BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025121
(257 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FJ2|A Chain A, Crystal Structure Of The Human Acyl Protein Thioesterase 1
At 1.5 A Resolution
pdb|1FJ2|B Chain B, Crystal Structure Of The Human Acyl Protein Thioesterase 1
At 1.5 A Resolution
Length = 232
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 118/232 (50%), Gaps = 25/232 (10%)
Query: 26 VVRPKGKHQATIVWLHGLGDNGSSWSQLLESLPLPNIKWICPTAPTRPVAILGGFPCTAW 85
+V K A +++LHGLGD G W++ + +IK+ICP AP RPV + +W
Sbjct: 15 IVPAARKATAAVIFLHGLGDTGHGWAEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSW 74
Query: 86 FDVGELSDDGPEDWEGLDASAAHIANLLSTE-----PADVKVGIGGFSMGAAVALYSATC 140
FD+ LS D ED G+ +A +I L+ E P++ ++ +GGFS G A++LY+A
Sbjct: 75 FDIIGLSPDSQEDESGIKQAAENIKALIDQEVKNGIPSN-RIILGGFSQGGALSLYTA-- 131
Query: 141 CALGRYGNGIPYYVNLRAVVGLSGWLPGSRNLRNKI-EGSHEAARRAASLPILLTHGLCD 199
+ L V LS WLP LR +G A R S IL HG CD
Sbjct: 132 ---------LTTQQKLAGVTALSCWLP----LRASFPQGPIGGANRDIS--ILQCHGDCD 176
Query: 200 DVVPYKYGEKSANCL-SISGFRHLTFKSFEGLGHYTVPKEMDEVCNWLTARL 250
+VP +G + L ++ ++TFK++EG+ H + +EM +V ++ L
Sbjct: 177 PLVPLMFGSLTVEKLKTLVNPANVTFKTYEGMMHSSCQQEMMDVKQFIDKLL 228
>pdb|4F21|A Chain A, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|B Chain B, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|C Chain C, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|D Chain D, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|E Chain E, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|F Chain F, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|G Chain G, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|H Chain H, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
Length = 246
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 112/236 (47%), Gaps = 27/236 (11%)
Query: 26 VVRPKGKHQATIVWLHGLGDNGSSWSQLLE--SLPLPNIKWICPTAPTRPVAILGGFPCT 83
++ P + + ++WLHGLG +G + ++ + L I++I P A PV I G
Sbjct: 29 LMEPAKQARFCVIWLHGLGADGHDFVDIVNYFDVSLDEIRFIFPHADIIPVTINMGMQMR 88
Query: 84 AWFDVGELSDDGPE---DWEGLDASAAHIANLLSTEP----ADVKVGIGGFSMGAAVALY 136
AW+D+ L + D EG+++S A + L+ ++ A + + GFS G +A Y
Sbjct: 89 AWYDIKSLDANSLNRVVDVEGINSSIAKVNKLIDSQVNQGIASENIILAGFSQGGIIATY 148
Query: 137 SATCCALGRYGNGIPYYVNLRAVVGLSGWLPGSRNLRNKIEGSHEAARRAASLPILLTHG 196
+A I L ++ LS +LP N + KI ++ LPIL+ HG
Sbjct: 149 TA-----------ITSQRKLGGIMALSTYLPAWDNFKGKITSINKG------LPILVCHG 191
Query: 197 LCDDVVPYKYGEKSANCLSISGFRHLTFKSFEGLGHYTVPKEMDEVCNWLTARLGL 252
D V+P G ++ L +SGF + +K + G+ H +E+ ++ N++ +
Sbjct: 192 TDDQVLPEVLGHDLSDKLKVSGFAN-EYKHYVGMQHSVCMEEIKDISNFIAKTFKI 246
>pdb|1AUO|A Chain A, Carboxylesterase From Pseudomonas Fluorescens
pdb|1AUO|B Chain B, Carboxylesterase From Pseudomonas Fluorescens
pdb|1AUR|A Chain A, Pmsf-Inhibited Carboxylesterase From Pseudomonas
Fluorescens
pdb|1AUR|B Chain B, Pmsf-Inhibited Carboxylesterase From Pseudomonas
Fluorescens
Length = 218
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 111/232 (47%), Gaps = 25/232 (10%)
Query: 26 VVRPKGKHQATIVWLHGLGDNGSSWSQLLESLP--LPNIKWICPTAPTRPVAILGGFPCT 83
+++P A ++WLHGLG + + + E+L L +++ P APTRPV I GG+
Sbjct: 6 ILQPAKPADACVIWLHGLGADRYDFMPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMP 65
Query: 84 AWFDVGELSDDGPEDWEGLDASAAHIANLLSTEPAD----VKVGIGGFSMGAAVALYSAT 139
+W+D+ +S E L+ SA + +L+ + ++ + GFS G AV ++A
Sbjct: 66 SWYDIKAMSPARSISLEELEVSAKMVTDLIEAQKRTGIDASRIFLAGFSQGGAVVFHTAF 125
Query: 140 CCALGRYGNGIPYYVNLRAVVGLSGWLPGSRNLRNKIEGSHEAARRAASLPILLTHGLCD 199
G G V+ LS + P +++E S R +P L HG D
Sbjct: 126 INWQGPLGG----------VIALSTYAP---TFGDELELSASQQR----IPALCLHGQYD 168
Query: 200 DVVPYKYGEKSANCLSISGFRHLTFKSFEGLGHYTVPKEMDEVCNWLTARLG 251
DVV G + L G +T++ + +GH +P+E+ ++ WL ARLG
Sbjct: 169 DVVQNAMGRSAFEHLKSRGVT-VTWQEYP-MGHEVLPQEIHDIGAWLAARLG 218
>pdb|3U0V|A Chain A, Crystal Structure Analysis Of Human Lyplal1
Length = 239
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 114/236 (48%), Gaps = 30/236 (12%)
Query: 26 VVRPKGKHQATIVWLHGLGDNGS---SWSQ--LLESLPLPNIKWICPTAPTRPVAILGGF 80
+V P G+H A++++LHG GD+G W + L + L +IK I PTAP R + G
Sbjct: 15 IVSPAGRHSASLIFLHGSGDSGQGLRMWIKQVLNQDLTFQHIKIIYPTAPPRSYTPMKGG 74
Query: 81 PCTAWFDVGELSDDGPEDWEGLDASAAHIANLLSTEP----ADVKVGIGGFSMGAAVALY 136
WFD ++++D PE E +D + +L+ E ++ IGGFSMG +A++
Sbjct: 75 ISNVWFDRFKITNDCPEHLESIDVMCQVLTDLIDEEVKSGIKKNRILIGGFSMGGCMAMH 134
Query: 137 SATCCALGRYGNGIPYYVNLRAVVGLSGWLPGSRNLRNKIEGSHEAARRA-ASLPILLT- 194
A Y N + ++ V LS +L NK ++A +++ LP L
Sbjct: 135 LA-------YRN----HQDVAGVFALSSFL-------NKASAVYQALQKSNGVLPELFQC 176
Query: 195 HGLCDDVVPYKYGEKSANCLSISGFRHLTFKSFEGLGHYTVPKEMDEVCNWLTARL 250
HG D++V + + E++ + L G F SF + H E+D + W+ +L
Sbjct: 177 HGTADELVLHSWAEETNSMLKSLGVT-TKFHSFPNVYHELSKTELDILKLWILTKL 231
>pdb|3CN7|A Chain A, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|B Chain B, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|C Chain C, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|D Chain D, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN9|A Chain A, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Orthorhombic Crystal
Form
pdb|3CN9|B Chain B, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Orthorhombic Crystal
Form
Length = 226
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 105/222 (47%), Gaps = 26/222 (11%)
Query: 35 ATIVWLHGLGDNGSSWSQLLESLP--LPNIKWICPTAPTRPVAILGGFPCTAWFDVGELS 92
A I+WLHGLG + + + + E+L LP+ ++I P AP++ V + GG+ +W+D+ S
Sbjct: 25 ACIIWLHGLGADRTDFKPVAEALQMVLPSTRFILPQAPSQAVTVNGGWVMPSWYDILAFS 84
Query: 93 DDGPEDWEGLDASAAHIANLLSTEPAD----VKVGIGGFSMGAAVALYSATCCALGRYGN 148
D + L+ASA + L+ + A ++ + GFS G AV L++ A RY
Sbjct: 85 PARAIDEDQLNASADQVIALIDEQRAKGIAAERIILAGFSQGGAVVLHT----AFRRYAQ 140
Query: 149 GIPYYVNLRAVVGLSGWLPGSRNLRNKIEGSHEAARRAASLPILLTHGLCDDVVPYKYGE 208
L V+ LS + P +L R +P+L HG DDVV G
Sbjct: 141 ------PLGGVLALSTYAPTFDDLALD--------ERHKRIPVLHLHGSQDDVVDPALGR 186
Query: 209 KSANCLSISGFRHLTFKSFEGLGHYTVPKEMDEVCNWLTARL 250
+ + L G + + + +GH +E+ ++ WL RL
Sbjct: 187 AAHDALQAQGVE-VGWHDYP-MGHEVSLEEIHDIGAWLRKRL 226
>pdb|4FTW|A Chain A, Crystal Structure Of A Carboxyl Esterase N110cL145H AT 2.3
ANGSTROM Resolution
Length = 285
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 90/242 (37%), Gaps = 34/242 (14%)
Query: 17 RTFEFGRTHVVRPKGKHQATIVWLHGLGDNGSSWSQLLESLP--LPNIKWICPTAPTRPV 74
R FGR G+ + +V+LHG G +G+ L E L LP ++ P AP
Sbjct: 51 RKLTFGRRGAA--PGEATSLVVFLHGYGADGADLLGLAEPLAPHLPGTAFVAPDAPEPCR 108
Query: 75 AILGGFPCTAWFDV------GELSDDGPEDWEGLDASAAHIANLLSTEPADVKVGIGGFS 128
A GF WF + E + D A H L + + GFS
Sbjct: 109 ACGFGF---QWFPIPWLDGSSETAAAEGMAAAARDLDAFHDERLAEEGLPPEALALVGFS 165
Query: 129 MGAAVALYSATCCALGRYGNGIPYYVNLRAVVGLSGWLPGSRNLRNKIEGSHEAARRAAS 188
G +AL+ A A + +VG SG L L E AR +
Sbjct: 166 QGTMMALHVAPRRA-----------EEIAGIVGFSGRLLAPERLA-------EEAR--SK 205
Query: 189 LPILLTHGLCDDVVPYKYGEKSANCLSISGFRHLTFKSFEGLGHYTVPKEMDEVCNWLTA 248
P+LL HG D VVP+ + L+ +GF +G GH P + +L
Sbjct: 206 PPVLLVHGDADPVVPFADMSLAGEALAEAGFTTYG-HVMKGTGHGIAPDGLSVALAFLKE 264
Query: 249 RL 250
RL
Sbjct: 265 RL 266
>pdb|4FHZ|A Chain A, Crystal Structure Of A Carboxyl Esterase At 2.0 Angstrom
Resolution
Length = 285
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 98/251 (39%), Gaps = 52/251 (20%)
Query: 17 RTFEFGRTHVVRPKGKHQATIVWLHGLGDNGSSWSQLLESLP--LPNIKWICPTAPTRPV 74
R FGR G+ + +V+LHG G +G+ L E L LP ++ P AP
Sbjct: 51 RKLTFGRRGAA--PGEATSLVVFLHGYGADGADLLGLAEPLAPHLPGTAFVAPDAPE--- 105
Query: 75 AILGGFPCTA------WFDVGELSDDGPEDWEGLDASAAHIANL-------LSTE--PAD 119
PC A WF + L DG + + AA +L L+ E P +
Sbjct: 106 ------PCRANGFGFQWFPIPWL--DGSSETAAAEGMAAAARDLDAFLDERLAEEGLPPE 157
Query: 120 VKVGIGGFSMGAAVALYSATCCALGRYGNGIPYYVNLRAVVGLSGWLPGSRNLRNKIEGS 179
+ + GFS G +AL+ A A + +VG SG L L
Sbjct: 158 A-LALVGFSQGTMMALHVAPRRA-----------EEIAGIVGFSGRLLAPERL------- 198
Query: 180 HEAARRAASLPILLTHGLCDDVVPYKYGEKSANCLSISGFRHLTFKSFEGLGHYTVPKEM 239
E AR + P+LL HG D VVP+ + L+ +GF +G GH P +
Sbjct: 199 AEEAR--SKPPVLLVHGDADPVVPFADMSLAGEALAEAGFTTYG-HVMKGTGHGIAPDGL 255
Query: 240 DEVCNWLTARL 250
+L RL
Sbjct: 256 SVALAFLKERL 266
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 188 SLPILLTHGLCDDVVPY-KYGEKSANCLSISGFRHLTFKSFEGLGH 232
+P+L+ HG D VVPY KSA L+ + T KS+EGL H
Sbjct: 215 DVPVLVAHGTDDQVVPYADAAPKSAELLA-----NATLKSYEGLPH 255
>pdb|2J5L|A Chain A, Structure Of A Plasmodium Falciparum Apical Membrane
Antigen 1-Fab F8.12.19 Complex
Length = 581
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 29 PKGKHQATIVWLHGLGDNGSSWSQLLESLPLPNIK---------WICPTAPTRPVAILGG 79
P G +A HG G N ++++ + + N+K +I TA + P+ +
Sbjct: 349 PTGAFKADRYKSHGKGYNWGNYNRETQKCEIFNVKPTCLINNSSYIATTALSHPIEVEHN 408
Query: 80 FPCTAWFD 87
FPC+ + D
Sbjct: 409 FPCSLYKD 416
>pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1
pdb|2ZJ5|A Chain A, Archaeal Dna Helicase Hjm Complexed With Adp In Form 1
pdb|2ZJ8|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 2
pdb|2ZJA|A Chain A, Archaeal Dna Helicase Hjm Complexed With Amppcp In Form 2
Length = 720
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 13/94 (13%)
Query: 155 NLRAVVGLSGWLPGSRNLRNKIEGSHEAARRAASLPILLTHGLCDDVVPYK----YGEKS 210
++ +V + WL S K+ G++E +L + + +G+ ++++P G +
Sbjct: 599 DIYRIVETAEWLVYSLKEIAKVLGAYEIVDYLETLRVRVKYGIREELIPLMQLPLVGRRR 658
Query: 211 ANCLSISGFRHL---------TFKSFEGLGHYTV 235
A L SGFR + EG+G TV
Sbjct: 659 ARALYNSGFRSIEDISQARPEELLKIEGIGVKTV 692
>pdb|3W06|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dwarf14 Like
(atd14l)
Length = 272
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 23 RTHVVRPKGKHQATIVWLHGLGDNGSSWSQLLESL 57
H V+ G +ATIV HG G + S W L+ L
Sbjct: 8 EAHNVKVIGSGEATIVLGHGFGTDQSVWKHLVPHL 42
>pdb|4HRX|A Chain A, Crystal Structure Of Kai2
pdb|4HRY|A Chain A, The Structure Of Arabidopsis Thaliana Kai2
pdb|4HTA|A Chain A, The Structure Of The Karrikin Insensitive (kai2) Protein
In Arabidopsis Thaliana
Length = 288
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 23 RTHVVRPKGKHQATIVWLHGLGDNGSSWSQLLESL 57
H V+ G +ATIV HG G + S W L+ L
Sbjct: 24 EAHNVKVIGSGEATIVLGHGFGTDQSVWKHLVPHL 58
>pdb|4IH1|A Chain A, Crystal Structure Of Karrikin Insensitive 2 (kai2) From
Arabidopsis Thaliana
Length = 270
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 23 RTHVVRPKGKHQATIVWLHGLGDNGSSWSQLLESL 57
H V+ G +ATIV HG G + S W L+ L
Sbjct: 6 EAHNVKVIGSGEATIVLGHGFGTDQSVWKHLVPHL 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,575,901
Number of Sequences: 62578
Number of extensions: 370166
Number of successful extensions: 1007
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 983
Number of HSP's gapped (non-prelim): 16
length of query: 257
length of database: 14,973,337
effective HSP length: 97
effective length of query: 160
effective length of database: 8,903,271
effective search space: 1424523360
effective search space used: 1424523360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)