHHHHHHhCCCHHHEEEEcCC-ccHHHHHcCCC-cEEEEcC
Confidence 6777888999999999999999999999 69999999987 5555654
No 114
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=96.40 E-value=0.0053 Score=50.65 Aligned_cols=61 Identities=23% Similarity=0.314 Sum_probs=46.5
Q ss_pred CCCcHHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECC
Q 025117 175 GKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNK 245 (257)
Q Consensus 175 gKP~p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~ 245 (257)
+.++...++.+++++|++++++++|||+ ..|+.+.+.+|+. +.+..+ .+++. ..++++..+
T Consensus 147 ~~~K~~~i~~l~~~~~i~~~~~i~~GD~-~NDi~m~~~ag~~-vam~Na---~~~~k-----~~A~~vt~~ 207 (225)
T TIGR01482 147 GVNKGVAVKKLKEKLGIKPGETLVCGDS-ENDIDLFEVPGFG-VAVANA---QPELK-----EWADYVTES 207 (225)
T ss_pred CCCHHHHHHHHHHHhCCCHHHEEEECCC-HhhHHHHHhcCce-EEcCCh---hHHHH-----HhcCeecCC
Confidence 5566678899999999999999999999 7999999999974 555543 22333 246776654
No 115
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=96.33 E-value=0.00076 Score=53.51 Aligned_cols=108 Identities=18% Similarity=0.098 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHcCCCc-eEEEecCCCccccCCCcccccCc----hHHHHHHhccCCCccccCCCcHHHHHHHHHHhC
Q 025117 116 FNYYKVQYGTLCIRENPGC-LFIATNRDAVTHLTDAQEWAGGG----SMVGAFVGSTQREPLVVGKPSTFMMDYLANKFG 190 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~-~~i~tn~d~~~~~~~~~~~~~~g----~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~ 190 (257)
--|+++...+..|+. .|. +.+||-.+..-.+...+..+++. ...... .......++ .-.+..-|+.+.+..|
T Consensus 45 ~lypdv~~iL~~L~~-~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~-~~F~~~eI~-~gsK~~Hf~~i~~~tg 121 (169)
T PF12689_consen 45 SLYPDVPEILQELKE-RGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLI-EYFDYLEIY-PGSKTTHFRRIHRKTG 121 (169)
T ss_dssp ---TTHHHHHHHHHH-CT--EEEEE--S-HHHHHHHHHHTT-C-----------CCECEEEES-SS-HHHHHHHHHHHH-
T ss_pred EeCcCHHHHHHHHHH-CCCEEEEEECCCChHHHHHHHHhcCCCccccccccch-hhcchhhee-cCchHHHHHHHHHhcC
Confidence 357789999999987 566 55665333321112122222222 000111 111111122 2367788999999999
Q ss_pred CCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCCh
Q 025117 191 IQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSL 227 (257)
Q Consensus 191 ~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~ 227 (257)
++.++++++.|. ...+.-..+.|+.+++|..|.+..
T Consensus 122 I~y~eMlFFDDe-~~N~~~v~~lGV~~v~v~~Glt~~ 157 (169)
T PF12689_consen 122 IPYEEMLFFDDE-SRNIEVVSKLGVTCVLVPDGLTWD 157 (169)
T ss_dssp --GGGEEEEES--HHHHHHHHTTT-EEEE-SSS--HH
T ss_pred CChhHEEEecCc-hhcceeeEecCcEEEEeCCCCCHH
Confidence 999999999999 799999999999999999987644
No 116
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=96.21 E-value=0.0073 Score=50.02 Aligned_cols=62 Identities=23% Similarity=0.325 Sum_probs=47.4
Q ss_pred CCCcHHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECCh
Q 025117 175 GKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKI 246 (257)
Q Consensus 175 gKP~p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l 246 (257)
+..++..++.+++.+|++++++++|||+ ..|+.+.+.+|+. +.+..+. +.+. ..++++..+-
T Consensus 155 ~~~Kg~al~~l~~~~~i~~~~~i~~GD~-~NDi~m~~~ag~~-vam~Na~---~~vk-----~~a~~v~~~n 216 (230)
T PRK01158 155 GVNKGTGLKKLAELMGIDPEEVAAIGDS-ENDLEMFEVAGFG-VAVANAD---EELK-----EAADYVTEKS 216 (230)
T ss_pred CCChHHHHHHHHHHhCCCHHHEEEECCc-hhhHHHHHhcCce-EEecCcc---HHHH-----HhcceEecCC
Confidence 5556788899999999999999999999 6999999999975 4555432 2333 2467777653
No 117
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=96.01 E-value=0.011 Score=48.01 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=38.7
Q ss_pred cCCCcHHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeE
Q 025117 174 VGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKT 217 (257)
Q Consensus 174 ~gKP~p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~t 217 (257)
.+.+++..++.++++++++++++++|||+ .+|+.+.+.+|+..
T Consensus 160 ~~~~K~~~~~~~~~~~~~~~~~~~~~GD~-~nD~~~~~~~~~~v 202 (204)
T TIGR01484 160 AGVDKGSALQALLKELNGKRDEILAFGDS-GNDEEMFEVAGLAV 202 (204)
T ss_pred CCCChHHHHHHHHHHhCCCHHHEEEEcCC-HHHHHHHHHcCCce
Confidence 36777899999999999999999999999 79999999999754
No 118
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=95.86 E-value=0.34 Score=40.89 Aligned_cols=71 Identities=18% Similarity=0.286 Sum_probs=57.8
Q ss_pred CCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHHHHHHHHHhcCCCCCCEEEEEcCHHHHHHHHHcCCeee
Q 025117 6 GKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDGILKELELAGFQYL 81 (257)
Q Consensus 6 g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~~~~~~~l~~~g~~~~ 81 (257)
-..|+++|+|+..+--.+.+.++..|++++- -++|++.....||+..+. ..|+-......+..-+.|+...
T Consensus 36 ~VEVVllSRNspdTGlRv~nSI~hygL~ItR-~~ft~G~~~~~Yl~af~v----~LFLSan~~DV~~Ai~~G~~Aa 106 (264)
T PF06189_consen 36 LVEVVLLSRNSPDTGLRVFNSIRHYGLDITR-AAFTGGESPYPYLKAFNV----DLFLSANEDDVQEAIDAGIPAA 106 (264)
T ss_pred ceEEEEEecCCHHHHHHHHHhHHHhCCccee-eeecCCCCHHHHHHHhCC----ceEeeCCHHHHHHHHHcCCCcE
Confidence 3468999999999999999999999999874 588999999999997643 4677777777777777787553
No 119
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=95.79 E-value=0.21 Score=37.60 Aligned_cols=116 Identities=15% Similarity=0.139 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCc-cccCCCcHHHHHHHHHHhCCCCCcE
Q 025117 118 YYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREP-LVVGKPSTFMMDYLANKFGIQKSQI 196 (257)
Q Consensus 118 ~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~-~~~gKP~p~~~~~~~~~~~~~~~~~ 196 (257)
|+.+.+.+..|... +-+++.+.|+.. .+.+ +..-.|.+. ..+.--+|++=..+++.++.+-+.|
T Consensus 32 f~ev~e~iqeL~d~--V~i~IASgDr~g------------sl~~-lae~~gi~~~rv~a~a~~e~K~~ii~eLkk~~~k~ 96 (152)
T COG4087 32 FSEVSETIQELHDM--VDIYIASGDRKG------------SLVQ-LAEFVGIPVERVFAGADPEMKAKIIRELKKRYEKV 96 (152)
T ss_pred cHhhHHHHHHHHHh--heEEEecCCcch------------HHHH-HHHHcCCceeeeecccCHHHHHHHHHHhcCCCcEE
Confidence 45566666666642 444445556522 1111 111123322 3345567788888899998777899
Q ss_pred EEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHHHHHHh
Q 025117 197 CMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKAA 255 (257)
Q Consensus 197 ~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~~~l~~ 255 (257)
+||||- .+|+.+=++|.+.-+-+..+.-+...+ ..+|+++.++.|+++++..
T Consensus 97 vmVGnG-aND~laLr~ADlGI~tiq~e~v~~r~l------~~ADvvik~i~e~ldl~~~ 148 (152)
T COG4087 97 VMVGNG-ANDILALREADLGICTIQQEGVPERLL------LTADVVLKEIAEILDLLKD 148 (152)
T ss_pred EEecCC-cchHHHhhhcccceEEeccCCcchHHH------hhchhhhhhHHHHHHHhhc
Confidence 999999 799999999987766565543333333 3689999999999988653
No 120
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=95.79 E-value=0.021 Score=47.04 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=35.3
Q ss_pred CCCcHHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEE
Q 025117 175 GKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTL 218 (257)
Q Consensus 175 gKP~p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti 218 (257)
.|++ ..+.+++.+|++++++++|||+ ..|+.+-+.+|...+
T Consensus 179 ~Kg~--al~~l~~~lgi~~~~vi~~GD~-~NDi~ml~~ag~~va 219 (221)
T TIGR02463 179 SKGK--AANWLKATYNQPDVKTLGLGDG-PNDLPLLEVADYAVV 219 (221)
T ss_pred CHHH--HHHHHHHHhCCCCCcEEEECCC-HHHHHHHHhCCceEE
Confidence 4554 5789999999999999999999 699999999996543
No 121
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=95.74 E-value=0.014 Score=58.14 Aligned_cols=128 Identities=14% Similarity=0.057 Sum_probs=80.1
Q ss_pred CCCHHHHHHHHHHHHcCCCc-eEEEecCCCccccCCCcccccCch---------HHH-----HHHhccCCCccccCCCcH
Q 025117 115 YFNYYKVQYGTLCIRENPGC-LFIATNRDAVTHLTDAQEWAGGGS---------MVG-----AFVGSTQREPLVVGKPST 179 (257)
Q Consensus 115 ~~~~~~~~~~~~~l~~~~~~-~~i~tn~d~~~~~~~~~~~~~~g~---------~~~-----~i~~~~~~~~~~~gKP~p 179 (257)
...+++..++++.+++ .|+ +.++|+...... .......|+.. -++ .+.... .+...+..++|
T Consensus 527 Dp~r~~~~~~i~~l~~-~Gi~v~miTGD~~~tA-~~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~-~~~~Vfar~~P 603 (884)
T TIGR01522 527 DPPRPGVKEAVTTLIT-GGVRIIMITGDSQETA-VSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQIV-PKVAVFARASP 603 (884)
T ss_pred CcchhHHHHHHHHHHH-CCCeEEEECCCCHHHH-HHHHHHcCCCCCCCceeEhHHhHhCCHHHHHHHh-hcCeEEEECCH
Confidence 4578889999999987 455 556677655321 11111222211 010 000000 11235667778
Q ss_pred HHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEE--CChhhHHHHHH
Q 025117 180 FMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYT--NKISDFLSLKA 254 (257)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~--~~l~el~~~l~ 254 (257)
+--..+.+.++...+.+.||||. ..|+.+.++|++ .|..|....+ ..+ ..+|+++ +++..+...+.
T Consensus 604 ~~K~~iv~~lq~~g~~v~mvGDG-vND~pAl~~AdV---Gia~g~~g~~-va~----~aaDivl~dd~~~~i~~~i~ 671 (884)
T TIGR01522 604 EHKMKIVKALQKRGDVVAMTGDG-VNDAPALKLADI---GVAMGQTGTD-VAK----EAADMILTDDDFATILSAIE 671 (884)
T ss_pred HHHHHHHHHHHHCCCEEEEECCC-cccHHHHHhCCe---eEecCCCcCH-HHH----HhcCEEEcCCCHHHHHHHHH
Confidence 77777777777667889999999 699999999994 5666643222 222 4689999 77999987654
No 122
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=95.68 E-value=0.00064 Score=53.69 Aligned_cols=94 Identities=11% Similarity=-0.053 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCch-HHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCcEE
Q 025117 119 YKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGS-MVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQIC 197 (257)
Q Consensus 119 ~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~-~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~ 197 (257)
+.+.+.+..+... --++|.|++...+.. ..+...+... +++.+ .+++.....||. |...++.+|.++++++
T Consensus 45 Pgl~eFL~~l~~~-yei~I~Ts~~~~yA~-~il~~ldp~~~~f~~~---l~r~~~~~~~~~---~~K~L~~l~~~~~~vI 116 (162)
T TIGR02251 45 PHVDEFLERVSKW-YELVIFTASLEEYAD-PVLDILDRGGKVISRR---LYRESCVFTNGK---YVKDLSLVGKDLSKVI 116 (162)
T ss_pred CCHHHHHHHHHhc-CEEEEEcCCcHHHHH-HHHHHHCcCCCEEeEE---EEccccEEeCCC---EEeEchhcCCChhhEE
Confidence 4567778777753 447788988876532 2223333221 32222 233444445665 6677888999999999
Q ss_pred EEcCChhhHHHHHHHcCCeEEEEc
Q 025117 198 MVGDRLDTDILFGQNGGCKTLLVL 221 (257)
Q Consensus 198 ~IGD~~~~Di~~A~~aG~~ti~V~ 221 (257)
||||+ ..|+.++.++|+...-..
T Consensus 117 iVDD~-~~~~~~~~~NgI~i~~f~ 139 (162)
T TIGR02251 117 IIDNS-PYSYSLQPDNAIPIKSWF 139 (162)
T ss_pred EEeCC-hhhhccCccCEeecCCCC
Confidence 99999 599999999998755443
No 123
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=95.68 E-value=0.064 Score=41.65 Aligned_cols=76 Identities=30% Similarity=0.441 Sum_probs=53.6
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechH---------HHHHHHHHhcCCCCCCEEEEEc-CHHHHH
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASS---------FAAAAYLKSIDFPKDKKVYVVG-EDGILK 71 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~---------~~~~~~l~~~~~~~~~~v~vlg-~~~~~~ 71 (257)
|++.|.+++++||+ +++.....|+++|+.--.+.|+++. ......+++.+.++ +.++++| +....+
T Consensus 89 l~~~~~~~~i~Sn~---~~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p-~~~~~vgD~~~d~~ 164 (176)
T PF13419_consen 89 LKAKGIPLVIVSNG---SRERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPP-EEILFVGDSPSDVE 164 (176)
T ss_dssp HHHTTSEEEEEESS---EHHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSG-GGEEEEESSHHHHH
T ss_pred cccccceeEEeecC---CcccccccccccccccccccccccchhhhhhhHHHHHHHHHHHcCCCc-ceEEEEeCCHHHHH
Confidence 67789999999996 4677788899999985556788775 34455555556544 4566666 445566
Q ss_pred HHHHcCCeee
Q 025117 72 ELELAGFQYL 81 (257)
Q Consensus 72 ~l~~~g~~~~ 81 (257)
..+++|+..+
T Consensus 165 ~A~~~G~~~i 174 (176)
T PF13419_consen 165 AAKEAGIKTI 174 (176)
T ss_dssp HHHHTTSEEE
T ss_pred HHHHcCCeEE
Confidence 6777887653
No 124
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=95.39 E-value=0.026 Score=46.32 Aligned_cols=59 Identities=22% Similarity=0.315 Sum_probs=44.1
Q ss_pred CcHHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECC
Q 025117 177 PSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNK 245 (257)
Q Consensus 177 P~p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~ 245 (257)
-+...++.+++.++++++++++|||+ ..|+.+.+.+|+. +.+..+ .+++. ..++++.++
T Consensus 147 ~K~~~i~~l~~~~~i~~~~~i~iGDs-~ND~~ml~~ag~~-vam~na---~~~~k-----~~A~~v~~~ 205 (215)
T TIGR01487 147 DKGVGVEKLKELLGIKPEEVAAIGDS-ENDIDLFRVVGFK-VAVANA---DDQLK-----EIADYVTSN 205 (215)
T ss_pred ChHHHHHHHHHHhCCCHHHEEEECCC-HHHHHHHHhCCCe-EEcCCc---cHHHH-----HhCCEEcCC
Confidence 34458899999999999999999999 6999999999965 444433 23333 246777654
No 125
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=95.09 E-value=0.04 Score=47.11 Aligned_cols=46 Identities=13% Similarity=0.158 Sum_probs=37.9
Q ss_pred CcHHHHHHHHHHhCCCC-CcEEEEcCChhhHHHHHHHcCCeEEEEccCC
Q 025117 177 PSTFMMDYLANKFGIQK-SQICMVGDRLDTDILFGQNGGCKTLLVLSGV 224 (257)
Q Consensus 177 P~p~~~~~~~~~~~~~~-~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~ 224 (257)
.+...++++++.+++++ +++++|||+ ..|+.+++.+|+. +.+..+.
T Consensus 190 ~Kg~al~~l~~~~~i~~~~~v~~~GDs-~NDi~m~~~ag~~-vam~NA~ 236 (273)
T PRK00192 190 DKGKAVRWLKELYRRQDGVETIALGDS-PNDLPMLEAADIA-VVVPGPD 236 (273)
T ss_pred CHHHHHHHHHHHHhccCCceEEEEcCC-hhhHHHHHhCCee-EEeCCCC
Confidence 44567888999999999 999999999 6999999999954 4455444
No 126
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=94.98 E-value=0.12 Score=44.24 Aligned_cols=65 Identities=17% Similarity=0.044 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHc---CCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHHHHHHh
Q 025117 179 TFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNG---GCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKAA 255 (257)
Q Consensus 179 p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~a---G~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~~~l~~ 255 (257)
-...+.+++.+++..+++++|||+ .+|+.+=+.+ |-.+|.|..+. ..+.|.+++..++..+|..
T Consensus 176 g~al~~ll~~~~~~~~~v~~~GD~-~nD~~mf~~~~~~~g~~vavg~a~------------~~A~~~l~~~~~v~~~L~~ 242 (266)
T PRK10187 176 GEAIAAFMQEAPFAGRTPVFVGDD-LTDEAGFAVVNRLGGISVKVGTGA------------TQASWRLAGVPDVWSWLEM 242 (266)
T ss_pred HHHHHHHHHhcCCCCCeEEEEcCC-ccHHHHHHHHHhcCCeEEEECCCC------------CcCeEeCCCHHHHHHHHHH
Confidence 466788889999999999999999 6998875555 45667775432 3578899999999888865
Q ss_pred h
Q 025117 256 A 256 (257)
Q Consensus 256 ~ 256 (257)
+
T Consensus 243 l 243 (266)
T PRK10187 243 I 243 (266)
T ss_pred H
Confidence 4
No 127
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=94.71 E-value=0.058 Score=45.51 Aligned_cols=60 Identities=20% Similarity=0.245 Sum_probs=44.7
Q ss_pred CcHHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECCh
Q 025117 177 PSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKI 246 (257)
Q Consensus 177 P~p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l 246 (257)
-+-..++.+++.++++++++++|||+ ..|+.+.+.+|+. +.+.. ..+.+. ..++++.++-
T Consensus 188 ~K~~~i~~~~~~~~~~~~~~~~~GD~-~nD~~m~~~~~~~-~a~~n---a~~~~k-----~~a~~~~~~n 247 (256)
T TIGR00099 188 SKGSALQSLAEALGISLEDVIAFGDG-MNDIEMLEAAGYG-VAMGN---ADEELK-----ALADYVTDSN 247 (256)
T ss_pred ChHHHHHHHHHHcCCCHHHEEEeCCc-HHhHHHHHhCCce-eEecC---chHHHH-----HhCCEEecCC
Confidence 34577889999999999999999999 6999999999975 33332 233343 2467776653
No 128
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=94.28 E-value=0.26 Score=41.56 Aligned_cols=47 Identities=11% Similarity=0.063 Sum_probs=38.1
Q ss_pred CCcHHHHHHHHHHhCCC--CCcEEEEcCChhhHHHHHHHcCCeEEEEccCC
Q 025117 176 KPSTFMMDYLANKFGIQ--KSQICMVGDRLDTDILFGQNGGCKTLLVLSGV 224 (257)
Q Consensus 176 KP~p~~~~~~~~~~~~~--~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~ 224 (257)
-.+....+.+++.++++ ++++++|||+ ..|+.+-+.+| .++.+..+.
T Consensus 175 ~~Kg~ai~~l~~~~~i~~~~~~~~a~GD~-~ND~~Ml~~ag-~~vam~Na~ 223 (256)
T TIGR01486 175 SDKGKAANALKQFYNQPGGAIKVVGLGDS-PNDLPLLEVVD-LAVVVPGPN 223 (256)
T ss_pred CCHHHHHHHHHHHHhhcCCCceEEEEcCC-HhhHHHHHHCC-EEEEeCCCC
Confidence 34456688999999999 9999999999 69999999999 455565543
No 129
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=93.68 E-value=0.36 Score=36.14 Aligned_cols=78 Identities=23% Similarity=0.382 Sum_probs=46.8
Q ss_pred ChhccCCcEEEEeCCCCcC-----HHHHHHHHHhCCCCCCCCceechH-------HHHHHHHHhc-CCCCCCEEEEEcC-
Q 025117 1 MLRSKGKRLVFVTNNSTKS-----RKQYGKKFETLGLTVTEEEIFASS-------FAAAAYLKSI-DFPKDKKVYVVGE- 66 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~~-----~~~~~~~L~~~G~~~~~~~i~ts~-------~~~~~~l~~~-~~~~~~~v~vlg~- 66 (257)
.|++.|++++++||++... .+.+.+.|+++|+.. +.++.+. ......+++. +.. ...+.++|-
T Consensus 36 ~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~KP~~~~~~~~~~~~~~~~-~~~~v~IGD~ 112 (132)
T TIGR01662 36 ELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPI--DVLYACPHCRKPKPGMFLEALKRFNEID-PEESVYVGDQ 112 (132)
T ss_pred HHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCE--EEEEECCCCCCCChHHHHHHHHHcCCCC-hhheEEEcCC
Confidence 3788999999999977333 455777788899862 2222221 2233334444 242 345667776
Q ss_pred -HHHHHHHHHcCCeee
Q 025117 67 -DGILKELELAGFQYL 81 (257)
Q Consensus 67 -~~~~~~l~~~g~~~~ 81 (257)
.......+.+|+..+
T Consensus 113 ~~~Di~~A~~~Gi~~i 128 (132)
T TIGR01662 113 DLTDLQAAKRAGLAFI 128 (132)
T ss_pred CcccHHHHHHCCCeEE
Confidence 345556677777654
No 130
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=93.57 E-value=0.11 Score=44.03 Aligned_cols=61 Identities=18% Similarity=0.294 Sum_probs=46.5
Q ss_pred CCcHHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECCh
Q 025117 176 KPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKI 246 (257)
Q Consensus 176 KP~p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l 246 (257)
--+...++.+++.+|+++++++.|||+ ..|+.+-+.+|. ++.+..+ .+++. ..++++..+-
T Consensus 195 vsKg~al~~l~~~~gi~~~~v~afGD~-~NDi~Ml~~ag~-~vAm~NA---~~~vK-----~~A~~vt~~n 255 (270)
T PRK10513 195 VNKGTGVKSLAEHLGIKPEEVMAIGDQ-ENDIAMIEYAGV-GVAMGNA---IPSVK-----EVAQFVTKSN 255 (270)
T ss_pred CChHHHHHHHHHHhCCCHHHEEEECCc-hhhHHHHHhCCc-eEEecCc---cHHHH-----HhcCeeccCC
Confidence 334578899999999999999999999 799999999997 5555543 23333 2567777654
No 131
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=93.52 E-value=0.12 Score=50.73 Aligned_cols=111 Identities=14% Similarity=0.077 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHHcCCCc-eEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCC
Q 025117 116 FNYYKVQYGTLCIRENPGC-LFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKS 194 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~-~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~ 194 (257)
..+++..++++.|++ .|+ ..++|+..... ........|+..+ .+..+ ..||+ ++++++ .++
T Consensus 568 ~~r~~a~~~i~~L~~-~gi~~~llTGd~~~~-a~~ia~~lgi~~~-------~~~~p--~~K~~------~v~~l~-~~~ 629 (741)
T PRK11033 568 TLRADARQAISELKA-LGIKGVMLTGDNPRA-AAAIAGELGIDFR-------AGLLP--EDKVK------AVTELN-QHA 629 (741)
T ss_pred CCchhHHHHHHHHHH-CCCEEEEEcCCCHHH-HHHHHHHcCCCee-------cCCCH--HHHHH------HHHHHh-cCC
Confidence 356778889999987 455 55666654432 2212233343211 01100 12332 344454 346
Q ss_pred cEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEE--CChhhHHHHHH
Q 025117 195 QICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYT--NKISDFLSLKA 254 (257)
Q Consensus 195 ~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~--~~l~el~~~l~ 254 (257)
+++||||. ..|..+.++|+ +.|..|..+..... ..|.++ +++.+|.+++.
T Consensus 630 ~v~mvGDg-iNDapAl~~A~---vgia~g~~~~~a~~------~adivl~~~~l~~l~~~i~ 681 (741)
T PRK11033 630 PLAMVGDG-INDAPAMKAAS---IGIAMGSGTDVALE------TADAALTHNRLRGLAQMIE 681 (741)
T ss_pred CEEEEECC-HHhHHHHHhCC---eeEEecCCCHHHHH------hCCEEEecCCHHHHHHHHH
Confidence 89999999 59999999999 55555544433332 245544 78888887654
No 132
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=93.24 E-value=0.38 Score=40.99 Aligned_cols=72 Identities=11% Similarity=0.044 Sum_probs=50.0
Q ss_pred cHHHHHHHHHHhCC---CCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChh--hHHHH
Q 025117 178 STFMMDYLANKFGI---QKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKIS--DFLSL 252 (257)
Q Consensus 178 ~p~~~~~~~~~~~~---~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~--el~~~ 252 (257)
+-...+.+++.+|+ ++++++.|||+ ..|+.+=+.+|. ++.+.......+.+.. ....++|+.+... .+.+.
T Consensus 188 Kg~al~~l~~~lgi~~~~~~~viafGDs-~NDi~Ml~~ag~-gvAM~~~~~~~~~l~~--~~~~~~~~~~~~~~~g~~~~ 263 (271)
T PRK03669 188 KDQAANWLIATYQQLSGTRPTTLGLGDG-PNDAPLLDVMDY-AVVVKGLNREGVHLQD--DDPARVYRTQREGPEGWREG 263 (271)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEcCC-HHHHHHHHhCCE-EEEecCCCCCCccccc--ccCCceEeccCCCcHHHHHH
Confidence 34667899999999 99999999999 799999999994 6666644322222321 1246788777655 34443
Q ss_pred H
Q 025117 253 K 253 (257)
Q Consensus 253 l 253 (257)
+
T Consensus 264 l 264 (271)
T PRK03669 264 L 264 (271)
T ss_pred H
Confidence 3
No 133
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=92.80 E-value=0.73 Score=37.04 Aligned_cols=76 Identities=20% Similarity=0.270 Sum_probs=47.4
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHHH---------HHHHHHhcCCCCCCEEEEEcC-HHHHH
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFA---------AAAYLKSIDFPKDKKVYVVGE-DGILK 71 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~~---------~~~~l~~~~~~~~~~v~vlg~-~~~~~ 71 (257)
|+++|+++.++||++ .+.+...|+++|+.---+.|++|... ....+++.+..+ ..++++|- ....+
T Consensus 104 L~~~g~~~~i~Sn~~---~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p-~~~~~vgD~~~Di~ 179 (198)
T TIGR01428 104 LKERGYRLAILSNGS---PAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALGVPP-DEVLFVASNPWDLG 179 (198)
T ss_pred HHHCCCeEEEEeCCC---HHHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhCCCh-hhEEEEeCCHHHHH
Confidence 678899999999954 45566778889985334667765432 223333444433 44666663 34445
Q ss_pred HHHHcCCeee
Q 025117 72 ELELAGFQYL 81 (257)
Q Consensus 72 ~l~~~g~~~~ 81 (257)
..+.+|+..+
T Consensus 180 ~A~~~G~~~i 189 (198)
T TIGR01428 180 GAKKFGFKTA 189 (198)
T ss_pred HHHHCCCcEE
Confidence 5677787654
No 134
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=92.77 E-value=0.88 Score=37.71 Aligned_cols=105 Identities=12% Similarity=0.055 Sum_probs=70.7
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCc
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQ 195 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~ 195 (257)
..|+++..++++-+. .|+.+.+=|++......-...+.+.|.+...+....+.. .-.|-....|..+.+.+|.++.+
T Consensus 123 ~v~aDv~~a~e~w~~-~g~~vyIYSSgsv~AqKllfg~s~~gdl~~y~~gyfDt~--iG~K~e~~sy~~I~~~Ig~s~~e 199 (254)
T KOG2630|consen 123 HVYADVLPAIERWSG-EGVRVYIYSSGSVAAQKLLFGYSDAGDLRKYISGYFDTT--IGLKVESQSYKKIGHLIGKSPRE 199 (254)
T ss_pred cccchhHHHHHHHhh-cCceEEEEcCCcHHHHHHHHcccCcchHHHHhhhhhhcc--ccceehhHHHHHHHHHhCCChhh
Confidence 467777777777664 566555555555332221111234455555554433322 12477788999999999999999
Q ss_pred EEEEcCChhhHHHHHHHcCCeEEEEccCC
Q 025117 196 ICMVGDRLDTDILFGQNGGCKTLLVLSGV 224 (257)
Q Consensus 196 ~~~IGD~~~~Di~~A~~aG~~ti~V~~G~ 224 (257)
+++.-|. ..-..+|+.+|+.+.++.+..
T Consensus 200 iLfLTd~-~~Ea~aa~~aGl~a~l~~rPg 227 (254)
T KOG2630|consen 200 ILFLTDV-PREAAAARKAGLQAGLVSRPG 227 (254)
T ss_pred eEEeccC-hHHHHHHHhcccceeeeecCC
Confidence 9999999 689999999999998886543
No 135
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=92.66 E-value=0.079 Score=45.26 Aligned_cols=84 Identities=10% Similarity=-0.061 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCcccc--CCCcccccCch-HHHHHHhccCCCccccCCCcHHHHHHHHHHhCCC
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHL--TDAQEWAGGGS-MVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQ 192 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~--~~~~~~~~~g~-~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~ 192 (257)
..++...+.+..+++.+..++++||++..... ...+...|+.. ..+.+.. .+. ++|++.-++.+.+.+++
T Consensus 118 ~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lll---r~~---~~~K~~rr~~I~~~y~I- 190 (266)
T TIGR01533 118 KPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLL---KKD---KSSKESRRQKVQKDYEI- 190 (266)
T ss_pred CcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEe---CCC---CCCcHHHHHHHHhcCCE-
Confidence 34567777888887655568889998753211 01122233321 1122211 111 35666777777777776
Q ss_pred CCcEEEEcCChhhHHHHH
Q 025117 193 KSQICMVGDRLDTDILFG 210 (257)
Q Consensus 193 ~~~~~~IGD~~~~Di~~A 210 (257)
++||||+ ..|+...
T Consensus 191 ---vl~vGD~-~~Df~~~ 204 (266)
T TIGR01533 191 ---VLLFGDN-LLDFDDF 204 (266)
T ss_pred ---EEEECCC-HHHhhhh
Confidence 8999999 5999764
No 136
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=92.54 E-value=0.19 Score=42.87 Aligned_cols=40 Identities=28% Similarity=0.483 Sum_probs=34.5
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCC-CCCceec
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTV-TEEEIFA 41 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~-~~~~i~t 41 (257)
|+++|.+++|+||++...++...+.|+++|++. ..+.|++
T Consensus 130 L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lll 170 (266)
T TIGR01533 130 ANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLL 170 (266)
T ss_pred HHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEe
Confidence 568999999999999888999999999999985 5566763
No 137
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=92.15 E-value=0.17 Score=46.47 Aligned_cols=42 Identities=24% Similarity=0.400 Sum_probs=31.6
Q ss_pred HHHHHHHhCCCCCcEEEEcCChhhHHHHHHHc-CCeEEEEccC
Q 025117 182 MDYLANKFGIQKSQICMVGDRLDTDILFGQNG-GCKTLLVLSG 223 (257)
Q Consensus 182 ~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~a-G~~ti~V~~G 223 (257)
.....+.+|....++++|||++..||..++.. |++|++|-.-
T Consensus 284 ~~~l~~ll~~~g~~VLY~GDhi~~Di~~~k~~~gWrT~~Ii~E 326 (448)
T PF05761_consen 284 WDQLHKLLGWRGKEVLYFGDHIYGDILKSKKRHGWRTAAIIPE 326 (448)
T ss_dssp HHHHHHHCT--GGGEEEEESSTTTTHHHHHHHH-SEEEEE-TT
T ss_pred HHHHHHHHccCCCeEEEECCchhhhhhhhccccceEEEEEehh
Confidence 34555667888889999999999999988776 9999999653
No 138
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=92.12 E-value=0.76 Score=36.10 Aligned_cols=75 Identities=21% Similarity=0.303 Sum_probs=43.4
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechH---------HHHHHHHHhcCCCCCCEEEEEcC-HHHHH
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASS---------FAAAAYLKSIDFPKDKKVYVVGE-DGILK 71 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~---------~~~~~~l~~~~~~~~~~v~vlg~-~~~~~ 71 (257)
|+++|+++.++||++... ...+.++|+.---+.|+++. ......+++.+..+ ..++++|- ....+
T Consensus 97 l~~~g~~~~i~Tn~~~~~----~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~-~~~~~vgD~~~di~ 171 (183)
T TIGR01509 97 LRARGKKLALLTNSPRDH----AVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGLKP-EECLFVDDSPAGIE 171 (183)
T ss_pred HHHCCCeEEEEeCCchHH----HHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCc-ceEEEEcCCHHHHH
Confidence 678899999999966443 23334477754445555531 22333344445433 45666663 33455
Q ss_pred HHHHcCCeee
Q 025117 72 ELELAGFQYL 81 (257)
Q Consensus 72 ~l~~~g~~~~ 81 (257)
..+..|+..+
T Consensus 172 aA~~~G~~~i 181 (183)
T TIGR01509 172 AAKAAGMHTV 181 (183)
T ss_pred HHHHcCCEEE
Confidence 5677787653
No 139
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=91.94 E-value=0.81 Score=36.19 Aligned_cols=76 Identities=22% Similarity=0.288 Sum_probs=45.9
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHH-HHhCCCCCCCCceechHHHHHHHHHhcCCCCCCEEEEEcCHH--HHHHHHHcCC
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKK-FETLGLTVTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDG--ILKELELAGF 78 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~-L~~~G~~~~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~~~--~~~~l~~~g~ 78 (257)
|++.|+++.++||++. ...++. ++.+|+.......=-........+++.+.. ...++++|-.. .....+.+|+
T Consensus 55 Lk~~g~~l~I~Sn~~~---~~~~~~~~~~~gl~~~~~~~KP~p~~~~~~l~~~~~~-~~~~l~IGDs~~~Di~aA~~aGi 130 (170)
T TIGR01668 55 LKAAGRKLLIVSNNAG---EQRAKAVEKALGIPVLPHAVKPPGCAFRRAHPEMGLT-SEQVAVVGDRLFTDVMGGNRNGS 130 (170)
T ss_pred HHHcCCEEEEEeCCch---HHHHHHHHHHcCCEEEcCCCCCChHHHHHHHHHcCCC-HHHEEEECCcchHHHHHHHHcCC
Confidence 6788999999999763 223333 356777532111122333445556665553 35688888653 5666677888
Q ss_pred eee
Q 025117 79 QYL 81 (257)
Q Consensus 79 ~~~ 81 (257)
..+
T Consensus 131 ~~i 133 (170)
T TIGR01668 131 YTI 133 (170)
T ss_pred eEE
Confidence 765
No 140
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=91.78 E-value=1.1 Score=35.22 Aligned_cols=78 Identities=21% Similarity=0.350 Sum_probs=45.6
Q ss_pred ChhccCCcEEEEeCCCCc------------CHHHHHHHHHhCCCCCCCCcee-c------------hHH-HHHHHHHhcC
Q 025117 1 MLRSKGKRLVFVTNNSTK------------SRKQYGKKFETLGLTVTEEEIF-A------------SSF-AAAAYLKSID 54 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~------------~~~~~~~~L~~~G~~~~~~~i~-t------------s~~-~~~~~l~~~~ 54 (257)
.|+++|.+++++||.++. ....+.+.|..+|+. -+.++ + +.. .....+++.+
T Consensus 40 ~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~--fd~ii~~~~~~~~~~~~~KP~~~~~~~~~~~~~ 117 (161)
T TIGR01261 40 KLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII--FDDVLICPHFPDDNCDCRKPKIKLLEPYLKKNL 117 (161)
T ss_pred HHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc--eeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcC
Confidence 378899999999997532 223445557888987 33343 2 112 2223333333
Q ss_pred CCCCCEEEEEc-CHHHHHHHHHcCCeee
Q 025117 55 FPKDKKVYVVG-EDGILKELELAGFQYL 81 (257)
Q Consensus 55 ~~~~~~v~vlg-~~~~~~~l~~~g~~~~ 81 (257)
.. ...++++| +....+..+..|+...
T Consensus 118 ~~-~~e~l~IGD~~~Di~~A~~aGi~~i 144 (161)
T TIGR01261 118 ID-KARSYVIGDRETDMQLAENLGIRGI 144 (161)
T ss_pred CC-HHHeEEEeCCHHHHHHHHHCCCeEE
Confidence 32 24577777 4445666677787664
No 141
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=91.51 E-value=0.7 Score=46.53 Aligned_cols=72 Identities=13% Similarity=0.114 Sum_probs=50.1
Q ss_pred ccCCCcHHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECC--hhhHH
Q 025117 173 VVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNK--ISDFL 250 (257)
Q Consensus 173 ~~gKP~p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~--l~el~ 250 (257)
.+..-.|+-=..+.+.++...+.+.||||. ..|+.+-++|++ +|.+..| + +... ..+|+++.+ +..+.
T Consensus 610 v~ar~~P~~K~~iV~~lq~~g~~va~iGDG-~ND~~alk~AdV-Gia~g~g--~-~~ak-----~aAD~vl~dd~f~~i~ 679 (917)
T TIGR01116 610 LFSRVEPSHKSELVELLQEQGEIVAMTGDG-VNDAPALKKADI-GIAMGSG--T-EVAK-----EASDMVLADDNFATIV 679 (917)
T ss_pred EEEecCHHHHHHHHHHHHhcCCeEEEecCC-cchHHHHHhCCe-eEECCCC--c-HHHH-----HhcCeEEccCCHHHHH
Confidence 445555555566666777666789999999 699999999998 3433333 2 2222 368999976 98888
Q ss_pred HHHH
Q 025117 251 SLKA 254 (257)
Q Consensus 251 ~~l~ 254 (257)
+++.
T Consensus 680 ~~i~ 683 (917)
T TIGR01116 680 AAVE 683 (917)
T ss_pred HHHH
Confidence 7654
No 142
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=91.15 E-value=1.1 Score=39.47 Aligned_cols=102 Identities=15% Similarity=0.114 Sum_probs=57.4
Q ss_pred HHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhc---cCCCc--cccCCCcHH--------HHH---
Q 025117 120 KVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGS---TQREP--LVVGKPSTF--------MMD--- 183 (257)
Q Consensus 120 ~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~---~~~~~--~~~gKP~p~--------~~~--- 183 (257)
++...++.|+..+..++++||.+..+... ++...-...+-+.+..+ ..... .--.+|-.. .++
T Consensus 244 ql~~fl~kL~~~GKklFLiTNSPysFVd~-GM~flvG~~WRdlFDVVIvqA~KP~Fftde~rPfR~~dek~~sl~wdkv~ 322 (510)
T KOG2470|consen 244 QLLAFLRKLKDHGKKLFLITNSPYSFVDK-GMRFLVGDDWRDLFDVVIVQANKPEFFTDERRPFRKYDEKRGSLLWDKVD 322 (510)
T ss_pred HHHHHHHHHHHhcCcEEEEeCCchhhhhc-CceeeeCccHHhhhheeEEecCCCcccccccCcchhhcccccchhhhhhh
Confidence 45566667776556689999999877533 43322112333333221 11100 001222211 111
Q ss_pred --------------HHHHHhCCCCCcEEEEcCChhhHHHHHH-HcCCeEEEEcc
Q 025117 184 --------------YLANKFGIQKSQICMVGDRLDTDILFGQ-NGGCKTLLVLS 222 (257)
Q Consensus 184 --------------~~~~~~~~~~~~~~~IGD~~~~Di~~A~-~aG~~ti~V~~ 222 (257)
..++.-|..-.+++++||.+.+|+..-. +.|++|-.+-.
T Consensus 323 klekgkiYy~G~l~~flelt~WrG~~VlYFGDHlySDLad~tlkhgWRTgAII~ 376 (510)
T KOG2470|consen 323 KLEKGKIYYQGNLKSFLELTGWRGPRVLYFGDHLYSDLADLTLKHGWRTGAIIP 376 (510)
T ss_pred hcccCceeeeccHHHHHHHhccCCCeeEEecCcchhhhhhhHhhcccccccchH
Confidence 2223334556789999999999999876 89999877653
No 143
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=91.10 E-value=1.5 Score=35.50 Aligned_cols=76 Identities=24% Similarity=0.295 Sum_probs=47.5
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechH---------HHHHHHHHhcCCCCCCEEEEEcCH-HHHH
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASS---------FAAAAYLKSIDFPKDKKVYVVGED-GILK 71 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~---------~~~~~~l~~~~~~~~~~v~vlg~~-~~~~ 71 (257)
|+++|+++.++||++ ...+...|..+|+.---+.++++. ......+++.+.. ...++++|-. ...+
T Consensus 87 L~~~g~~~~i~Sn~~---~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~-~~~~l~igD~~~Di~ 162 (205)
T TIGR01454 87 LRADGVGTAIATGKS---GPRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVP-PEDAVMVGDAVTDLA 162 (205)
T ss_pred HHHCCCeEEEEeCCc---hHHHHHHHHHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCC-hhheEEEcCCHHHHH
Confidence 678899999999954 334556678888853334555432 2333444444543 3457777743 4556
Q ss_pred HHHHcCCeee
Q 025117 72 ELELAGFQYL 81 (257)
Q Consensus 72 ~l~~~g~~~~ 81 (257)
..+.+|+..+
T Consensus 163 aA~~~Gi~~i 172 (205)
T TIGR01454 163 SARAAGTATV 172 (205)
T ss_pred HHHHcCCeEE
Confidence 6678888764
No 144
>PRK10976 putative hydrolase; Provisional
Probab=91.02 E-value=0.26 Score=41.71 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccC
Q 025117 179 TFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSG 223 (257)
Q Consensus 179 p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G 223 (257)
...++.+++.+|+++++++.|||+ ..|+.+=+.+|. ++.+..+
T Consensus 192 g~al~~l~~~lgi~~~~viafGD~-~NDi~Ml~~ag~-~vAm~NA 234 (266)
T PRK10976 192 GHALEAVAKKLGYSLKDCIAFGDG-MNDAEMLSMAGK-GCIMGNA 234 (266)
T ss_pred HHHHHHHHHHcCCCHHHeEEEcCC-cccHHHHHHcCC-CeeecCC
Confidence 577889999999999999999999 799999999997 5566554
No 145
>PLN02645 phosphoglycolate phosphatase
Probab=90.64 E-value=0.48 Score=41.38 Aligned_cols=100 Identities=15% Similarity=-0.018 Sum_probs=55.7
Q ss_pred ccEEEEeccCCCCHHHHHHHHHHHHcCCCceEEEecCCCccccC--CCcccccCchHHHHHHhccCCCccccCCCcHHHH
Q 025117 105 VGAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLT--DAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMM 182 (257)
Q Consensus 105 ~~aVv~~~d~~~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~--~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~ 182 (257)
+|.|++..+ ..++...++++.|++++...+++||........ ..+...|+....+. +-.+. ...
T Consensus 35 ~DGtl~~~~--~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~-----------I~ts~-~~~ 100 (311)
T PLN02645 35 CDGVIWKGD--KLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEE-----------IFSSS-FAA 100 (311)
T ss_pred CcCCeEeCC--ccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhh-----------EeehH-HHH
Confidence 455555433 346778899999987555577889976533211 00111221100111 11121 233
Q ss_pred HHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEE
Q 025117 183 DYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLL 219 (257)
Q Consensus 183 ~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~ 219 (257)
...++..+....+.++|+++ ..+...++.+|+..+.
T Consensus 101 ~~~l~~~~~~~~~~V~viG~-~~~~~~l~~~Gi~~~~ 136 (311)
T PLN02645 101 AAYLKSINFPKDKKVYVIGE-EGILEELELAGFQYLG 136 (311)
T ss_pred HHHHHhhccCCCCEEEEEcC-HHHHHHHHHCCCEEec
Confidence 34445555544456777778 6899999999998754
No 146
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=90.61 E-value=0.85 Score=35.40 Aligned_cols=76 Identities=17% Similarity=0.186 Sum_probs=49.3
Q ss_pred ChhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHHHHHHHHHhcCCCCCCEEEEEc-CHHHHHHHHHcCCe
Q 025117 1 MLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDFPKDKKVYVVG-EDGILKELELAGFQ 79 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg-~~~~~~~l~~~g~~ 79 (257)
+|+++|.++.++||.+. ....+.++++|+.--.+..-........++++.+.. .+.++++| +....+.++..|+.
T Consensus 39 ~Lk~~G~~i~IvTn~~~---~~~~~~l~~~gi~~~~~~~~~k~~~~~~~~~~~~~~-~~~~~~vGDs~~D~~~~~~ag~~ 114 (154)
T TIGR01670 39 CALKSGIEVAIITGRKA---KLVEDRCKTLGITHLYQGQSNKLIAFSDILEKLALA-PENVAYIGDDLIDWPVMEKVGLS 114 (154)
T ss_pred HHHHCCCEEEEEECCCC---HHHHHHHHHcCCCEEEecccchHHHHHHHHHHcCCC-HHHEEEECCCHHHHHHHHHCCCe
Confidence 37789999999999554 344566788888621112223445566666665543 35678888 45667778888876
Q ss_pred e
Q 025117 80 Y 80 (257)
Q Consensus 80 ~ 80 (257)
.
T Consensus 115 ~ 115 (154)
T TIGR01670 115 V 115 (154)
T ss_pred E
Confidence 4
No 147
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=90.20 E-value=2 Score=31.23 Aligned_cols=39 Identities=33% Similarity=0.487 Sum_probs=28.9
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechH
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASS 43 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~ 43 (257)
|+++|.+++++||+. ++.+...++.+|+....+.++++.
T Consensus 36 l~~~g~~i~ivS~~~---~~~~~~~~~~~~~~~~~~~i~~~~ 74 (139)
T cd01427 36 LKEKGIKLALATNKS---RREVLELLEELGLDDYFDPVITSN 74 (139)
T ss_pred HHHCCCeEEEEeCch---HHHHHHHHHHcCCchhhhheeccc
Confidence 678899999999955 677777788888864555555433
No 148
>PRK11587 putative phosphatase; Provisional
Probab=90.20 E-value=2.8 Score=34.31 Aligned_cols=75 Identities=16% Similarity=0.119 Sum_probs=43.6
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHHH---------HHHHHHhcCCCCCCEEEEEc-CHHHHH
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFA---------AAAYLKSIDFPKDKKVYVVG-EDGILK 71 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~~---------~~~~l~~~~~~~~~~v~vlg-~~~~~~ 71 (257)
|+++|+++.++||++.. .....++..|+.. .+.|+++... ....+++.+..+ ..++++| +....+
T Consensus 95 L~~~g~~~~ivTn~~~~---~~~~~l~~~~l~~-~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p-~~~l~igDs~~di~ 169 (218)
T PRK11587 95 LNKLGIPWAIVTSGSVP---VASARHKAAGLPA-PEVFVTAERVKRGKPEPDAYLLGAQLLGLAP-QECVVVEDAPAGVL 169 (218)
T ss_pred HHHcCCcEEEEcCCCch---HHHHHHHhcCCCC-ccEEEEHHHhcCCCCCcHHHHHHHHHcCCCc-ccEEEEecchhhhH
Confidence 78899999999997643 3355677788853 3456655332 112223334433 3455666 333455
Q ss_pred HHHHcCCeee
Q 025117 72 ELELAGFQYL 81 (257)
Q Consensus 72 ~l~~~g~~~~ 81 (257)
..+.+|+..+
T Consensus 170 aA~~aG~~~i 179 (218)
T PRK11587 170 SGLAAGCHVI 179 (218)
T ss_pred HHHHCCCEEE
Confidence 5667777654
No 149
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=89.90 E-value=0.46 Score=40.43 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=37.7
Q ss_pred cHHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccC
Q 025117 178 STFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSG 223 (257)
Q Consensus 178 ~p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G 223 (257)
+-..++.+++.+|+++++++.|||+ ..|+.+=+.+|. ++.+..+
T Consensus 189 Kg~al~~l~~~~gi~~~~v~afGD~-~NDi~Ml~~ag~-~vAm~Na 232 (272)
T PRK15126 189 KGAALAVLSQHLGLSLADCMAFGDA-MNDREMLGSVGR-GFIMGNA 232 (272)
T ss_pred hHHHHHHHHHHhCCCHHHeEEecCC-HHHHHHHHHcCC-ceeccCC
Confidence 3467889999999999999999999 799999999995 6666654
No 150
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=89.77 E-value=0.56 Score=38.60 Aligned_cols=60 Identities=23% Similarity=0.347 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhh
Q 025117 179 TFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISD 248 (257)
Q Consensus 179 p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~e 248 (257)
-...+.+++.+|+++++++.|||+ ..|+.+-+.+|. ++.+..+. +++. ..++++.++-.+
T Consensus 188 ~~ai~~l~~~~~i~~~~~~~~GD~-~ND~~Ml~~~~~-~~am~na~---~~~k-----~~a~~i~~~~~~ 247 (254)
T PF08282_consen 188 GSAIKYLLEYLGISPEDIIAFGDS-ENDIEMLELAGY-SVAMGNAT---PELK-----KAADYITPSNND 247 (254)
T ss_dssp HHHHHHHHHHHTTSGGGEEEEESS-GGGHHHHHHSSE-EEEETTS----HHHH-----HHSSEEESSGTC
T ss_pred HHHHHHHhhhcccccceeEEeecc-cccHhHHhhcCe-EEEEcCCC---HHHH-----HhCCEEecCCCC
Confidence 356678889999999999999999 799999999984 45565432 2333 246677766554
No 151
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=89.74 E-value=1.8 Score=35.27 Aligned_cols=76 Identities=21% Similarity=0.170 Sum_probs=46.1
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCC--CCCCceechHH---------HHHHHHHhcCCCCCCEEEEEc-CHHH
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT--VTEEEIFASSF---------AAAAYLKSIDFPKDKKVYVVG-EDGI 69 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~--~~~~~i~ts~~---------~~~~~l~~~~~~~~~~v~vlg-~~~~ 69 (257)
|++.|+++.++||++.. .....|+.+|+. ---+.|+++.. .....+++.+..+..+++++| +...
T Consensus 99 L~~~g~~~~ivT~~~~~---~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~~igD~~~D 175 (220)
T TIGR03351 99 LRSSGIKVALTTGFDRD---TAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQDVQSVAVAGDTPND 175 (220)
T ss_pred HHHCCCEEEEEeCCchH---HHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcCCCChhHeEEeCCCHHH
Confidence 67889999999995544 444556667765 22244554422 233334444442235688888 4555
Q ss_pred HHHHHHcCCee
Q 025117 70 LKELELAGFQY 80 (257)
Q Consensus 70 ~~~l~~~g~~~ 80 (257)
.+..+.+|+..
T Consensus 176 i~aa~~aG~~~ 186 (220)
T TIGR03351 176 LEAGINAGAGA 186 (220)
T ss_pred HHHHHHCCCCe
Confidence 66677888776
No 152
>PRK06769 hypothetical protein; Validated
Probab=89.69 E-value=2.1 Score=33.94 Aligned_cols=80 Identities=8% Similarity=0.051 Sum_probs=45.7
Q ss_pred ChhccCCcEEEEeCCCC-----cCHHHHHHHHHhCCCCC---CCC---ceechHH----HHHHHHHhcCCCCCCEEEEEc
Q 025117 1 MLRSKGKRLVFVTNNST-----KSRKQYGKKFETLGLTV---TEE---EIFASSF----AAAAYLKSIDFPKDKKVYVVG 65 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~-----~~~~~~~~~L~~~G~~~---~~~---~i~ts~~----~~~~~l~~~~~~~~~~v~vlg 65 (257)
+|+++|+++.++||++. .....+.+.|+..|++- ..+ +-....+ .....+++.+.. ...++++|
T Consensus 39 ~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~-p~~~i~IG 117 (173)
T PRK06769 39 KLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDIYLCPHKHGDGCECRKPSTGMLLQAAEKHGLD-LTQCAVIG 117 (173)
T ss_pred HHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEECcCCCCCCCCCCCCCHHHHHHHHHHcCCC-HHHeEEEc
Confidence 37889999999999764 22234666688888851 100 0001112 334444444442 24577887
Q ss_pred C-HHHHHHHHHcCCeee
Q 025117 66 E-DGILKELELAGFQYL 81 (257)
Q Consensus 66 ~-~~~~~~l~~~g~~~~ 81 (257)
- ....+..+.+|+..+
T Consensus 118 D~~~Di~aA~~aGi~~i 134 (173)
T PRK06769 118 DRWTDIVAAAKVNATTI 134 (173)
T ss_pred CCHHHHHHHHHCCCeEE
Confidence 3 344555677787765
No 153
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=89.59 E-value=1.4 Score=34.84 Aligned_cols=75 Identities=16% Similarity=0.130 Sum_probs=45.2
Q ss_pred ChhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHH---------HHHHHHHhcCCCCCCEEEEEc-CHHHH
Q 025117 1 MLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSF---------AAAAYLKSIDFPKDKKVYVVG-EDGIL 70 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~---------~~~~~l~~~~~~~~~~v~vlg-~~~~~ 70 (257)
+|++.|.++.++||+ ......|+.+|+.--.+.++++.. .....+++.+..+ ..+.++| +....
T Consensus 99 ~l~~~g~~i~i~S~~-----~~~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~-~~~v~IgD~~~di 172 (185)
T TIGR02009 99 RLKKKGIAVGLGSSS-----KNADRILAKLGLTDYFDAIVDADEVKEGKPHPETFLLAAELLGVSP-NECVVFEDALAGV 172 (185)
T ss_pred HHHHcCCeEEEEeCc-----hhHHHHHHHcChHHHCCEeeehhhCCCCCCChHHHHHHHHHcCCCH-HHeEEEeCcHhhH
Confidence 367889999999995 345567888888643456665432 1233344444433 3455566 44555
Q ss_pred HHHHHcCCeee
Q 025117 71 KELELAGFQYL 81 (257)
Q Consensus 71 ~~l~~~g~~~~ 81 (257)
+..+.+|+..+
T Consensus 173 ~aA~~~G~~~i 183 (185)
T TIGR02009 173 QAARAAGMFAV 183 (185)
T ss_pred HHHHHCCCeEe
Confidence 66677777543
No 154
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=89.52 E-value=1.3 Score=36.35 Aligned_cols=77 Identities=4% Similarity=-0.004 Sum_probs=48.6
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHH---------HHHHHHHhcCCCCCCEEEEEc-CHHHHH
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSF---------AAAAYLKSIDFPKDKKVYVVG-EDGILK 71 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~---------~~~~~l~~~~~~~~~~v~vlg-~~~~~~ 71 (257)
|+++|+++.++||++. ..+...++++|+.---+.++++.. .....+++.+..+ ..++++| +....+
T Consensus 104 l~~~g~~~~i~S~~~~---~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~-~~~~~igDs~~Di~ 179 (222)
T PRK10826 104 CKAQGLKIGLASASPL---HMLEAVLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGVDP-LTCVALEDSFNGMI 179 (222)
T ss_pred HHHCCCeEEEEeCCcH---HHHHHHHHhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHcCCCH-HHeEEEcCChhhHH
Confidence 6789999999999653 445556667787644455555422 3444455555532 4567777 345566
Q ss_pred HHHHcCCeeeC
Q 025117 72 ELELAGFQYLG 82 (257)
Q Consensus 72 ~l~~~g~~~~~ 82 (257)
..+.+|+..+.
T Consensus 180 aA~~aG~~~i~ 190 (222)
T PRK10826 180 AAKAARMRSIV 190 (222)
T ss_pred HHHHcCCEEEE
Confidence 77888887654
No 155
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=89.47 E-value=1.5 Score=36.80 Aligned_cols=75 Identities=17% Similarity=0.267 Sum_probs=44.7
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHh-CCCCCC-C-CceechHH----HHHHHHHhcCCCCCCEEEEEc-CHHHHHHH
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFET-LGLTVT-E-EEIFASSF----AAAAYLKSIDFPKDKKVYVVG-EDGILKEL 73 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~-~G~~~~-~-~~i~ts~~----~~~~~l~~~~~~~~~~v~vlg-~~~~~~~l 73 (257)
|+++|.+++|+||.+...++..++.|.+ +|++.. . +.+++... .-..++++.+ .+.++| +....+..
T Consensus 126 L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~~~K~~K~~~l~~~~-----i~I~IGDs~~Di~aA 200 (237)
T PRK11009 126 HVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIFAGDKPGQYTKTQWLKKKN-----IRIFYGDSDNDITAA 200 (237)
T ss_pred HHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEEcCCCCCCCCHHHHHHhcC-----CeEEEcCCHHHHHHH
Confidence 6789999999999765566777788775 999532 2 33443221 1123444332 244455 33455566
Q ss_pred HHcCCeee
Q 025117 74 ELAGFQYL 81 (257)
Q Consensus 74 ~~~g~~~~ 81 (257)
+++|++..
T Consensus 201 ~~AGi~~I 208 (237)
T PRK11009 201 REAGARGI 208 (237)
T ss_pred HHcCCcEE
Confidence 77776543
No 156
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=89.40 E-value=0.35 Score=39.86 Aligned_cols=100 Identities=16% Similarity=0.122 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhc-----cCC--CccccCCCcHHHHHHHHHHh
Q 025117 117 NYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGS-----TQR--EPLVVGKPSTFMMDYLANKF 189 (257)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~-----~~~--~~~~~gKP~p~~~~~~~~~~ 189 (257)
-++...+.+..++..+...+|+|.....+. .......|+...+...... +|. .+...++-+-......++++
T Consensus 78 l~~ga~elv~~lk~~G~~v~iiSgg~~~lv-~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~~~ 156 (212)
T COG0560 78 LTPGAEELVAALKAAGAKVVIISGGFTFLV-EPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAAEL 156 (212)
T ss_pred CCccHHHHHHHHHHCCCEEEEEcCChHHHH-HHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHHHc
Confidence 345566777778774444566665544331 2222333433222111111 111 11223344567788889999
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHcCCeEE
Q 025117 190 GIQKSQICMVGDRLDTDILFGQNGGCKTL 218 (257)
Q Consensus 190 ~~~~~~~~~IGD~~~~Di~~A~~aG~~ti 218 (257)
|+++++++++||+ ..|+-+=..+|...+
T Consensus 157 g~~~~~~~a~gDs-~nDlpml~~ag~~ia 184 (212)
T COG0560 157 GIPLEETVAYGDS-ANDLPMLEAAGLPIA 184 (212)
T ss_pred CCCHHHeEEEcCc-hhhHHHHHhCCCCeE
Confidence 9999999999999 699999999997654
No 157
>PLN02887 hydrolase family protein
Probab=89.40 E-value=0.61 Score=44.34 Aligned_cols=59 Identities=19% Similarity=0.217 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECCh
Q 025117 178 STFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKI 246 (257)
Q Consensus 178 ~p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l 246 (257)
+...++.+++.+|+++++++.|||+ ..|+.+=+.+|. ++.+..+. +.+. ..++++..+-
T Consensus 508 KG~ALk~L~e~lGI~~eeviAFGDs-~NDIeMLe~AG~-gVAMgNA~---eeVK-----~~Ad~VT~sN 566 (580)
T PLN02887 508 KGNGVKMLLNHLGVSPDEIMAIGDG-ENDIEMLQLASL-GVALSNGA---EKTK-----AVADVIGVSN 566 (580)
T ss_pred HHHHHHHHHHHcCCCHHHEEEEecc-hhhHHHHHHCCC-EEEeCCCC---HHHH-----HhCCEEeCCC
Confidence 4567889999999999999999999 799999999996 56666543 2333 2567777553
No 158
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=89.33 E-value=1.3 Score=37.14 Aligned_cols=75 Identities=16% Similarity=0.269 Sum_probs=43.8
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHH-hCCCCCCCCceechHHH------HHHHHHhcCCCCCCEEEEEc-CHHHHHHH
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFE-TLGLTVTEEEIFASSFA------AAAYLKSIDFPKDKKVYVVG-EDGILKEL 73 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~-~~G~~~~~~~i~ts~~~------~~~~l~~~~~~~~~~v~vlg-~~~~~~~l 73 (257)
|+++|.++.|+||.+...++..++.|. .+|++--.+.|+++... -..++++.+ .++++| +.......
T Consensus 126 l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~~~~l~~~~-----i~i~vGDs~~DI~aA 200 (237)
T TIGR01672 126 HQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYTKTQWIQDKN-----IRIHYGDSDNDITAA 200 (237)
T ss_pred HHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCCHHHHHHhCC-----CeEEEeCCHHHHHHH
Confidence 678999999999975543556666655 69997433344442210 123454432 245566 33445566
Q ss_pred HHcCCeee
Q 025117 74 ELAGFQYL 81 (257)
Q Consensus 74 ~~~g~~~~ 81 (257)
+++|++..
T Consensus 201 k~AGi~~I 208 (237)
T TIGR01672 201 KEAGARGI 208 (237)
T ss_pred HHCCCCEE
Confidence 67776643
No 159
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=89.18 E-value=0.56 Score=38.97 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=30.1
Q ss_pred CCCcHHHHHHHHHHhCC--CCCcEEEEcCChhhHHHHHHHcCCe
Q 025117 175 GKPSTFMMDYLANKFGI--QKSQICMVGDRLDTDILFGQNGGCK 216 (257)
Q Consensus 175 gKP~p~~~~~~~~~~~~--~~~~~~~IGD~~~~Di~~A~~aG~~ 216 (257)
.|+.. .+..++.+++ +++++++|||+ ..|+.+-+.+|+.
T Consensus 181 sK~~a--l~~l~~~~~~~~~~~~~i~~GD~-~nD~~ml~~ag~~ 221 (225)
T TIGR02461 181 DKGKA--IKRLLDLYKLRPGAIESVGLGDS-ENDFPMFEVVDLA 221 (225)
T ss_pred CHHHH--HHHHHHHhccccCcccEEEEcCC-HHHHHHHHhCCCc
Confidence 56544 4555566654 77799999999 6999999999974
No 160
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=89.16 E-value=2.3 Score=34.59 Aligned_cols=76 Identities=17% Similarity=0.159 Sum_probs=48.8
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechH---------HHHHHHHHhcCCCCCCEEEEEc-CHHHHH
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASS---------FAAAAYLKSIDFPKDKKVYVVG-EDGILK 71 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~---------~~~~~~l~~~~~~~~~~v~vlg-~~~~~~ 71 (257)
|+++|.++.++||+. ...+...|+.+|+.---+.|+++. ......+++.+.. ..+++++| +....+
T Consensus 94 L~~~g~~~~i~S~~~---~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~-~~~~~~iGDs~~Di~ 169 (214)
T PRK13288 94 LKKQGYKLGIVTTKM---RDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAK-PEEALMVGDNHHDIL 169 (214)
T ss_pred HHHCCCeEEEEeCCC---HHHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCC-HHHEEEECCCHHHHH
Confidence 678899999999955 556667788889874344555431 2233334444443 34567777 445566
Q ss_pred HHHHcCCeee
Q 025117 72 ELELAGFQYL 81 (257)
Q Consensus 72 ~l~~~g~~~~ 81 (257)
..+.+|+..+
T Consensus 170 aa~~aG~~~i 179 (214)
T PRK13288 170 AGKNAGTKTA 179 (214)
T ss_pred HHHHCCCeEE
Confidence 6778888765
No 161
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=89.03 E-value=1.9 Score=36.15 Aligned_cols=76 Identities=20% Similarity=0.219 Sum_probs=48.1
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHH---------HHHHHHHhcCCCCCCEEEEEcC-HHHHH
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSF---------AAAAYLKSIDFPKDKKVYVVGE-DGILK 71 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~---------~~~~~l~~~~~~~~~~v~vlg~-~~~~~ 71 (257)
|+++|+++.++||++ +......|+++|+.---+.|+++.. .....+++.+..+ ..++++|- ....+
T Consensus 120 L~~~g~~l~I~Tn~~---~~~~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~-~~~l~vgDs~~Di~ 195 (248)
T PLN02770 120 IEDRGLKRAAVTNAP---RENAELMISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLKVSK-DHTFVFEDSVSGIK 195 (248)
T ss_pred HHHcCCeEEEEeCCC---HHHHHHHHHHcCChhhCcEEEecCcCCCCCCChHHHHHHHHHhCCCh-hHEEEEcCCHHHHH
Confidence 778999999999954 5566667888888644455665543 2223333444432 45667774 45566
Q ss_pred HHHHcCCeee
Q 025117 72 ELELAGFQYL 81 (257)
Q Consensus 72 ~l~~~g~~~~ 81 (257)
..+.+|+..+
T Consensus 196 aA~~aGi~~i 205 (248)
T PLN02770 196 AGVAAGMPVV 205 (248)
T ss_pred HHHHCCCEEE
Confidence 6677887765
No 162
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=88.65 E-value=1.8 Score=34.31 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=50.0
Q ss_pred ChhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHHHHHHHHHhcCCCCCCEEEEEc-CHHHHHHHHHcCCe
Q 025117 1 MLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDFPKDKKVYVVG-EDGILKELELAGFQ 79 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg-~~~~~~~l~~~g~~ 79 (257)
.|++.|+++.++||++ .......|..+|+.---+.+-.........+++.+.. ...++++| +....+.++..|+.
T Consensus 45 ~L~~~Gi~laIiT~k~---~~~~~~~l~~lgi~~~f~~~kpkp~~~~~~~~~l~~~-~~ev~~iGD~~nDi~~~~~ag~~ 120 (169)
T TIGR02726 45 VLQLCGIDVAIITSKK---SGAVRHRAEELKIKRFHEGIKKKTEPYAQMLEEMNIS-DAEVCYVGDDLVDLSMMKRVGLA 120 (169)
T ss_pred HHHHCCCEEEEEECCC---cHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHHcCcC-HHHEEEECCCHHHHHHHHHCCCe
Confidence 3788999999999954 4455566777888621122222334566666666542 34688888 44566777888887
Q ss_pred ee
Q 025117 80 YL 81 (257)
Q Consensus 80 ~~ 81 (257)
..
T Consensus 121 ~a 122 (169)
T TIGR02726 121 VA 122 (169)
T ss_pred EE
Confidence 75
No 163
>PLN02580 trehalose-phosphatase
Probab=88.46 E-value=2.1 Score=38.54 Aligned_cols=67 Identities=15% Similarity=0.106 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhCCCCCc---EEEEcCChhhHHHHHHHc----CCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHHH
Q 025117 179 TFMMDYLANKFGIQKSQ---ICMVGDRLDTDILFGQNG----GCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLS 251 (257)
Q Consensus 179 p~~~~~~~~~~~~~~~~---~~~IGD~~~~Di~~A~~a----G~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~~ 251 (257)
-...+.+++.++++..+ .++|||+ .+|..+=+.+ +--+|.|..|.. ...+.|.+++..|+.+
T Consensus 303 G~Av~~Ll~~~g~~~~d~~~pi~iGDD-~TDedmF~~L~~~~~G~~I~Vgn~~~----------~t~A~y~L~dp~eV~~ 371 (384)
T PLN02580 303 GKAVEFLLESLGLSNCDDVLPIYIGDD-RTDEDAFKVLREGNRGYGILVSSVPK----------ESNAFYSLRDPSEVME 371 (384)
T ss_pred HHHHHHHHHhcCCCcccceeEEEECCC-chHHHHHHhhhccCCceEEEEecCCC----------CccceEEcCCHHHHHH
Confidence 46678888999887653 3899999 6999876642 124566654421 1467899999999998
Q ss_pred HHHhh
Q 025117 252 LKAAA 256 (257)
Q Consensus 252 ~l~~~ 256 (257)
+|..+
T Consensus 372 ~L~~L 376 (384)
T PLN02580 372 FLKSL 376 (384)
T ss_pred HHHHH
Confidence 88754
No 164
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=88.22 E-value=2.8 Score=34.12 Aligned_cols=77 Identities=23% Similarity=0.261 Sum_probs=49.9
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHH---------HHHHHHHhcCCCCCCEEEEEcCH--HHH
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSF---------AAAAYLKSIDFPKDKKVYVVGED--GIL 70 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~---------~~~~~l~~~~~~~~~~v~vlg~~--~~~ 70 (257)
|+++|+++.++||+.. .....+|+++|+.---+.|+++.. .....+++.+.. ...++++|-. ...
T Consensus 106 L~~~g~~~~i~Tn~~~---~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~-~~~~~~igDs~~~di 181 (221)
T TIGR02253 106 LRESGYRLGIITDGLP---VKQWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYAALKRLGVK-PEEAVMVGDRLDKDI 181 (221)
T ss_pred HHHCCCEEEEEeCCch---HHHHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHHHHHHcCCC-hhhEEEECCChHHHH
Confidence 7788999999999653 344566888888643455665422 233444555553 3567888854 356
Q ss_pred HHHHHcCCeeeC
Q 025117 71 KELELAGFQYLG 82 (257)
Q Consensus 71 ~~l~~~g~~~~~ 82 (257)
...+.+|+..+.
T Consensus 182 ~~A~~aG~~~i~ 193 (221)
T TIGR02253 182 KGAKNLGMKTVW 193 (221)
T ss_pred HHHHHCCCEEEE
Confidence 677888987653
No 165
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=87.72 E-value=0.33 Score=37.78 Aligned_cols=80 Identities=20% Similarity=0.207 Sum_probs=53.0
Q ss_pred HHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccC-CCcHHHHHHHHHHhCCCCCcEEEEcCC
Q 025117 124 GTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVG-KPSTFMMDYLANKFGIQKSQICMVGDR 202 (257)
Q Consensus 124 ~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~g-KP~p~~~~~~~~~~~~~~~~~~~IGD~ 202 (257)
.+..+.+.+....|.|..+...... ...-+| .+..+.| +-....|+.+++++++.++++.+|||+
T Consensus 43 Gik~l~~~Gi~vAIITGr~s~ive~-Ra~~LG-------------I~~~~qG~~dK~~a~~~L~~~~~l~~e~~ayiGDD 108 (170)
T COG1778 43 GIKLLLKSGIKVAIITGRDSPIVEK-RAKDLG-------------IKHLYQGISDKLAAFEELLKKLNLDPEEVAYVGDD 108 (170)
T ss_pred HHHHHHHcCCeEEEEeCCCCHHHHH-HHHHcC-------------CceeeechHhHHHHHHHHHHHhCCCHHHhhhhcCc
Confidence 3445555344477888877643211 112222 2222233 234578999999999999999999999
Q ss_pred hhhHHHHHHHcCCeEE
Q 025117 203 LDTDILFGQNGGCKTL 218 (257)
Q Consensus 203 ~~~Di~~A~~aG~~ti 218 (257)
+ .|+..=.+.|+..+
T Consensus 109 ~-~Dlpvm~~vGls~a 123 (170)
T COG1778 109 L-VDLPVMEKVGLSVA 123 (170)
T ss_pred c-ccHHHHHHcCCccc
Confidence 5 99999999997643
No 166
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=87.45 E-value=2.8 Score=35.64 Aligned_cols=76 Identities=9% Similarity=0.156 Sum_probs=46.9
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHH---------HHHHHHHhcCCCCCCEEEEEc-CHHHHH
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSF---------AAAAYLKSIDFPKDKKVYVVG-EDGILK 71 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~---------~~~~~l~~~~~~~~~~v~vlg-~~~~~~ 71 (257)
|+++|+++.++||++. ..+...|+.+|+.---+.|+++.. .....+++.+..+ ..++++| +....+
T Consensus 121 L~~~g~~l~I~Tn~~~---~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p-~~~l~IgDs~~Di~ 196 (260)
T PLN03243 121 LKKHEIPIAVASTRPR---RYLERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGFIP-ERCIVFGNSNSSVE 196 (260)
T ss_pred HHHCCCEEEEEeCcCH---HHHHHHHHHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhCCCh-HHeEEEcCCHHHHH
Confidence 7789999999999553 455566777887543445555432 1233344445433 4466676 455566
Q ss_pred HHHHcCCeee
Q 025117 72 ELELAGFQYL 81 (257)
Q Consensus 72 ~l~~~g~~~~ 81 (257)
..+.+|+..+
T Consensus 197 aA~~aG~~~i 206 (260)
T PLN03243 197 AAHDGCMKCV 206 (260)
T ss_pred HHHHcCCEEE
Confidence 6777887654
No 167
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=87.31 E-value=2 Score=34.59 Aligned_cols=74 Identities=19% Similarity=0.227 Sum_probs=44.6
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHH---------HHHHHHHhcCCCCCCEEEEEcCH--HHH
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSF---------AAAAYLKSIDFPKDKKVYVVGED--GIL 70 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~---------~~~~~l~~~~~~~~~~v~vlg~~--~~~ 70 (257)
|+++|+++.++||++. .+...|+++|+.---+.|++|.. .....+++.+.. ..+++++|-. ...
T Consensus 117 L~~~g~~~~i~Sn~~~----~~~~~l~~~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~-~~~~~~IgD~~~~Di 191 (203)
T TIGR02252 117 LRERGLILGVISNFDS----RLRGLLEALGLLEYFDFVVTSYEVGAEKPDPKIFQEALERAGIS-PEEALHIGDSLRNDY 191 (203)
T ss_pred HHHCCCEEEEEeCCch----hHHHHHHHCCcHHhcceEEeecccCCCCCCHHHHHHHHHHcCCC-hhHEEEECCCchHHH
Confidence 6788999999999542 24567888898644456665432 122233344442 3457777753 245
Q ss_pred HHHHHcCCee
Q 025117 71 KELELAGFQY 80 (257)
Q Consensus 71 ~~l~~~g~~~ 80 (257)
+..+.+|+..
T Consensus 192 ~~A~~aG~~~ 201 (203)
T TIGR02252 192 QGARAAGWRA 201 (203)
T ss_pred HHHHHcCCee
Confidence 5566777654
No 168
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=87.28 E-value=3.3 Score=34.70 Aligned_cols=77 Identities=16% Similarity=0.047 Sum_probs=43.8
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCC-CCceechHH---------HHHHHHHhcCCCCCCEEEEEc-CHHHH
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVT-EEEIFASSF---------AAAAYLKSIDFPKDKKVYVVG-EDGIL 70 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~-~~~i~ts~~---------~~~~~l~~~~~~~~~~v~vlg-~~~~~ 70 (257)
|+++|+++.++||++ .+.....|+++|+.-- .+.|+++.. .....+++.+......++++| +....
T Consensus 111 L~~~g~~l~IvT~~~---~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~~~l~IGDs~~Di 187 (253)
T TIGR01422 111 LRARGIKIGSTTGYT---REMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGVYDVAACVKVGDTVPDI 187 (253)
T ss_pred HHHCCCeEEEECCCc---HHHHHHHHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCCCCchheEEECCcHHHH
Confidence 678899999999955 3444455566665422 244555432 233334444442124577777 33455
Q ss_pred HHHHHcCCeee
Q 025117 71 KELELAGFQYL 81 (257)
Q Consensus 71 ~~l~~~g~~~~ 81 (257)
+..+.+|+..+
T Consensus 188 ~aA~~aGi~~i 198 (253)
T TIGR01422 188 EEGRNAGMWTV 198 (253)
T ss_pred HHHHHCCCeEE
Confidence 56677787654
No 169
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=87.18 E-value=11 Score=33.75 Aligned_cols=78 Identities=23% Similarity=0.353 Sum_probs=45.3
Q ss_pred ChhccCCcEEEEeCCCCc------------CHHHHHHHHHhCCCCCCCCcee-c------------h-HHHHHHHHHhcC
Q 025117 1 MLRSKGKRLVFVTNNSTK------------SRKQYGKKFETLGLTVTEEEIF-A------------S-SFAAAAYLKSID 54 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~------------~~~~~~~~L~~~G~~~~~~~i~-t------------s-~~~~~~~l~~~~ 54 (257)
.|+++|+++.++||+++. ......+.|+.+|+.. +.|+ + + ......++++.+
T Consensus 41 ~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl~f--d~i~i~~~~~sd~~~~rKP~p~~l~~a~~~l~ 118 (354)
T PRK05446 41 KLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGIKF--DEVLICPHFPEDNCSCRKPKTGLVEEYLAEGA 118 (354)
T ss_pred HHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCCce--eeEEEeCCcCcccCCCCCCCHHHHHHHHHHcC
Confidence 378899999999996421 2334455678888863 3332 1 1 123334444444
Q ss_pred CCCCCEEEEEcC-HHHHHHHHHcCCeee
Q 025117 55 FPKDKKVYVVGE-DGILKELELAGFQYL 81 (257)
Q Consensus 55 ~~~~~~v~vlg~-~~~~~~l~~~g~~~~ 81 (257)
.. ..+++++|- ....+..+.+|++.+
T Consensus 119 v~-~~~svmIGDs~sDi~aAk~aGi~~I 145 (354)
T PRK05446 119 ID-LANSYVIGDRETDVQLAENMGIKGI 145 (354)
T ss_pred CC-cccEEEEcCCHHHHHHHHHCCCeEE
Confidence 42 356777774 344555667776654
No 170
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=87.17 E-value=5.6 Score=31.39 Aligned_cols=77 Identities=18% Similarity=0.167 Sum_probs=44.2
Q ss_pred ChhccCCcEEEEeCCCCc-----CH-------HHHHHHHHhCCCCCCCCceec--------------------hHHHHHH
Q 025117 1 MLRSKGKRLVFVTNNSTK-----SR-------KQYGKKFETLGLTVTEEEIFA--------------------SSFAAAA 48 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~-----~~-------~~~~~~L~~~G~~~~~~~i~t--------------------s~~~~~~ 48 (257)
.|+++|+++.++||++.. +. +.+...|.++|+.+ +.++. .......
T Consensus 37 ~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~KP~p~~~~~ 114 (176)
T TIGR00213 37 ELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVDL--DGIYYCPHHPEGVEEFRQVCDCRKPKPGMLLQ 114 (176)
T ss_pred HHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCCc--cEEEECCCCCcccccccCCCCCCCCCHHHHHH
Confidence 378899999999998752 21 23334466666652 22221 1223334
Q ss_pred HHHhcCCCCCCEEEEEc-CHHHHHHHHHcCCee
Q 025117 49 YLKSIDFPKDKKVYVVG-EDGILKELELAGFQY 80 (257)
Q Consensus 49 ~l~~~~~~~~~~v~vlg-~~~~~~~l~~~g~~~ 80 (257)
.+++.+..+ ..++++| +....+..+.+|+..
T Consensus 115 a~~~~~~~~-~~~v~VGDs~~Di~aA~~aG~~~ 146 (176)
T TIGR00213 115 ARKELHIDM-AQSYMVGDKLEDMQAGVAAKVKT 146 (176)
T ss_pred HHHHcCcCh-hhEEEEcCCHHHHHHHHHCCCcE
Confidence 445555433 4566777 445566677888865
No 171
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=87.16 E-value=4 Score=32.98 Aligned_cols=76 Identities=22% Similarity=0.225 Sum_probs=47.7
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechH---------HHHHHHHHhcCCCCCCEEEEEc-CHHHHH
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASS---------FAAAAYLKSIDFPKDKKVYVVG-EDGILK 71 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~---------~~~~~~l~~~~~~~~~~v~vlg-~~~~~~ 71 (257)
|+++|.++.++||++ .......|+++|+.--.+.++++. ......+++.+..+ ..++++| +....+
T Consensus 97 l~~~g~~~~i~S~~~---~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~-~~~~~igDs~~d~~ 172 (213)
T TIGR01449 97 LRAKGLRLGLVTNKP---TPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAP-QQMVYVGDSRVDIQ 172 (213)
T ss_pred HHHCCCeEEEEeCCC---HHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCCh-hHeEEeCCCHHHHH
Confidence 678899999999954 345566677788753334454432 23344455555433 4466777 445566
Q ss_pred HHHHcCCeee
Q 025117 72 ELELAGFQYL 81 (257)
Q Consensus 72 ~l~~~g~~~~ 81 (257)
..+.+|+...
T Consensus 173 aa~~aG~~~i 182 (213)
T TIGR01449 173 AARAAGCPSV 182 (213)
T ss_pred HHHHCCCeEE
Confidence 7788898765
No 172
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=87.11 E-value=6.3 Score=31.19 Aligned_cols=78 Identities=18% Similarity=0.157 Sum_probs=44.6
Q ss_pred ChhccCCcEEEEeCCCCc-----CH-------HHHHHHHHhCCCCCCCCceech--------------HHHHHHHHHhcC
Q 025117 1 MLRSKGKRLVFVTNNSTK-----SR-------KQYGKKFETLGLTVTEEEIFAS--------------SFAAAAYLKSID 54 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~-----~~-------~~~~~~L~~~G~~~~~~~i~ts--------------~~~~~~~l~~~~ 54 (257)
.|+++|+++.++||++.. .. +.+...|+++|+. -+.++++ .......+++.+
T Consensus 40 ~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~--f~~i~~~~~~~~~~~~~~KP~p~~~~~~~~~l~ 117 (181)
T PRK08942 40 RLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGGR--LDGIYYCPHHPEDGCDCRKPKPGMLLSIAERLN 117 (181)
T ss_pred HHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCc--cceEEECCCCCCCCCcCCCCCHHHHHHHHHHcC
Confidence 378899999999997641 11 2334456677864 2233321 122333344445
Q ss_pred CCCCCEEEEEc-CHHHHHHHHHcCCeee
Q 025117 55 FPKDKKVYVVG-EDGILKELELAGFQYL 81 (257)
Q Consensus 55 ~~~~~~v~vlg-~~~~~~~l~~~g~~~~ 81 (257)
.. ...++++| +.......+.+|+...
T Consensus 118 ~~-~~~~~~VgDs~~Di~~A~~aG~~~i 144 (181)
T PRK08942 118 ID-LAGSPMVGDSLRDLQAAAAAGVTPV 144 (181)
T ss_pred CC-hhhEEEEeCCHHHHHHHHHCCCeEE
Confidence 43 34677787 3445566677887654
No 173
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=86.83 E-value=2.4 Score=42.37 Aligned_cols=64 Identities=13% Similarity=0.146 Sum_probs=45.6
Q ss_pred HHHHHHHH---HhCCCCCcEEEEcCChhhHHHHHHHcC-------------CeEEEEccCCCChhhhcCCCCCCCCcEEE
Q 025117 180 FMMDYLAN---KFGIQKSQICMVGDRLDTDILFGQNGG-------------CKTLLVLSGVTSLSMLQSPNNSIQPDFYT 243 (257)
Q Consensus 180 ~~~~~~~~---~~~~~~~~~~~IGD~~~~Di~~A~~aG-------------~~ti~V~~G~~~~~~~~~~~~~~~pd~~~ 243 (257)
...+.+++ .+|.+++.+++|||+ .+|..+=+.++ .-+|.|..+ ...+.|++
T Consensus 765 ~Al~~Ll~~~~~~g~~~d~vl~~GDD-~nDedMF~~~~~~~~g~~~~~~~~~~~v~VG~~------------~S~A~y~L 831 (854)
T PLN02205 765 LVAKRLLSIMQERGMLPDFVLCIGDD-RSDEDMFEVITSSMAGPSIAPRAEVFACTVGQK------------PSKAKYYL 831 (854)
T ss_pred HHHHHHHHHHHhcCCCcccEEEEcCC-ccHHHHHHHhhhhccCCcccccccceeEEECCC------------CccCeEec
Confidence 44555543 468899999999999 69998766654 234444322 13678999
Q ss_pred CChhhHHHHHHhh
Q 025117 244 NKISDFLSLKAAA 256 (257)
Q Consensus 244 ~~l~el~~~l~~~ 256 (257)
++..|+.++|+.+
T Consensus 832 ~d~~eV~~lL~~L 844 (854)
T PLN02205 832 DDTAEIVRLMQGL 844 (854)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999998764
No 174
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=86.79 E-value=4 Score=35.10 Aligned_cols=32 Identities=6% Similarity=0.140 Sum_probs=28.2
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCC
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 33 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~ 33 (257)
|++.|++++++||.+....+.+.+.|...|+.
T Consensus 199 l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~ 230 (300)
T PHA02530 199 YKAAGYEIIVVSGRDGVCEEDTVEWLRQTDIW 230 (300)
T ss_pred HHhCCCEEEEEeCCChhhHHHHHHHHHHcCCc
Confidence 67889999999999999999999999888743
No 175
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=86.36 E-value=3.1 Score=32.83 Aligned_cols=74 Identities=26% Similarity=0.351 Sum_probs=48.1
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCC-CCCceechHHHHHHHHHhcCCCCCCEEEEEcCHHHHHHHHH--cCC
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTV-TEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDGILKELEL--AGF 78 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~-~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~~~~~~~l~~--~g~ 78 (257)
|+++|.+++++|||+ ++.++...+++|++. .. --=-++.+....|++.+++ .+.|.++|-.-+-+.|-. .|+
T Consensus 58 ~k~~gi~v~vvSNn~---e~RV~~~~~~l~v~fi~~-A~KP~~~~fr~Al~~m~l~-~~~vvmVGDqL~TDVlggnr~G~ 132 (175)
T COG2179 58 LKEAGIKVVVVSNNK---ESRVARAAEKLGVPFIYR-AKKPFGRAFRRALKEMNLP-PEEVVMVGDQLFTDVLGGNRAGM 132 (175)
T ss_pred HHhcCCEEEEEeCCC---HHHHHhhhhhcCCceeec-ccCccHHHHHHHHHHcCCC-hhHEEEEcchhhhhhhcccccCc
Confidence 678999999999966 344555566788872 11 0012345677788877664 356888888777777643 355
Q ss_pred ee
Q 025117 79 QY 80 (257)
Q Consensus 79 ~~ 80 (257)
..
T Consensus 133 ~t 134 (175)
T COG2179 133 RT 134 (175)
T ss_pred EE
Confidence 44
No 176
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=86.30 E-value=6 Score=32.51 Aligned_cols=76 Identities=21% Similarity=0.274 Sum_probs=46.6
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceec---------hHHHHHHHHHhcCCCCCCEEEEEc-CHHHHH
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFA---------SSFAAAAYLKSIDFPKDKKVYVVG-EDGILK 71 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~t---------s~~~~~~~l~~~~~~~~~~v~vlg-~~~~~~ 71 (257)
|+++|.++.++||++ ......-|+.+|+.---+.|++ ........+.+.+.. ..+++++| +....+
T Consensus 101 L~~~g~~l~i~T~k~---~~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~-~~~~l~VGDs~~Di~ 176 (220)
T COG0546 101 LKSAGYKLGIVTNKP---ERELDILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLD-PEEALMVGDSLNDIL 176 (220)
T ss_pred HHhCCCeEEEEeCCc---HHHHHHHHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCCC-hhheEEECCCHHHHH
Confidence 788999999999954 4555555666887654444444 112233333444443 24678888 445666
Q ss_pred HHHHcCCeee
Q 025117 72 ELELAGFQYL 81 (257)
Q Consensus 72 ~l~~~g~~~~ 81 (257)
..+.+|+..+
T Consensus 177 aA~~Ag~~~v 186 (220)
T COG0546 177 AAKAAGVPAV 186 (220)
T ss_pred HHHHcCCCEE
Confidence 6778886544
No 177
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=86.09 E-value=2.1 Score=35.45 Aligned_cols=76 Identities=20% Similarity=0.343 Sum_probs=47.0
Q ss_pred ChhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHHH---------HHHHHHhcCCCCCCEEEEEcC-HHHH
Q 025117 1 MLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFA---------AAAYLKSIDFPKDKKVYVVGE-DGIL 70 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~~---------~~~~l~~~~~~~~~~v~vlg~-~~~~ 70 (257)
.|+++|+++.++||++ ++.....|+.+|+.---+.|++|... ....+++.+..+ ..++++|- ..-.
T Consensus 104 ~Lk~~g~~~~i~Tn~~---~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p-~~~l~igDs~~di 179 (224)
T PRK14988 104 ALKASGKRRILLTNAH---PHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKA-ERTLFIDDSEPIL 179 (224)
T ss_pred HHHhCCCeEEEEeCcC---HHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCCh-HHEEEEcCCHHHH
Confidence 3788999999999954 44555667888875434556544321 223334455533 45667773 3455
Q ss_pred HHHHHcCCee
Q 025117 71 KELELAGFQY 80 (257)
Q Consensus 71 ~~l~~~g~~~ 80 (257)
+..+.+|+..
T Consensus 180 ~aA~~aG~~~ 189 (224)
T PRK14988 180 DAAAQFGIRY 189 (224)
T ss_pred HHHHHcCCeE
Confidence 6667889863
No 178
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=85.94 E-value=3.7 Score=32.78 Aligned_cols=76 Identities=18% Similarity=0.217 Sum_probs=46.8
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHHHHHHHHHhcCCCCCCEEEEEc-CHHHHHHHHHcCCee
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDFPKDKKVYVVG-EDGILKELELAGFQY 80 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg-~~~~~~~l~~~g~~~ 80 (257)
|+++|+++.++||.+ .......++++|+..-....-.-.......+++.+.. ...++++| +......++..|+..
T Consensus 60 L~~~Gi~v~I~T~~~---~~~v~~~l~~lgl~~~f~g~~~k~~~l~~~~~~~gl~-~~ev~~VGDs~~D~~~a~~aG~~~ 135 (183)
T PRK09484 60 LLTSGIEVAIITGRK---SKLVEDRMTTLGITHLYQGQSNKLIAFSDLLEKLAIA-PEQVAYIGDDLIDWPVMEKVGLSV 135 (183)
T ss_pred HHHCCCEEEEEeCCC---cHHHHHHHHHcCCceeecCCCcHHHHHHHHHHHhCCC-HHHEEEECCCHHHHHHHHHCCCeE
Confidence 567899999999954 3444556677887521111111234555666666553 34577887 445677778888775
Q ss_pred e
Q 025117 81 L 81 (257)
Q Consensus 81 ~ 81 (257)
.
T Consensus 136 ~ 136 (183)
T PRK09484 136 A 136 (183)
T ss_pred e
Confidence 3
No 179
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=85.93 E-value=4.8 Score=34.07 Aligned_cols=78 Identities=13% Similarity=0.060 Sum_probs=42.3
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechH---------HHHHHHHHhcCCCCCCEEEEEc-CHHHHH
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASS---------FAAAAYLKSIDFPKDKKVYVVG-EDGILK 71 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~---------~~~~~~l~~~~~~~~~~v~vlg-~~~~~~ 71 (257)
|+++|+++.++||++....+.+.+.+.-.++. .+.|+++. ......+++.+..+...++++| +....+
T Consensus 113 L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~--~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e~l~IGDs~~Di~ 190 (267)
T PRK13478 113 LRARGIKIGSTTGYTREMMDVVVPLAAAQGYR--PDHVVTTDDVPAGRPYPWMALKNAIELGVYDVAACVKVDDTVPGIE 190 (267)
T ss_pred HHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCC--ceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcceEEEcCcHHHHH
Confidence 77889999999996654433333333322321 23444332 2233444444542224577777 334556
Q ss_pred HHHHcCCeee
Q 025117 72 ELELAGFQYL 81 (257)
Q Consensus 72 ~l~~~g~~~~ 81 (257)
..+.+|+..+
T Consensus 191 aA~~aG~~~i 200 (267)
T PRK13478 191 EGLNAGMWTV 200 (267)
T ss_pred HHHHCCCEEE
Confidence 6677787654
No 180
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=85.89 E-value=4.3 Score=31.91 Aligned_cols=74 Identities=12% Similarity=0.171 Sum_probs=45.6
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHHH---------HHHHHHhcCCCCCCEEEEEc-CHHHHH
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFA---------AAAYLKSIDFPKDKKVYVVG-EDGILK 71 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~~---------~~~~l~~~~~~~~~~v~vlg-~~~~~~ 71 (257)
|+++|+++.++||+.. . ...|+++|+.---+.++++... ....+++.+..+ +++.++| +....+
T Consensus 99 L~~~g~~~~i~s~~~~--~---~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~-~~~v~vgD~~~di~ 172 (185)
T TIGR01990 99 LKKNNIKIALASASKN--A---PTVLEKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEGLGVSP-SECIGIEDAQAGIE 172 (185)
T ss_pred HHHCCCeEEEEeCCcc--H---HHHHHhcCcHhhCcEEEehhhcCCCCCChHHHHHHHHHcCCCH-HHeEEEecCHHHHH
Confidence 7788999999998432 1 2468889987445667765432 233344444432 3466666 444566
Q ss_pred HHHHcCCeee
Q 025117 72 ELELAGFQYL 81 (257)
Q Consensus 72 ~l~~~g~~~~ 81 (257)
..+.+|++.+
T Consensus 173 aA~~aG~~~i 182 (185)
T TIGR01990 173 AIKAAGMFAV 182 (185)
T ss_pred HHHHcCCEEE
Confidence 6677787654
No 181
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=85.71 E-value=1.3 Score=37.27 Aligned_cols=43 Identities=26% Similarity=0.471 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccC
Q 025117 179 TFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSG 223 (257)
Q Consensus 179 p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G 223 (257)
-...+++++++++++++++.+||| ..|+.+= ..+..+|.|...
T Consensus 167 ~~Al~~L~~~~~~~~~~vl~aGDS-gND~~mL-~~~~~~vvV~Na 209 (247)
T PF05116_consen 167 GAALRYLMERWGIPPEQVLVAGDS-GNDLEML-EGGDHGVVVGNA 209 (247)
T ss_dssp HHHHHHHHHHHT--GGGEEEEESS-GGGHHHH-CCSSEEEE-TTS
T ss_pred HHHHHHHHHHhCCCHHHEEEEeCC-CCcHHHH-cCcCCEEEEcCC
Confidence 367789999999999999999999 6899887 778899988763
No 182
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=85.56 E-value=2.7 Score=34.11 Aligned_cols=78 Identities=15% Similarity=0.219 Sum_probs=40.3
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHH---------HHHHHHHhcCCCCCCEEEEEcC-HHHHH
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSF---------AAAAYLKSIDFPKDKKVYVVGE-DGILK 71 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~---------~~~~~l~~~~~~~~~~v~vlg~-~~~~~ 71 (257)
|+++|+++.++||++...... ...+...|+.---+.|++|.. .....+++.+..+. .++++|. .....
T Consensus 106 L~~~g~~l~i~Sn~~~~~~~~-~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~g~~~~-~~l~i~D~~~di~ 183 (211)
T TIGR02247 106 LRAKGFKTACITNNFPTDHSA-EEALLPGDIMALFDAVVESCLEGLRKPDPRIYQLMLERLGVAPE-ECVFLDDLGSNLK 183 (211)
T ss_pred HHHCCCeEEEEeCCCCccchh-hhHhhhhhhHhhCCEEEEeeecCCCCCCHHHHHHHHHHcCCCHH-HeEEEcCCHHHHH
Confidence 788899999999976544222 223334454322345554421 12233334444333 3444553 23445
Q ss_pred HHHHcCCeee
Q 025117 72 ELELAGFQYL 81 (257)
Q Consensus 72 ~l~~~g~~~~ 81 (257)
..+.+|+..+
T Consensus 184 aA~~aG~~~i 193 (211)
T TIGR02247 184 PAAALGITTI 193 (211)
T ss_pred HHHHcCCEEE
Confidence 5566777654
No 183
>PLN02382 probable sucrose-phosphatase
Probab=85.46 E-value=1.8 Score=39.43 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=38.7
Q ss_pred HHHHHHHHHHh---CCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCC
Q 025117 179 TFMMDYLANKF---GIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGV 224 (257)
Q Consensus 179 p~~~~~~~~~~---~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~ 224 (257)
-..++++++++ |+++++++.+||+ ..|+.+=+.+|..++.|..+.
T Consensus 177 g~Al~~L~~~~~~~gi~~~~~iafGDs-~NDleMl~~ag~~gvam~NA~ 224 (413)
T PLN02382 177 GQALAYLLKKLKAEGKAPVNTLVCGDS-GNDAELFSVPDVYGVMVSNAQ 224 (413)
T ss_pred HHHHHHHHHHhhhcCCChhcEEEEeCC-HHHHHHHhcCCCCEEEEcCCc
Confidence 35678888888 9999999999999 799999999998888886643
No 184
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=85.29 E-value=2.5 Score=41.43 Aligned_cols=65 Identities=12% Similarity=-0.001 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHHHHHHhh
Q 025117 179 TFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKAAA 256 (257)
Q Consensus 179 p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~~~l~~~ 256 (257)
-...+.+++ +.+++.++++||+ .+|+.+-+.++-.+..|.-|.. ...++|++++..|+.++|+.+
T Consensus 659 G~al~~ll~--~~~~d~vl~~GD~-~nDe~Mf~~~~~~~~~v~vG~~----------~s~A~~~l~~~~eV~~~L~~l 723 (726)
T PRK14501 659 GRAVRRLLE--AGPYDFVLAIGDD-TTDEDMFRALPETAITVKVGPG----------ESRARYRLPSQREVRELLRRL 723 (726)
T ss_pred HHHHHHHHh--cCCCCEEEEECCC-CChHHHHHhcccCceEEEECCC----------CCcceEeCCCHHHHHHHHHHH
Confidence 345556665 6788999999999 6999999887533333433431 136789999999988887764
No 185
>PRK09449 dUMP phosphatase; Provisional
Probab=84.74 E-value=4.4 Score=33.12 Aligned_cols=76 Identities=20% Similarity=0.185 Sum_probs=47.7
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHH---------HHHHHHHhcCCCCCCEEEEEcCH--HHH
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSF---------AAAAYLKSIDFPKDKKVYVVGED--GIL 70 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~---------~~~~~l~~~~~~~~~~v~vlg~~--~~~ 70 (257)
|+ .|+++.++||++ ++.....|+++|+.---+.|++|.. .....+++.+..+...++++|-. ...
T Consensus 107 L~-~~~~~~i~Tn~~---~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~~vgD~~~~Di 182 (224)
T PRK09449 107 LR-GKVKMGIITNGF---TELQQVRLERTGLRDYFDLLVISEQVGVAKPDVAIFDYALEQMGNPDRSRVLMVGDNLHSDI 182 (224)
T ss_pred HH-hCCeEEEEeCCc---HHHHHHHHHhCChHHHcCEEEEECccCCCCCCHHHHHHHHHHcCCCCcccEEEEcCCcHHHH
Confidence 56 579999999954 3455566888888643455555432 23333444444333568888854 256
Q ss_pred HHHHHcCCeee
Q 025117 71 KELELAGFQYL 81 (257)
Q Consensus 71 ~~l~~~g~~~~ 81 (257)
+..+.+|+..+
T Consensus 183 ~~A~~aG~~~i 193 (224)
T PRK09449 183 LGGINAGIDTC 193 (224)
T ss_pred HHHHHCCCcEE
Confidence 67788898754
No 186
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=84.46 E-value=8.5 Score=31.28 Aligned_cols=76 Identities=18% Similarity=0.248 Sum_probs=47.6
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceech---------HHHHHHHHHhcCCCCCCEEEEEcC-HHHHH
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFAS---------SFAAAAYLKSIDFPKDKKVYVVGE-DGILK 71 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts---------~~~~~~~l~~~~~~~~~~v~vlg~-~~~~~ 71 (257)
|++.|+++.++||+.. ......++.+|+.---+.++++ .......+++.+.. .++++++|- ....+
T Consensus 105 l~~~g~~~~i~S~~~~---~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~-~~~~i~igD~~~Di~ 180 (226)
T PRK13222 105 LKAAGYPLAVVTNKPT---PFVAPLLEALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKLGLD-PEEMLFVGDSRNDIQ 180 (226)
T ss_pred HHHCCCeEEEEeCCCH---HHHHHHHHHcCCccCccEEEcCCCCCCCCcChHHHHHHHHHcCCC-hhheEEECCCHHHHH
Confidence 6778999999999653 4445667778875333445543 22334444454443 356778884 45667
Q ss_pred HHHHcCCeee
Q 025117 72 ELELAGFQYL 81 (257)
Q Consensus 72 ~l~~~g~~~~ 81 (257)
..+.+|+...
T Consensus 181 ~a~~~g~~~i 190 (226)
T PRK13222 181 AARAAGCPSV 190 (226)
T ss_pred HHHHCCCcEE
Confidence 7788888654
No 187
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=84.22 E-value=12 Score=28.55 Aligned_cols=80 Identities=24% Similarity=0.253 Sum_probs=45.9
Q ss_pred ChhccCCcEEEEeCCCCcC------------HHHHHHHHHhCCCCCCC---------Cce--e-chHHHHHHHHHhcCCC
Q 025117 1 MLRSKGKRLVFVTNNSTKS------------RKQYGKKFETLGLTVTE---------EEI--F-ASSFAAAAYLKSIDFP 56 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~~------------~~~~~~~L~~~G~~~~~---------~~i--~-ts~~~~~~~l~~~~~~ 56 (257)
.|+++|+++.++||++... .+.+...|+.+|+.... ++. - -........+++.+..
T Consensus 38 ~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~ 117 (147)
T TIGR01656 38 TLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVLFCPHHPADNCSCRKPKPGLILEALKRLGVD 117 (147)
T ss_pred HHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCC
Confidence 3788999999999976311 13455667888886210 111 0 1122334444555543
Q ss_pred CCCEEEEEcC-HHHHHHHHHcCCeee
Q 025117 57 KDKKVYVVGE-DGILKELELAGFQYL 81 (257)
Q Consensus 57 ~~~~v~vlg~-~~~~~~l~~~g~~~~ 81 (257)
...++++|- ....+..+.+|++.+
T Consensus 118 -~~e~i~IGDs~~Di~~A~~~Gi~~v 142 (147)
T TIGR01656 118 -ASRSLVVGDRLRDLQAARNAGLAAV 142 (147)
T ss_pred -hHHEEEEcCCHHHHHHHHHCCCCEE
Confidence 345777875 445566677787654
No 188
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=84.04 E-value=5.6 Score=35.86 Aligned_cols=77 Identities=14% Similarity=0.183 Sum_probs=50.2
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHH---------HHHHHHHhcCCCCCCEEEEEcC-HHHHH
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSF---------AAAAYLKSIDFPKDKKVYVVGE-DGILK 71 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~---------~~~~~l~~~~~~~~~~v~vlg~-~~~~~ 71 (257)
|++.|+++.++|| .+++.+...|+++|+.---+.|+++.. .....+++.+..+ ..++++|- ....+
T Consensus 228 Lk~~GiklaIaSn---~~~~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~P-eecl~IGDS~~DIe 303 (381)
T PLN02575 228 LMNYKIPMALVST---RPRKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNFIP-ERCIVFGNSNQTVE 303 (381)
T ss_pred HHHCCCeEEEEeC---CCHHHHHHHHHHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcCCCc-ccEEEEcCCHHHHH
Confidence 7889999999999 446666777888888644445555433 2233344445433 45667774 45667
Q ss_pred HHHHcCCeeeC
Q 025117 72 ELELAGFQYLG 82 (257)
Q Consensus 72 ~l~~~g~~~~~ 82 (257)
..+.+|+..+.
T Consensus 304 AAk~AGm~~Ig 314 (381)
T PLN02575 304 AAHDARMKCVA 314 (381)
T ss_pred HHHHcCCEEEE
Confidence 77888887664
No 189
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=83.76 E-value=1 Score=37.72 Aligned_cols=81 Identities=16% Similarity=0.167 Sum_probs=55.1
Q ss_pred eEEEecCCCccccCCCcccccCchHH--HHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHH
Q 025117 135 LFIATNRDAVTHLTDAQEWAGGGSMV--GAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQN 212 (257)
Q Consensus 135 ~~i~tn~d~~~~~~~~~~~~~~g~~~--~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~ 212 (257)
-+++|+...+-... .....+++++| +-|+++. .+||. ..|+.+.+++|-+.-.-+.|||. ..--.+|+.
T Consensus 178 NvLVTs~qLVPaLa-KcLLy~L~~~f~ieNIYSa~-----kvGK~--~cFe~I~~Rfg~p~~~f~~IGDG-~eEe~aAk~ 248 (274)
T TIGR01658 178 NVLVTSGQLIPSLA-KCLLFRLDTIFRIENVYSSI-----KVGKL--QCFKWIKERFGHPKVRFCAIGDG-WEECTAAQA 248 (274)
T ss_pred EEEEEcCccHHHHH-HHHHhccCCccccccccchh-----hcchH--HHHHHHHHHhCCCCceEEEeCCC-hhHHHHHHh
Confidence 45666665532211 22344555554 2222222 23664 89999999999888899999999 577899999
Q ss_pred cCCeEEEEccCC
Q 025117 213 GGCKTLLVLSGV 224 (257)
Q Consensus 213 aG~~ti~V~~G~ 224 (257)
.++..+-|....
T Consensus 249 l~wPFw~I~~h~ 260 (274)
T TIGR01658 249 MNWPFVKIDLHP 260 (274)
T ss_pred cCCCeEEeecCC
Confidence 999998887654
No 190
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=82.96 E-value=4.4 Score=33.46 Aligned_cols=77 Identities=16% Similarity=0.115 Sum_probs=45.7
Q ss_pred ChhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHH---------HHHHHHHhcCCCCCCEEEEEcC-HHHH
Q 025117 1 MLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSF---------AAAAYLKSIDFPKDKKVYVVGE-DGIL 70 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~---------~~~~~l~~~~~~~~~~v~vlg~-~~~~ 70 (257)
+|++.|+++.++||++. ......|.++|+.-.-+.|+++.. .....+++.+.. ...++++|- ....
T Consensus 106 ~L~~~g~~l~i~Tn~~~---~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~-p~~~l~IGDs~~Di 181 (229)
T PRK13226 106 RLECAGCVWGIVTNKPE---YLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVA-PTDCVYVGDDERDI 181 (229)
T ss_pred HHHHCCCeEEEECCCCH---HHHHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCC-hhhEEEeCCCHHHH
Confidence 37889999999999654 344445777887533333443221 123333444543 355777774 3455
Q ss_pred HHHHHcCCeee
Q 025117 71 KELELAGFQYL 81 (257)
Q Consensus 71 ~~l~~~g~~~~ 81 (257)
+..+.+|+..+
T Consensus 182 ~aA~~aG~~~i 192 (229)
T PRK13226 182 LAARAAGMPSV 192 (229)
T ss_pred HHHHHCCCcEE
Confidence 66677887765
No 191
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=82.52 E-value=1.3 Score=35.34 Aligned_cols=44 Identities=23% Similarity=0.300 Sum_probs=32.1
Q ss_pred CCcHHHHH--HHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCC
Q 025117 176 KPSTFMMD--YLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGV 224 (257)
Q Consensus 176 KP~p~~~~--~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~ 224 (257)
||.|.-|. +.+...++ -++-||| ..||.+|+.+|++.|.+++-.
T Consensus 169 k~k~~qy~Kt~~i~~~~~----~IhYGDS-D~Di~AAkeaG~RgIRilRAa 214 (237)
T COG3700 169 KPKPGQYTKTQWIQDKNI----RIHYGDS-DNDITAAKEAGARGIRILRAA 214 (237)
T ss_pred CCCcccccccHHHHhcCc----eEEecCC-chhhhHHHhcCccceeEEecC
Confidence 56555444 33444443 5789999 899999999999999997643
No 192
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=82.19 E-value=4.7 Score=31.73 Aligned_cols=77 Identities=17% Similarity=0.229 Sum_probs=44.3
Q ss_pred hhccCCcEEEEeCCCCcC-----H----HHHHHHHHhCCCCCCCCceechH---------HHHHHHHHhcC--CCCCCEE
Q 025117 2 LRSKGKRLVFVTNNSTKS-----R----KQYGKKFETLGLTVTEEEIFASS---------FAAAAYLKSID--FPKDKKV 61 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~-----~----~~~~~~L~~~G~~~~~~~i~ts~---------~~~~~~l~~~~--~~~~~~v 61 (257)
|+++|+++.++||++... . +.+...|+.+|++. +.++++. ......+++.+ .. ...+
T Consensus 54 Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~~--~~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~-~~~~ 130 (166)
T TIGR01664 54 LDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVPI--QVLAATHAGLYRKPMTGMWEYLQSQYNSPIK-MTRS 130 (166)
T ss_pred HHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCCE--EEEEecCCCCCCCCccHHHHHHHHHcCCCCC-chhc
Confidence 788999999999976531 2 23455678889863 2333221 12223333333 32 2457
Q ss_pred EEEcCHH---------HHHHHHHcCCeee
Q 025117 62 YVVGEDG---------ILKELELAGFQYL 81 (257)
Q Consensus 62 ~vlg~~~---------~~~~l~~~g~~~~ 81 (257)
+++|-.. ..+..+.+|+...
T Consensus 131 v~VGD~~~~~~~~~~~Di~aA~~aGi~~~ 159 (166)
T TIGR01664 131 FYVGDAAGRKLDFSDADIKFAKNLGLEFK 159 (166)
T ss_pred EEEECCCCCCCCCchhHHHHHHHCCCCcC
Confidence 7777542 5666677787653
No 193
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=81.71 E-value=25 Score=32.56 Aligned_cols=70 Identities=21% Similarity=0.229 Sum_probs=48.7
Q ss_pred CCCcCHHHHHHHHH-hCCCCCCCCcee-chHHH-HHHHHHhcCCCCCCEEEE--EcCHHHHHHHHHcCCeeeCCC
Q 025117 15 NSTKSRKQYGKKFE-TLGLTVTEEEIF-ASSFA-AAAYLKSIDFPKDKKVYV--VGEDGILKELELAGFQYLGGP 84 (257)
Q Consensus 15 ~s~~~~~~~~~~L~-~~G~~~~~~~i~-ts~~~-~~~~l~~~~~~~~~~v~v--lg~~~~~~~l~~~g~~~~~~~ 84 (257)
+-...++.+++.|. ..|+.++++||+ |+|.. +.+.+.+.-..+|.+|.+ -+-.+..+.|+.+|++....+
T Consensus 133 G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l~~~~l~~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp 207 (459)
T COG1167 133 GLPELREAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLLLDPGDTVLVEDPTYPGALQALEALGARVIPVP 207 (459)
T ss_pred CcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHHHHHHHcCCcEEecC
Confidence 33456788999998 899999998865 66654 334444443446777766 344578899999998887543
No 194
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=81.40 E-value=8.2 Score=33.06 Aligned_cols=77 Identities=19% Similarity=0.237 Sum_probs=45.9
Q ss_pred ChhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCC------CCceechHHHHHHHHHhcCCCCCCEEEEEcC-HHHHHHH
Q 025117 1 MLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVT------EEEIFASSFAAAAYLKSIDFPKDKKVYVVGE-DGILKEL 73 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~------~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~-~~~~~~l 73 (257)
+|++.|+++.++||++ .+.+...|+.+|+.-. .+++..........+++.+..+ ..++++|- ....+..
T Consensus 153 ~L~~~gi~laIvSn~~---~~~~~~~L~~~gl~~~F~~vi~~~~~~~k~~~~~~~l~~~~~~p-~~~l~IGDs~~Di~aA 228 (273)
T PRK13225 153 QLRSRSLCLGILSSNS---RQNIEAFLQRQGLRSLFSVVQAGTPILSKRRALSQLVAREGWQP-AAVMYVGDETRDVEAA 228 (273)
T ss_pred HHHHCCCeEEEEeCCC---HHHHHHHHHHcCChhheEEEEecCCCCCCHHHHHHHHHHhCcCh-hHEEEECCCHHHHHHH
Confidence 3778899999999954 4555666788887522 2222222233344444444433 45777774 3445666
Q ss_pred HHcCCeee
Q 025117 74 ELAGFQYL 81 (257)
Q Consensus 74 ~~~g~~~~ 81 (257)
+.+|+..+
T Consensus 229 ~~AG~~~I 236 (273)
T PRK13225 229 RQVGLIAV 236 (273)
T ss_pred HHCCCeEE
Confidence 77887764
No 195
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=81.40 E-value=12 Score=29.58 Aligned_cols=75 Identities=16% Similarity=0.205 Sum_probs=44.0
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHH-------------HHHHHHHhcCCCCCCEEEEEcC-H
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSF-------------AAAAYLKSIDFPKDKKVYVVGE-D 67 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~-------------~~~~~l~~~~~~~~~~v~vlg~-~ 67 (257)
|+...+++.++||++ +......|+.+|+.---+.|+++.. .....+++.+..+ ..++++|- .
T Consensus 93 L~~L~~~~~i~Tn~~---~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~-~~~l~vgD~~ 168 (184)
T TIGR01993 93 LLRLPGRKIIFTNGD---RAHARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKALREAGVDP-ERAIFFDDSA 168 (184)
T ss_pred HHhCCCCEEEEeCCC---HHHHHHHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHHHHhCCCc-cceEEEeCCH
Confidence 344456899999955 3456677788888533455665432 2233344445433 34566663 3
Q ss_pred HHHHHHHHcCCee
Q 025117 68 GILKELELAGFQY 80 (257)
Q Consensus 68 ~~~~~l~~~g~~~ 80 (257)
...+..+.+|++.
T Consensus 169 ~di~aA~~~G~~~ 181 (184)
T TIGR01993 169 RNIAAAKALGMKT 181 (184)
T ss_pred HHHHHHHHcCCEE
Confidence 4455667777764
No 196
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=80.97 E-value=18 Score=29.70 Aligned_cols=56 Identities=18% Similarity=0.291 Sum_probs=42.2
Q ss_pred HHHHHHHHHhCCCCCCCCceechHHHHHHHHHhcCCCCCCEEEEEcC------HHHHHHHHHcCCeeeC
Q 025117 20 RKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGE------DGILKELELAGFQYLG 82 (257)
Q Consensus 20 ~~~~~~~L~~~G~~~~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~------~~~~~~l~~~g~~~~~ 82 (257)
.+++++++++.+ .-.++|++.+..+-|+..+. +++.++.. ....+.|+..||.++.
T Consensus 87 d~ei~~~ie~~~----~v~vvTts~Avv~aL~al~a---~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~ 148 (238)
T COG3473 87 DKEIAQRIEEAK----GVPVVTTSTAVVEALNALGA---QRISVLTPYIDEVNQREIEFLEANGFEIVD 148 (238)
T ss_pred hHHHHHHHHhcc----CCceeechHHHHHHHHhhCc---ceEEEeccchhhhhhHHHHHHHhCCeEEEE
Confidence 577888888755 33578999999999987754 67777754 2456778889999874
No 197
>PLN02940 riboflavin kinase
Probab=80.92 E-value=8.1 Score=34.82 Aligned_cols=78 Identities=15% Similarity=0.162 Sum_probs=48.7
Q ss_pred ChhccCCcEEEEeCCCCcCHHHHHHHHH-hCCCCCCCCceechHH---------HHHHHHHhcCCCCCCEEEEEc-CHHH
Q 025117 1 MLRSKGKRLVFVTNNSTKSRKQYGKKFE-TLGLTVTEEEIFASSF---------AAAAYLKSIDFPKDKKVYVVG-EDGI 69 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~~~~~~~~~L~-~~G~~~~~~~i~ts~~---------~~~~~l~~~~~~~~~~v~vlg-~~~~ 69 (257)
+|++.|+++.++||++ +..+...|. ..|+.---+-|+++.. .....+++.+..+ +.++++| +...
T Consensus 104 ~Lk~~g~~l~IvTn~~---~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p-~~~l~VGDs~~D 179 (382)
T PLN02940 104 HLKSHGVPMALASNSP---RANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEP-SNCLVIEDSLPG 179 (382)
T ss_pred HHHHCCCcEEEEeCCc---HHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcCCCh-hHEEEEeCCHHH
Confidence 3778999999999964 334445665 5777544455555543 2334444555543 4566777 4455
Q ss_pred HHHHHHcCCeeeC
Q 025117 70 LKELELAGFQYLG 82 (257)
Q Consensus 70 ~~~l~~~g~~~~~ 82 (257)
.+..+.+|+..+.
T Consensus 180 i~aA~~aGi~~I~ 192 (382)
T PLN02940 180 VMAGKAAGMEVIA 192 (382)
T ss_pred HHHHHHcCCEEEE
Confidence 6667888988664
No 198
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=80.31 E-value=5.1 Score=32.14 Aligned_cols=38 Identities=26% Similarity=0.214 Sum_probs=27.5
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceech
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFAS 42 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts 42 (257)
|++.|.++.++||+ +++.....|+.+|+.--.+.++++
T Consensus 118 l~~~g~~~~i~T~~---~~~~~~~~l~~~gl~~~f~~~~~~ 155 (197)
T TIGR01548 118 LHRAPKGMAVVTGR---PRKDAAKFLTTHGLEILFPVQIWM 155 (197)
T ss_pred HHHcCCcEEEECCC---CHHHHHHHHHHcCchhhCCEEEee
Confidence 67789999999995 455666778889987434555543
No 199
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=80.20 E-value=1.9 Score=36.33 Aligned_cols=44 Identities=20% Similarity=0.332 Sum_probs=35.8
Q ss_pred cHHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccC
Q 025117 178 STFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSG 223 (257)
Q Consensus 178 ~p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G 223 (257)
+-...+.+++.+|+++++++.+||+ ..|+.+=+.+|. ++.+..+
T Consensus 190 K~~al~~l~~~lgi~~~~v~afGD~-~ND~~Ml~~ag~-gvam~Na 233 (264)
T COG0561 190 KGYALQRLAKLLGIKLEEVIAFGDS-TNDIEMLEVAGL-GVAMGNA 233 (264)
T ss_pred hHHHHHHHHHHhCCCHHHeEEeCCc-cccHHHHHhcCe-eeeccCC
Confidence 3467788899999999999999999 799999998884 4445444
No 200
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=79.79 E-value=6.8 Score=32.44 Aligned_cols=79 Identities=14% Similarity=0.101 Sum_probs=41.4
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCC--CC--CCceec---hHHHHHHHHHhcCCCCCCEEEEEc-CHHHHHHH
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT--VT--EEEIFA---SSFAAAAYLKSIDFPKDKKVYVVG-EDGILKEL 73 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~--~~--~~~i~t---s~~~~~~~l~~~~~~~~~~v~vlg-~~~~~~~l 73 (257)
|+++|+++.++||++....+.+.+.+...++. ++ -+.++. ........+++.+..+ ..++++| +....+..
T Consensus 107 Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~~~fd~~~g~KP~p~~y~~i~~~lgv~p-~e~lfVgDs~~Di~AA 185 (220)
T TIGR01691 107 WLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFSGYFDTTVGLKTEAQSYVKIAGQLGSPP-REILFLSDIINELDAA 185 (220)
T ss_pred HHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcceEEEeCcccCCCHHHHHHHHHHhCcCh-hHEEEEeCCHHHHHHH
Confidence 67899999999996544333333322111221 11 011111 1123344445555543 4566666 44556677
Q ss_pred HHcCCeee
Q 025117 74 ELAGFQYL 81 (257)
Q Consensus 74 ~~~g~~~~ 81 (257)
+.+|+..+
T Consensus 186 ~~AG~~ti 193 (220)
T TIGR01691 186 RKAGLHTG 193 (220)
T ss_pred HHcCCEEE
Confidence 88898765
No 201
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=79.44 E-value=7.5 Score=31.52 Aligned_cols=75 Identities=29% Similarity=0.359 Sum_probs=49.0
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHH---------HHHHHHHhc-CCCCCCEEEEEcCH--HH
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSF---------AAAAYLKSI-DFPKDKKVYVVGED--GI 69 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~---------~~~~~l~~~-~~~~~~~v~vlg~~--~~ 69 (257)
|+++ +++.++||++ .+.+...|+++|+.---+.|++|.. .....+++. +..+ ..+.++|-. ..
T Consensus 109 l~~~-~~~~i~Sn~~---~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~-~~~v~igD~~~~d 183 (224)
T TIGR02254 109 LQQK-FRLYIVTNGV---RETQYKRLRKSGLFPFFDDIFVSEDAGIQKPDKEIFNYALERMPKFSK-EEVLMIGDSLTAD 183 (224)
T ss_pred HHhc-CcEEEEeCCc---hHHHHHHHHHCCcHhhcCEEEEcCccCCCCCCHHHHHHHHHHhcCCCc-hheEEECCCcHHH
Confidence 5677 8999999965 4555667888898655566665533 334445554 5433 457788753 35
Q ss_pred HHHHHHcCCeee
Q 025117 70 LKELELAGFQYL 81 (257)
Q Consensus 70 ~~~l~~~g~~~~ 81 (257)
.+..+..|+..+
T Consensus 184 i~~A~~~G~~~i 195 (224)
T TIGR02254 184 IKGGQNAGLDTC 195 (224)
T ss_pred HHHHHHCCCcEE
Confidence 666788897664
No 202
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=78.93 E-value=12 Score=29.79 Aligned_cols=77 Identities=18% Similarity=0.143 Sum_probs=44.6
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCC--------CCceechH-----------HHHHHHHHhcCCCCCCEEE
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVT--------EEEIFASS-----------FAAAAYLKSIDFPKDKKVY 62 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~--------~~~i~ts~-----------~~~~~~l~~~~~~~~~~v~ 62 (257)
|+++|.+++++||+.. ..+...++.+|+.-- .....++. ..+..++++.+.. ...++
T Consensus 92 l~~~g~~~~IvS~~~~---~~~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~~~~~~-~~~~i 167 (201)
T TIGR01491 92 LKEKGLKTAIVSGGIM---CLAKKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKRELNPS-LTETV 167 (201)
T ss_pred HHHCCCEEEEEeCCcH---HHHHHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHHHhCCC-HHHEE
Confidence 6788999999999643 333344566776411 11121211 2444555554442 34577
Q ss_pred EEc-CHHHHHHHHHcCCeeeC
Q 025117 63 VVG-EDGILKELELAGFQYLG 82 (257)
Q Consensus 63 vlg-~~~~~~~l~~~g~~~~~ 82 (257)
++| +......++.+|+....
T Consensus 168 ~iGDs~~D~~~a~~ag~~~a~ 188 (201)
T TIGR01491 168 AVGDSKNDLPMFEVADISISL 188 (201)
T ss_pred EEcCCHhHHHHHHhcCCeEEE
Confidence 777 44566777888887764
No 203
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=78.82 E-value=7.7 Score=31.16 Aligned_cols=76 Identities=16% Similarity=0.213 Sum_probs=39.7
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHh-CCCCCCCCceechHH---------HHHHHHHhcCCCCCCEEEEEc-CHHHH
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFET-LGLTVTEEEIFASSF---------AAAAYLKSIDFPKDKKVYVVG-EDGIL 70 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~-~G~~~~~~~i~ts~~---------~~~~~l~~~~~~~~~~v~vlg-~~~~~ 70 (257)
|+++|+++.++||++....+. .+.. .|+.---+.|++|.. .....+++.+..+ ..++++| +..-.
T Consensus 96 l~~~g~~~~i~Sn~~~~~~~~---~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~~~p-~~~l~vgD~~~di 171 (199)
T PRK09456 96 LREQGHRVVVLSNTNRLHTTF---WPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEGFSA-ADAVFFDDNADNI 171 (199)
T ss_pred HHhCCCcEEEEcCCchhhHHH---HHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcCCCh-hHeEEeCCCHHHH
Confidence 678899999999966433221 1222 233322344554432 2233344445433 3455666 33345
Q ss_pred HHHHHcCCeee
Q 025117 71 KELELAGFQYL 81 (257)
Q Consensus 71 ~~l~~~g~~~~ 81 (257)
+..+..|+..+
T Consensus 172 ~aA~~aG~~~i 182 (199)
T PRK09456 172 EAANALGITSI 182 (199)
T ss_pred HHHHHcCCEEE
Confidence 55667787654
No 204
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=78.35 E-value=1.3 Score=40.51 Aligned_cols=49 Identities=20% Similarity=0.178 Sum_probs=44.9
Q ss_pred cccCCCcHHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEE
Q 025117 172 LVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLV 220 (257)
Q Consensus 172 ~~~gKP~p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V 220 (257)
....|-+-..|..++..-+++|...++|||+...|+..+++.|+.|.+-
T Consensus 153 ~rl~KnSg~LFk~Vlk~EnVd~~~w~H~GDN~~aD~l~pk~LgI~Tlf~ 201 (635)
T COG5610 153 FRLKKNSGNLFKAVLKLENVDPKKWIHCGDNWVADYLKPKNLGISTLFY 201 (635)
T ss_pred eehhcccchHHHHHHhhcCCChhheEEecCchhhhhcCccccchhHHHH
Confidence 3467999999999999999999999999999999999999999988766
No 205
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=77.91 E-value=11 Score=29.59 Aligned_cols=72 Identities=13% Similarity=0.095 Sum_probs=43.6
Q ss_pred CCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHHH---------HHHHHHhcCCCCCCEEEEEcC-HHHHHHHHH
Q 025117 6 GKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFA---------AAAYLKSIDFPKDKKVYVVGE-DGILKELEL 75 (257)
Q Consensus 6 g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~~---------~~~~l~~~~~~~~~~v~vlg~-~~~~~~l~~ 75 (257)
++++.++||+ +.+.....|+++|+.---+.|+++... ....+++.+..+ ..++++|- ....+..+.
T Consensus 102 ~~~l~I~T~~---~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~-~~~l~igDs~~di~aA~~ 177 (188)
T PRK10725 102 RRPMAVGTGS---ESAIAEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGVQP-TQCVVFEDADFGIQAARA 177 (188)
T ss_pred CCCEEEEcCC---chHHHHHHHHhCCcHhHceEEEehhhccCCCCChHHHHHHHHHcCCCH-HHeEEEeccHhhHHHHHH
Confidence 4789999994 345556778888986444567776542 333334444433 34555663 345566677
Q ss_pred cCCeee
Q 025117 76 AGFQYL 81 (257)
Q Consensus 76 ~g~~~~ 81 (257)
+|+..+
T Consensus 178 aG~~~i 183 (188)
T PRK10725 178 AGMDAV 183 (188)
T ss_pred CCCEEE
Confidence 887765
No 206
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=76.84 E-value=19 Score=29.10 Aligned_cols=76 Identities=16% Similarity=0.217 Sum_probs=42.4
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCC-C------Cceec------------hHHHHHHHHHhcCCCCCCEEE
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVT-E------EEIFA------------SSFAAAAYLKSIDFPKDKKVY 62 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~-~------~~i~t------------s~~~~~~~l~~~~~~~~~~v~ 62 (257)
|+++|.+++++||+. .......++.+|++-- . +.+++ -.......+++.+..+ ..++
T Consensus 97 l~~~g~~~~IvS~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~-~~~i 172 (219)
T TIGR00338 97 LKEKGYKVAVISGGF---DLFAEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILLRKEGISP-ENTV 172 (219)
T ss_pred HHHCCCEEEEECCCc---HHHHHHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCcccHHHHHHHHHHcCCCH-HHEE
Confidence 678899999999965 3334444566787521 1 12211 1223344444544432 3466
Q ss_pred EEc-CHHHHHHHHHcCCeee
Q 025117 63 VVG-EDGILKELELAGFQYL 81 (257)
Q Consensus 63 vlg-~~~~~~~l~~~g~~~~ 81 (257)
++| +....+.++.+|+.+.
T Consensus 173 ~iGDs~~Di~aa~~ag~~i~ 192 (219)
T TIGR00338 173 AVGDGANDLSMIKAAGLGIA 192 (219)
T ss_pred EEECCHHHHHHHHhCCCeEE
Confidence 677 3445666777776554
No 207
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=75.91 E-value=9.8 Score=30.43 Aligned_cols=69 Identities=19% Similarity=0.286 Sum_probs=38.3
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechH------HHHHHHHHhcCCCCCCEEEEEcCH-HHHHHHH
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASS------FAAAAYLKSIDFPKDKKVYVVGED-GILKELE 74 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~------~~~~~~l~~~~~~~~~~v~vlg~~-~~~~~l~ 74 (257)
|++.|+++.++|+.+ +.......+.+|+. ...|+... +.....+++.+.. +.+|.++|-. .....++
T Consensus 139 L~~~Gi~~~i~TGD~---~~~a~~~~~~lgi~--~~~v~a~~~~kP~~k~~~~~i~~l~~~-~~~v~~vGDg~nD~~al~ 212 (215)
T PF00702_consen 139 LKEAGIKVAILTGDN---ESTASAIAKQLGIF--DSIVFARVIGKPEPKIFLRIIKELQVK-PGEVAMVGDGVNDAPALK 212 (215)
T ss_dssp HHHTTEEEEEEESSE---HHHHHHHHHHTTSC--SEEEEESHETTTHHHHHHHHHHHHTCT-GGGEEEEESSGGHHHHHH
T ss_pred hhccCcceeeeeccc---cccccccccccccc--cccccccccccccchhHHHHHHHHhcC-CCEEEEEccCHHHHHHHH
Confidence 788999999999854 33444445568882 11133222 1234555554432 3478888743 3444444
Q ss_pred Hc
Q 025117 75 LA 76 (257)
Q Consensus 75 ~~ 76 (257)
.+
T Consensus 213 ~A 214 (215)
T PF00702_consen 213 AA 214 (215)
T ss_dssp HS
T ss_pred hC
Confidence 43
No 208
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=74.96 E-value=17 Score=30.91 Aligned_cols=76 Identities=17% Similarity=0.228 Sum_probs=45.2
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechH-----H----HHHHHHHhcCCCCCCEEEEEc-CHHHHH
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASS-----F----AAAAYLKSIDFPKDKKVYVVG-EDGILK 71 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~-----~----~~~~~l~~~~~~~~~~v~vlg-~~~~~~ 71 (257)
|++.|.++.++||++. +.+...|..+|+.---+.|+++. + .....+++.++. ...++++| +....+
T Consensus 113 Lk~~g~~l~ivTn~~~---~~~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~-~~~~l~IGD~~~Di~ 188 (272)
T PRK13223 113 LKKQGVEMALITNKPE---RFVAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKMAGVP-PSQSLFVGDSRSDVL 188 (272)
T ss_pred HHHCCCeEEEEECCcH---HHHHHHHHHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHHhCCC-hhHEEEECCCHHHHH
Confidence 6778999999999653 34445667777753223344321 1 233444444543 24566777 445667
Q ss_pred HHHHcCCeee
Q 025117 72 ELELAGFQYL 81 (257)
Q Consensus 72 ~l~~~g~~~~ 81 (257)
..+..|+...
T Consensus 189 aA~~aGi~~i 198 (272)
T PRK13223 189 AAKAAGVQCV 198 (272)
T ss_pred HHHHCCCeEE
Confidence 7788898754
No 209
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=74.92 E-value=22 Score=29.81 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=21.1
Q ss_pred CCCccEEEEeccCCCCHHHHHHHHHHHHcCCCceEEEecCCCcc
Q 025117 102 DKDVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVT 145 (257)
Q Consensus 102 ~~~~~aVv~~~d~~~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~ 145 (257)
.+++|||++.=-..-+++-+. .+...-|+++|.+|.-..|
T Consensus 179 ~~~aDAifisCTnLrt~~vi~----~lE~~lGkPVlsSNqat~W 218 (239)
T TIGR02990 179 DPDADALFLSCTALRAATCAQ----RIEQAIGKPVVTSNQATAW 218 (239)
T ss_pred CCCCCEEEEeCCCchhHHHHH----HHHHHHCCCEEEHHHHHHH
Confidence 456788888733222232222 2222236778878876544
No 210
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=74.24 E-value=3.6 Score=34.34 Aligned_cols=33 Identities=12% Similarity=0.174 Sum_probs=28.2
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCC
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTV 34 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~ 34 (257)
|+++|..|+|+||-+...++...+-|.+.|++.
T Consensus 132 l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~ 164 (229)
T TIGR01675 132 IIELGIKIFLLSGRWEELRNATLDNLINAGFTG 164 (229)
T ss_pred HHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCC
Confidence 678999999999977666777888999999983
No 211
>PLN03017 trehalose-phosphatase
Probab=74.20 E-value=13 Score=33.35 Aligned_cols=67 Identities=16% Similarity=0.133 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhCCCC---CcEEEEcCChhhHHHHHHHc---C-CeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHHH
Q 025117 179 TFMMDYLANKFGIQK---SQICMVGDRLDTDILFGQNG---G-CKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLS 251 (257)
Q Consensus 179 p~~~~~~~~~~~~~~---~~~~~IGD~~~~Di~~A~~a---G-~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~~ 251 (257)
-...+.+++.++... .-.++|||+ .||--+=+.+ | --+|.|... .. ...+.|.+++..|+.+
T Consensus 285 G~Av~~LL~~l~~~~~~~~~pvyiGDD-~TDEDaF~~L~~~~~G~gI~VG~~--~k--------~T~A~y~L~dp~eV~~ 353 (366)
T PLN03017 285 GKALEFLLESLGFGNTNNVFPVYIGDD-RTDEDAFKMLRDRGEGFGILVSKF--PK--------DTDASYSLQDPSEVMD 353 (366)
T ss_pred HHHHHHHHHhcccccCCCceEEEeCCC-CccHHHHHHHhhcCCceEEEECCC--CC--------CCcceEeCCCHHHHHH
Confidence 356777888877542 248999999 6996553333 2 245666431 11 1367899999999998
Q ss_pred HHHhh
Q 025117 252 LKAAA 256 (257)
Q Consensus 252 ~l~~~ 256 (257)
+|..+
T Consensus 354 fL~~L 358 (366)
T PLN03017 354 FLARL 358 (366)
T ss_pred HHHHH
Confidence 88754
No 212
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=73.27 E-value=21 Score=27.01 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=18.8
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHH
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKK 26 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~ 26 (257)
|++.|+++.++||++........+.
T Consensus 76 L~~~g~~~~i~T~~~~~~~~~~~~~ 100 (154)
T TIGR01549 76 LKEAGIKLGIISNGSLRAQKLLLRK 100 (154)
T ss_pred HHHCcCeEEEEeCCchHHHHHHHHH
Confidence 6788999999999776555555554
No 213
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=72.67 E-value=4.9 Score=31.68 Aligned_cols=31 Identities=16% Similarity=0.269 Sum_probs=23.0
Q ss_pred HHHHHHH---HHHhCCCCCcEEEEcCChhhHHHHHH
Q 025117 179 TFMMDYL---ANKFGIQKSQICMVGDRLDTDILFGQ 211 (257)
Q Consensus 179 p~~~~~~---~~~~~~~~~~~~~IGD~~~~Di~~A~ 211 (257)
...++.+ ... +.+...+++|||+ .+|+.+++
T Consensus 159 ~~~l~~~~~~~~~-~~~~~~~~~iGDs-~~D~~~lr 192 (192)
T PF12710_consen 159 AEALKELYIRDEE-DIDPDRVIAIGDS-INDLPMLR 192 (192)
T ss_dssp HHHHHHHHHHHHH-THTCCEEEEEESS-GGGHHHHH
T ss_pred HHHHHHHHHHhhc-CCCCCeEEEEECC-HHHHHHhC
Confidence 3455555 333 7788999999999 69998865
No 214
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=72.34 E-value=14 Score=29.93 Aligned_cols=71 Identities=21% Similarity=0.302 Sum_probs=45.2
Q ss_pred CcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHHHH---------HHHHHhcCCCCCCEEEEEcCHHH--HHHHHH
Q 025117 7 KRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAA---------AAYLKSIDFPKDKKVYVVGEDGI--LKELEL 75 (257)
Q Consensus 7 ~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~~~---------~~~l~~~~~~~~~~v~vlg~~~~--~~~l~~ 75 (257)
+++.++||+ .+....++|.++|+.---+.|++|...- ...+++.+.. ...++.+|-... ..-.+.
T Consensus 115 ~~l~ilTNg---~~~~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~-p~~~l~VgD~~~~di~gA~~ 190 (229)
T COG1011 115 YKLGILTNG---ARPHQERKLRQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVP-PEEALFVGDSLENDILGARA 190 (229)
T ss_pred ccEEEEeCC---ChHHHHHHHHHcCChhhhheEEEecccccCCCCcHHHHHHHHHcCCC-cceEEEECCChhhhhHHHHh
Confidence 559999996 3455667788999776678888877642 2222334443 346777775432 245577
Q ss_pred cCCeee
Q 025117 76 AGFQYL 81 (257)
Q Consensus 76 ~g~~~~ 81 (257)
.|++.+
T Consensus 191 ~G~~~v 196 (229)
T COG1011 191 LGMKTV 196 (229)
T ss_pred cCcEEE
Confidence 787754
No 215
>PLN02151 trehalose-phosphatase
Probab=72.26 E-value=9.5 Score=34.03 Aligned_cols=66 Identities=14% Similarity=0.142 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhCCCCC---cEEEEcCChhhHHHHHHHc-----CCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHH
Q 025117 179 TFMMDYLANKFGIQKS---QICMVGDRLDTDILFGQNG-----GCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFL 250 (257)
Q Consensus 179 p~~~~~~~~~~~~~~~---~~~~IGD~~~~Di~~A~~a-----G~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~ 250 (257)
-...+.+++.++..-. -.++|||+ .||--+=+.. | -+|.|..+. ....+.|.+++..|+.
T Consensus 271 G~Av~~Ll~~~~~~~~~~~~pvyiGDD-~TDEDaF~~L~~~~~G-~gI~Vg~~~----------k~T~A~y~L~dp~eV~ 338 (354)
T PLN02151 271 GKALEFLLESLGYANCTDVFPIYIGDD-RTDEDAFKILRDKKQG-LGILVSKYA----------KETNASYSLQEPDEVM 338 (354)
T ss_pred HHHHHHHHHhcccccCCCCeEEEEcCC-CcHHHHHHHHhhcCCC-ccEEeccCC----------CCCcceEeCCCHHHHH
Confidence 3566777777765422 28999999 5996553322 3 355554321 1146889999999998
Q ss_pred HHHHhh
Q 025117 251 SLKAAA 256 (257)
Q Consensus 251 ~~l~~~ 256 (257)
++|..+
T Consensus 339 ~~L~~L 344 (354)
T PLN02151 339 EFLERL 344 (354)
T ss_pred HHHHHH
Confidence 888754
No 216
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=71.45 E-value=23 Score=28.71 Aligned_cols=76 Identities=12% Similarity=0.127 Sum_probs=46.0
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCC-CceechH---------HHHHHHHHhcCCCCCCEEEEEc-CHHHH
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTE-EEIFASS---------FAAAAYLKSIDFPKDKKVYVVG-EDGIL 70 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~-~~i~ts~---------~~~~~~l~~~~~~~~~~v~vlg-~~~~~ 70 (257)
|+..++++.++||++ .+.+...|+.+|+.--- +.|+++. ......+++.+..+ ..+.++| +....
T Consensus 97 L~~L~~~~~ivTn~~---~~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p-~~~l~igDs~~di 172 (221)
T PRK10563 97 LESITVPMCVVSNGP---VSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNV-ENCILVDDSSAGA 172 (221)
T ss_pred HHHcCCCEEEEeCCc---HHHHHHHHHhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHHcCCCH-HHeEEEeCcHhhH
Confidence 455678999999953 34566678888986443 3455543 22333344445432 4566676 33445
Q ss_pred HHHHHcCCeee
Q 025117 71 KELELAGFQYL 81 (257)
Q Consensus 71 ~~l~~~g~~~~ 81 (257)
+..+.+|+..+
T Consensus 173 ~aA~~aG~~~i 183 (221)
T PRK10563 173 QSGIAAGMEVF 183 (221)
T ss_pred HHHHHCCCEEE
Confidence 56677888765
No 217
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=71.13 E-value=0.92 Score=39.21 Aligned_cols=76 Identities=7% Similarity=-0.009 Sum_probs=47.4
Q ss_pred CCccEEEEeccCCC---------CHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccc
Q 025117 103 KDVGAVVVGFDRYF---------NYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLV 173 (257)
Q Consensus 103 ~~~~aVv~~~d~~~---------~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~ 173 (257)
+.+..|+...|..+ .-+.+.+++..|++.+..++|+||+.+... ...+...|+..+|+.+....+. .
T Consensus 124 ~~~kvIvFDLDgTLi~~~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v-~~~L~~lGLd~YFdvIIs~Gdv---~ 199 (301)
T TIGR01684 124 EPPHVVVFDLDSTLITDEEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHV-VESMRKVKLDRYFDIIISGGHK---A 199 (301)
T ss_pred ccceEEEEecCCCCcCCCCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHH-HHHHHHcCCCcccCEEEECCcc---c
Confidence 34555666655432 246788999999874445789999887643 3355667777676555443333 3
Q ss_pred cCCCcHHHH
Q 025117 174 VGKPSTFMM 182 (257)
Q Consensus 174 ~gKP~p~~~ 182 (257)
-.||+|+..
T Consensus 200 ~~kp~~e~~ 208 (301)
T TIGR01684 200 EEYSTMSTE 208 (301)
T ss_pred cCCCCcccc
Confidence 478887644
No 218
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=70.35 E-value=22 Score=28.27 Aligned_cols=78 Identities=12% Similarity=0.062 Sum_probs=42.6
Q ss_pred ChhccCCcEEEEeCCCCcCHHHHHHHHHhCCCC---------CCCCceechHH-----HHHHHHH---hc---CCCCCCE
Q 025117 1 MLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT---------VTEEEIFASSF-----AAAAYLK---SI---DFPKDKK 60 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~---------~~~~~i~ts~~-----~~~~~l~---~~---~~~~~~~ 60 (257)
.|+++|.++.++||+. .++.....|..+|+. ---+.|+++.. .....++ +. +.. ...
T Consensus 56 ~Lk~~G~~l~I~Sn~~--~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~~~~~~gl~-p~e 132 (174)
T TIGR01685 56 TLKDAGTYLATASWND--VPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVNKVDPSVLK-PAQ 132 (174)
T ss_pred HHHHCCCEEEEEeCCC--ChHHHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhhhcccCCCC-HHH
Confidence 3788999999999962 223344456667764 11244443322 1112122 11 232 245
Q ss_pred EEEEc-CHHHHHHHHHcCCeee
Q 025117 61 VYVVG-EDGILKELELAGFQYL 81 (257)
Q Consensus 61 v~vlg-~~~~~~~l~~~g~~~~ 81 (257)
++++| +....+..+.+|+..+
T Consensus 133 ~l~VgDs~~di~aA~~aGi~~i 154 (174)
T TIGR01685 133 ILFFDDRTDNVREVWGYGVTSC 154 (174)
T ss_pred eEEEcChhHhHHHHHHhCCEEE
Confidence 67777 4555666677787665
No 219
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=69.74 E-value=13 Score=31.68 Aligned_cols=98 Identities=7% Similarity=-0.098 Sum_probs=48.9
Q ss_pred ccEEEEeccCCCCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcH--HHH
Q 025117 105 VGAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPST--FMM 182 (257)
Q Consensus 105 ~~aVv~~~d~~~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p--~~~ 182 (257)
+|.+++..+ -.++...++++.|++.+....++||....... .++..+.. .|... ...++-. ...
T Consensus 9 ~DGtl~~~~--~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~----------~~~~~l~~-~G~~~-~~~~i~ts~~~~ 74 (279)
T TIGR01452 9 CDGVLWLGE--RVVPGAPELLDRLARAGKAALFVTNNSTKSRA----------EYALKFAR-LGFNG-LAEQLFSSALCA 74 (279)
T ss_pred CCCceEcCC--eeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHH----------HHHHHHHH-cCCCC-ChhhEecHHHHH
Confidence 445554432 24566788899998744446678886542211 11222211 12211 0112211 223
Q ss_pred HHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEE
Q 025117 183 DYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTL 218 (257)
Q Consensus 183 ~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti 218 (257)
...+++......++++||+.- .....+..|+..+
T Consensus 75 ~~~l~~~~~~~~~v~~iG~~~--~~~~l~~~g~~~~ 108 (279)
T TIGR01452 75 ARLLRQPPDAPKAVYVIGEEG--LRAELDAAGIRLA 108 (279)
T ss_pred HHHHHhhCcCCCEEEEEcCHH--HHHHHHHCCCEEe
Confidence 334444333456799999863 2344567787744
No 220
>PRK05839 hypothetical protein; Provisional
Probab=69.02 E-value=57 Score=28.97 Aligned_cols=112 Identities=9% Similarity=-0.012 Sum_probs=55.6
Q ss_pred CcCHHHHHHHHHh-CCCCCCCCcee-chHHHHHHHH-HhcC-C-CCCCEEEEE--cCHHHHHHHHHcCCeeeCCCCCCCC
Q 025117 17 TKSRKQYGKKFET-LGLTVTEEEIF-ASSFAAAAYL-KSID-F-PKDKKVYVV--GEDGILKELELAGFQYLGGPEDGGK 89 (257)
Q Consensus 17 ~~~~~~~~~~L~~-~G~~~~~~~i~-ts~~~~~~~l-~~~~-~-~~~~~v~vl--g~~~~~~~l~~~g~~~~~~~~~~~~ 89 (257)
...++.+++.+++ .|+++++++|+ |+|...+-++ .+.- . ++++.|.+- +-......++..|.++..-+-+.+.
T Consensus 63 ~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~ 142 (374)
T PRK05839 63 ESLREAQRGFFKRRFKIELKENELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIASRAKVLLMPLTKEN 142 (374)
T ss_pred HHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHHhcCCEEEEeeccccc
Confidence 3455677777765 59999998875 6554433222 1211 1 234555553 2334567778888877653322111
Q ss_pred ccccCCCcccCCCCCccEEEEecc-----CCCCHHHHHHHHHHHHc
Q 025117 90 KIELKPGFLMEHDKDVGAVVVGFD-----RYFNYYKVQYGTLCIRE 130 (257)
Q Consensus 90 ~~~~~~~~~~~~~~~~~aVv~~~d-----~~~~~~~~~~~~~~l~~ 130 (257)
.+.+.... ..-+.+++|++..- ..++...+.+.++..++
T Consensus 143 ~~~~d~~~--~~~~~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~ 186 (374)
T PRK05839 143 DFTPSLNE--KELQEVDLVILNSPNNPTGRTLSLEELIEWVKLALK 186 (374)
T ss_pred CCcCCcch--hhhccccEEEEeCCCCCcCcccCHHHHHHHHHHHHH
Confidence 11110000 00124667776531 12455556655555543
No 221
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=68.90 E-value=4.4 Score=32.90 Aligned_cols=33 Identities=30% Similarity=0.351 Sum_probs=24.9
Q ss_pred CCCcHHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHH
Q 025117 175 GKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQN 212 (257)
Q Consensus 175 gKP~p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~ 212 (257)
||+ +.+....+ +.+-+.++||||. .+|+++-.-
T Consensus 159 gKa--~~i~~lrk--~~~~~~~~mvGDG-atDlea~~p 191 (227)
T KOG1615|consen 159 GKA--EVIALLRK--NYNYKTIVMVGDG-ATDLEAMPP 191 (227)
T ss_pred ccH--HHHHHHHh--CCChheeEEecCC-ccccccCCc
Confidence 454 56666655 7778899999999 799986544
No 222
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=68.87 E-value=5.1 Score=31.72 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=21.7
Q ss_pred hhccCC--cEEEEeCCCCcCH---HHHHHHHH-hCCCCC
Q 025117 2 LRSKGK--RLVFVTNNSTKSR---KQYGKKFE-TLGLTV 34 (257)
Q Consensus 2 L~~~g~--~~~~lTN~s~~~~---~~~~~~L~-~~G~~~ 34 (257)
+++.+. +++++|||++.+. ..-++.++ .+|+++
T Consensus 71 l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpv 109 (168)
T PF09419_consen 71 LKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIPV 109 (168)
T ss_pred HHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCcE
Confidence 455443 6999999865442 45566665 589874
No 223
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=68.15 E-value=4 Score=34.01 Aligned_cols=49 Identities=20% Similarity=0.318 Sum_probs=38.1
Q ss_pred HHHHHhCCCC-CCCCceechHHHHHHHHHhcCCCCCCEEEEEcCHHHHHHHHHc
Q 025117 24 GKKFETLGLT-VTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDGILKELELA 76 (257)
Q Consensus 24 ~~~L~~~G~~-~~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~~~~~~~l~~~ 76 (257)
++.|+.+|++ +++.+|+|+....-+.-+ +.+ ...||.|...+-+.|+..
T Consensus 92 A~iLealgVD~IDESEVLTPAD~~~Hi~K-~~F---tVPFVcGarnLgEAlRRI 141 (296)
T COG0214 92 AQILEALGVDMIDESEVLTPADEEFHINK-WKF---TVPFVCGARNLGEALRRI 141 (296)
T ss_pred HHHHHHhCCCccccccccCCCchhhhcch-hhc---ccceecCcCcHHHHHHHH
Confidence 4668999999 899999999987655333 344 457999999998888774
No 224
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=66.64 E-value=12 Score=33.41 Aligned_cols=78 Identities=17% Similarity=0.157 Sum_probs=52.7
Q ss_pred eEEEecCCCccccCCCcccccCchHH--HHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHH
Q 025117 135 LFIATNRDAVTHLTDAQEWAGGGSMV--GAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQN 212 (257)
Q Consensus 135 ~~i~tn~d~~~~~~~~~~~~~~g~~~--~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~ 212 (257)
-+++||.... +.-....+.|+|.+| +-|+.++ .+|| ...|+.+.+++|- +-.-+.|||. .---.+|++
T Consensus 373 nVlvTttqLi-palaKvLL~gLg~~fpiENIYSa~-----kiGK--escFerI~~RFg~-K~~yvvIgdG-~eee~aAK~ 442 (468)
T KOG3107|consen 373 NVLVTTTQLI-PALAKVLLYGLGSSFPIENIYSAT-----KIGK--ESCFERIQSRFGR-KVVYVVIGDG-VEEEQAAKA 442 (468)
T ss_pred EEEEeccchh-HHHHHHHHHhcCCcccchhhhhhh-----hccH--HHHHHHHHHHhCC-ceEEEEecCc-HHHHHHHHh
Confidence 4666776653 322233456777665 3343332 2355 4789999999996 5678899999 466779999
Q ss_pred cCCeEEEEcc
Q 025117 213 GGCKTLLVLS 222 (257)
Q Consensus 213 aG~~ti~V~~ 222 (257)
..|...-+..
T Consensus 443 ln~PfwrI~~ 452 (468)
T KOG3107|consen 443 LNMPFWRISS 452 (468)
T ss_pred hCCceEeecc
Confidence 9998876654
No 225
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=64.47 E-value=31 Score=31.80 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=45.2
Q ss_pred ChhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechH--------HHHHHHHHhcCCCCCCEEEEEc-CHHHHH
Q 025117 1 MLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASS--------FAAAAYLKSIDFPKDKKVYVVG-EDGILK 71 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~--------~~~~~~l~~~~~~~~~~v~vlg-~~~~~~ 71 (257)
+|++.|+++.++||++ .+...+.|+.+|+.---+.|+++. ......+++. .+ +.++++| +....+
T Consensus 341 ~Lk~~g~~l~IvS~~~---~~~~~~~l~~~~l~~~f~~i~~~d~v~~~~kP~~~~~al~~l--~~-~~~v~VGDs~~Di~ 414 (459)
T PRK06698 341 YIKENNCSIYIASNGL---TEYLRAIVSYYDLDQWVTETFSIEQINSLNKSDLVKSILNKY--DI-KEAAVVGDRLSDIN 414 (459)
T ss_pred HHHHCCCeEEEEeCCc---hHHHHHHHHHCCcHhhcceeEecCCCCCCCCcHHHHHHHHhc--Cc-ceEEEEeCCHHHHH
Confidence 3778999999999944 445556677788752223333322 1222333332 22 5688888 444566
Q ss_pred HHHHcCCeeeC
Q 025117 72 ELELAGFQYLG 82 (257)
Q Consensus 72 ~l~~~g~~~~~ 82 (257)
..+.+|+....
T Consensus 415 aAk~AG~~~I~ 425 (459)
T PRK06698 415 AAKDNGLIAIG 425 (459)
T ss_pred HHHHCCCeEEE
Confidence 67888987653
No 226
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=64.13 E-value=1.1e+02 Score=27.50 Aligned_cols=63 Identities=16% Similarity=0.181 Sum_probs=37.9
Q ss_pred CCcCHHHHHHHH-HhCCCCCCCCcee-chHHHHHH-HHHhcCCCCCCEEEEEcCH--HHHHHHHHcCCe
Q 025117 16 STKSRKQYGKKF-ETLGLTVTEEEIF-ASSFAAAA-YLKSIDFPKDKKVYVVGED--GILKELELAGFQ 79 (257)
Q Consensus 16 s~~~~~~~~~~L-~~~G~~~~~~~i~-ts~~~~~~-~l~~~~~~~~~~v~vlg~~--~~~~~l~~~g~~ 79 (257)
...-++.+++.+ +..|+++++++|+ |+|...+- .+.. -..++.+|.+.... .....++..|.+
T Consensus 78 ~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~l~~-~~~~gd~V~v~~P~Y~~~~~~~~~~g~~ 145 (409)
T PRK07590 78 YDFLREKIAENDYQARGCDISADEIFISDGAKCDTGNILD-IFGPDNTIAVTDPVYPVYVDTNVMAGRT 145 (409)
T ss_pred CHHHHHHHHHHHHHhcCCcCChhhEEECCCHHHHHHHHHH-hcCCCCEEEEeCCCCcchHHHHHHcCCc
Confidence 334567777775 4579999999975 55543322 2322 23456777775543 456667777864
No 227
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=63.81 E-value=46 Score=25.30 Aligned_cols=77 Identities=10% Similarity=0.148 Sum_probs=50.2
Q ss_pred ChhccCCcEEEEeCCCCcCHHHHHHHHHhCCCC-CCCCceechHH----HHHHHHHhcCCCCCCEEEEEcCH------H-
Q 025117 1 MLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT-VTEEEIFASSF----AAAAYLKSIDFPKDKKVYVVGED------G- 68 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~-~~~~~i~ts~~----~~~~~l~~~~~~~~~~v~vlg~~------~- 68 (257)
.|+++|..|+.+- ...+++++.+...+.+-+ +.....+|++. -+.+.|++.+.. ...+++|.. .
T Consensus 24 ~l~~~GfeVi~LG--~~v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~--~~~vivGG~~vi~~~d~ 99 (134)
T TIGR01501 24 AFTNAGFNVVNLG--VLSPQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLE--GILLYVGGNLVVGKQDF 99 (134)
T ss_pred HHHHCCCEEEECC--CCCCHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCC--CCEEEecCCcCcChhhh
Confidence 3788999988776 457889999999888777 34455555555 245556665542 344566662 2
Q ss_pred --HHHHHHHcCCeee
Q 025117 69 --ILKELELAGFQYL 81 (257)
Q Consensus 69 --~~~~l~~~g~~~~ 81 (257)
.++.|++.|+..+
T Consensus 100 ~~~~~~l~~~Gv~~v 114 (134)
T TIGR01501 100 PDVEKRFKEMGFDRV 114 (134)
T ss_pred HHHHHHHHHcCCCEE
Confidence 2346889997644
No 228
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=63.73 E-value=36 Score=35.10 Aligned_cols=78 Identities=15% Similarity=0.246 Sum_probs=48.5
Q ss_pred ChhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCC-CCCceechHH---------HHHHHHHhcCCCCCCEEEEEc-CHHH
Q 025117 1 MLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTV-TEEEIFASSF---------AAAAYLKSIDFPKDKKVYVVG-EDGI 69 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~-~~~~i~ts~~---------~~~~~l~~~~~~~~~~v~vlg-~~~~ 69 (257)
+|+++|+++.++||+ .++.+...|+++|+.. -.+.|+++.. .....+++.+..+ ..++++| +...
T Consensus 172 ~Lk~~G~~l~IvSn~---~~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p-~e~v~IgDs~~D 247 (1057)
T PLN02919 172 QCKNKGLKVAVASSA---DRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILGVPT-SECVVIEDALAG 247 (1057)
T ss_pred HHHhCCCeEEEEeCC---cHHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcCcCc-ccEEEEcCCHHH
Confidence 378899999999994 4455556688888862 2345554432 2233334445433 4466666 4455
Q ss_pred HHHHHHcCCeeeC
Q 025117 70 LKELELAGFQYLG 82 (257)
Q Consensus 70 ~~~l~~~g~~~~~ 82 (257)
.+..+.+|+..+.
T Consensus 248 i~AA~~aGm~~I~ 260 (1057)
T PLN02919 248 VQAARAAGMRCIA 260 (1057)
T ss_pred HHHHHHcCCEEEE
Confidence 6777888987664
No 229
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=63.47 E-value=32 Score=28.43 Aligned_cols=72 Identities=28% Similarity=0.417 Sum_probs=46.0
Q ss_pred hhccCCcEEEEeCCCCcCH-----HHHHHHHHhCCCCCCCCceech-HHHHHHHHHhcCCCCCCEEEEEcCHH--HHHHH
Q 025117 2 LRSKGKRLVFVTNNSTKSR-----KQYGKKFETLGLTVTEEEIFAS-SFAAAAYLKSIDFPKDKKVYVVGEDG--ILKEL 73 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~-----~~~~~~L~~~G~~~~~~~i~ts-~~~~~~~l~~~~~~~~~~v~vlg~~~--~~~~l 73 (257)
|+..++++.|+--.|..+. +...+.|+++|+.+..=++.++ ......+|.+. .-+||=|.+- +.+++
T Consensus 28 l~g~~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~-----d~IyVgGGNTF~LL~~l 102 (224)
T COG3340 28 LQGKRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPPLAAIENKLMKA-----DIIYVGGGNTFNLLQEL 102 (224)
T ss_pred hcCCCceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCCHHHHHHhhhhc-----cEEEECCchHHHHHHHH
Confidence 4445679999977554433 2345567789999876555544 44566666543 3466666653 67778
Q ss_pred HHcCC
Q 025117 74 ELAGF 78 (257)
Q Consensus 74 ~~~g~ 78 (257)
++.|.
T Consensus 103 ke~gl 107 (224)
T COG3340 103 KETGL 107 (224)
T ss_pred HHhCc
Confidence 88774
No 230
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=62.91 E-value=9.4 Score=33.13 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=31.1
Q ss_pred ChhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHHH
Q 025117 1 MLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFA 45 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~~ 45 (257)
.|+++|.++.+.||+ +++...+.|+++|++---+-|++++..
T Consensus 157 ~LkekGikLaIaTS~---~Re~v~~~L~~lGLd~YFdvIIs~Gdv 198 (301)
T TIGR01684 157 ELKKRGCILVLWSYG---DRDHVVESMRKVKLDRYFDIIISGGHK 198 (301)
T ss_pred HHHHCCCEEEEEECC---CHHHHHHHHHHcCCCcccCEEEECCcc
Confidence 378899999999994 344556789999998544667766665
No 231
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=62.67 E-value=6.5 Score=32.24 Aligned_cols=49 Identities=20% Similarity=0.331 Sum_probs=38.4
Q ss_pred HHHHHhCCCC-CCCCceechHHHHHHHHHhcCCCCCCEEEEEcCHHHHHHHHHc
Q 025117 24 GKKFETLGLT-VTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDGILKELELA 76 (257)
Q Consensus 24 ~~~L~~~G~~-~~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~~~~~~~l~~~ 76 (257)
++-|+.+|++ +++.+|+|+..-. +++.++++ +..|+.|...+-+.|+..
T Consensus 93 AQIlE~l~vDYiDESEvlt~AD~~-hhI~KhnF---kvPFvCG~rdlGEALRRI 142 (296)
T KOG1606|consen 93 AQILEALGVDYIDESEVLTPADWD-HHIEKHNF---KVPFVCGCRDLGEALRRI 142 (296)
T ss_pred HHHHHHhccCccchhhhccccccc-chhhhhcC---cCceeeccccHHHHHHHH
Confidence 4568889998 8999999988755 45666665 567999999888888763
No 232
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=62.28 E-value=9.8 Score=32.60 Aligned_cols=33 Identities=15% Similarity=0.297 Sum_probs=28.5
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCC
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTV 34 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~ 34 (257)
|++.|.+++||||-+...++.-.+-|.+.|++.
T Consensus 157 l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~ 189 (275)
T TIGR01680 157 LVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHT 189 (275)
T ss_pred HHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCC
Confidence 678899999999988777778888899999984
No 233
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=62.25 E-value=5.5 Score=33.20 Aligned_cols=70 Identities=24% Similarity=0.385 Sum_probs=43.5
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHHHHHHHHHhcCCCCCCEEEEEcCHHHHHHHHHcCCeee
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDGILKELELAGFQYL 81 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~~~~~~~l~~~g~~~~ 81 (257)
++++|..|+|+||-+...++.-.+-|.+.|++-- ++++ |+..+.. .+.-....-...+..+.+.|++++
T Consensus 127 ~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~~-~~l~---------lr~~~~~-~~~~~~~yK~~~r~~i~~~Gy~Ii 195 (229)
T PF03767_consen 127 ARSRGVKVFFITGRPESQREATEKNLKKAGFPGW-DHLI---------LRPDKDP-SKKSAVEYKSERRKEIEKKGYRII 195 (229)
T ss_dssp HHHTTEEEEEEEEEETTCHHHHHHHHHHHTTSTB-SCGE---------EEEESST-SS------SHHHHHHHHHTTEEEE
T ss_pred HHHCCCeEEEEecCCchhHHHHHHHHHHcCCCcc-chhc---------ccccccc-ccccccccchHHHHHHHHcCCcEE
Confidence 5789999999999888888888999999998732 3333 2211110 011112224456677777777765
Q ss_pred C
Q 025117 82 G 82 (257)
Q Consensus 82 ~ 82 (257)
.
T Consensus 196 ~ 196 (229)
T PF03767_consen 196 A 196 (229)
T ss_dssp E
T ss_pred E
Confidence 3
No 234
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=61.70 E-value=21 Score=26.52 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=12.6
Q ss_pred hhccCCcEEEEeCC
Q 025117 2 LRSKGKRLVFVTNN 15 (257)
Q Consensus 2 L~~~g~~~~~lTN~ 15 (257)
|+++|+++.++||+
T Consensus 41 Lk~~g~~l~i~Sn~ 54 (128)
T TIGR01681 41 LKKNGFLLALASYN 54 (128)
T ss_pred HHHCCeEEEEEeCC
Confidence 67889999999996
No 235
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=61.36 E-value=25 Score=29.67 Aligned_cols=38 Identities=18% Similarity=0.460 Sum_probs=29.7
Q ss_pred hccCCcEEEEeCCCCcC-HHHHHHHHHhCCCC-CCCCcee
Q 025117 3 RSKGKRLVFVTNNSTKS-RKQYGKKFETLGLT-VTEEEIF 40 (257)
Q Consensus 3 ~~~g~~~~~lTN~s~~~-~~~~~~~L~~~G~~-~~~~~i~ 40 (257)
.++|..++|+||-.... -+.-.+-|.+.||+ +.++.++
T Consensus 135 n~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~~~~~~l 174 (274)
T COG2503 135 NSNGGKIFYISNRDQENEKDGTIENLKSEGLPQVLESHLL 174 (274)
T ss_pred HhcCcEEEEEeccchhcccchhHHHHHHcCcccccccceE
Confidence 36799999999977666 46678889999999 4556665
No 236
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=60.32 E-value=75 Score=27.23 Aligned_cols=39 Identities=8% Similarity=-0.038 Sum_probs=26.2
Q ss_pred ccEEEEeccCCCCHHHHHHHHHHHHcCCCceEEEecCCCcc
Q 025117 105 VGAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVT 145 (257)
Q Consensus 105 ~~aVv~~~d~~~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~ 145 (257)
+|.|+.- ..-.++...++++.|++++...+++||.....
T Consensus 15 lDGvl~~--G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s 53 (269)
T COG0647 15 LDGVLYR--GNEAIPGAAEALKRLKAAGKPVIFLTNNSTRS 53 (269)
T ss_pred CcCceEe--CCccCchHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 4455543 23456777889999987555566779987754
No 237
>TIGR00035 asp_race aspartate racemase.
Probab=58.15 E-value=88 Score=25.80 Aligned_cols=70 Identities=17% Similarity=0.364 Sum_probs=47.9
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHh-CCCCCCCCceechHHHHHHHHHhcCCCCCCEEEEEcCHH------HHHHHH
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFET-LGLTVTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDG------ILKELE 74 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~-~G~~~~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~~~------~~~~l~ 74 (257)
|.+.|..++++.-|| .+.+.+++++ .+++ |++-..+++..+++.+ .++|.++|+.. ..+.|+
T Consensus 71 L~~~g~d~iviaCNT---ah~~~~~l~~~~~iP-----ii~i~~~~~~~~~~~~---~~~VgvLaT~~T~~s~~y~~~l~ 139 (229)
T TIGR00035 71 LENAGADFIIMPCNT---AHKFAEDIQKAIGIP-----LISMIEETAEAVKEDG---VKKAGLLGTKGTMKDGVYEREMK 139 (229)
T ss_pred HHHcCCCEEEECCcc---HHHHHHHHHHhCCCC-----EechHHHHHHHHHHcC---CCEEEEEecHHHHHhHHHHHHHH
Confidence 567888888887766 3444566765 4443 5665677777776543 37899998874 467778
Q ss_pred HcCCeeeC
Q 025117 75 LAGFQYLG 82 (257)
Q Consensus 75 ~~g~~~~~ 82 (257)
+.|+.++.
T Consensus 140 ~~g~~v~~ 147 (229)
T TIGR00035 140 KHGIEIVT 147 (229)
T ss_pred HCCCEEEC
Confidence 88988764
No 238
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=58.12 E-value=7.3 Score=31.38 Aligned_cols=61 Identities=10% Similarity=-0.004 Sum_probs=38.1
Q ss_pred HHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcC-CCCCCCCcEEECChhhHHHHHHh
Q 025117 186 ANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQS-PNNSIQPDFYTNKISDFLSLKAA 255 (257)
Q Consensus 186 ~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~-~~~~~~pd~~~~~l~el~~~l~~ 255 (257)
+..+.-+++.++|+||+ .+|+.+|+....-. ... ++-+ ......+-.-++++.|++.-+++
T Consensus 152 I~~l~e~~e~~fy~GDs-vsDlsaaklsDllF--AK~------~L~nyc~eqn~~f~~fe~F~eIlk~iek 213 (220)
T COG4359 152 IHELSEPNESIFYCGDS-VSDLSAAKLSDLLF--AKD------DLLNYCREQNLNFLEFETFYEILKEIEK 213 (220)
T ss_pred HHHhhcCCceEEEecCC-cccccHhhhhhhHh--hHH------HHHHHHHHcCCCCcccccHHHHHHHHHH
Confidence 34455567889999999 69999999876421 111 1110 01123556668888888776654
No 239
>PLN02423 phosphomannomutase
Probab=57.43 E-value=14 Score=31.00 Aligned_cols=37 Identities=19% Similarity=0.115 Sum_probs=29.6
Q ss_pred HHHHHhCCCCCcEEEEcC----ChhhHHHHHHHcCCeEEEEcc
Q 025117 184 YLANKFGIQKSQICMVGD----RLDTDILFGQNGGCKTLLVLS 222 (257)
Q Consensus 184 ~~~~~~~~~~~~~~~IGD----~~~~Di~~A~~aG~~ti~V~~ 222 (257)
.+++.+. ++++++.+|| . ..|+++=+.-|+.++-|..
T Consensus 192 ~al~~L~-~~~e~~aFGD~~~~~-~ND~eMl~~~~~~~~~~~~ 232 (245)
T PLN02423 192 YCLQFLE-DFDEIHFFGDKTYEG-GNDHEIFESERTIGHTVTS 232 (245)
T ss_pred HHHHHhc-CcCeEEEEeccCCCC-CCcHHHHhCCCcceEEeCC
Confidence 3444444 8999999999 6 5999998888988888864
No 240
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=56.77 E-value=8.1 Score=33.55 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=33.1
Q ss_pred ChhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHHHHHHH
Q 025117 1 MLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAY 49 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~~~~~~ 49 (257)
+|+++|.++.++||++ ++.....|+.+|++---+-|++++....++
T Consensus 159 eLkekGikLaIvTNg~---Re~v~~~Le~lgL~~yFDvII~~g~i~~k~ 204 (303)
T PHA03398 159 ELKERGCVLVLWSYGN---REHVVHSLKETKLEGYFDIIICGGRKAGEY 204 (303)
T ss_pred HHHHCCCEEEEEcCCC---hHHHHHHHHHcCCCccccEEEECCCccccc
Confidence 3788999999999954 445577788899974445677766665555
No 241
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=56.57 E-value=3.1 Score=33.16 Aligned_cols=49 Identities=20% Similarity=0.379 Sum_probs=31.1
Q ss_pred HHHHHhCCCC-CCCCceechHHHHHHHHHhcCCCCCCEEEEEcCHHHHHHHHHc
Q 025117 24 GKKFETLGLT-VTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDGILKELELA 76 (257)
Q Consensus 24 ~~~L~~~G~~-~~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~~~~~~~l~~~ 76 (257)
++-|+.+|++ +++.+|+|+..-.- ++.++.+ +..||.|...+-+.|+..
T Consensus 86 AqiLealgVD~IDESEVLTpAD~~~-HI~K~~F---~vPFVcGarnLGEALRRI 135 (208)
T PF01680_consen 86 AQILEALGVDYIDESEVLTPADEEN-HIDKHNF---KVPFVCGARNLGEALRRI 135 (208)
T ss_dssp HHHHHHTT-SEEEEETTS--S-SS-----GGG----SS-EEEEESSHHHHHHHH
T ss_pred hhhHHHhCCceeccccccccccccc-cccchhC---CCCeEecCCCHHHHHhhH
Confidence 5668999999 89999999887553 4544544 567999998888888764
No 242
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=55.84 E-value=33 Score=28.77 Aligned_cols=77 Identities=10% Similarity=0.144 Sum_probs=49.9
Q ss_pred HHHHHHHHHHh---CCCCCcEEEEcCChhhHHHHHHHcCC-eEEEEccCCCChhhhcCCCCCCCCc-EEECChhhHHHHH
Q 025117 179 TFMMDYLANKF---GIQKSQICMVGDRLDTDILFGQNGGC-KTLLVLSGVTSLSMLQSPNNSIQPD-FYTNKISDFLSLK 253 (257)
Q Consensus 179 p~~~~~~~~~~---~~~~~~~~~IGD~~~~Di~~A~~aG~-~ti~V~~G~~~~~~~~~~~~~~~pd-~~~~~l~el~~~l 253 (257)
-.+++..++.. |+.-+++++|||. ..|+=.+.+.+- +.++.+.|+.=...+.+.....++. ....+=.||.+.|
T Consensus 152 ~~il~~~~~~~~~~g~~~~rviYiGDG-~nD~Cp~~~L~~~D~v~~R~~~~l~~~i~~~~~~~~a~v~~W~~g~~i~~~l 230 (234)
T PF06888_consen 152 GKILERLLQEQAQRGVPYDRVIYIGDG-RNDFCPALRLRPRDVVFPRKGYPLHKLIQKNPGEVKAEVVPWSSGEEILEIL 230 (234)
T ss_pred HHHHHHHHHHHhhcCCCcceEEEECCC-CCCcCcccccCCCCEEecCCCChHHHHHhcCCCcceeEEEecCCHHHHHHHH
Confidence 45666666553 6777999999999 799999988765 4677787754333333211112222 2356778888887
Q ss_pred Hhh
Q 025117 254 AAA 256 (257)
Q Consensus 254 ~~~ 256 (257)
++.
T Consensus 231 ~~~ 233 (234)
T PF06888_consen 231 LQL 233 (234)
T ss_pred Hhh
Confidence 765
No 243
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=55.39 E-value=48 Score=27.80 Aligned_cols=40 Identities=25% Similarity=0.312 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeE-EEE
Q 025117 179 TFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKT-LLV 220 (257)
Q Consensus 179 p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~t-i~V 220 (257)
..+.+-.++.-+.+ ..+++||||+ ||+.+-+.+.-+. +.|
T Consensus 193 a~i~e~~~ele~~d-~sa~~VGDSI-tDv~ml~~~rgrGglAv 233 (315)
T COG4030 193 AKIMEGYCELEGID-FSAVVVGDSI-TDVKMLEAARGRGGLAV 233 (315)
T ss_pred hHHHHHHHhhcCCC-cceeEecCcc-cchHHHHHhhccCceEE
Confidence 45566666544544 4499999995 9998776654433 444
No 244
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=54.72 E-value=1.3e+02 Score=25.50 Aligned_cols=36 Identities=22% Similarity=0.457 Sum_probs=25.1
Q ss_pred chHHHHHHHHHhcCCCCCCE-EEEEcCH-----------HHHHHHHHcCCe
Q 025117 41 ASSFAAAAYLKSIDFPKDKK-VYVVGED-----------GILKELELAGFQ 79 (257)
Q Consensus 41 ts~~~~~~~l~~~~~~~~~~-v~vlg~~-----------~~~~~l~~~g~~ 79 (257)
.++..+.+||.+.++ ++ +.+++.+ ++++.++++|+.
T Consensus 104 ~a~~~a~~~Li~~Gh---~~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl~ 151 (279)
T PF00532_consen 104 EAGYEATEYLIKKGH---RRPIAFIGGPEDSSTSRERLQGYRDALKEAGLP 151 (279)
T ss_dssp HHHHHHHHHHHHTTC---CSTEEEEEESTTTHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhccc---CCeEEEEecCcchHHHHHHHHHHHHHHHHcCCC
Confidence 456678888887765 56 6666652 467888888873
No 245
>PLN02811 hydrolase
Probab=54.37 E-value=72 Score=25.91 Aligned_cols=77 Identities=16% Similarity=0.146 Sum_probs=39.9
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHh-CCCCCCCCceechH--H---------HHHHHHHhcC---CCCCCEEEEEc-
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFET-LGLTVTEEEIFASS--F---------AAAAYLKSID---FPKDKKVYVVG- 65 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~-~G~~~~~~~i~ts~--~---------~~~~~l~~~~---~~~~~~v~vlg- 65 (257)
|++.|+++.++||++... +..++.+ .|+.--.+.|+++. . .....+++.+ .. .+.++++|
T Consensus 90 L~~~g~~~~i~S~~~~~~---~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~-~~~~v~IgD 165 (220)
T PLN02811 90 LHAKGIPIAIATGSHKRH---FDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPVD-PGKVLVFED 165 (220)
T ss_pred HHHCCCcEEEEeCCchhh---HHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCCC-ccceEEEec
Confidence 778999999999965432 2222322 23321123344433 1 1223333332 32 24566666
Q ss_pred CHHHHHHHHHcCCeeeC
Q 025117 66 EDGILKELELAGFQYLG 82 (257)
Q Consensus 66 ~~~~~~~l~~~g~~~~~ 82 (257)
+....+..+.+|+..+.
T Consensus 166 s~~di~aA~~aG~~~i~ 182 (220)
T PLN02811 166 APSGVEAAKNAGMSVVM 182 (220)
T ss_pred cHhhHHHHHHCCCeEEE
Confidence 44556666778876653
No 246
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=54.30 E-value=27 Score=23.73 Aligned_cols=47 Identities=19% Similarity=0.108 Sum_probs=38.0
Q ss_pred CCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHHHHHHHHHhc
Q 025117 6 GKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSI 53 (257)
Q Consensus 6 g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~~~~~~l~~~ 53 (257)
.||.+|-||-.+.+... .+.|++++++-+.=+|.+|..-..++|+-+
T Consensus 2 skp~lfgsn~Cpdca~a-~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lR 48 (85)
T COG4545 2 SKPKLFGSNLCPDCAPA-VEYLERLNVDYDFVEITESMANLKRFLHLR 48 (85)
T ss_pred CCceeeccccCcchHHH-HHHHHHcCCCceeeehhhhhhhHHHHHhhh
Confidence 47899999977777644 456999999998889988888888888644
No 247
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=53.80 E-value=61 Score=27.15 Aligned_cols=74 Identities=14% Similarity=0.173 Sum_probs=45.4
Q ss_pred cCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCc--------------------------eechHHHHHHHHHhcCC---
Q 025117 5 KGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEE--------------------------IFASSFAAAAYLKSIDF--- 55 (257)
Q Consensus 5 ~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~--------------------------i~ts~~~~~~~l~~~~~--- 55 (257)
.|++++++.-+ ..++.+.+.|++.|+.+..-. +|||+..+..+++..+-
T Consensus 129 ~~~~vLi~rg~--~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~~~d~v~ftS~~~~~~~~~~~~~~~~ 206 (255)
T PRK05752 129 PDPRVLIMRGE--GGRELLAERLREQGASVDYLELYRRCLPDYPAGTLLQRVEAERLNGLVVSSGQGFEHLQQLAGADWP 206 (255)
T ss_pred CCCEEEEEccC--ccHHHHHHHHHHCCCEEeEEEEEeecCCCCCHHHHHHHHHhCCCCEEEECCHHHHHHHHHHhChhHH
Confidence 57788888854 456689999999997542211 45777777666543210
Q ss_pred -CCCCEEEEEcCHHHHHHHHHcCCeee
Q 025117 56 -PKDKKVYVVGEDGILKELELAGFQYL 81 (257)
Q Consensus 56 -~~~~~v~vlg~~~~~~~l~~~g~~~~ 81 (257)
....+++++ ++...+.+++.|+...
T Consensus 207 ~~~~~~~~~i-g~~ta~a~~~~G~~~~ 232 (255)
T PRK05752 207 ELARLPLFVP-SPRVAEQARAAGAQTV 232 (255)
T ss_pred HhcCceEEEe-CHHHHHHHHHcCCCce
Confidence 112345555 4466667778887543
No 248
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=53.53 E-value=1.4e+02 Score=26.52 Aligned_cols=65 Identities=17% Similarity=0.132 Sum_probs=38.4
Q ss_pred cCHHHHHHHHHh-CCCCCCCC-cee-chHHHHHHHH-HhcCCCCCCEEEEEcCH--HHHHHHHHcCCeeeC
Q 025117 18 KSRKQYGKKFET-LGLTVTEE-EIF-ASSFAAAAYL-KSIDFPKDKKVYVVGED--GILKELELAGFQYLG 82 (257)
Q Consensus 18 ~~~~~~~~~L~~-~G~~~~~~-~i~-ts~~~~~~~l-~~~~~~~~~~v~vlg~~--~~~~~l~~~g~~~~~ 82 (257)
.-++.+++.+.+ .|++++++ +|+ |+|..-+-++ ...-..+|.+|.+.... .....++..|.++..
T Consensus 72 ~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~ 142 (388)
T PRK07366 72 DFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSHAGGVYLAGGQIYP 142 (388)
T ss_pred HHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEE
Confidence 445667777754 59999887 576 6555333322 22112356677665432 456667778877654
No 249
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=52.61 E-value=63 Score=26.70 Aligned_cols=70 Identities=21% Similarity=0.178 Sum_probs=41.9
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHH---------HHHHHHHhcCCCCCCEEEEEcCH--HHH
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSF---------AAAAYLKSIDFPKDKKVYVVGED--GIL 70 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~---------~~~~~l~~~~~~~~~~v~vlg~~--~~~ 70 (257)
|++ +.++.++||++.. ++..|+.---+.|+++.. .....+++.+.. ...++++|-. ...
T Consensus 125 L~~-~~~l~i~Tn~~~~--------~~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~-~~~~~~VGD~~~~Di 194 (238)
T PRK10748 125 LAK-KWPLVAITNGNAQ--------PELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEKLNVP-IGEILHVGDDLTTDV 194 (238)
T ss_pred HHc-CCCEEEEECCCch--------HHHCCcHHhhceeEecccCCcCCCcHHHHHHHHHHcCCC-hhHEEEEcCCcHHHH
Confidence 554 4889999997653 456777533345555432 222223444543 3457888854 456
Q ss_pred HHHHHcCCeee
Q 025117 71 KELELAGFQYL 81 (257)
Q Consensus 71 ~~l~~~g~~~~ 81 (257)
...+.+|++.+
T Consensus 195 ~~A~~aG~~~i 205 (238)
T PRK10748 195 AGAIRCGMQAC 205 (238)
T ss_pred HHHHHCCCeEE
Confidence 66788898765
No 250
>TIGR01508 rib_reduct_arch 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase, archaeal. in riboflavin biosynthesis is reduced first, and then deaminated, in both Archaea and Fungi, opposite the order in Bacteria. The subsequent deaminase is not presently known and is not closely homologous to the deaminase domain (3.5.4.26) fused to the reductase domain (1.1.1.193) similar to this protein but found in most bacteria.
Probab=52.55 E-value=83 Score=25.62 Aligned_cols=66 Identities=14% Similarity=0.176 Sum_probs=41.0
Q ss_pred CcEEEEeCCCCcCHHHHHHHHHhCCCCCC--CCceechHHHHHHHHHhcCCCCCCEEEEEcCHHHHHHHHHcCC
Q 025117 7 KRLVFVTNNSTKSRKQYGKKFETLGLTVT--EEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDGILKELELAGF 78 (257)
Q Consensus 7 ~~~~~lTN~s~~~~~~~~~~L~~~G~~~~--~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~~~~~~~l~~~g~ 78 (257)
.+++++|.+. ...+..++|++.|+.+- .++-+... .+...|++.+. +++++-|+..+...|-+.|+
T Consensus 90 ~~~~v~t~~~--~~~~~~~~l~~~gv~vi~~~~~~~dl~-~~l~~L~~~g~---~~vlveGG~~l~~~fl~~~L 157 (210)
T TIGR01508 90 AKTIIATSED--EPEEKVEELEDKGVEVVKFGEGRVDLK-KLLDILYDKGV---RRLMVEGGGTLIWSLFKENL 157 (210)
T ss_pred CCEEEEEcCC--CCHHHHHHHHHCCCEEEEeCCCCcCHH-HHHHHHHHCCC---CEEEEeeCHHHHHHHHHCCC
Confidence 3666666422 22355677888888742 12212222 34445665543 78999999999999988774
No 251
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=52.36 E-value=56 Score=28.04 Aligned_cols=77 Identities=16% Similarity=0.124 Sum_probs=41.6
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCC-CCC-CCCceechH---------HHHHHHHHhcCCCCCCEEEEEc-CHHH
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLG-LTV-TEEEIFASS---------FAAAAYLKSIDFPKDKKVYVVG-EDGI 69 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G-~~~-~~~~i~ts~---------~~~~~~l~~~~~~~~~~v~vlg-~~~~ 69 (257)
|++.|+++.++||++. +.+...|+.++ ... ...+++++. ......+++.+..+ ..++++| +...
T Consensus 156 L~~~g~~l~IvTn~~~---~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p-~~~l~IGDs~~D 231 (286)
T PLN02779 156 ALAAGIKVAVCSTSNE---KAVSKIVNTLLGPERAQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDP-SRCVVVEDSVIG 231 (286)
T ss_pred HHHCCCeEEEEeCCCH---HHHHHHHHHhccccccCceEEEeccccCCCCCCHHHHHHHHHHhCcCh-HHEEEEeCCHHh
Confidence 6788999999999543 33334444432 111 112233221 12233334445433 4577777 4455
Q ss_pred HHHHHHcCCeeeC
Q 025117 70 LKELELAGFQYLG 82 (257)
Q Consensus 70 ~~~l~~~g~~~~~ 82 (257)
.+..+.+|+..+.
T Consensus 232 i~aA~~aG~~~i~ 244 (286)
T PLN02779 232 LQAAKAAGMRCIV 244 (286)
T ss_pred HHHHHHcCCEEEE
Confidence 6677888987764
No 252
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=52.32 E-value=49 Score=26.25 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=19.0
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCC
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 33 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~ 33 (257)
+++.|.+++++||+.....+ ..++.+|++
T Consensus 99 l~~~g~~v~ivS~s~~~~v~---~~~~~lg~~ 127 (202)
T TIGR01490 99 HKAEGHTIVLVSASLTILVK---PLARILGID 127 (202)
T ss_pred HHHCCCEEEEEeCCcHHHHH---HHHHHcCCc
Confidence 57789999999995533333 334456775
No 253
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=51.81 E-value=17 Score=30.04 Aligned_cols=29 Identities=34% Similarity=0.496 Sum_probs=18.5
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCC
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 33 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~ 33 (257)
|+++|+++++.|+ |++.++...++.+|+.
T Consensus 27 l~~~G~~~vi~Tg---R~~~~~~~~~~~lg~~ 55 (225)
T TIGR02461 27 LKDLGFPIVFVSS---KTRAEQEYYREELGVE 55 (225)
T ss_pred HHHCCCEEEEEeC---CCHHHHHHHHHHcCCC
Confidence 5566777777754 6666666666666653
No 254
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=51.36 E-value=68 Score=26.27 Aligned_cols=70 Identities=24% Similarity=0.350 Sum_probs=46.7
Q ss_pred EEEeCCCCcCHHHHHHHHHhCCCCCC-----------CC-------------c-eechHHHHHHHHHhcC-----CCCCC
Q 025117 10 VFVTNNSTKSRKQYGKKFETLGLTVT-----------EE-------------E-IFASSFAAAAYLKSID-----FPKDK 59 (257)
Q Consensus 10 ~~lTN~s~~~~~~~~~~L~~~G~~~~-----------~~-------------~-i~ts~~~~~~~l~~~~-----~~~~~ 59 (257)
+++|. +....+.+++.|++.|+++- .+ . ||||..++..+++... ...+.
T Consensus 4 ilitr-~~~~~~~l~~~l~~~G~~v~~~p~~~~~~~~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~~~~ 82 (249)
T PRK05928 4 ILVTR-PSPKAEELVELLRELGFVALHFPLIEIEPGRQLPQLAAQLAALGADWVIFTSKNAVEFLLSALKKKKLKWPKNK 82 (249)
T ss_pred EEEeC-CHHHHHHHHHHHHHcCCCEEEeccEEEecCCCcChHHHHhhCCCCCEEEEECHHHHHHHHHHHHhcCcCCCCCC
Confidence 56776 55666788899999998521 11 1 7799998877775321 12346
Q ss_pred EEEEEcCHHHHHHHHHcCCeee
Q 025117 60 KVYVVGEDGILKELELAGFQYL 81 (257)
Q Consensus 60 ~v~vlg~~~~~~~l~~~g~~~~ 81 (257)
+++.+|... .+.|++.|+...
T Consensus 83 ~~~avG~~T-a~~l~~~G~~~~ 103 (249)
T PRK05928 83 KYAAIGEKT-ALALKKLGGKVV 103 (249)
T ss_pred EEEEECHHH-HHHHHHcCCCcc
Confidence 788887654 456788998764
No 255
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=51.34 E-value=1.1e+02 Score=23.61 Aligned_cols=96 Identities=17% Similarity=0.094 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCcccc-------C-----CCc----ccccCchHHHHHHhccCCCccccCCC--
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHL-------T-----DAQ----EWAGGGSMVGAFVGSTQREPLVVGKP-- 177 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~-------~-----~~~----~~~~~g~~~~~i~~~~~~~~~~~gKP-- 177 (257)
...+...+++..+++++...+++|..+..... . ..+ .....|.++..+ .. .....+|
T Consensus 27 ~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~g~li~~~g~~~~~~----~~-e~i~~~~~~ 101 (157)
T smart00775 27 WTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPVLLSPDRLFAAL----HR-EVISKKPEV 101 (157)
T ss_pred cCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCCceEEEcCCcchhhh----hc-ccccCCHHH
Confidence 45677888999988755557777877643310 0 000 011112222111 11 1122444
Q ss_pred -cHHHHHHHHHHhCCCCCcEE-EEcCChhhHHHHHHHcCCeE
Q 025117 178 -STFMMDYLANKFGIQKSQIC-MVGDRLDTDILFGQNGGCKT 217 (257)
Q Consensus 178 -~p~~~~~~~~~~~~~~~~~~-~IGD~~~~Di~~A~~aG~~t 217 (257)
+.+..+.+++.+.-.--..+ -+||+ .+|++.=+++|+..
T Consensus 102 ~K~~~l~~i~~~~~~~~~~f~~~~gn~-~~D~~~y~~~gi~~ 142 (157)
T smart00775 102 FKIACLRDIKSLFPPQGNPFYAGFGNR-ITDVISYSAVGIPP 142 (157)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEeCCC-chhHHHHHHcCCCh
Confidence 33444555544431122343 47888 69999999999964
No 256
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=51.12 E-value=43 Score=30.19 Aligned_cols=109 Identities=25% Similarity=0.241 Sum_probs=62.1
Q ss_pred CccEEEE--eccCCCCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHH---HHHHhccCCC--------
Q 025117 104 DVGAVVV--GFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMV---GAFVGSTQRE-------- 170 (257)
Q Consensus 104 ~~~aVv~--~~d~~~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~---~~i~~~~~~~-------- 170 (257)
+...|+. ..|..+.|+.+..-+..+...+-.++|.||..... +..+. +-.|. +.+..-.+..
T Consensus 90 ~sg~vf~~~~~dw~~l~~~vp~Klktl~~~g~~l~iftnq~~i~--r~~~~---~~~f~~Ki~~i~anl~vPi~~~~A~~ 164 (422)
T KOG2134|consen 90 KSGKVFPKGSMDWRILFPEVPSKLKTLYQDGIKLFIFTNQNGIA--RGKLE---LEEFKKKIKAIVANLGVPIQLLAAII 164 (422)
T ss_pred CCcceeeccCccceeeccccchhhhhhccCCeEEEEEecccccc--cCcch---HHHHHHHHHHHHHhcCCceEEeeecc
Confidence 3444443 23455666666666666665333477889987632 21111 11222 2222212211
Q ss_pred ccccCCCcHHHHHHHHHHhC----CCCCcEEEEcC--------------ChhhHHHHHHHcCCeE
Q 025117 171 PLVVGKPSTFMMDYLANKFG----IQKSQICMVGD--------------RLDTDILFGQNGGCKT 217 (257)
Q Consensus 171 ~~~~gKP~p~~~~~~~~~~~----~~~~~~~~IGD--------------~~~~Di~~A~~aG~~t 217 (257)
.-.++||..-|+++..+... +.-....+||| .-..|+..|-++|+..
T Consensus 165 ~~~yRKP~tGMwe~~~~~~nd~~~Isek~s~fvgdaagr~~~~~~~kkd~S~~D~~FAaN~gvkF 229 (422)
T KOG2134|consen 165 KGKYRKPSTGMWEFLKRLENDSVEISEKASIFVGDAAGRPLDALRRKKDHSSADRKFAANAGVKF 229 (422)
T ss_pred CCcccCcchhHHHHHHHHhhccceeeechhhhhhhhccCccccccCcccccHHHHHHHHhcCCcc
Confidence 12569999999999987663 23334456665 2257999999999864
No 257
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=50.93 E-value=8.6 Score=34.67 Aligned_cols=51 Identities=22% Similarity=0.245 Sum_probs=43.0
Q ss_pred cccCCCcHHHHHHHHHHhCCCCCcEEEEcCChhhHHHHH-HHcCCeEEEEcc
Q 025117 172 LVVGKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFG-QNGGCKTLLVLS 222 (257)
Q Consensus 172 ~~~gKP~p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A-~~aG~~ti~V~~ 222 (257)
...+++++...+.+++.++..-.++++|||+...||.-- +.-|++|++|..
T Consensus 283 e~~~~ySggs~~~~~~~l~~~g~diLy~gdHi~~dvl~skk~~~wrt~lv~p 334 (424)
T KOG2469|consen 283 EQGGVYSGGSLKTVETSMKVKGKDILYGGDHIWGDVLVSKKRRGWRTVLVAP 334 (424)
T ss_pred hhcccCCcchHHHHHHHhcccccceeecccceeeeEEecceecceEEEEEeh
Confidence 445778888889999999888899999999999998744 677999999964
No 258
>PF03990 DUF348: Domain of unknown function (DUF348) ; InterPro: IPR007137 This domain normally occurs as tandem repeats; however it is found as a single copy in the Saccharomyces cerevisiae (Baker's yeast) DNA-binding nuclear protein YCR593 (P25357 from SWISSPROT).
Probab=50.90 E-value=23 Score=20.96 Aligned_cols=35 Identities=31% Similarity=0.462 Sum_probs=25.7
Q ss_pred ccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechH
Q 025117 4 SKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASS 43 (257)
Q Consensus 4 ~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~ 43 (257)
..|+..-+-|..+ .+.+.|++.||.+.+.+.++++
T Consensus 6 ~dG~~~~v~T~a~-----tV~~~L~~~gI~l~~~D~v~p~ 40 (43)
T PF03990_consen 6 VDGKEKTVYTTAS-----TVGDALKELGITLGEEDKVSPS 40 (43)
T ss_pred ECCEEEEEEeCCC-----CHHHHHHhCCCCCCCCCEEecC
Confidence 3566666666644 5678899999999887777653
No 259
>TIGR00227 ribD_Cterm riboflavin-specific deaminase C-terminal domain. Eubacterial riboflavin-specific deaminases have a zinc-binding domain recognized by the dCMP_cyt_deam model toward the N-terminus and this domain toward the C-terminus. Yeast HTP reductase, a riboflavin-biosynthetic enzyme, and several archaeal proteins believed related to riboflavin biosynthesis consist only of this domain and lack the dCMP_cyt_deam domain.
Probab=50.72 E-value=98 Score=25.07 Aligned_cols=65 Identities=17% Similarity=0.138 Sum_probs=39.1
Q ss_pred CcEEEEeCCCCcCHHHHHHHHHhCCCCCC---CCceechHHHHHHHHHhcCCCCCCEEEEEcCHHHHHHHHHcCC
Q 025117 7 KRLVFVTNNSTKSRKQYGKKFETLGLTVT---EEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDGILKELELAGF 78 (257)
Q Consensus 7 ~~~~~lTN~s~~~~~~~~~~L~~~G~~~~---~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~~~~~~~l~~~g~ 78 (257)
.+++++|.+. ...+..+.+.+.|+.+- ..+ + ....+...|++.+ .+++++.|+..+...|-+.|+
T Consensus 95 ~~~~v~t~~~--~~~~~~~~~~~~g~~~i~~~~~~-~-dl~~~l~~L~~~g---~~~llveGG~~L~~~fl~~~L 162 (216)
T TIGR00227 95 APTWVATTEP--ADEEKVKELEDFGVEVLVLETKR-V-DLKKLMEILYEEG---INSVMVEGGGTLNGSLLKEGL 162 (216)
T ss_pred CCEEEEEcCC--CCHHHHHHHHHCCcEEEECCCCC-c-CHHHHHHHHHHcC---CCEEEEeeCHHHHHHHHHCCC
Confidence 4566666422 12234456777777631 111 1 2334455666554 378999999999999988774
No 260
>PRK05625 5-amino-6-(5-phosphoribosylamino)uracil reductase; Validated
Probab=50.16 E-value=89 Score=25.45 Aligned_cols=67 Identities=13% Similarity=0.107 Sum_probs=41.5
Q ss_pred CCcEEEEeCCCCcCHHHHHHHHHhCCCCCC--CCceechHHHHHHHHHhcCCCCCCEEEEEcCHHHHHHHHHcCC
Q 025117 6 GKRLVFVTNNSTKSRKQYGKKFETLGLTVT--EEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDGILKELELAGF 78 (257)
Q Consensus 6 g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~--~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~~~~~~~l~~~g~ 78 (257)
.++++++|.+ ....+..+.|.+.|+.+- .+.-+ ....+.+.|++.+ .+++++.|+..+...|-+.|+
T Consensus 93 ~~~~~v~t~~--~~~~~~~~~l~~~~~~v~~~~~~~~-dl~~~l~~L~~~g---~~~vlveGG~~l~~~fl~~~L 161 (217)
T PRK05625 93 PAKTIVAVSE--AAPSEKVEELEKKGAEVIVAGGERV-DLPDLLEDLYERG---IKRLMVEGGGTLIWSMFKEGL 161 (217)
T ss_pred CCCEEEEEcC--CCCHHHHHHHHHCCCEEEEeCCCCc-CHHHHHHHHHHCC---CCEEEEecCHHHHHHHHHCCC
Confidence 3566666642 223455677888888742 11111 2233445565543 368999999999999988874
No 261
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=49.95 E-value=20 Score=30.82 Aligned_cols=49 Identities=22% Similarity=0.266 Sum_probs=28.2
Q ss_pred ChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHHHHHH
Q 025117 202 RLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKA 254 (257)
Q Consensus 202 ~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~~~l~ 254 (257)
.+..++.+++.+|++.+++.+|-.....- ....|.+-..+..+|.+.+.
T Consensus 86 ~l~~~L~~~~~~Gi~niL~l~GD~~~~g~----~~~~~~~~~~~~~~Li~~i~ 134 (287)
T PF02219_consen 86 ALQSDLLGAHALGIRNILALTGDPPKGGD----HFAKPVFDFDYALDLIRLIR 134 (287)
T ss_dssp HHHHHHHHHHHTT--EEEEESS-TSTTSS----S----TTS-SSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEecCCCCCCCc----cccCCCchhHHHHHHHHHHH
Confidence 45788999999999999999996543210 01233333556677777665
No 262
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=49.36 E-value=81 Score=23.13 Aligned_cols=77 Identities=12% Similarity=0.081 Sum_probs=42.7
Q ss_pred ChhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCC-----CCCceechHHHHHHHHHhcCCCCCCEEEEEc---CHHHHHH
Q 025117 1 MLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTV-----TEEEIFASSFAAAAYLKSIDFPKDKKVYVVG---EDGILKE 72 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~-----~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg---~~~~~~~ 72 (257)
+|+..|..++++- ...+.+++.+...+.+-++ ...+-..........|++.+.+ +..+++| .....+.
T Consensus 22 ~l~~~G~~vi~lG--~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~--~i~i~~GG~~~~~~~~~ 97 (122)
T cd02071 22 ALRDAGFEVIYTG--LRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAG--DILVVGGGIIPPEDYEL 97 (122)
T ss_pred HHHHCCCEEEECC--CCCCHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCC--CCEEEEECCCCHHHHHH
Confidence 3678898887765 3467778888887766541 1122222223344445544331 3344555 2344566
Q ss_pred HHHcCCeee
Q 025117 73 LELAGFQYL 81 (257)
Q Consensus 73 l~~~g~~~~ 81 (257)
++++|+.-+
T Consensus 98 ~~~~G~d~~ 106 (122)
T cd02071 98 LKEMGVAEI 106 (122)
T ss_pred HHHCCCCEE
Confidence 778887554
No 263
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=48.46 E-value=14 Score=30.64 Aligned_cols=27 Identities=30% Similarity=0.263 Sum_probs=22.1
Q ss_pred cEEEEeCCCCc-CHHHHHHHHHhCCCCC
Q 025117 8 RLVFVTNNSTK-SRKQYGKKFETLGLTV 34 (257)
Q Consensus 8 ~~~~lTN~s~~-~~~~~~~~L~~~G~~~ 34 (257)
+|+|+||.|+. --..+++.|.+.|..+
T Consensus 15 ~VR~itN~SSGgIG~AIA~~la~~Ga~V 42 (227)
T TIGR02114 15 SVRSITNHSTGHLGKIITETFLSAGHEV 42 (227)
T ss_pred CceeecCCcccHHHHHHHHHHHHCCCEE
Confidence 69999999765 4488888898888875
No 264
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=47.89 E-value=1.3e+02 Score=26.01 Aligned_cols=76 Identities=16% Similarity=0.218 Sum_probs=42.8
Q ss_pred hhccC-CcEEEEeCCCC-----cCHHHHHHHHHhCCCCCCCCceec-------hHHHHHHHHHhcCCCCCCEEEEEcCH-
Q 025117 2 LRSKG-KRLVFVTNNST-----KSRKQYGKKFETLGLTVTEEEIFA-------SSFAAAAYLKSIDFPKDKKVYVVGED- 67 (257)
Q Consensus 2 L~~~g-~~~~~lTN~s~-----~~~~~~~~~L~~~G~~~~~~~i~t-------s~~~~~~~l~~~~~~~~~~v~vlg~~- 67 (257)
|.+.| +++.|++.... ...+.+.+.|++.|+++..+.+.. ...++.++|++.. .-.+++..++
T Consensus 171 L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~ai~~~nD~ 247 (343)
T PRK10727 171 LIQQGHTRIGYLCSNHSISDAEDRLQGYYDALAESGIPANDRLVTFGEPDESGGEQAMTELLGRGR---NFTAVACYNDS 247 (343)
T ss_pred HHHCCCccEEEEeCCccccchHHHHHHHHHHHHHCCCCCChhhEEeCCCChhHHHHHHHHHHhCCC---CCCEEEEcCcH
Confidence 34445 46888864221 223667788889999865543332 1234555665321 1134444444
Q ss_pred ---HHHHHHHHcCCee
Q 025117 68 ---GILKELELAGFQY 80 (257)
Q Consensus 68 ---~~~~~l~~~g~~~ 80 (257)
+..+.|++.|+++
T Consensus 248 ~A~g~~~al~~~G~~v 263 (343)
T PRK10727 248 MAAGAMGVLNDNGIDV 263 (343)
T ss_pred HHHHHHHHHHHcCCCC
Confidence 4668889999865
No 265
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=47.88 E-value=90 Score=26.07 Aligned_cols=73 Identities=29% Similarity=0.354 Sum_probs=47.6
Q ss_pred CCcEEEEeCCCCcCHHHHHHHHHhCCCCCCC----------Cc----------------eechHHHHHHHHHhcCCCC--
Q 025117 6 GKRLVFVTNNSTKSRKQYGKKFETLGLTVTE----------EE----------------IFASSFAAAAYLKSIDFPK-- 57 (257)
Q Consensus 6 g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~----------~~----------------i~ts~~~~~~~l~~~~~~~-- 57 (257)
|+++.++.=+ ..++.+.+.|...|+.+.. .. +|||+..+..++.......
T Consensus 123 ~~~vl~~~~~--~~r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~v~ftS~~~v~~~~~~~~~~~~~ 200 (248)
T COG1587 123 GKRVLILRGN--GGREVLEEKLEERGAEVREVEVYRTEPPPLDEATLIELLKLGEVDAVVFTSSSAVRALLALAPESGIE 200 (248)
T ss_pred CCeEEEEcCC--CchHHHHHHHHhCCCEEEEEeeeeecCCCccHHHHHHHHHhCCCCEEEEeCHHHHHHHHHHccccchh
Confidence 6787777633 3448889999999985431 11 5688888888887543211
Q ss_pred ---CCEEEEEcCHHHHHHHHHcCCeee
Q 025117 58 ---DKKVYVVGEDGILKELELAGFQYL 81 (257)
Q Consensus 58 ---~~~v~vlg~~~~~~~l~~~g~~~~ 81 (257)
..+++.+|.. ..+.+++.|++..
T Consensus 201 ~~~~~~v~~IG~~-Ta~~l~~~G~~~~ 226 (248)
T COG1587 201 FLERKRVASIGPR-TAETLKELGITVD 226 (248)
T ss_pred HhhCceEEEecHH-HHHHHHHcCCcce
Confidence 2456777654 4456788898753
No 266
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=47.25 E-value=20 Score=27.91 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=24.2
Q ss_pred ccCCcEEEEeCCCCcCH--HHHHHHHHhCCCC
Q 025117 4 SKGKRLVFVTNNSTKSR--KQYGKKFETLGLT 33 (257)
Q Consensus 4 ~~g~~~~~lTN~s~~~~--~~~~~~L~~~G~~ 33 (257)
+.|||+++++|.+-..- .+++++|.++|.=
T Consensus 98 ~l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL 129 (170)
T KOG3349|consen 98 RLGKPLIVVVNDSLMDNHQLELAKQLAEEGYL 129 (170)
T ss_pred HcCCCEEEEeChHhhhhHHHHHHHHHHhcCcE
Confidence 47999999999887665 5678888888874
No 267
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=47.06 E-value=25 Score=23.61 Aligned_cols=39 Identities=18% Similarity=0.352 Sum_probs=33.9
Q ss_pred CCCcHHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcC
Q 025117 175 GKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGG 214 (257)
Q Consensus 175 gKP~p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG 214 (257)
.-|-...++++.+.+++++..+..|-++ -..|--++.+|
T Consensus 25 ~aPftAvlkfaAEeFkv~~~TsAiiTnd-GvGINP~qtAG 63 (82)
T cd01766 25 STPFTAVLKFAAEEFKVPAATSAIITND-GIGINPAQTAG 63 (82)
T ss_pred cCchHHHHHHHHHhcCCCccceeEEecC-ccccChhhccc
Confidence 4577888999999999999988888887 68898999888
No 268
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=46.51 E-value=16 Score=31.69 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=24.7
Q ss_pred hhccC-CcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHHHH
Q 025117 2 LRSKG-KRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAA 46 (257)
Q Consensus 2 L~~~g-~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~~~ 46 (257)
+++.| +++++|||+|. .++.+.|. .+++++-|..+.
T Consensus 104 ~k~~g~~~tflvTNgsl---pdv~~~L~------~~dql~~sLdA~ 140 (296)
T COG0731 104 IKKRGKKTTFLVTNGSL---PDVLEELK------LPDQLYVSLDAP 140 (296)
T ss_pred HHhcCCceEEEEeCCCh---HHHHHHhc------cCCEEEEEeccC
Confidence 57788 79999999665 55555554 566777665543
No 269
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=46.09 E-value=26 Score=29.31 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=21.3
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCC
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 33 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~ 33 (257)
|+++|.++++.| +|++..+.+.++.+|++
T Consensus 28 l~~~g~~~~~~T---gR~~~~~~~~~~~~~~~ 56 (256)
T TIGR01486 28 LQELGIPVIPCT---SKTAAEVEYLRKELGLE 56 (256)
T ss_pred HHHCCCeEEEEc---CCCHHHHHHHHHHcCCC
Confidence 567788888875 47777777777777764
No 270
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=46.03 E-value=27 Score=28.39 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=15.7
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCC
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGL 32 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~ 32 (257)
|+++|+++++.|| |+...+...++.+|+
T Consensus 28 l~~~gi~~~i~Tg---R~~~~~~~~~~~l~~ 55 (221)
T TIGR02463 28 LQEAGIPVILCTS---KTAAEVEYLQKALGL 55 (221)
T ss_pred HHHCCCeEEEEcC---CCHHHHHHHHHHcCC
Confidence 4556667777666 444444444455554
No 271
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=45.89 E-value=27 Score=27.24 Aligned_cols=36 Identities=14% Similarity=0.274 Sum_probs=21.6
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCcee
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIF 40 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ 40 (257)
|++.|.++.++||+.. ..+...++.+|+.---+.|+
T Consensus 84 l~~~g~~~~i~S~~~~---~~~~~~l~~~~l~~~f~~i~ 119 (188)
T TIGR01489 84 IKEHGIDFIVISDGND---FFIDPVLEGIGEKDVFIEIY 119 (188)
T ss_pred HHHcCCcEEEEeCCcH---HHHHHHHHHcCChhheeEEe
Confidence 5677889999998543 33444456667642223444
No 272
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=45.10 E-value=1.3e+02 Score=22.69 Aligned_cols=77 Identities=13% Similarity=0.155 Sum_probs=45.4
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCC-CCCceechHH----HHHHHHHhcCCCCCCEEEEEcCH--------H
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTV-TEEEIFASSF----AAAAYLKSIDFPKDKKVYVVGED--------G 68 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~-~~~~i~ts~~----~~~~~l~~~~~~~~~~v~vlg~~--------~ 68 (257)
||.+|..++++= ...+++++.+...+.+.++ .-.-..++.. -+...|++.+. ++-++++-|.. .
T Consensus 27 lr~~G~eVi~LG--~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~-~~~~i~vGG~~~~~~~~~~~ 103 (137)
T PRK02261 27 LTEAGFEVINLG--VMTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGL-GDILLYVGGNLVVGKHDFEE 103 (137)
T ss_pred HHHCCCEEEECC--CCCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCC-CCCeEEEECCCCCCccChHH
Confidence 788999988885 4577888888888776652 2222222222 23344444433 23455555543 3
Q ss_pred HHHHHHHcCCeee
Q 025117 69 ILKELELAGFQYL 81 (257)
Q Consensus 69 ~~~~l~~~g~~~~ 81 (257)
..+.+++.|+..+
T Consensus 104 ~~~~l~~~G~~~v 116 (137)
T PRK02261 104 VEKKFKEMGFDRV 116 (137)
T ss_pred HHHHHHHcCCCEE
Confidence 4567888887543
No 273
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=45.09 E-value=34 Score=26.87 Aligned_cols=76 Identities=22% Similarity=0.286 Sum_probs=46.3
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHHHHHHHHHhcCCCCCCEEEEEcCH-HHHHHHHHcCCee
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGED-GILKELELAGFQY 80 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~~-~~~~~l~~~g~~~ 80 (257)
|.+.|+++.++|- |...-+.+|.+.+|++.----+---..+..+.+++.+..+ ..+..+|-+ .....++..|+..
T Consensus 47 l~~~Gi~vAIITG---r~s~ive~Ra~~LGI~~~~qG~~dK~~a~~~L~~~~~l~~-e~~ayiGDD~~Dlpvm~~vGls~ 122 (170)
T COG1778 47 LLKSGIKVAIITG---RDSPIVEKRAKDLGIKHLYQGISDKLAAFEELLKKLNLDP-EEVAYVGDDLVDLPVMEKVGLSV 122 (170)
T ss_pred HHHcCCeEEEEeC---CCCHHHHHHHHHcCCceeeechHhHHHHHHHHHHHhCCCH-HHhhhhcCccccHHHHHHcCCcc
Confidence 6789999999996 5666788889999998321111122234455555555432 234455544 2456677777655
Q ss_pred e
Q 025117 81 L 81 (257)
Q Consensus 81 ~ 81 (257)
.
T Consensus 123 a 123 (170)
T COG1778 123 A 123 (170)
T ss_pred c
Confidence 3
No 274
>PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=44.75 E-value=56 Score=29.26 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=36.8
Q ss_pred CcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCcee----------chHH--HHHHHHHhcCCCCCCEEEEEc
Q 025117 7 KRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIF----------ASSF--AAAAYLKSIDFPKDKKVYVVG 65 (257)
Q Consensus 7 ~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~----------ts~~--~~~~~l~~~~~~~~~~v~vlg 65 (257)
+..++..+.+.+..+.++++|++.++.+++++++ +++. ++.+.+++..+.+|++|.+++
T Consensus 292 Id~~v~Hq~n~~~~~~v~~~l~~~~~gl~~~k~~~~~~~~GNt~sAsipi~L~~a~~~g~~~~Gd~vl~~~ 362 (378)
T PRK06816 292 IDYFLPHYSSEYFREKIVELLAKAGFMIPEEKWFTNLATVGNTGSASIYIMLDELLNSGRLKPGQKILCFV 362 (378)
T ss_pred CCEEeeCcccHHHHHHHHHHHHhccCCCChhheEEeccccccccchHHHHHHHHHHHcCCCCCCCEEEEEE
Confidence 3567777777777788888888766666655554 2222 344445444456677777664
No 275
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=44.53 E-value=1.2e+02 Score=22.77 Aligned_cols=76 Identities=13% Similarity=0.117 Sum_probs=40.6
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCC-CCCceechHH----HHHHHHHhcCCCCCCEEEEEc---CHHHHHHH
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTV-TEEEIFASSF----AAAAYLKSIDFPKDKKVYVVG---EDGILKEL 73 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~-~~~~i~ts~~----~~~~~l~~~~~~~~~~v~vlg---~~~~~~~l 73 (257)
|+..|..|+- ++.-.+++++.+...+-+-++ --.-..+++. .+.+.|++.+. .....++| .....++|
T Consensus 26 l~~~GfeVi~--lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~--~~i~vivGG~~~~~~~~~l 101 (132)
T TIGR00640 26 YADLGFDVDV--GPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGR--PDILVVVGGVIPPQDFDEL 101 (132)
T ss_pred HHhCCcEEEE--CCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCC--CCCEEEEeCCCChHhHHHH
Confidence 5667766543 334577788888877766652 2222222222 34444544432 13335556 33456677
Q ss_pred HHcCCeee
Q 025117 74 ELAGFQYL 81 (257)
Q Consensus 74 ~~~g~~~~ 81 (257)
+++|+.-+
T Consensus 102 ~~~Gvd~~ 109 (132)
T TIGR00640 102 KEMGVAEI 109 (132)
T ss_pred HHCCCCEE
Confidence 88886543
No 276
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=43.44 E-value=16 Score=32.55 Aligned_cols=26 Identities=27% Similarity=0.338 Sum_probs=17.6
Q ss_pred ChhccCCcEEEEeCCCCcCHHHHHHH
Q 025117 1 MLRSKGKRLVFVTNNSTKSRKQYGKK 26 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~~~~~~~~~ 26 (257)
+|+++|+++.++||+.....+.+.+.
T Consensus 195 ~Lr~~G~klfLvTNS~~~yt~~im~~ 220 (343)
T TIGR02244 195 KLKEHGKKLFLLTNSDYDYTDKGMKY 220 (343)
T ss_pred HHHHCCCeEEEEeCCCHHHHHHHHHH
Confidence 37889999999999554333333333
No 277
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=42.88 E-value=20 Score=27.93 Aligned_cols=19 Identities=47% Similarity=0.646 Sum_probs=14.6
Q ss_pred hhccCCcEEEEeCCCCcCH
Q 025117 2 LRSKGKRLVFVTNNSTKSR 20 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~ 20 (257)
|.+.|+.++++||-++...
T Consensus 41 l~~~Gy~IvIvTNQ~gi~~ 59 (159)
T PF08645_consen 41 LHKKGYKIVIVTNQSGIGR 59 (159)
T ss_dssp HHHTTEEEEEEEE-CCCCC
T ss_pred HHhcCCeEEEEeCcccccc
Confidence 5678999999999876654
No 278
>COG4996 Predicted phosphatase [General function prediction only]
Probab=41.97 E-value=14 Score=28.04 Aligned_cols=31 Identities=26% Similarity=0.462 Sum_probs=21.2
Q ss_pred cccCCCcHHHH---HHHHHHh------CCCCCcEEEEcCC
Q 025117 172 LVVGKPSTFMM---DYLANKF------GIQKSQICMVGDR 202 (257)
Q Consensus 172 ~~~gKP~p~~~---~~~~~~~------~~~~~~~~~IGD~ 202 (257)
+.+-+|+|.-+ .++++++ .+.|++++++.|+
T Consensus 86 y~ViePhP~K~~ML~~llr~i~~er~~~ikP~~Ivy~DDR 125 (164)
T COG4996 86 YIVIEPHPYKFLMLSQLLREINTERNQKIKPSEIVYLDDR 125 (164)
T ss_pred EEEecCCChhHHHHHHHHHHHHHhhccccCcceEEEEecc
Confidence 34468887543 3444443 4689999999998
No 279
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=41.87 E-value=28 Score=29.49 Aligned_cols=29 Identities=28% Similarity=0.350 Sum_probs=19.8
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCC
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 33 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~ 33 (257)
|++.|+++++.|+ |+...+...++.+|++
T Consensus 33 l~~~Gi~~~iaTg---R~~~~~~~~~~~l~l~ 61 (273)
T PRK00192 33 LKEKGIPVIPCTS---KTAAEVEVLRKELGLE 61 (273)
T ss_pred HHHCCCEEEEEcC---CCHHHHHHHHHHcCCC
Confidence 5667788887776 5566666666677764
No 280
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=41.87 E-value=24 Score=29.86 Aligned_cols=46 Identities=24% Similarity=0.184 Sum_probs=37.0
Q ss_pred cccCCCcHH----HHHHHHHHhCCCCC--cEEEEcCChhhHHHHHHHcCCeE
Q 025117 172 LVVGKPSTF----MMDYLANKFGIQKS--QICMVGDRLDTDILFGQNGGCKT 217 (257)
Q Consensus 172 ~~~gKP~p~----~~~~~~~~~~~~~~--~~~~IGD~~~~Di~~A~~aG~~t 217 (257)
.++-||+|. +|..-++.+|++|. ++-||.|+=++--.||.-.|+..
T Consensus 81 QVilKPsP~niQelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWEV 132 (283)
T PRK09348 81 QVILKPSPDNIQELYLGSLEALGIDPLEHDIRFVEDNWESPTLGAWGLGWEV 132 (283)
T ss_pred EEEEcCCCccHHHHHHHHHHHhCCCccccceeEeecCCCCCcccccccceEE
Confidence 346799884 56677888999864 69999999888899999998753
No 281
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=41.86 E-value=1.2e+02 Score=21.19 Aligned_cols=77 Identities=19% Similarity=0.130 Sum_probs=41.9
Q ss_pred EEEEEcC-----HHHHHHHHHcCCeeeCC-CCCCCCccccCCCcccCCCCCccEEEEeccCCCCHHHHHHHHHHHHcCCC
Q 025117 60 KVYVVGE-----DGILKELELAGFQYLGG-PEDGGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENPG 133 (257)
Q Consensus 60 ~v~vlg~-----~~~~~~l~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~aVv~~~d~~~~~~~~~~~~~~l~~~~~ 133 (257)
+|+++|. ..+++.+++.|.....- .+...... ...+...-..+|.||+-.+. .+..-+..+-+..++ .+
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~---~~~l~~~i~~aD~VIv~t~~-vsH~~~~~vk~~akk-~~ 75 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKK---ASRLPSKIKKADLVIVFTDY-VSHNAMWKVKKAAKK-YG 75 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccc---hhHHHHhcCCCCEEEEEeCC-cChHHHHHHHHHHHH-cC
Confidence 3678888 56788888898765421 00000000 00011122345888887653 555555555555554 57
Q ss_pred ceEEEecC
Q 025117 134 CLFIATNR 141 (257)
Q Consensus 134 ~~~i~tn~ 141 (257)
.+++.++.
T Consensus 76 ip~~~~~~ 83 (97)
T PF10087_consen 76 IPIIYSRS 83 (97)
T ss_pred CcEEEECC
Confidence 77877764
No 282
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=41.53 E-value=23 Score=29.90 Aligned_cols=46 Identities=24% Similarity=0.205 Sum_probs=37.1
Q ss_pred cccCCCcHH----HHHHHHHHhCCCC--CcEEEEcCChhhHHHHHHHcCCeE
Q 025117 172 LVVGKPSTF----MMDYLANKFGIQK--SQICMVGDRLDTDILFGQNGGCKT 217 (257)
Q Consensus 172 ~~~gKP~p~----~~~~~~~~~~~~~--~~~~~IGD~~~~Di~~A~~aG~~t 217 (257)
.++-||+|. +|..-++.+|++| .++-||.|+=++--.||.-.|+..
T Consensus 77 QViiKPsP~niQelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGLGWEV 128 (279)
T cd00733 77 QVIIKPSPDNIQELYLESLEALGINPKEHDIRFVEDNWESPTLGAWGLGWEV 128 (279)
T ss_pred EEEECCCCccHHHHHHHHHHHhCCCccccCeeEeecCCCCCcccccccccEE
Confidence 346799884 5667788899976 469999999989999999998754
No 283
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=41.50 E-value=3e+02 Score=25.64 Aligned_cols=147 Identities=12% Similarity=0.151 Sum_probs=72.1
Q ss_pred CEEEEEcC------HHHHHHHHHcCCeeeCCCCCCCCccccCCCcccCCC-CCccEEEEeccCCCCHHHHHHHHHHHHcC
Q 025117 59 KKVYVVGE------DGILKELELAGFQYLGGPEDGGKKIELKPGFLMEHD-KDVGAVVVGFDRYFNYYKVQYGTLCIREN 131 (257)
Q Consensus 59 ~~v~vlg~------~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~aVv~~~d~~~~~~~~~~~~~~l~~~ 131 (257)
+.+-++|+ ..+..+|++.|+++.....+. ...+.. -....++++..++.+ .+...|.+.
T Consensus 194 ~~vnl~G~~~~~~~~~i~~lL~~lGI~v~~~lp~~---------~~~eL~~~~~~~~~c~~~P~ls-----~aa~~Le~~ 259 (457)
T CHL00073 194 PPLVLFGSLPSTVASQLTLELKRQGIKVSGWLPSQ---------RYTDLPSLGEGVYVCGVNPFLS-----RTATTLMRR 259 (457)
T ss_pred CcEEEEEecCcccHHHHHHHHHHcCCeEeEEeCCC---------CHHHHHhhCcccEEEEcCcchH-----HHHHHHHHH
Confidence 35888898 678999999999986422111 111111 112344444444333 334445332
Q ss_pred CCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHh--CCCCCcEEEEcCC-hhhHH-
Q 025117 132 PGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKF--GIQKSQICMVGDR-LDTDI- 207 (257)
Q Consensus 132 ~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~--~~~~~~~~~IGD~-~~~Di- 207 (257)
-+++.+..- ++. + ..+...|+..+....|..+..+...-..++ .+++.+ -+.-.++.++||. +..-+
T Consensus 260 ~gvp~~~~P----~Pi--G--i~~Td~fLr~Ia~~~G~~pe~l~~Er~rl~-dal~d~~~~L~GKrvai~Gdp~~~i~La 330 (457)
T CHL00073 260 RKCKLIGAP----FPI--G--PDGTRAWIEKICSVFGIEPQGLEEREEQIW-ESLKDYLDLVRGKSVFFMGDNLLEISLA 330 (457)
T ss_pred hCCceeecC----CcC--c--HHHHHHHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHCCCEEEEECCCcHHHHHH
Confidence 354444321 121 1 223445666666555432111111111111 222221 1233567899993 33332
Q ss_pred HHHHHcCCeEEEEccCCCChh
Q 025117 208 LFGQNGGCKTLLVLSGVTSLS 228 (257)
Q Consensus 208 ~~A~~aG~~ti~V~~G~~~~~ 228 (257)
.+-.++||..+.+.+...+.+
T Consensus 331 rfL~elGmevV~vgt~~~~~~ 351 (457)
T CHL00073 331 RFLIRCGMIVYEIGIPYMDKR 351 (457)
T ss_pred HHHHHCCCEEEEEEeCCCChh
Confidence 345779999999988765444
No 284
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=41.27 E-value=47 Score=27.43 Aligned_cols=46 Identities=15% Similarity=-0.051 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHhCCC---CCcEEEEcCChhhHHHHHHHcCC-----eEEEEccCC
Q 025117 178 STFMMDYLANKFGIQ---KSQICMVGDRLDTDILFGQNGGC-----KTLLVLSGV 224 (257)
Q Consensus 178 ~p~~~~~~~~~~~~~---~~~~~~IGD~~~~Di~~A~~aG~-----~ti~V~~G~ 224 (257)
+-...+.+++.++.. +.-++++||+ .||-.+=+.+.- -++.|.++.
T Consensus 166 KG~av~~ll~~~~~~~~~~~~~l~~GDD-~tDE~~f~~~~~~~~~~~~i~V~~~~ 219 (235)
T PF02358_consen 166 KGSAVRRLLEELPFAGPKPDFVLYIGDD-RTDEDAFRALRELEEGGFGIKVGSVS 219 (235)
T ss_dssp HHHHHHHHHTTS---------EEEEESS-HHHHHHHHTTTTS----EEEEES---
T ss_pred hHHHHHHHHHhcCccccccceeEEecCC-CCCHHHHHHHHhcccCCCCeEEEeec
Confidence 346677777777654 6789999999 689876555433 467776653
No 285
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=40.89 E-value=1.4e+02 Score=23.51 Aligned_cols=95 Identities=11% Similarity=0.051 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCc
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQ 195 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~ 195 (257)
.+..++..++...+.......+++.++.. .+...+.+. .+.+...+.=-+++=++.+++++.-+ .-
T Consensus 61 ~s~~Dil~al~~a~~~~~~Iavv~~~~~~---------~~~~~~~~l----l~~~i~~~~~~~~~e~~~~i~~~~~~-G~ 126 (176)
T PF06506_consen 61 ISGFDILRALAKAKKYGPKIAVVGYPNII---------PGLESIEEL----LGVDIKIYPYDSEEEIEAAIKQAKAE-GV 126 (176)
T ss_dssp --HHHHHHHHHHCCCCTSEEEEEEESS-S---------CCHHHHHHH----HT-EEEEEEESSHHHHHHHHHHHHHT-T-
T ss_pred CCHhHHHHHHHHHHhcCCcEEEEeccccc---------HHHHHHHHH----hCCceEEEEECCHHHHHHHHHHHHHc-CC
Confidence 56667777777666545556666654331 122222222 23332111112344455555554211 23
Q ss_pred EEEEcCChhhHHHHHHHcCCeEEEEccCCCC
Q 025117 196 ICMVGDRLDTDILFGQNGGCKTLLVLSGVTS 226 (257)
Q Consensus 196 ~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~ 226 (257)
-++||+.. . ...|++.|+.++++.+|..+
T Consensus 127 ~viVGg~~-~-~~~A~~~gl~~v~i~sg~es 155 (176)
T PF06506_consen 127 DVIVGGGV-V-CRLARKLGLPGVLIESGEES 155 (176)
T ss_dssp -EEEESHH-H-HHHHHHTTSEEEESS--HHH
T ss_pred cEEECCHH-H-HHHHHHcCCcEEEEEecHHH
Confidence 47899984 3 78899999999999987543
No 286
>PRK07681 aspartate aminotransferase; Provisional
Probab=40.31 E-value=2.7e+02 Score=24.83 Aligned_cols=65 Identities=6% Similarity=0.031 Sum_probs=39.6
Q ss_pred cCHHHHHHHHHh-CCCCCCC-Ccee-chHHHHHHHH-HhcCCCCCCEEEEEc--CHHHHHHHHHcCCeeeC
Q 025117 18 KSRKQYGKKFET-LGLTVTE-EEIF-ASSFAAAAYL-KSIDFPKDKKVYVVG--EDGILKELELAGFQYLG 82 (257)
Q Consensus 18 ~~~~~~~~~L~~-~G~~~~~-~~i~-ts~~~~~~~l-~~~~~~~~~~v~vlg--~~~~~~~l~~~g~~~~~ 82 (257)
..++.+++.+.+ .|+++++ ++|+ |+|...+-++ ...-..+|..|.+-. -......++..|.+++.
T Consensus 73 ~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~ 143 (399)
T PRK07681 73 EFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYANPGDIILVPDPGYTAYETGIQMAGATSYY 143 (399)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHhcCCEEEE
Confidence 345777777754 6999987 7776 6655433322 221224566776643 33567777888887754
No 287
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=40.28 E-value=2.3e+02 Score=24.11 Aligned_cols=74 Identities=26% Similarity=0.317 Sum_probs=40.5
Q ss_pred hhccC-CcEEEEeCCCC------cCHHHHHHHHHhCCCCCCCCceec------hH-HHHHHHHHhcCCCCCCEEEEEcCH
Q 025117 2 LRSKG-KRLVFVTNNST------KSRKQYGKKFETLGLTVTEEEIFA------SS-FAAAAYLKSIDFPKDKKVYVVGED 67 (257)
Q Consensus 2 L~~~g-~~~~~lTN~s~------~~~~~~~~~L~~~G~~~~~~~i~t------s~-~~~~~~l~~~~~~~~~~v~vlg~~ 67 (257)
|.+.| +++.|++.... ...+.+.+.|++.|+++.+..++. ++ .++..+++. + + .+.+..++
T Consensus 171 L~~~G~~~I~~i~g~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~--p--~ai~~~~d 245 (329)
T TIGR01481 171 LIAKGHKSIAFVGGPLSDSINGEDRLEGYKEALNKAGIQFGEDLVCEGKYSYDAGYKAFAELKGS-L--P--TAVFVASD 245 (329)
T ss_pred HHHCCCCeEEEEecCcccccchHHHHHHHHHHHHHcCCCCCcceEEecCCChHHHHHHHHHHhCC-C--C--CEEEEcCc
Confidence 34455 46888864221 123556777888998866543332 12 233344432 1 2 34444444
Q ss_pred ----HHHHHHHHcCCee
Q 025117 68 ----GILKELELAGFQY 80 (257)
Q Consensus 68 ----~~~~~l~~~g~~~ 80 (257)
++.+.|++.|+++
T Consensus 246 ~~A~g~~~al~~~g~~v 262 (329)
T TIGR01481 246 EMAAGILNAAMDAGIKV 262 (329)
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 4677888888765
No 288
>PRK00208 thiG thiazole synthase; Reviewed
Probab=39.32 E-value=67 Score=27.17 Aligned_cols=48 Identities=10% Similarity=0.227 Sum_probs=36.1
Q ss_pred CCCcHHHHHHHHHHhCCCCCcEEEEcCCh--hhHHHHHHHcCCeEEEEccCCCC
Q 025117 175 GKPSTFMMDYLANKFGIQKSQICMVGDRL--DTDILFGQNGGCKTLLVLSGVTS 226 (257)
Q Consensus 175 gKP~p~~~~~~~~~~~~~~~~~~~IGD~~--~~Di~~A~~aG~~ti~V~~G~~~ 226 (257)
|--+|+.++.+.+..++ .++++=.+ ..|+.-|.++|.+.++|.++...
T Consensus 160 gi~~~~~i~~i~e~~~v----pVIveaGI~tpeda~~AmelGAdgVlV~SAItk 209 (250)
T PRK00208 160 GLLNPYNLRIIIEQADV----PVIVDAGIGTPSDAAQAMELGADAVLLNTAIAV 209 (250)
T ss_pred CCCCHHHHHHHHHhcCC----eEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhC
Confidence 33358888888776443 35665433 58999999999999999999875
No 289
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=39.28 E-value=1.1e+02 Score=29.04 Aligned_cols=75 Identities=20% Similarity=0.245 Sum_probs=42.6
Q ss_pred ChhccCC-cEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHHHHHHHHHhcCCCCCCEEEEEcCH-HHHHHHHHcCC
Q 025117 1 MLRSKGK-RLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGED-GILKELELAGF 78 (257)
Q Consensus 1 ~L~~~g~-~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~~-~~~~~l~~~g~ 78 (257)
.|+++|+ ++.++||.. .......++++|++---.++....+ ...+++... .++.+.++|-. .....++.+|+
T Consensus 373 ~L~~~Gi~~v~vvTgd~---~~~a~~i~~~lgi~~~f~~~~p~~K--~~~i~~l~~-~~~~v~~vGDg~nD~~al~~A~v 446 (536)
T TIGR01512 373 ELKALGIEKVVMLTGDR---RAVAERVARELGIDEVHAELLPEDK--LEIVKELRE-KYGPVAMVGDGINDAPALAAADV 446 (536)
T ss_pred HHHHcCCCcEEEEcCCC---HHHHHHHHHHcCChhhhhccCcHHH--HHHHHHHHh-cCCEEEEEeCCHHHHHHHHhCCE
Confidence 3788999 999999954 3444444566788521112221111 122322211 23578888854 56778888886
Q ss_pred eee
Q 025117 79 QYL 81 (257)
Q Consensus 79 ~~~ 81 (257)
-+.
T Consensus 447 gia 449 (536)
T TIGR01512 447 GIA 449 (536)
T ss_pred EEE
Confidence 554
No 290
>PRK11590 hypothetical protein; Provisional
Probab=39.07 E-value=19 Score=29.31 Aligned_cols=100 Identities=11% Similarity=-0.105 Sum_probs=51.5
Q ss_pred CHHHHHHHH-HHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHH----hccCCCccccCCCc--HHHHHHHHHHh
Q 025117 117 NYYKVQYGT-LCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFV----GSTQREPLVVGKPS--TFMMDYLANKF 189 (257)
Q Consensus 117 ~~~~~~~~~-~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~----~~~~~~~~~~gKP~--p~~~~~~~~~~ 189 (257)
.|+.+.+.+ ..+++.+..++|+||+...+.. ......+.......+. ...+.. ..|.|. ..=...+.+.+
T Consensus 96 ~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~-~il~~l~~~~~~~~i~t~l~~~~tg~--~~g~~c~g~~K~~~l~~~~ 172 (211)
T PRK11590 96 AFPVVQERLTTYLLSSDADVWLITGSPQPLVE-QVYFDTPWLPRVNLIASQMQRRYGGW--VLTLRCLGHEKVAQLERKI 172 (211)
T ss_pred CCccHHHHHHHHHHhCCCEEEEEeCCcHHHHH-HHHHHccccccCceEEEEEEEEEccE--ECCccCCChHHHHHHHHHh
Confidence 377888888 4666433367889999875432 1111112100001111 111111 112211 01112333345
Q ss_pred CCCCCcEEEEcCChhhHHHHHHHcCCeEEEEc
Q 025117 190 GIQKSQICMVGDRLDTDILFGQNGGCKTLLVL 221 (257)
Q Consensus 190 ~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~ 221 (257)
+.+...+.+-||| ..|+..-..+| ..++|+
T Consensus 173 ~~~~~~~~aY~Ds-~~D~pmL~~a~-~~~~vn 202 (211)
T PRK11590 173 GTPLRLYSGYSDS-KQDNPLLYFCQ-HRWRVT 202 (211)
T ss_pred CCCcceEEEecCC-cccHHHHHhCC-CCEEEC
Confidence 6667788899999 69999999888 444454
No 291
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=39.05 E-value=31 Score=22.82 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=13.4
Q ss_pred HHHHHHhCCCCCcEEEEcCC
Q 025117 183 DYLANKFGIQKSQICMVGDR 202 (257)
Q Consensus 183 ~~~~~~~~~~~~~~~~IGD~ 202 (257)
..+|++.|+.+.+++.|||-
T Consensus 46 ~~~L~~~G~~~GD~V~Ig~~ 65 (69)
T PF09269_consen 46 EKALRKAGAKEGDTVRIGDY 65 (69)
T ss_dssp HHHHHTTT--TT-EEEETTE
T ss_pred HHHHHHcCCCCCCEEEEcCE
Confidence 45666778899999999984
No 292
>PRK08636 aspartate aminotransferase; Provisional
Probab=38.99 E-value=2.9e+02 Score=24.74 Aligned_cols=65 Identities=12% Similarity=-0.036 Sum_probs=40.5
Q ss_pred cCHHHHHHHHHh-CCCCCCCC-ce-echHHHHHHHHH-hcCCCCCCEEEEEcC--HHHHHHHHHcCCeeeC
Q 025117 18 KSRKQYGKKFET-LGLTVTEE-EI-FASSFAAAAYLK-SIDFPKDKKVYVVGE--DGILKELELAGFQYLG 82 (257)
Q Consensus 18 ~~~~~~~~~L~~-~G~~~~~~-~i-~ts~~~~~~~l~-~~~~~~~~~v~vlg~--~~~~~~l~~~g~~~~~ 82 (257)
.-++.+++.|++ .|++++++ +| +|+|...+-++- +.-..++..|.+... ......++..|.++..
T Consensus 75 ~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~ 145 (403)
T PRK08636 75 KLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAITNPGDVAIVPDPAYPIHSQAFILAGGNVHK 145 (403)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEE
Confidence 456888888865 59999887 56 577764443332 221235667766432 3466667778877654
No 293
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=38.98 E-value=54 Score=27.69 Aligned_cols=62 Identities=15% Similarity=0.193 Sum_probs=40.8
Q ss_pred HHHHHHHHHhCCCCCcEEEEcCC----hhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHHHHHHh
Q 025117 180 FMMDYLANKFGIQKSQICMVGDR----LDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKAA 255 (257)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~IGD~----~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~~~l~~ 255 (257)
++=...++.++++ +++-=|| ...=+.+|+.+|+..+.|..... ..+..++.+++|+++++++
T Consensus 184 e~n~al~~~~~i~---~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~-----------~~~~~~~~~~~e~l~~l~~ 249 (249)
T PF02571_consen 184 ELNRALFRQYGID---VLVTKESGGSGFDEKIEAARELGIPVIVIKRPPE-----------PYGDPVVETIEELLDWLEQ 249 (249)
T ss_pred HHHHHHHHHcCCC---EEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCC-----------CCCCcccCCHHHHHHHHhC
Confidence 4444556777764 3332221 23448899999999999987532 2355557999999999864
No 294
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=38.57 E-value=43 Score=28.33 Aligned_cols=43 Identities=12% Similarity=0.211 Sum_probs=33.3
Q ss_pred HHHHHHHHHhCCCCCcEEEEcCChhhHHHH----HHHcCCeEEEEccC
Q 025117 180 FMMDYLANKFGIQKSQICMVGDRLDTDILF----GQNGGCKTLLVLSG 223 (257)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~----A~~aG~~ti~V~~G 223 (257)
.++...+++.+..|+.++||.|+ ...+.. .+..|+..+.+.+.
T Consensus 165 ~~L~~fL~~~~~~pk~IIfIDD~-~~nl~sv~~a~k~~~I~f~G~~Yt 211 (252)
T PF11019_consen 165 EVLKYFLDKINQSPKKIIFIDDN-KENLKSVEKACKKSGIDFIGFHYT 211 (252)
T ss_pred HHHHHHHHHcCCCCCeEEEEeCC-HHHHHHHHHHHhhCCCcEEEEEEc
Confidence 67788889999999999999999 466653 35568887777654
No 295
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=38.28 E-value=2.4e+02 Score=23.59 Aligned_cols=70 Identities=21% Similarity=0.297 Sum_probs=50.0
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHH-hCCCCCCCCceechHHHHHHHHHhcCCCCCCEEEEEcCHH------HHHHHH
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFE-TLGLTVTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDG------ILKELE 74 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~-~~G~~~~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~~~------~~~~l~ 74 (257)
|.+.|-.++++.=| |.+.+++..+ ..++++ ++-..+++.-+++.+. ++|.++|+.. .+..|.
T Consensus 71 Le~~GAd~i~l~~N---T~H~~~d~iq~~~~iPl-----lhIidaTa~~ik~~g~---kkvgLLgT~~Tm~~~fY~~~l~ 139 (230)
T COG1794 71 LERAGADFIVLPTN---TMHKVADDIQKAVGIPL-----LHIIDATAKAIKAAGA---KKVGLLGTRFTMEQGFYRKRLE 139 (230)
T ss_pred HHhcCCCEEEEeCC---cHHHHHHHHHHhcCCCe-----ehHHHHHHHHHHhcCC---ceeEEeeccchHHhHHHHHHHH
Confidence 66778777666543 4677888887 478873 3344677788877654 7899999843 477888
Q ss_pred HcCCeeeC
Q 025117 75 LAGFQYLG 82 (257)
Q Consensus 75 ~~g~~~~~ 82 (257)
+.|++++.
T Consensus 140 ~~gievvv 147 (230)
T COG1794 140 EKGIEVVV 147 (230)
T ss_pred HCCceEec
Confidence 99988874
No 296
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=38.19 E-value=1.2e+02 Score=24.93 Aligned_cols=79 Identities=20% Similarity=0.321 Sum_probs=45.7
Q ss_pred ChhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHHHHHH------HH---HhcCCCCCCEEEEEc-CHHHH
Q 025117 1 MLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAA------YL---KSIDFPKDKKVYVVG-EDGIL 70 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~~~~~------~l---~~~~~~~~~~v~vlg-~~~~~ 70 (257)
+|+++|+++...||+ ++..+...|...|+.--.+.++|+...... || ++.++.+. ++.++- +..=.
T Consensus 97 ~L~~~~i~~avaS~s---~~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~-~CvviEDs~~Gi 172 (221)
T COG0637 97 QLKARGIPLAVASSS---PRRAAERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDPE-ECVVVEDSPAGI 172 (221)
T ss_pred HHHhcCCcEEEecCC---hHHHHHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCChH-HeEEEecchhHH
Confidence 377888999888883 344566667888887666666666554332 22 22234333 333432 33334
Q ss_pred HHHHHcCCeeeCC
Q 025117 71 KELELAGFQYLGG 83 (257)
Q Consensus 71 ~~l~~~g~~~~~~ 83 (257)
+..+.+|..++..
T Consensus 173 ~Aa~aAGm~vv~v 185 (221)
T COG0637 173 QAAKAAGMRVVGV 185 (221)
T ss_pred HHHHHCCCEEEEe
Confidence 4556778777653
No 297
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=37.73 E-value=35 Score=32.25 Aligned_cols=34 Identities=18% Similarity=0.301 Sum_probs=24.6
Q ss_pred hhccCCcEEEEeCCCCc-----CHHH----HHHHHHhCCCCCC
Q 025117 2 LRSKGKRLVFVTNNSTK-----SRKQ----YGKKFETLGLTVT 35 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~-----~~~~----~~~~L~~~G~~~~ 35 (257)
|++.|++++++||.+.. +.++ +...|+.+|++++
T Consensus 209 L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgipfd 251 (526)
T TIGR01663 209 LEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVPFQ 251 (526)
T ss_pred HHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCceE
Confidence 67899999999998773 2333 4455677998743
No 298
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=37.31 E-value=1.9e+02 Score=23.52 Aligned_cols=74 Identities=26% Similarity=0.418 Sum_probs=44.2
Q ss_pred cCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCC-------------------------Cc-eechHHHHHHHHHhcCCC--
Q 025117 5 KGKRLVFVTNNSTKSRKQYGKKFETLGLTVTE-------------------------EE-IFASSFAAAAYLKSIDFP-- 56 (257)
Q Consensus 5 ~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~-------------------------~~-i~ts~~~~~~~l~~~~~~-- 56 (257)
.|+++++.. +...+..+.+.|++.|..+.. +- +|||...+..+++.....
T Consensus 124 ~~~~ili~~--~~~~~~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~ivftS~~~v~~~~~~~~~~~~ 201 (249)
T PRK05928 124 KGKRVLYLR--GNGGREVLGDTLEERGAEVDECEVYERVPPKLDGAELLARLQSGEVDAVIFTSPSTVRAFFSLAPELGR 201 (249)
T ss_pred CCCEEEEEC--CCCCHHHHHHHHHHCCCEEeEEEEEEeeCCCCChHHHHHHHHhCCCCEEEECCHHHHHHHHHHhcccch
Confidence 477877776 345677889999998864221 10 567777776666543211
Q ss_pred ----CCCEEEEEcCHHHHHHHHHcCCeee
Q 025117 57 ----KDKKVYVVGEDGILKELELAGFQYL 81 (257)
Q Consensus 57 ----~~~~v~vlg~~~~~~~l~~~g~~~~ 81 (257)
...+++.+| +...+.+++.|+...
T Consensus 202 ~~~~~~~~~~aiG-~~Ta~~l~~~G~~~~ 229 (249)
T PRK05928 202 REWLLSCKAVVIG-ERTAEALRELGIKVI 229 (249)
T ss_pred hHHHhCCeEEEeC-HHHHHHHHHcCCCcc
Confidence 123444454 445566778886543
No 299
>PRK04296 thymidine kinase; Provisional
Probab=37.17 E-value=44 Score=26.74 Aligned_cols=95 Identities=12% Similarity=0.151 Sum_probs=46.7
Q ss_pred CccEEEEeccCCCCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCc--cccCCCcHHH
Q 025117 104 DVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREP--LVVGKPSTFM 181 (257)
Q Consensus 104 ~~~aVv~~~d~~~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~--~~~gKP~p~~ 181 (257)
+.+.|++.--..++-+.+.+.++.++. .+..+|+|.-+..+.. . .+.+...+.......+.... ..+|+|.+..
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~~-~g~~vi~tgl~~~~~~--~-~f~~~~~L~~~aD~V~~l~~vC~~Cg~~a~~~ 153 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLDD-LGIPVICYGLDTDFRG--E-PFEGSPYLLALADKVTELKAICVHCGRKATMN 153 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHHH-cCCeEEEEecCccccc--C-cCchHHHHHHhcCeEEEeeEEccccCCccceE
Confidence 456666654434444556666777664 6888888887765421 1 22222223332222222221 2467655443
Q ss_pred HHHHHHHhCCCCCcEEEEcCC
Q 025117 182 MDYLANKFGIQKSQICMVGDR 202 (257)
Q Consensus 182 ~~~~~~~~~~~~~~~~~IGD~ 202 (257)
+...-..--...++.+.|||+
T Consensus 154 ~r~~~~~~~~~~~~~~~ig~~ 174 (190)
T PRK04296 154 QRLIDGGPAVYEGPQVLVGGN 174 (190)
T ss_pred EEEeCCCCccCCCCEEEECCc
Confidence 332210000123578899985
No 300
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=37.07 E-value=39 Score=28.13 Aligned_cols=29 Identities=34% Similarity=0.574 Sum_probs=21.6
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCC
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 33 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~ 33 (257)
|+++|.++++.|+ |+...+.+.+.++|++
T Consensus 28 l~~~G~~~~iaTG---R~~~~~~~~~~~~~~~ 56 (256)
T TIGR00099 28 LREKGIKVVLATG---RPYKEVKNILKELGLD 56 (256)
T ss_pred HHHCCCeEEEEeC---CCHHHHHHHHHHcCCC
Confidence 6788999999998 4455666666677764
No 301
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=37.01 E-value=23 Score=29.39 Aligned_cols=27 Identities=30% Similarity=0.242 Sum_probs=22.5
Q ss_pred cEEEEeCCCCc-CHHHHHHHHHhCCCCC
Q 025117 8 RLVFVTNNSTK-SRKQYGKKFETLGLTV 34 (257)
Q Consensus 8 ~~~~lTN~s~~-~~~~~~~~L~~~G~~~ 34 (257)
+|+|+||.|+- .-..+++.|.+.|..+
T Consensus 16 ~VR~itN~SSG~iG~aLA~~L~~~G~~V 43 (229)
T PRK06732 16 SVRGITNHSTGQLGKIIAETFLAAGHEV 43 (229)
T ss_pred CceeecCccchHHHHHHHHHHHhCCCEE
Confidence 58999998874 6689999999889764
No 302
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=36.79 E-value=2.7e+02 Score=23.85 Aligned_cols=75 Identities=21% Similarity=0.239 Sum_probs=41.4
Q ss_pred hccC-CcEEEEeCCCCc-----CHHHHHHHHHhCCCCCCCCceec-------hHHHHHHHHHhcCCCCCCEEEEEcCH--
Q 025117 3 RSKG-KRLVFVTNNSTK-----SRKQYGKKFETLGLTVTEEEIFA-------SSFAAAAYLKSIDFPKDKKVYVVGED-- 67 (257)
Q Consensus 3 ~~~g-~~~~~lTN~s~~-----~~~~~~~~L~~~G~~~~~~~i~t-------s~~~~~~~l~~~~~~~~~~v~vlg~~-- 67 (257)
.+.| +++.|++++... ..+.+.+.|++.|+++..+.++. ....+..+|+++ +.-.+++..++
T Consensus 178 ~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~ai~~~nd~~ 254 (342)
T PRK10014 178 IRNGHQRIAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSEWVLECTSSQKQAAEAITALLRHN---PTISAVVCYNETI 254 (342)
T ss_pred HHCCCCEEEEEcCCcccccHHHHHHHHHHHHHHcCCCCCcceEecCCCChHHHHHHHHHHHcCC---CCCCEEEECCcHH
Confidence 3444 468888653321 22457777888998865544432 123445566543 11234444443
Q ss_pred --HHHHHHHHcCCee
Q 025117 68 --GILKELELAGFQY 80 (257)
Q Consensus 68 --~~~~~l~~~g~~~ 80 (257)
++.+.+++.|+++
T Consensus 255 A~g~~~~l~~~g~~v 269 (342)
T PRK10014 255 AMGAWFGLLRAGRQS 269 (342)
T ss_pred HHHHHHHHHHcCCCC
Confidence 3456778888765
No 303
>PLN02954 phosphoserine phosphatase
Probab=36.72 E-value=36 Score=27.58 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=20.7
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCC
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 33 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~ 33 (257)
|+++|.++.++||+.. ..+...|+.+|++
T Consensus 96 l~~~g~~~~IvS~~~~---~~i~~~l~~~gi~ 124 (224)
T PLN02954 96 LRARGTDVYLVSGGFR---QMIAPVAAILGIP 124 (224)
T ss_pred HHHCCCEEEEECCCcH---HHHHHHHHHhCCC
Confidence 6788999999999543 3344446678885
No 304
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=36.68 E-value=74 Score=28.72 Aligned_cols=29 Identities=21% Similarity=0.384 Sum_probs=22.4
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhC
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETL 30 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~ 30 (257)
|-+.|+.|-+||=.+=-.++.|.++|..+
T Consensus 178 LL~~gv~VgIVTAAGY~~a~kY~~RL~GL 206 (408)
T PF06437_consen 178 LLRRGVKVGIVTAAGYPGAEKYEERLHGL 206 (408)
T ss_pred HHhcCCeEEEEeCCCCCChHHHHHHHHHH
Confidence 55789999999986666678888888753
No 305
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=36.56 E-value=31 Score=29.34 Aligned_cols=46 Identities=26% Similarity=0.209 Sum_probs=36.8
Q ss_pred cccCCCcHH----HHHHHHHHhCCCCC--cEEEEcCChhhHHHHHHHcCCeE
Q 025117 172 LVVGKPSTF----MMDYLANKFGIQKS--QICMVGDRLDTDILFGQNGGCKT 217 (257)
Q Consensus 172 ~~~gKP~p~----~~~~~~~~~~~~~~--~~~~IGD~~~~Di~~A~~aG~~t 217 (257)
.++-||+|. +|..-++.+|++|. ++-||.|+=++--.||.-.|+..
T Consensus 78 QVilKPsP~niQelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWEV 129 (293)
T TIGR00388 78 QVVIKPSPDNIQELYLDSLRALGIDPTEHDIRFVEDNWENPTLGAWGLGWEV 129 (293)
T ss_pred EEEECCCCccHHHHHHHHHHHhCCCccccCeeEeecCCCCCcccccccccEE
Confidence 346799884 56666888899864 69999999888899999998753
No 306
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=36.12 E-value=41 Score=21.35 Aligned_cols=37 Identities=5% Similarity=0.228 Sum_probs=30.3
Q ss_pred cEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHH
Q 025117 8 RLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSF 44 (257)
Q Consensus 8 ~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~ 44 (257)
++++++|=+...-..+...+++.|+++...-++|+..
T Consensus 2 ~~ll~~g~~~~el~~~l~~~r~~~~~~~~kAvlT~tN 38 (58)
T PF12646_consen 2 EFLLFSGFSGEELDKFLDALRKAGIPIPLKAVLTPTN 38 (58)
T ss_pred CEEEECCCCHHHHHHHHHHHHHcCCCcceEEEECCCc
Confidence 5788999888888899999999999877777776654
No 307
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=36.05 E-value=26 Score=29.24 Aligned_cols=29 Identities=14% Similarity=-0.192 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCcc
Q 025117 117 NYYKVQYGTLCIRENPGCLFIATNRDAVT 145 (257)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~ 145 (257)
.-+....+++.+++.+..++++|+.+...
T Consensus 121 aip~al~l~~~l~~~G~~Vf~lTGR~e~~ 149 (229)
T TIGR01675 121 ALPEGLKLYQKIIELGIKIFLLSGRWEEL 149 (229)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCChHH
Confidence 34556667777776444588889987643
No 308
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=35.81 E-value=1.7e+02 Score=21.09 Aligned_cols=77 Identities=16% Similarity=0.020 Sum_probs=40.9
Q ss_pred ChhccCCcEEEEeCCCCcCHHHHHHHHHhCCCC-----CCCCceechHHHHHHHHHhcCCCCCCEEEEEcCHHH--HHHH
Q 025117 1 MLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT-----VTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDGI--LKEL 73 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~-----~~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~~~~--~~~l 73 (257)
+|+..|..++++- +..+.+++.+.+.+...+ ....+-+.....+.+.+++.. +++-++++-|.... .+.+
T Consensus 22 ~l~~~G~~V~~lg--~~~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~-~~~~~i~vGG~~~~~~~~~~ 98 (119)
T cd02067 22 ALRDAGFEVIDLG--VDVPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAG-LDDIPVLVGGAIVTRDFKFL 98 (119)
T ss_pred HHHHCCCEEEECC--CCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcC-CCCCeEEEECCCCChhHHHH
Confidence 3678898887664 446778888888775554 222222233344445555542 11233444443322 2356
Q ss_pred HHcCCee
Q 025117 74 ELAGFQY 80 (257)
Q Consensus 74 ~~~g~~~ 80 (257)
++.|+..
T Consensus 99 ~~~G~D~ 105 (119)
T cd02067 99 KEIGVDA 105 (119)
T ss_pred HHcCCeE
Confidence 6667543
No 309
>PRK07475 hypothetical protein; Provisional
Probab=35.80 E-value=2.6e+02 Score=23.40 Aligned_cols=69 Identities=19% Similarity=0.319 Sum_probs=44.3
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHh-CCCCCCCCceechHHHHHHHHHhcCCCCCCEEEEEcCHH---HHHHHHHcC
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFET-LGLTVTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDG---ILKELELAG 77 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~-~G~~~~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~~~---~~~~l~~~g 77 (257)
|.+.|..++.++= -+.+-+.++|++ .+++ +++|..+....+++.. +++++|.+++..+ ..+.|++.|
T Consensus 74 L~~~G~d~I~~~C---gt~~~~~~~l~~~~~VP-----v~~ss~~~v~~l~~~~-~~~~kIGILtt~~t~l~~~~l~~~G 144 (245)
T PRK07475 74 LEAEGVRAITTSC---GFLALFQRELAAALGVP-----VATSSLLQVPLIQALL-PAGQKVGILTADASSLTPAHLLAVG 144 (245)
T ss_pred HHHcCCCEEEech---HHHHHHHHHHHHHcCCC-----EeccHHHHHHHHHHhc-cCCCeEEEEeCCchhhhHHHHHhCC
Confidence 4455666554443 234567777764 7776 4467777777777642 2357899998764 356678888
Q ss_pred Ce
Q 025117 78 FQ 79 (257)
Q Consensus 78 ~~ 79 (257)
+.
T Consensus 145 i~ 146 (245)
T PRK07475 145 VP 146 (245)
T ss_pred CC
Confidence 86
No 310
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=35.63 E-value=48 Score=21.94 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=16.5
Q ss_pred HHHHHHhCCCCCcEEEEcCC
Q 025117 183 DYLANKFGIQKSQICMVGDR 202 (257)
Q Consensus 183 ~~~~~~~~~~~~~~~~IGD~ 202 (257)
..+|++.|+.+.+++.|||-
T Consensus 46 ~~~L~~~G~~~GD~V~Ig~~ 65 (69)
T TIGR03595 46 EDALRKAGAKDGDTVRIGDF 65 (69)
T ss_pred HHHHHHcCCCCCCEEEEccE
Confidence 46677788899999999984
No 311
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=35.59 E-value=29 Score=31.45 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=22.5
Q ss_pred cEEEEeCCCCc-CHHHHHHHHHhCCCCC
Q 025117 8 RLVFVTNNSTK-SRKQYGKKFETLGLTV 34 (257)
Q Consensus 8 ~~~~lTN~s~~-~~~~~~~~L~~~G~~~ 34 (257)
+|+|+||.|+- .-..+++.|...|..+
T Consensus 201 ~VR~itN~SSG~~g~~~a~~~~~~Ga~V 228 (390)
T TIGR00521 201 PVRFISNLSSGKMGLALAEAAYKRGADV 228 (390)
T ss_pred ceeeecCCCcchHHHHHHHHHHHCCCEE
Confidence 58899998886 6688999999999874
No 312
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=35.43 E-value=84 Score=30.77 Aligned_cols=44 Identities=18% Similarity=0.226 Sum_probs=36.1
Q ss_pred CcHHHHHHHHHHhCCCCCcEEEE--cCChhhHHHHHHHcCCeEEEEcc
Q 025117 177 PSTFMMDYLANKFGIQKSQICMV--GDRLDTDILFGQNGGCKTLLVLS 222 (257)
Q Consensus 177 P~p~~~~~~~~~~~~~~~~~~~I--GD~~~~Di~~A~~aG~~ti~V~~ 222 (257)
.+-...+.+++.++++.++++.| ||+ ..|+.+=+.+|. ++.+..
T Consensus 613 dKG~AL~~L~e~~gI~~~eViafalGDs-~NDisMLe~Ag~-gVAM~~ 658 (694)
T PRK14502 613 DKGKAIKILNELFRLNFGNIHTFGLGDS-ENDYSMLETVDS-PILVQR 658 (694)
T ss_pred CHHHHHHHHHHHhCCCccceEEEEcCCc-HhhHHHHHhCCc-eEEEcC
Confidence 34567788889999988998888 999 799999999997 555543
No 313
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=35.20 E-value=1.7e+02 Score=21.03 Aligned_cols=57 Identities=14% Similarity=0.173 Sum_probs=32.3
Q ss_pred EeCCCCcCHHHHHHHHHhCCCCCCCCceechHHHHHHHHHhcCCCCCCEEEEE---cCHHHHHHHHH
Q 025117 12 VTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDFPKDKKVYVV---GEDGILKELEL 75 (257)
Q Consensus 12 lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~~~~~~l~~~~~~~~~~v~vl---g~~~~~~~l~~ 75 (257)
+.+........++++|..+|+.+- -|+ -++.||++++++ -..+.-+ |.+.+.+.+++
T Consensus 6 v~d~~K~~~~~~a~~l~~~G~~i~----AT~--gTa~~L~~~Gi~-~~~v~~~~~~g~~~i~~~i~~ 65 (112)
T cd00532 6 VSDHVKAMLVDLAPKLSSDGFPLF----ATG--GTSRVLADAGIP-VRAVSKRHEDGEPTVDAAIAE 65 (112)
T ss_pred EEcccHHHHHHHHHHHHHCCCEEE----ECc--HHHHHHHHcCCc-eEEEEecCCCCCcHHHHHHhC
Confidence 444343445788889999998752 133 357888887653 1223222 33445555544
No 314
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=34.61 E-value=61 Score=22.46 Aligned_cols=28 Identities=4% Similarity=0.124 Sum_probs=19.3
Q ss_pred cCCcEEEEeCCCCcCHHHHHHHHHhCCCC
Q 025117 5 KGKRLVFVTNNSTKSRKQYGKKFETLGLT 33 (257)
Q Consensus 5 ~g~~~~~lTN~s~~~~~~~~~~L~~~G~~ 33 (257)
.+++++++.+++.+ ....+..|+++|++
T Consensus 60 ~~~~ivv~C~~G~r-s~~aa~~L~~~G~~ 87 (100)
T cd01523 60 DDQEVTVICAKEGS-SQFVAELLAERGYD 87 (100)
T ss_pred CCCeEEEEcCCCCc-HHHHHHHHHHcCce
Confidence 45678888875544 45666778888885
No 315
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=34.26 E-value=1.4e+02 Score=28.52 Aligned_cols=73 Identities=23% Similarity=0.293 Sum_probs=41.2
Q ss_pred ChhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHH-HHHHHHHhcCCCCCCEEEEEcCH-HHHHHHHHcCC
Q 025117 1 MLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSF-AAAAYLKSIDFPKDKKVYVVGED-GILKELELAGF 78 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~-~~~~~l~~~~~~~~~~v~vlg~~-~~~~~l~~~g~ 78 (257)
.|+++|+++.++||.... .....++++|+++-. ++.-..+ .....+++ +++++.++|-. .....++.+|+
T Consensus 416 ~Lk~~Gi~v~ilSgd~~~---~a~~ia~~lgi~~~~-~~~p~~K~~~v~~l~~----~~~~v~~VGDg~nD~~al~~A~v 487 (562)
T TIGR01511 416 ALKRRGIEPVMLTGDNRK---TAKAVAKELGINVRA-EVLPDDKAALIKELQE----KGRVVAMVGDGINDAPALAQADV 487 (562)
T ss_pred HHHHcCCeEEEEcCCCHH---HHHHHHHHcCCcEEc-cCChHHHHHHHHHHHH----cCCEEEEEeCCCccHHHHhhCCE
Confidence 378899999999996543 333344567886211 1111111 12222222 23678888844 56677888886
Q ss_pred eee
Q 025117 79 QYL 81 (257)
Q Consensus 79 ~~~ 81 (257)
-+.
T Consensus 488 gia 490 (562)
T TIGR01511 488 GIA 490 (562)
T ss_pred EEE
Confidence 553
No 316
>PRK06207 aspartate aminotransferase; Provisional
Probab=34.19 E-value=3.1e+02 Score=24.59 Aligned_cols=67 Identities=16% Similarity=0.225 Sum_probs=40.1
Q ss_pred CCcCHHHHHHHHHh-CCCCCCC-Ccee-chHHHHHHH-HHhcCCCCCCEEEEEcCH--HHHHHHHHcCCeeeC
Q 025117 16 STKSRKQYGKKFET-LGLTVTE-EEIF-ASSFAAAAY-LKSIDFPKDKKVYVVGED--GILKELELAGFQYLG 82 (257)
Q Consensus 16 s~~~~~~~~~~L~~-~G~~~~~-~~i~-ts~~~~~~~-l~~~~~~~~~~v~vlg~~--~~~~~l~~~g~~~~~ 82 (257)
....++.+++.+++ .|+++++ ++|+ |+|...+-+ +-+.-..+|.+|.+.... .....++..|.+++.
T Consensus 80 ~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~g~~v~~ 152 (405)
T PRK06207 80 DADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVP 152 (405)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEE
Confidence 44457788888876 5998887 7755 554432222 222223456777775433 456677778877653
No 317
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=33.87 E-value=35 Score=22.21 Aligned_cols=24 Identities=50% Similarity=0.616 Sum_probs=13.4
Q ss_pred HHHHHHhCCCCCcEEEEcCChhhHHHHHH
Q 025117 183 DYLANKFGIQKSQICMVGDRLDTDILFGQ 211 (257)
Q Consensus 183 ~~~~~~~~~~~~~~~~IGD~~~~Di~~A~ 211 (257)
+..++++|+ .+++||+ .+||+...
T Consensus 8 qQLLK~fG~----~IY~gdr-~~DielM~ 31 (62)
T PF06014_consen 8 QQLLKKFGI----IIYVGDR-LWDIELME 31 (62)
T ss_dssp HHHHHTTS---------S-H-HHHHHHHH
T ss_pred HHHHHHCCE----EEEeCCh-HHHHHHHH
Confidence 456777886 8999999 59998653
No 318
>PLN02368 alanine transaminase
Probab=33.82 E-value=2.8e+02 Score=25.17 Aligned_cols=64 Identities=19% Similarity=0.136 Sum_probs=35.7
Q ss_pred cCHHHHHHHHHh-CCCCCCCCcee-chHHHHHHH--HHhcCCCCCCEEEEEcC--HHHHHHHHHcCCeee
Q 025117 18 KSRKQYGKKFET-LGLTVTEEEIF-ASSFAAAAY--LKSIDFPKDKKVYVVGE--DGILKELELAGFQYL 81 (257)
Q Consensus 18 ~~~~~~~~~L~~-~G~~~~~~~i~-ts~~~~~~~--l~~~~~~~~~~v~vlg~--~~~~~~l~~~g~~~~ 81 (257)
..++.+++.+.+ .|+++++++|+ |+|..-+-+ +...-..+|..|.+... ......++..|.+++
T Consensus 111 ~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~~~~~~~g~~~v 180 (407)
T PLN02368 111 GVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYSATISLLGGTLV 180 (407)
T ss_pred HHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHHHHHHHcCCEEE
Confidence 466778887765 48888888874 554332221 22211124566666543 245666667776654
No 319
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=33.66 E-value=2.4e+02 Score=25.24 Aligned_cols=67 Identities=12% Similarity=0.171 Sum_probs=40.3
Q ss_pred cEEEEe-CCCCcCHHHHHHHHHhCCCCCCC--CceechHHHHHHHHHhcCCCCCCEEEEEcCHHHHHHHHHcCC
Q 025117 8 RLVFVT-NNSTKSRKQYGKKFETLGLTVTE--EEIFASSFAAAAYLKSIDFPKDKKVYVVGEDGILKELELAGF 78 (257)
Q Consensus 8 ~~~~lT-N~s~~~~~~~~~~L~~~G~~~~~--~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~~~~~~~l~~~g~ 78 (257)
+.+++| +..+....+..++|...|+.+-. +.-+ ....+...|.+.+. .++++-|...+...|-+.|+
T Consensus 232 ~~ii~t~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~-dl~~~l~~L~~~gi---~svlVEGG~~l~~sfl~~~L 301 (360)
T PRK14719 232 KTVIATTTPISDEKEEKIRKLKEMGITVLQAGVQKV-DLRKIMNEIYKMGI---NKILLEGGGTLNWGMFKENL 301 (360)
T ss_pred CEEEEEcccccccchHHHHHHHhcCcEEEEcCCCCC-CHHHHHHHHHhCCC---CEEEEEeCHHHHHHHHHCCC
Confidence 455555 43322224455678888876311 1111 22345566666554 68999999999999988774
No 320
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=33.44 E-value=32 Score=31.31 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=21.9
Q ss_pred cEEEEeCCCCc-CHHHHHHHHHhCCCCC
Q 025117 8 RLVFVTNNSTK-SRKQYGKKFETLGLTV 34 (257)
Q Consensus 8 ~~~~lTN~s~~-~~~~~~~~L~~~G~~~ 34 (257)
+|+|+||.|+- .-..+++.|...|.++
T Consensus 204 ~VR~isN~SSG~~G~aiA~~l~~~Ga~V 231 (399)
T PRK05579 204 PVRYITNRSSGKMGYALARAAARRGADV 231 (399)
T ss_pred ceeeeccCCcchHHHHHHHHHHHCCCEE
Confidence 58889998877 4788888888888765
No 321
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=33.18 E-value=1.4e+02 Score=25.41 Aligned_cols=29 Identities=7% Similarity=0.101 Sum_probs=21.9
Q ss_pred cCCcEEEEeCCCCcCHHHHHHHHHhCCCCCC
Q 025117 5 KGKRLVFVTNNSTKSRKQYGKKFETLGLTVT 35 (257)
Q Consensus 5 ~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~ 35 (257)
.|++++++..+.++ +.+.+.|++.|+.+.
T Consensus 137 ~g~~vLi~rg~~gr--~~L~~~L~~~G~~V~ 165 (266)
T PRK08811 137 PLQAVGLITAPGGR--GLLAPTLQQRGARIL 165 (266)
T ss_pred CCCEEEEEeCCCcH--HHHHHHHHHCCCEEe
Confidence 57888877765544 789999999997654
No 322
>PTZ00377 alanine aminotransferase; Provisional
Probab=33.17 E-value=2.9e+02 Score=25.49 Aligned_cols=68 Identities=15% Similarity=0.080 Sum_probs=40.9
Q ss_pred CCCcCHHHHHHHHHh-CCCCCCCCcee-chHHHHHHHH-HhcCC-CCCCEEEEEcC--HHHHHHHHHcCCeeeC
Q 025117 15 NSTKSRKQYGKKFET-LGLTVTEEEIF-ASSFAAAAYL-KSIDF-PKDKKVYVVGE--DGILKELELAGFQYLG 82 (257)
Q Consensus 15 ~s~~~~~~~~~~L~~-~G~~~~~~~i~-ts~~~~~~~l-~~~~~-~~~~~v~vlg~--~~~~~~l~~~g~~~~~ 82 (257)
+....++.+++.+.+ .|+++++++|+ |+|..-+-++ -+.-. .++..|++... ......++..|.+++.
T Consensus 116 G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~y~~~~~~~g~~~v~ 189 (481)
T PTZ00377 116 GYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYSAAITLLGGKQVP 189 (481)
T ss_pred CCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchhHHHHHHHcCCEEEE
Confidence 344567888888875 79999998875 5554332222 22112 35666766532 3456667777876654
No 323
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=33.14 E-value=3.4e+02 Score=23.94 Aligned_cols=156 Identities=13% Similarity=0.054 Sum_probs=71.4
Q ss_pred echHHHHHHHHHhcCCCCCCEEEEEcCHHHHHHHHHc--CCeeeCCCCCCCCccccCCCcccCCCCCccEEEEeccC--C
Q 025117 40 FASSFAAAAYLKSIDFPKDKKVYVVGEDGILKELELA--GFQYLGGPEDGGKKIELKPGFLMEHDKDVGAVVVGFDR--Y 115 (257)
Q Consensus 40 ~ts~~~~~~~l~~~~~~~~~~v~vlg~~~~~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aVv~~~d~--~ 115 (257)
|++...+++.|.+.+. +..+|+++|...+-..+... .-.... ...+ .. ...-..+++-+.+ .
T Consensus 127 f~~t~~~~~~L~~~G~-~~~rI~~vG~~~~D~l~~~~~~~~~~~~-------~~~i-----~~-~~~~~~iLvt~H~~t~ 192 (346)
T PF02350_consen 127 FAPTEEARERLLQEGE-PPERIFVVGNPGIDALLQNKEEIEEKYK-------NSGI-----LQ-DAPKPYILVTLHPVTN 192 (346)
T ss_dssp EESSHHHHHHHHHTT---GGGEEE---HHHHHHHHHHHTTCC-HH-------HHHH-----HH-CTTSEEEEEE-S-CCC
T ss_pred ccCCHHHHHHHHhcCC-CCCeEEEEChHHHHHHHHhHHHHhhhhh-------hHHH-----Hh-ccCCCEEEEEeCcchh
Confidence 4666777788877665 34689999987764433221 100000 0000 00 0112344444421 2
Q ss_pred CC----HHHHHHHHHHHHcCCCceEEEecC--CCccccCCCcccccCchHHHHHHhccCCCccccCCC-cHHHHHHHHHH
Q 025117 116 FN----YYKVQYGTLCIRENPGCLFIATNR--DAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKP-STFMMDYLANK 188 (257)
Q Consensus 116 ~~----~~~~~~~~~~l~~~~~~~~i~tn~--d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP-~p~~~~~~~~~ 188 (257)
.. ...+..++..|.+..+..+|++=+ |... ..+.+.+... . ...+-+| ...-|..+++.
T Consensus 193 ~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~-----------~~i~~~l~~~-~--~v~~~~~l~~~~~l~ll~~ 258 (346)
T PF02350_consen 193 EDNPERLEQILEALKALAERQNVPVIFPLHNNPRGS-----------DIIIEKLKKY-D--NVRLIEPLGYEEYLSLLKN 258 (346)
T ss_dssp CTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHHH-----------HHHHHHHTT--T--TEEEE----HHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchHH-----------HHHHHHhccc-C--CEEEECCCCHHHHHHHHhc
Confidence 22 346666777766544665665433 3211 1122333222 1 2223344 33345555554
Q ss_pred hCCCCCcEEEEcCChhhHHH-HHHHcCCeEEEEccCCCChhhhc
Q 025117 189 FGIQKSQICMVGDRLDTDIL-FGQNGGCKTLLVLSGVTSLSMLQ 231 (257)
Q Consensus 189 ~~~~~~~~~~IGD~~~~Di~-~A~~aG~~ti~V~~G~~~~~~~~ 231 (257)
. .+||||| - .|+ -|--.|..++-++......+...
T Consensus 259 a------~~vvgdS-s-GI~eEa~~lg~P~v~iR~~geRqe~r~ 294 (346)
T PF02350_consen 259 A------DLVVGDS-S-GIQEEAPSLGKPVVNIRDSGERQEGRE 294 (346)
T ss_dssp E------SEEEESS-H-HHHHHGGGGT--EEECSSS-S-HHHHH
T ss_pred c------eEEEEcC-c-cHHHHHHHhCCeEEEecCCCCCHHHHh
Confidence 4 4789999 5 888 99999999999966555555443
No 324
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=32.95 E-value=2.1e+02 Score=21.48 Aligned_cols=76 Identities=11% Similarity=0.142 Sum_probs=48.3
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCC-CCCCceechHHH----HHHHHHhcCCCCCCEEEEEcCH---------
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT-VTEEEIFASSFA----AAAYLKSIDFPKDKKVYVVGED--------- 67 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~-~~~~~i~ts~~~----~~~~l~~~~~~~~~~v~vlg~~--------- 67 (257)
|+++|..|+-+=. ..+++++.+...+.+-+ +.....+|++.. +.+.|++.+.. +-+ .++|..
T Consensus 23 L~~~GfeVidLG~--~v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~-~v~-vivGG~~~i~~~d~~ 98 (128)
T cd02072 23 FTEAGFNVVNLGV--LSPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLK-DIL-LYVGGNLVVGKQDFE 98 (128)
T ss_pred HHHCCCEEEECCC--CCCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCC-CCe-EEEECCCCCChhhhH
Confidence 6788888776643 47789999998888777 455666666553 44555555442 223 344432
Q ss_pred HHHHHHHHcCCeee
Q 025117 68 GILKELELAGFQYL 81 (257)
Q Consensus 68 ~~~~~l~~~g~~~~ 81 (257)
..++.|+++|+..+
T Consensus 99 ~~~~~L~~~Gv~~v 112 (128)
T cd02072 99 DVEKRFKEMGFDRV 112 (128)
T ss_pred HHHHHHHHcCCCEE
Confidence 23466899998654
No 325
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=32.57 E-value=90 Score=26.38 Aligned_cols=8 Identities=25% Similarity=0.301 Sum_probs=3.8
Q ss_pred cEEEEcCC
Q 025117 195 QICMVGDR 202 (257)
Q Consensus 195 ~~~~IGD~ 202 (257)
.+-|+|=.
T Consensus 202 ~I~f~G~~ 209 (252)
T PF11019_consen 202 GIDFIGFH 209 (252)
T ss_pred CCcEEEEE
Confidence 34455544
No 326
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=32.35 E-value=99 Score=27.78 Aligned_cols=77 Identities=29% Similarity=0.388 Sum_probs=45.0
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhC-----------CCCCCCCceechHH------HHHHHHHhcCCCCC-CEEEE
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETL-----------GLTVTEEEIFASSF------AAAAYLKSIDFPKD-KKVYV 63 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~-----------G~~~~~~~i~ts~~------~~~~~l~~~~~~~~-~~v~v 63 (257)
+++.|.+++|=+= ++-+|+++...+++. |++.++.=|+|.+. .+..|+.++ .| +|+|+
T Consensus 64 i~~d~V~~ifGc~-TSasRKaVlPvvE~~~~LL~Yp~~YEG~E~S~nviYtGa~PNQ~~~pl~~~~~~~---~G~~r~~l 139 (363)
T PF13433_consen 64 IREDGVRAIFGCY-TSASRKAVLPVVERHNALLFYPTQYEGFECSPNVIYTGAAPNQQLLPLIDYLLEN---FGAKRFYL 139 (363)
T ss_dssp HHHS---EEEE---SHHHHHHHHHHHHHCT-EEEE-S--------TTEEE-S--GGGTHHHHHHHHHHH---S--SEEEE
T ss_pred HHhCCccEEEecc-hhhhHHHHHHHHHhcCceEEeccccccccCCCceEEcCCCchhhHHHHHHHHHhc---cCCceEEE
Confidence 3567778777666 678889999988874 44444444554432 366777654 24 89999
Q ss_pred EcCHH---------HHHHHHHcCCeeeC
Q 025117 64 VGEDG---------ILKELELAGFQYLG 82 (257)
Q Consensus 64 lg~~~---------~~~~l~~~g~~~~~ 82 (257)
+|++. +++.++..|.++++
T Consensus 140 vGSdYv~pre~Nri~r~~l~~~Ggevvg 167 (363)
T PF13433_consen 140 VGSDYVYPRESNRIIRDLLEARGGEVVG 167 (363)
T ss_dssp EEESSHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred ecCCccchHHHHHHHHHHHHHcCCEEEE
Confidence 99974 47778888888774
No 327
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=32.30 E-value=80 Score=27.34 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=40.2
Q ss_pred CCCcHHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHH------HcCCeEEEEccCCCC
Q 025117 175 GKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQ------NGGCKTLLVLSGVTS 226 (257)
Q Consensus 175 gKP~p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~------~aG~~ti~V~~G~~~ 226 (257)
.=|+|+.|...++++|+..+++++|=|+ ..-..+++ -+|..-+.|+.|...
T Consensus 71 ~lp~~e~fa~~~~~~GI~~d~tVVvYdd-~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~ 127 (285)
T COG2897 71 MLPSPEQFAKLLGELGIRNDDTVVVYDD-GGGFFAARAWWLLRYLGHENVRILDGGLP 127 (285)
T ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEECC-CCCeehHHHHHHHHHcCCCceEEecCCHH
Confidence 5689999999999999999998888776 34444443 369999999987653
No 328
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=32.03 E-value=24 Score=28.38 Aligned_cols=27 Identities=22% Similarity=0.275 Sum_probs=18.3
Q ss_pred cEEEEeCCCCc-CHHHHHHHHHhCCCCC
Q 025117 8 RLVFVTNNSTK-SRKQYGKKFETLGLTV 34 (257)
Q Consensus 8 ~~~~lTN~s~~-~~~~~~~~L~~~G~~~ 34 (257)
+|+|+||.|+- .-..+++.+..+|.++
T Consensus 19 ~VR~ItN~SSG~~G~~lA~~~~~~Ga~V 46 (185)
T PF04127_consen 19 PVRFITNRSSGKMGAALAEEAARRGAEV 46 (185)
T ss_dssp SSEEEEES--SHHHHHHHHHHHHTT-EE
T ss_pred CceEecCCCcCHHHHHHHHHHHHCCCEE
Confidence 58899997654 4477888888888764
No 329
>PF01872 RibD_C: RibD C-terminal domain; InterPro: IPR002734 This domain is found in the C terminus of the bifunctional deaminase-reductase of Escherichia coli, Bacillus subtilis and other bacteria in combination with IPR002125 from INTERPRO that catalyses the second and third steps in the biosynthesis of riboflavin, i.e., the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (deaminase) and the subsequent reduction of the ribosyl side chain (reductase) []. The domain is also present in some HTP reductases from archaea and fungi.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0009231 riboflavin biosynthetic process, 0055114 oxidation-reduction process; PDB: 3KY8_B 3KGY_B 2GD9_B 3JTW_B 2XW7_B 2D5N_B 2B3Z_A 3EX8_B 2AZN_A 2P4G_A ....
Probab=32.01 E-value=2.1e+02 Score=22.67 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=22.6
Q ss_pred HHHHHHHhcCCCCCCEEEEEcCHHHHHHHHHcCC
Q 025117 45 AAAAYLKSIDFPKDKKVYVVGEDGILKELELAGF 78 (257)
Q Consensus 45 ~~~~~l~~~~~~~~~~v~vlg~~~~~~~l~~~g~ 78 (257)
.+...|++.+ .+.+++.|+..+...|-+.|+
T Consensus 125 ~~l~~L~~~g---~~~i~v~GG~~l~~~~l~~gL 155 (200)
T PF01872_consen 125 EALRRLKERG---GKDILVEGGGSLNGSFLRAGL 155 (200)
T ss_dssp HHHHHHHHTT---TSEEEEEEHHHHHHHHHHTT-
T ss_pred HHHHHHHhcC---CCEEEEechHHHHHHHHhCCC
Confidence 3445566543 478999999999999888774
No 330
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=31.86 E-value=87 Score=26.95 Aligned_cols=49 Identities=12% Similarity=0.033 Sum_probs=30.8
Q ss_pred ChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHHHHHH
Q 025117 202 RLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKA 254 (257)
Q Consensus 202 ~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~~~l~ 254 (257)
.+..++..++++|++.+++.+|-.....-. ...+.-+++.-.+|++++.
T Consensus 75 ~l~~~L~~~~~~Gi~niLal~GD~p~~~~~----~~~~~~~f~~a~~Li~~i~ 123 (281)
T TIGR00677 75 MIDDALERAYSNGIQNILALRGDPPHIGDD----WTEVEGGFQYAVDLVKYIR 123 (281)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCC----CCCCCCCCcCHHHHHHHHH
Confidence 367788999999999999999965422110 0112234555566666654
No 331
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=31.71 E-value=2.2e+02 Score=23.42 Aligned_cols=56 Identities=14% Similarity=0.129 Sum_probs=31.2
Q ss_pred HHHHHHHhCCCC-CCCCceechHHHHHHHHHhcCCCCCCEEEEEcC----HHHHHHHHHcCCee
Q 025117 22 QYGKKFETLGLT-VTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGE----DGILKELELAGFQY 80 (257)
Q Consensus 22 ~~~~~L~~~G~~-~~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~----~~~~~~l~~~g~~~ 80 (257)
.-++.|+++|+. +-+. -.++... ++++... ..++++++++.+ +.+.+.|++.|+.+
T Consensus 84 ~Ta~~l~~~G~~~~~~~-~~~~e~L-~~~~~~~-~~~~~~vL~~rg~~~r~~l~~~L~~~G~~v 144 (240)
T PRK09189 84 ATAEAARELGFRHVIEG-GGDGVRL-AETVAAA-LAPTARLLYLAGRPRAPVFEDRLAAAGIPF 144 (240)
T ss_pred HHHHHHHHcCCCCCcCC-CCCHHHH-HHHHHHh-cCCCCcEEEeccCcccchhHHHHHhCCCee
Confidence 345667788886 3222 2344443 4445432 124567777643 35677788888765
No 332
>PTZ00174 phosphomannomutase; Provisional
Probab=31.60 E-value=62 Score=26.99 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=28.9
Q ss_pred HHHHHHHHHhCCCCCcEEEEcC----ChhhHHHHHHHcCCeEEEEc
Q 025117 180 FMMDYLANKFGIQKSQICMVGD----RLDTDILFGQNGGCKTLLVL 221 (257)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~IGD----~~~~Di~~A~~aG~~ti~V~ 221 (257)
...+.+++. +++++.||| + ..|+.+=+.+|..++.|.
T Consensus 191 ~al~~L~~~----~~eviafGD~~~~~-~NDieMl~~~~~~g~~v~ 231 (247)
T PTZ00174 191 YCLRHLEND----FKEIHFFGDKTFEG-GNDYEIYNDPRTIGHSVK 231 (247)
T ss_pred HHHHHHHhh----hhhEEEEcccCCCC-CCcHhhhhcCCCceEEeC
Confidence 344444444 589999999 7 699999998888877777
No 333
>TIGR00623 sula cell division inhibitor SulA. All proteins in this family for which the functions are known are cell division inhibitors. In E. coli, SulA is one of the SOS regulated genes.
Probab=31.57 E-value=62 Score=25.61 Aligned_cols=53 Identities=8% Similarity=0.119 Sum_probs=39.8
Q ss_pred CCCccccCCCcHHHHHHHHHHhCCCCCcEEEE-----cCChhhHHHHHHHcCCeEEEEcc
Q 025117 168 QREPLVVGKPSTFMMDYLANKFGIQKSQICMV-----GDRLDTDILFGQNGGCKTLLVLS 222 (257)
Q Consensus 168 ~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~~I-----GD~~~~Di~~A~~aG~~ti~V~~ 222 (257)
++...+++-|.. .+...+...|++.++++.| .|++ +-++-|-+.|--++.+.|
T Consensus 60 ~Rwlv~IaPP~~-~~~~~L~~~Gl~l~rvlli~~~~~~d~l-wa~EQaLrSG~c~aVL~W 117 (168)
T TIGR00623 60 SRWQLWLTPQQK-LSKEWVQSSGLPLTKVMQISQLSPCNTV-ESMIRALRTGNYSVVIGW 117 (168)
T ss_pred CceEEEECCCCc-cCHHHHHHcCCChhHEEEEecCCchhHH-HHHHHHHHhCCCcEEEec
Confidence 334455665555 6667778889999999888 5774 778888888988888888
No 334
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=31.43 E-value=2e+02 Score=20.79 Aligned_cols=40 Identities=35% Similarity=0.337 Sum_probs=23.6
Q ss_pred CCCccEEEEeccCCCCHHHHHHHHHHHHc-CCCc-eEEEecCC
Q 025117 102 DKDVGAVVVGFDRYFNYYKVQYGTLCIRE-NPGC-LFIATNRD 142 (257)
Q Consensus 102 ~~~~~aVv~~~d~~~~~~~~~~~~~~l~~-~~~~-~~i~tn~d 142 (257)
.+++.+|++.++ .-........+..++. +.++ +|+.++++
T Consensus 36 ~~~i~avvi~~d-~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~ 77 (115)
T PF03709_consen 36 FTDIAAVVISWD-GEEEDEAQELLDKIRERNFGIPVFLLAERD 77 (115)
T ss_dssp TTTEEEEEEECH-HHHHHHHHHHHHHHHHHSTT-EEEEEESCC
T ss_pred CCCeeEEEEEcc-cccchhHHHHHHHHHHhCCCCCEEEEecCC
Confidence 578999999987 2223334455555554 3444 56667755
No 335
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=31.30 E-value=2e+02 Score=25.32 Aligned_cols=76 Identities=13% Similarity=0.170 Sum_probs=44.4
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCC--C-----CCcee------------chHHHHHHHHHhcCCCCCCEEE
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTV--T-----EEEIF------------ASSFAAAAYLKSIDFPKDKKVY 62 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~--~-----~~~i~------------ts~~~~~~~l~~~~~~~~~~v~ 62 (257)
|++.|.++.++||+...-.+.+. +++|++- . .+..+ .-......++++.+.++ ..+.
T Consensus 193 Lk~~G~~~aIvSgg~~~~~~~l~---~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~~lgi~~-~qtI 268 (322)
T PRK11133 193 LQALGWKVAIASGGFTYFADYLR---DKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQEYEIPL-AQTV 268 (322)
T ss_pred HHHcCCEEEEEECCcchhHHHHH---HHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHHHcCCCh-hhEE
Confidence 67899999999997755444333 3467641 0 01122 12234555666656533 4566
Q ss_pred EEc-CHHHHHHHHHcCCeee
Q 025117 63 VVG-EDGILKELELAGFQYL 81 (257)
Q Consensus 63 vlg-~~~~~~~l~~~g~~~~ 81 (257)
.+| +......++.+|+.+.
T Consensus 269 aVGDg~NDl~m~~~AGlgiA 288 (322)
T PRK11133 269 AIGDGANDLPMIKAAGLGIA 288 (322)
T ss_pred EEECCHHHHHHHHHCCCeEE
Confidence 666 4456666788887664
No 336
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=31.23 E-value=1.6e+02 Score=22.13 Aligned_cols=50 Identities=16% Similarity=0.055 Sum_probs=33.4
Q ss_pred CCCcHHHHHHHHHHhCCCCCcEE-EEcCC---hh---hHHHHHHHcCCeEEEEccCC
Q 025117 175 GKPSTFMMDYLANKFGIQKSQIC-MVGDR---LD---TDILFGQNGGCKTLLVLSGV 224 (257)
Q Consensus 175 gKP~p~~~~~~~~~~~~~~~~~~-~IGD~---~~---~Di~~A~~aG~~ti~V~~G~ 224 (257)
.-|+++-|+..++.+|++++..+ +-+++ -. .-.-..+.+|.+.+.+..|.
T Consensus 76 ~~p~~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG 132 (138)
T cd01445 76 MEPSEAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGG 132 (138)
T ss_pred CCCCHHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCC
Confidence 46778899999999999887644 44432 11 11224456788888888774
No 337
>cd00153 RalGDS_RA Ubiquitin domain of RalGDS-like factor (RLF) and related proteins. This CD represents the C-terminal Ras-associating (RA) domain of three closely related guanine-nucleotide exchange factors (GEF's), Ral guanine nucleotide dissociation stimulator (RalGDS), RalGDS-like (RGL), and RalGDS-like factor (RLF). The RalGDS proteins are downstream effectors of the Ras-related protein Ral, providing a mechanism for Ral activation by extracellular signals. The RA domain is structurally similar to ubiquitin and exists in a number of other signalling proteins including AF6, rasfadin, SNX27, CYR1, and STE50.
Probab=30.75 E-value=94 Score=21.62 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=24.1
Q ss_pred CcEEEEeCCCCcCHHHHHHHHHhCCCCCC
Q 025117 7 KRLVFVTNNSTKSRKQYGKKFETLGLTVT 35 (257)
Q Consensus 7 ~~~~~lTN~s~~~~~~~~~~L~~~G~~~~ 35 (257)
++-++||| --++++.+.+.|.++|++-+
T Consensus 18 YKSIllts-qDktP~VI~ral~Khnl~~~ 45 (87)
T cd00153 18 YKSILLTS-QDKAPQVIRRAMEKHNLESE 45 (87)
T ss_pred EEEEEEec-CCcCHHHHHHHHHHhCCCcC
Confidence 56788999 56999999999999999855
No 338
>PRK05380 pyrG CTP synthetase; Validated
Probab=30.52 E-value=1.9e+02 Score=27.47 Aligned_cols=12 Identities=42% Similarity=0.432 Sum_probs=7.7
Q ss_pred HHHHHHHcCCee
Q 025117 69 ILKELELAGFQY 80 (257)
Q Consensus 69 ~~~~l~~~g~~~ 80 (257)
...+|++.|+++
T Consensus 193 sv~~lr~~Gi~p 204 (533)
T PRK05380 193 SVKELRSIGIQP 204 (533)
T ss_pred HHHHHHhCCCCC
Confidence 456677777653
No 339
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=30.14 E-value=1.2e+02 Score=25.69 Aligned_cols=48 Identities=10% Similarity=0.243 Sum_probs=36.2
Q ss_pred CCCcHHHHHHHHHHhCCCCCcEEEEcCCh--hhHHHHHHHcCCeEEEEccCCCC
Q 025117 175 GKPSTFMMDYLANKFGIQKSQICMVGDRL--DTDILFGQNGGCKTLLVLSGVTS 226 (257)
Q Consensus 175 gKP~p~~~~~~~~~~~~~~~~~~~IGD~~--~~Di~~A~~aG~~ti~V~~G~~~ 226 (257)
|--+|+.++.+.+..++ .++++=.+ ..|+.-|.+.|.+.++|.++...
T Consensus 160 Gi~~~~~I~~I~e~~~v----pVI~egGI~tpeda~~AmelGAdgVlV~SAIt~ 209 (248)
T cd04728 160 GLLNPYNLRIIIERADV----PVIVDAGIGTPSDAAQAMELGADAVLLNTAIAK 209 (248)
T ss_pred CCCCHHHHHHHHHhCCC----cEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcC
Confidence 44458888887776443 35555432 58999999999999999999875
No 340
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=29.98 E-value=2.4e+02 Score=26.81 Aligned_cols=75 Identities=21% Similarity=0.275 Sum_probs=42.4
Q ss_pred ChhccC-CcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHHHHHHHHHhcCCCCCCEEEEEcCH-HHHHHHHHcCC
Q 025117 1 MLRSKG-KRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGED-GILKELELAGF 78 (257)
Q Consensus 1 ~L~~~g-~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~~-~~~~~l~~~g~ 78 (257)
.|+++| +++.++||.. +......++++|++---.++....+ ...+++... .+.++.++|.. .....++.+|+
T Consensus 395 ~L~~~g~i~v~ivTgd~---~~~a~~i~~~lgi~~~f~~~~p~~K--~~~v~~l~~-~~~~v~~vGDg~nD~~al~~A~v 468 (556)
T TIGR01525 395 ALKRAGGIKLVMLTGDN---RSAAEAVAAELGIDEVHAELLPEDK--LAIVKELQE-EGGVVAMVGDGINDAPALAAADV 468 (556)
T ss_pred HHHHcCCCeEEEEeCCC---HHHHHHHHHHhCCCeeeccCCHHHH--HHHHHHHHH-cCCEEEEEECChhHHHHHhhCCE
Confidence 378899 9999999954 3444445567888521122221111 123332211 23577788743 56677788886
Q ss_pred eee
Q 025117 79 QYL 81 (257)
Q Consensus 79 ~~~ 81 (257)
-+.
T Consensus 469 gia 471 (556)
T TIGR01525 469 GIA 471 (556)
T ss_pred eEE
Confidence 554
No 341
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=29.98 E-value=4e+02 Score=23.72 Aligned_cols=57 Identities=19% Similarity=0.124 Sum_probs=33.2
Q ss_pred HHHHHhCCCCCCC-CceechHHHHHHHHHhcCCCCCCEEEEEcC---------HHHHHHHHHcCCeeeC
Q 025117 24 GKKFETLGLTVTE-EEIFASSFAAAAYLKSIDFPKDKKVYVVGE---------DGILKELELAGFQYLG 82 (257)
Q Consensus 24 ~~~L~~~G~~~~~-~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~---------~~~~~~l~~~g~~~~~ 82 (257)
++.|++.|+.++. -.-.++...+ +.+.... .++++|++... +.+.+.|++.|+.+..
T Consensus 109 a~aL~~~G~~~~~~p~~~~~e~L~-~~l~~~~-~~g~~vli~~~~~~~~~~~~~~L~~~L~~~G~~V~~ 175 (381)
T PRK07239 109 TGAIRAAGLREEWSPASESSAEVL-EYLLEEG-VAGKRIAVQLHGATDEWEPLPEFLEALRAAGAEVVP 175 (381)
T ss_pred HHHHHHcCCCCccCCCCCccHHHH-HHHhcCC-CCCCEEEEEcCCCccccCchHHHHHHHHHCCCEEEE
Confidence 3456778886432 1333554444 4554332 24678777522 2588899999987753
No 342
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=29.95 E-value=33 Score=27.92 Aligned_cols=20 Identities=5% Similarity=-0.031 Sum_probs=14.8
Q ss_pred hhccCCcEEEEeCCCCcCHH
Q 025117 2 LRSKGKRLVFVTNNSTKSRK 21 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~ 21 (257)
|+++|+++.++||+.....+
T Consensus 86 l~~~g~~~~IvS~~~~~~i~ 105 (219)
T PRK09552 86 VKENNIPFYVVSGGMDFFVY 105 (219)
T ss_pred HHHcCCeEEEECCCcHHHHH
Confidence 67889999999996543333
No 343
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=29.86 E-value=1.6e+02 Score=26.03 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=37.9
Q ss_pred CcEEEEeCCCCcCHHHHHHHHHhCCCCCCC----------CceechHHH-----HHHHHHhcCCCCCCEEEEEcCHH
Q 025117 7 KRLVFVTNNSTKSRKQYGKKFETLGLTVTE----------EEIFASSFA-----AAAYLKSIDFPKDKKVYVVGEDG 68 (257)
Q Consensus 7 ~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~----------~~i~ts~~~-----~~~~l~~~~~~~~~~v~vlg~~~ 68 (257)
-++++|||+.-..=..+.+.+...+|+..+ +.|++|+.. .+..|++ .+++++.++|-.+
T Consensus 214 apvfYvSnSPw~~f~~L~efi~~~~~P~GPl~L~~~g~~~~~i~~sga~rK~~~l~nil~~---~p~~kfvLVGDsG 287 (373)
T COG4850 214 APVFYVSNSPWQLFPTLQEFITNRNFPYGPLLLRRWGGVLDNIIESGAARKGQSLRNILRR---YPDRKFVLVGDSG 287 (373)
T ss_pred CCeEEecCChhHhHHHHHHHHhcCCCCCCchhHhhcCCcccccccchhhhcccHHHHHHHh---CCCceEEEecCCC
Confidence 789999997777778888888888887432 455555542 2323333 2456666666543
No 344
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=29.83 E-value=51 Score=23.00 Aligned_cols=41 Identities=27% Similarity=0.436 Sum_probs=23.1
Q ss_pred HHHHHHHHhCCCCCCCCceechHHHHHHHHHhcCCCCCCEEEEEcCH
Q 025117 21 KQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGED 67 (257)
Q Consensus 21 ~~~~~~L~~~G~~~~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~~ 67 (257)
..++++|.++|+. |+.+ .-++.||++++.+-.+.+..++.+
T Consensus 3 ~~~a~~l~~lG~~-----i~AT-~gTa~~L~~~Gi~~~~v~~~~~~~ 43 (95)
T PF02142_consen 3 VPLAKRLAELGFE-----IYAT-EGTAKFLKEHGIEVTEVVNKIGEG 43 (95)
T ss_dssp HHHHHHHHHTTSE-----EEEE-HHHHHHHHHTT--EEECCEEHSTG
T ss_pred HHHHHHHHHCCCE-----EEEC-hHHHHHHHHcCCCceeeeeecccC
Confidence 3678999999965 3322 234588888776311223444444
No 345
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=29.61 E-value=3.2e+02 Score=22.46 Aligned_cols=72 Identities=15% Similarity=0.211 Sum_probs=41.0
Q ss_pred CCcEEEEeCCCC-----------cCHHHHHHHHHhCCCCCCCCceech-------HHHHHHHHHhcCCCCCCEEEEEcCH
Q 025117 6 GKRLVFVTNNST-----------KSRKQYGKKFETLGLTVTEEEIFAS-------SFAAAAYLKSIDFPKDKKVYVVGED 67 (257)
Q Consensus 6 g~~~~~lTN~s~-----------~~~~~~~~~L~~~G~~~~~~~i~ts-------~~~~~~~l~~~~~~~~~~v~vlg~~ 67 (257)
.+++.|++.... +..+.+.+.+++.|+++..+.++.. ...+..++++.. .-.+.+..++
T Consensus 113 ~~~i~~i~~~~~~~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~ai~~~~d 189 (269)
T cd06297 113 PGRIGAITVEEEPDRAFRRTVFAERRAGFQQALKDAGRPFSPDLLAITDHSEEGGRLAMRHLLEKAS---PPLAVFASAD 189 (269)
T ss_pred CCceEEEeCccccccccccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCChhhHHHHHHHHHcCCC---CCcEEEEcCc
Confidence 567778764322 2256677778889998655444321 234555554321 1234444443
Q ss_pred ----HHHHHHHHcCCee
Q 025117 68 ----GILKELELAGFQY 80 (257)
Q Consensus 68 ----~~~~~l~~~g~~~ 80 (257)
++.+.+++.|+++
T Consensus 190 ~~a~g~~~~l~~~g~~v 206 (269)
T cd06297 190 QQALGALQEAVELGLTV 206 (269)
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 5677888888754
No 346
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=29.44 E-value=1e+02 Score=26.20 Aligned_cols=41 Identities=15% Similarity=0.072 Sum_probs=27.8
Q ss_pred hHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHHHHHHhh
Q 025117 205 TDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKAAA 256 (257)
Q Consensus 205 ~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~~~l~~~ 256 (257)
.=+.+|++.|+..+.|..... ..|..++.+++|+.++++..
T Consensus 214 eKi~AA~~lgi~vivI~RP~~-----------~~~~~~~~~~~el~~~l~~~ 254 (256)
T TIGR00715 214 EKVKAAEALGINVIRIARPQT-----------IPGVAIFDDISQLNQFVARL 254 (256)
T ss_pred HHHHHHHHcCCcEEEEeCCCC-----------CCCCccCCCHHHHHHHHHHh
Confidence 446777777777777765421 23346789999999998753
No 347
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=29.12 E-value=29 Score=30.88 Aligned_cols=18 Identities=44% Similarity=0.682 Sum_probs=14.4
Q ss_pred ChhccCCcEEEEeCCCCcC
Q 025117 1 MLRSKGKRLVFVTNNSTKS 19 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~~ 19 (257)
+|++.||++.++|| |+.+
T Consensus 251 kL~~~GKklFLiTN-SPys 268 (510)
T KOG2470|consen 251 KLKDHGKKLFLITN-SPYS 268 (510)
T ss_pred HHHHhcCcEEEEeC-Cchh
Confidence 37789999999999 5444
No 348
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=29.11 E-value=94 Score=20.84 Aligned_cols=49 Identities=16% Similarity=0.106 Sum_probs=27.9
Q ss_pred CcCHHHHHHHHHhCCCCCCCCceechHHHHHHHHHhcCCCCCCEEEEEcCHH
Q 025117 17 TKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDG 68 (257)
Q Consensus 17 ~~~~~~~~~~L~~~G~~~~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~~~ 68 (257)
......+++.|++.|+.+..+.--.+..--..|..+.+. .-+.++|...
T Consensus 14 ~~~a~~~~~~Lr~~g~~v~~d~~~~~~~~~~~~a~~~g~---~~~iiig~~e 62 (91)
T cd00860 14 LDYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKI---PYILVVGDKE 62 (91)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCC---CEEEEECcch
Confidence 335567788888899986542211233333344444444 4577777655
No 349
>PRK05764 aspartate aminotransferase; Provisional
Probab=28.87 E-value=4.1e+02 Score=23.46 Aligned_cols=64 Identities=14% Similarity=0.059 Sum_probs=34.3
Q ss_pred CHHHHHHHHHh-CCCCCCCCcee-chHHH-HHHHHHhcCCCCCCEEEEEcC--HHHHHHHHHcCCeeeC
Q 025117 19 SRKQYGKKFET-LGLTVTEEEIF-ASSFA-AAAYLKSIDFPKDKKVYVVGE--DGILKELELAGFQYLG 82 (257)
Q Consensus 19 ~~~~~~~~L~~-~G~~~~~~~i~-ts~~~-~~~~l~~~~~~~~~~v~vlg~--~~~~~~l~~~g~~~~~ 82 (257)
.++.+++.+.+ .|+.+++++|+ |++.. +...+-..-..++++|++... ......++..|.++..
T Consensus 73 lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~ 141 (393)
T PRK05764 73 LREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWVSYPEMVKLAGGVPVF 141 (393)
T ss_pred HHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHhcCCCCEEEecCCCCcchHHHHHHcCCEEEE
Confidence 35666666643 57777777755 44432 222221211234566655432 2456667777877654
No 350
>PRK09620 hypothetical protein; Provisional
Probab=28.80 E-value=53 Score=27.32 Aligned_cols=27 Identities=15% Similarity=0.096 Sum_probs=18.8
Q ss_pred cEEEEeCCCCcCH-HHHHHHHHhCCCCC
Q 025117 8 RLVFVTNNSTKSR-KQYGKKFETLGLTV 34 (257)
Q Consensus 8 ~~~~lTN~s~~~~-~~~~~~L~~~G~~~ 34 (257)
+|+|+||.|+=.. ..+++.|.+.|..|
T Consensus 19 ~VR~itN~SSGfiGs~LA~~L~~~Ga~V 46 (229)
T PRK09620 19 QVRGHTNMAKGTIGRIIAEELISKGAHV 46 (229)
T ss_pred CeeEecCCCcCHHHHHHHHHHHHCCCeE
Confidence 5888898775443 67777777777654
No 351
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=28.77 E-value=69 Score=29.01 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=19.5
Q ss_pred hhhHHHHHHHcCCeEEEEccC
Q 025117 203 LDTDILFGQNGGCKTLLVLSG 223 (257)
Q Consensus 203 ~~~Di~~A~~aG~~ti~V~~G 223 (257)
...||+.|+++|++...+..|
T Consensus 19 w~~di~~A~~~GIDgFaLNig 39 (386)
T PF03659_consen 19 WEADIRLAQAAGIDGFALNIG 39 (386)
T ss_pred HHHHHHHHHHcCCCEEEEecc
Confidence 578999999999999999888
No 352
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=28.40 E-value=3.6e+02 Score=22.63 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=39.2
Q ss_pred hccC-CcEEEEeCCCC-----cCHHHHHHHHHhCCCCCCCCceec----h---HHHHHHHHHhcCCCCCCEEEEEcCH--
Q 025117 3 RSKG-KRLVFVTNNST-----KSRKQYGKKFETLGLTVTEEEIFA----S---SFAAAAYLKSIDFPKDKKVYVVGED-- 67 (257)
Q Consensus 3 ~~~g-~~~~~lTN~s~-----~~~~~~~~~L~~~G~~~~~~~i~t----s---~~~~~~~l~~~~~~~~~~v~vlg~~-- 67 (257)
.++| .++.|++.... ...+.+.+.+++.|+++....+++ . ...+..++++. +.-.+++..++
T Consensus 148 ~~~G~~~I~~l~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~ai~~~~d~~ 224 (309)
T PRK11041 148 HELGHKRIACIAGPEEMPLCHYRLQGYVQALRRCGITVDPQYIARGDFTFEAGAKALKQLLDLP---QPPTAVFCHSDVM 224 (309)
T ss_pred HHcCCceEEEEeCCccccchHHHHHHHHHHHHHcCCCCCHHHeEeCCCCHHHHHHHHHHHHcCC---CCCCEEEEcCcHH
Confidence 3445 56888864322 123556677788898764433322 1 12334444432 11234444444
Q ss_pred --HHHHHHHHcCCee
Q 025117 68 --GILKELELAGFQY 80 (257)
Q Consensus 68 --~~~~~l~~~g~~~ 80 (257)
++...+++.|+.+
T Consensus 225 a~gv~~al~~~g~~i 239 (309)
T PRK11041 225 ALGALSQAKRMGLRV 239 (309)
T ss_pred HHHHHHHHHHcCCCC
Confidence 4567788888753
No 353
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=28.31 E-value=95 Score=22.03 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=17.7
Q ss_pred cCCcEEEEeCCCC-cCHHHHHHHHHhCCCC
Q 025117 5 KGKRLVFVTNNST-KSRKQYGKKFETLGLT 33 (257)
Q Consensus 5 ~g~~~~~lTN~s~-~~~~~~~~~L~~~G~~ 33 (257)
.+.++++..+++. ......+..|+.+|++
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~ 92 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAELGFP 92 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHcCCe
Confidence 3456777766543 3445566677777775
No 354
>PRK05406 LamB/YcsF family protein; Provisional
Probab=28.19 E-value=3.4e+02 Score=22.99 Aligned_cols=86 Identities=15% Similarity=0.070 Sum_probs=52.5
Q ss_pred HHHhccCCCccccCCCcHHHHHHHHHHh-----------CCCCCcEEEEcCChhhHHHHHHHcCCeEE---EEccCCCCh
Q 025117 162 AFVGSTQREPLVVGKPSTFMMDYLANKF-----------GIQKSQICMVGDRLDTDILFGQNGGCKTL---LVLSGVTSL 227 (257)
Q Consensus 162 ~i~~~~~~~~~~~gKP~p~~~~~~~~~~-----------~~~~~~~~~IGD~~~~Di~~A~~aG~~ti---~V~~G~~~~ 227 (257)
.+....|.. ...=||+-.+|..+...- .++|+-.+|.-.. ..=.+.|++.|++.+ +.-..+...
T Consensus 97 ~~a~~~g~~-l~hVKPHGALYN~~~~d~~~a~av~~ai~~~~~~l~l~~~~~-s~~~~~A~~~Gl~~~~E~FADR~Y~~d 174 (246)
T PRK05406 97 AIARAAGGR-VSHVKPHGALYNMAAKDPALADAVAEAVAAVDPSLILVGLAG-SELIRAAEEAGLRTASEVFADRAYTAD 174 (246)
T ss_pred HHHHHcCCe-eEEeCccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecCC-hHHHHHHHHcCCcEEEEEEecCCcCCC
Confidence 333444443 344599988888765321 3366655555344 345778999999865 444555544
Q ss_pred hhhcCCCCCCCCcEEECChhhHHHH
Q 025117 228 SMLQSPNNSIQPDFYTNKISDFLSL 252 (257)
Q Consensus 228 ~~~~~~~~~~~pd~~~~~l~el~~~ 252 (257)
..+- ....|..++.+..++.+-
T Consensus 175 G~Lv---~R~~~gAvi~d~~~v~~~ 196 (246)
T PRK05406 175 GTLV---PRSQPGAVIHDEEEAAAQ 196 (246)
T ss_pred CCCc---CCCCCCCccCCHHHHHHH
Confidence 4432 235788899998887653
No 355
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=27.96 E-value=3.3e+02 Score=24.32 Aligned_cols=71 Identities=14% Similarity=0.245 Sum_probs=43.9
Q ss_pred hhccC-CcEEEEeCCCCc---CHHHHHHHHHhCCCCCCC-Cce-----echHHHHHHHHHhcCCCCCCEEEEEcCHHHHH
Q 025117 2 LRSKG-KRLVFVTNNSTK---SRKQYGKKFETLGLTVTE-EEI-----FASSFAAAAYLKSIDFPKDKKVYVVGEDGILK 71 (257)
Q Consensus 2 L~~~g-~~~~~lTN~s~~---~~~~~~~~L~~~G~~~~~-~~i-----~ts~~~~~~~l~~~~~~~~~~v~vlg~~~~~~ 71 (257)
|++.| ++++++|..+.+ ..+.+.+.|++.|+.+.. +++ +.....+++.+++.+. .-|.-+|+....+
T Consensus 24 l~~~g~~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~---D~IiaiGGGSviD 100 (379)
T TIGR02638 24 VKRRGFKKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGA---DYLIAIGGGSPID 100 (379)
T ss_pred HHhcCCCEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCC---CEEEEeCChHHHH
Confidence 34556 789999976544 336788888888876321 122 3333445566665433 5677799887766
Q ss_pred HHHH
Q 025117 72 ELEL 75 (257)
Q Consensus 72 ~l~~ 75 (257)
..+.
T Consensus 101 ~aKa 104 (379)
T TIGR02638 101 TAKA 104 (379)
T ss_pred HHHH
Confidence 5543
No 356
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=27.88 E-value=1e+02 Score=21.14 Aligned_cols=28 Identities=7% Similarity=0.246 Sum_probs=19.6
Q ss_pred cCCcEEEEeCCCCcCHHHHHHHHHhCCCC
Q 025117 5 KGKRLVFVTNNSTKSRKQYGKKFETLGLT 33 (257)
Q Consensus 5 ~g~~~~~lTN~s~~~~~~~~~~L~~~G~~ 33 (257)
..++++|..+++ ......+..|.++|+.
T Consensus 53 ~~~~iv~~c~~g-~~s~~~~~~L~~~g~~ 80 (99)
T cd01527 53 GANAIIFHCRSG-MRTQQNAERLAAISAG 80 (99)
T ss_pred CCCcEEEEeCCC-chHHHHHHHHHHcCCc
Confidence 356788888844 4455677778888875
No 357
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=27.88 E-value=3e+02 Score=23.09 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=25.4
Q ss_pred CCCCCcEEEEcCChhhHHHHHH-HcCCeEEEEccCCC
Q 025117 190 GIQKSQICMVGDRLDTDILFGQ-NGGCKTLLVLSGVT 225 (257)
Q Consensus 190 ~~~~~~~~~IGD~~~~Di~~A~-~aG~~ti~V~~G~~ 225 (257)
|+.-++.++|||. ..|+-.-. -.+.+.+..+.|+.
T Consensus 179 gv~yer~iYvGDG-~nD~CP~l~Lr~~D~ampRkgfp 214 (256)
T KOG3120|consen 179 GVRYERLIYVGDG-ANDFCPVLRLRACDVAMPRKGFP 214 (256)
T ss_pred CCceeeEEEEcCC-CCCcCcchhcccCceecccCCCc
Confidence 6777899999999 79986543 34556666676754
No 358
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=27.81 E-value=1e+02 Score=26.27 Aligned_cols=46 Identities=13% Similarity=0.005 Sum_probs=28.5
Q ss_pred hhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHHHHHH
Q 025117 203 LDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKA 254 (257)
Q Consensus 203 ~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~~~l~ 254 (257)
+..++.+++.+|++.+++.+|-.....- ..+.-.+++-.+|++++.
T Consensus 75 l~~~L~~~~~~Gi~nvL~l~GD~~~~~~------~~~~~~f~~a~~Li~~i~ 120 (272)
T TIGR00676 75 IREILREYRELGIRHILALRGDPPKGEG------TPTPGGFNYASELVEFIR 120 (272)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCCCCC------CCCCCCCCCHHHHHHHHH
Confidence 4677888899999999998886543210 122223445556666554
No 359
>COG1985 RibD Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism]
Probab=27.79 E-value=2.9e+02 Score=22.80 Aligned_cols=64 Identities=17% Similarity=0.167 Sum_probs=43.5
Q ss_pred CcEEEEeCCCCcCHHHHHHHHHhCCCCC--CCCceechHHHHHHHHHhcCCCCCCEEEEEcCHHHHHHHHHcCC
Q 025117 7 KRLVFVTNNSTKSRKQYGKKFETLGLTV--TEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDGILKELELAGF 78 (257)
Q Consensus 7 ~~~~~lTN~s~~~~~~~~~~L~~~G~~~--~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~~~~~~~l~~~g~ 78 (257)
.|++++|++. .+..+.|++.|..+ .+.+-+. ...+.+.|.+.++ +++++=|...+...|-+.|+
T Consensus 98 ~p~~v~~~~~----~~~~~~~~~~g~~~i~~~~~~vd-l~~~l~~L~~~~i---~~vlvEGG~~L~~s~l~~gl 163 (218)
T COG1985 98 APTIVVTTEP----EEKLRELKEAGVEVILLPDGRVD-LAALLEELAERGI---NSVLVEGGATLNGSFLEAGL 163 (218)
T ss_pred CcEEEEecCc----hhhhhHHHhCCCEEEEcCCCccC-HHHHHHHHHhCCC---cEEEEccCHHHHHHHHHcCC
Confidence 5777777744 67778888888863 1111121 2344566766654 68999999999999888774
No 360
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=27.74 E-value=62 Score=25.74 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=31.3
Q ss_pred HHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCCh
Q 025117 185 LANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSL 227 (257)
Q Consensus 185 ~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~ 227 (257)
+.+.+.++ +++.|+...-++.|+++|++.+++.+-+...
T Consensus 129 ~vrth~id----lf~ed~~~na~~iAk~~~~~vilins~ynRk 167 (194)
T COG5663 129 AVRTHNID----LFFEDSHDNAGQIAKNAGIPVILINSPYNRK 167 (194)
T ss_pred hhHhhccC----ccccccCchHHHHHHhcCCcEEEecCccccc
Confidence 44556654 7899998888999999999999999876543
No 361
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=27.57 E-value=3.9e+02 Score=22.84 Aligned_cols=71 Identities=15% Similarity=0.220 Sum_probs=38.3
Q ss_pred cCCcEEEEeCCCCcCHHHHHHHHHhCCCCC---C----CCc---e----echHHHHHHHHHhcCCCCCCEEEEEcCH---
Q 025117 5 KGKRLVFVTNNSTKSRKQYGKKFETLGLTV---T----EEE---I----FASSFAAAAYLKSIDFPKDKKVYVVGED--- 67 (257)
Q Consensus 5 ~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~---~----~~~---i----~ts~~~~~~~l~~~~~~~~~~v~vlg~~--- 67 (257)
.+..-+++.... .......+++++.|+++ + ... | ...+..+.+||.++++ +++.+++..
T Consensus 119 ~~vdgiIi~~~~-~~~~~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~---~~I~~i~g~~~~ 194 (342)
T PRK10014 119 QGVDGVVIAGAA-GSSDDLREMAEEKGIPVVFASRASYLDDVDTVRPDNMQAAQLLTEHLIRNGH---QRIAWLGGQSSS 194 (342)
T ss_pred CCCCEEEEeCCC-CCcHHHHHHHhhcCCCEEEEecCCCCCCCCEEEeCCHHHHHHHHHHHHHCCC---CEEEEEcCCccc
Confidence 344445554422 23345667777777762 1 111 1 1456677888877653 577777532
Q ss_pred --------HHHHHHHHcCCe
Q 025117 68 --------GILKELELAGFQ 79 (257)
Q Consensus 68 --------~~~~~l~~~g~~ 79 (257)
++++.+++.|+.
T Consensus 195 ~~~~~R~~Gf~~al~~~g~~ 214 (342)
T PRK10014 195 LTRAERVGGYCATLLKFGLP 214 (342)
T ss_pred ccHHHHHHHHHHHHHHcCCC
Confidence 345556666643
No 362
>PRK08361 aspartate aminotransferase; Provisional
Probab=27.39 E-value=4.4e+02 Score=23.35 Aligned_cols=66 Identities=11% Similarity=0.187 Sum_probs=36.2
Q ss_pred CcCHHHHHHHHHh-CCCCCCCCcee-chHHHHHHH-HHhcCCCCCCEEEEEcC--HHHHHHHHHcCCeeeC
Q 025117 17 TKSRKQYGKKFET-LGLTVTEEEIF-ASSFAAAAY-LKSIDFPKDKKVYVVGE--DGILKELELAGFQYLG 82 (257)
Q Consensus 17 ~~~~~~~~~~L~~-~G~~~~~~~i~-ts~~~~~~~-l~~~~~~~~~~v~vlg~--~~~~~~l~~~g~~~~~ 82 (257)
..-++.+++.+.+ .|+.+++++|+ |++...+-+ +-..-..++.+|.+... ......++..|.++..
T Consensus 73 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~g~~Vlv~~p~y~~~~~~~~~~g~~~~~ 143 (391)
T PRK08361 73 PELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVEDAKIAEAKPIR 143 (391)
T ss_pred HHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHHHcCCEEEE
Confidence 3445677777754 58888888865 444332222 21111234566665432 2355666667876654
No 363
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=26.99 E-value=80 Score=24.43 Aligned_cols=13 Identities=31% Similarity=0.488 Sum_probs=7.4
Q ss_pred hCCCCCcEEEEcC
Q 025117 189 FGIQKSQICMVGD 201 (257)
Q Consensus 189 ~~~~~~~~~~IGD 201 (257)
.|++++++..|+-
T Consensus 138 ~gi~~~~i~~i~~ 150 (157)
T smart00775 138 VGIPPSRIFTINP 150 (157)
T ss_pred cCCChhhEEEECC
Confidence 4556666665554
No 364
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=26.86 E-value=1.2e+02 Score=18.89 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=22.1
Q ss_pred CcEEEEeCCCCcCHHHHHHHHHhCCCC
Q 025117 7 KRLVFVTNNSTKSRKQYGKKFETLGLT 33 (257)
Q Consensus 7 ~~~~~lTN~s~~~~~~~~~~L~~~G~~ 33 (257)
..+.+..+....+.+++.+.+++.|++
T Consensus 36 ~~v~v~~~~~~~~~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 36 KTVTVTYDPDKTSIEKIIEAIEKAGYE 62 (62)
T ss_dssp TEEEEEESTTTSCHHHHHHHHHHTTSE
T ss_pred CEEEEEEecCCCCHHHHHHHHHHhCcC
Confidence 467778886667889999999999974
No 365
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=26.76 E-value=2.9e+02 Score=24.69 Aligned_cols=70 Identities=19% Similarity=0.181 Sum_probs=42.4
Q ss_pred hccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCc-----eechHHHHHHHHHhcCCCCCCEEEEEcCHHHHHHHHH
Q 025117 3 RSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEE-----IFASSFAAAAYLKSIDFPKDKKVYVVGEDGILKELEL 75 (257)
Q Consensus 3 ~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~-----i~ts~~~~~~~l~~~~~~~~~~v~vlg~~~~~~~l~~ 75 (257)
+..|++++++|.......+.+.+.|++.|+++.... =+....-+...+++.+ ...+.-+|+....+.-+.
T Consensus 19 ~~~~~r~livtd~~~~~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~---~D~IIaiGGGS~~D~aK~ 93 (374)
T cd08183 19 AELGRRVLLVTGASSLRAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAG---CDVVIAIGGGSVIDAGKA 93 (374)
T ss_pred HHcCCcEEEEECCchHHHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcC---CCEEEEecCchHHHHHHH
Confidence 444789999997655556777788888887642211 1222333444454432 256888888876555443
No 366
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=26.67 E-value=5e+02 Score=24.64 Aligned_cols=91 Identities=12% Similarity=0.053 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCc-cccCCCcHHHHHHHHHHhCCCCC
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREP-LVVGKPSTFMMDYLANKFGIQKS 194 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~-~~~gKP~p~~~~~~~~~~~~~~~ 194 (257)
++..++..++...+.+++...|++-+... .+.. .+....+.+. ...-.-..++- ..++++.- ..
T Consensus 81 ~s~~Dil~al~~a~~~~~~ia~vg~~~~~---------~~~~----~~~~ll~~~i~~~~~~~~~e~~-~~~~~l~~-~G 145 (526)
T TIGR02329 81 PTGFDVMQALARARRIASSIGVVTHQDTP---------PALR----RFQAAFNLDIVQRSYVTEEDAR-SCVNDLRA-RG 145 (526)
T ss_pred CChhhHHHHHHHHHhcCCcEEEEecCccc---------HHHH----HHHHHhCCceEEEEecCHHHHH-HHHHHHHH-CC
Confidence 56667777777777666666776654331 1211 1222222222 11112222332 33333311 12
Q ss_pred cEEEEcCChhhHHHHHHHcCCeEEEEccC
Q 025117 195 QICMVGDRLDTDILFGQNGGCKTLLVLSG 223 (257)
Q Consensus 195 ~~~~IGD~~~~Di~~A~~aG~~ti~V~~G 223 (257)
--++|||.+ + ...|+++|+.++++.++
T Consensus 146 ~~~viG~~~-~-~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 146 IGAVVGAGL-I-TDLAEQAGLHGVFLYSA 172 (526)
T ss_pred CCEEECChH-H-HHHHHHcCCceEEEecH
Confidence 247889995 3 67889999999999986
No 367
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=26.66 E-value=72 Score=24.53 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=18.5
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCC
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 33 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~ 33 (257)
|+++|.+++++|++.. .-+...++++|++
T Consensus 85 l~~~g~~~~ivS~~~~---~~i~~~~~~~g~~ 113 (177)
T TIGR01488 85 LKERGIDTVIVSGGFD---FFVEPVAEKLGID 113 (177)
T ss_pred HHHCCCEEEEECCCcH---HHHHHHHHHcCCc
Confidence 5678888888888442 2333445556765
No 368
>PRK08912 hypothetical protein; Provisional
Probab=26.42 E-value=4.5e+02 Score=23.19 Aligned_cols=64 Identities=17% Similarity=0.106 Sum_probs=38.1
Q ss_pred cCHHHHHHHHHh-CCCCCCCC-cee-chHHHHHHHH-HhcCCCCCCEEEEEcCH--HHHHHHHHcCCeee
Q 025117 18 KSRKQYGKKFET-LGLTVTEE-EIF-ASSFAAAAYL-KSIDFPKDKKVYVVGED--GILKELELAGFQYL 81 (257)
Q Consensus 18 ~~~~~~~~~L~~-~G~~~~~~-~i~-ts~~~~~~~l-~~~~~~~~~~v~vlg~~--~~~~~l~~~g~~~~ 81 (257)
.-++.+++.+.+ .|++++++ +|+ |++...+-++ -..-..++.+|.+.... .....++..|.++.
T Consensus 67 ~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~ 136 (387)
T PRK08912 67 ELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLALVEPGDEVVLFQPLYDAYLPLIRRAGGVPR 136 (387)
T ss_pred HHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEE
Confidence 455677777754 69988887 765 5554333221 11112356677765543 56777788887764
No 369
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=26.32 E-value=83 Score=22.99 Aligned_cols=59 Identities=15% Similarity=0.125 Sum_probs=34.2
Q ss_pred CcEEEEeC----CCCcCHHHHHHHHHhCCCCCCCCceechHHHHHHHHHhcCCCCCCEEEEEcCHHH
Q 025117 7 KRLVFVTN----NSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDGI 69 (257)
Q Consensus 7 ~~~~~lTN----~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~~~~ 69 (257)
.+++++.- +.......+++.|++.|+.+..+.- .+..--..|..+.+. +-+.++|...+
T Consensus 27 ~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~~-~sl~kqlk~A~k~g~---~~~iiiG~~e~ 89 (121)
T cd00858 27 IKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDDS-GSIGRRYARQDEIGT---PFCVTVDFDTL 89 (121)
T ss_pred cEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeCC-CCHHHHHHHhHhcCC---CEEEEECcCch
Confidence 34555553 2233446678889999998765432 444444455554443 45777886553
No 370
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=26.09 E-value=1.1e+02 Score=22.04 Aligned_cols=18 Identities=17% Similarity=0.440 Sum_probs=12.1
Q ss_pred cCHHHHHHHHHhCCCCCC
Q 025117 18 KSRKQYGKKFETLGLTVT 35 (257)
Q Consensus 18 ~~~~~~~~~L~~~G~~~~ 35 (257)
.+.+++.+.+...|++-+
T Consensus 62 ~~~~~~~~~~~~~~~~~~ 79 (122)
T cd01448 62 PSPEEFAELLGSLGISND 79 (122)
T ss_pred CCHHHHHHHHHHcCCCCC
Confidence 455777777777777643
No 371
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=25.91 E-value=15 Score=28.52 Aligned_cols=83 Identities=12% Similarity=0.038 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCc-hHH-HHHHhccCCCccccCCCcHHHHHHHHHHhCCCCC
Q 025117 117 NYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGG-SMV-GAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKS 194 (257)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g-~~~-~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~ 194 (257)
.++.+.+.+..+.+ .--+.|+||+...+.. ..+...+.. .+| +.+.+.... ..+.. +.+-..++.+.+
T Consensus 59 ~rPgv~efL~~l~~-~yel~I~T~~~~~yA~-~vl~~ldp~~~~F~~ri~~rd~~-----~~~~~---KdL~~i~~~d~~ 128 (156)
T TIGR02250 59 LRPFLHEFLKEASK-LYEMHVYTMGTRAYAQ-AIAKLIDPDGKYFGDRIISRDES-----GSPHT---KSLLRLFPADES 128 (156)
T ss_pred ECCCHHHHHHHHHh-hcEEEEEeCCcHHHHH-HHHHHhCcCCCeeccEEEEeccC-----CCCcc---ccHHHHcCCCcc
Confidence 45677888888874 3447889999887643 233444443 344 333322111 12211 111133577888
Q ss_pred cEEEEcCChhhHHHHHH
Q 025117 195 QICMVGDRLDTDILFGQ 211 (257)
Q Consensus 195 ~~~~IGD~~~~Di~~A~ 211 (257)
.+++|.|++ |+-..+
T Consensus 129 ~vvivDd~~--~~~~~~ 143 (156)
T TIGR02250 129 MVVIIDDRE--DVWPWH 143 (156)
T ss_pred cEEEEeCCH--HHhhcC
Confidence 999999994 554443
No 372
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=25.71 E-value=6.3e+02 Score=26.29 Aligned_cols=66 Identities=11% Similarity=0.027 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHHHHHHh
Q 025117 179 TFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKAA 255 (257)
Q Consensus 179 p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~~~l~~ 255 (257)
...+...++++|++--+...+.+. ..-...++..|.. +.|..-... +-.--.++.+..||.+.+..
T Consensus 670 K~~~~~~L~~~GIp~P~~~~~~s~-ee~~~~~~~igyP-vvVKP~~~~---------Gg~Gv~iv~~~eeL~~~~~~ 735 (1066)
T PRK05294 670 RERFSKLLEKLGIPQPPNGTATSV-EEALEVAEEIGYP-VLVRPSYVL---------GGRAMEIVYDEEELERYMRE 735 (1066)
T ss_pred HHHHHHHHHHcCcCCCCeEEECCH-HHHHHHHHhcCCC-eEEEeCCCC---------CCCcEEEECCHHHHHHHHHH
Confidence 355677888899987777777654 3334566777875 344321110 01234567777777666553
No 373
>PF07592 DDE_Tnp_ISAZ013: Rhodopirellula transposase DDE domain; InterPro: IPR011518 These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=25.39 E-value=1e+02 Score=26.98 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=25.2
Q ss_pred CcCHHHHHHHHHhCCCCCCCCceechHHHHHHHHHhcCC
Q 025117 17 TKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDF 55 (257)
Q Consensus 17 ~~~~~~~~~~L~~~G~~~~~~~i~ts~~~~~~~l~~~~~ 55 (257)
.+|...++++|.++|+++ |...++..|++.++
T Consensus 24 ~~S~~~la~~L~~~G~~v-------S~~tV~~lL~~lGY 55 (311)
T PF07592_consen 24 RKSTRKLAEELRRQGHPV-------SARTVARLLNRLGY 55 (311)
T ss_pred eccHHHHHHHHHHcCCCc-------cHHHHHHHHHHcCc
Confidence 478899999999999993 45666788887664
No 374
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=25.38 E-value=1.6e+02 Score=21.62 Aligned_cols=61 Identities=13% Similarity=0.129 Sum_probs=38.3
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHHHHHHHHHhcCCCCCCEEEEEcC
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGE 66 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~ 66 (257)
|.+.+.+-+++| +....+++-||+=.|++.+.-.+......+.+.+.... .+..++|++.+
T Consensus 49 L~~~~i~~viv~---G~Ra~DmalRLkyAGv~~~~i~v~~d~~~a~~~~~~~~-~~~~~~yil~t 109 (113)
T PF08353_consen 49 LADPNIKQVIVS---GTRAEDMALRLKYAGVDEEKIIVEEDLEEALDAFLIKS-DPTDKVYILAT 109 (113)
T ss_pred HhcCCCCEEEEE---eeeHHHHHhHeeecCcchHHeEecCCHHHHHHHHHHhc-CCCCcEEEEEC
Confidence 444444555553 45688999999999999666556666666666622111 24567888754
No 375
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=25.29 E-value=1.8e+02 Score=19.74 Aligned_cols=57 Identities=18% Similarity=0.138 Sum_probs=28.2
Q ss_pred CcEEEEeCCCCcCHHHHHHHHHhCCCCCCC--------CceechHH--HHHHHHHhcCCCCCCEEEEEcC
Q 025117 7 KRLVFVTNNSTKSRKQYGKKFETLGLTVTE--------EEIFASSF--AAAAYLKSIDFPKDKKVYVVGE 66 (257)
Q Consensus 7 ~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~--------~~i~ts~~--~~~~~l~~~~~~~~~~v~vlg~ 66 (257)
+..++..|.+.+..+.++ +.+|++.+. -+..++.. .+.+++++..+.++.++.+++.
T Consensus 11 id~~i~hq~~~~~~~~~~---~~lgi~~~~~~~~~~~~Gn~~sa~~~~~L~~~~~~g~~~~Gd~vl~~~~ 77 (90)
T PF08541_consen 11 IDHFIPHQASKKILDSIA---KRLGIPPERFPDNLAEYGNTGSASIPINLADALEEGRIKPGDRVLLVGF 77 (90)
T ss_dssp ESEEEE-SSSHHHHHHHH---HHHTS-GGGBE-THHHH-B-GGGHHHHHHHHHHHTTSSCTTEEEEEEEE
T ss_pred CCEEEeCCCCHHHHHHHH---HHcCCcHHHHHHHHhccCcchhhhHHHHHHHHHHcCCCCCCCEEEEEEE
Confidence 446667775544444443 446776331 12222222 3555566555667788877763
No 376
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=25.20 E-value=3.8e+02 Score=26.35 Aligned_cols=113 Identities=12% Similarity=0.078 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCccccCCCcHHHHHHHHHHhCCCCCcE
Q 025117 117 NYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLANKFGIQKSQI 196 (257)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~ 196 (257)
.-++..++++.+++ .|+..+.-..|............|+..++ ---+|.- =...++.++-....+
T Consensus 447 ~Rp~a~eaI~~l~~-~Gi~v~miTGD~~~ta~~iA~~lGI~~v~------------a~~~Ped--K~~~v~~lq~~g~~V 511 (675)
T TIGR01497 447 VKGGIKERFAQLRK-MGIKTIMITGDNRLTAAAIAAEAGVDDFI------------AEATPED--KIALIRQEQAEGKLV 511 (675)
T ss_pred chhHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHcCCCEEE------------cCCCHHH--HHHHHHHHHHcCCeE
Confidence 44677888888887 46644333333322111111222322111 0123432 223333333334569
Q ss_pred EEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEE--CChhhHHHHHH
Q 025117 197 CMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYT--NKISDFLSLKA 254 (257)
Q Consensus 197 ~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~--~~l~el~~~l~ 254 (257)
.|+||. ..|..+=+.|++- +.+.+|. ... . ...|.++ +++..+.+.+.
T Consensus 512 amvGDG-~NDapAL~~AdvG-iAm~~gt--~~a-k-----eaadivLldd~~s~Iv~av~ 561 (675)
T TIGR01497 512 AMTGDG-TNDAPALAQADVG-VAMNSGT--QAA-K-----EAANMVDLDSDPTKLIEVVH 561 (675)
T ss_pred EEECCC-cchHHHHHhCCEe-EEeCCCC--HHH-H-----HhCCEEECCCCHHHHHHHHH
Confidence 999999 5999999999854 3444442 211 1 2456665 56777776553
No 377
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=25.14 E-value=47 Score=20.06 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=16.6
Q ss_pred CcCHHHHHHHHHhCCCCCCCCce
Q 025117 17 TKSRKQYGKKFETLGLTVTEEEI 39 (257)
Q Consensus 17 ~~~~~~~~~~L~~~G~~~~~~~i 39 (257)
..+++++.+..+..|+.++.+++
T Consensus 26 ~~~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 26 CQNPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred cCCHHHHHHHHHHcCCCCCHHHh
Confidence 34777888877888888776543
No 378
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=25.10 E-value=6e+02 Score=24.18 Aligned_cols=89 Identities=12% Similarity=0.090 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHHHhccCCCc-cccCCCcHHHHHHH--HHHhCCC
Q 025117 116 FNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREP-LVVGKPSTFMMDYL--ANKFGIQ 192 (257)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i~~~~~~~~-~~~gKP~p~~~~~~--~~~~~~~ 192 (257)
++..++..++...+.+.+...|++-+... .+...+.+.+ +.+. ........+.-..+ ++..|+
T Consensus 91 ~s~~Dil~al~~a~~~~~~iavv~~~~~~---------~~~~~~~~~l----~~~i~~~~~~~~~e~~~~v~~lk~~G~- 156 (538)
T PRK15424 91 PSGFDVMQALARARKLTSSIGVVTYQETI---------PALVAFQKTF----NLRIEQRSYVTEEDARGQINELKANGI- 156 (538)
T ss_pred CCHhHHHHHHHHHHhcCCcEEEEecCccc---------HHHHHHHHHh----CCceEEEEecCHHHHHHHHHHHHHCCC-
Confidence 56667777877777666667776654331 1212222222 2221 11122222332222 222344
Q ss_pred CCcEEEEcCChhhHHHHHHHcCCeEEEEccC
Q 025117 193 KSQICMVGDRLDTDILFGQNGGCKTLLVLSG 223 (257)
Q Consensus 193 ~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~G 223 (257)
-++|||.+ + ...|.++|+.++++.++
T Consensus 157 ---~~vvG~~~-~-~~~A~~~g~~g~~~~s~ 182 (538)
T PRK15424 157 ---EAVVGAGL-I-TDLAEEAGMTGIFIYSA 182 (538)
T ss_pred ---CEEEcCch-H-HHHHHHhCCceEEecCH
Confidence 47889985 3 77899999999999875
No 379
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=25.01 E-value=22 Score=23.73 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=14.0
Q ss_pred EeCCCCcCHHHHHHHHHhCCCCCC
Q 025117 12 VTNNSTKSRKQYGKKFETLGLTVT 35 (257)
Q Consensus 12 lTN~s~~~~~~~~~~L~~~G~~~~ 35 (257)
++|+.-.+-+++.+.|++.||.++
T Consensus 14 i~~~~i~sQ~eL~~~L~~~Gi~vT 37 (70)
T PF01316_consen 14 ISEHEISSQEELVELLEEEGIEVT 37 (70)
T ss_dssp HHHS---SHHHHHHHHHHTT-T--
T ss_pred HHHCCcCCHHHHHHHHHHcCCCcc
Confidence 345566778888888888888854
No 380
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=25.00 E-value=1.8e+02 Score=23.54 Aligned_cols=65 Identities=18% Similarity=0.285 Sum_probs=40.9
Q ss_pred cCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceech-----HHHHHHHHHhcCCCCCCEEEEEcCHHHHHHHHH
Q 025117 5 KGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFAS-----SFAAAAYLKSIDFPKDKKVYVVGEDGILKELEL 75 (257)
Q Consensus 5 ~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts-----~~~~~~~l~~~~~~~~~~v~vlg~~~~~~~l~~ 75 (257)
.|++++|+.-+. .+..+.+.|++.|+.+..-.++.. ...+.+.+.... -.+.++.+....+.|.+
T Consensus 116 ~~~~vl~~~g~~--~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~l~~~~----~~~v~ftS~~~~~~~~~ 185 (231)
T PF02602_consen 116 RGKRVLILRGEG--GRPDLPEKLREAGIEVTEVIVYETPPEELSPELKEALDRGE----IDAVVFTSPSAVRAFLE 185 (231)
T ss_dssp TTEEEEEEESSS--SCHHHHHHHHHTTEEEEEEECEEEEEHHHHHHHHHHHHHTT----TSEEEESSHHHHHHHHH
T ss_pred CCCeEEEEcCCC--ccHHHHHHHHHCCCeEEEEEEeecccccchHHHHHHHHcCC----CCEEEECCHHHHHHHHH
Confidence 456788888544 367899999999999887777765 122333343322 24666666665554443
No 381
>PRK08068 transaminase; Reviewed
Probab=24.87 E-value=4.9e+02 Score=23.03 Aligned_cols=65 Identities=15% Similarity=0.110 Sum_probs=37.4
Q ss_pred cCHHHHHHHHH-hCCCCCCCC-ce-echHHHHHHHHH-hcCCCCCCEEEEEcC--HHHHHHHHHcCCeeeC
Q 025117 18 KSRKQYGKKFE-TLGLTVTEE-EI-FASSFAAAAYLK-SIDFPKDKKVYVVGE--DGILKELELAGFQYLG 82 (257)
Q Consensus 18 ~~~~~~~~~L~-~~G~~~~~~-~i-~ts~~~~~~~l~-~~~~~~~~~v~vlg~--~~~~~~l~~~g~~~~~ 82 (257)
.-++.+++.+. +.|++++++ +| +|+|...+-++. ..-..++..|.+... ......++..|.++..
T Consensus 74 ~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~ 144 (389)
T PRK08068 74 FLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVELPQCLMNPGDTILVPDPGYPDYLSGVALARAQFET 144 (389)
T ss_pred HHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEE
Confidence 34566777765 369988887 65 577764333332 211234566665532 2456666778877654
No 382
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=24.86 E-value=2.8e+02 Score=25.20 Aligned_cols=64 Identities=9% Similarity=0.071 Sum_probs=37.7
Q ss_pred CCCCcEEEEcCChhhHHHHH---HHcCCeEEEEccCCCChhhhcCCCCCCCCcEEE---CChhhHHHHHHh
Q 025117 191 IQKSQICMVGDRLDTDILFG---QNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYT---NKISDFLSLKAA 255 (257)
Q Consensus 191 ~~~~~~~~IGD~~~~Di~~A---~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~---~~l~el~~~l~~ 255 (257)
+.-.+++++||. ..=+..+ ..+||..+.+.++....+...........+..+ .++.++.+++..
T Consensus 272 l~Gkrv~i~gd~-~~~~~l~~~L~elGm~~v~~~t~~~~~~~~~~~~~~l~~~~~v~~~~d~~~l~~~i~~ 341 (407)
T TIGR01279 272 LRGKKIFFFGDN-LLELPLARFLKRCGMEVVECGTPYIHRRFHAAELALLEGGVRIVEQPDFHRQLQRIRA 341 (407)
T ss_pred cCCCEEEEECCc-hHHHHHHHHHHHCCCEEEEecCCCCChHHHHHHHhhcCCCCeEEeCCCHHHHHHHHHh
Confidence 345678889997 3444333 669999999998876554321100001112223 578887777654
No 383
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=24.73 E-value=2.6e+02 Score=22.34 Aligned_cols=23 Identities=9% Similarity=0.251 Sum_probs=15.0
Q ss_pred chHHHHHHHHHhcCCCCCCEEEEEcC
Q 025117 41 ASSFAAAAYLKSIDFPKDKKVYVVGE 66 (257)
Q Consensus 41 ts~~~~~~~l~~~~~~~~~~v~vlg~ 66 (257)
..+..+++||.+.+. +++.+++.
T Consensus 104 ~~~~~~~~~l~~~g~---~~i~~i~~ 126 (264)
T cd01537 104 QAGYLAGEHLAEKGH---RRIALLAG 126 (264)
T ss_pred HHHHHHHHHHHHhcC---CcEEEEEC
Confidence 456778888887642 56666643
No 384
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=24.68 E-value=55 Score=30.28 Aligned_cols=47 Identities=23% Similarity=0.309 Sum_probs=29.1
Q ss_pred hhccCC-cEEEEeCCCCcCHHHHHHHHHhCCCCCCCC-c-eechHHHHHHHHHhc
Q 025117 2 LRSKGK-RLVFVTNNSTKSRKQYGKKFETLGLTVTEE-E-IFASSFAAAAYLKSI 53 (257)
Q Consensus 2 L~~~g~-~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~-~-i~ts~~~~~~~l~~~ 53 (257)
|++.|+ ++.++|||. + ....|+..||+|... . .+.....-..||+.+
T Consensus 376 L~dLGI~~irLLTNNp----~-K~~~L~~~GieVve~vp~~~~~~~~n~~Yl~tK 425 (450)
T PLN02831 376 LRDLGVRTMRLMTNNP----A-KYTGLKGYGLAVVGRVPLLTPITKENKRYLETK 425 (450)
T ss_pred HHHcCCCEEEECCCCH----H-HHHHHhhCCCEEEEEecccCCCChhhHHHHHHH
Confidence 566665 499999964 2 334588999987521 1 123334457888643
No 385
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=24.58 E-value=3.6e+02 Score=22.65 Aligned_cols=58 Identities=10% Similarity=0.193 Sum_probs=34.8
Q ss_pred CCcEEEEeCCCCcCHHHHHHHHHhCCCCC------------CCCceec-hHHHHHHHHHhcCCCCCCEEEEEcC
Q 025117 6 GKRLVFVTNNSTKSRKQYGKKFETLGLTV------------TEEEIFA-SSFAAAAYLKSIDFPKDKKVYVVGE 66 (257)
Q Consensus 6 g~~~~~lTN~s~~~~~~~~~~L~~~G~~~------------~~~~i~t-s~~~~~~~l~~~~~~~~~~v~vlg~ 66 (257)
+..++|+. +.+.++.+++.|.+.|+.- ..|+|+. +...+...+++... .+..++++|.
T Consensus 164 ~~t~vi~~--~~~~~~~i~~~L~~~g~~~~~~v~v~e~l~~~~E~i~~~tl~~l~~~~~~~~~-~~~~~ivvG~ 234 (257)
T PRK15473 164 QTSMAIFL--SVQRIHRVAERLIAGGYPATTPVAVIYKATWPESQTVRGTLADIAEKVRDAGI-RKTALILVGN 234 (257)
T ss_pred CCeEEEEC--CchhHHHHHHHHHHcCCCCCCeEEEEEECCCCCcEEEEEEHHHHHHHHHhcCC-CCCEEEEEch
Confidence 44566665 5566899999999888731 1244543 24445566665433 2356777775
No 386
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=24.57 E-value=68 Score=25.50 Aligned_cols=50 Identities=14% Similarity=0.047 Sum_probs=34.6
Q ss_pred EEEcCChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHHHHHHhh
Q 025117 197 CMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKAAA 256 (257)
Q Consensus 197 ~~IGD~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~~~l~~~ 256 (257)
++|.|++ .-+..+...|+.+|+..+..... ...-..+.+..|+.+++..+
T Consensus 139 vlIDD~~-~n~~~~~~~g~~~iLfd~p~Nr~---------~~~~~Rv~~W~ei~~~i~~~ 188 (191)
T PF06941_consen 139 VLIDDRP-HNLEQFANAGIPVILFDQPYNRD---------ESNFPRVNNWEEIEDLILSS 188 (191)
T ss_dssp EEEESSS-HHHSS-SSESSEEEEE--GGGTT-----------TSEEE-STTSHHHHHHHT
T ss_pred EEecCCh-HHHHhccCCCceEEEEcCCCCCC---------CCCCccCCCHHHHHHHHHhc
Confidence 8999995 77888889999999997754322 12567799999998887543
No 387
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=24.35 E-value=38 Score=28.43 Aligned_cols=40 Identities=28% Similarity=0.282 Sum_probs=28.0
Q ss_pred ChhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceechHH
Q 025117 1 MLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFASSF 44 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts~~ 44 (257)
.||+.|..+.++||-..+.+ .-|..+|+.---|.+++|..
T Consensus 124 ~lR~~g~~l~iisN~d~r~~----~~l~~~~l~~~fD~vv~S~e 163 (237)
T KOG3085|consen 124 KLRKKGTILGIISNFDDRLR----LLLLPLGLSAYFDFVVESCE 163 (237)
T ss_pred HHHhCCeEEEEecCCcHHHH----HHhhccCHHHhhhhhhhhhh
Confidence 37889988888999665444 55667888744567776654
No 388
>PRK14059 hypothetical protein; Provisional
Probab=24.23 E-value=4.3e+02 Score=22.20 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=22.7
Q ss_pred HHHHHHHhcCCCCCCEEEEEcCHHHHHHHHHcCC
Q 025117 45 AAAAYLKSIDFPKDKKVYVVGEDGILKELELAGF 78 (257)
Q Consensus 45 ~~~~~l~~~~~~~~~~v~vlg~~~~~~~l~~~g~ 78 (257)
.+...|++.+ .+++++-|+..+...|-+.|+
T Consensus 169 ~~l~~L~~~g---~~~vlveGG~~l~~~fl~~~L 199 (251)
T PRK14059 169 AAVAALAARG---LRRILCEGGPTLLGQLLAADL 199 (251)
T ss_pred HHHHHHHhCC---CCEEEEechHHHHHHHHHcCC
Confidence 3445566544 368999999999888888774
No 389
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=24.22 E-value=3.9e+02 Score=21.62 Aligned_cols=72 Identities=17% Similarity=0.148 Sum_probs=38.3
Q ss_pred CCcEEEEeCCCC-----cCHHHHHHHHHhCCCCCCCCcee-------chHHHHHHHHHhcCCCCCCEEEEEcCH----HH
Q 025117 6 GKRLVFVTNNST-----KSRKQYGKKFETLGLTVTEEEIF-------ASSFAAAAYLKSIDFPKDKKVYVVGED----GI 69 (257)
Q Consensus 6 g~~~~~lTN~s~-----~~~~~~~~~L~~~G~~~~~~~i~-------ts~~~~~~~l~~~~~~~~~~v~vlg~~----~~ 69 (257)
.+++.+++.+.. ...+.+.+.|++.|++.....+. .+...+..+|+++ +...+.+..++ ++
T Consensus 116 ~~~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~ai~~~~d~~a~~~ 192 (268)
T cd01575 116 YRRIGFLGARMDDTRAQQRLEGFRAALRAAGLDPPLVVTTPEPSSFALGRELLAELLARW---PDLDAVFCSNDDLALGA 192 (268)
T ss_pred CCcEEEecCCCCcccHHHHHHHHHHHHHHcCCCCCceeEeccCCCHHHHHHHHHHHHhCC---CCCCEEEECCcHHHHHH
Confidence 456888877553 11245666777788753322111 1234555666543 12344445544 45
Q ss_pred HHHHHHcCCee
Q 025117 70 LKELELAGFQY 80 (257)
Q Consensus 70 ~~~l~~~g~~~ 80 (257)
.+.+++.|+++
T Consensus 193 ~~~l~~~g~~~ 203 (268)
T cd01575 193 LFECQRRGISV 203 (268)
T ss_pred HHHHHHhCCCC
Confidence 67777877653
No 390
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=24.21 E-value=21 Score=31.02 Aligned_cols=45 Identities=7% Similarity=-0.152 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHcCCCceEEEecCCCccccCCCcccccCchHHHHH
Q 025117 118 YYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAF 163 (257)
Q Consensus 118 ~~~~~~~~~~l~~~~~~~~i~tn~d~~~~~~~~~~~~~~g~~~~~i 163 (257)
-+.+.+++..|++.+-..+|+||+++... ...+...|+..+|+.+
T Consensus 150 dp~V~EtL~eLkekGikLaIvTNg~Re~v-~~~Le~lgL~~yFDvI 194 (303)
T PHA03398 150 DPFVYDSLDELKERGCVLVLWSYGNREHV-VHSLKETKLEGYFDII 194 (303)
T ss_pred ChhHHHHHHHHHHCCCEEEEEcCCChHHH-HHHHHHcCCCccccEE
Confidence 36678889999874445678999877543 3344555666565544
No 391
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=24.20 E-value=1.3e+02 Score=20.80 Aligned_cols=27 Identities=19% Similarity=0.344 Sum_probs=16.9
Q ss_pred CCcEEEEeCCCCcCHHHHHHHHHhCCCC
Q 025117 6 GKRLVFVTNNSTKSRKQYGKKFETLGLT 33 (257)
Q Consensus 6 g~~~~~lTN~s~~~~~~~~~~L~~~G~~ 33 (257)
+++++++.+++. .....+..|+.+|++
T Consensus 65 ~~~vv~~c~~g~-~s~~~a~~L~~~G~~ 91 (105)
T cd01525 65 GKIIVIVSHSHK-HAALFAAFLVKCGVP 91 (105)
T ss_pred CCeEEEEeCCCc-cHHHHHHHHHHcCCC
Confidence 566777776443 345566677777774
No 392
>PRK05942 aspartate aminotransferase; Provisional
Probab=24.17 E-value=5.1e+02 Score=22.99 Aligned_cols=65 Identities=12% Similarity=0.082 Sum_probs=35.2
Q ss_pred cCHHHHHHHHHh-CCCCCCCCc-ee-chHHHHHH-HHHhcCCCCCCEEEEEcCH--HHHHHHHHcCCeeeC
Q 025117 18 KSRKQYGKKFET-LGLTVTEEE-IF-ASSFAAAA-YLKSIDFPKDKKVYVVGED--GILKELELAGFQYLG 82 (257)
Q Consensus 18 ~~~~~~~~~L~~-~G~~~~~~~-i~-ts~~~~~~-~l~~~~~~~~~~v~vlg~~--~~~~~l~~~g~~~~~ 82 (257)
.-++.+++.+.+ .|+++++++ |+ |+|...+- .+-..-..++.+|++.... .....+...|.++..
T Consensus 77 ~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~ 147 (394)
T PRK05942 77 SFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAYVNPGDVVLVPSPAYPAHFRGPLIAGAQIYP 147 (394)
T ss_pred HHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEE
Confidence 445667777754 488888874 64 55432222 2221113456777665432 344555667876654
No 393
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=24.14 E-value=83 Score=27.79 Aligned_cols=31 Identities=16% Similarity=0.141 Sum_probs=22.9
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCC
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 33 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~ 33 (257)
+++.|..+.+.||++..+ ++.+++|.+.|++
T Consensus 77 ~~~~g~~~~l~TNG~ll~-~e~~~~L~~~g~~ 107 (358)
T TIGR02109 77 ARRLGLYTNLITSGVGLT-EARLDALADAGLD 107 (358)
T ss_pred HHHcCCeEEEEeCCccCC-HHHHHHHHhCCCC
Confidence 456788888999976555 5667788888764
No 394
>PRK04280 arginine repressor; Provisional
Probab=24.04 E-value=34 Score=26.43 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=21.2
Q ss_pred EEeCCCCcCHHHHHHHHHhCCCCCC
Q 025117 11 FVTNNSTKSRKQYGKKFETLGLTVT 35 (257)
Q Consensus 11 ~lTN~s~~~~~~~~~~L~~~G~~~~ 35 (257)
+++|+.-.+.+++.+.|++.||.++
T Consensus 12 iI~~~~I~tQeeL~~~L~~~Gi~vT 36 (148)
T PRK04280 12 IITNNEIETQDELVDRLREEGFNVT 36 (148)
T ss_pred HHHhCCCCCHHHHHHHHHHcCCCee
Confidence 4677788899999999999999865
No 395
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=23.87 E-value=6e+02 Score=23.72 Aligned_cols=64 Identities=20% Similarity=0.202 Sum_probs=34.0
Q ss_pred cCHHHHHHHHHhCCC-CCCCCceech-HHHHHHHH-HhcCCCCCCEEEEEcCH--HHHHHHHHcCCeee
Q 025117 18 KSRKQYGKKFETLGL-TVTEEEIFAS-SFAAAAYL-KSIDFPKDKKVYVVGED--GILKELELAGFQYL 81 (257)
Q Consensus 18 ~~~~~~~~~L~~~G~-~~~~~~i~ts-~~~~~~~l-~~~~~~~~~~v~vlg~~--~~~~~l~~~g~~~~ 81 (257)
..++.+++.+++.|. .+++++|+.. |..-+-++ -+.-..+|..|.+-... .....++..|.+++
T Consensus 189 ~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~~~l~~~Gd~Vli~~P~y~~y~~~~~~~g~~~v 257 (517)
T PRK13355 189 SARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTACVNLAGGTAV 257 (517)
T ss_pred HHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHHHHhCCCCCEEEEcCCCCcCHHHHHHHCCCEEE
Confidence 346777777776666 4778887643 33222222 11112356666664322 34555566676654
No 396
>PRK05066 arginine repressor; Provisional
Probab=23.62 E-value=41 Score=26.25 Aligned_cols=49 Identities=14% Similarity=0.219 Sum_probs=32.7
Q ss_pred EEeCCCCcCHHHHHHHHHhCCCC-CCCCceechHHHHHHHHHhcCC-----CCCCEEEEEcC
Q 025117 11 FVTNNSTKSRKQYGKKFETLGLT-VTEEEIFASSFAAAAYLKSIDF-----PKDKKVYVVGE 66 (257)
Q Consensus 11 ~lTN~s~~~~~~~~~~L~~~G~~-~~~~~i~ts~~~~~~~l~~~~~-----~~~~~v~vlg~ 66 (257)
+++|+.-.+.+++.+.|++.||+ ++. ++..++ |++.+. ..|+.+|.+-.
T Consensus 17 iI~~~~I~tQeeL~~~L~~~Gi~~vTQ------ATiSRD-ikeL~lvKv~~~~G~~~Y~l~~ 71 (156)
T PRK05066 17 LLKEEKFGSQGEIVTALQEQGFDNINQ------SKVSRM-LTKFGAVRTRNAKMEMVYCLPA 71 (156)
T ss_pred HHhhCCCCCHHHHHHHHHHCCCCeecH------HHHHHH-HHHcCCEEeeCCCCCEEEEeCC
Confidence 57788999999999999999998 653 233333 555442 12455666643
No 397
>PRK07568 aspartate aminotransferase; Provisional
Probab=23.56 E-value=5.1e+02 Score=22.83 Aligned_cols=65 Identities=15% Similarity=0.199 Sum_probs=35.4
Q ss_pred cCHHHHHHHHHhCCCCCCCCcee-chHHHHH-HHHHhcCCCCCCEEEEEcC--HHHHHHHHHcCCeeeC
Q 025117 18 KSRKQYGKKFETLGLTVTEEEIF-ASSFAAA-AYLKSIDFPKDKKVYVVGE--DGILKELELAGFQYLG 82 (257)
Q Consensus 18 ~~~~~~~~~L~~~G~~~~~~~i~-ts~~~~~-~~l~~~~~~~~~~v~vlg~--~~~~~~l~~~g~~~~~ 82 (257)
..++.+++.+...|+.+++++|+ |++...+ ..+-..-..++.+|++... ......++..|.+...
T Consensus 70 ~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~ 138 (397)
T PRK07568 70 ELREAFAKYYKKWGIDVEPDEILITNGGSEAILFAMMAICDPGDEILVPEPFYANYNGFATSAGVKIVP 138 (397)
T ss_pred HHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHHHHHhcCCCCEEEEecCCCccHHHHHHHcCCEEEE
Confidence 34466677777778888887765 4443322 2222211245667776542 2344455667876553
No 398
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=23.46 E-value=2.9e+02 Score=22.20 Aligned_cols=30 Identities=13% Similarity=0.060 Sum_probs=24.4
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCC
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 33 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~ 33 (257)
|+.+|..++++- +..+.+++.+...+.+.+
T Consensus 108 l~~~G~~vi~LG--~~vp~e~~v~~~~~~~pd 137 (197)
T TIGR02370 108 LRANGFDVIDLG--RDVPIDTVVEKVKKEKPL 137 (197)
T ss_pred HHhCCcEEEECC--CCCCHHHHHHHHHHcCCC
Confidence 678899998884 567788899988887776
No 399
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=23.32 E-value=77 Score=25.55 Aligned_cols=29 Identities=21% Similarity=0.182 Sum_probs=18.9
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCC
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 33 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~ 33 (257)
|++.|.++++.|..+.. .+.+.+..+|++
T Consensus 30 l~~~g~~~~~~TGR~~~---~~~~~~~~l~~~ 58 (215)
T TIGR01487 30 AEKKGIPVSLVTGNTVP---FARALAVLIGTS 58 (215)
T ss_pred HHHCCCEEEEEcCCcch---hHHHHHHHhCCC
Confidence 67789999999885544 444444455554
No 400
>KOG3483 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.27 E-value=84 Score=21.25 Aligned_cols=39 Identities=18% Similarity=0.352 Sum_probs=32.2
Q ss_pred CCCcHHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcC
Q 025117 175 GKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGG 214 (257)
Q Consensus 175 gKP~p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG 214 (257)
+-|...+++.+.+.+.+++....+|-.+ --.|-.|+.+|
T Consensus 36 stpftavlkfaaeefkvpaatsaiitnd-giginpaq~ag 74 (94)
T KOG3483|consen 36 STPFTAVLKFAAEEFKVPAATSAIITND-GIGINPAQTAG 74 (94)
T ss_pred CCchHHHHHHHHHHccCCccceeEEecC-ccccCcccccc
Confidence 7888999999999999998877766666 46787888777
No 401
>PF03948 Ribosomal_L9_C: Ribosomal protein L9, C-terminal domain; InterPro: IPR020069 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L9 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L9 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins grouped on the basis of sequence similarities [, ]. The crystal structure of Bacillus stearothermophilus L9 shows the 149-residue protein comprises two globular domains connected by a rigid linker []. Each domain contains an rRNA binding site, and the protein functions as a structural protein in the large subunit of the ribosome. The C-terminal domain consists of two loops, an alpha-helix and a three-stranded mixed parallel, anti-parallel beta-sheet packed against the central alpha-helix. The long central alpha-helix is exposed to solvent in the middle and participates in the hydrophobic cores of the two domains at both ends. ; PDB: 3D5B_I 3PYV_H 3F1H_I 3PYR_H 3MRZ_H 1VSP_G 3MS1_H 1VSA_G 3PYT_H 2WH4_I ....
Probab=23.17 E-value=93 Score=21.56 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=21.5
Q ss_pred CcCHHHHHHHHHhC-CCCCCCCceec
Q 025117 17 TKSRKQYGKKFETL-GLTVTEEEIFA 41 (257)
Q Consensus 17 ~~~~~~~~~~L~~~-G~~~~~~~i~t 41 (257)
+-+..++++.|.+. |+.++..+|..
T Consensus 31 SVt~~dIa~~l~~~~g~~Idk~~I~l 56 (87)
T PF03948_consen 31 SVTSKDIAKALKEQTGIEIDKKKIEL 56 (87)
T ss_dssp EBSHHHHHHHHHHCCSSSSSSSSBCS
T ss_pred CcCHHHHHHHHHHhhCCeEeccEEEC
Confidence 57889999999986 99999988863
No 402
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=23.03 E-value=1.5e+02 Score=20.04 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=17.5
Q ss_pred cCCcEEEEeCCCCcCHHHHHHHHHhCCCC
Q 025117 5 KGKRLVFVTNNSTKSRKQYGKKFETLGLT 33 (257)
Q Consensus 5 ~g~~~~~lTN~s~~~~~~~~~~L~~~G~~ 33 (257)
.+++++|+.+ +.......+..|.++|++
T Consensus 55 ~~~~ivv~c~-~g~~s~~a~~~l~~~G~~ 82 (96)
T cd01444 55 RDRPVVVYCY-HGNSSAQLAQALREAGFT 82 (96)
T ss_pred CCCCEEEEeC-CCChHHHHHHHHHHcCCc
Confidence 3566777777 444455566667777764
No 403
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=23.02 E-value=5.4e+02 Score=22.87 Aligned_cols=65 Identities=9% Similarity=0.035 Sum_probs=38.0
Q ss_pred cCHHHHHHHHHhCCCCCCCCcee-chHHHHHHHH-HhcCCCCCCEEEEEcC--HHHHHHHHHcCCeeeC
Q 025117 18 KSRKQYGKKFETLGLTVTEEEIF-ASSFAAAAYL-KSIDFPKDKKVYVVGE--DGILKELELAGFQYLG 82 (257)
Q Consensus 18 ~~~~~~~~~L~~~G~~~~~~~i~-ts~~~~~~~l-~~~~~~~~~~v~vlg~--~~~~~~l~~~g~~~~~ 82 (257)
..++.+++.+.+.|..+++++|+ |++..-+-++ -..-..++++|.+... ......++..|+++..
T Consensus 77 ~lr~aia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~v~i~~P~y~~~~~~~~~~g~~v~~ 145 (401)
T TIGR01264 77 SAREAIASYYHNPDGPIEADDVVLCSGCSHAIEMCIAALANAGQNILVPRPGFPLYETLAESMGIEVKL 145 (401)
T ss_pred HHHHHHHHHHhhcCCCCCHHHEEECcChHHHHHHHHHHhCCCCCEEEEeCCCChhHHHHHHHcCCEEEE
Confidence 44577888887777778888874 5544322222 1111234566666533 2456667778877653
No 404
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=22.91 E-value=4e+02 Score=27.05 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=25.7
Q ss_pred ChhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCcee
Q 025117 1 MLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIF 40 (257)
Q Consensus 1 ~L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ 40 (257)
.|+++|+++.++|+....+...++ ++.|+.-..++++
T Consensus 539 ~l~~~Gi~v~miTGD~~~tA~~ia---~~~Gi~~~~~~~v 575 (884)
T TIGR01522 539 TLITGGVRIIMITGDSQETAVSIA---RRLGMPSKTSQSV 575 (884)
T ss_pred HHHHCCCeEEEECCCCHHHHHHHH---HHcCCCCCCCcee
Confidence 378899999999997766666655 4567754333443
No 405
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=22.74 E-value=1.6e+02 Score=20.08 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=18.4
Q ss_pred CCcEEEEeCCCCcC-HHHHHHHHHhCCCC
Q 025117 6 GKRLVFVTNNSTKS-RKQYGKKFETLGLT 33 (257)
Q Consensus 6 g~~~~~lTN~s~~~-~~~~~~~L~~~G~~ 33 (257)
..+++++..+..++ ....+..|.++|+.
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~L~~~G~~ 78 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARRLSELGYT 78 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCcc
Confidence 55777777754443 45666777888875
No 406
>PRK00075 cbiD cobalt-precorrin-6A synthase; Reviewed
Probab=22.56 E-value=1.5e+02 Score=26.63 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=38.6
Q ss_pred CCcHHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHHHcCCeEEEEcc
Q 025117 176 KPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQNGGCKTLLVLS 222 (257)
Q Consensus 176 KP~p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~aG~~ti~V~~ 222 (257)
-|-..-.+++.+.++++.+.++.+||-+-.=+..|...|++.+++..
T Consensus 207 ~~G~~ge~~a~~~~~l~~~~~V~~gnfiG~~L~~A~~~g~~~i~l~G 253 (361)
T PRK00075 207 VTGNNGEDYARKLLGLPEDAIIKMGNFVGPMLKAAARLGVKKVLLVG 253 (361)
T ss_pred ccChHHHHHHHHhcCCChhhEEEeehhHHHHHHHHHHcCCCEEEEEe
Confidence 44455566777778999999999999988888999999999998864
No 407
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=22.50 E-value=2e+02 Score=23.24 Aligned_cols=33 Identities=18% Similarity=0.370 Sum_probs=24.3
Q ss_pred CcCHHHHHHHHHhCCCCCCCCceechHHHHHHHHHhcCC
Q 025117 17 TKSRKQYGKKFETLGLTVTEEEIFASSFAAAAYLKSIDF 55 (257)
Q Consensus 17 ~~~~~~~~~~L~~~G~~~~~~~i~ts~~~~~~~l~~~~~ 55 (257)
......++++|.++|+.+- -|++ ++.||++.++
T Consensus 10 K~~l~~lAk~L~~lGf~I~----AT~G--TAk~L~e~GI 42 (187)
T cd01421 10 KTGLVEFAKELVELGVEIL----STGG--TAKFLKEAGI 42 (187)
T ss_pred cccHHHHHHHHHHCCCEEE----EccH--HHHHHHHcCC
Confidence 4556899999999999752 2333 6789988765
No 408
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=22.49 E-value=77 Score=27.13 Aligned_cols=33 Identities=15% Similarity=0.340 Sum_probs=26.3
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCCC
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTV 34 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~ 34 (257)
|++.|-.|.+.+.|..-+.++++..|.+.|+++
T Consensus 63 L~a~GAeV~~~~sNplSTQDdvaAAL~~~Gi~V 95 (268)
T PF05221_consen 63 LKALGAEVRWTGSNPLSTQDDVAAALAEEGIPV 95 (268)
T ss_dssp HHHTTEEEEEEESSTTT--HHHHHHHHHTTEEE
T ss_pred HHHcCCeEEEecCCCcccchHHHHHhccCCceE
Confidence 667888888888888888889999999888886
No 409
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=22.32 E-value=1.4e+02 Score=20.14 Aligned_cols=27 Identities=11% Similarity=0.086 Sum_probs=18.5
Q ss_pred cCCcEEEEeCCCCcCHHHHHHHHHhCCC
Q 025117 5 KGKRLVFVTNNSTKSRKQYGKKFETLGL 32 (257)
Q Consensus 5 ~g~~~~~lTN~s~~~~~~~~~~L~~~G~ 32 (257)
.+++++++.++ +......+..|+++|+
T Consensus 50 ~~~~vvl~c~~-g~~a~~~a~~L~~~G~ 76 (90)
T cd01524 50 KDKEIIVYCAV-GLRGYIAARILTQNGF 76 (90)
T ss_pred CCCcEEEEcCC-ChhHHHHHHHHHHCCC
Confidence 35677888774 3445566777888887
No 410
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=22.28 E-value=1.6e+02 Score=24.36 Aligned_cols=41 Identities=32% Similarity=0.477 Sum_probs=31.4
Q ss_pred hhccCCcEEEEeCCCCc--CHHHHHHHHHhCCCCCCCCceech
Q 025117 2 LRSKGKRLVFVTNNSTK--SRKQYGKKFETLGLTVTEEEIFAS 42 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~--~~~~~~~~L~~~G~~~~~~~i~ts 42 (257)
+++.|.+.+++..-+++ +++++.++++++|+++...+++-|
T Consensus 72 ~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~~P~~~Cs 114 (217)
T PF02593_consen 72 AKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEVEFPKPFCS 114 (217)
T ss_pred HHHcCCCEEEEecCCCccchHHHHHHHHHhcCceeecCccccc
Confidence 34588898888887766 678999999999998765555543
No 411
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.24 E-value=88 Score=27.70 Aligned_cols=58 Identities=9% Similarity=0.178 Sum_probs=41.7
Q ss_pred HHHHhCCCCCcEEEE-cC---ChhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECCh
Q 025117 185 LANKFGIQKSQICMV-GD---RLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKI 246 (257)
Q Consensus 185 ~~~~~~~~~~~~~~I-GD---~~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l 246 (257)
.|.+.++.|.+.+-| |= - .--|+.|++.|++...+.++..+.++.-+ ...+|.++++.
T Consensus 173 pLk~~g~~pG~~vgI~GlGGLG-h~aVq~AKAMG~rV~vis~~~~kkeea~~---~LGAd~fv~~~ 234 (360)
T KOG0023|consen 173 PLKRSGLGPGKWVGIVGLGGLG-HMAVQYAKAMGMRVTVISTSSKKKEEAIK---SLGADVFVDST 234 (360)
T ss_pred hhHHcCCCCCcEEEEecCcccc-hHHHHHHHHhCcEEEEEeCCchhHHHHHH---hcCcceeEEec
Confidence 466788888875543 31 2 45799999999999999999866666432 25677777766
No 412
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=22.14 E-value=26 Score=23.45 Aligned_cols=36 Identities=17% Similarity=0.285 Sum_probs=25.2
Q ss_pred CCCcHHHHHHHHHHhCCCCCcEEEEcCChhhHHHHHH
Q 025117 175 GKPSTFMMDYLANKFGIQKSQICMVGDRLDTDILFGQ 211 (257)
Q Consensus 175 gKP~p~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~ 211 (257)
.-|-...++++.+.+.+++..+..|-++ -..|--.+
T Consensus 25 ~apftaVlkfaAeeF~vp~~tsaiItnd-G~GInP~Q 60 (76)
T PF03671_consen 25 EAPFTAVLKFAAEEFKVPPATSAIITND-GVGINPQQ 60 (76)
T ss_dssp TSBHHHHHHHHHHHTTS-SSSEEEEESS-S-EE-TTS
T ss_pred CCchHHHHHHHHHHcCCCCceEEEEecC-Ccccccch
Confidence 4567788899999999999998888766 34443333
No 413
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=22.03 E-value=1.3e+02 Score=20.51 Aligned_cols=27 Identities=15% Similarity=0.410 Sum_probs=17.7
Q ss_pred CCcEEEEeCCCCcCHHHHHHHHHhCCCC
Q 025117 6 GKRLVFVTNNSTKSRKQYGKKFETLGLT 33 (257)
Q Consensus 6 g~~~~~lTN~s~~~~~~~~~~L~~~G~~ 33 (257)
++++++..+++.++ ...+..|+.+|++
T Consensus 56 ~~~iv~~c~~G~rs-~~aa~~L~~~G~~ 82 (95)
T cd01534 56 GARIVLADDDGVRA-DMTASWLAQMGWE 82 (95)
T ss_pred CCeEEEECCCCChH-HHHHHHHHHcCCE
Confidence 56777777754444 4556667778775
No 414
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=22.01 E-value=3.3e+02 Score=26.62 Aligned_cols=57 Identities=16% Similarity=0.127 Sum_probs=33.3
Q ss_pred HHHHHhCCCCCCCC-------------ceechHHHHHHHHHhcC-CCCCCEEEEEcC----HHHHHHHHHcCCeee
Q 025117 24 GKKFETLGLTVTEE-------------EIFASSFAAAAYLKSID-FPKDKKVYVVGE----DGILKELELAGFQYL 81 (257)
Q Consensus 24 ~~~L~~~G~~~~~~-------------~i~ts~~~~~~~l~~~~-~~~~~~v~vlg~----~~~~~~l~~~g~~~~ 81 (257)
++.|++.||....- .-++|.. +...+.... ...+++|+++.+ +.+.+.|++.|+.+.
T Consensus 92 a~aL~~~Gi~~~~~~~~~P~~~~~~p~~~~~se~-Ll~~l~~~~~~~~g~rVLi~rG~~gr~~L~~~L~~~Ga~V~ 166 (656)
T PRK06975 92 VAALARHGIAAPAHRVIAPDAPADGGEARYDSEA-LFAEIDAAFGALAGKRVLIVRGDGGREWLAERLREAGAEVE 166 (656)
T ss_pred HHHHHHcCCCCceeeccccccccCCCCCccchHH-HHHhHHHhccCCCCCEEEEEcCCCCcHHHHHHHHHCCCEEE
Confidence 45677889875433 2234433 344444322 024678887744 357788888887764
No 415
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=21.99 E-value=1.3e+02 Score=23.34 Aligned_cols=30 Identities=23% Similarity=0.381 Sum_probs=25.1
Q ss_pred ccCCcEEEEeCCCCcCHHHHHHHHHhCCCCCC
Q 025117 4 SKGKRLVFVTNNSTKSRKQYGKKFETLGLTVT 35 (257)
Q Consensus 4 ~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~ 35 (257)
+.|.+++|+| ...+++++.+++..+|++++
T Consensus 25 ~~g~~v~~~s--~e~~~~~~~~~~~~~g~~~~ 54 (187)
T cd01124 25 ARGEPGLYVT--LEESPEELIENAESLGWDLE 54 (187)
T ss_pred HCCCcEEEEE--CCCCHHHHHHHHHHcCCChH
Confidence 4688998887 66889999999999998853
No 416
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=21.79 E-value=68 Score=29.24 Aligned_cols=47 Identities=26% Similarity=0.321 Sum_probs=28.8
Q ss_pred hhccCC-cEEEEeCCCCcCHHHHHHHHHhCCCCCCCC-c-eechHHHHHHHHHhc
Q 025117 2 LRSKGK-RLVFVTNNSTKSRKQYGKKFETLGLTVTEE-E-IFASSFAAAAYLKSI 53 (257)
Q Consensus 2 L~~~g~-~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~-~-i~ts~~~~~~~l~~~ 53 (257)
|+..|+ ++.++|||. + ....|...||+|... . .+.+..--..||+.+
T Consensus 342 L~~LGv~~irLLTnnp----~-K~~~L~~~GieV~~~v~~~~~~~~~n~~yl~tK 391 (402)
T PRK09311 342 LVDLGVRSMRLLTNNP----R-KIAGLQGYGLHVTERVPLPVRANEENERYLRTK 391 (402)
T ss_pred HHHcCCCEEEECCCCH----H-HHHHHhhCCCEEEEEeccCCCCChhhHHHHHHH
Confidence 566665 499999965 2 334688999987521 1 123334457888643
No 417
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=21.78 E-value=1.4e+02 Score=21.12 Aligned_cols=27 Identities=11% Similarity=0.113 Sum_probs=14.4
Q ss_pred CCcEEEEeCCCCcCHHHHHHHHHhCCCC
Q 025117 6 GKRLVFVTNNSTKSRKQYGKKFETLGLT 33 (257)
Q Consensus 6 g~~~~~lTN~s~~~~~~~~~~L~~~G~~ 33 (257)
..+++|..+++. .....+..|.++|++
T Consensus 58 ~~~vvlyC~~G~-rS~~aa~~L~~~G~~ 84 (101)
T TIGR02981 58 NDTVKLYCNAGR-QSGMAKDILLDMGYT 84 (101)
T ss_pred CCeEEEEeCCCH-HHHHHHHHHHHcCCC
Confidence 345666666433 333445566666664
No 418
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=21.64 E-value=2.6e+02 Score=24.04 Aligned_cols=70 Identities=17% Similarity=0.260 Sum_probs=37.2
Q ss_pred CCcEEEEe-CCCCc---CHHHHHHHHHhCCCCCCCCceechH-----HHHHHHHHhcCCCCCCEEEEEcCH----HHHHH
Q 025117 6 GKRLVFVT-NNSTK---SRKQYGKKFETLGLTVTEEEIFASS-----FAAAAYLKSIDFPKDKKVYVVGED----GILKE 72 (257)
Q Consensus 6 g~~~~~lT-N~s~~---~~~~~~~~L~~~G~~~~~~~i~ts~-----~~~~~~l~~~~~~~~~~v~vlg~~----~~~~~ 72 (257)
++++.++. +++.. ..+.+.+.+++.|+.+..+..+... ..+.+ +...+ ..-|++.+.. .+...
T Consensus 132 ~~~~~~i~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~-i~~~~---pdaV~~~~~~~~a~~~~~~ 207 (341)
T cd06341 132 GTRAVALVTALSAAVSAAAALLARSLAAAGVSVAGIVVITATAPDPTPQAQQ-AAAAG---ADAIITVLDAAVCASVLKA 207 (341)
T ss_pred CcEEEEEEeCCcHHHHHHHHHHHHHHHHcCCccccccccCCCCCCHHHHHHH-HHhcC---CCEEEEecChHHHHHHHHH
Confidence 56677664 43312 2345666778899987554444332 22333 22222 2456555544 35566
Q ss_pred HHHcCCe
Q 025117 73 LELAGFQ 79 (257)
Q Consensus 73 l~~~g~~ 79 (257)
+++.|+.
T Consensus 208 ~~~~G~~ 214 (341)
T cd06341 208 VRAAGLT 214 (341)
T ss_pred HHHcCCC
Confidence 7777764
No 419
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=21.62 E-value=3.6e+02 Score=21.92 Aligned_cols=75 Identities=21% Similarity=0.243 Sum_probs=39.8
Q ss_pred hccC-CcEEEEeCCCCc-----CHHHHHHHHHhCCCCCCCCcee----c---hHHHHHHHHHhcCCCCCCEEEEEcCH--
Q 025117 3 RSKG-KRLVFVTNNSTK-----SRKQYGKKFETLGLTVTEEEIF----A---SSFAAAAYLKSIDFPKDKKVYVVGED-- 67 (257)
Q Consensus 3 ~~~g-~~~~~lTN~s~~-----~~~~~~~~L~~~G~~~~~~~i~----t---s~~~~~~~l~~~~~~~~~~v~vlg~~-- 67 (257)
.+.| .++.|++..... ..+.+.+.+++.|+++....+. + ....+..+|++.. .-...+..++
T Consensus 113 ~~~G~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~ai~~~~d~~ 189 (269)
T cd06275 113 IELGHRRIGCITGPLEKAPAQQRLAGFRRAMAEAGLPVNPGWIVEGDFECEGGYEAMQRLLAQPK---RPTAVFCGNDLM 189 (269)
T ss_pred HHCCCceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCHHHhccCCCChHHHHHHHHHHHcCCC---CCcEEEECChHH
Confidence 3445 568888643221 2355677787888875432221 1 1234556665421 1234444444
Q ss_pred --HHHHHHHHcCCee
Q 025117 68 --GILKELELAGFQY 80 (257)
Q Consensus 68 --~~~~~l~~~g~~~ 80 (257)
++.+.+++.|+++
T Consensus 190 a~g~~~~l~~~g~~v 204 (269)
T cd06275 190 AMGALCAAQEAGLRV 204 (269)
T ss_pred HHHHHHHHHHcCCCC
Confidence 4567788888754
No 420
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=21.54 E-value=1.9e+02 Score=24.81 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=21.8
Q ss_pred cEEEEcCChhhHHHHHHHcCCeEEEEccCC
Q 025117 195 QICMVGDRLDTDILFGQNGGCKTLLVLSGV 224 (257)
Q Consensus 195 ~~~~IGD~~~~Di~~A~~aG~~ti~V~~G~ 224 (257)
+++..-+. ..|++.|.++|.+.+.+..+.
T Consensus 69 ~~~a~~~~-~~~~~~A~~~g~~~i~i~~~~ 97 (280)
T cd07945 69 EVLGFVDG-DKSVDWIKSAGAKVLNLLTKG 97 (280)
T ss_pred EEEEecCc-HHHHHHHHHCCCCEEEEEEeC
Confidence 44434577 689999999999988876543
No 421
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=21.47 E-value=1.5e+02 Score=19.38 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=17.3
Q ss_pred cCCcEEEEeCCCCcCHHHHHHHHHhCCCC
Q 025117 5 KGKRLVFVTNNSTKSRKQYGKKFETLGLT 33 (257)
Q Consensus 5 ~g~~~~~lTN~s~~~~~~~~~~L~~~G~~ 33 (257)
.+.+++|+.++ +......+..|+++|+.
T Consensus 49 ~~~~vv~~c~~-~~~a~~~~~~l~~~G~~ 76 (89)
T cd00158 49 KDKPIVVYCRS-GNRSARAAKLLRKAGGT 76 (89)
T ss_pred CCCeEEEEeCC-CchHHHHHHHHHHhCcc
Confidence 45567777775 34445666667777643
No 422
>COG5015 Uncharacterized conserved protein [Function unknown]
Probab=21.37 E-value=78 Score=23.62 Aligned_cols=13 Identities=38% Similarity=0.749 Sum_probs=11.0
Q ss_pred cCCcEEEEeCCCC
Q 025117 5 KGKRLVFVTNNST 17 (257)
Q Consensus 5 ~g~~~~~lTN~s~ 17 (257)
.|.+++|+|||+.
T Consensus 35 ~g~KlYfcTantK 47 (132)
T COG5015 35 EGEKLYFCTANTK 47 (132)
T ss_pred eCCEEEEEeCCCh
Confidence 4788999999883
No 423
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=21.34 E-value=2.1e+02 Score=19.59 Aligned_cols=16 Identities=13% Similarity=0.387 Sum_probs=13.0
Q ss_pred HHHHHHHHHcCCeeeC
Q 025117 67 DGILKELELAGFQYLG 82 (257)
Q Consensus 67 ~~~~~~l~~~g~~~~~ 82 (257)
..+++.|++.|+.++.
T Consensus 11 s~v~~~L~~~GyeVv~ 26 (80)
T PF03698_consen 11 SNVKEALREKGYEVVD 26 (80)
T ss_pred hHHHHHHHHCCCEEEe
Confidence 3578899999999874
No 424
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=21.08 E-value=1.6e+02 Score=21.27 Aligned_cols=26 Identities=4% Similarity=0.165 Sum_probs=11.1
Q ss_pred CCcEEEEeCCCCcCHHHHHHHHHhCCC
Q 025117 6 GKRLVFVTNNSTKSRKQYGKKFETLGL 32 (257)
Q Consensus 6 g~~~~~lTN~s~~~~~~~~~~L~~~G~ 32 (257)
.++++++.++. ......+..|+++|+
T Consensus 64 ~~~ivv~C~~G-~rs~~aa~~L~~~G~ 89 (117)
T cd01522 64 DRPVLLLCRSG-NRSIAAAEAAAQAGF 89 (117)
T ss_pred CCeEEEEcCCC-ccHHHHHHHHHHCCC
Confidence 34444444422 233334444444554
No 425
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=21.01 E-value=58 Score=30.14 Aligned_cols=27 Identities=41% Similarity=0.647 Sum_probs=16.4
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHh--CCC
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFET--LGL 32 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~--~G~ 32 (257)
||+.||++.++||+. -.+.+..-+ +|-
T Consensus 195 lr~~GKklFLiTNS~----~~yt~~~M~yl~g~ 223 (448)
T PF05761_consen 195 LRSAGKKLFLITNSP----FDYTNAVMSYLLGP 223 (448)
T ss_dssp HHCCT-EEEEE-SS-----HHHHHHHHHHHCGC
T ss_pred HHhcCceEEEecCCC----CchhhhhhhhccCC
Confidence 789999999999944 445554433 555
No 426
>PHA02554 13 neck protein; Provisional
Probab=20.98 E-value=1.3e+02 Score=26.08 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=31.7
Q ss_pred CCCcCHHHHHHH-HHhCCCC-----CCCCceechHHHHHHHHHhcCCC
Q 025117 15 NSTKSRKQYGKK-FETLGLT-----VTEEEIFASSFAAAAYLKSIDFP 56 (257)
Q Consensus 15 ~s~~~~~~~~~~-L~~~G~~-----~~~~~i~ts~~~~~~~l~~~~~~ 56 (257)
..+.+|+++... |+++|-| ++++||.-+-.-+.++..+.++.
T Consensus 3 ~~~~sp~eLkD~iLRrLGAPii~Ievt~dQi~D~I~rALely~EYH~d 50 (311)
T PHA02554 3 YNPNNPRELKDYILRRLGAPIINVEVTEDQIYDCIQRALELYGEYHYD 50 (311)
T ss_pred CCCCCHHHHHHHHHHhcCCCeeEeecCHHHHHHHHHHHHHHHHHHhcc
Confidence 456777777776 6889987 46789998888888888876543
No 427
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=20.92 E-value=2.8e+02 Score=23.91 Aligned_cols=76 Identities=13% Similarity=0.176 Sum_probs=41.2
Q ss_pred hccC-CcEEEEeCCCCc---CHHHHHHHHHhCCCCCCCCceechH---HHHHHHHHhcCCCCCCEEEEEcCHH----HHH
Q 025117 3 RSKG-KRLVFVTNNSTK---SRKQYGKKFETLGLTVTEEEIFASS---FAAAAYLKSIDFPKDKKVYVVGEDG----ILK 71 (257)
Q Consensus 3 ~~~g-~~~~~lTN~s~~---~~~~~~~~L~~~G~~~~~~~i~ts~---~~~~~~l~~~~~~~~~~v~vlg~~~----~~~ 71 (257)
+..| +++.+++.+... ..+.+.+.+++.|+.+..++.+..+ .-....+.+......+.|++.+... +..
T Consensus 131 ~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~dvvi~~~~~~~~~~~~~ 210 (350)
T cd06366 131 KKFGWRRVATIYEDDDYGSGGLPDLVDALQEAGIEISYRAAFPPSANDDDITDALKKLKEKDSRVIVVHFSPDLARRVFC 210 (350)
T ss_pred HHCCCcEEEEEEEcCcccchhHHHHHHHHHHcCCEEEEEeccCCCCChhHHHHHHHHHhcCCCeEEEEECChHHHHHHHH
Confidence 3334 677777654443 2467778888899997665555442 3344445433211224455555543 233
Q ss_pred HHHHcCC
Q 025117 72 ELELAGF 78 (257)
Q Consensus 72 ~l~~~g~ 78 (257)
.+++.|+
T Consensus 211 ~a~~~g~ 217 (350)
T cd06366 211 EAYKLGM 217 (350)
T ss_pred HHHHcCC
Confidence 4455565
No 428
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=20.91 E-value=96 Score=25.24 Aligned_cols=28 Identities=11% Similarity=0.429 Sum_probs=20.8
Q ss_pred CCcEEEEeCCCCcCHHHHHHHHHhCCCCCC
Q 025117 6 GKRLVFVTNNSTKSRKQYGKKFETLGLTVT 35 (257)
Q Consensus 6 g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~ 35 (257)
|.+++|+|- ..+++++.+.++.+|+++.
T Consensus 48 ge~vlyvs~--ee~~~~l~~~~~s~g~d~~ 75 (226)
T PF06745_consen 48 GEKVLYVSF--EEPPEELIENMKSFGWDLE 75 (226)
T ss_dssp T--EEEEES--SS-HHHHHHHHHTTTS-HH
T ss_pred CCcEEEEEe--cCCHHHHHHHHHHcCCcHH
Confidence 889999994 5788999999999999754
No 429
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=20.89 E-value=1.3e+02 Score=25.86 Aligned_cols=29 Identities=7% Similarity=0.130 Sum_probs=19.6
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCC
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 33 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~ 33 (257)
|+++|.|+.++|++.. .-+...|+.+|+.
T Consensus 133 L~~~GIpv~IvS~G~~---~~Ie~vL~~lgl~ 161 (277)
T TIGR01544 133 LQQHSIPVFIFSAGIG---NVLEEVLRQAGVY 161 (277)
T ss_pred HHHCCCcEEEEeCCcH---HHHHHHHHHcCCC
Confidence 6788999999998554 3344445556763
No 430
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=20.88 E-value=3.8e+02 Score=22.34 Aligned_cols=66 Identities=23% Similarity=0.387 Sum_probs=38.1
Q ss_pred cCCcEEEEeCCCC-cCHHH----HHHHHHhCCCCCCCCceechHHHHHHHHHhcCCCCCCEEEEEcCHH--HHHHHHHcC
Q 025117 5 KGKRLVFVTNNST-KSRKQ----YGKKFETLGLTVTEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDG--ILKELELAG 77 (257)
Q Consensus 5 ~g~~~~~lTN~s~-~~~~~----~~~~L~~~G~~~~~~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~~~--~~~~l~~~g 77 (257)
.+++++|+...|. ...+. +.+.++++|+.+.. +-++... .+.|.+. .-+|+-|.+. +.+.+++.|
T Consensus 30 ~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~--l~~~~d~-~~~l~~a-----d~I~v~GGnt~~l~~~l~~~g 101 (233)
T PRK05282 30 GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTG--IHRVADP-VAAIENA-----EAIFVGGGNTFQLLKQLYERG 101 (233)
T ss_pred CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEE--eccchhh-HHHHhcC-----CEEEECCccHHHHHHHHHHCC
Confidence 5789999998664 34444 55567779997542 2222222 2334332 3567766654 456666666
Q ss_pred C
Q 025117 78 F 78 (257)
Q Consensus 78 ~ 78 (257)
+
T Consensus 102 l 102 (233)
T PRK05282 102 L 102 (233)
T ss_pred c
Confidence 4
No 431
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=20.86 E-value=1.4e+02 Score=19.75 Aligned_cols=16 Identities=13% Similarity=0.108 Sum_probs=8.7
Q ss_pred cCHHHHHHHHHhCCCC
Q 025117 18 KSRKQYGKKFETLGLT 33 (257)
Q Consensus 18 ~~~~~~~~~L~~~G~~ 33 (257)
...-+++..|.++|.+
T Consensus 9 ~ig~E~A~~l~~~g~~ 24 (80)
T PF00070_consen 9 FIGIELAEALAELGKE 24 (80)
T ss_dssp HHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHhCcE
Confidence 3344555666666654
No 432
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=20.67 E-value=1e+02 Score=27.48 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=22.5
Q ss_pred hhccCCcEEEEeCCCCcCHHHHHHHHHhCCCC
Q 025117 2 LRSKGKRLVFVTNNSTKSRKQYGKKFETLGLT 33 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~~~~~~~~~~L~~~G~~ 33 (257)
+++.|..+.+.||++..+. +.+++|.+.|++
T Consensus 86 ~~~~g~~~~i~TNG~ll~~-~~~~~L~~~g~~ 116 (378)
T PRK05301 86 ARELGLYTNLITSGVGLTE-ARLAALKDAGLD 116 (378)
T ss_pred HHHcCCcEEEECCCccCCH-HHHHHHHHcCCC
Confidence 4566888889999766554 556788888764
No 433
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=20.62 E-value=93 Score=25.31 Aligned_cols=14 Identities=36% Similarity=0.515 Sum_probs=10.5
Q ss_pred cCCcEEEEeCCCCc
Q 025117 5 KGKRLVFVTNNSTK 18 (257)
Q Consensus 5 ~g~~~~~lTN~s~~ 18 (257)
..++++++||+-.-
T Consensus 127 ~~k~IvL~TDg~~p 140 (218)
T cd01458 127 SHKRIFLFTNNDDP 140 (218)
T ss_pred cccEEEEECCCCCC
Confidence 46789999996543
No 434
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=20.61 E-value=1.9e+02 Score=24.36 Aligned_cols=63 Identities=8% Similarity=0.114 Sum_probs=40.4
Q ss_pred HHHHHHHHHhCCCCCcEEEE---cCC-hhhHHHHHHHcCCeEEEEccCCCChhhhcCCCCCCCCcEEECChhhHHHHHHh
Q 025117 180 FMMDYLANKFGIQKSQICMV---GDR-LDTDILFGQNGGCKTLLVLSGVTSLSMLQSPNNSIQPDFYTNKISDFLSLKAA 255 (257)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~I---GD~-~~~Di~~A~~aG~~ti~V~~G~~~~~~~~~~~~~~~pd~~~~~l~el~~~l~~ 255 (257)
++=...+++++++ +++- |.+ ...=+.+|+++|+..+.|..... ..+.-++.+++|+.++++.
T Consensus 180 e~n~aL~~~~~i~---~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~-----------~~~~~~~~~~~e~~~~l~~ 245 (248)
T PRK08057 180 ELERALLRQHRID---VVVTKNSGGAGTEAKLEAARELGIPVVMIARPAL-----------PYADREFEDVAELVAWLRH 245 (248)
T ss_pred HHHHHHHHHcCCC---EEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCC-----------CCCCcccCCHHHHHHHHHH
Confidence 3344556777764 3332 441 13458899999999999986531 1122457899999998876
Q ss_pred h
Q 025117 256 A 256 (257)
Q Consensus 256 ~ 256 (257)
.
T Consensus 246 ~ 246 (248)
T PRK08057 246 L 246 (248)
T ss_pred h
Confidence 4
No 435
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=20.55 E-value=1.1e+02 Score=27.91 Aligned_cols=32 Identities=13% Similarity=0.089 Sum_probs=26.2
Q ss_pred hhccCCcEEEE-eCCCCcCHHHHHHHHHhCCCC
Q 025117 2 LRSKGKRLVFV-TNNSTKSRKQYGKKFETLGLT 33 (257)
Q Consensus 2 L~~~g~~~~~l-TN~s~~~~~~~~~~L~~~G~~ 33 (257)
+++.|+++.+. ||++.....+.+++|.++|++
T Consensus 98 lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gld 130 (404)
T TIGR03278 98 LSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGVR 130 (404)
T ss_pred HHhCCCCEEEeCCCCcccCCHHHHHHHHHcCCC
Confidence 56789998885 998877777888889888875
No 436
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=20.38 E-value=2.1e+02 Score=24.97 Aligned_cols=51 Identities=16% Similarity=0.104 Sum_probs=35.4
Q ss_pred CCCcHHHHHHHHHHhCCCCCc-EEEEcCChhh-H---HHHHHHcCCeEEEEccCCC
Q 025117 175 GKPSTFMMDYLANKFGIQKSQ-ICMVGDRLDT-D---ILFGQNGGCKTLLVLSGVT 225 (257)
Q Consensus 175 gKP~p~~~~~~~~~~~~~~~~-~~~IGD~~~~-D---i~~A~~aG~~ti~V~~G~~ 225 (257)
.-|.++.|+..++.+|+.++. +++.+++-.. . ....+.+|++.+.++.|..
T Consensus 84 ~lp~~~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~ 139 (320)
T PLN02723 84 MLPSEEAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGL 139 (320)
T ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCH
Confidence 467889999999999998765 5566544111 1 1335568999888888753
No 437
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=20.31 E-value=2.5e+02 Score=25.47 Aligned_cols=67 Identities=25% Similarity=0.290 Sum_probs=38.2
Q ss_pred EEEEeCCCCcCHHHHHHH-HHhCCCCCCCCceechHHH----HHHHHHhcCCCCCCEEEEEcCHHHH--HHHHHcCCe
Q 025117 9 LVFVTNNSTKSRKQYGKK-FETLGLTVTEEEIFASSFA----AAAYLKSIDFPKDKKVYVVGEDGIL--KELELAGFQ 79 (257)
Q Consensus 9 ~~~lTN~s~~~~~~~~~~-L~~~G~~~~~~~i~ts~~~----~~~~l~~~~~~~~~~v~vlg~~~~~--~~l~~~g~~ 79 (257)
=++|||.. .- -.+++. |-++|--+..|+|+++.+. +-+.+.++ +. .|.+||+-.++.. ...+.+.+.
T Consensus 373 nVlvTttq-Li-palaKvLL~gLg~~fpiENIYSa~kiGKescFerI~~R-Fg-~K~~yvvIgdG~eee~aAK~ln~P 446 (468)
T KOG3107|consen 373 NVLVTTTQ-LI-PALAKVLLYGLGSSFPIENIYSATKIGKESCFERIQSR-FG-RKVVYVVIGDGVEEEQAAKALNMP 446 (468)
T ss_pred EEEEeccc-hh-HHHHHHHHHhcCCcccchhhhhhhhccHHHHHHHHHHH-hC-CceEEEEecCcHHHHHHHHhhCCc
Confidence 35678733 33 344444 4578888999999998875 44555543 22 2445655555543 333444443
No 438
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=20.27 E-value=1.3e+02 Score=21.33 Aligned_cols=36 Identities=17% Similarity=0.340 Sum_probs=21.6
Q ss_pred CCcEEEE-cCChhhHHHHHHHcCCeEEEEccCCCChhh
Q 025117 193 KSQICMV-GDRLDTDILFGQNGGCKTLLVLSGVTSLSM 229 (257)
Q Consensus 193 ~~~~~~I-GD~~~~Di~~A~~aG~~ti~V~~G~~~~~~ 229 (257)
+..++.+ ||+ ..=+..|..+|+..+.++.|....++
T Consensus 40 ~~~lvIt~gdR-~di~~~a~~~~i~~iIltg~~~~~~~ 76 (105)
T PF07085_consen 40 PGDLVITPGDR-EDIQLAAIEAGIACIILTGGLEPSEE 76 (105)
T ss_dssp TTEEEEEETT--HHHHHHHCCTTECEEEEETT----HH
T ss_pred CCeEEEEeCCc-HHHHHHHHHhCCCEEEEeCCCCCCHH
Confidence 3678888 999 33355778888777777766654443
No 439
>KOG4132 consensus Uroporphyrinogen III synthase UROS/HEM4 [Coenzyme transport and metabolism]
Probab=20.22 E-value=4.7e+02 Score=21.98 Aligned_cols=70 Identities=21% Similarity=0.266 Sum_probs=49.2
Q ss_pred cCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceech------HHHHHHHHHhcCCCCCCEEEEEcCHHHHHHHHHcCC
Q 025117 5 KGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFAS------SFAAAAYLKSIDFPKDKKVYVVGEDGILKELELAGF 78 (257)
Q Consensus 5 ~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts------~~~~~~~l~~~~~~~~~~v~vlg~~~~~~~l~~~g~ 78 (257)
+-+|++|..-| ..++-+.++|...||.++.=+|+-+ ..-+.+++++.+.. .-+-+++..+++..++-.|-
T Consensus 132 ~alPLLfpcGn--~~rdil~kkL~~~G~~Vds~~VY~T~~hp~~~~~~~~alk~~~~~--d~ivfFSPsgv~~~lq~f~~ 207 (260)
T KOG4132|consen 132 RALPLLFPCGN--LRRDILPKKLHDKGIRVDSCEVYETREHPDGFKQFIHALKECGFI--DWIVFFSPSGVKSSLQYFGD 207 (260)
T ss_pred ccCceEEEccc--chhHHHHHHHHhCCceeeEEEEEeeeecccHHHHHHHHHHhcCCc--ceEEEECcchHHHHHHHHHH
Confidence 34577777643 5678899999999999887666633 23467788776543 45777888888887776653
No 440
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=20.20 E-value=5.6e+02 Score=22.64 Aligned_cols=70 Identities=26% Similarity=0.306 Sum_probs=43.0
Q ss_pred hhccCCcEEEEeCCCC-c---CHHHHHHHHHhCCCCCCC------CceechHHHHHHHHHhcCCCCCCEEEEEcCHHHHH
Q 025117 2 LRSKGKRLVFVTNNST-K---SRKQYGKKFETLGLTVTE------EEIFASSFAAAAYLKSIDFPKDKKVYVVGEDGILK 71 (257)
Q Consensus 2 L~~~g~~~~~lTN~s~-~---~~~~~~~~L~~~G~~~~~------~~i~ts~~~~~~~l~~~~~~~~~~v~vlg~~~~~~ 71 (257)
+++.|++++++|-... + ..+.+.+.|++.|+.+.. +-=+.....+.+.+++.+. .-|.-+|+....+
T Consensus 21 ~~~~g~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~---D~IIavGGGSviD 97 (357)
T cd08181 21 LAALGKRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNA---DFVIGIGGGSPLD 97 (357)
T ss_pred HHHcCCEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCC---CEEEEeCCchHHH
Confidence 4556899999997544 2 237788889988875321 1112223334455554432 5788889887766
Q ss_pred HHH
Q 025117 72 ELE 74 (257)
Q Consensus 72 ~l~ 74 (257)
..+
T Consensus 98 ~aK 100 (357)
T cd08181 98 AAK 100 (357)
T ss_pred HHH
Confidence 655
No 441
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=20.17 E-value=3.8e+02 Score=21.94 Aligned_cols=34 Identities=12% Similarity=0.375 Sum_probs=26.7
Q ss_pred cCCcEEEEeCCCCcCHHHHHHHHHhCCCCCCCCcee
Q 025117 5 KGKRLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIF 40 (257)
Q Consensus 5 ~g~~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ 40 (257)
.|++++|+..+. .++.+.+.|++.|+.+..-.++
T Consensus 117 ~~~~vL~~rg~~--~r~~l~~~L~~~G~~v~~~~vY 150 (240)
T PRK09189 117 PTARLLYLAGRP--RAPVFEDRLAAAGIPFRVAECY 150 (240)
T ss_pred CCCcEEEeccCc--ccchhHHHHHhCCCeeEEEEEE
Confidence 678899998644 4478999999999998765555
No 442
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.09 E-value=1.5e+02 Score=19.55 Aligned_cols=35 Identities=23% Similarity=0.445 Sum_probs=30.2
Q ss_pred cEEEEeCCCCcCHHHHHHHHHhCCCCCCCCceech
Q 025117 8 RLVFVTNNSTKSRKQYGKKFETLGLTVTEEEIFAS 42 (257)
Q Consensus 8 ~~~~lTN~s~~~~~~~~~~L~~~G~~~~~~~i~ts 42 (257)
.+.+.+.+.+..-..++..|..+|+++-.-+|+|+
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt 37 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFST 37 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEc
Confidence 56778888888889999999999999988899876
Done!