BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025126
(257 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q7T|A Chain A, Rv1170 (Mshb) From Mycobacterium Tuberculosis
pdb|1Q7T|B Chain B, Rv1170 (Mshb) From Mycobacterium Tuberculosis
Length = 328
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 16/79 (20%)
Query: 38 DKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGN----------------AD 81
+ +L V AHPDDES+ TI + TSR +H++ + G AD
Sbjct: 28 ETPRLLFVHAHPDDESLSNGATIAHYTSRGAQVHVVTCTLGEEGEVIGDRWAQLTADHAD 87
Query: 82 GMGNIRKDELHRACAVLKI 100
+G R EL A L +
Sbjct: 88 QLGGYRIGELTAALRALGV 106
>pdb|1Q74|A Chain A, The Crystal Structure Of 1d-Myo-Inosityl 2-Acetamido-2-
Deoxy-Alpha-D-Glucopyranoside Deacetylase (Mshb)
pdb|1Q74|B Chain B, The Crystal Structure Of 1d-Myo-Inosityl 2-Acetamido-2-
Deoxy-Alpha-D-Glucopyranoside Deacetylase (Mshb)
pdb|1Q74|C Chain C, The Crystal Structure Of 1d-Myo-Inosityl 2-Acetamido-2-
Deoxy-Alpha-D-Glucopyranoside Deacetylase (Mshb)
pdb|1Q74|D Chain D, The Crystal Structure Of 1d-Myo-Inosityl 2-Acetamido-2-
Deoxy-Alpha-D-Glucopyranoside Deacetylase (Mshb)
Length = 303
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 16/79 (20%)
Query: 38 DKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGN----------------AD 81
+ +L V AHPDDES+ TI + TSR +H++ + G AD
Sbjct: 3 ETPRLLFVHAHPDDESLSNGATIAHYTSRGAQVHVVTCTLGEEGEVIGDRWAQLTADHAD 62
Query: 82 GMGNIRKDELHRACAVLKI 100
+G R EL A L +
Sbjct: 63 QLGGYRIGELTAALRALGV 81
>pdb|4EWL|A Chain A, Crystal Structure Of Mshb With Glycerol And Acetate Bound
In The Active Site
pdb|4EWL|B Chain B, Crystal Structure Of Mshb With Glycerol And Acetate Bound
In The Active Site
Length = 299
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 16/79 (20%)
Query: 38 DKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGN----------------AD 81
+ +L V AHPDDES+ TI + TSR +H++ + G AD
Sbjct: 3 ETPRLLFVHAHPDDESLSNGATIAHYTSRGAQVHVVTCTLGEEGEVIGDRWAQLTADHAD 62
Query: 82 GMGNIRKDELHRACAVLKI 100
+G R EL A L +
Sbjct: 63 QLGGYRIGELTAALRALGV 81
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 147 NYGVSGHCNHRDVHHGICR----SYLNGTSERNIEAWELMTTNILRKYSGP 193
+G G C HR + +C+ ++ NGT ++I + N + K++GP
Sbjct: 45 GFGYKGSCFHRIIPGFMCQGGNFTHCNGTGGKSIYGEKFEDENFILKHTGP 95
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 147 NYGVSGHCNHRDVHHGICR----SYLNGTSERNIEAWELMTTNILRKYSGP 193
+G G C HR + +C+ ++ NGT ++I + N + K++GP
Sbjct: 44 GFGYKGSCFHRIIPGFMCQGGDFTHHNGTGGKSIYGEKFEDENFILKHTGP 94
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 147 NYGVSGHCNHRDVHHGICR----SYLNGTSERNIEAWELMTTNILRKYSGP 193
+G G C HR + +C+ ++ NGT ++I + N + K++GP
Sbjct: 45 GFGYKGSCFHRIIPGFMCQGGNFTHHNGTGGKSIYGEKFEDENFILKHTGP 95
>pdb|2B1U|A Chain A, Solution Structure Of Calmodulin-Like Skin Protein C
Terminal Domain
Length = 71
Score = 28.9 bits (63), Expect = 2.7, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 79 NADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQD-GFDKLWNHKSLAKIVEEE 133
+ DG G+I DEL RA A L PL Q ++ ++ D D N++ A+++ +E
Sbjct: 16 DQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEEFARMLAQE 71
>pdb|1ZXJ|A Chain A, Crystal Structure Of The Hypthetical Mycoplasma Protein,
Mpn555
pdb|1ZXJ|B Chain B, Crystal Structure Of The Hypthetical Mycoplasma Protein,
Mpn555
pdb|1ZXJ|C Chain C, Crystal Structure Of The Hypthetical Mycoplasma Protein,
Mpn555
pdb|1ZXJ|D Chain D, Crystal Structure Of The Hypthetical Mycoplasma Protein,
Mpn555
Length = 218
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/95 (17%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 86 IRKDELHRACAVLKIP--LEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLII 143
I+ DE+ + P +EQ + L F+D + H+ ++++ + +C+++ I+
Sbjct: 40 IQYDEVIEVERIFADPAFIEQHRQRILASFKDAKESALYHELTHIVIKDNLFSCAMNAIV 99
Query: 144 TFDNYGVSGHCNHRDVHHGICRSYLNGTSERNIEA 178
+ + + ++V G+ R + G + ++A
Sbjct: 100 GYFEFNID-EAELKNVMEGLKRDVIQGAEDNTVQA 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,149,910
Number of Sequences: 62578
Number of extensions: 325452
Number of successful extensions: 628
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 621
Number of HSP's gapped (non-prelim): 15
length of query: 257
length of database: 14,973,337
effective HSP length: 97
effective length of query: 160
effective length of database: 8,903,271
effective search space: 1424523360
effective search space used: 1424523360
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)