Query 025120
Match_columns 257
No_of_seqs 199 out of 1770
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 02:52:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025120.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025120hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0398 Uncharacterized conser 100.0 1.2E-28 2.6E-33 207.9 22.7 153 31-184 32-185 (223)
2 COG0586 DedA Uncharacterized m 99.9 5.6E-26 1.2E-30 190.5 16.2 138 52-190 20-169 (208)
3 PRK10847 hypothetical protein; 99.9 1.3E-25 2.8E-30 189.9 16.6 152 37-190 18-183 (219)
4 PF09335 SNARE_assoc: SNARE as 99.9 4E-23 8.6E-28 159.0 13.7 120 65-184 1-123 (123)
5 COG1238 Predicted membrane pro 99.7 4.1E-16 8.9E-21 124.5 14.7 149 34-186 6-157 (161)
6 KOG3140 Predicted membrane pro 99.6 1E-14 2.2E-19 125.7 11.0 176 44-219 91-269 (275)
7 PF06695 Sm_multidrug_ex: Puta 97.3 0.0035 7.7E-08 48.0 10.2 97 78-175 14-119 (121)
8 PF12794 MscS_TM: Mechanosensi 89.0 10 0.00022 34.3 12.4 28 160-187 195-223 (340)
9 PF06695 Sm_multidrug_ex: Puta 86.5 12 0.00026 28.4 9.7 46 44-96 71-120 (121)
10 PRK01844 hypothetical protein; 85.5 3.8 8.3E-05 28.2 5.7 32 80-111 3-34 (72)
11 PRK00523 hypothetical protein; 83.0 5.6 0.00012 27.3 5.7 31 81-111 5-35 (72)
12 PRK14397 membrane protein; Pro 80.3 35 0.00076 28.9 10.8 33 86-118 6-39 (222)
13 PRK11677 hypothetical protein; 79.9 4.5 9.7E-05 31.5 5.0 25 84-108 3-27 (134)
14 TIGR00261 traB pheromone shutd 79.0 53 0.0012 30.2 12.6 43 5-48 238-281 (380)
15 COG3763 Uncharacterized protei 75.1 13 0.00029 25.3 5.5 31 80-110 3-33 (71)
16 KOG1109 Vacuole membrane prote 74.7 37 0.0008 31.2 9.8 90 85-174 213-321 (440)
17 TIGR02359 thiW thiW protein. L 71.0 48 0.001 26.6 8.9 32 67-98 34-65 (160)
18 PF07155 ECF-ribofla_trS: ECF- 69.5 7.9 0.00017 30.9 4.2 32 67-98 38-69 (169)
19 PRK11281 hypothetical protein; 68.5 1.7E+02 0.0036 31.1 15.3 28 160-187 683-711 (1113)
20 PF03672 UPF0154: Uncharacteri 68.0 13 0.00028 25.0 4.2 26 86-111 2-27 (64)
21 PRK10847 hypothetical protein; 67.3 23 0.0005 29.8 6.8 66 122-187 17-98 (219)
22 PRK10527 hypothetical protein; 66.0 23 0.00049 27.2 5.8 55 52-131 12-67 (125)
23 PF07857 DUF1632: CEO family ( 65.0 14 0.0003 32.0 5.1 23 165-187 79-101 (254)
24 COG5336 Uncharacterized protei 64.9 34 0.00074 25.6 6.3 38 200-237 75-112 (116)
25 COG0575 CdsA CDP-diglyceride s 64.9 5.3 0.00011 34.7 2.5 31 84-114 136-166 (265)
26 PRK13661 hypothetical protein; 64.4 13 0.00028 30.5 4.5 33 66-98 39-71 (182)
27 PF01148 CTP_transf_1: Cytidyl 62.9 12 0.00026 31.6 4.4 27 82-108 130-156 (259)
28 PF06295 DUF1043: Protein of u 62.6 13 0.00028 28.6 4.0 22 87-108 2-23 (128)
29 COG2426 Predicted membrane pro 62.0 71 0.0015 24.6 9.7 105 78-183 18-137 (142)
30 PRK11624 cdsA CDP-diglyceride 61.2 7.9 0.00017 34.1 2.9 38 84-121 154-191 (285)
31 COG4858 Uncharacterized membra 60.6 41 0.00089 27.8 6.6 53 157-217 158-210 (226)
32 PF09335 SNARE_assoc: SNARE as 58.8 68 0.0015 23.5 7.4 38 65-102 83-121 (123)
33 COG1238 Predicted membrane pro 56.0 43 0.00093 26.9 6.1 66 125-191 12-82 (161)
34 COG0398 Uncharacterized conser 53.4 1.4E+02 0.003 25.2 14.0 81 29-110 33-115 (223)
35 COG0586 DedA Uncharacterized m 52.8 55 0.0012 27.3 6.5 69 31-109 97-168 (208)
36 PRK13461 F0F1 ATP synthase sub 52.6 31 0.00067 27.3 4.8 34 1-34 1-34 (159)
37 COG4956 Integral membrane prot 51.8 1.2E+02 0.0026 27.1 8.5 39 88-133 41-79 (356)
38 PRK09609 hypothetical protein; 50.1 89 0.0019 27.9 7.5 14 90-103 89-102 (312)
39 PF06305 DUF1049: Protein of u 46.4 76 0.0017 20.9 5.3 10 119-128 56-65 (68)
40 PF03773 DUF318: Predicted per 45.2 2.2E+02 0.0047 25.1 10.6 42 133-174 54-95 (307)
41 PRK10929 putative mechanosensi 42.3 4.5E+02 0.0098 28.0 16.3 17 171-187 679-696 (1109)
42 COG3105 Uncharacterized protei 41.4 78 0.0017 24.4 5.1 25 83-107 7-31 (138)
43 PF03613 EIID-AGA: PTS system 39.6 2.6E+02 0.0056 24.4 10.4 94 78-176 133-229 (264)
44 PF07332 DUF1469: Protein of u 38.9 1.3E+02 0.0028 22.3 6.2 27 79-105 70-96 (121)
45 PF12822 DUF3816: Protein of u 38.8 42 0.00092 26.5 3.7 31 67-97 31-61 (172)
46 TIGR03750 conj_TIGR03750 conju 38.5 1.7E+02 0.0037 22.0 9.0 44 87-131 51-94 (111)
47 PRK14402 membrane protein; Pro 38.1 2.3E+02 0.0051 23.5 10.8 60 82-142 4-76 (198)
48 PRK01637 hypothetical protein; 38.1 56 0.0012 28.6 4.6 41 148-188 189-229 (286)
49 COG1177 PotC ABC-type spermidi 37.8 2.2E+02 0.0048 24.8 8.2 103 73-175 64-178 (267)
50 PRK09395 actP acetate permease 37.5 3.8E+02 0.0083 25.8 16.2 27 154-184 176-202 (551)
51 PF11808 DUF3329: Domain of un 37.4 1.2E+02 0.0026 21.6 5.4 21 1-21 1-21 (90)
52 PF09512 ThiW: Thiamine-precur 36.6 79 0.0017 25.1 4.6 17 69-85 33-49 (150)
53 PF04246 RseC_MucC: Positive r 36.5 1.2E+02 0.0025 23.2 5.7 25 84-108 96-120 (135)
54 COG2839 Uncharacterized protei 35.7 2.3E+02 0.0049 22.6 8.0 49 59-107 18-78 (160)
55 PLN02594 phosphatidate cytidyl 35.3 3.5E+02 0.0075 24.6 13.7 36 85-121 128-163 (342)
56 PF11990 DUF3487: Protein of u 35.0 2E+02 0.0044 21.8 8.8 13 119-131 85-97 (121)
57 PLN02953 phosphatidate cytidyl 34.4 30 0.00065 31.9 2.3 31 84-115 271-301 (403)
58 COG4720 Predicted membrane pro 34.0 58 0.0013 26.5 3.6 36 68-103 41-76 (177)
59 PRK10862 SoxR reducing system 33.7 87 0.0019 24.8 4.6 24 85-108 104-127 (154)
60 COG2832 Uncharacterized protei 33.7 1.2E+02 0.0026 23.0 5.0 52 55-131 15-67 (119)
61 PRK14407 membrane protein; Pro 32.2 71 0.0015 27.0 4.0 46 82-127 6-52 (219)
62 COG3086 RseC Positive regulato 31.7 1.6E+02 0.0036 23.2 5.6 24 85-108 104-127 (150)
63 PRK14400 membrane protein; Pro 31.2 90 0.002 26.0 4.5 37 83-119 7-44 (201)
64 PF10337 DUF2422: Protein of u 30.6 4.5E+02 0.0099 24.6 11.8 33 148-180 146-178 (459)
65 PF11364 DUF3165: Protein of u 29.6 2E+02 0.0044 20.2 6.0 13 61-73 48-60 (81)
66 PRK00220 putative glycerol-3-p 27.9 1.3E+02 0.0027 25.0 4.8 57 86-142 8-77 (198)
67 PF12072 DUF3552: Domain of un 27.6 99 0.0021 25.6 4.2 27 84-110 3-29 (201)
68 COG1916 Uncharacterized homolo 27.2 5E+02 0.011 23.9 10.5 31 17-48 259-289 (388)
69 PF01102 Glycophorin_A: Glycop 26.5 93 0.002 23.8 3.5 12 96-107 83-94 (122)
70 PF01102 Glycophorin_A: Glycop 26.4 56 0.0012 25.0 2.2 7 239-245 107-113 (122)
71 PF11189 DUF2973: Protein of u 25.3 1.4E+02 0.0031 20.0 3.8 21 236-256 40-60 (65)
72 TIGR03321 alt_F1F0_F0_B altern 24.3 1.4E+02 0.0031 25.4 4.7 34 1-34 1-34 (246)
73 PF05977 MFS_3: Transmembrane 24.0 6.5E+02 0.014 24.1 14.1 18 233-250 414-431 (524)
74 PF14163 SieB: Superinfection 23.9 3.1E+02 0.0068 21.3 6.3 11 78-88 32-42 (151)
75 PRK14419 membrane protein; Pro 23.8 1.8E+02 0.0039 24.1 5.0 42 84-125 5-47 (199)
76 TIGR00023 acyl-phosphate glyce 23.8 1.4E+02 0.0029 24.8 4.2 57 85-141 7-76 (196)
77 PRK14418 membrane protein; Pro 23.7 1.4E+02 0.003 25.6 4.4 40 79-118 6-46 (236)
78 PF06570 DUF1129: Protein of u 23.7 2.2E+02 0.0048 23.5 5.6 53 157-217 143-195 (206)
79 PF06897 DUF1269: Protein of u 23.3 3.1E+02 0.0066 20.1 6.0 16 118-133 66-81 (102)
80 PRK14474 F0F1 ATP synthase sub 23.2 1.6E+02 0.0035 25.3 4.7 34 1-34 1-34 (250)
81 PRK12821 aspartyl/glutamyl-tRN 23.0 1.2E+02 0.0027 28.5 4.2 26 69-94 100-125 (477)
82 PF13314 DUF4083: Domain of un 22.8 2.2E+02 0.0048 18.7 4.1 12 118-129 46-57 (58)
83 PRK14413 membrane protein; Pro 22.5 1.3E+02 0.0029 24.9 3.9 40 86-125 6-46 (197)
84 PRK14417 membrane protein; Pro 22.3 1.5E+02 0.0033 25.3 4.3 59 84-142 6-77 (232)
85 PF05992 SbmA_BacA: SbmA/BacA- 21.9 5.9E+02 0.013 22.9 9.5 22 86-107 65-86 (315)
86 PF06084 Cytomega_TRL10: Cytom 21.6 91 0.002 23.5 2.5 19 239-257 129-147 (150)
87 PF11139 DUF2910: Protein of u 21.5 4.6E+02 0.01 21.5 12.8 19 118-136 180-198 (214)
88 PRK14399 membrane protein; Pro 21.5 1.5E+02 0.0033 25.7 4.2 36 83-118 11-47 (258)
89 PRK14410 membrane protein; Pro 21.4 1.5E+02 0.0032 25.4 4.1 41 86-126 7-48 (235)
90 COG3275 LytS Putative regulato 21.3 4.7E+02 0.01 25.1 7.5 17 235-251 295-311 (557)
91 PRK03072 heat shock protein Ht 20.7 3.1E+02 0.0067 24.0 6.1 31 74-105 24-54 (288)
92 PRK14409 membrane protein; Pro 20.3 1.5E+02 0.0034 24.7 3.9 57 85-141 4-73 (205)
93 PF10031 DUF2273: Small integr 20.3 2.4E+02 0.0053 17.9 5.0 24 77-105 26-49 (51)
94 COG2981 CysZ Uncharacterized p 20.2 5.6E+02 0.012 22.0 11.5 14 132-145 146-159 (250)
No 1
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=1.2e-28 Score=207.93 Aligned_cols=153 Identities=34% Similarity=0.700 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHhcCCChHHHH-HHHHHHhhhcccCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhChHH
Q 025120 31 EKILKDFLTWVDQDLGPWGPLV-LAVAYIPLTILAVPASVLTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPF 109 (257)
Q Consensus 31 ~~~l~~l~~~~~~~~g~~~~~~-~~~~~~~~~~~~iP~~~~~~~~G~~~g~~~~~~~~~~g~~lG~~~~y~igR~~g~~~ 109 (257)
.+..+++.+|++ +++.++++. |++.++...++++|++++.+++|.+||+++|++++++|+++|+.++|+++|++|+++
T Consensus 32 ~~~~~~l~~~i~-~~g~~~pl~~fil~~l~~~~~~iP~~il~l~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~gr~~ 110 (223)
T COG0398 32 LLDPETLREWIQ-AYGALGPLVFFILLYLVATLPIIPGSILTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLGRDW 110 (223)
T ss_pred ccCHHHHHHHHH-HcCchHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 445688999999 789999998 555555666667999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCchHHHHHHHHHHhcCchhhhHHhhcCCCchhHhhHhhhcccCChhhHHHHHHHhHHHHHHHHHHHHhh
Q 025120 110 VISKLKDYPQFRSVALAIQRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTT 184 (257)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~~r~~P~~p~~~~~~~aG~~~~~~~~f~~~~~lg~~p~~~~~~~~G~~ 184 (257)
.+++..++++.++.++.++|+|++.+++.|++|++|++++||++|++++++++|.+++.+|++|+++.|+++|+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~g~~~i~~lrl~P~~P~~lvn~aaglt~is~~~f~ias~lG~~P~~i~y~~~G~~ 185 (223)
T COG0398 111 VLKFVGGKEKVQRIDAGLERNGFWAILLLRLIPIFPFDLVNYAAGLTGISFRDFAIATLLGKLPGTIVYTYLGSA 185 (223)
T ss_pred HHHHhcccHHHHHHHHHHHhCChHHHHHHHHhhcCCHHHHHHHHhccCCcHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 999888888999999999999999999999999999999999999999999999999999999999999999963
No 2
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=99.94 E-value=5.6e-26 Score=190.48 Aligned_cols=138 Identities=21% Similarity=0.410 Sum_probs=124.8
Q ss_pred HHHHHHHhh---hcccCchHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhhc----CchH
Q 025120 52 VLAVAYIPL---TILAVPASVLTLGGGYL-----FGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLK----DYPQ 119 (257)
Q Consensus 52 ~~~~~~~~~---~~~~iP~~~~~~~~G~~-----~g~~~~~~~~~~g~~lG~~~~y~igR~~g~~~~~~~~~----~~~~ 119 (257)
+|...+.+. ...|+|++++++.+|++ ++++..++++++|+++||.++|++||++|++..+++.+ ++++
T Consensus 20 ~f~~~f~e~~l~~~~~lPge~iL~~~G~l~~~g~~~~~~~i~~~~lga~lGd~i~Y~iGr~~G~~~l~~~~~~~~~~~~~ 99 (208)
T COG0586 20 VFLILFLESGLLVGPPLPGEVLLLLAGALAAQGKLNLWLVILVATLGALLGDLISYWIGRRFGRKLLRKLWSYRLLKRKK 99 (208)
T ss_pred HHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhhhhhccCCHHH
Confidence 444445444 56679999999999998 56889999999999999999999999999998887665 4678
Q ss_pred HHHHHHHHHhcCchhhhHHhhcCCCchhHhhHhhhcccCChhhHHHHHHHhHHHHHHHHHHHHhhhccchh
Q 025120 120 FRSVALAIQRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLKDLSD 190 (257)
Q Consensus 120 ~~~~~~~~~~~g~~~v~~~r~~P~~p~~~~~~~aG~~~~~~~~f~~~~~lg~~p~~~~~~~~G~~l~~~~~ 190 (257)
++|.+++++|||.++++++||+|++| +++++.||+++||+++|...|++|+++|+.++++.|+.+++..+
T Consensus 100 l~~a~~~f~r~G~~~vf~~RFip~vR-t~ip~~AG~~~m~~~~F~~~n~~ga~iW~~~~~~lGy~~G~~~~ 169 (208)
T COG0586 100 LDKAELLFERHGLFAIFLGRFIPGVR-TLVPIVAGMSKMPLRRFLLYNILGALLWALVLTLLGYLLGEVID 169 (208)
T ss_pred HHHHHHHHHHcCchhhhhhcccchhH-hhhhHhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 99999999999999999999999999 99999999999999999999999999999999999999987655
No 3
>PRK10847 hypothetical protein; Provisional
Probab=99.94 E-value=1.3e-25 Score=189.85 Aligned_cols=152 Identities=16% Similarity=0.285 Sum_probs=127.0
Q ss_pred HHHHHHhcCCChHHH-HHHHHHHhh---hcccCchHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025120 37 FLTWVDQDLGPWGPL-VLAVAYIPL---TILAVPASVLTLGGGYLF-------GLPVGFVADSIGATIGAGAAFLLGRTI 105 (257)
Q Consensus 37 l~~~~~~~~g~~~~~-~~~~~~~~~---~~~~iP~~~~~~~~G~~~-------g~~~~~~~~~~g~~lG~~~~y~igR~~ 105 (257)
+.++++ +++++++. +++..+.+. ...++|++++.+++|.+. +++..++++++|+++|+.++|++||+.
T Consensus 18 ~~~~~~-~~g~~~y~~lfl~~~le~~~~~~~~lPge~~l~~~G~la~~~~~~~~~~~~~~~a~~Ga~lG~~i~Y~lGr~~ 96 (219)
T PRK10847 18 LAELVA-QYGVWVYAILFLILFCETGLVVTPFLPGDSLLFVAGALASLPTNDLNVHMMVALMLIAAIVGDAVNYTIGRLF 96 (219)
T ss_pred HHHHHH-HhhHHHHHHHHHHHHHHhccccCCCCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345565 78888765 444444443 234589999888888774 366789999999999999999999999
Q ss_pred ChHHHHHh---hcCchHHHHHHHHHHhcCchhhhHHhhcCCCchhHhhHhhhcccCChhhHHHHHHHhHHHHHHHHHHHH
Q 025120 106 GKPFVISK---LKDYPQFRSVALAIQRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVG 182 (257)
Q Consensus 106 g~~~~~~~---~~~~~~~~~~~~~~~~~g~~~v~~~r~~P~~p~~~~~~~aG~~~~~~~~f~~~~~lg~~p~~~~~~~~G 182 (257)
|++...++ ..++++++|.+++++|||.+.++++||+|++| +++|+.+|+++||+++|+..|.+|+++|+..++++|
T Consensus 97 G~~~l~~~~~~~~~~~~l~~~~~~~~r~G~~~v~i~RfiP~~R-~~~~~~aG~~~m~~~~F~~~~~lg~~~W~~~~~~~G 175 (219)
T PRK10847 97 GEKLFSNPNSKIFRRSYLDKTHQFYEKHGGKTIILARFVPIVR-TFAPFVAGMGHMSYRHFAAYNVIGALLWVLLFTYAG 175 (219)
T ss_pred CHHHhhccccccCCHHHHHHHHHHHHHcCCEEEEeeCCccchH-hHHHHHhHhcCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99887532 22346789999999999999999999999999 899999999999999999999999999999999999
Q ss_pred hhhccchh
Q 025120 183 TTLKDLSD 190 (257)
Q Consensus 183 ~~l~~~~~ 190 (257)
+.+++...
T Consensus 176 y~~g~~~~ 183 (219)
T PRK10847 176 YFFGTLPF 183 (219)
T ss_pred HHHcCCHH
Confidence 99987643
No 4
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=99.90 E-value=4e-23 Score=159.04 Aligned_cols=120 Identities=36% Similarity=0.686 Sum_probs=110.8
Q ss_pred CchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhhcCchHHHH---HHHHHHhcCchhhhHHhhc
Q 025120 65 VPASVLTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRS---VALAIQRSGFKIVLLLRLV 141 (257)
Q Consensus 65 iP~~~~~~~~G~~~g~~~~~~~~~~g~~lG~~~~y~igR~~g~~~~~~~~~~~~~~~~---~~~~~~~~g~~~v~~~r~~ 141 (257)
+|++++++++|+++|++.+++++++|+++|+.++|++||+++++...++..++++.++ .++.++|||.+.++++|++
T Consensus 1 iP~~~~~~~~g~~~g~~~~~~~~~~g~~~g~~~~y~lgr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~ 80 (123)
T PF09335_consen 1 IPGSILLIAAGALFGPWLGFLIATLGAVLGSLLAYLLGRYFGRRRLRRKLRKKKRIKRIERIERWFQKYGFWVLFLSRFI 80 (123)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999997666666655555555 8899999999999999999
Q ss_pred CCCchhHhhHhhhcccCChhhHHHHHHHhHHHHHHHHHHHHhh
Q 025120 142 PLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTT 184 (257)
Q Consensus 142 P~~p~~~~~~~aG~~~~~~~~f~~~~~lg~~p~~~~~~~~G~~ 184 (257)
|++|++++|+++|++++|+++|+.++++|.+||+.+++++|+.
T Consensus 81 P~~P~~~~~~~ag~~~~~~~~f~~~~~~g~~~~~~~~~~~G~~ 123 (123)
T PF09335_consen 81 PGLPFDVVNYLAGITRMPFRRFFLASLIGKLPWTILYVLLGYL 123 (123)
T ss_pred HHccHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999973
No 5
>COG1238 Predicted membrane protein [Function unknown]
Probab=99.71 E-value=4.1e-16 Score=124.46 Aligned_cols=149 Identities=20% Similarity=0.242 Sum_probs=123.6
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHhhhcccCchHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH
Q 025120 34 LKDFLTWVDQDLGPWGPLVLAVAYIPLTILAVPASVLTLGGGYL-FGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVIS 112 (257)
Q Consensus 34 l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~iP~~~~~~~~G~~-~g~~~~~~~~~~g~~lG~~~~y~igR~~g~~~~~~ 112 (257)
.++..++..+.+++++ +|+..++..+++|+|+|++....-.. .+++...+++++|+++|+.++|++||..++...++
T Consensus 6 ~~~~~~~~~~~~a~~~--Lf~vaF~eat~lP~~sE~~l~~m~~~~~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~~ 83 (161)
T COG1238 6 YDWTLSLMSQAYAYAG--LFIVAFLEATLLPVPSEVLLAPMLLLGLNAWILALVATLGSVLGGLVNYALGRFLPEFIARR 83 (161)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHhcCCChHHHHHHHHHcCCchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHHH
Confidence 3444555555555544 77888899999999999765544433 78999999999999999999999999998877775
Q ss_pred hhc-CchHHHHHHH-HHHhcCchhhhHHhhcCCCchhHhhHhhhcccCChhhHHHHHHHhHHHHHHHHHHHHhhhc
Q 025120 113 KLK-DYPQFRSVAL-AIQRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLK 186 (257)
Q Consensus 113 ~~~-~~~~~~~~~~-~~~~~g~~~v~~~r~~P~~p~~~~~~~aG~~~~~~~~f~~~~~lg~~p~~~~~~~~G~~l~ 186 (257)
+.. ++++.++.++ ..+|+|.+.++++-+.| +| ++++.++|..++|+++|+...++|+.++-.+.+++....+
T Consensus 84 ~~~~~~~~~~~~~~~~~~ryg~~~ll~s~lp~-ig-d~~t~~aG~~~~~~~~f~~~~~igk~~Ry~~la~~~~~~~ 157 (161)
T COG1238 84 WFPGSEEALEKLQEKWYRRYGVWTLLLSWLPP-IG-DVLTLLAGWLRLNFLPFILLVFLGKAARYLLLAALTLLGG 157 (161)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHhccc-cc-hHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 443 3566777776 78999999999999977 89 9999999999999999999999999999999988877654
No 6
>KOG3140 consensus Predicted membrane protein [Function unknown]
Probab=99.59 E-value=1e-14 Score=125.67 Aligned_cols=176 Identities=27% Similarity=0.447 Sum_probs=139.3
Q ss_pred cCCChHHHHHHHHHHhhhcccCchH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhhcCchHHHH
Q 025120 44 DLGPWGPLVLAVAYIPLTILAVPAS-VLTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRS 122 (257)
Q Consensus 44 ~~g~~~~~~~~~~~~~~~~~~iP~~-~~~~~~G~~~g~~~~~~~~~~g~~lG~~~~y~igR~~g~~~~~~~~~~~~~~~~ 122 (257)
.+.....+.|+..+.....+++|+. ...+.+|.++|.+.|.+.++..+.+|++.||.+++.+||+++.+++..+.++-+
T Consensus 91 ~~~a~~~~~~~~~y~f~qtfaipG~~fls~~aG~l~~~~~g~~Lv~~~~~~ga~~cy~lS~~f~r~~v~~l~p~~~~~~~ 170 (275)
T KOG3140|consen 91 TYFAAVLLGFIAAYVFLQTFAIPGSIFLSLLAGALFGVFKGVLLVCLLSTLGASLCYLLSKLFGRPLVLKLFPDKIAFLQ 170 (275)
T ss_pred hhHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHhhccceEEeeeeeccchhHHHHHHHHHHHhHHHHHHHhHHHHHHHH
Confidence 4444456778888889999999976 688999999999999999999999999999999999999999988765333333
Q ss_pred HHHHHHhcC-chhhhHHhhcCCCchhHhhHhhhcccCChhhHHHHHHHhHHHHHHHHHHHHhhhccchhhcccccccchh
Q 025120 123 VALAIQRSG-FKIVLLLRLVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLKDLSDVTHGWNEFSKT 201 (257)
Q Consensus 123 ~~~~~~~~g-~~~v~~~r~~P~~p~~~~~~~aG~~~~~~~~f~~~~~lg~~p~~~~~~~~G~~l~~~~~~~~~~~~~~~~ 201 (257)
.+...+|++ +..+.+.|.+|..|+.+.|+++++.++|.+.|++++++|.+|.++++.-.|..++++.+..+.....+..
T Consensus 171 ~~~~~~~~~~~~~~~~lrlsp~~pnw~~n~~spvl~Vp~~~f~~~~~~gl~p~s~i~v~ags~l~~l~s~~~~~~~~~~~ 250 (275)
T KOG3140|consen 171 QDVELNRNSLLNYMLFLRLSPFLPNWVINIVSPVLGVPLRIFFIGTFKGLIPYSFIEVRAGSTLASLTSASDAFSWSSIL 250 (275)
T ss_pred HHHHhcccchhhhhhhhhhccCCHHHHHHHHHHhhccchHHHHHHHHHhcCchHHHHhhccchHhhhcccccccCCcchH
Confidence 333344555 5668999999999999999999999999999999999999999999999999998877765555433322
Q ss_pred -HHHHHHHHHHHHHHHhcc
Q 025120 202 -RWAFLIFGLVVSALAENE 219 (257)
Q Consensus 202 -~~~~~~v~~~~~~l~~~~ 219 (257)
.....++.+.-..+++|+
T Consensus 251 ~l~~~~~~~l~~~~l~kk~ 269 (275)
T KOG3140|consen 251 TLLELALLSLLPTLLKKKR 269 (275)
T ss_pred HHHHHHHHHHhHHHHhhhh
Confidence 223334444444555543
No 7
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=97.32 E-value=0.0035 Score=48.00 Aligned_cols=97 Identities=16% Similarity=0.120 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-----HHHhhcC-chHHHHHHHHHHhcCchhhhHHhhcCCCc---hhH
Q 025120 78 FGLPVGFVADSIGATIGAGAAFLLGRTIGKPF-----VISKLKD-YPQFRSVALAIQRSGFKIVLLLRLVPLLP---FNM 148 (257)
Q Consensus 78 ~g~~~~~~~~~~g~~lG~~~~y~igR~~g~~~-----~~~~~~~-~~~~~~~~~~~~~~g~~~v~~~r~~P~~p---~~~ 148 (257)
++++..++++.+|+.+.....++.-++.-+.. .++...+ .++.++-++.+||||++.+.+.-.+| +| -..
T Consensus 14 l~p~~~~~~~~lGN~l~vp~i~~~~~~i~~~l~~~~~~~~~~~~~~~k~~~~~~~i~kyg~~GL~lFVaIP-lP~TG~wt 92 (121)
T PF06695_consen 14 LPPWEAFLLAFLGNILPVPFILLFLDKILKWLKRKPWLKKFYEWLEKKAEKKSKKIEKYGFWGLALFVAIP-LPGTGAWT 92 (121)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCC-CCcchHHH
Confidence 67889999999999998888777776653322 1211111 23455677789999998888777776 55 567
Q ss_pred hhHhhhcccCChhhHHHHHHHhHHHHH
Q 025120 149 LNYLLSVTPVPLLEYMLASWIGMMPIT 175 (257)
Q Consensus 149 ~~~~aG~~~~~~~~f~~~~~lg~~p~~ 175 (257)
-+.++-+.+++.++=+.+..+|.+...
T Consensus 93 gal~a~llg~~~~~~~~ai~~Gv~ia~ 119 (121)
T PF06695_consen 93 GALIASLLGMDKKKAFLAIFLGVLIAG 119 (121)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 778888999999999999999976654
No 8
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=88.98 E-value=10 Score=34.25 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=15.0
Q ss_pred hhhHHHHHHHhHHHH-HHHHHHHHhhhcc
Q 025120 160 LLEYMLASWIGMMPI-TLALVYVGTTLKD 187 (257)
Q Consensus 160 ~~~f~~~~~lg~~p~-~~~~~~~G~~l~~ 187 (257)
..++++...+-..|- ..+.+..||....
T Consensus 195 ~~~~l~~~~li~~Pl~li~la~~GY~yTA 223 (340)
T PF12794_consen 195 RLRYLWWPLLILAPLALIVLALLGYYYTA 223 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 444455555444554 4445677776643
No 9
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=86.47 E-value=12 Score=28.43 Aligned_cols=46 Identities=22% Similarity=0.327 Sum_probs=28.2
Q ss_pred cCCChHHHHHHHHHHhhhcccCchH--HHHHHHHHhhh--HHHHHHHHHHHHHHHHH
Q 025120 44 DLGPWGPLVLAVAYIPLTILAVPAS--VLTLGGGYLFG--LPVGFVADSIGATIGAG 96 (257)
Q Consensus 44 ~~g~~~~~~~~~~~~~~~~~~iP~~--~~~~~~G~~~g--~~~~~~~~~~g~~lG~~ 96 (257)
.++.+|..+|+ ..|+|++ ....+.+.++| ....+....+|..+++.
T Consensus 71 kyg~~GL~lFV-------aIPlP~TG~wtgal~a~llg~~~~~~~~ai~~Gv~ia~~ 120 (121)
T PF06695_consen 71 KYGFWGLALFV-------AIPLPGTGAWTGALIASLLGMDKKKAFLAIFLGVLIAGV 120 (121)
T ss_pred HHhHHHHHHHH-------hCCCCcchHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 45655544433 3466754 44455566654 77788888888877764
No 10
>PRK01844 hypothetical protein; Provisional
Probab=85.51 E-value=3.8 Score=28.15 Aligned_cols=32 Identities=13% Similarity=0.334 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH
Q 025120 80 LPVGFVADSIGATIGAGAAFLLGRTIGKPFVI 111 (257)
Q Consensus 80 ~~~~~~~~~~g~~lG~~~~y~igR~~g~~~~~ 111 (257)
.|..+++..++..+|...+|+++|+.-++.+.
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark~~~k~lk 34 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARKYMMNYLQ 34 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556677788999999999999998655444
No 11
>PRK00523 hypothetical protein; Provisional
Probab=82.99 E-value=5.6 Score=27.33 Aligned_cols=31 Identities=6% Similarity=0.037 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHH
Q 025120 81 PVGFVADSIGATIGAGAAFLLGRTIGKPFVI 111 (257)
Q Consensus 81 ~~~~~~~~~g~~lG~~~~y~igR~~g~~~~~ 111 (257)
+..+++..++..+|...+|+++|+.-++.+.
T Consensus 5 ~l~I~l~i~~li~G~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777889999999999998665444
No 12
>PRK14397 membrane protein; Provisional
Probab=80.27 E-value=35 Score=28.92 Aligned_cols=33 Identities=9% Similarity=-0.118 Sum_probs=21.9
Q ss_pred HHHHHHHHHHH-HHHHHHHHhChHHHHHhhcCch
Q 025120 86 ADSIGATIGAG-AAFLLGRTIGKPFVISKLKDYP 118 (257)
Q Consensus 86 ~~~~g~~lG~~-~~y~igR~~g~~~~~~~~~~~~ 118 (257)
+..++..+|+. .+|+++|.+....+++.-++|.
T Consensus 6 ~~~~~YLlGSip~~~~i~k~~~g~DiR~~GSgN~ 39 (222)
T PRK14397 6 WIATAYVMGSIPFGLVFARTFCGIDPRTGGSRNV 39 (222)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCccccCCCCc
Confidence 34567788886 7999999875544554444443
No 13
>PRK11677 hypothetical protein; Provisional
Probab=79.87 E-value=4.5 Score=31.49 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhChH
Q 025120 84 FVADSIGATIGAGAAFLLGRTIGKP 108 (257)
Q Consensus 84 ~~~~~~g~~lG~~~~y~igR~~g~~ 108 (257)
.+++.+|.++|.+++|+++|...+.
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccch
Confidence 3566788899999999999976543
No 14
>TIGR00261 traB pheromone shutdown-related protein TraB. traB is a plasmid encoded gene that functions in the shutdown of the peptide sex pheromone cPD1 which is produced by the plasmid free recipient cell prior to conjugative transfer in Enterococcus faecalis. Once the recipient acquires the plasmid, production of cPD1 is shut down. The gene product may play another role in the other species in the family.
Probab=78.99 E-value=53 Score=30.22 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-cchHHHHHHHHHHHHhcCCCh
Q 025120 5 WGSALRITLLILLVAAVVTACFT-LPVEKILKDFLTWVDQDLGPW 48 (257)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~~~~~~g~~ 48 (257)
|.++...++.++++..++...++ .+.+...+.+..|+- -.|..
T Consensus 238 ~~k~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~W~l-~ng~l 281 (380)
T TIGR00261 238 FSKVLSYLIAISIILLFVMISFYLNGFEFLYKNLKLWIL-SNGIL 281 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH-HHhHH
Confidence 44677777777776666634434 455666777888877 34443
No 15
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.11 E-value=13 Score=25.34 Aligned_cols=31 Identities=16% Similarity=0.147 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhChHHH
Q 025120 80 LPVGFVADSIGATIGAGAAFLLGRTIGKPFV 110 (257)
Q Consensus 80 ~~~~~~~~~~g~~lG~~~~y~igR~~g~~~~ 110 (257)
.|.+.+...++-.+|-..+|+++|+.-.+.+
T Consensus 3 l~lail~ivl~ll~G~~~G~fiark~~~k~l 33 (71)
T COG3763 3 LWLAILLIVLALLAGLIGGFFIARKQMKKQL 33 (71)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777778888888999998754433
No 16
>KOG1109 consensus Vacuole membrane protein VMP1 [General function prediction only]
Probab=74.73 E-value=37 Score=31.17 Aligned_cols=90 Identities=19% Similarity=0.258 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh---Ch----HHHHHhh---c-----CchHHHHHH----HHHHhcCchhhhHHhhcCCCc
Q 025120 85 VADSIGATIGAGAAFLLGRTI---GK----PFVISKL---K-----DYPQFRSVA----LAIQRSGFKIVLLLRLVPLLP 145 (257)
Q Consensus 85 ~~~~~g~~lG~~~~y~igR~~---g~----~~~~~~~---~-----~~~~~~~~~----~~~~~~g~~~v~~~r~~P~~p 145 (257)
+.--.|.++|..-.|+..|.. |. +....+. . .-.+.++.. +..+|-|+..+.+.--+|---
T Consensus 213 ilwg~gtalgElppyFmaraarlsg~~p~dee~~ef~~g~~~d~e~~~~r~~r~k~wv~~~v~~lgffgIli~aSIpnPl 292 (440)
T KOG1109|consen 213 ILWGAGTALGELPPYFMARAARLSGVEPDDEEYTEFEEGLNWDAEIALSRVHRAKSWVENQVQRLGFFGILICASIPNPL 292 (440)
T ss_pred hhhccccccccCchHHHHHHHHhcCCCCcHHHhhhhhhhhhhhHHHHhhHHHHhHHHHHHHhhhcccceeEEEecCCCcc
Confidence 344568899999999999975 11 0111000 0 011333333 345556788887777777444
Q ss_pred hhHhhHhhhcccCChhhHHHHHHHhHHHH
Q 025120 146 FNMLNYLLSVTPVPLLEYMLASWIGMMPI 174 (257)
Q Consensus 146 ~~~~~~~aG~~~~~~~~f~~~~~lg~~p~ 174 (257)
+++....+|...+|++.|+.+|++|...-
T Consensus 293 fdlaGitcghflvpfw~ffGaTLigKaii 321 (440)
T KOG1109|consen 293 FDLAGITCGHFLVPFWTFFGATLIGKAII 321 (440)
T ss_pred hhhcccccccccchHHHHhhHHHHHHHHH
Confidence 59999999999999999999999997653
No 17
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=70.96 E-value=48 Score=26.58 Aligned_cols=32 Identities=13% Similarity=0.080 Sum_probs=27.8
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 025120 67 ASVLTLGGGYLFGLPVGFVADSIGATIGAGAA 98 (257)
Q Consensus 67 ~~~~~~~~G~~~g~~~~~~~~~~g~~lG~~~~ 98 (257)
+++..+.+|.++||++|..++.+++.+++...
T Consensus 34 ~~i~~vlaavllGP~~g~~~a~i~~ll~~l~~ 65 (160)
T TIGR02359 34 QHFVNVIAGVLLGPWYALAVAFIIGLLRNTLG 65 (160)
T ss_pred hHHHHHHHHHHHchHHHHHHHHHHHHHHHHhC
Confidence 45788889999999999999999998888764
No 18
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=69.49 E-value=7.9 Score=30.88 Aligned_cols=32 Identities=25% Similarity=0.398 Sum_probs=27.7
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 025120 67 ASVLTLGGGYLFGLPVGFVADSIGATIGAGAA 98 (257)
Q Consensus 67 ~~~~~~~~G~~~g~~~~~~~~~~g~~lG~~~~ 98 (257)
++.....+|.++|+..|+++..+|..+++.+.
T Consensus 38 ~~~~i~l~~~l~Gp~~G~ivg~ig~~l~dll~ 69 (169)
T PF07155_consen 38 GSIPIILAGLLFGPKYGAIVGAIGDLLSDLLS 69 (169)
T ss_pred hhHHHHHHHHHHChHHHHHHHHHHHHHHHHhC
Confidence 45677888999999999999999999999853
No 19
>PRK11281 hypothetical protein; Provisional
Probab=68.50 E-value=1.7e+02 Score=31.11 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=17.5
Q ss_pred hhhHHHHHHHhHHHHHHH-HHHHHhhhcc
Q 025120 160 LLEYMLASWIGMMPITLA-LVYVGTTLKD 187 (257)
Q Consensus 160 ~~~f~~~~~lg~~p~~~~-~~~~G~~l~~ 187 (257)
..++++.+++..+|-.+. .+..||..+.
T Consensus 683 ~~~~~~~~~l~~~P~~l~~l~~~GY~yTa 711 (1113)
T PRK11281 683 TLRLVVRTVLTIAPIALIVLVVLGYYYTA 711 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666676555 6778888765
No 20
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=67.96 E-value=13 Score=24.99 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhChHHHH
Q 025120 86 ADSIGATIGAGAAFLLGRTIGKPFVI 111 (257)
Q Consensus 86 ~~~~g~~lG~~~~y~igR~~g~~~~~ 111 (257)
+..++.++|..++|+++|+.-++.+.
T Consensus 2 ~iilali~G~~~Gff~ar~~~~k~l~ 27 (64)
T PF03672_consen 2 LIILALIVGAVIGFFIARKYMEKQLK 27 (64)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778889999999998665443
No 21
>PRK10847 hypothetical protein; Provisional
Probab=67.34 E-value=23 Score=29.77 Aligned_cols=66 Identities=14% Similarity=0.212 Sum_probs=46.6
Q ss_pred HHHHHHHhcCchh---hhHHhh-------cCCCchhHhhHhhhcc------cCChhhHHHHHHHhHHHHHHHHHHHHhhh
Q 025120 122 SVALAIQRSGFKI---VLLLRL-------VPLLPFNMLNYLLSVT------PVPLLEYMLASWIGMMPITLALVYVGTTL 185 (257)
Q Consensus 122 ~~~~~~~~~g~~~---v~~~r~-------~P~~p~~~~~~~aG~~------~~~~~~f~~~~~lg~~p~~~~~~~~G~~l 185 (257)
.+++.++++|.+. +++.-+ .|++|.+.+-.++|.. .+++..-+..+.+|+.....+..++|+.+
T Consensus 17 ~~~~~~~~~g~~~y~~lfl~~~le~~~~~~~~lPge~~l~~~G~la~~~~~~~~~~~~~~~a~~Ga~lG~~i~Y~lGr~~ 96 (219)
T PRK10847 17 HLAELVAQYGVWVYAILFLILFCETGLVVTPFLPGDSLLFVAGALASLPTNDLNVHMMVALMLIAAIVGDAVNYTIGRLF 96 (219)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhccccCCCCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677777543 333322 4668988887777743 26677778888899999999999999987
Q ss_pred cc
Q 025120 186 KD 187 (257)
Q Consensus 186 ~~ 187 (257)
++
T Consensus 97 G~ 98 (219)
T PRK10847 97 GE 98 (219)
T ss_pred CH
Confidence 53
No 22
>PRK10527 hypothetical protein; Provisional
Probab=65.97 E-value=23 Score=27.24 Aligned_cols=55 Identities=20% Similarity=0.154 Sum_probs=35.6
Q ss_pred HHHHHHHhhhccc-CchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhhcCchHHHHHHHHHHhc
Q 025120 52 VLAVAYIPLTILA-VPASVLTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRS 130 (257)
Q Consensus 52 ~~~~~~~~~~~~~-iP~~~~~~~~G~~~g~~~~~~~~~~g~~lG~~~~y~igR~~g~~~~~~~~~~~~~~~~~~~~~~~~ 130 (257)
+++.+.+...++| +|.+++.+++.+.| +| +.+..++++.+++.+...-+..+++
T Consensus 12 ~~~~LG~iGi~LPlLPTTPFlLLAa~cf-----------------------aR--sSpR~~~WL~~h~~fGp~i~~w~~~ 66 (125)
T PRK10527 12 LAVVLGTLGVVLPLLPTTPFILLAAWCF-----------------------AR--SSPRFHAWLLYRSWFGSYLRHWQQH 66 (125)
T ss_pred HHHHHHHHHHhccCCCCcHHHHHHHHHH-----------------------Hc--CCHHHHHHHHcCchhhHHHHHHHHC
Confidence 3444555666777 79998888765443 44 4566777777777776666666555
Q ss_pred C
Q 025120 131 G 131 (257)
Q Consensus 131 g 131 (257)
+
T Consensus 67 r 67 (125)
T PRK10527 67 R 67 (125)
T ss_pred C
Confidence 4
No 23
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=65.01 E-value=14 Score=31.99 Aligned_cols=23 Identities=13% Similarity=0.052 Sum_probs=17.0
Q ss_pred HHHHHhHHHHHHHHHHHHhhhcc
Q 025120 165 LASWIGMMPITLALVYVGTTLKD 187 (257)
Q Consensus 165 ~~~~lg~~p~~~~~~~~G~~l~~ 187 (257)
++-.+|...|...-...|...+.
T Consensus 79 iGLglg~liW~s~n~l~Gw~~gr 101 (254)
T PF07857_consen 79 IGLGLGMLIWGSVNCLTGWASGR 101 (254)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhh
Confidence 34557888898888888887654
No 24
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.90 E-value=34 Score=25.56 Aligned_cols=38 Identities=13% Similarity=0.146 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHHhccccccccCCCCCCCCCCCC
Q 025120 200 KTRWAFLIFGLVVSALAENEDIDAILGSPELPIMAEQP 237 (257)
Q Consensus 200 ~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 237 (257)
++.++++++|+...++.-.+.........+.++.+.++
T Consensus 75 wglIv~lllGf~AG~lnv~Rsag~va~~~~~~~~s~~~ 112 (116)
T COG5336 75 WGLIVFLLLGFGAGVLNVLRSAGKVAEQGQAPKSSGND 112 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccCCCCCccc
Confidence 45556666676665444433333333344444444433
No 25
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=64.90 E-value=5.3 Score=34.72 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHhh
Q 025120 84 FVADSIGATIGAGAAFLLGRTIGKPFVISKL 114 (257)
Q Consensus 84 ~~~~~~g~~lG~~~~y~igR~~g~~~~~~~~ 114 (257)
.+...++...+|+.+|+.||++|++......
T Consensus 136 ~l~l~~~vw~~Di~Ayf~Gr~fGk~kl~p~i 166 (265)
T COG0575 136 LLLLFLGVWAGDIGAYFVGRRFGKHKLAPKI 166 (265)
T ss_pred HHHHHHHHHHHhhhHHHHHHHcCCCCCCCcC
Confidence 5556778999999999999999998644433
No 26
>PRK13661 hypothetical protein; Provisional
Probab=64.38 E-value=13 Score=30.48 Aligned_cols=33 Identities=30% Similarity=0.259 Sum_probs=27.9
Q ss_pred chHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 025120 66 PASVLTLGGGYLFGLPVGFVADSIGATIGAGAA 98 (257)
Q Consensus 66 P~~~~~~~~G~~~g~~~~~~~~~~g~~lG~~~~ 98 (257)
|++......|.+||+..|+++..+|..+++.+.
T Consensus 39 ~~~~~i~l~a~lfGp~~G~lvg~ig~~L~dll~ 71 (182)
T PRK13661 39 LAYAFLALFAVLFGPVVGFLVGFIGHALKDFIA 71 (182)
T ss_pred eHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHc
Confidence 346677778999999999999999999999873
No 27
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=62.88 E-value=12 Score=31.64 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChH
Q 025120 82 VGFVADSIGATIGAGAAFLLGRTIGKP 108 (257)
Q Consensus 82 ~~~~~~~~g~~lG~~~~y~igR~~g~~ 108 (257)
.......+....||..+|.+||++||.
T Consensus 130 ~~~~~~i~~~~~gD~~A~l~G~~fGk~ 156 (259)
T PF01148_consen 130 PLALIGILILGIGDSFAYLVGRRFGKH 156 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 345567778889999999999999997
No 28
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=62.61 E-value=13 Score=28.62 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHhChH
Q 025120 87 DSIGATIGAGAAFLLGRTIGKP 108 (257)
Q Consensus 87 ~~~g~~lG~~~~y~igR~~g~~ 108 (257)
+.+|.++|.+++|+++|...+.
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 4678888999999999987554
No 29
>COG2426 Predicted membrane protein [Function unknown]
Probab=62.02 E-value=71 Score=24.62 Aligned_cols=105 Identities=13% Similarity=0.039 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH---HhhcC---------chHHHHHHHHHHhcCchhhhHHhhcCCCc
Q 025120 78 FGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVI---SKLKD---------YPQFRSVALAIQRSGFKIVLLLRLVPLLP 145 (257)
Q Consensus 78 ~g~~~~~~~~~~g~~lG~~~~y~igR~~g~~~~~---~~~~~---------~~~~~~~~~~~~~~g~~~v~~~r~~P~~p 145 (257)
++++.....+.+|...=+.+-+.+-+...+-..+ +++.+ ++..+|.....||+|+.-+.+.-.+| +|
T Consensus 18 ~~~~Eal~~silGvL~l~~lL~~~l~~id~im~kl~~~rl~r~~~lY~~~~~r~~rka~~yVER~G~iGL~iFvAIP-LP 96 (142)
T COG2426 18 LSPLEALLLSILGVLPLSLLLPLLLDPIDRIMLKLKWTRLQRPACLYDWLVNRTRRKAKGYVERYGFIGLIIFVAIP-LP 96 (142)
T ss_pred CCHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHhhcccCchHHHHHHHHHHHHHhccCcHhhhhhhhhhheeecc-CC
Confidence 6678888888888666666665555554332111 11111 11222333447899997776666666 55
Q ss_pred hh---HhhHhhhcccCChhhHHHHHHHhHHHHHHHHHHHHh
Q 025120 146 FN---MLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGT 183 (257)
Q Consensus 146 ~~---~~~~~aG~~~~~~~~f~~~~~lg~~p~~~~~~~~G~ 183 (257)
.+ --+++|-..+++.++=+.+-.+|......+.+..+.
T Consensus 97 ~TG~wtgaLaA~llgI~~r~a~~al~~Gg~is~~vt~l~s~ 137 (142)
T COG2426 97 GTGAWTGALAAYLLGIRERFAFAALSAGGLISGAVTTLPSI 137 (142)
T ss_pred CccHhHHHHHHHHHcCchHHHHHHHHHhhHHHHHHHHhhcc
Confidence 32 334666677888887777777776666655555443
No 30
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=61.16 E-value=7.9 Score=34.10 Aligned_cols=38 Identities=16% Similarity=0.195 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHhhcCchHHH
Q 025120 84 FVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFR 121 (257)
Q Consensus 84 ~~~~~~g~~lG~~~~y~igR~~g~~~~~~~~~~~~~~~ 121 (257)
.+...+....+|+.+|+.||.+||+.+-.+.+-++.+|
T Consensus 154 vl~l~~~vw~sDt~AYf~Gr~fGk~KL~P~ISPkKTwE 191 (285)
T PRK11624 154 LLYVMILVWGADSGAYMFGKLFGKHKLAPKVSPGKTWE 191 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCCCCchh
Confidence 34445567889999999999999977665555334443
No 31
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=60.55 E-value=41 Score=27.75 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=36.2
Q ss_pred cCChhhHHHHHHHhHHHHHHHHHHHHhhhccchhhcccccccchhHHHHHHHHHHHHHHHh
Q 025120 157 PVPLLEYMLASWIGMMPITLALVYVGTTLKDLSDVTHGWNEFSKTRWAFLIFGLVVSALAE 217 (257)
Q Consensus 157 ~~~~~~f~~~~~lg~~p~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~ 217 (257)
|=+++++++...++.+.|.+++..-+..=.++.. +...+...++|.++.++|.
T Consensus 158 r~~~~K~~lv~~~sm~lWi~v~i~t~~lPtslN~--------~L~pi~l~IiGav~lalRf 210 (226)
T COG4858 158 RPGTWKYLLVAVLSMLLWIAVMIATVFLPTSLNP--------QLPPIALTIIGAVILALRF 210 (226)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhhCCCcCCc--------CCchHHHHHHHHHHHHHHH
Confidence 5678999999999999999998554443233221 2234666677777777765
No 32
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=58.77 E-value=68 Score=23.51 Aligned_cols=38 Identities=26% Similarity=0.240 Sum_probs=29.2
Q ss_pred CchHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 025120 65 VPASVLTLGGGYL-FGLPVGFVADSIGATIGAGAAFLLG 102 (257)
Q Consensus 65 iP~~~~~~~~G~~-~g~~~~~~~~~~g~~lG~~~~y~ig 102 (257)
+|.+++...+|.. .+++.-+..+.+|...-..+.-++|
T Consensus 83 ~P~~~~~~~ag~~~~~~~~f~~~~~~g~~~~~~~~~~~G 121 (123)
T PF09335_consen 83 LPFDVVNYLAGITRMPFRRFFLASLIGKLPWTILYVLLG 121 (123)
T ss_pred ccHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899988888876 6777777777788777776666555
No 33
>COG1238 Predicted membrane protein [Function unknown]
Probab=56.00 E-value=43 Score=26.89 Aligned_cols=66 Identities=17% Similarity=0.169 Sum_probs=50.5
Q ss_pred HHHHhcCchhhhH-----HhhcCCCchhHhhHhhhcccCChhhHHHHHHHhHHHHHHHHHHHHhhhccchhh
Q 025120 125 LAIQRSGFKIVLL-----LRLVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLKDLSDV 191 (257)
Q Consensus 125 ~~~~~~g~~~v~~-----~r~~P~~p~~~~~~~aG~~~~~~~~f~~~~~lg~~p~~~~~~~~G~~l~~~~~~ 191 (257)
...++++...+++ +=+.| +|.++.-...-..+.+.+.+...+.+|+.....+-.++|+...+....
T Consensus 12 ~~~~~~a~~~Lf~vaF~eat~lP-~~sE~~l~~m~~~~~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~ 82 (161)
T COG1238 12 LMSQAYAYAGLFIVAFLEATLLP-VPSEVLLAPMLLLGLNAWILALVATLGSVLGGLVNYALGRFLPEFIAR 82 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHcCCchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHH
Confidence 3345666555544 34568 666888877777789999999999999999999999999988764443
No 34
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=53.36 E-value=1.4e+02 Score=25.25 Aligned_cols=81 Identities=21% Similarity=0.192 Sum_probs=51.1
Q ss_pred chHHHHHHHHHHHHhcCCChH-HHHHHHHHHhhhcccCchH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025120 29 PVEKILKDFLTWVDQDLGPWG-PLVLAVAYIPLTILAVPAS-VLTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIG 106 (257)
Q Consensus 29 ~~~~~l~~l~~~~~~~~g~~~-~~~~~~~~~~~~~~~iP~~-~~~~~~G~~~g~~~~~~~~~~g~~lG~~~~y~igR~~g 106 (257)
...+.+++..+-.. .+++.. .++.............+-. .-...-|...|.+...+-+++|+++.-.++=..||...
T Consensus 33 ~~~~~l~~~i~~~g-~~~pl~~fil~~l~~~~~~iP~~il~l~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~gr~~~ 111 (223)
T COG0398 33 LDPETLREWIQAYG-ALGPLVFFILLYLVATLPIIPGSILTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLGRDWV 111 (223)
T ss_pred cCHHHHHHHHHHcC-chHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 44444554444444 344444 6666555555555544433 34455677888888888888899888888888888665
Q ss_pred hHHH
Q 025120 107 KPFV 110 (257)
Q Consensus 107 ~~~~ 110 (257)
++.+
T Consensus 112 ~~~~ 115 (223)
T COG0398 112 LKFV 115 (223)
T ss_pred HHHh
Confidence 4433
No 35
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=52.80 E-value=55 Score=27.25 Aligned_cols=69 Identities=19% Similarity=0.236 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcccCch--HHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhCh
Q 025120 31 EKILKDFLTWVDQDLGPWGPLVLAVAYIPLTILAVPA--SVLTLGGGYL-FGLPVGFVADSIGATIGAGAAFLLGRTIGK 107 (257)
Q Consensus 31 ~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~iP~--~~~~~~~G~~-~g~~~~~~~~~~g~~lG~~~~y~igR~~g~ 107 (257)
++.++...+|++ .+|.+..++.=+ +|+ +...+.+|.. +++..=.+.+.+|+.+=+.+..++|..+|+
T Consensus 97 ~~~l~~a~~~f~-r~G~~~vf~~RF---------ip~vRt~ip~~AG~~~m~~~~F~~~n~~ga~iW~~~~~~lGy~~G~ 166 (208)
T COG0586 97 RKKLDKAELLFE-RHGLFAIFLGRF---------IPGVRTLVPIVAGMSKMPLRRFLLYNILGALLWALVLTLLGYLLGE 166 (208)
T ss_pred HHHHHHHHHHHH-HcCchhhhhhcc---------cchhHhhhhHhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345667778888 678765433222 344 3455567766 778888888899999999999999998886
Q ss_pred HH
Q 025120 108 PF 109 (257)
Q Consensus 108 ~~ 109 (257)
..
T Consensus 167 ~~ 168 (208)
T COG0586 167 VI 168 (208)
T ss_pred ch
Confidence 54
No 36
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=52.64 E-value=31 Score=27.29 Aligned_cols=34 Identities=6% Similarity=0.230 Sum_probs=24.2
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHcchHHHH
Q 025120 1 MAFTWGSALRITLLILLVAAVVTACFTLPVEKIL 34 (257)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 34 (257)
|.++|+....-++-++++..++--+.|-|+.+.+
T Consensus 1 M~~~~~~~~~~~inF~il~~iL~~f~~kpi~~~l 34 (159)
T PRK13461 1 MEINIPTIIATIINFIILLLILKHFFFDKIKAVI 34 (159)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 8999988887777666666665556666766555
No 37
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=51.83 E-value=1.2e+02 Score=27.14 Aligned_cols=39 Identities=23% Similarity=0.236 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHhChHHHHHhhcCchHHHHHHHHHHhcCch
Q 025120 88 SIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSGFK 133 (257)
Q Consensus 88 ~~g~~lG~~~~y~igR~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~ 133 (257)
.+.+.+|+.+.|.++-++++.... .+++++++++|-...
T Consensus 41 ~v~~ligai~~~li~~~~~~~~~~-------~~~~le~~i~k~~~~ 79 (356)
T COG4956 41 YVDALIGAIIFFLISFWFGKYVLN-------WLKRLEEQIRKLPVT 79 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhcCHH
Confidence 334566666666666665443221 334555556655443
No 38
>PRK09609 hypothetical protein; Provisional
Probab=50.12 E-value=89 Score=27.91 Aligned_cols=14 Identities=7% Similarity=-0.036 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 025120 90 GATIGAGAAFLLGR 103 (257)
Q Consensus 90 g~~lG~~~~y~igR 103 (257)
+..+.+.++|++-+
T Consensus 89 ~GlI~Glf~~~~fk 102 (312)
T PRK09609 89 YGFIPGIVGWFFFK 102 (312)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444433
No 39
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=46.38 E-value=76 Score=20.88 Aligned_cols=10 Identities=0% Similarity=0.358 Sum_probs=4.8
Q ss_pred HHHHHHHHHH
Q 025120 119 QFRSVALAIQ 128 (257)
Q Consensus 119 ~~~~~~~~~~ 128 (257)
+.++.++..+
T Consensus 56 ~l~~le~e~~ 65 (68)
T PF06305_consen 56 ELKKLEKELE 65 (68)
T ss_pred HHHHHHHHHH
Confidence 4555554443
No 40
>PF03773 DUF318: Predicted permease; InterPro: IPR005524 This family of predicted integral membrane proteins.
Probab=45.22 E-value=2.2e+02 Score=25.14 Aligned_cols=42 Identities=12% Similarity=0.032 Sum_probs=29.9
Q ss_pred hhhhHHhhcCCCchhHhhHhhhcccCChhhHHHHHHHhHHHH
Q 025120 133 KIVLLLRLVPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPI 174 (257)
Q Consensus 133 ~~v~~~r~~P~~p~~~~~~~aG~~~~~~~~f~~~~~lg~~p~ 174 (257)
...+++-..|+-+...++.+.++.+..-..-...+++-+.|.
T Consensus 54 ~a~~~G~~~p~C~c~~~P~~~~l~~~Ga~~~~~~aFl~a~p~ 95 (307)
T PF03773_consen 54 LASLLGALLPVCSCGAVPVARGLLRKGAPLGAAMAFLLASPL 95 (307)
T ss_pred HHHHHHhccCCCcccHHHHHHHHHHCCCCcchhHHHHHhhHH
Confidence 445778889999999999999988766555555555444443
No 41
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=42.26 E-value=4.5e+02 Score=27.98 Aligned_cols=17 Identities=18% Similarity=0.135 Sum_probs=10.9
Q ss_pred HHHHHHH-HHHHHhhhcc
Q 025120 171 MMPITLA-LVYVGTTLKD 187 (257)
Q Consensus 171 ~~p~~~~-~~~~G~~l~~ 187 (257)
.+|-.+. .+.+||....
T Consensus 679 ~~P~~l~~l~~~GY~yTa 696 (1109)
T PRK10929 679 GAPLVAALASALGYLATA 696 (1109)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 4555444 6788887755
No 42
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.43 E-value=78 Score=24.45 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCh
Q 025120 83 GFVADSIGATIGAGAAFLLGRTIGK 107 (257)
Q Consensus 83 ~~~~~~~g~~lG~~~~y~igR~~g~ 107 (257)
...++.+|-++|-.++|.+.|..-+
T Consensus 7 ~W~~a~igLvvGi~IG~li~Rlt~~ 31 (138)
T COG3105 7 TWEYALIGLVVGIIIGALIARLTNR 31 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcch
Confidence 3456678888999999999997644
No 43
>PF03613 EIID-AGA: PTS system mannose/fructose/sorbose family IID component; InterPro: IPR004704 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=39.59 E-value=2.6e+02 Score=24.37 Aligned_cols=94 Identities=17% Similarity=0.228 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhhcCchHHHHHHHHHHhcCchhhhHHhhcCC---CchhHhhHhhh
Q 025120 78 FGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSGFKIVLLLRLVPL---LPFNMLNYLLS 154 (257)
Q Consensus 78 ~g~~~~~~~~~~g~~lG~~~~y~igR~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~r~~P~---~p~~~~~~~aG 154 (257)
+|+..-+++..+-...-...+|..|.+.|++.+.+. +...++++.+..+-=|..+ ++-+++- +. +-..+..|
T Consensus 133 lGpil~~~~~~~~~~~~r~~~~~~GY~~G~~~i~~l--~~~~~~~i~~~asilGl~v--vGal~as~V~v~-~~l~~~~g 207 (264)
T PF03613_consen 133 LGPILFLLLYNIIHFFIRYFGFFLGYKLGTSFITKL--QSGLLQKITEAASILGLMV--VGALIASYVNVS-TPLTITIG 207 (264)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHH--HHHHHHHeEEEe-eeEEEecC
Confidence 344444444444445666677888888899888865 3456777666665544432 2333221 22 22234445
Q ss_pred cccCChhhHHHHHHHhHHHHHH
Q 025120 155 VTPVPLLEYMLASWIGMMPITL 176 (257)
Q Consensus 155 ~~~~~~~~f~~~~~lg~~p~~~ 176 (257)
-..++.-..+=.-+-+-+|-.+
T Consensus 208 ~~~~~lQ~~lD~I~P~lLpl~~ 229 (264)
T PF03613_consen 208 GVTISLQEILDGIMPGLLPLLL 229 (264)
T ss_pred CceeeHHHhHHhHHhhHHHHHH
Confidence 5566777766666666555443
No 44
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=38.93 E-value=1.3e+02 Score=22.28 Aligned_cols=27 Identities=19% Similarity=-0.009 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025120 79 GLPVGFVADSIGATIGAGAAFLLGRTI 105 (257)
Q Consensus 79 g~~~~~~~~~~g~~lG~~~~y~igR~~ 105 (257)
++|.++++......+.+.+.++.+++-
T Consensus 70 ~~~~a~liv~~~~l~la~i~~~~~~~~ 96 (121)
T PF07332_consen 70 PPWLAFLIVAGLYLLLALILLLIGRRR 96 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567787777777777777777777654
No 45
>PF12822 DUF3816: Protein of unknown function (DUF3816); InterPro: IPR024529 Energy-coupling factor (ECF) transporters consist of a substrate-specific component and an energy-coupling module []. The substrate-binding component is a small integral membrane protein which captures specific substrates and forms an active transporter in the presence of the energy-coupling AT module. The energy coupling module is composed of an ATPase typical of the ATP binding cassette (ABC) superfamily and a characteristic transmembrane protein. Unlike the ABC transporters, an energy coupling module can be shared between multiple different substrate-binding components. This entry represents the substrate-specific component from a number of different ECF transporters.; PDB: 3P5N_A.
Probab=38.80 E-value=42 Score=26.50 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 025120 67 ASVLTLGGGYLFGLPVGFVADSIGATIGAGA 97 (257)
Q Consensus 67 ~~~~~~~~G~~~g~~~~~~~~~~g~~lG~~~ 97 (257)
..+..+.+|+.+|++.|.++..+...++...
T Consensus 31 ~~i~~ii~~~l~Gp~~G~~~g~i~~il~~l~ 61 (172)
T PF12822_consen 31 SFIPIIIAGFLLGPVWGALVGFISDILSFLI 61 (172)
T ss_dssp CCHHHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677899999999998887766665554
No 46
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=38.54 E-value=1.7e+02 Score=21.98 Aligned_cols=44 Identities=20% Similarity=0.241 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHhhcCchHHHHHHHHHHhcC
Q 025120 87 DSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSG 131 (257)
Q Consensus 87 ~~~g~~lG~~~~y~igR~~g~~~~~~~~~~~~~~~~~~~~~~~~g 131 (257)
...+..+|..++-++|-++-++.-+.+-+ .=.+++++...++++
T Consensus 51 ~p~~~lig~~l~v~~gg~~l~rlKRGrPe-~yl~r~l~~~~~~~~ 94 (111)
T TIGR03750 51 IPTGALLGPILVVLIGGKLLARLKRGKPE-GYLYRKLEWKLARLG 94 (111)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHcCCCc-hHHHHHHHHHHHHcC
Confidence 34455556655555554432322111111 114567777777765
No 47
>PRK14402 membrane protein; Provisional
Probab=38.13 E-value=2.3e+02 Score=23.49 Aligned_cols=60 Identities=20% Similarity=0.110 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhChHHHHHhhcCchHHHHHHHHHHh------------cCchhhhHHhhcC
Q 025120 82 VGFVADSIGATIGAG-AAFLLGRTIGKPFVISKLKDYPQFRSVALAIQR------------SGFKIVLLLRLVP 142 (257)
Q Consensus 82 ~~~~~~~~g~~lG~~-~~y~igR~~g~~~~~~~~~~~~~~~~~~~~~~~------------~g~~~v~~~r~~P 142 (257)
...+...++-.+|+. .+|+++|..+. .+++.=++|.-...+-|...+ +|...+.+++..+
T Consensus 4 ~~~l~~~~~YllGsip~~~~v~k~~g~-DiR~~GSgN~GatNv~R~~G~~~g~~v~l~D~lKG~l~v~l~~~~~ 76 (198)
T PRK14402 4 TAVLALLLAYLFGSIPAGAWVARTRGV-DIRKVGSGNSGATNVLRSLGKGPALVVAFFDVLKGGIAVLLARALG 76 (198)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHcCC-ChhhcCCCCccHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345556667888886 79999997554 455444444433333332221 3566666666664
No 48
>PRK01637 hypothetical protein; Reviewed
Probab=38.13 E-value=56 Score=28.56 Aligned_cols=41 Identities=10% Similarity=0.186 Sum_probs=31.4
Q ss_pred HhhHhhhcccCChhhHHHHHHHhHHHHHHHHHHHHhhhccc
Q 025120 148 MLNYLLSVTPVPLLEYMLASWIGMMPITLALVYVGTTLKDL 188 (257)
Q Consensus 148 ~~~~~aG~~~~~~~~f~~~~~lg~~p~~~~~~~~G~~l~~~ 188 (257)
+.-+...-.+++++.-+.+++++.+.|...-...+..+.+.
T Consensus 189 ~lY~~~P~~k~~~r~~~~Ga~~a~~~w~~~~~~f~~Yv~~~ 229 (286)
T PRK01637 189 LLYSVVPNKKVPFRHALVGALVAALLFELGKKGFALYITTF 229 (286)
T ss_pred HHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344445688999999999999999998888887777654
No 49
>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]
Probab=37.83 E-value=2.2e+02 Score=24.78 Aligned_cols=103 Identities=19% Similarity=0.206 Sum_probs=66.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh--ChHHHHHhhcC---chHHH---HHHHHH----HhcCchhhhHHhh
Q 025120 73 GGGYLFGLPVGFVADSIGATIGAGAAFLLGRTI--GKPFVISKLKD---YPQFR---SVALAI----QRSGFKIVLLLRL 140 (257)
Q Consensus 73 ~~G~~~g~~~~~~~~~~g~~lG~~~~y~igR~~--g~~~~~~~~~~---~~~~~---~~~~~~----~~~g~~~v~~~r~ 140 (257)
..+.......++..+.++..+|-..+|.+.|+- ||..++....- -|..- .+-..+ -..|++.++++-.
T Consensus 64 ~~a~~~Sl~IA~~s~~~s~~lg~~aA~al~r~~~~g~~~~~~l~~~PlvvP~Iv~gi~ll~~f~~~~~~~~~~~ivlaH~ 143 (267)
T COG1177 64 LSALWNSLLIALLSALLATLLGTLAALALARYRFRGKNLLEGLILLPLVVPDIVTGIALLLLFAALGLPGGFWTIVLAHI 143 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHhhhcccHHHHHHHHHHHHHHcCCCccHHHHHHHHH
Confidence 344456677888889999999999999999962 34433322111 11110 111112 3457888999998
Q ss_pred cCCCchhHhhHhhhcccCChhhHHHHHHHhHHHHH
Q 025120 141 VPLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPIT 175 (257)
Q Consensus 141 ~P~~p~~~~~~~aG~~~~~~~~f~~~~~lg~~p~~ 175 (257)
.--+||.+....+.+.+++..-=-.+.-+|+-+|.
T Consensus 144 ~~~lP~v~~~v~a~l~~~d~~LeeAA~dLGAs~~~ 178 (267)
T COG1177 144 VFALPFVVVVVSARLQGFDRSLEEAARDLGASPWQ 178 (267)
T ss_pred HHHhhHHHHHHHHHHHhCChHHHHHHHHcCCCHHH
Confidence 88899999999999888887444444444444443
No 50
>PRK09395 actP acetate permease; Provisional
Probab=37.46 E-value=3.8e+02 Score=25.76 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=13.7
Q ss_pred hcccCChhhHHHHHHHhHHHHHHHHHHHHhh
Q 025120 154 SVTPVPLLEYMLASWIGMMPITLALVYVGTT 184 (257)
Q Consensus 154 G~~~~~~~~f~~~~~lg~~p~~~~~~~~G~~ 184 (257)
.++++| +..+..+. ..-..+|+..|-.
T Consensus 176 ~~~gi~---~~~~ili~-~~i~~iYt~~GGm 202 (551)
T PRK09395 176 LLFGLN---YHVAVVLV-GVLMMVYVLFGGM 202 (551)
T ss_pred HHhCCC---HHHHHHHH-HHHHHHHHhhcch
Confidence 344555 33444443 3345667777654
No 51
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=37.45 E-value=1.2e+02 Score=21.60 Aligned_cols=21 Identities=43% Similarity=0.624 Sum_probs=14.0
Q ss_pred CcccHHHHHHHHHHHHHHHHH
Q 025120 1 MAFTWGSALRITLLILLVAAV 21 (257)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (257)
|..+|++..+.++++++++++
T Consensus 1 m~~~w~~~l~~l~~~~l~~~l 21 (90)
T PF11808_consen 1 MRNSWRRELWRLLLLLLAAAL 21 (90)
T ss_pred CCchHHHHHHHHHHHHHHHHH
Confidence 888999988766555444443
No 52
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=36.57 E-value=79 Score=25.06 Aligned_cols=17 Identities=12% Similarity=0.139 Sum_probs=7.9
Q ss_pred HHHHHHHHhhhHHHHHH
Q 025120 69 VLTLGGGYLFGLPVGFV 85 (257)
Q Consensus 69 ~~~~~~G~~~g~~~~~~ 85 (257)
.+.+.+|.+.|||++..
T Consensus 33 ~iNviaaVlLGP~ya~~ 49 (150)
T PF09512_consen 33 MINVIAAVLLGPWYAVA 49 (150)
T ss_pred HHHHHHHHHhchHHHHH
Confidence 34444444445444443
No 53
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=36.54 E-value=1.2e+02 Score=23.21 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhChH
Q 025120 84 FVADSIGATIGAGAAFLLGRTIGKP 108 (257)
Q Consensus 84 ~~~~~~g~~lG~~~~y~igR~~g~~ 108 (257)
-..+.+++.+|-.++|++.|++.++
T Consensus 96 e~~~~l~~l~~l~~~~~~~~~~~~~ 120 (135)
T PF04246_consen 96 ELWAILGGLLGLALGFLILRLFDRR 120 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5667778888888899999888554
No 54
>COG2839 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.65 E-value=2.3e+02 Score=22.57 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=24.2
Q ss_pred hhhccc-CchHHHHHHHHHhhh----------HHHHHHHHHHHHHHHHH-HHHHHHHHhCh
Q 025120 59 PLTILA-VPASVLTLGGGYLFG----------LPVGFVADSIGATIGAG-AAFLLGRTIGK 107 (257)
Q Consensus 59 ~~~~~~-iP~~~~~~~~G~~~g----------~~~~~~~~~~g~~lG~~-~~y~igR~~g~ 107 (257)
+..+.| +|++.++.++-.+++ +|.+..+..+-....|. .+++-.|++|.
T Consensus 18 vGlv~PaiPs~lli~~G~l~y~~gf~~~~s~~f~~v~~lvtlli~~aD~vA~~~g~kr~Gg 78 (160)
T COG2839 18 VGLVYPAIPSTLLIFAGFLAYGFGFQIYLSGVFWLVMALVTLLIIAADYVANIWGVKRYGG 78 (160)
T ss_pred HhhhhcccchHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCC
Confidence 344455 899887776533332 44444444444444443 24444444443
No 55
>PLN02594 phosphatidate cytidylyltransferase
Probab=35.25 E-value=3.5e+02 Score=24.60 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHhhcCchHHH
Q 025120 85 VADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFR 121 (257)
Q Consensus 85 ~~~~~g~~lG~~~~y~igR~~g~~~~~~~~~~~~~~~ 121 (257)
+.........|+.+|+.||.+||..+. +++-++.++
T Consensus 128 ~l~~~lV~~nDi~AY~~G~~fGk~kL~-~iSPkKTwE 163 (342)
T PLN02594 128 LLPASLIVINDIAAYLFGFFFGRTPLI-KLSPKKTWE 163 (342)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcCCCCC-ccCCCCchh
Confidence 334455788999999999999997665 444333443
No 56
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=35.00 E-value=2e+02 Score=21.84 Aligned_cols=13 Identities=23% Similarity=0.565 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhcC
Q 025120 119 QFRSVALAIQRSG 131 (257)
Q Consensus 119 ~~~~~~~~~~~~g 131 (257)
.+++++..++++|
T Consensus 85 l~r~l~~~l~~~g 97 (121)
T PF11990_consen 85 LYRRLQWRLARRG 97 (121)
T ss_pred HHHHHHHHHHHhc
Confidence 3566777777765
No 57
>PLN02953 phosphatidate cytidylyltransferase
Probab=34.42 E-value=30 Score=31.89 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHhhc
Q 025120 84 FVADSIGATIGAGAAFLLGRTIGKPFVISKLK 115 (257)
Q Consensus 84 ~~~~~~g~~lG~~~~y~igR~~g~~~~~~~~~ 115 (257)
+++..+.....|+.+|+.||.+||..+. .++
T Consensus 271 ~l~~~~~vw~~Di~AY~~G~~fGk~kl~-~IS 301 (403)
T PLN02953 271 TLISFSGVIATDTFAFLGGKAFGRTPLT-SIS 301 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCC-cCC
Confidence 4566777888999999999999997664 443
No 58
>COG4720 Predicted membrane protein [Function unknown]
Probab=33.99 E-value=58 Score=26.50 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025120 68 SVLTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGR 103 (257)
Q Consensus 68 ~~~~~~~G~~~g~~~~~~~~~~g~~lG~~~~y~igR 103 (257)
+.....+.++||+..|.++..+|..+=|.++++-.-
T Consensus 41 da~i~las~lfGs~~G~lvg~iG~al~Dll~gy~~W 76 (177)
T COG4720 41 DAGIALASFLFGSRAGALVGGLGHALKDLLSGYPSW 76 (177)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHHHhcCCccH
Confidence 456777788899999999999999999988854433
No 59
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=33.71 E-value=87 Score=24.84 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhChH
Q 025120 85 VADSIGATIGAGAAFLLGRTIGKP 108 (257)
Q Consensus 85 ~~~~~g~~lG~~~~y~igR~~g~~ 108 (257)
..+.++.++|-.++|++.|++.++
T Consensus 104 ~~~~~~~~~g~~~g~~~~r~~~~~ 127 (154)
T PRK10862 104 LAALCGALLGGVGGFLLARGLSRK 127 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777888889988877543
No 60
>COG2832 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.67 E-value=1.2e+02 Score=23.01 Aligned_cols=52 Identities=19% Similarity=0.153 Sum_probs=32.0
Q ss_pred HHHHhhhccc-CchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhhcCchHHHHHHHHHHhcC
Q 025120 55 VAYIPLTILA-VPASVLTLGGGYLFGLPVGFVADSIGATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSG 131 (257)
Q Consensus 55 ~~~~~~~~~~-iP~~~~~~~~G~~~g~~~~~~~~~~g~~lG~~~~y~igR~~g~~~~~~~~~~~~~~~~~~~~~~~~g 131 (257)
.+.+...++| +|.+++.+++.+.| .| ..+..++++.+++++.+.-+..++++
T Consensus 15 ~LGIiGifLPlLPTTPFlLLaa~cF-----------------------aR--sSpRf~~WLl~~~~fg~~v~~~~e~~ 67 (119)
T COG2832 15 ALGIIGIFLPLLPTTPFLLLAAACF-----------------------AR--SSPRFHAWLLRHKYFGPYVRDWREGG 67 (119)
T ss_pred HHHHHHhcCcccCCcHHHHHHHHHH-----------------------Hc--CCcHHHHHHHcCchhhHHHHHHHHcC
Confidence 3444556666 78888877754433 33 34455666666677776666666655
No 61
>PRK14407 membrane protein; Provisional
Probab=32.24 E-value=71 Score=27.02 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhChHHHHHhhcCchHHHHHHHHH
Q 025120 82 VGFVADSIGATIGAG-AAFLLGRTIGKPFVISKLKDYPQFRSVALAI 127 (257)
Q Consensus 82 ~~~~~~~~g~~lG~~-~~y~igR~~g~~~~~~~~~~~~~~~~~~~~~ 127 (257)
.|.+...+|..+|+. .+|+++|.+....+++.=++|.-....-|.+
T Consensus 6 ~~~~~l~i~YLlGSIp~g~iv~k~~~g~DiR~~GSGN~GaTNv~R~l 52 (219)
T PRK14407 6 AGAVGLAIAYLLGSTPTGYLAGKLLKGIDIREHGSKSTGATNVLRTL 52 (219)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHhCCCCCCcCCCCCccHHHHHHHH
Confidence 344555678888986 7999999875544554444554333333433
No 62
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=31.67 E-value=1.6e+02 Score=23.19 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhChH
Q 025120 85 VADSIGATIGAGAAFLLGRTIGKP 108 (257)
Q Consensus 85 ~~~~~g~~lG~~~~y~igR~~g~~ 108 (257)
.+..++.++|...+|++.|++-|+
T Consensus 104 ~~~~~~~~lg~~l~fl~~r~ysRk 127 (150)
T COG3086 104 LIVIFGAFLGLALGFLLARRYSRK 127 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999988553
No 63
>PRK14400 membrane protein; Provisional
Probab=31.20 E-value=90 Score=26.01 Aligned_cols=37 Identities=22% Similarity=0.060 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHhChHHHHHhhcCchH
Q 025120 83 GFVADSIGATIGAG-AAFLLGRTIGKPFVISKLKDYPQ 119 (257)
Q Consensus 83 ~~~~~~~g~~lG~~-~~y~igR~~g~~~~~~~~~~~~~ 119 (257)
+.++..++-.+|+. .+|+++|.+....+++.=++|.-
T Consensus 7 ~~~~~i~~YllGsip~~~~i~k~~~g~DiR~~GSgN~G 44 (201)
T PRK14400 7 GAVLVAAGYLAGSIPFGVVLGRLVLGVDVRTVGSGNIG 44 (201)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhCCCCccccCCCCch
Confidence 45555668888886 79999998755555554445543
No 64
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=30.62 E-value=4.5e+02 Score=24.56 Aligned_cols=33 Identities=12% Similarity=0.177 Sum_probs=24.1
Q ss_pred HhhHhhhcccCChhhHHHHHHHhHHHHHHHHHH
Q 025120 148 MLNYLLSVTPVPLLEYMLASWIGMMPITLALVY 180 (257)
Q Consensus 148 ~~~~~aG~~~~~~~~f~~~~~lg~~p~~~~~~~ 180 (257)
+..++.|..|....+|......+.+...+..++
T Consensus 146 ~~i~~~~~lRa~~p~~~~~~I~~~I~~~i~~t~ 178 (459)
T PF10337_consen 146 VFIYFHGWLRAKNPKLNFPVIFGSIFVDIFLTY 178 (459)
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHh
Confidence 445777888888877888888887776655554
No 65
>PF11364 DUF3165: Protein of unknown function (DUF3165); InterPro: IPR021506 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=29.64 E-value=2e+02 Score=20.21 Aligned_cols=13 Identities=15% Similarity=0.312 Sum_probs=8.0
Q ss_pred hcccCchHHHHHH
Q 025120 61 TILAVPASVLTLG 73 (257)
Q Consensus 61 ~~~~iP~~~~~~~ 73 (257)
..+-.|+|++...
T Consensus 48 ki~q~P~Eifv~~ 60 (81)
T PF11364_consen 48 KIFQLPPEIFVGL 60 (81)
T ss_pred HHHhCCHHHHHHH
Confidence 3445788876544
No 66
>PRK00220 putative glycerol-3-phosphate acyltransferase PlsY; Provisional
Probab=27.93 E-value=1.3e+02 Score=25.03 Aligned_cols=57 Identities=23% Similarity=0.166 Sum_probs=34.4
Q ss_pred HHHHHHHHHHH-HHHHHHHHhChHHHHHhhcCchHHHHHHHHHHh------------cCchhhhHHhhcC
Q 025120 86 ADSIGATIGAG-AAFLLGRTIGKPFVISKLKDYPQFRSVALAIQR------------SGFKIVLLLRLVP 142 (257)
Q Consensus 86 ~~~~g~~lG~~-~~y~igR~~g~~~~~~~~~~~~~~~~~~~~~~~------------~g~~~v~~~r~~P 142 (257)
+..+|-.+|+. .+|+++|.+++..+++.=++|.-...+-|...+ +|...+.+++..+
T Consensus 8 ~~i~~YLlGsip~~~ii~k~~~~~DiR~~GSgN~GatNv~R~~G~~~gilvll~D~lKG~l~v~la~~~~ 77 (198)
T PRK00220 8 LILLAYLLGSIPFALLVGKLFGLPDPREHGSGNPGATNVLRIGGKKAAIATLLGDALKGTLAVLLAYLFG 77 (198)
T ss_pred HHHHHHHHHhhhHHHHHHHHhCCCChhhcCCCCccHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45667888886 799999988655566554455433333333222 3555666666654
No 67
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=27.64 E-value=99 Score=25.57 Aligned_cols=27 Identities=15% Similarity=0.444 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHH
Q 025120 84 FVADSIGATIGAGAAFLLGRTIGKPFV 110 (257)
Q Consensus 84 ~~~~~~g~~lG~~~~y~igR~~g~~~~ 110 (257)
++++.++.++|..++|++.+...+..+
T Consensus 3 ii~~i~~~~vG~~~G~~~~~~~~~~~~ 29 (201)
T PF12072_consen 3 IIIAIVALIVGIGIGYLVRKKINRKKL 29 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888887765444
No 68
>COG1916 Uncharacterized homolog of PrgY (pheromone shutdown protein) [Function unknown]
Probab=27.22 E-value=5e+02 Score=23.91 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHhcCCCh
Q 025120 17 LVAAVVTACFTLPVEKILKDFLTWVDQDLGPW 48 (257)
Q Consensus 17 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~g~~ 48 (257)
++..+++.+++.+.+-..+.+.+|+- ..|.+
T Consensus 259 l~~~~iv~~~~~~~~~l~~~~~~W~l-~ng~l 289 (388)
T COG1916 259 LLIFLIVICFGLGGDLLLDALLQWFL-FNGVL 289 (388)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHH-HhhHH
Confidence 33344444555555444567788876 34443
No 69
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=26.53 E-value=93 Score=23.77 Aligned_cols=12 Identities=17% Similarity=0.124 Sum_probs=7.0
Q ss_pred HHHHHHHHHhCh
Q 025120 96 GAAFLLGRTIGK 107 (257)
Q Consensus 96 ~~~y~igR~~g~ 107 (257)
.+.|++.|+-.+
T Consensus 83 li~y~irR~~Kk 94 (122)
T PF01102_consen 83 LISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHS--
T ss_pred HHHHHHHHHhcc
Confidence 567887775544
No 70
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=26.44 E-value=56 Score=24.97 Aligned_cols=7 Identities=43% Similarity=0.662 Sum_probs=0.0
Q ss_pred CCCCCee
Q 025120 239 DLNQPLI 245 (257)
Q Consensus 239 d~~~~~~ 245 (257)
|.+.|+.
T Consensus 107 d~~~p~~ 113 (122)
T PF01102_consen 107 DTDVPLS 113 (122)
T ss_dssp -------
T ss_pred CCCCCcc
Confidence 5555553
No 71
>PF11189 DUF2973: Protein of unknown function (DUF2973); InterPro: IPR021355 This entry is represented by Bacteriophage Syn9, Gp224. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently they have no known function.
Probab=25.28 E-value=1.4e+02 Score=20.00 Aligned_cols=21 Identities=19% Similarity=0.124 Sum_probs=15.0
Q ss_pred CCCCCCCCeeEeecCCCCCCC
Q 025120 236 QPVDLNQPLIIKIEGNDDSHE 256 (257)
Q Consensus 236 ~~~d~~~~~~~~~~~~~~~~~ 256 (257)
+....-||+..|.||+--.||
T Consensus 40 ~~~~t~HPELLD~~G~~i~Ee 60 (65)
T PF11189_consen 40 TGKVTIHPELLDENGNIINEE 60 (65)
T ss_pred cCCCCCCcccCCCCcCCcCCc
Confidence 334667999999999655554
No 72
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=24.30 E-value=1.4e+02 Score=25.39 Aligned_cols=34 Identities=12% Similarity=0.298 Sum_probs=21.9
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHcchHHHH
Q 025120 1 MAFTWGSALRITLLILLVAAVVTACFTLPVEKIL 34 (257)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 34 (257)
|.++|..+..-++-++++..++--++|-|+.+.+
T Consensus 1 M~id~~t~~~qiInFlil~~lL~kfl~kPi~~~l 34 (246)
T TIGR03321 1 MLIDWFTVIAQLINFLILVWLLKRFLYRPILDAM 34 (246)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 8999987776666555555555555555665444
No 73
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=24.03 E-value=6.5e+02 Score=24.14 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=10.8
Q ss_pred CCCCCCCCCCCeeEeecC
Q 025120 233 MAEQPVDLNQPLIIKIEG 250 (257)
Q Consensus 233 ~~~~~~d~~~~~~~~~~~ 250 (257)
...+.+..+.|..+.+|=
T Consensus 414 ~~~~~~~~~gpv~v~~~y 431 (524)
T PF05977_consen 414 LALDVEPDSGPVMVTIEY 431 (524)
T ss_pred cCCCCCCCCCCEEEEEEE
Confidence 334444667788777654
No 74
>PF14163 SieB: Superinfection exclusion protein B
Probab=23.88 E-value=3.1e+02 Score=21.26 Aligned_cols=11 Identities=9% Similarity=0.078 Sum_probs=5.1
Q ss_pred hhHHHHHHHHH
Q 025120 78 FGLPVGFVADS 88 (257)
Q Consensus 78 ~g~~~~~~~~~ 88 (257)
+++|.+.....
T Consensus 32 y~~~i~~~fl~ 42 (151)
T PF14163_consen 32 YQPWIGLIFLF 42 (151)
T ss_pred cchHHHHHHHH
Confidence 44555544443
No 75
>PRK14419 membrane protein; Provisional
Probab=23.82 E-value=1.8e+02 Score=24.14 Aligned_cols=42 Identities=12% Similarity=0.018 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHhChHHHHHhhcCchHHHHHHH
Q 025120 84 FVADSIGATIGAG-AAFLLGRTIGKPFVISKLKDYPQFRSVAL 125 (257)
Q Consensus 84 ~~~~~~g~~lG~~-~~y~igR~~g~~~~~~~~~~~~~~~~~~~ 125 (257)
+++..++-.+|+. .+|+++|...+..+++.=++|.-....-|
T Consensus 5 ~l~~l~~YllGsip~~~~i~k~~~~~DiR~~GSgN~GatN~~R 47 (199)
T PRK14419 5 LLIILLAYLLGSFPSGYLAGRWLKGIDLREIGSGSTGATNVLR 47 (199)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhCCCChhhcCCCCccHHHHHH
Confidence 3455667788886 79999999766556655455543333333
No 76
>TIGR00023 acyl-phosphate glycerol 3-phosphate acyltransferase. This model represents the full length of acylphosphate:glycerol 3-phosphate acyltransferase, and integral membrane protein about 200 amino acids in length, called PlsY in Streptococcus pneumoniae, YneS in Bacillus subtilis, and YgiH in E. coli. It is found in a single copy in a large number of bacteria, including the Mycoplasmas but not Mycobacteria or spirochetes, for example. Its partner is PlsX (see TIGR00182), and the pair can replace PlsB for synthesizing 1-acylglycerol-3-phosphate.
Probab=23.82 E-value=1.4e+02 Score=24.83 Aligned_cols=57 Identities=23% Similarity=0.199 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHH-HHHHHHHHhChHHHHHhhcCchHHHHHHHHHHh------------cCchhhhHHhhc
Q 025120 85 VADSIGATIGAG-AAFLLGRTIGKPFVISKLKDYPQFRSVALAIQR------------SGFKIVLLLRLV 141 (257)
Q Consensus 85 ~~~~~g~~lG~~-~~y~igR~~g~~~~~~~~~~~~~~~~~~~~~~~------------~g~~~v~~~r~~ 141 (257)
+...+|-.+|+. .+|+++|.+.+..+++.-++|.-...+-|...+ +|...+.+++..
T Consensus 7 l~~~~~YLlGSip~~~~i~k~~~g~DiR~~GSgN~GatNv~R~~G~k~gi~vll~D~lKG~lav~l~~~~ 76 (196)
T TIGR00023 7 FLLLIGYLIGSIPFAYLVGKILKGIDIREHGSGNPGATNVLRTLGVKAALLVLIFDILKGMLAVALSFLL 76 (196)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhCCCCchhcCCCCccHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344557788886 799999987655556554444433333233221 355566666665
No 77
>PRK14418 membrane protein; Provisional
Probab=23.74 E-value=1.4e+02 Score=25.58 Aligned_cols=40 Identities=10% Similarity=0.115 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHHhChHHHHHhhcCch
Q 025120 79 GLPVGFVADSIGATIGAG-AAFLLGRTIGKPFVISKLKDYP 118 (257)
Q Consensus 79 g~~~~~~~~~~g~~lG~~-~~y~igR~~g~~~~~~~~~~~~ 118 (257)
......++..+|-.+|+. .+|+++|.+.+..+++.=++|.
T Consensus 6 ~~~~~i~~~l~~YLlGSIp~g~ii~k~~~g~DiR~~GSgN~ 46 (236)
T PRK14418 6 SILINLALFLLGYLIGSINFSIIVSKRFKKDDIREHGSKNA 46 (236)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCCCCCCCC
Confidence 333444455668888886 7999999865444454434443
No 78
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=23.69 E-value=2.2e+02 Score=23.50 Aligned_cols=53 Identities=21% Similarity=0.340 Sum_probs=31.3
Q ss_pred cCChhhHHHHHHHhHHHHHHHHHHHHhhhccchhhcccccccchhHHHHHHHHHHHHHHHh
Q 025120 157 PVPLLEYMLASWIGMMPITLALVYVGTTLKDLSDVTHGWNEFSKTRWAFLIFGLVVSALAE 217 (257)
Q Consensus 157 ~~~~~~f~~~~~lg~~p~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~ 217 (257)
+.+++++++..+++.+.|..+++.... +-... . .....|+.+++|+++..++.
T Consensus 143 r~~~~k~~~~~~~~~~~w~~~~~~~~~-lp~~i---n----p~l~~~~~iiig~i~~~~~~ 195 (206)
T PF06570_consen 143 RPSWWKYILISVLAMVLWIVIFVLTSF-LPPVI---N----PVLPPWVYIIIGVIAFALRF 195 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH-ccccC---C----cCCCHHHHHHHHHHHHHHHH
Confidence 456677777777888888877776655 32211 1 11234566666666665554
No 79
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=23.29 E-value=3.1e+02 Score=20.12 Aligned_cols=16 Identities=25% Similarity=0.196 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHhcCch
Q 025120 118 PQFRSVALAIQRSGFK 133 (257)
Q Consensus 118 ~~~~~~~~~~~~~g~~ 133 (257)
...+++.+.+++++..
T Consensus 66 ~~~d~v~~~l~~~gg~ 81 (102)
T PF06897_consen 66 ATEDKVDAALRKFGGK 81 (102)
T ss_pred CCHHHHHHHHHhcCCE
Confidence 4567788888887743
No 80
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=23.19 E-value=1.6e+02 Score=25.31 Aligned_cols=34 Identities=12% Similarity=0.355 Sum_probs=23.3
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHcchHHHH
Q 025120 1 MAFTWGSALRITLLILLVAAVVTACFTLPVEKIL 34 (257)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 34 (257)
|.++|..+..-++-++++..++--++|-|+.+.+
T Consensus 1 M~id~~t~~~qiInFlILv~lL~~fl~kPi~~~l 34 (250)
T PRK14474 1 MLIDWFTVVAQIINFLILVYLLRRFLYKPIIQVM 34 (250)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899988776666666666666566666775544
No 81
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=22.98 E-value=1.2e+02 Score=28.46 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=22.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHH
Q 025120 69 VLTLGGGYLFGLPVGFVADSIGATIG 94 (257)
Q Consensus 69 ~~~~~~G~~~g~~~~~~~~~~g~~lG 94 (257)
+-...+|++|||++|.+++.++-.+|
T Consensus 100 Ipi~l~G~LFGP~~G~l~g~lsDlLg 125 (477)
T PRK12821 100 ILVKISGLLFGPIIGIFSAATIDFLT 125 (477)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 55677899999999999999988888
No 82
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=22.77 E-value=2.2e+02 Score=18.69 Aligned_cols=12 Identities=0% Similarity=0.232 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHh
Q 025120 118 PQFRSVALAIQR 129 (257)
Q Consensus 118 ~~~~~~~~~~~~ 129 (257)
++++|+.+.+||
T Consensus 46 qKLDrIIeLLEK 57 (58)
T PF13314_consen 46 QKLDRIIELLEK 57 (58)
T ss_pred HHHHHHHHHHcc
Confidence 466676666665
No 83
>PRK14413 membrane protein; Provisional
Probab=22.49 E-value=1.3e+02 Score=24.93 Aligned_cols=40 Identities=10% Similarity=0.061 Sum_probs=25.4
Q ss_pred HHHHHHHHHHH-HHHHHHHHhChHHHHHhhcCchHHHHHHH
Q 025120 86 ADSIGATIGAG-AAFLLGRTIGKPFVISKLKDYPQFRSVAL 125 (257)
Q Consensus 86 ~~~~g~~lG~~-~~y~igR~~g~~~~~~~~~~~~~~~~~~~ 125 (257)
...+|-.+|+. .+|+++|.+.+..+++.-++|.-...+-|
T Consensus 6 ~~l~~Yl~Gsip~~~ii~k~~~g~DiR~~GSgN~GaTNv~R 46 (197)
T PRK14413 6 TSVISFLLGSIPTGYFITKKLCGIDIRTKGSGNIGSTNVKR 46 (197)
T ss_pred HHHHHHHHHhhHHHHHHHHHhCCCCccccCCCCchHHHHHH
Confidence 44557888886 79999998755555655455543333333
No 84
>PRK14417 membrane protein; Provisional
Probab=22.31 E-value=1.5e+02 Score=25.26 Aligned_cols=59 Identities=19% Similarity=0.111 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHhChHHHHHhhcCchHHHHHHHHHHh------------cCchhhhHHhhcC
Q 025120 84 FVADSIGATIGAG-AAFLLGRTIGKPFVISKLKDYPQFRSVALAIQR------------SGFKIVLLLRLVP 142 (257)
Q Consensus 84 ~~~~~~g~~lG~~-~~y~igR~~g~~~~~~~~~~~~~~~~~~~~~~~------------~g~~~v~~~r~~P 142 (257)
.+...+|..+|+. .+|+++|.+.+..+++.=++|.-...+-|...+ +|...+.+++..+
T Consensus 6 ll~~i~aYLlGSIp~g~li~k~~~g~DIR~~GSGN~GaTNv~R~~Gkk~gilvll~D~lKG~laV~la~~l~ 77 (232)
T PRK14417 6 LIMIPAGYLVGAIPMAYLLSRWRRGIDIRRYGSGNVGASNVIKTAGKRLGLAVFVFDVSKGALMILLAGWLG 77 (232)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhCCCChhhcCCCCccHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444567788886 799999987555556544444433333332222 3566666666654
No 85
>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=21.85 E-value=5.9e+02 Score=22.86 Aligned_cols=22 Identities=14% Similarity=0.135 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCh
Q 025120 86 ADSIGATIGAGAAFLLGRTIGK 107 (257)
Q Consensus 86 ~~~~g~~lG~~~~y~igR~~g~ 107 (257)
++.++.+++....|+...+..|
T Consensus 65 ia~~~v~~~v~~~ff~shyiFr 86 (315)
T PF05992_consen 65 IAMIYVVLAVLNSFFVSHYIFR 86 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666677777766644
No 86
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=21.62 E-value=91 Score=23.49 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=13.2
Q ss_pred CCCCCeeEeecCCCCCCCC
Q 025120 239 DLNQPLIIKIEGNDDSHEK 257 (257)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~ 257 (257)
...+|.++....|||++||
T Consensus 129 ~d~~p~~~~~~~dd~e~ed 147 (150)
T PF06084_consen 129 NDNSPPIEPNGTDDEEDED 147 (150)
T ss_pred cCCCCcccCCCCCcccccc
Confidence 4456777777777777775
No 87
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=21.54 E-value=4.6e+02 Score=21.55 Aligned_cols=19 Identities=16% Similarity=0.259 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHhcCchhhh
Q 025120 118 PQFRSVALAIQRSGFKIVL 136 (257)
Q Consensus 118 ~~~~~~~~~~~~~g~~~v~ 136 (257)
+.++|+++++++|+...+.
T Consensus 180 ~~l~r~~~wl~~~~~~i~~ 198 (214)
T PF11139_consen 180 PWLERLRSWLRRHSRQILA 198 (214)
T ss_pred HHHHHHHHHHHHccHHHHH
Confidence 3567778888888765443
No 88
>PRK14399 membrane protein; Provisional
Probab=21.50 E-value=1.5e+02 Score=25.70 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHhChHHHHHhhcCch
Q 025120 83 GFVADSIGATIGAG-AAFLLGRTIGKPFVISKLKDYP 118 (257)
Q Consensus 83 ~~~~~~~g~~lG~~-~~y~igR~~g~~~~~~~~~~~~ 118 (257)
..+...+|-.+|+. .+|+++|.+.+..+++.-++|.
T Consensus 11 ~il~~iigYLiGSIp~g~ii~k~~~g~DIR~~GSGN~ 47 (258)
T PRK14399 11 IILASVFGYFLGSISWSIIIVKKVGNIDIRTVGSGNP 47 (258)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhCCCCccccCCCCC
Confidence 44455667888886 5799999875444454434443
No 89
>PRK14410 membrane protein; Provisional
Probab=21.45 E-value=1.5e+02 Score=25.40 Aligned_cols=41 Identities=7% Similarity=-0.058 Sum_probs=25.2
Q ss_pred HHHHHHHHHHH-HHHHHHHHhChHHHHHhhcCchHHHHHHHH
Q 025120 86 ADSIGATIGAG-AAFLLGRTIGKPFVISKLKDYPQFRSVALA 126 (257)
Q Consensus 86 ~~~~g~~lG~~-~~y~igR~~g~~~~~~~~~~~~~~~~~~~~ 126 (257)
+..+|-.+|+. .+|+++|.+.+..+++.-++|.-...+-|.
T Consensus 7 ~~l~~YLlGSIp~g~ii~k~~~g~DiR~~GSgN~GaTNv~R~ 48 (235)
T PRK14410 7 ILAVSYLIGSIPTSIIAGKLLKGIDIRNFGSGNAGGTNAFRV 48 (235)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCccccCCCCchHHHHHHH
Confidence 34557888888 699999987554555544444433333333
No 90
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=21.32 E-value=4.7e+02 Score=25.14 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=13.4
Q ss_pred CCCCCCCCCeeEeecCC
Q 025120 235 EQPVDLNQPLIIKIEGN 251 (257)
Q Consensus 235 ~~~~d~~~~~~~~~~~~ 251 (257)
.|..+++++++++..++
T Consensus 295 h~~c~l~s~lViPL~~~ 311 (557)
T COG3275 295 HPTCKLGSALVIPLRGK 311 (557)
T ss_pred CCCCCcCCceEeecccC
Confidence 56678999999887764
No 91
>PRK03072 heat shock protein HtpX; Provisional
Probab=20.70 E-value=3.1e+02 Score=24.04 Aligned_cols=31 Identities=19% Similarity=0.163 Sum_probs=17.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025120 74 GGYLFGLPVGFVADSIGATIGAGAAFLLGRTI 105 (257)
Q Consensus 74 ~G~~~g~~~~~~~~~~g~~lG~~~~y~igR~~ 105 (257)
.|+++| ..+.+.+.+-+.....+.|+.+.+.
T Consensus 24 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~ 54 (288)
T PRK03072 24 IGALFG-RTGLGIAVLIAVGMNAYVYWNSDKL 54 (288)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344554 2344444444555666777777665
No 92
>PRK14409 membrane protein; Provisional
Probab=20.33 E-value=1.5e+02 Score=24.71 Aligned_cols=57 Identities=11% Similarity=-0.059 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHH-HHHHHHHHhChHHHHHhhcCchHHHHHHHHHHh------------cCchhhhHHhhc
Q 025120 85 VADSIGATIGAG-AAFLLGRTIGKPFVISKLKDYPQFRSVALAIQR------------SGFKIVLLLRLV 141 (257)
Q Consensus 85 ~~~~~g~~lG~~-~~y~igR~~g~~~~~~~~~~~~~~~~~~~~~~~------------~g~~~v~~~r~~ 141 (257)
+...++-.+|+. .+|+++|......+++.=++|.-....-|.+.+ +|...+.++|..
T Consensus 4 ~~~i~~YllGsip~~~~i~k~~~g~DiR~~GSgN~GatNv~R~~G~~~g~~vll~D~lKG~lav~la~~~ 73 (205)
T PRK14409 4 IFALFSFISGSIPFGYWIALRFRGIDIRKHGSKNIGATNVGRVIGWKFGFIVLLLDALKGAVPVYLSASY 73 (205)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCCccccCCCCchHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567888886 789999987554555444444433333332211 356666666544
No 93
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=20.26 E-value=2.4e+02 Score=17.86 Aligned_cols=24 Identities=13% Similarity=0.300 Sum_probs=13.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025120 77 LFGLPVGFVADSIGATIGAGAAFLLGRTI 105 (257)
Q Consensus 77 ~~g~~~~~~~~~~g~~lG~~~~y~igR~~ 105 (257)
.+|+|...++..+. .++|.+|++.
T Consensus 26 ~~GF~~tl~i~~~~-----~iG~~iG~~~ 49 (51)
T PF10031_consen 26 TFGFWKTLFILLFA-----AIGYYIGKYL 49 (51)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHh
Confidence 36777655544332 3556666654
No 94
>COG2981 CysZ Uncharacterized protein involved in cysteine biosynthesis [Amino acid transport and metabolism]
Probab=20.22 E-value=5.6e+02 Score=22.04 Aligned_cols=14 Identities=36% Similarity=0.455 Sum_probs=8.7
Q ss_pred chhhhHHhhcCCCc
Q 025120 132 FKIVLLLRLVPLLP 145 (257)
Q Consensus 132 ~~~v~~~r~~P~~p 145 (257)
....++.-++|++.
T Consensus 146 ~ivll~L~fvP~~g 159 (250)
T COG2981 146 AIVLLLLLFVPGVG 159 (250)
T ss_pred HHHHHHHHHhcccC
Confidence 34456677777665
Done!