Query 025125
Match_columns 257
No_of_seqs 119 out of 211
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 04:14:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025125.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025125hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u7l_A Vacuolar ATP synthase s 100.0 3.8E-90 1.3E-94 654.4 26.2 247 1-250 7-260 (392)
2 3rrk_A V-type ATPase 116 kDa s 80.6 21 0.00073 31.9 12.2 109 120-248 99-213 (357)
3 2p22_C Protein SRN2; endosome, 57.2 6.3 0.00022 33.5 2.9 47 34-80 24-74 (192)
4 2a2f_X Exocyst complex compone 56.0 5.4 0.00018 36.5 2.4 105 63-169 14-124 (325)
5 3gwk_C SAG1039, putative uncha 54.2 56 0.0019 23.3 9.5 87 48-153 9-95 (98)
6 4ioe_A Secreted protein ESXB; 48.5 67 0.0023 22.5 7.5 81 47-146 9-89 (93)
7 3ghg_A Fibrinogen alpha chain; 40.4 24 0.00082 34.6 4.2 25 57-81 53-77 (562)
8 3htk_A Structural maintenance 40.0 80 0.0027 20.9 6.2 38 116-153 1-38 (60)
9 3zbh_A ESXA; unknown function, 39.6 96 0.0033 21.7 9.1 87 48-153 10-96 (99)
10 3ghg_C Fibrinogen gamma chain; 35.8 2.2E+02 0.0076 26.8 10.0 93 54-157 24-135 (411)
11 1ng7_A Poliovirus 3A-N, genome 34.8 7.2 0.00025 27.4 -0.3 21 229-249 26-47 (60)
12 1m1j_C Fibrinogen gamma chain; 32.8 2.2E+02 0.0077 26.6 9.6 29 54-82 24-52 (409)
13 1fxk_A Prefoldin; archaeal pro 28.6 1.4E+02 0.0047 21.7 6.1 41 115-155 60-100 (107)
14 2akf_A Coronin-1A; coiled coil 24.3 68 0.0023 19.4 2.8 24 130-153 2-25 (32)
15 3u0c_A Invasin IPAB, 62 kDa an 23.8 1.8E+02 0.0061 24.5 6.3 36 122-157 98-133 (201)
16 1g6u_A Domain swapped dimer; d 22.1 1.7E+02 0.0057 18.9 4.5 26 128-153 21-46 (48)
17 1fxk_A Prefoldin; archaeal pro 21.9 1.8E+02 0.0062 21.0 5.6 52 89-153 50-105 (107)
18 3bj4_A Potassium voltage-gated 21.0 1.9E+02 0.0066 19.3 5.3 38 109-146 6-43 (49)
No 1
>1u7l_A Vacuolar ATP synthase subunit C; hydrolase, structural protein; HET: TLA; 1.75A {Saccharomyces cerevisiae} SCOP: e.57.1.1
Probab=100.00 E-value=3.8e-90 Score=654.39 Aligned_cols=247 Identities=32% Similarity=0.566 Sum_probs=234.4
Q ss_pred CCceEEEEeecCCC----ChHHHHHH-HHHHhccCCCCCCceeecCCCCCCcChhhhHhhhhhhHhhhhhHHHHHHHHHH
Q 025125 1 MASRYWVVSLPVQN----SAASVWNR-LQEQISKHSFDTPLYRFNIPNLRVGTLDSLLALSDDLVKSNSFVESVSHKIRR 75 (257)
Q Consensus 1 m~~~~wLvs~P~~~----~~~~~~~~-L~~~~~~~~~~~~~~~f~iP~fKvGTLDsLv~lsDeL~K~D~~~e~~v~Ki~~ 75 (257)
|+++|||||+|.++ +++++|+. |+..++++ .+.+++|+||+|||||||+||+|||||+|+|++||++++||++
T Consensus 7 ~~~~y~LvSlP~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~f~IP~lkvGTLDsLv~lsDdL~Kld~~ve~v~~Ki~~ 84 (392)
T 1u7l_A 7 TANDFILISLPQNAQPVTAPGSKTDSWFNETLIGG--RAFVSDFKIPEFKIGSLDTLIVESEELSKVDNQIGASIGKIIE 84 (392)
T ss_dssp CCCEEEEEEEETTCCCTTSTTCCHHHHHHHTGGGG--TSEEEECCCCCCBCSCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEccCCCCCCccHHHHHHHHHHhhccCC--CCccccccCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34699999999864 34588987 88887754 4789999999999999999999999999999999999999999
Q ss_pred HHHHhhcc-ccccccceeECCcChhhhhcccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025125 76 QIEELERV-SGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAIN 154 (257)
Q Consensus 76 ~~~~l~~~-~~~~~~~l~v~~~~~~~Yl~~F~Wd~aKyp~~~~l~elv~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~~~ 154 (257)
++++++++ .++..+++ +||+++++||++|+||+||||.++||+||+++|++++++||+|+|+|+++||++|++|++++
T Consensus 85 ~~~~~~~~~~~~~~~~l-vn~~~~~~yl~~F~Wd~aKyp~~~~L~elv~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~~~ 163 (392)
T 1u7l_A 85 ILQGLNETSTNAYRTLP-INNMPVPEYLENFQWQTRKFKLDKSIKDLITLISNESSQLDADVRATYANYNSAKTNLAAAE 163 (392)
T ss_dssp HHHHTTSSCSSSCCSCC-BTTBCHHHHHHTCCCCTTTSCTTSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcchhhHHHHh-cCCCCHHHHHhhceeccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999864 45667788 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCcccccCCCCCCCCCcc-cCCcceEEEEEecCCChHHHHHHhccccCccccCCcccccccCCeeEEEEEEecccH
Q 025125 155 RKQSGSLAVRDLSNLVKPEDII-TSEHLVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVA 233 (257)
Q Consensus 155 RK~~GnL~~rsL~diV~~edfv-dSEyLtTllVvVPk~~~~ewl~~YEtLs~~VVPrSs~~i~eD~e~~L~~VtlFKk~~ 233 (257)
||++|||++|||++||+||||| |||||+|++|||||++++||+++||||++|||||||++|++|+||+||+||+|||++
T Consensus 164 RK~~GnL~~rsL~~iV~~edfv~dSEyL~TllVvVPk~~~~dwl~~YEtL~~~VVPrSs~~i~~D~ey~L~~VtlFkk~~ 243 (392)
T 1u7l_A 164 RKKTGDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVVPASASVIAEDAEYVLFNVHLFKKNV 243 (392)
T ss_dssp HHTCSCTTTSCCTTTCCGGGSCCSCSSEEEEEEEEEGGGHHHHHHHGGGSSTTBCTTCCEEEEECSSEEEEEEEEEGGGH
T ss_pred cccCCceeeeeHHHhcCHHHccCccccceEEEEEEeCccHHHHHHHHhhcCCCccCChhhhhhcCCCceEEEEEEEhhhH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeeCcc
Q 025125 234 DNFRIAAREKGFQVGEK 250 (257)
Q Consensus 234 ~eF~~~aRe~kf~vRdf 250 (257)
++|+++|||+||+||||
T Consensus 244 ~eF~~~~Re~kf~vRdF 260 (392)
T 1u7l_A 244 QEFTTAAREKKFIPREF 260 (392)
T ss_dssp HHHHHHHHHTTCEEECC
T ss_pred HHHHHHHHHcCCccccC
Confidence 99999999999999986
No 2
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=80.62 E-value=21 Score=31.94 Aligned_cols=109 Identities=8% Similarity=-0.029 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhCCC-CcccccCCCCCCCCCcccCCcceEEEEEe-cCCChH
Q 025125 120 EIVDGIHTLVAKIEDDLKVRVAEYNNVRSQ---LNAINRKQSG-SLAVRDLSNLVKPEDIITSEHLVTLLAVV-PKYSQK 194 (257)
Q Consensus 120 elv~~i~~~v~~id~dlk~k~~~Yn~~K~~---l~~~~RK~~G-nL~~rsL~diV~~edfvdSEyLtTllVvV-Pk~~~~ 194 (257)
+.++.+..++..+++.+...-+....++.. +..+.-= + +|- -+-++--+...| |+....
T Consensus 99 ~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p~--~~~ld--------------~~~~~g~~~g~ip~~~~~~ 162 (357)
T 3rrk_A 99 AVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAAL--AHGLD--------------ESPRLGVIPFLVAKPEELE 162 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTTTT--------------TCTTEEEEEEEESCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh--hccCC--------------ccceeeeeeEEecChhhHH
Confidence 345566666666666666666666666666 5555322 2 332 244566666689 788899
Q ss_pred HHHHHhccccC-ccccCCcccccccCCeeEEEEEEecccHHHHHHHHHHcCCeeC
Q 025125 195 DWLASYETLTS-YVVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAREKGFQVG 248 (257)
Q Consensus 195 ewl~~YEtLs~-~VVPrSs~~i~eD~e~~L~~VtlFKk~~~eF~~~aRe~kf~vR 248 (257)
.|.+..+..++ +++ ..+.++.++..+-|..-+...++....|+..+|..=
T Consensus 163 ~~~~~l~~~~~~~~~----~~~~~~~~~~~~vv~~~~~~~~~v~~il~s~~f~~~ 213 (357)
T 3rrk_A 163 AVRKALQEALADRFV----LEAEPLENQLAALVVVKRSELEAARSSLSRLGLAEL 213 (357)
T ss_dssp HHHHHHHHHHTTSCE----EEEEECSSSEEEEEEEEGGGHHHHHHHHHTTTCCBC
T ss_pred HHHHHHHHhcCCeEE----EEeecCCCcEEEEEEEEHHHHHHHHHHHHHCCCeec
Confidence 99888776433 222 234667777666666668889999999999998643
No 3
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=57.15 E-value=6.3 Score=33.55 Aligned_cols=47 Identities=9% Similarity=0.173 Sum_probs=35.0
Q ss_pred CCceeecCCC-CCCcChhhhHhhhhhh-HhhhhhHHHH--HHHHHHHHHHh
Q 025125 34 TPLYRFNIPN-LRVGTLDSLLALSDDL-VKSNSFVESV--SHKIRRQIEEL 80 (257)
Q Consensus 34 ~~~~~f~iP~-fKvGTLDsLv~lsDeL-~K~D~~~e~~--v~Ki~~~~~~l 80 (257)
+++..|.+|+ ++--|.+.|-.+.++= .+++.++... ++.+...+.++
T Consensus 24 ~~~~~~~LP~~L~~LS~~eL~~LL~~~~dlL~~~v~~l~~~q~~~~~~e~l 74 (192)
T 2p22_C 24 EKSKNIPLPEGINLLSSKEIIDLIQTHRHQLELYVTKFNPLTDFAGKIHAF 74 (192)
T ss_dssp --CCCCCCSSGGGSCTTHHHHHHHHHCHHHHHHHGGGGSCCHHHHHHHHHH
T ss_pred CcccCCCCCHHHHhCCHHHHHHHHhChHHHHHHHHHhchhHHHHHHHHHHH
Confidence 3467899997 9999999999999998 8888887655 55554444443
No 4
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=55.99 E-value=5.4 Score=36.52 Aligned_cols=105 Identities=15% Similarity=0.200 Sum_probs=70.7
Q ss_pred hhhHHHHHHHHHHHHHHhhccccccccceeECC-cChhhhhccccccc-----ccCCCCCCHHHHHHHHHHHHHHHHHHH
Q 025125 63 NSFVESVSHKIRRQIEELERVSGIESSSLSVDG-VPVDTYLTRFVWDE-----AKYPTMSPLREIVDGIHTLVAKIEDDL 136 (257)
Q Consensus 63 D~~~e~~v~Ki~~~~~~l~~~~~~~~~~l~v~~-~~~~~Yl~~F~Wd~-----aKyp~~~~l~elv~~i~~~v~~id~dl 136 (257)
|.+.|-++++....+.++..+.+ ...+.|+. ...+..+.+|.|.. ..||..-|-...+=.+...+.+.=++.
T Consensus 14 d~Y~elLl~~~~~~f~~il~~D~--y~Pm~V~~~eey~~v~~~~~~~~~~~~~~~fP~~lPFS~~vP~~c~~ir~fi~~~ 91 (325)
T 2a2f_X 14 DHYNEVLLQRWVHVFREILDKEQ--FLPMVVQNTEEYECIIERFPFHSEQLENAPFPKKFPFSRMVPEVYHQAKEFMYAC 91 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT--TCBCCCCCHHHHHHHHTTSCCCCCCCC----CCCSSSBTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC--CCeeeeCCHHHHHHHHhcCCCCCcccccCCCCcccCccHHHHHHHHHHHHHHHHH
Confidence 78899999999999999886543 66777766 45777789999965 578988888888877777777766665
Q ss_pred HHHHHHHHHHHHHHHHhhhhCCCCcccccCCCC
Q 025125 137 KVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNL 169 (257)
Q Consensus 137 k~k~~~Yn~~K~~l~~~~RK~~GnL~~rsL~di 169 (257)
=.=...++.--+....+-||....|++|.+++.
T Consensus 92 ~~F~~~~~~~~~eidd~lrks~d~LL~~~v~~~ 124 (325)
T 2a2f_X 92 MKFAEELTLSPNEVAAMVRKAANLLLTRSFSGC 124 (325)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 444444433334445555666666666644443
No 5
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=54.18 E-value=56 Score=23.26 Aligned_cols=87 Identities=14% Similarity=0.207 Sum_probs=67.1
Q ss_pred ChhhhHhhhhhhHhhhhhHHHHHHHHHHHHHHhhccccccccceeECCcChhhhhcccccccccCCCCCCHHHHHHHHHH
Q 025125 48 TLDSLLALSDDLVKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHT 127 (257)
Q Consensus 48 TLDsLv~lsDeL~K~D~~~e~~v~Ki~~~~~~l~~~~~~~~~~l~v~~~~~~~Yl~~F~Wd~aKyp~~~~l~elv~~i~~ 127 (257)
|.+.|-..+.++...-..+++.+..+...+..+... -.|..-..|...|+ .+..-+..+..
T Consensus 9 ~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~---------W~G~a~~aF~~~~~----------~~~~~~~~~~~ 69 (98)
T 3gwk_C 9 TPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDEN---------WDGSTFDSFEAQFN----------ELSPKITEFAQ 69 (98)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------BCSSTTHHHHHHHH----------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---------cCcHHHHHHHHHHH----------HHHHHHHHHHH
Confidence 678899999999999999999999999988888532 24556667776553 34455666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025125 128 LVAKIEDDLKVRVAEYNNVRSQLNAI 153 (257)
Q Consensus 128 ~v~~id~dlk~k~~~Yn~~K~~l~~~ 153 (257)
.+..|...|+.-+..|.++-.++++.
T Consensus 70 ~L~~i~~~L~~~a~~~~~~D~~~A~~ 95 (98)
T 3gwk_C 70 LLEDINQQLLKVADIIEQTDADIASQ 95 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78888888999999999988877664
No 6
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=48.45 E-value=67 Score=22.47 Aligned_cols=81 Identities=16% Similarity=0.255 Sum_probs=59.7
Q ss_pred cChhhhHhhhhhhHhhhhhHHHHHHHHHHHHHHhhccccccccceeECCcChhhhhcccccccccCCCCCCHHHHHHHHH
Q 025125 47 GTLDSLLALSDDLVKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIH 126 (257)
Q Consensus 47 GTLDsLv~lsDeL~K~D~~~e~~v~Ki~~~~~~l~~~~~~~~~~l~v~~~~~~~Yl~~F~Wd~aKyp~~~~l~elv~~i~ 126 (257)
-+.+.|-..+.++...-..+++.+..+...+..+... -.|..-..|...|+ .+..-...+.
T Consensus 9 v~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~~~---------W~G~a~~af~~~~~----------~~~~~~~~~~ 69 (93)
T 4ioe_A 9 ITPEELERIAGNFKNAAGEAQSQINRLEGDINSLEGQ---------WAGATQAKFRGEFI----------QSKQAMQQYI 69 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS---------SCHHHHHHHHHHHH----------HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------cCchhhHHHHHHHH----------HHHHHHHHHH
Confidence 4789999999999999999999999999999988632 23555566665552 3444455666
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025125 127 TLVAKIEDDLKVRVAEYNNV 146 (257)
Q Consensus 127 ~~v~~id~dlk~k~~~Yn~~ 146 (257)
..+..|...|+..+..|.++
T Consensus 70 ~~L~~i~~~L~~~A~~~~~~ 89 (93)
T 4ioe_A 70 PILEGISTDLKRIADKFRNT 89 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 67777777777788777765
No 7
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=40.38 E-value=24 Score=34.57 Aligned_cols=25 Identities=12% Similarity=0.101 Sum_probs=20.3
Q ss_pred hhhHhhhhhHHHHHHHHHHHHHHhh
Q 025125 57 DDLVKSNSFVESVSHKIRRQIEELE 81 (257)
Q Consensus 57 DeL~K~D~~~e~~v~Ki~~~~~~l~ 81 (257)
.-|.|.|.=+...|.+|.+++.++.
T Consensus 53 glLdkqErDltkrINELKnqLEdls 77 (562)
T 3ghg_A 53 GLIDEVNQDFTNRINKLKNSLFEYQ 77 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred hhHHhhcCcHHHHHHHHHHHHHHHH
Confidence 4577888888888888888888884
No 8
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=39.98 E-value=80 Score=20.94 Aligned_cols=38 Identities=13% Similarity=0.388 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025125 116 SPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAI 153 (257)
Q Consensus 116 ~~l~elv~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~~ 153 (257)
+|+.+-+..+...+....+.++.+-..|..++.++.++
T Consensus 1 kP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 38 (60)
T 3htk_A 1 KPFANTKKTLENQVEELTEKCSLKTDEFLKAKEKINEI 38 (60)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666677777777777667777777777776666654
No 9
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=39.55 E-value=96 Score=21.71 Aligned_cols=87 Identities=13% Similarity=0.270 Sum_probs=65.1
Q ss_pred ChhhhHhhhhhhHhhhhhHHHHHHHHHHHHHHhhccccccccceeECCcChhhhhcccccccccCCCCCCHHHHHHHHHH
Q 025125 48 TLDSLLALSDDLVKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPVDTYLTRFVWDEAKYPTMSPLREIVDGIHT 127 (257)
Q Consensus 48 TLDsLv~lsDeL~K~D~~~e~~v~Ki~~~~~~l~~~~~~~~~~l~v~~~~~~~Yl~~F~Wd~aKyp~~~~l~elv~~i~~ 127 (257)
+.+.|-..+.++...-..+++.+..+...+..+... -.|..-..|...|+ ....-...+..
T Consensus 10 ~~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~~---------W~G~a~~af~~~~~----------~~~~~~~~~~~ 70 (99)
T 3zbh_A 10 TPEELRGVARQYNVESSNVTELIARLDQMSHTLQGI---------WEGASSEAFIQQYQ----------ELRPSFEKMAV 70 (99)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------CCSHHHHHHHHHHH----------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------ccChHHHHHHHHHH----------HHHHHHHHHHH
Confidence 688999999999999999999999999999888632 23555566665543 22344556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025125 128 LVAKIEDDLKVRVAEYNNVRSQLNAI 153 (257)
Q Consensus 128 ~v~~id~dlk~k~~~Yn~~K~~l~~~ 153 (257)
.+..|-..|+.-...|.++-....+.
T Consensus 71 ~L~~i~~~L~~~a~~~~~~d~~~a~~ 96 (99)
T 3zbh_A 71 LLNEVGQQLHNSATILEDTDQQIASQ 96 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77778888888889998887776654
No 10
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=35.83 E-value=2.2e+02 Score=26.80 Aligned_cols=93 Identities=6% Similarity=0.137 Sum_probs=54.9
Q ss_pred hhhhhhHhhhhhHHHHHHHHHHHHHHhhccccccccceeECCcChhhhhc--ccccccccCCCCCC--------------
Q 025125 54 ALSDDLVKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPVDTYLT--RFVWDEAKYPTMSP-------------- 117 (257)
Q Consensus 54 ~lsDeL~K~D~~~e~~v~Ki~~~~~~l~~~~~~~~~~l~v~~~~~~~Yl~--~F~Wd~aKyp~~~~-------------- 117 (257)
.++|-|.|.+.-|...+..+.+.+.++..... ...+||+ +=.|..+.=+....
T Consensus 24 gl~d~L~kye~~V~~~l~~L~~~l~~isn~Ts-----------~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~ 92 (411)
T 3ghg_C 24 GIADFLSTYQTKVDKDLQSLEDILHQVENKTS-----------EVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEE 92 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhccchhhHHHHHHHHHHHHHhhhh-----------HHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHH
Confidence 67888999999888888888888888864211 1222332 22333333322211
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhC
Q 025125 118 ---LREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQ 157 (257)
Q Consensus 118 ---l~elv~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~~~RK~ 157 (257)
+..++......+..|..-+....+.-++++..+++++.+-
T Consensus 93 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~ 135 (411)
T 3ghg_C 93 IMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 135 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1333444455555555556666666677777777777653
No 11
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=34.79 E-value=7.2 Score=27.42 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=16.3
Q ss_pred ecccH-HHHHHHHHHcCCeeCc
Q 025125 229 FGRVA-DNFRIAAREKGFQVGE 249 (257)
Q Consensus 229 FKk~~-~eF~~~aRe~kf~vRd 249 (257)
+|.+- ++.+..|+++||++-+
T Consensus 26 Lksvds~eV~~YC~~kGwIiP~ 47 (60)
T 1ng7_A 26 LQAVDSQEVRDYCEKKGWIVNI 47 (60)
T ss_dssp HHHHCCHHHHHHHHHHTCCCCC
T ss_pred HHcCCCHHHHHHHHHCCceecc
Confidence 34444 6789999999999864
No 12
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=32.83 E-value=2.2e+02 Score=26.64 Aligned_cols=29 Identities=10% Similarity=0.084 Sum_probs=21.5
Q ss_pred hhhhhhHhhhhhHHHHHHHHHHHHHHhhc
Q 025125 54 ALSDDLVKSNSFVESVSHKIRRQIEELER 82 (257)
Q Consensus 54 ~lsDeL~K~D~~~e~~v~Ki~~~~~~l~~ 82 (257)
.++|-|.|.+.-|..-++.+++.+.++..
T Consensus 24 ~i~d~L~k~e~~V~~~l~~LE~~l~elsn 52 (409)
T 1m1j_C 24 GIADFFNKYRLTTDGELLEIEGLLQQATN 52 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 56777788888777777777777777753
No 13
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=28.58 E-value=1.4e+02 Score=21.71 Aligned_cols=41 Identities=10% Similarity=0.102 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025125 115 MSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINR 155 (257)
Q Consensus 115 ~~~l~elv~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~~~R 155 (257)
.++..+....|.+....|+..++.....+..+...+..++.
T Consensus 60 ~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 60 RVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777777777777777777777776666654
No 14
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=24.26 E-value=68 Score=19.36 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 025125 130 AKIEDDLKVRVAEYNNVRSQLNAI 153 (257)
Q Consensus 130 ~~id~dlk~k~~~Yn~~K~~l~~~ 153 (257)
+.+|+|+|...+--+++...+..+
T Consensus 2 srlee~~r~l~~ivq~lq~r~drl 25 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDRL 25 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666665555555555554444
No 15
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=23.76 E-value=1.8e+02 Score=24.46 Aligned_cols=36 Identities=11% Similarity=0.293 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhC
Q 025125 122 VDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQ 157 (257)
Q Consensus 122 v~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~~~RK~ 157 (257)
+....++.+...++++.-...|+.++...+++++|-
T Consensus 98 ~qTaL~eAQ~AtD~y~~Ainny~~Ads~~~~lekKv 133 (201)
T 3u0c_A 98 INTLLSETEGLTRDYEKQINKLKNADSKIKDLENKI 133 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 344456778899999999999999999999999883
No 16
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=22.07 E-value=1.7e+02 Score=18.91 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025125 128 LVAKIEDDLKVRVAEYNNVRSQLNAI 153 (257)
Q Consensus 128 ~v~~id~dlk~k~~~Yn~~K~~l~~~ 153 (257)
++..+|.++.+.-.....+|+.||++
T Consensus 21 elaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555566677777776
No 17
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=21.87 E-value=1.8e+02 Score=21.04 Aligned_cols=52 Identities=12% Similarity=0.144 Sum_probs=43.2
Q ss_pred cceeECCc----ChhhhhcccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025125 89 SSLSVDGV----PVDTYLTRFVWDEAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAI 153 (257)
Q Consensus 89 ~~l~v~~~----~~~~Yl~~F~Wd~aKyp~~~~l~elv~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~~ 153 (257)
-...|+|+ +.++.+ ..|.+-.+.|...+..++..+...-...++++.+|.++
T Consensus 50 vy~~iG~vfv~~~~~e~~-------------~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~~ 105 (107)
T 1fxk_A 50 VYKSSGNILIRVAKDELT-------------EELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEA 105 (107)
T ss_dssp EEEEETTEEEEECHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhHHHHhccHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557874 666666 36888899999999999999999999999999998764
No 18
>3bj4_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, alternative splicing, deafness, disease mutation, glycoprotein, ION transport; 2.00A {Homo sapiens}
Probab=21.02 E-value=1.9e+02 Score=19.26 Aligned_cols=38 Identities=8% Similarity=0.178 Sum_probs=29.5
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025125 109 EAKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNV 146 (257)
Q Consensus 109 ~aKyp~~~~l~elv~~i~~~v~~id~dlk~k~~~Yn~~ 146 (257)
..||+.+.|+.-=+-.+.++++.+|.-|-.-...|+++
T Consensus 6 k~k~~~~~S~~~Rl~rVE~qV~~md~KLd~l~~~~~~~ 43 (49)
T 3bj4_A 6 KSKDRGSNTIGARLNRVEDKVTQLDQRLALITDMLHQL 43 (49)
T ss_dssp ------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888999999999999999999999999999853
Done!