Query 025120
Match_columns 257
No_of_seqs 199 out of 1770
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 04:08:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025120.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025120hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p5n_A RIBU, riboflavin uptake 34.3 77 0.0026 24.7 5.7 30 68-97 48-77 (189)
2 4ezc_A UREA transporter 1; mem 33.3 1.2E+02 0.0041 26.7 7.3 68 34-102 37-106 (384)
3 2lbg_A Major prion protein; co 28.9 64 0.0022 16.8 2.8 20 86-105 6-25 (27)
4 2hfr_A Fowlicidin-3, cathelici 24.4 27 0.00093 17.9 0.9 18 139-156 2-19 (27)
5 4dve_A Biotin transporter BIOY 22.6 2.1E+02 0.0071 22.6 6.3 20 3-22 11-30 (198)
6 4ev6_A Magnesium transport pro 21.1 81 0.0028 26.9 3.9 29 161-190 280-308 (339)
7 2l9u_A Receptor tyrosine-prote 19.8 1.3E+02 0.0044 16.8 4.6 17 89-105 19-35 (40)
8 1k3k_A Functional anti-apoptot 10.5 5.4E+02 0.018 19.3 6.9 19 35-53 122-140 (158)
9 2ls4_A High affinity copper up 13.1 63 0.0022 16.8 0.0 15 88-102 6-20 (26)
10 2onk_C Molybdate/tungstate ABC 9.5 7E+02 0.024 19.9 6.9 25 80-104 78-102 (284)
No 1
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=34.32 E-value=77 Score=24.67 Aligned_cols=30 Identities=17% Similarity=0.208 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 025120 68 SVLTLGGGYLFGLPVGFVADSIGATIGAGA 97 (257)
Q Consensus 68 ~~~~~~~G~~~g~~~~~~~~~~g~~lG~~~ 97 (257)
++..+.+|+.+|+..|+++..+...+++..
T Consensus 48 ~i~i~l~~~~~Gp~~g~~~~~l~~ll~~l~ 77 (189)
T 3p5n_A 48 DVPSLLATFTFGPVAGIIVALVKNLLNYLF 77 (189)
T ss_dssp GHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 467778899999999999998888888766
No 2
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=33.35 E-value=1.2e+02 Score=26.74 Aligned_cols=68 Identities=21% Similarity=0.225 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHhhhcccCc--hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025120 34 LKDFLTWVDQDLGPWGPLVLAVAYIPLTILAVP--ASVLTLGGGYLFGLPVGFVADSIGATIGAGAAFLLG 102 (257)
Q Consensus 34 l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~iP--~~~~~~~~G~~~g~~~~~~~~~~g~~lG~~~~y~ig 102 (257)
+.++.+|++++ ...--++-.++--..+++..+ -+-+.+..|..++-++..+.+.+|+.+|...++++|
T Consensus 37 ~~~~~~~~~~~-~~~~~~i~~~LrG~gQV~f~~n~lsGlliLigl~i~sp~~al~allG~~vstltA~llg 106 (384)
T 4ezc_A 37 MKEFANWLKDK-PQALQFVDWVLRGISQVVFVSNPISGILILVGLLVQNPWCALNGCVGTVVSTLTALLLS 106 (384)
T ss_dssp CHHHHHHHHTS-CHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhcC-CcHHHHHHHHhcCceEEEecCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 57788899853 322222222333344455444 344555667777655566666666666666665554
No 3
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=28.90 E-value=64 Score=16.84 Aligned_cols=20 Identities=30% Similarity=0.660 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 025120 86 ADSIGATIGAGAAFLLGRTI 105 (257)
Q Consensus 86 ~~~~g~~lG~~~~y~igR~~ 105 (257)
....|.++|..-+|++|+-.
T Consensus 6 a~AAGaVvGglGgy~lg~~m 25 (27)
T 2lbg_A 6 AAAAGAVVGGLGGYMLGSAM 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHHh
Confidence 34668888988899888754
No 4
>2hfr_A Fowlicidin-3, cathelicidin; alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=24.41 E-value=27 Score=17.86 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=12.6
Q ss_pred hhcCCCchhHhhHhhhcc
Q 025120 139 RLVPLLPFNMLNYLLSVT 156 (257)
Q Consensus 139 r~~P~~p~~~~~~~aG~~ 156 (257)
||.|.+|-.+...++|+.
T Consensus 2 RF~P~vpvaintvaagin 19 (27)
T 2hfr_A 2 RFWPLVPVAINTVAAGIN 19 (27)
T ss_dssp CSCSSSSSHHHHHHHHHT
T ss_pred CccccCcceEEEeehhhh
Confidence 788988965666666654
No 5
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=22.64 E-value=2.1e+02 Score=22.61 Aligned_cols=20 Identities=10% Similarity=0.149 Sum_probs=8.3
Q ss_pred ccHHHHHHHHHHHHHHHHHH
Q 025120 3 FTWGSALRITLLILLVAAVV 22 (257)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ 22 (257)
|+-++-.|-.....+.++++
T Consensus 11 m~~~~k~r~l~~~alfaAli 30 (198)
T 4dve_A 11 MTNNQKVKTLTYSAFMTAFI 30 (198)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 6
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=21.06 E-value=81 Score=26.89 Aligned_cols=29 Identities=10% Similarity=-0.070 Sum_probs=17.3
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHhhhccchh
Q 025120 161 LEYMLASWIGMMPITLALVYVGTTLKDLSD 190 (257)
Q Consensus 161 ~~f~~~~~lg~~p~~~~~~~~G~~l~~~~~ 190 (257)
+.+...+++ -+|.+++..+.|..+..+..
T Consensus 280 k~LTiit~I-flP~T~IaGiyGMNf~~mPe 308 (339)
T 4ev6_A 280 KILTMVTTI-FAVPMWITGIYGMNFSYLPL 308 (339)
T ss_dssp HHHHHHHHH-SSHHHHHHHHTTCCCSCCTT
T ss_pred HHHHHHHHH-HHHHHHHHhhccCcCCCCCC
Confidence 334444444 36777777777877765544
No 7
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=19.80 E-value=1.3e+02 Score=16.75 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 025120 89 IGATIGAGAAFLLGRTI 105 (257)
Q Consensus 89 ~g~~lG~~~~y~igR~~ 105 (257)
+-..+|+...||-||+-
T Consensus 19 if~~lg~tflywrgrrh 35 (40)
T 2l9u_A 19 IFMMLGGTFLYWRGRRH 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhCceeEEEccccc
Confidence 34578999999999864
No 8
>1k3k_A Functional anti-apoptotic factor VBCL-2 homolog; solution structure, apoptosis; NMR {Human herpesvirus 8} SCOP: f.1.4.1
Probab=10.47 E-value=5.4e+02 Score=19.27 Aligned_cols=19 Identities=16% Similarity=-0.003 Sum_probs=12.0
Q ss_pred HHHHHHHHhcCCChHHHHH
Q 025120 35 KDFLTWVDQDLGPWGPLVL 53 (257)
Q Consensus 35 ~~l~~~~~~~~g~~~~~~~ 53 (257)
+.+.+|+.++-|+-+..-|
T Consensus 122 ~~l~~WI~~~GGW~gf~~~ 140 (158)
T 1k3k_A 122 AIGPQWFRARGGWRGLKAY 140 (158)
T ss_dssp HHCHHHHHHTCSSHHHHHH
T ss_pred hhhhhHHHHcCCHHHHHHH
Confidence 4567888866666554433
No 9
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=13.10 E-value=63 Score=16.81 Aligned_cols=15 Identities=33% Similarity=0.603 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHH
Q 025120 88 SIGATIGAGAAFLLG 102 (257)
Q Consensus 88 ~~g~~lG~~~~y~ig 102 (257)
+++.++|+.++|++-
T Consensus 6 ~iavvlGa~~Gyf~F 20 (26)
T 2ls4_A 6 CIAVAAGAGTGYFLF 20 (26)
Confidence 456677777777764
No 10
>2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: f.58.1.1
Probab=9.51 E-value=7e+02 Score=19.92 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025120 80 LPVGFVADSIGATIGAGAAFLLGRT 104 (257)
Q Consensus 80 ~~~~~~~~~~g~~lG~~~~y~igR~ 104 (257)
...+.....++..+|-.++|.++|+
T Consensus 78 l~~~~~~~~l~~~lg~~~a~~l~~~ 102 (284)
T 2onk_C 78 YYAALISTLIAVIFGTPLAYILARK 102 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4445555566667777777777764
Done!