Query 025120
Match_columns 257
No_of_seqs 199 out of 1770
Neff 8.3
Searched_HMMs 13730
Date Mon Mar 25 04:09:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025120.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025120hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iuba2 f.17.3.1 (A:286-349) M 13.8 32 0.0023 20.2 1.2 14 172-185 17-30 (64)
2 d1kqfb2 f.23.22.1 (B:246-290) 11.3 1.1E+02 0.0081 16.7 2.9 23 5-27 8-30 (45)
3 d2vv5a3 f.34.1.1 (A:27-112) Me 9.6 1.9E+02 0.014 17.3 6.1 16 153-168 60-75 (86)
4 d1k3ka_ f.1.4.1 (A:) Bcl-2 hom 7.6 3.3E+02 0.024 18.4 6.3 18 36-53 123-140 (146)
5 d2jm6b1 f.1.4.1 (B:147-308) EA 5.8 4.1E+02 0.03 17.9 6.1 13 4-16 95-107 (162)
6 d2r6gg1 f.58.1.1 (G:7-296) Mal 5.6 4.1E+02 0.03 19.3 5.3 98 79-176 82-196 (290)
7 d2osoa1 d.278.1.3 (A:5-156) Hy 5.5 1.7E+02 0.013 19.9 2.6 40 90-135 40-79 (152)
8 d1t33a2 a.121.1.1 (A:89-220) P 5.0 2.5E+02 0.018 18.6 3.1 39 88-130 80-122 (132)
9 d2ckca1 d.76.2.1 (A:2563-2622) 4.4 89 0.0064 18.2 0.1 26 117-142 23-48 (60)
10 d1xmea1 f.24.1.1 (A:14-562) Ba 4.2 1.8E+02 0.013 24.6 2.1 18 166-183 414-431 (549)
No 1
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=13.78 E-value=32 Score=20.23 Aligned_cols=14 Identities=29% Similarity=0.491 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHhhh
Q 025120 172 MPITLALVYVGTTL 185 (257)
Q Consensus 172 ~p~~~~~~~~G~~l 185 (257)
+|-+++....|..+
T Consensus 17 lP~t~i~gifGMN~ 30 (64)
T d2iuba2 17 MPLTFIAGIYGMNF 30 (64)
T ss_dssp HHHHHHTTSCC---
T ss_pred HHHHHHHhhhccCC
Confidence 34444444444443
No 2
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=11.31 E-value=1.1e+02 Score=16.69 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025120 5 WGSALRITLLILLVAAVVTACFT 27 (257)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~ 27 (257)
||-+.|-+..+...++++..+++
T Consensus 8 WKgv~Kpl~~~~~~~~~~~~~fH 30 (45)
T d1kqfb2 8 WKGALKPLAAAGFIATFAGLIFH 30 (45)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHh
Confidence 77777777666666655555443
No 3
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=9.65 E-value=1.9e+02 Score=17.25 Aligned_cols=16 Identities=13% Similarity=-0.083 Sum_probs=8.0
Q ss_pred hhcccCChhhHHHHHH
Q 025120 153 LSVTPVPLLEYMLASW 168 (257)
Q Consensus 153 aG~~~~~~~~f~~~~~ 168 (257)
.+..+++...++.+.-
T Consensus 60 L~~~Gi~~t~l~a~~G 75 (86)
T d2vv5a3 60 LGRVGVQTASVIAVLG 75 (86)
T ss_dssp HHTTTCCSTTHHHHHH
T ss_pred HHHhCCCHHHHHHHHH
Confidence 3445555555554443
No 4
>d1k3ka_ f.1.4.1 (A:) Bcl-2 homolog {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
Probab=7.60 E-value=3.3e+02 Score=18.42 Aligned_cols=18 Identities=17% Similarity=0.005 Sum_probs=11.2
Q ss_pred HHHHHHHhcCCChHHHHH
Q 025120 36 DFLTWVDQDLGPWGPLVL 53 (257)
Q Consensus 36 ~l~~~~~~~~g~~~~~~~ 53 (257)
.+.+|+.++-|+-|..-|
T Consensus 123 ~~~~WI~~~GGW~gf~~f 140 (146)
T d1k3ka_ 123 IGPQWFRARGGWRGLKAY 140 (146)
T ss_dssp HCHHHHHHTCSSHHHHHH
T ss_pred hHHHHHHHcCChHHHHHH
Confidence 356899976666554433
No 5
>d2jm6b1 f.1.4.1 (B:147-308) EAT/MCL-1 (Myeloid cell leukemia sequence 1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.81 E-value=4.1e+02 Score=17.88 Aligned_cols=13 Identities=15% Similarity=0.470 Sum_probs=7.2
Q ss_pred cHHHHHHHHHHHH
Q 025120 4 TWGSALRITLLIL 16 (257)
Q Consensus 4 ~~~~~~~~~~~~~ 16 (257)
+|.|+.-+..+..
T Consensus 95 NWGRIval~~F~~ 107 (162)
T d2jm6b1 95 NWGRIVTLISFGA 107 (162)
T ss_dssp CHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH
Confidence 6777665444443
No 6
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=5.60 E-value=4.1e+02 Score=19.32 Aligned_cols=98 Identities=10% Similarity=0.040 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh--ChHHHHHhh------cCc-------hHHHHHHHHHHh--cCchhhhHHhhc
Q 025120 79 GLPVGFVADSIGATIGAGAAFLLGRTI--GKPFVISKL------KDY-------PQFRSVALAIQR--SGFKIVLLLRLV 141 (257)
Q Consensus 79 g~~~~~~~~~~g~~lG~~~~y~igR~~--g~~~~~~~~------~~~-------~~~~~~~~~~~~--~g~~~v~~~r~~ 141 (257)
....+.....++..+|-..+|.+.|.- +++...... ... ..+.+....... ++.....+.-..
T Consensus 82 Sl~~a~~~~~~~~~ig~~~a~~l~r~~~~~~~~~~~~~~~~~~~P~~v~~i~~~~~~~~~g~~~~~~~~~~~~~ii~~~~ 161 (290)
T d2r6gg1 82 SVKVAGISAIGIVALSTTCAYAFARMRFPGKATLLKGMLIFQMFPAVLSLVALYALFDRLGEYIPFIGLNTHGGVIFAYL 161 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCTTSHHHHHHHHHTTSSCSSSHHHHHHHHHHHHHHHSTTSSTTSHHHHHHHHT
T ss_pred hHHhhhhhhhhhhhHHHHHHHHHHHhhhhhHHHHHHHhhccccccchhheeehhhcccccCCcccccccCchhhhhhhcc
Confidence 355667777788888999999998863 333333211 000 011111111111 122222333333
Q ss_pred CCCchhHhhHhhhcccCChhhHHHHHHHhHHHHHH
Q 025120 142 PLLPFNMLNYLLSVTPVPLLEYMLASWIGMMPITL 176 (257)
Q Consensus 142 P~~p~~~~~~~aG~~~~~~~~f~~~~~lg~~p~~~ 176 (257)
-..|+.+..+.++..++|...+=.+...|+-+|..
T Consensus 162 ~~~pf~~~~~~~~l~~i~~~l~EAA~~~GAs~~~~ 196 (290)
T d2r6gg1 162 GGIALHVWTIKGYFETIDSSLEEAAALDGATPWQA 196 (290)
T ss_dssp TTTHHHHHHHHHHHTTSCTHHHHHHHHTTCCHHHH
T ss_pred cceeeeeeccchhhhcchhhhhhhHhhcCCCHHHH
Confidence 45889999999999999988877777777655543
No 7
>d2osoa1 d.278.1.3 (A:5-156) Hypothetical protein MJ1460 {Methanococcus jannaschii [TaxId: 2190]}
Probab=5.52 E-value=1.7e+02 Score=19.92 Aligned_cols=40 Identities=10% Similarity=0.149 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHhChHHHHHhhcCchHHHHHHHHHHhcCchhh
Q 025120 90 GATIGAGAAFLLGRTIGKPFVISKLKDYPQFRSVALAIQRSGFKIV 135 (257)
Q Consensus 90 g~~lG~~~~y~igR~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~v 135 (257)
+-.-.+.+-|+.|+..|+..- .+ ..+.+.+.++++|+..+
T Consensus 40 ~~~~~~~iLY~aGk~lGr~~~----~k--~~eel~~ff~~~g~G~L 79 (152)
T d2osoa1 40 KELGSETSLYEIGEEFGKMLS----PK--NIEELKKIFKLMNFGDL 79 (152)
T ss_dssp C--CCCCCHHHHHHHHHHHHC----CS--SHHHHHHHHHHHTCCEE
T ss_pred cccchHHHHHHHHHHHHHHHH----HH--HHHHHHHHHHHcCCceE
Confidence 333445678999998887542 22 45677778888877544
No 8
>d1t33a2 a.121.1.1 (A:89-220) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=5.03 E-value=2.5e+02 Score=18.61 Aligned_cols=39 Identities=18% Similarity=0.235 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHhChHHHHHhhc----CchHHHHHHHHHHhc
Q 025120 88 SIGATIGAGAAFLLGRTIGKPFVISKLK----DYPQFRSVALAIQRS 130 (257)
Q Consensus 88 ~~g~~lG~~~~y~igR~~g~~~~~~~~~----~~~~~~~~~~~~~~~ 130 (257)
+.-+++|.++.|.++|.. +.+.++ ..+..+++.+.+.++
T Consensus 80 ~~~sivGq~l~f~var~~----~l~~lgw~~~~~~~~~~i~~~i~~~ 122 (132)
T d1t33a2 80 HTHALLGEVLAFRLGKET----ILLRTGWPQFDEEKAELIYQTVTCH 122 (132)
T ss_dssp HHHHHHHHHHHHHHTHHH----HHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHhcCCCcCCHHHHHHHHHHHHHH
Confidence 334678999999988865 222332 124566666666554
No 9
>d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.36 E-value=89 Score=18.24 Aligned_cols=26 Identities=15% Similarity=0.112 Sum_probs=21.2
Q ss_pred chHHHHHHHHHHhcCchhhhHHhhcC
Q 025120 117 YPQFRSVALAIQRSGFKIVLLLRLVP 142 (257)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~v~~~r~~P 142 (257)
-+..+.+.+|+++|..+.+-.-+++|
T Consensus 23 AP~~~~L~~WL~~hP~y~Vd~p~~~p 48 (60)
T d2ckca1 23 APKNKDLVEWLKLHPTYTVDMPSYVP 48 (60)
T ss_dssp SCBHHHHHHHHHHCTTEEESCCCCCC
T ss_pred CcCHHHHHHHHHHCCCcEeecCccCc
Confidence 36788999999999988887777766
No 10
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=4.23 E-value=1.8e+02 Score=24.63 Aligned_cols=18 Identities=28% Similarity=0.582 Sum_probs=9.3
Q ss_pred HHHHhHHHHHHHHHHHHh
Q 025120 166 ASWIGMMPITLALVYVGT 183 (257)
Q Consensus 166 ~~~lg~~p~~~~~~~~G~ 183 (257)
..++|.........+.|-
T Consensus 414 l~~iG~~~~~~~m~~~Gl 431 (549)
T d1xmea1 414 LWFLGMMIMAVGLHWAGL 431 (549)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 334555555555555553
Done!