Query 025122
Match_columns 257
No_of_seqs 166 out of 735
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 04:11:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025122.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025122hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ati_A MITF, microphthalmia-as 99.7 2E-17 7E-22 133.7 7.2 71 173-243 16-89 (118)
2 1am9_A Srebp-1A, protein (ster 99.7 2.2E-17 7.6E-22 125.6 4.0 59 184-242 6-64 (82)
3 4h10_B Circadian locomoter out 99.6 2.5E-16 8.6E-21 118.4 4.4 58 184-241 8-65 (71)
4 1an4_A Protein (upstream stimu 99.6 4.9E-16 1.7E-20 112.7 3.0 55 184-238 5-64 (65)
5 1a0a_A BHLH, protein (phosphat 99.6 2.5E-16 8.4E-21 115.2 1.1 54 185-238 3-62 (63)
6 4h10_A ARYL hydrocarbon recept 99.5 1E-15 3.4E-20 115.3 0.8 55 181-235 6-63 (73)
7 1nkp_B MAX protein, MYC proto- 99.5 7.2E-14 2.5E-18 105.6 6.3 56 186-242 4-61 (83)
8 1hlo_A Protein (transcription 99.5 7.3E-14 2.5E-18 105.2 6.0 57 186-242 14-71 (80)
9 1nkp_A C-MYC, MYC proto-oncoge 99.4 1.6E-13 5.3E-18 106.0 6.2 56 187-242 9-66 (88)
10 3u5v_A Protein MAX, transcript 99.4 1.2E-13 4.1E-18 104.5 4.9 57 186-242 7-66 (76)
11 1nlw_A MAD protein, MAX dimeri 99.3 9E-12 3.1E-16 94.8 6.9 56 187-242 4-61 (80)
12 4f3l_A Mclock, circadian locom 99.1 6.2E-11 2.1E-15 107.5 5.9 56 182-237 10-65 (361)
13 1mdy_A Protein (MYOD BHLH doma 99.1 3.5E-11 1.2E-15 89.4 2.7 52 186-237 14-66 (68)
14 4f3l_B BMAL1B; BHLH, PAS, circ 99.0 1.4E-10 4.9E-15 106.6 3.0 54 182-236 11-68 (387)
15 2ql2_B Neurod1, neurogenic dif 99.0 7.1E-10 2.4E-14 80.4 5.6 52 187-238 5-58 (60)
16 4ath_A MITF, microphthalmia-as 98.8 3.1E-09 1.1E-13 82.2 5.7 48 195-242 3-53 (83)
17 2lfh_A DNA-binding protein inh 98.5 3.8E-08 1.3E-12 73.6 1.6 46 190-235 20-67 (68)
18 4aya_A DNA-binding protein inh 98.0 1.4E-05 4.9E-10 63.2 6.7 50 192-241 33-84 (97)
19 1p3q_Q VPS9P, vacuolar protein 55.4 16 0.00053 25.9 4.2 26 190-215 3-28 (54)
20 3muj_A Transcription factor CO 46.4 25 0.00085 29.2 4.7 36 198-233 95-133 (138)
21 3p8c_D Wiskott-aldrich syndrom 40.1 6 0.0002 36.2 0.0 18 22-39 196-213 (279)
22 1f1f_A Cytochrome C6; heme, pr 36.1 70 0.0024 21.6 5.1 40 196-236 48-87 (89)
23 3ng9_A Capsid protein; beta ba 34.4 13 0.00044 38.2 1.4 7 36-42 293-299 (736)
24 3ntt_A Capsid protein; gene th 34.1 12 0.00042 38.3 1.1 11 36-47 283-293 (724)
25 3ph2_B Cytochrome C6; photosyn 28.9 1.1E+02 0.0038 20.4 5.1 38 198-236 47-84 (86)
26 1cyi_A Cytochrome C6, cytochro 28.3 1.1E+02 0.0038 20.8 5.1 39 196-235 46-84 (90)
27 1m2x_A Class B carbapenemase B 27.6 32 0.0011 27.7 2.4 32 207-239 190-221 (223)
28 1gdv_A Cytochrome C6; RED ALGA 27.3 1.2E+02 0.0042 20.1 5.1 37 198-235 46-82 (85)
29 1c6r_A Cytochrome C6; electron 26.2 1.2E+02 0.0041 20.5 5.0 39 196-235 47-85 (89)
30 1a7t_A Metallo-beta-lactamase; 24.1 53 0.0018 26.6 3.1 32 207-239 200-231 (232)
31 2ke4_A CDC42-interacting prote 23.0 1.2E+02 0.0041 23.4 4.8 26 217-242 58-83 (98)
32 2wt7_A Proto-oncogene protein 22.9 1.6E+02 0.0054 20.5 5.0 12 231-242 47-58 (63)
33 2jqq_A Conserved oligomeric go 22.1 56 0.0019 28.7 3.0 45 195-241 52-96 (204)
34 2aze_A Transcription factor DP 21.0 48 0.0016 28.0 2.3 21 190-210 11-32 (155)
35 1ls9_A Cytochrome C6; omega lo 20.8 1.8E+02 0.006 19.8 5.0 39 196-235 49-87 (91)
36 1hwt_C Protein (heme activator 20.2 62 0.0021 22.5 2.4 18 227-244 57-74 (81)
No 1
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.70 E-value=2e-17 Score=133.72 Aligned_cols=71 Identities=30% Similarity=0.462 Sum_probs=51.6
Q ss_pred CCccccccccCCCCCCcHHHHHHHHHHHHHHHHHhccCCCCCC---CCChhhHHHHHHHHHHHHHHHHHHHhhc
Q 025122 173 VPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQDLVPNMDK---QTNTADMLEEAVEYVKFLQKQIEVLHFL 243 (257)
Q Consensus 173 vp~k~raKRg~at~~HsiaERrRRerIneri~~Lr~LVP~~~K---kmDKAsIL~eAI~YIK~LQ~QVq~Le~l 243 (257)
++++..+|+++++.+|+++||+||++||++|.+|++|||++.+ +++|++||++||+||++||.+++.|+..
T Consensus 16 ~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 16 SEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888999999999999999999999999998853 4899999999999999999999999854
No 2
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.67 E-value=2.2e-17 Score=125.62 Aligned_cols=59 Identities=29% Similarity=0.500 Sum_probs=54.5
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHhh
Q 025122 184 ATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEVLHF 242 (257)
Q Consensus 184 at~~HsiaERrRRerIneri~~Lr~LVP~~~KkmDKAsIL~eAI~YIK~LQ~QVq~Le~ 242 (257)
.+.+|+++||+||++||++|.+|++|||+++.++||++||.+||+||++||.+++.|+.
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~ 64 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQ 64 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34569999999999999999999999999866699999999999999999999999974
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.61 E-value=2.5e-16 Score=118.38 Aligned_cols=58 Identities=16% Similarity=0.375 Sum_probs=52.8
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHh
Q 025122 184 ATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEVLH 241 (257)
Q Consensus 184 at~~HsiaERrRRerIneri~~Lr~LVP~~~KkmDKAsIL~eAI~YIK~LQ~QVq~Le 241 (257)
.+.+|+++||+||++||++|.+|+.|||....++||++||+.||+||+.||.++.=|+
T Consensus 8 kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 8 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3457999999999999999999999999876569999999999999999999987765
No 4
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.58 E-value=4.9e-16 Score=112.67 Aligned_cols=55 Identities=22% Similarity=0.416 Sum_probs=49.8
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhccCCCCCC-----CCChhhHHHHHHHHHHHHHHHHH
Q 025122 184 ATHPRSIAERVRRTRISDRIRKLQDLVPNMDK-----QTNTADMLEEAVEYVKFLQKQIE 238 (257)
Q Consensus 184 at~~HsiaERrRRerIneri~~Lr~LVP~~~K-----kmDKAsIL~eAI~YIK~LQ~QVq 238 (257)
....|+++||+||++||+.|.+|++|||.+.. +++|++||++||+||++||.+++
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 45679999999999999999999999998872 48999999999999999998753
No 5
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.57 E-value=2.5e-16 Score=115.19 Aligned_cols=54 Identities=28% Similarity=0.433 Sum_probs=48.2
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhccCCCCCC------CCChhhHHHHHHHHHHHHHHHHH
Q 025122 185 THPRSIAERVRRTRISDRIRKLQDLVPNMDK------QTNTADMLEEAVEYVKFLQKQIE 238 (257)
Q Consensus 185 t~~HsiaERrRRerIneri~~Lr~LVP~~~K------kmDKAsIL~eAI~YIK~LQ~QVq 238 (257)
+.+|+++||+||++||..|..|+.|||.+.+ +++||+||+.||+||+.||++|+
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 4579999999999999999999999997633 36799999999999999998764
No 6
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.53 E-value=1e-15 Score=115.26 Aligned_cols=55 Identities=27% Similarity=0.372 Sum_probs=48.1
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHHHhccCCCCC---CCCChhhHHHHHHHHHHHHHH
Q 025122 181 RGCATHPRSIAERVRRTRISDRIRKLQDLVPNMD---KQTNTADMLEEAVEYVKFLQK 235 (257)
Q Consensus 181 Rg~at~~HsiaERrRRerIneri~~Lr~LVP~~~---KkmDKAsIL~eAI~YIK~LQ~ 235 (257)
..+++..|+++||+||++||+.|.+|+.|||.|. .++|||+||+.||+|||.||.
T Consensus 6 ~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 6 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 3344457999999999999999999999999873 349999999999999999974
No 7
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.46 E-value=7.2e-14 Score=105.57 Aligned_cols=56 Identities=29% Similarity=0.563 Sum_probs=51.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhccCCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHhh
Q 025122 186 HPRSIAERVRRTRISDRIRKLQDLVPNM--DKQTNTADMLEEAVEYVKFLQKQIEVLHF 242 (257)
Q Consensus 186 ~~HsiaERrRRerIneri~~Lr~LVP~~--~KkmDKAsIL~eAI~YIK~LQ~QVq~Le~ 242 (257)
..|+.+||+||+.||+.|..|+++||.+ .| ++|++||..||+||+.||.+++.|+.
T Consensus 4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~l~~ 61 (83)
T 1nkp_B 4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTHQQ 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3599999999999999999999999985 45 99999999999999999999888863
No 8
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.45 E-value=7.3e-14 Score=105.19 Aligned_cols=57 Identities=26% Similarity=0.540 Sum_probs=52.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhccCCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHhh
Q 025122 186 HPRSIAERVRRTRISDRIRKLQDLVPNMD-KQTNTADMLEEAVEYVKFLQKQIEVLHF 242 (257)
Q Consensus 186 ~~HsiaERrRRerIneri~~Lr~LVP~~~-KkmDKAsIL~eAI~YIK~LQ~QVq~Le~ 242 (257)
..|+.+||+||..||+.|..|+.+||.+. .+++|++||..||+||+.||.+++.|+.
T Consensus 14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~ 71 (80)
T 1hlo_A 14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35999999999999999999999999873 2499999999999999999999999974
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.43 E-value=1.6e-13 Score=105.95 Aligned_cols=56 Identities=21% Similarity=0.389 Sum_probs=51.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHhccCCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHhh
Q 025122 187 PRSIAERVRRTRISDRIRKLQDLVPNMD--KQTNTADMLEEAVEYVKFLQKQIEVLHF 242 (257)
Q Consensus 187 ~HsiaERrRRerIneri~~Lr~LVP~~~--KkmDKAsIL~eAI~YIK~LQ~QVq~Le~ 242 (257)
.|+.+||+||+.||+.|..|+++||.+. .+++|++||.+||+||++|+.+.+.+..
T Consensus 9 ~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~ 66 (88)
T 1nkp_A 9 THNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLIS 66 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999863 3499999999999999999999887653
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.42 E-value=1.2e-13 Score=104.52 Aligned_cols=57 Identities=25% Similarity=0.331 Sum_probs=50.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhccCCC---CCCCCChhhHHHHHHHHHHHHHHHHHHHhh
Q 025122 186 HPRSIAERVRRTRISDRIRKLQDLVPN---MDKQTNTADMLEEAVEYVKFLQKQIEVLHF 242 (257)
Q Consensus 186 ~~HsiaERrRRerIneri~~Lr~LVP~---~~KkmDKAsIL~eAI~YIK~LQ~QVq~Le~ 242 (257)
..|+..||+||+.||+.|..|+++||. .+|.+.|.+||..||+||++||+++++++.
T Consensus 7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 459999999999999999999999995 345347999999999999999999998875
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.26 E-value=9e-12 Score=94.78 Aligned_cols=56 Identities=23% Similarity=0.236 Sum_probs=50.6
Q ss_pred CCcHHHHHHHHHHHHHHHHHhccCCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHhh
Q 025122 187 PRSIAERVRRTRISDRIRKLQDLVPNMD--KQTNTADMLEEAVEYVKFLQKQIEVLHF 242 (257)
Q Consensus 187 ~HsiaERrRRerIneri~~Lr~LVP~~~--KkmDKAsIL~eAI~YIK~LQ~QVq~Le~ 242 (257)
.|+..||+||..||+.|..|+++||.+. .+++|++||..||+||+.||.+.+.|..
T Consensus 4 ~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~ 61 (80)
T 1nlw_A 4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVH 61 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999652 2489999999999999999999988763
No 12
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.10 E-value=6.2e-11 Score=107.50 Aligned_cols=56 Identities=14% Similarity=0.385 Sum_probs=42.9
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHHHHHHHH
Q 025122 182 GCATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQI 237 (257)
Q Consensus 182 g~at~~HsiaERrRRerIneri~~Lr~LVP~~~KkmDKAsIL~eAI~YIK~LQ~QV 237 (257)
..++.+|+++||+||++||+.|.+|+.|||....++||++||..||+|||.|+...
T Consensus 10 ~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 10 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 34455799999999999999999999999955545999999999999999998654
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.08 E-value=3.5e-11 Score=89.39 Aligned_cols=52 Identities=17% Similarity=0.389 Sum_probs=46.9
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhccCCCC-CCCCChhhHHHHHHHHHHHHHHHH
Q 025122 186 HPRSIAERVRRTRISDRIRKLQDLVPNM-DKQTNTADMLEEAVEYVKFLQKQI 237 (257)
Q Consensus 186 ~~HsiaERrRRerIneri~~Lr~LVP~~-~KkmDKAsIL~eAI~YIK~LQ~QV 237 (257)
..|+..||+|+..||+.|..|+++||.. +++++|..+|..||+||++||..+
T Consensus 14 ~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999999964 346999999999999999999864
No 14
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.98 E-value=1.4e-10 Score=106.59 Aligned_cols=54 Identities=30% Similarity=0.351 Sum_probs=47.6
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHhccCC----CCCCCCChhhHHHHHHHHHHHHHHH
Q 025122 182 GCATHPRSIAERVRRTRISDRIRKLQDLVP----NMDKQTNTADMLEEAVEYVKFLQKQ 236 (257)
Q Consensus 182 g~at~~HsiaERrRRerIneri~~Lr~LVP----~~~KkmDKAsIL~eAI~YIK~LQ~Q 236 (257)
+.++.+|+.+||+||++||+.|.+|+.||| ...| +||++||..||+|||.|+..
T Consensus 11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k-~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRK-LDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSC-CCHHHHHHHHHHHHHHHHCC
T ss_pred hhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccc-cCHHHHHHHHHHHHHHhhcc
Confidence 344567999999999999999999999999 4455 99999999999999999853
No 15
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.97 E-value=7.1e-10 Score=80.39 Aligned_cols=52 Identities=19% Similarity=0.309 Sum_probs=46.9
Q ss_pred CCcHHHHHHHHHHHHHHHHHhccCCCC--CCCCChhhHHHHHHHHHHHHHHHHH
Q 025122 187 PRSIAERVRRTRISDRIRKLQDLVPNM--DKQTNTADMLEEAVEYVKFLQKQIE 238 (257)
Q Consensus 187 ~HsiaERrRRerIneri~~Lr~LVP~~--~KkmDKAsIL~eAI~YIK~LQ~QVq 238 (257)
.|+..||+|+..||+.|..|+.+||.. ++++.|..+|..||+||++||..++
T Consensus 5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 378899999999999999999999965 4569999999999999999998653
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.85 E-value=3.1e-09 Score=82.21 Aligned_cols=48 Identities=29% Similarity=0.518 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhccCCCCCC---CCChhhHHHHHHHHHHHHHHHHHHHhh
Q 025122 195 RRTRISDRIRKLQDLVPNMDK---QTNTADMLEEAVEYVKFLQKQIEVLHF 242 (257)
Q Consensus 195 RRerIneri~~Lr~LVP~~~K---kmDKAsIL~eAI~YIK~LQ~QVq~Le~ 242 (257)
-|..||++|++|..|||.+.. +++|++||..||+||++||++++.+..
T Consensus 3 ~R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e 53 (83)
T 4ath_A 3 MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD 53 (83)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred chhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999997532 489999999999999999998887764
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.46 E-value=3.8e-08 Score=73.64 Aligned_cols=46 Identities=20% Similarity=0.339 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCC--CCCCChhhHHHHHHHHHHHHHH
Q 025122 190 IAERVRRTRISDRIRKLQDLVPNM--DKQTNTADMLEEAVEYVKFLQK 235 (257)
Q Consensus 190 iaERrRRerIneri~~Lr~LVP~~--~KkmDKAsIL~eAI~YIK~LQ~ 235 (257)
.-||+|...||+.|..||.+||.. ++++.|..+|..||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 448889999999999999999965 4469999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.97 E-value=1.4e-05 Score=63.24 Aligned_cols=50 Identities=22% Similarity=0.397 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHhccCCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHh
Q 025122 192 ERVRRTRISDRIRKLQDLVPNM--DKQTNTADMLEEAVEYVKFLQKQIEVLH 241 (257)
Q Consensus 192 ERrRRerIneri~~Lr~LVP~~--~KkmDKAsIL~eAI~YIK~LQ~QVq~Le 241 (257)
||.|=..||+-|..||.+||.. ++++.|..+|..||+||+.||..++.-.
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~ 84 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHL 84 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5778888999999999999965 5579999999999999999999766543
No 19
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=55.39 E-value=16 Score=25.91 Aligned_cols=26 Identities=23% Similarity=0.592 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCC
Q 025122 190 IAERVRRTRISDRIRKLQDLVPNMDK 215 (257)
Q Consensus 190 iaERrRRerIneri~~Lr~LVP~~~K 215 (257)
.++|-+|..-++-++.|+.+.|+.++
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD~ 28 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMDP 28 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCH
Confidence 47888899999999999999999877
No 20
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=46.37 E-value=25 Score=29.24 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=29.8
Q ss_pred HHHHHHHHHhccCCCC---CCCCChhhHHHHHHHHHHHH
Q 025122 198 RISDRIRKLQDLVPNM---DKQTNTADMLEEAVEYVKFL 233 (257)
Q Consensus 198 rIneri~~Lr~LVP~~---~KkmDKAsIL~eAI~YIK~L 233 (257)
.|.-.|+.|+++||.- ..++-|..||..|.|+++.|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 4778899999999953 33588999999999998876
No 21
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=40.13 E-value=6 Score=36.17 Aligned_cols=18 Identities=28% Similarity=0.261 Sum_probs=0.0
Q ss_pred CCCCCCccccccccCChH
Q 025122 22 RGELSRGGLARLRSAPAS 39 (257)
Q Consensus 22 ~~~~~~~~l~r~~sapa~ 39 (257)
||.+..+|+.+.-|+|.-
T Consensus 196 ~~~~~~~~~~~~~~~~p~ 213 (279)
T 3p8c_D 196 GGSGGSGGSKRHPSTLPV 213 (279)
T ss_dssp ------------------
T ss_pred CCCCCCCccccCCCCCCC
Confidence 334444588898888764
No 22
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=36.12 E-value=70 Score=21.64 Aligned_cols=40 Identities=10% Similarity=0.261 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHHHHHHH
Q 025122 196 RTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQ 236 (257)
Q Consensus 196 RerIneri~~Lr~LVP~~~KkmDKAsIL~eAI~YIK~LQ~Q 236 (257)
++.|.+.|..-...+|.....++... +.+.|.||+.|..+
T Consensus 48 ~~~l~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~~ 87 (89)
T 1f1f_A 48 VAAVAYQVTNGKNAMPGFNGRLSPLQ-IEDVAAYVVDQAEK 87 (89)
T ss_dssp HHHHHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCccccCCCHHH-HHHHHHHHHHHhhc
Confidence 44555555555567887665466555 47799999998764
No 23
>3ng9_A Capsid protein; beta barrel, single-stranded DNA V parvovirus, icosahedral virus; HET: ADE; 2.50A {Adeno-associated virus - 1} PDB: 3kic_A* 3kie_A* 3j1q_A 3oah_A* 1vu0_U 1vu1_o 3tsx_A 3shm_A 1lp3_A 3j1s_A 2qa0_A 3ra2_A 3ra4_A* 3ra8_A* 3ra9_A* 3raa_A* 3ux1_A
Probab=34.38 E-value=13 Score=38.22 Aligned_cols=7 Identities=29% Similarity=0.980 Sum_probs=3.7
Q ss_pred CChHHHH
Q 025122 36 APASWID 42 (257)
Q Consensus 36 apa~~l~ 42 (257)
+|-.|=.
T Consensus 293 SP~DwQ~ 299 (736)
T 3ng9_A 293 SPRDWQR 299 (736)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 4566643
No 24
>3ntt_A Capsid protein; gene therapy vector, cystic fibros sialic acid receptor, icosahedral virus; 3.45A {Adeno-associated virus - 5}
Probab=34.07 E-value=12 Score=38.33 Aligned_cols=11 Identities=27% Similarity=0.884 Sum_probs=5.6
Q ss_pred CChHHHHHHHhh
Q 025122 36 APASWIDALLEE 47 (257)
Q Consensus 36 apa~~l~~l~~~ 47 (257)
+|-.|=. |+.+
T Consensus 283 SP~DwQ~-Lin~ 293 (724)
T 3ntt_A 283 SPRDWQR-LINN 293 (724)
T ss_dssp CHHHHHH-HHHH
T ss_pred CHHHHHH-HHHh
Confidence 4666743 4433
No 25
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=28.94 E-value=1.1e+02 Score=20.38 Aligned_cols=38 Identities=11% Similarity=0.166 Sum_probs=25.1
Q ss_pred HHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHHHHHHH
Q 025122 198 RISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQ 236 (257)
Q Consensus 198 rIneri~~Lr~LVP~~~KkmDKAsIL~eAI~YIK~LQ~Q 236 (257)
.|...|+.-+..+|.....++... +...+.||+.|..+
T Consensus 47 ~~~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~~ 84 (86)
T 3ph2_B 47 AITTVVTNGKAGMPAFKGRLTDDQ-IAAVAAYVLDQAEK 84 (86)
T ss_dssp HHHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCcccCCCHHH-HHHHHHHHHHhhhc
Confidence 344455555567887754466665 46799999998754
No 26
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=28.33 E-value=1.1e+02 Score=20.75 Aligned_cols=39 Identities=13% Similarity=0.189 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHHHHHH
Q 025122 196 RTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQK 235 (257)
Q Consensus 196 RerIneri~~Lr~LVP~~~KkmDKAsIL~eAI~YIK~LQ~ 235 (257)
.+.|...|+.-...+|.....++... +.+.|.||+.|..
T Consensus 46 ~~~l~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~ 84 (90)
T 1cyi_A 46 VESIIYQVENGKGAMPAWADRLSEEE-IQAVAEYVFKQAT 84 (90)
T ss_dssp HHHHHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCcccccCCHHH-HHHHHHHHHhccc
Confidence 34455555555567887654466555 5789999999876
No 27
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=27.58 E-value=32 Score=27.65 Aligned_cols=32 Identities=13% Similarity=0.213 Sum_probs=23.4
Q ss_pred hccCCCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 025122 207 QDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEV 239 (257)
Q Consensus 207 r~LVP~~~KkmDKAsIL~eAI~YIK~LQ~QVq~ 239 (257)
..++|+=.... ....|+++++|++.++++|++
T Consensus 190 ~~i~pgHg~~~-~~~~l~~~~~~l~~~~~~~~~ 221 (223)
T 1m2x_A 190 QYVVAGHDDWK-DQRSIQHTLDLINEYQQKQKA 221 (223)
T ss_dssp SEEEESBSCCC-STTHHHHHHHHHHHHHHTC--
T ss_pred CEEEeCCCCcC-CHHHHHHHHHHHHHHHHHHhc
Confidence 35677655544 467899999999999998864
No 28
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=27.32 E-value=1.2e+02 Score=20.08 Aligned_cols=37 Identities=19% Similarity=0.343 Sum_probs=23.7
Q ss_pred HHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHHHHHH
Q 025122 198 RISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQK 235 (257)
Q Consensus 198 rIneri~~Lr~LVP~~~KkmDKAsIL~eAI~YIK~LQ~ 235 (257)
.|.+.|+.-...+|.....++... +.+.+.||+.|..
T Consensus 46 ~l~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~ 82 (85)
T 1gdv_A 46 AITYQVQNGKNAMPAFGGRLVDED-IEDAANYVLSQSE 82 (85)
T ss_dssp HHHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCCCCCCCCCCCHHH-HHHHHHHHHHHhh
Confidence 344444443467887654466555 4679999999875
No 29
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=26.25 E-value=1.2e+02 Score=20.47 Aligned_cols=39 Identities=10% Similarity=0.157 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHHHHHH
Q 025122 196 RTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQK 235 (257)
Q Consensus 196 RerIneri~~Lr~LVP~~~KkmDKAsIL~eAI~YIK~LQ~ 235 (257)
.+.|.+.|+.-...+|.....++... +.+.|.||+.|..
T Consensus 47 ~~~l~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~ 85 (89)
T 1c6r_A 47 LEAITYQVENGKGAMPAWSGTLDDDE-IAAVAAYVYDQAS 85 (89)
T ss_dssp HHHHHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCcCCHHH-HHHHHHHHHHHcc
Confidence 34455555555567887654466655 5779999999875
No 30
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=24.11 E-value=53 Score=26.62 Aligned_cols=32 Identities=13% Similarity=0.220 Sum_probs=23.7
Q ss_pred hccCCCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 025122 207 QDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEV 239 (257)
Q Consensus 207 r~LVP~~~KkmDKAsIL~eAI~YIK~LQ~QVq~ 239 (257)
..++|+=....+ ..+++.+++||+.+.+++.+
T Consensus 200 ~~v~pgHg~~~~-~~~~~~~~~~l~~~~~~~~~ 231 (232)
T 1a7t_A 200 RYVVPGHGNYGG-TELIEHTKQIVNQYIESTSK 231 (232)
T ss_dssp SEEEESSSCCBC-THHHHHHHHHHHHHHHHHC-
T ss_pred CEEECCCCCccc-HHHHHHHHHHHHHHHHHhcC
Confidence 457776665344 57899999999999988753
No 31
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=23.02 E-value=1.2e+02 Score=23.36 Aligned_cols=26 Identities=8% Similarity=0.175 Sum_probs=20.7
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHhh
Q 025122 217 TNTADMLEEAVEYVKFLQKQIEVLHF 242 (257)
Q Consensus 217 mDKAsIL~eAI~YIK~LQ~QVq~Le~ 242 (257)
.....-|.++..-|..|+..+..++.
T Consensus 58 ~s~~~~L~e~~~kid~L~~el~K~q~ 83 (98)
T 2ke4_A 58 ASLEPQIAETLSNIERLKLEVQKYEA 83 (98)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888899999999888764
No 32
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=22.88 E-value=1.6e+02 Score=20.50 Aligned_cols=12 Identities=42% Similarity=0.418 Sum_probs=6.2
Q ss_pred HHHHHHHHHHhh
Q 025122 231 KFLQKQIEVLHF 242 (257)
Q Consensus 231 K~LQ~QVq~Le~ 242 (257)
..|+.++..|..
T Consensus 47 ~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 47 ANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445555555543
No 33
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=22.06 E-value=56 Score=28.74 Aligned_cols=45 Identities=20% Similarity=0.406 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHh
Q 025122 195 RRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQKQIEVLH 241 (257)
Q Consensus 195 RRerIneri~~Lr~LVP~~~KkmDKAsIL~eAI~YIK~LQ~QVq~Le 241 (257)
=|..++.=...|+.|+-..- .++-.++.++|+|+|.|-.=+..|.
T Consensus 52 v~~Dl~~F~~QL~qL~~~~i--~~Tre~v~d~l~YLkkLD~l~~~Lq 96 (204)
T 2jqq_A 52 TQSDLQKFMTQLDHLIKDDI--SNTQEIIKDVLEYLKKLDEIYGSLR 96 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHSC--STTHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777765332 4788899999999999987666554
No 34
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=20.98 E-value=48 Score=27.95 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=16.5
Q ss_pred HHHH-HHHHHHHHHHHHHhccC
Q 025122 190 IAER-VRRTRISDRIRKLQDLV 210 (257)
Q Consensus 190 iaER-rRRerIneri~~Lr~LV 210 (257)
..|| +|++||..+-..|++|+
T Consensus 11 e~Ek~~~~~rI~~K~~~LqeL~ 32 (155)
T 2aze_A 11 EVERQRRLERIKQKQSQLQELI 32 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566 68889999988888775
No 35
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=20.79 E-value=1.8e+02 Score=19.83 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHHHHHH
Q 025122 196 RTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQK 235 (257)
Q Consensus 196 RerIneri~~Lr~LVP~~~KkmDKAsIL~eAI~YIK~LQ~ 235 (257)
.+.|.+.|..-+..+|.....++... +...|.||+.|..
T Consensus 49 ~~~l~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~ 87 (91)
T 1ls9_A 49 LEAIKYQVNNGKGAMPAWADRLDEDD-IEAVSNYVYDQAV 87 (91)
T ss_dssp HHHHHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcCCCcchhhhCCHHH-HHHHHHHHHHhcc
Confidence 34455555554567887654466555 5779999999875
No 36
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=20.19 E-value=62 Score=22.52 Aligned_cols=18 Identities=17% Similarity=0.104 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 025122 227 VEYVKFLQKQIEVLHFLE 244 (257)
Q Consensus 227 I~YIK~LQ~QVq~Le~l~ 244 (257)
-.||..|+.+|+.||.+-
T Consensus 57 ~~~~~~L~~ri~~LE~~l 74 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 479999999999998753
Done!