Query 025126
Match_columns 257
No_of_seqs 236 out of 1366
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 04:15:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025126.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025126hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ixd_A LMBE-related protein; h 100.0 3.2E-36 1.1E-40 264.3 18.3 166 39-235 3-181 (242)
2 1q74_A 1D-MYO-inosityl 2-aceta 100.0 6.3E-36 2.1E-40 270.4 18.7 130 39-170 4-161 (303)
3 1uan_A Hypothetical protein TT 100.0 7.7E-36 2.6E-40 259.5 17.6 164 40-234 2-178 (227)
4 3dfi_A Pseudoaglycone deacetyl 100.0 1.8E-36 6.3E-41 269.8 14.0 188 38-236 6-233 (270)
5 3dff_A Teicoplanin pseudoaglyc 100.0 3.7E-36 1.3E-40 268.3 13.4 188 38-236 6-236 (273)
6 3ih5_A Electron transfer flavo 92.1 0.65 2.2E-05 39.0 8.7 89 40-146 4-99 (217)
7 3tsa_A SPNG, NDP-rhamnosyltran 88.8 2 7E-05 37.8 9.4 35 40-74 2-36 (391)
8 1f0k_A MURG, UDP-N-acetylgluco 86.7 2.8 9.7E-05 36.2 8.8 86 40-146 7-104 (364)
9 2iw1_A Lipopolysaccharide core 85.0 3.6 0.00012 35.5 8.6 84 40-147 1-89 (374)
10 3otg_A CALG1; calicheamicin, T 84.7 2.2 7.6E-05 37.7 7.2 39 37-75 18-56 (412)
11 1efv_A Electron transfer flavo 84.5 5.4 0.00018 35.4 9.6 92 40-146 2-94 (315)
12 1vgv_A UDP-N-acetylglucosamine 84.4 3.8 0.00013 35.7 8.6 91 40-145 1-93 (384)
13 3oti_A CALG3; calicheamicin, T 82.2 7.8 0.00027 34.2 9.8 39 37-75 18-56 (398)
14 3ia7_A CALG4; glycosysltransfe 81.7 6 0.00021 34.6 8.8 35 40-74 5-39 (402)
15 4fzr_A SSFS6; structural genom 81.4 12 0.00041 32.9 10.7 38 37-75 13-51 (398)
16 3rsc_A CALG2; TDP, enediyne, s 80.6 6.4 0.00022 34.8 8.6 38 37-74 18-55 (415)
17 3okp_A GDP-mannose-dependent a 80.5 14 0.00047 31.9 10.7 90 38-147 3-95 (394)
18 1efp_B ETF, protein (electron 79.5 7.4 0.00025 33.3 8.3 83 48-146 36-121 (252)
19 1o97_C Electron transferring f 79.0 5 0.00017 34.6 7.1 82 47-146 35-120 (264)
20 1v4v_A UDP-N-acetylglucosamine 78.9 5.4 0.00018 34.7 7.5 92 40-145 6-98 (376)
21 4gi5_A Quinone reductase; prot 76.7 1.9 6.6E-05 37.6 3.8 39 37-77 20-63 (280)
22 3auf_A Glycinamide ribonucleot 76.3 21 0.0007 30.0 10.1 95 30-146 13-109 (229)
23 3k4h_A Putative transcriptiona 74.8 22 0.00077 29.3 10.0 99 62-180 125-226 (292)
24 1efv_B Electron transfer flavo 74.5 17 0.00057 31.1 9.1 83 48-146 39-124 (255)
25 3fet_A Electron transfer flavo 73.7 20 0.0007 28.4 8.9 74 39-145 3-76 (166)
26 3o74_A Fructose transport syst 73.1 36 0.0012 27.6 11.3 98 61-180 113-213 (272)
27 4hg6_A Cellulose synthase subu 72.8 34 0.0012 33.9 12.1 61 40-100 140-214 (802)
28 2x6q_A Trehalose-synthase TRET 71.5 3.5 0.00012 36.5 4.2 37 37-78 38-81 (416)
29 3m9w_A D-xylose-binding peripl 71.3 41 0.0014 28.1 11.0 101 62-179 116-219 (313)
30 1o97_D Electron transferring f 70.1 8.5 0.00029 34.1 6.4 85 42-146 3-95 (320)
31 3beo_A UDP-N-acetylglucosamine 69.6 24 0.00084 30.2 9.3 93 39-145 8-102 (375)
32 2iyf_A OLED, oleandomycin glyc 68.5 30 0.001 30.5 9.9 34 40-74 8-42 (430)
33 3av3_A Phosphoribosylglycinami 68.4 44 0.0015 27.5 10.1 85 40-146 4-90 (212)
34 3ksm_A ABC-type sugar transpor 67.7 48 0.0016 26.9 11.4 93 67-181 126-220 (276)
35 3dzc_A UDP-N-acetylglucosamine 67.3 68 0.0023 28.5 12.7 92 40-145 26-118 (396)
36 3ot5_A UDP-N-acetylglucosamine 67.2 26 0.00089 31.4 9.2 92 41-145 29-121 (403)
37 2h0a_A TTHA0807, transcription 66.6 51 0.0017 26.8 11.0 99 61-180 107-214 (276)
38 3h75_A Periplasmic sugar-bindi 66.1 44 0.0015 28.6 10.2 94 68-181 144-240 (350)
39 3d8u_A PURR transcriptional re 65.4 39 0.0013 27.5 9.4 99 62-180 114-215 (275)
40 3gv0_A Transcriptional regulat 64.6 59 0.002 26.8 11.1 99 62-180 121-222 (288)
41 1w1z_A Delta-aminolevulinic ac 64.6 30 0.001 30.8 8.5 87 58-146 20-123 (328)
42 2iuy_A Avigt4, glycosyltransfe 64.1 19 0.00064 30.7 7.3 19 129-147 75-93 (342)
43 3e3m_A Transcriptional regulat 63.2 65 0.0022 27.6 10.8 100 61-179 180-283 (355)
44 2o20_A Catabolite control prot 62.8 25 0.00086 30.0 7.9 97 62-180 174-273 (332)
45 1meo_A Phosophoribosylglycinam 62.6 12 0.00042 31.0 5.6 44 93-146 44-87 (209)
46 2ywr_A Phosphoribosylglycinami 61.3 68 0.0023 26.4 10.2 86 40-146 2-88 (216)
47 3s2u_A UDP-N-acetylglucosamine 60.2 34 0.0012 30.0 8.5 18 128-145 82-99 (365)
48 3hcw_A Maltose operon transcri 59.2 35 0.0012 28.4 8.1 97 61-180 124-226 (295)
49 3qk7_A Transcriptional regulat 58.7 31 0.0011 28.7 7.6 79 83-180 140-221 (294)
50 3jvd_A Transcriptional regulat 58.5 41 0.0014 28.8 8.5 97 61-180 167-265 (333)
51 3kbq_A Protein TA0487; structu 58.4 28 0.00096 27.9 6.9 79 71-167 5-88 (172)
52 2pjk_A 178AA long hypothetical 57.5 20 0.00067 28.8 5.8 74 69-156 15-98 (178)
53 3ha2_A NADPH-quinone reductase 56.4 14 0.00047 29.7 4.7 37 40-77 1-38 (177)
54 1jkx_A GART;, phosphoribosylgl 55.7 70 0.0024 26.3 9.1 45 92-146 43-87 (212)
55 2qu7_A Putative transcriptiona 55.7 37 0.0013 28.0 7.6 100 61-180 115-221 (288)
56 1efp_A ETF, protein (electron 55.6 41 0.0014 29.4 8.1 86 42-146 2-90 (307)
57 2h3h_A Sugar ABC transporter, 55.6 90 0.0031 26.0 11.0 78 83-181 137-215 (313)
58 3gxh_A Putative phosphatase (D 55.5 68 0.0023 24.6 9.3 82 43-144 22-103 (157)
59 3g1w_A Sugar ABC transporter; 55.4 87 0.003 25.8 11.0 99 62-181 119-220 (305)
60 3tqq_A Methionyl-tRNA formyltr 54.0 58 0.002 28.5 8.8 85 39-146 2-88 (314)
61 2fvy_A D-galactose-binding per 53.8 65 0.0022 26.6 8.9 86 66-171 138-226 (309)
62 1l6s_A Porphobilinogen synthas 52.9 36 0.0012 30.1 7.0 87 58-146 14-117 (323)
63 3g85_A Transcriptional regulat 52.0 35 0.0012 28.1 6.8 77 84-179 142-221 (289)
64 2rgy_A Transcriptional regulat 51.5 56 0.0019 27.0 8.0 100 61-180 121-223 (290)
65 3l49_A ABC sugar (ribose) tran 51.4 90 0.0031 25.5 9.3 98 62-180 117-222 (291)
66 3l6u_A ABC-type sugar transpor 51.0 87 0.003 25.6 9.2 89 70-180 136-226 (293)
67 3k9c_A Transcriptional regulat 49.9 90 0.0031 25.7 9.1 96 62-179 120-218 (289)
68 2iya_A OLEI, oleandomycin glyc 49.3 55 0.0019 28.8 8.0 35 39-74 12-47 (424)
69 3dbi_A Sugar-binding transcrip 49.1 56 0.0019 27.7 7.8 101 60-180 173-276 (338)
70 1dbq_A Purine repressor; trans 48.5 50 0.0017 27.1 7.2 99 62-180 120-221 (289)
71 3gyb_A Transcriptional regulat 47.6 85 0.0029 25.5 8.5 97 62-181 112-211 (280)
72 3bbl_A Regulatory protein of L 47.6 52 0.0018 27.1 7.2 77 84-180 140-222 (287)
73 2c2x_A Methylenetetrahydrofola 47.5 98 0.0034 26.8 9.0 88 60-161 23-111 (281)
74 4ds3_A Phosphoribosylglycinami 47.5 94 0.0032 25.5 8.6 44 93-146 51-94 (209)
75 2l82_A Designed protein OR32; 47.3 87 0.003 23.5 9.3 77 39-138 77-153 (162)
76 3miz_A Putative transcriptiona 47.3 30 0.001 28.8 5.6 92 61-171 124-220 (301)
77 1pdo_A Mannose permease; phosp 47.1 66 0.0022 24.2 7.1 65 71-150 3-70 (135)
78 1fmt_A Methionyl-tRNA FMet for 46.5 67 0.0023 28.1 7.9 85 39-146 3-89 (314)
79 3clk_A Transcription regulator 45.5 74 0.0025 26.1 7.9 99 62-180 119-219 (290)
80 1w5q_A Delta-aminolevulinic ac 45.2 80 0.0027 28.1 8.0 88 57-146 21-127 (337)
81 3kke_A LACI family transcripti 45.2 56 0.0019 27.2 7.1 99 62-180 125-231 (303)
82 3h5o_A Transcriptional regulat 45.2 1.1E+02 0.0039 25.8 9.2 99 61-179 171-272 (339)
83 3d02_A Putative LACI-type tran 45.2 1.3E+02 0.0043 24.7 12.6 112 49-180 107-221 (303)
84 3kjx_A Transcriptional regulat 44.9 75 0.0026 27.0 8.0 77 84-179 201-280 (344)
85 3lfh_A Manxa, phosphotransfera 43.8 73 0.0025 24.5 6.9 67 69-150 3-73 (144)
86 4fe7_A Xylose operon regulator 43.7 1.7E+02 0.0057 25.7 10.7 77 60-145 131-210 (412)
87 3c3k_A Alanine racemase; struc 43.0 1.1E+02 0.0037 25.1 8.5 95 62-179 118-217 (285)
88 3h5t_A Transcriptional regulat 42.4 1.5E+02 0.0051 25.3 9.6 79 83-179 220-301 (366)
89 1jye_A Lactose operon represso 41.7 1.2E+02 0.0039 26.0 8.7 75 84-179 194-271 (349)
90 3p2o_A Bifunctional protein fo 41.3 1.1E+02 0.0039 26.4 8.5 86 60-159 24-110 (285)
91 1h7n_A 5-aminolaevulinic acid 41.1 1.1E+02 0.0037 27.3 8.3 87 58-146 25-131 (342)
92 1gud_A ALBP, D-allose-binding 41.1 1.5E+02 0.005 24.3 10.0 98 61-179 123-224 (288)
93 3f2v_A General stress protein 40.8 26 0.00088 28.4 4.0 38 40-77 2-40 (192)
94 3q0i_A Methionyl-tRNA formyltr 40.4 69 0.0024 28.1 7.0 85 39-146 7-93 (318)
95 2iks_A DNA-binding transcripti 40.1 73 0.0025 26.2 7.0 98 61-180 131-231 (293)
96 2pbq_A Molybdenum cofactor bio 39.9 64 0.0022 25.6 6.3 40 122-165 52-92 (178)
97 1qpz_A PURA, protein (purine n 39.8 68 0.0023 27.3 6.9 98 62-179 171-271 (340)
98 4b4u_A Bifunctional protein fo 39.5 96 0.0033 27.2 7.7 79 67-159 51-130 (303)
99 3gbv_A Putative LACI-family tr 39.3 1E+02 0.0035 25.2 7.8 98 62-180 127-230 (304)
100 4fs3_A Enoyl-[acyl-carrier-pro 39.1 1.2E+02 0.0041 24.9 8.2 88 37-145 4-93 (256)
101 4af8_A Metacaspase MCA2; hydro 38.8 78 0.0027 28.5 7.2 51 90-140 118-168 (367)
102 2hsg_A Glucose-resistance amyl 38.6 58 0.002 27.5 6.2 89 62-171 171-262 (332)
103 3rfo_A Methionyl-tRNA formyltr 38.4 1.1E+02 0.0037 26.8 8.0 85 39-146 4-90 (317)
104 3cs3_A Sugar-binding transcrip 37.9 1.2E+02 0.0041 24.6 7.9 74 84-179 133-210 (277)
105 1di6_A MOGA, molybdenum cofact 37.9 72 0.0025 25.9 6.3 33 122-156 50-83 (195)
106 1zl0_A Hypothetical protein PA 37.8 1.4E+02 0.0047 26.1 8.5 63 36-100 14-81 (311)
107 4hwg_A UDP-N-acetylglucosamine 36.8 80 0.0027 28.1 7.0 91 40-146 11-102 (385)
108 3bil_A Probable LACI-family tr 36.6 1.8E+02 0.006 24.8 9.1 95 62-179 178-274 (348)
109 1pv8_A Delta-aminolevulinic ac 36.5 75 0.0026 28.2 6.5 87 58-146 14-120 (330)
110 3brq_A HTH-type transcriptiona 36.4 1E+02 0.0035 25.0 7.3 79 83-180 153-234 (296)
111 1mio_B Nitrogenase molybdenum 36.2 2.5E+02 0.0085 25.5 10.5 81 38-145 311-392 (458)
112 4e5s_A MCCFLIKE protein (BA_56 36.1 1E+02 0.0036 27.0 7.6 63 36-100 9-79 (331)
113 1uuy_A CNX1, molybdopterin bio 35.9 73 0.0025 24.9 5.9 40 122-165 55-95 (167)
114 3u7q_B Nitrogenase molybdenum- 35.6 2.6E+02 0.0088 26.2 10.6 82 37-145 362-445 (523)
115 3obk_A Delta-aminolevulinic ac 35.6 90 0.0031 28.0 6.9 88 57-146 29-134 (356)
116 1c3p_A Protein (HDLP (histone 35.3 33 0.0011 31.0 4.1 27 127-155 236-262 (375)
117 1jlj_A Gephyrin; globular alph 35.2 77 0.0026 25.5 6.1 24 122-145 62-85 (189)
118 2fep_A Catabolite control prot 35.2 59 0.002 26.9 5.6 77 84-179 149-228 (289)
119 2x7x_A Sensor protein; transfe 35.2 2E+02 0.0067 24.0 10.9 92 67-180 127-220 (325)
120 1qgu_B Protein (nitrogenase mo 34.9 2.6E+02 0.0089 26.0 10.5 84 37-145 358-441 (519)
121 3rjz_A N-type ATP pyrophosphat 34.7 42 0.0015 28.3 4.5 75 59-145 20-97 (237)
122 2hma_A Probable tRNA (5-methyl 34.2 92 0.0031 27.9 7.0 49 60-111 26-79 (376)
123 3lm8_A Thiamine pyrophosphokin 34.1 1.3E+02 0.0046 24.7 7.5 89 53-163 28-116 (222)
124 2bln_A Protein YFBG; transfera 34.0 48 0.0016 28.9 4.9 82 41-146 2-83 (305)
125 1byk_A Protein (trehalose oper 33.6 1.1E+02 0.0039 24.3 7.0 96 60-180 107-203 (255)
126 4h1h_A LMO1638 protein; MCCF-l 33.1 1.3E+02 0.0043 26.4 7.6 63 36-100 9-79 (327)
127 3ipr_A PTS system, IIA compone 32.7 1.4E+02 0.0049 22.8 7.1 65 71-150 3-70 (150)
128 3hnn_A Putative diflavin flavo 32.4 25 0.00086 29.3 2.7 35 125-165 66-101 (262)
129 3v2g_A 3-oxoacyl-[acyl-carrier 32.1 2.1E+02 0.0073 23.5 9.4 86 37-145 29-116 (271)
130 3egc_A Putative ribose operon 32.0 73 0.0025 26.1 5.6 100 61-181 118-221 (291)
131 1a4i_A Methylenetetrahydrofola 31.7 1.5E+02 0.0052 25.9 7.7 87 60-160 24-115 (301)
132 3tem_A Ribosyldihydronicotinam 31.7 31 0.001 28.6 3.1 37 39-77 1-42 (228)
133 2hl0_A Threonyl-tRNA synthetas 31.2 65 0.0022 25.2 4.6 63 83-149 56-118 (143)
134 1nvm_A HOA, 4-hydroxy-2-oxoval 31.1 2.7E+02 0.0091 24.3 11.0 41 57-100 123-163 (345)
135 2fn9_A Ribose ABC transporter, 30.3 2.2E+02 0.0074 23.0 9.9 91 67-179 128-221 (290)
136 3bed_A PTS system, IIA compone 30.2 1E+02 0.0035 23.4 5.7 66 70-150 6-73 (142)
137 1mkz_A Molybdenum cofactor bio 30.2 2E+02 0.0067 22.5 8.4 73 70-156 11-86 (172)
138 3tb6_A Arabinose metabolism tr 30.1 82 0.0028 25.7 5.6 100 61-179 130-234 (298)
139 3p9x_A Phosphoribosylglycinami 29.9 2.3E+02 0.0078 23.2 10.4 46 91-146 44-89 (211)
140 3kcq_A Phosphoribosylglycinami 29.9 1.5E+02 0.0053 24.3 7.2 39 93-146 52-90 (215)
141 1sfs_A Hypothetical protein; s 29.2 1.5E+02 0.005 25.1 6.9 56 58-113 73-130 (240)
142 4dik_A Flavoprotein; TM0755, e 29.2 17 0.00057 33.2 1.1 36 124-165 75-111 (410)
143 3tqr_A Phosphoribosylglycinami 28.8 2.4E+02 0.0082 23.1 9.4 44 93-146 48-91 (215)
144 2dri_A D-ribose-binding protei 28.7 2.1E+02 0.007 23.1 7.9 74 84-179 138-212 (271)
145 3tla_A MCCF; serine protease, 28.3 93 0.0032 27.9 5.9 60 36-97 40-107 (371)
146 4g81_D Putative hexonate dehyd 28.2 2.5E+02 0.0084 23.5 8.3 84 38-145 8-93 (255)
147 1zz1_A Histone deacetylase-lik 28.0 34 0.0012 30.9 2.9 25 129-155 248-272 (369)
148 3ew8_A HD8, histone deacetylas 27.8 48 0.0016 30.2 3.9 28 126-155 244-271 (388)
149 3lft_A Uncharacterized protein 27.8 2.5E+02 0.0086 23.0 9.2 99 55-180 118-218 (295)
150 3iwt_A 178AA long hypothetical 27.5 2.1E+02 0.007 22.2 7.3 52 91-156 45-98 (178)
151 3mc3_A DSRE/DSRF-like family p 27.5 70 0.0024 24.0 4.3 64 37-100 13-89 (134)
152 3l07_A Bifunctional protein fo 27.1 1.7E+02 0.0059 25.3 7.2 86 60-159 24-111 (285)
153 2vsy_A XCC0866; transferase, g 26.8 3.4E+02 0.012 24.5 9.8 84 37-146 203-290 (568)
154 2der_A TRNA-specific 2-thiouri 26.7 1.4E+02 0.0047 26.8 6.8 62 42-111 21-87 (380)
155 4a69_A Histone deacetylase 3,; 26.6 38 0.0013 30.7 3.0 28 126-155 236-263 (376)
156 3r3s_A Oxidoreductase; structu 26.6 2.8E+02 0.0095 23.1 8.5 86 38-145 48-135 (294)
157 3rfq_A Pterin-4-alpha-carbinol 26.5 1.3E+02 0.0046 24.1 6.0 64 68-145 29-96 (185)
158 1b0a_A Protein (fold bifunctio 26.5 1.4E+02 0.0049 25.8 6.6 86 60-159 23-110 (288)
159 1vl2_A Argininosuccinate synth 26.0 1.3E+02 0.0043 27.7 6.4 79 60-145 31-127 (421)
160 2fhx_A SPM-1; metallo-beta-lac 25.9 28 0.00094 28.3 1.8 18 141-164 72-89 (246)
161 4a5o_A Bifunctional protein fo 25.6 2.8E+02 0.0096 23.9 8.3 86 60-159 25-112 (286)
162 1z7e_A Protein aRNA; rossmann 25.5 98 0.0034 29.5 5.9 72 56-146 12-83 (660)
163 2ioy_A Periplasmic sugar-bindi 25.4 2.7E+02 0.0092 22.5 10.3 96 62-179 115-213 (283)
164 3iuu_A MLRC-like, putative met 25.4 4.2E+02 0.014 24.7 12.0 105 56-168 48-178 (495)
165 3da8_A Probable 5'-phosphoribo 25.3 1.9E+02 0.0063 23.8 6.8 45 92-146 53-97 (215)
166 1g8l_A Molybdopterin biosynthe 25.2 2.2E+02 0.0076 25.7 8.0 58 90-165 208-267 (411)
167 2zo4_A Metallo-beta-lactamase 25.2 68 0.0023 27.0 4.3 33 126-164 45-83 (317)
168 2vqm_A HD4, histone deacetylas 25.2 34 0.0012 31.3 2.4 26 127-154 268-293 (413)
169 4a26_A Putative C-1-tetrahydro 25.1 2E+02 0.0068 25.1 7.3 86 60-159 26-114 (300)
170 3brs_A Periplasmic binding pro 24.9 2.7E+02 0.0092 22.4 9.6 98 61-180 122-222 (289)
171 1tjy_A Sugar transport protein 24.8 3E+02 0.01 22.8 11.1 93 66-180 126-220 (316)
172 3is3_A 17BETA-hydroxysteroid d 24.6 2.9E+02 0.0098 22.5 9.6 86 37-145 16-103 (270)
173 1vbk_A Hypothetical protein PH 24.6 1.1E+02 0.0038 26.5 5.6 81 34-146 174-263 (307)
174 4amg_A Snogd; transferase, pol 24.6 91 0.0031 26.8 5.1 37 37-74 20-57 (400)
175 3ctp_A Periplasmic binding pro 24.6 63 0.0021 27.4 3.9 41 61-102 165-205 (330)
176 3sr3_A Microcin immunity prote 24.5 1.3E+02 0.0044 26.5 6.1 63 36-100 10-80 (336)
177 2qh8_A Uncharacterized protein 24.5 2.9E+02 0.01 22.7 8.2 73 56-145 126-200 (302)
178 2gek_A Phosphatidylinositol ma 24.4 3E+02 0.01 23.2 8.5 95 37-147 18-116 (406)
179 4da9_A Short-chain dehydrogena 24.2 3E+02 0.01 22.7 9.5 86 37-145 27-114 (280)
180 3max_A HD2, histone deacetylas 24.0 46 0.0016 30.0 3.0 27 127-155 236-262 (367)
181 2rjo_A Twin-arginine transloca 23.8 3E+02 0.01 22.9 8.2 107 49-179 116-228 (332)
182 3ksu_A 3-oxoacyl-acyl carrier 23.5 2.1E+02 0.0071 23.4 7.0 88 37-145 9-98 (262)
183 2p10_A MLL9387 protein; putati 23.4 3.2E+02 0.011 23.7 8.1 73 58-145 154-232 (286)
184 2vk2_A YTFQ, ABC transporter p 23.3 2.3E+02 0.0077 23.3 7.2 98 62-179 119-224 (306)
185 1y5e_A Molybdenum cofactor bio 22.8 2.7E+02 0.0091 21.5 8.1 72 71-156 15-89 (169)
186 4fn4_A Short chain dehydrogena 22.7 3.3E+02 0.011 22.6 9.3 85 37-145 5-91 (254)
187 2is8_A Molybdopterin biosynthe 22.6 92 0.0031 24.2 4.2 40 122-165 46-86 (164)
188 3rpe_A MDAB, modulator of drug 22.5 83 0.0028 26.0 4.1 41 37-77 23-70 (218)
189 2pqp_A HD7A, histone deacetyla 22.4 44 0.0015 30.8 2.5 27 128-156 298-324 (421)
190 2gek_A Phosphatidylinositol ma 22.2 80 0.0027 27.0 4.2 14 39-52 52-65 (406)
191 3k94_A Thiamin pyrophosphokina 22.2 1.8E+02 0.006 24.0 6.1 27 136-164 90-116 (223)
192 3iog_A Beta-lactamase; hydrola 22.2 71 0.0024 25.3 3.6 31 127-163 46-80 (227)
193 3i1j_A Oxidoreductase, short c 22.1 3E+02 0.01 21.8 9.6 88 37-145 12-101 (247)
194 4e3z_A Putative oxidoreductase 21.9 3.2E+02 0.011 22.2 9.3 85 38-145 25-111 (272)
195 3s5j_B Ribose-phosphate pyroph 21.8 1.9E+02 0.0065 25.5 6.5 60 37-110 211-274 (326)
196 3fro_A GLGA glycogen synthase; 21.6 1.1E+02 0.0037 26.4 5.0 41 39-79 2-47 (439)
197 4dmm_A 3-oxoacyl-[acyl-carrier 21.5 3.4E+02 0.011 22.2 9.6 85 38-145 27-113 (269)
198 3fwt_A Macrophage migration in 21.5 66 0.0023 24.3 3.1 58 41-106 57-117 (133)
199 3osu_A 3-oxoacyl-[acyl-carrier 21.2 3.2E+02 0.011 21.8 9.3 84 39-145 4-89 (246)
200 4hcj_A THIJ/PFPI domain protei 21.2 72 0.0024 25.3 3.4 41 38-78 6-46 (177)
201 3ihk_A Thiamin pyrophosphokina 21.2 3.4E+02 0.012 22.1 8.2 91 51-162 20-110 (218)
202 4iiu_A 3-oxoacyl-[acyl-carrier 21.0 3.3E+02 0.011 22.0 9.6 86 37-145 24-111 (267)
203 3ijr_A Oxidoreductase, short c 20.9 3.6E+02 0.012 22.3 9.1 85 38-145 46-132 (291)
204 3men_A Acetylpolyamine aminohy 20.8 64 0.0022 29.1 3.2 28 127-156 280-307 (362)
205 3pxx_A Carveol dehydrogenase; 20.8 3.4E+02 0.012 22.0 10.2 93 37-145 8-106 (287)
206 3qi7_A Putative transcriptiona 20.7 4.4E+02 0.015 23.5 8.8 45 57-101 143-190 (371)
207 3m8t_A 'BLR6230 protein; subcl 20.7 69 0.0024 26.5 3.3 19 141-165 97-115 (294)
208 3o38_A Short chain dehydrogena 20.6 3.4E+02 0.011 21.9 8.8 87 37-145 20-108 (266)
209 1mww_A Hypothetical protein HI 20.5 1.5E+02 0.0052 21.6 4.9 61 40-107 36-99 (128)
210 3fwu_A Macrophage migration in 20.5 1.1E+02 0.0037 23.0 4.1 59 40-106 56-117 (133)
211 3q9b_A Acetylpolyamine amidohy 20.3 60 0.002 29.0 2.9 28 127-156 262-289 (341)
212 4e08_A DJ-1 beta; flavodoxin-l 20.3 1.1E+02 0.0036 24.0 4.2 39 38-77 4-42 (190)
No 1
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=100.00 E-value=3.2e-36 Score=264.34 Aligned_cols=166 Identities=13% Similarity=0.112 Sum_probs=135.5
Q ss_pred CCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCC--chHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCC
Q 025126 39 KKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADG--MGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDG 116 (257)
Q Consensus 39 ~~~vL~i~aHPDDE~l~~Ggtl~~~~~~G~~V~vv~lT~G~~~~--~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg 116 (257)
++++|+|+||||||+|||||||++++++|.+|++||+|+|+.+. .+++|++|+++||++||+ +.+.+|++||..
T Consensus 3 ~~~vL~v~aHPDDe~l~~Ggtia~~~~~G~~V~vv~lT~G~~g~~~~~~~R~~E~~~A~~~LGv--~~~~~L~~~D~~-- 78 (242)
T 2ixd_A 3 GLHILAFGAHADDVEIGMAGTIAKYTKQGYEVGICDLTEADLSSNGTIELRKEEAKVAARIMGV--KTRLNLAMPDRG-- 78 (242)
T ss_dssp CCSEEEEESSTTHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCSSSCHHHHHHHHHHHHHHHTC--CEEEEEEECTTC--
T ss_pred CccEEEEEeCCChHHHhHHHHHHHHHHCCCeEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHcCC--CeEEECCCCCCC--
Confidence 46899999999999999999999999999999999999999863 568999999999999999 457899999864
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHHHHHccCC-----------CCccEEEEecchh
Q 025126 117 FDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGICRSYLNGTS-----------ERNIEAWELMTTN 185 (257)
Q Consensus 117 ~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~~-----------~~~~~~ye~~s~~ 185 (257)
+ .+.+++++.|+++|++++||+|+||+ +.|+|+||+++++++.+|+..++. +..++.|+..
T Consensus 79 ~---~~~~~~~~~l~~~ir~~~PdvV~t~~--~~d~H~DH~~~~~~v~~A~~~a~~~~~~~~~~~~~~~~l~~y~~~--- 150 (242)
T 2ixd_A 79 L---YMKEEYIREIVKVIRTYKPKLVFAPY--YEDRHPDHANCAKLVEEAIFSAGIRKYMPELSPHRVESFYNYMIN--- 150 (242)
T ss_dssp C---CCCHHHHHHHHHHHHHHCCSEEEEEC--SCSSSHHHHHHHHHHHHHHHHHTCTTSSTTSCCCCCSEEEEECCS---
T ss_pred C---CChHHHHHHHHHHHHHcCCCEEEECC--CCCCChhHHHHHHHHHHHHHHcCCccccCcCCCCCcceEEEEecc---
Confidence 2 24578899999999999999999995 568999999999999998754431 1222223210
Q ss_pred hhhhcCCCchhHHHhhhhhcccCCceeEEEcCCHHHHHHHHHhchhhhhH
Q 025126 186 ILRKYSGPLDIWLSILSATQYRRGQVHCLLNEHPKKSFLAMSQHHSQWVW 235 (257)
Q Consensus 186 ~~~~y~~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~K~~Am~~H~SQ~~w 235 (257)
.. ..++..++++...++|++||+||+||+.+
T Consensus 151 -----~~--------------~~p~~~vdis~~~~~K~~Al~~h~SQ~~~ 181 (242)
T 2ixd_A 151 -----GF--------------HKPNFCIDISEYLSIKVEALEAYESQFST 181 (242)
T ss_dssp -----SC--------------CCCSEEEECGGGHHHHHHHHHTCHHHHCC
T ss_pred -----CC--------------CCCCEEEECcHHHHHHHHHHHHHHHhccC
Confidence 00 01244566777789999999999999985
No 2
>1q74_A 1D-MYO-inosityl 2-acetamido-2-deoxy-alpha-D- glucopyranoside deacetylase (MSHB); rossmann fold, zinc aminohydrolase; HET: PE4; 1.70A {Mycobacterium tuberculosis} SCOP: c.134.1.1 PDB: 1q7t_A*
Probab=100.00 E-value=6.3e-36 Score=270.45 Aligned_cols=130 Identities=24% Similarity=0.270 Sum_probs=114.2
Q ss_pred CCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCC----------------CchHHHHHHHHHHHHHcCCCC
Q 025126 39 KKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNAD----------------GMGNIRKDELHRACAVLKIPL 102 (257)
Q Consensus 39 ~~~vL~i~aHPDDE~l~~Ggtl~~~~~~G~~V~vv~lT~G~~~----------------~~~~~R~~E~~~A~~~LGv~~ 102 (257)
.+++|+|+||||||+|||||||++++++|.+|++||+|+|+.+ +++++|++|+++||++||+
T Consensus 4 ~~~vL~v~AHPDDe~l~~ggtla~~~~~G~~V~vv~lT~Ge~g~~~~~~~~~~~~~~~~~l~~~R~~E~~~A~~~LGv-- 81 (303)
T 1q74_A 4 TPRLLFVHAHPDDESLSNGATIAHYTSRGAQVHVVTCTLGEEGEVIGDRWAQLTADHADQLGGYRIGELTAALRALGV-- 81 (303)
T ss_dssp CCEEEEEESSTTHHHHHHHHHHHHHHHTTCEEEEEESCCCTTCCCSSSTTGGGSTTTTCCHHHHHHHHHHHHHHHTTC--
T ss_pred CCeEEEEEeCCchHHHhHHHHHHHHHHCCCcEEEEEEcCCCCCCCCChhhhccccccHHHHHHHHHHHHHHHHHHhCC--
Confidence 4689999999999999999999999999999999999999853 3468999999999999999
Q ss_pred CcEEEcc----CCCCCCC-------cc-ccCChHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHHHHHcc
Q 025126 103 EQVKVLD----LVDFQDG-------FD-KLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGICRSYLNG 170 (257)
Q Consensus 103 ~~~~~l~----~~d~~dg-------~~-~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~A~~~~ 170 (257)
.++.||+ ++|..-. .. ..|+.+++++.|+++|++++||+|+|+|++|.|+|+||+++++++.+|+..+
T Consensus 82 ~~~~~L~~~~~~~D~~l~~~~~~~~p~~~~~~~~~~~~~l~~~ir~~rP~vV~t~~p~g~~~HpDH~~~~~~~~~A~~~a 161 (303)
T 1q74_A 82 SAPIYLGGAGRWRDSGMAGTDQRSQRRFVDADPRQTVGALVAIIRELRPHVVVTYDPNGGYGHPDHVHTHTVTTAAVAAA 161 (303)
T ss_dssp CCCEETTSTTSSBCCCCC----CCSCBGGGSCHHHHHHHHHHHHHHHCCSEEEEECTTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CeeEECCCCCcCCCCCCCCCccccCcccccCCHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 5678998 8875310 00 2357889999999999999999999999999999999999999999998654
No 3
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1
Probab=100.00 E-value=7.7e-36 Score=259.53 Aligned_cols=164 Identities=13% Similarity=0.070 Sum_probs=133.4
Q ss_pred CcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCC--chHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCc
Q 025126 40 KNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADG--MGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGF 117 (257)
Q Consensus 40 ~~vL~i~aHPDDE~l~~Ggtl~~~~~~G~~V~vv~lT~G~~~~--~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~ 117 (257)
.++|+|+||||||++||||||+++.++|.+|+++|+|+|+.+. .+++|++|+++||++||+ +.+.+|++||..
T Consensus 2 ~~vL~v~aHPDDe~l~~ggtia~~~~~G~~v~vv~lT~G~~g~~~~~~~R~~E~~~A~~~lG~--~~~~~l~~~D~~--- 76 (227)
T 1uan_A 2 LDLLVVAPHPDDGELGCGGTLARAKAEGLSTGILDLTRGEMGSKGTPEEREKEVAEASRILGL--DFRGNLGFPDGG--- 76 (227)
T ss_dssp EEEEEEESSTTHHHHHHHHHHHHHHHTTCCEEEEEEECCTTTCCSCHHHHHHHHHHHHHHHTC--SEEEEEEECTTC---
T ss_pred ceEEEEEeCCCcHHHhHHHHHHHHHhCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhcCC--CeEEECCCCCCC---
Confidence 4799999999999999999999999999999999999999863 468999999999999999 567899999853
Q ss_pred cccCChHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHHHHHccCCC-----------CccEEEEecchhh
Q 025126 118 DKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGICRSYLNGTSE-----------RNIEAWELMTTNI 186 (257)
Q Consensus 118 ~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~~~-----------~~~~~ye~~s~~~ 186 (257)
..+.+++++.|.++|++++||+|+||+ +.|+|+||+++++++.+|+..++.+ +.++.|+..
T Consensus 77 --l~~~~~~~~~l~~~ir~~~P~~V~t~~--~~d~H~DH~~~~~~v~~A~~~a~~~~~~~~~~~~~~~~l~~~~~~---- 148 (227)
T 1uan_A 77 --LADVPEQRLKLAQALRRLRPRVVFAPL--EADRHPDHTAASRLAVAAVHLAGLRKAPLEGEPFRVERLFFYPGN---- 148 (227)
T ss_dssp --CCCCHHHHHHHHHHHHHHCEEEEEEEC--SCCSSHHHHHHHHHHHHHHHHHTCTTSSCSSCCCCCSEEEEECCS----
T ss_pred --CCChHHHHHHHHHHHHHhCCCEEEeCC--CCCCChHHHHHHHHHHHHHHHcCCCcccCCCCCCccceEEEEecc----
Confidence 224578899999999999999999995 5789999999999999997644321 122222210
Q ss_pred hhhcCCCchhHHHhhhhhcccCCceeEEEcCCHHHHHHHHHhchhhhh
Q 025126 187 LRKYSGPLDIWLSILSATQYRRGQVHCLLNEHPKKSFLAMSQHHSQWV 234 (257)
Q Consensus 187 ~~~y~~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~K~~Am~~H~SQ~~ 234 (257)
. ...++..++++...++|++||+||+||+.
T Consensus 149 ----~--------------~~~p~~~vdis~~~~~K~~Al~~h~SQ~~ 178 (227)
T 1uan_A 149 ----H--------------PFAPSFLVKISAFIDQWEAAVLAYRSQFT 178 (227)
T ss_dssp ----S--------------CCCCSEEEECGGGHHHHHHHHHTCHHHHC
T ss_pred ----C--------------CCCCCEEEECcHHHHHHHHHHHHHHHhcc
Confidence 0 00124455677778999999999999987
No 4
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus}
Probab=100.00 E-value=1.8e-36 Score=269.83 Aligned_cols=188 Identities=15% Similarity=0.169 Sum_probs=135.4
Q ss_pred CCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCC--------------------chHHHHHHHHHHHHH
Q 025126 38 DKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADG--------------------MGNIRKDELHRACAV 97 (257)
Q Consensus 38 ~~~~vL~i~aHPDDE~l~~Ggtl~~~~~~G~~V~vv~lT~G~~~~--------------------~~~~R~~E~~~A~~~ 97 (257)
..+++|+|+||||||+|||||||++++++|.+|++|++|+|+.+. ++++|++|+.+||++
T Consensus 6 ~~~rvLvv~aHPDDe~l~~GGtia~~~~~G~~V~vv~~T~Ge~g~~~~~~a~~~~~~~g~~~~~~l~~~R~~E~~~A~~~ 85 (270)
T 3dfi_A 6 DRTRILAISPHLDDAVLSVGASLAQAEQDGGKVTVFTVFAGSAAPPYSPAAERFHARWGLSPTEDAPLRRRNEDIAALDQ 85 (270)
T ss_dssp CCSEEEEEESSTTHHHHHHHHHHHHHHHTTCEEEEEESSCCCCCSSCCHHHHHHHHHHTCCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCchHHHhhHHHHHHHHhCCCeEEEEEEeCCCCCCCcchhhhhcccccCCChHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999999999999999998752 578999999999999
Q ss_pred cCCCCCcEEEcc-----CCCCC--C-C----ccccCC-------hHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHH
Q 025126 98 LKIPLEQVKVLD-----LVDFQ--D-G----FDKLWN-------HKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRD 158 (257)
Q Consensus 98 LGv~~~~~~~l~-----~~d~~--d-g----~~~~~~-------~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~ 158 (257)
||++..++.|+| +||.. + . +...+. .+++.+.|+++|++++||+|+|| ++.|+||||++
T Consensus 86 LGv~~~~~~fld~~~~~~pDg~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~l~~~ir~~~PdvV~t~--~~~d~HpDH~~ 163 (270)
T 3dfi_A 86 LGAGHRHGRFLDAIYRRSPDGQWLLHHNEGSMVRQQSPANNHDLVAAIREDIESMIAECDPTLVLTC--VAIGKHPDHKA 163 (270)
T ss_dssp HTCEEEECCCCCGGGC-----------------------CHHHHHHHHHHHHHHHHHHHCCSEEEEE--CCTTCCHHHHH
T ss_pred cCCCccccccCCccccCCCCCCcccccCccccccccCcccccchHHHHHHHHHHHHHHcCCCEEEeC--CCCCCChhHHH
Confidence 999543345675 66542 0 0 000111 25889999999999999999999 78999999999
Q ss_pred HHHHHHHHHHccCCCCccEEEEecchhhhhhcCCCchhHHHhhhhhcccCCceeEEEcCC-HHHHHHHHHhchhhhhHH
Q 025126 159 VHHGICRSYLNGTSERNIEAWELMTTNILRKYSGPLDIWLSILSATQYRRGQVHCLLNEH-PKKSFLAMSQHHSQWVWF 236 (257)
Q Consensus 159 ~~~av~~A~~~~~~~~~~~~ye~~s~~~~~~y~~~~d~~~~~~~~~~~~~~~~~~~v~~~-~~~K~~Am~~H~SQ~~w~ 236 (257)
+++++.+|+...+ ..+.+||.....++.+.... .+ ... ....+..+.++.. .++|++||+||+||+.++
T Consensus 164 ~~~a~~~A~~~~~--~~~~~~e~~p~~~~~~~~~~--~~-~~~----~~~~p~~vdis~~~~~~K~~Al~ay~SQ~~~~ 233 (270)
T 3dfi_A 164 TRDATLLAARERG--IPLRLWQDLPYAAYSQDLAE--LP-DGL----RLGSPELSFVDEEARTRKFQAMKHYATQLSVL 233 (270)
T ss_dssp HHHHHHHHHHHTT--CCEEEECCTTHHHHSCCCCC--CC-TTE----EECCCEEEECCHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHcC--CCeeEecccceEeccCCChh--hc-CCC----cCCCCeEEeCCHHHHHHHHHHHHHhhhhcccc
Confidence 9999999986653 24567876543333221110 00 000 0001233445554 789999999999999864
No 5
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=100.00 E-value=3.7e-36 Score=268.30 Aligned_cols=188 Identities=16% Similarity=0.179 Sum_probs=135.8
Q ss_pred CCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCC--------------------chHHHHHHHHHHHHH
Q 025126 38 DKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADG--------------------MGNIRKDELHRACAV 97 (257)
Q Consensus 38 ~~~~vL~i~aHPDDE~l~~Ggtl~~~~~~G~~V~vv~lT~G~~~~--------------------~~~~R~~E~~~A~~~ 97 (257)
..+++|+|+||||||+|||||||++++++|.+|++||+|+|+.+. ++++|++|+.+||++
T Consensus 6 ~~~rvLvv~aHPDDe~lg~GGtia~~~~~G~~V~vv~~T~G~~g~~~~~~~~~~~~~~g~~~~~~l~~~R~~E~~~A~~~ 85 (273)
T 3dff_A 6 GATRLLAISPHLDDAVLSFGAGLAQAAQDGANVLVYTVFAGAAQPPYSPAAQRMHTIWGLAPDDDAVLYRRKEDIAALDH 85 (273)
T ss_dssp --CEEEEEESSTTHHHHHHHHHHHHHHHTTCEEEEEETTCCCCCSSCCHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCChHHHhHHHHHHHHHHCCCcEEEEEEeCCCCCCCCchhhhhcccccCCChhhHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999999999999999998742 578999999999999
Q ss_pred cCCCCCcEEEcc-----CCCCCC---Ccc---ccCC-----------hHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCch
Q 025126 98 LKIPLEQVKVLD-----LVDFQD---GFD---KLWN-----------HKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCN 155 (257)
Q Consensus 98 LGv~~~~~~~l~-----~~d~~d---g~~---~~~~-----------~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~D 155 (257)
||++..++.|+| +||..- ++. ..|. .+++.+.|+++|++++||+|+|| ++.|+|||
T Consensus 86 LGv~~~~l~~ld~~~~~~pDg~~~~~~~~~~~~l~~~~~~p~~~~~~~~~l~~~l~~~ir~~~PdvV~t~--~~~d~HpD 163 (273)
T 3dff_A 86 LRVAHRHGRFLDSIYRKLPDGRWLTAHVEGRQKLAVNDHSPDSDHDLVGEVADDIRSIIDEFDPTLVVTC--AAIGEHPD 163 (273)
T ss_dssp TTCEEEECCCCCGGGCBCTTSSBSEECCTTCSSCEECCCCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEE--CCTTCCHH
T ss_pred hCCCceeecccccccccCCCCccccccccchhhhhccccCcccccchHHHHHHHHHHHHHHcCCCEEEEC--CCCCCChH
Confidence 999533334555 555320 000 1221 36889999999999999999999 88999999
Q ss_pred HHHHHHHHHHHHHccCCCCccEEEEecchhhhhhcCCCchhHHHhhhhhcccCCceeEEEcCC-HHHHHHHHHhchhhhh
Q 025126 156 HRDVHHGICRSYLNGTSERNIEAWELMTTNILRKYSGPLDIWLSILSATQYRRGQVHCLLNEH-PKKSFLAMSQHHSQWV 234 (257)
Q Consensus 156 H~~~~~av~~A~~~~~~~~~~~~ye~~s~~~~~~y~~~~d~~~~~~~~~~~~~~~~~~~v~~~-~~~K~~Am~~H~SQ~~ 234 (257)
|+++++++.+|+...+ ..+.+||.....++.+-. ...+.. + . ...+..+.++.. .++|++||+||+||+.
T Consensus 164 H~~~~~a~~~A~~~~~--~~~~~~e~~~~~~~~~~~--~~~~~~-~---~-~~~p~~v~i~~~~~~~K~~Al~ay~SQ~~ 234 (273)
T 3dff_A 164 HEATRDAALFATHEKN--VPVRLWEDLPYAVFKSGA--VELPQG-F---R-LGSADVSSVKPEMRSQKFQAVERYSSQMV 234 (273)
T ss_dssp HHHHHHHHHHHHHHHT--CCEEEECCTTGGGTSCCC--CCCCTT-E---E-ECCCEECCBCHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHHHcC--CCEEEecccchhhcCCCC--cccccc-c---c-cCCCeEEECCHHHHHHHHHHHHHHhhhCC
Confidence 9999999999986554 245678754333322111 000000 0 0 001222334443 6899999999999998
Q ss_pred HH
Q 025126 235 WF 236 (257)
Q Consensus 235 w~ 236 (257)
++
T Consensus 235 ~l 236 (273)
T 3dff_A 235 LL 236 (273)
T ss_dssp HH
T ss_pred cc
Confidence 64
No 6
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=92.12 E-value=0.65 Score=39.05 Aligned_cols=89 Identities=9% Similarity=0.129 Sum_probs=59.0
Q ss_pred CcEEEEecCchh-------hhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCC
Q 025126 40 KNVLLVIAHPDD-------ESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVD 112 (257)
Q Consensus 40 ~~vL~i~aHPDD-------E~l~~Ggtl~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d 112 (257)
+.+|+++-|.|. |.++.+-.|+. +.|.+|+++++-.+ .. +..+.+..+|+ ++++.++.+.
T Consensus 4 ~~ilV~~E~~~g~l~~~s~ell~~A~~La~--~~g~~v~av~~G~~-~~--------~~~~~~~~~Ga--d~v~~v~~~~ 70 (217)
T 3ih5_A 4 NNLFVYCEIEEGIVADVSLELLTKGRSLAN--ELNCQLEAVVAGTG-LK--------EIEKQILPYGV--DKLHVFDAEG 70 (217)
T ss_dssp CCEEEECCEETTEECHHHHHHHHHHHHHHH--HHTCCEEEEEEESC-CT--------TTHHHHGGGTC--SEEEEEECGG
T ss_pred ccEEEEEECcCCEECHHHHHHHHHHHHHHH--hcCCeEEEEEECCC-HH--------HHHHHHHhcCC--CEEEEecCcc
Confidence 469999999654 33433332222 23788988888543 11 12223344699 7888888765
Q ss_pred CCCCccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 025126 113 FQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (257)
Q Consensus 113 ~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (257)
+. .++.+.....|.+++++.+||+|++..
T Consensus 71 ~~-----~~~~~~~a~~l~~~i~~~~p~~Vl~g~ 99 (217)
T 3ih5_A 71 LY-----PYTSLPHTSILVNLFKEEQPQICLMGA 99 (217)
T ss_dssp GS-----SCCHHHHHHHHHHHHHHHCCSEEEEEC
T ss_pred cc-----cCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 42 235677888999999999999999983
No 7
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=88.82 E-value=2 Score=37.80 Aligned_cols=35 Identities=23% Similarity=0.165 Sum_probs=26.6
Q ss_pred CcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEE
Q 025126 40 KNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILC 74 (257)
Q Consensus 40 ~~vL~i~aHPDDE~l~~Ggtl~~~~~~G~~V~vv~ 74 (257)
+|||+++.----....+-++...|.++|++|.+++
T Consensus 2 MrIl~~~~~~~gh~~~~~~la~~L~~~GheV~v~~ 36 (391)
T 3tsa_A 2 MRVLVVPLPYPTHLMAMVPLCWALQASGHEVLIAA 36 (391)
T ss_dssp CEEEEECCSCHHHHHTTHHHHHHHHHTTCEEEEEE
T ss_pred cEEEEEcCCCcchhhhHHHHHHHHHHCCCEEEEec
Confidence 57887774333445678888999999999998875
No 8
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=86.65 E-value=2.8 Score=36.24 Aligned_cols=86 Identities=7% Similarity=0.091 Sum_probs=46.1
Q ss_pred CcEEEEecCchhhhcchHHHHH-------HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCC
Q 025126 40 KNVLLVIAHPDDESMFFSPTIN-------YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVD 112 (257)
Q Consensus 40 ~~vL~i~aHPDDE~l~~Ggtl~-------~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d 112 (257)
+|||+++. +.||... .+.+.|++|.+++...+. . . ......|+ ++..+..+.
T Consensus 7 mkIl~~~~-------~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~-----~--~----~~~~~~g~---~~~~~~~~~ 65 (364)
T 1f0k_A 7 KRLMVMAG-------GTGGHVFPGLAVAHHLMAQGWQVRWLGTADRM-----E--A----DLVPKHGI---EIDFIRISG 65 (364)
T ss_dssp CEEEEECC-------SSHHHHHHHHHHHHHHHTTTCEEEEEECTTST-----H--H----HHGGGGTC---EEEECCCCC
T ss_pred cEEEEEeC-------CCccchhHHHHHHHHHHHcCCEEEEEecCCcc-----h--h----hhccccCC---ceEEecCCc
Confidence 68998873 2344433 345689999887654321 1 0 11223466 344454432
Q ss_pred CCC-Ccc----ccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 025126 113 FQD-GFD----KLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (257)
Q Consensus 113 ~~d-g~~----~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (257)
... +.. ..+..-.....+.+.+++.+||+|+++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvv~~~~ 104 (364)
T 1f0k_A 66 LRGKGIKALIAAPLRIFNAWRQARAIMKAYKPDVVLGMG 104 (364)
T ss_dssp CTTCCHHHHHTCHHHHHHHHHHHHHHHHHHCCSEEEECS
T ss_pred cCcCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 211 000 0001112345678889999999999984
No 9
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=84.96 E-value=3.6 Score=35.55 Aligned_cols=84 Identities=8% Similarity=0.035 Sum_probs=48.3
Q ss_pred CcEEEEecCchhhhcchHH-----HHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCC
Q 025126 40 KNVLLVIAHPDDESMFFSP-----TINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQ 114 (257)
Q Consensus 40 ~~vL~i~aHPDDE~l~~Gg-----tl~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~ 114 (257)
+||++++.+.-. .|.+. ....+.+.|++|++++...+.. .. -|+ +++.+..+...
T Consensus 1 MkIl~i~~~~~~--~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~--~~-------------~~~---~v~~~~~~~~~ 60 (374)
T 2iw1_A 1 MIVAFCLYKYFP--FGGLQRDFMRIASTVAARGHHVRVYTQSWEGD--CP-------------KAF---ELIQVPVKSHT 60 (374)
T ss_dssp -CEEEECSEECT--TCHHHHHHHHHHHHHHHTTCCEEEEESEECSC--CC-------------TTC---EEEECCCCCSS
T ss_pred CeEEEEEeecCC--CcchhhHHHHHHHHHHhCCCeEEEEecCCCCC--CC-------------CCc---EEEEEccCccc
Confidence 478888876221 22211 2445567899999998764321 11 155 45555543221
Q ss_pred CCccccCChHHHHHHHHHHHHhcCCCEEEeeCC
Q 025126 115 DGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDN 147 (257)
Q Consensus 115 dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~ 147 (257)
...........+.+.+++.+||+|++++.
T Consensus 61 ----~~~~~~~~~~~l~~~i~~~~~Dvv~~~~~ 89 (374)
T 2iw1_A 61 ----NHGRNAEYYAWVQNHLKEHPADRVVGFNK 89 (374)
T ss_dssp ----HHHHHHHHHHHHHHHHHHSCCSEEEESSC
T ss_pred ----chhhHHHHHHHHHHHHhccCCCEEEEecC
Confidence 01112344567888899999999998864
No 10
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=84.69 E-value=2.2 Score=37.72 Aligned_cols=39 Identities=13% Similarity=0.134 Sum_probs=29.7
Q ss_pred CCCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEE
Q 025126 37 GDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCM 75 (257)
Q Consensus 37 ~~~~~vL~i~aHPDDE~l~~Ggtl~~~~~~G~~V~vv~l 75 (257)
...+|||+++..-.=....+-+....|.++|++|.+++-
T Consensus 18 ~~~MrIl~~~~~~~Gh~~~~~~la~~L~~~GheV~v~~~ 56 (412)
T 3otg_A 18 GRHMRVLFASLGTHGHTYPLLPLATAARAAGHEVTFATG 56 (412)
T ss_dssp CCSCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEEC
T ss_pred cceeEEEEEcCCCcccHHHHHHHHHHHHHCCCEEEEEcc
Confidence 556799998866555556677788888899999888763
No 11
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=84.52 E-value=5.4 Score=35.37 Aligned_cols=92 Identities=15% Similarity=0.122 Sum_probs=55.8
Q ss_pred CcEEEEecCchhhhcchHH-HHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCcc
Q 025126 40 KNVLLVIAHPDDESMFFSP-TINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFD 118 (257)
Q Consensus 40 ~~vL~i~aHPDDE~l~~Gg-tl~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~ 118 (257)
+++|+++-|.|...--..- +|....+-+.+|+++++-.+ . .+.+++++..+|+ ++++..+.+.+.
T Consensus 2 m~~lv~~e~~~g~l~~~~~eal~aA~~La~~V~av~~G~~----~----~~~~~~a~~a~Ga--Dkv~~v~d~~l~---- 67 (315)
T 1efv_A 2 QSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTK----C----DKVAQDLCKVAGI--AKVLVAQHDVYK---- 67 (315)
T ss_dssp CEEEEECCEETTEECTHHHHHHHHHHTTTSEEEEEEEESC----C----HHHHHHHHHSTTC--CEEEEEECGGGT----
T ss_pred ceEEEEEEccCCCcCHHHHHHHHHHHHhcCcEEEEEECCc----h----HHHHHHHHHhcCC--CEEEEecCchhc----
Confidence 3478888886643211111 12222232337777766432 1 1123344467899 788888865432
Q ss_pred ccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 025126 119 KLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (257)
Q Consensus 119 ~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (257)
..+.+...+.|.+++++.+||+|++..
T Consensus 68 -~~~~~~~a~~La~li~~~~pdlVL~g~ 94 (315)
T 1efv_A 68 -GLLPEELTPLILATQKQFNYTHICAGA 94 (315)
T ss_dssp -TCCHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 235677888999999999999999983
No 12
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=84.36 E-value=3.8 Score=35.68 Aligned_cols=91 Identities=14% Similarity=0.193 Sum_probs=50.5
Q ss_pred CcEEEEecCchhhhcchHHHHHHHHhCCC-cEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCcc
Q 025126 40 KNVLLVIAHPDDESMFFSPTINYLTSRRH-NLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFD 118 (257)
Q Consensus 40 ~~vL~i~aHPDDE~l~~Ggtl~~~~~~G~-~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~ 118 (257)
+|||+++..+ -|.+.+.+.+..+.++|. ++.+++. |...+.. .+ ..+..|+... .-++.... +.
T Consensus 1 mkIl~v~~~~-~~~~~~~~l~~~L~~~g~~~~~v~~~--~~~~~~~----~~---~~~~~~~~~~--~~~~~~~~--~~- 65 (384)
T 1vgv_A 1 MKVLTVFGTR-PEAIKMAPLVHALAKDPFFEAKVCVT--AQHREML----DQ---VLKLFSIVPD--YDLNIMQP--GQ- 65 (384)
T ss_dssp CEEEEEECSH-HHHHHHHHHHHHHHHSTTCEEEEEEC--CSSGGGG----HH---HHHHHTCCCS--EECCCCST--TS-
T ss_pred CeEEEEeccc-HHHHHHHHHHHHHHhCCCCceEEEEc--CCCHHHH----HH---HHHHcCCCCC--cceecCCC--Cc-
Confidence 4788887764 344556888888999984 7776653 2221111 11 1223566210 22332211 10
Q ss_pred ccCC-hHHHHHHHHHHHHhcCCCEEEee
Q 025126 119 KLWN-HKSLAKIVEEEVVNCSIDLIITF 145 (257)
Q Consensus 119 ~~~~-~~~l~~~l~~~i~~~~Pd~V~t~ 145 (257)
.... .......+.+++++.+||+|+++
T Consensus 66 ~~~~~~~~~~~~l~~~l~~~~pDvv~~~ 93 (384)
T 1vgv_A 66 GLTEITCRILEGLKPILAEFKPDVVLVH 93 (384)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 0101 12335678889999999999998
No 13
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=82.23 E-value=7.8 Score=34.20 Aligned_cols=39 Identities=15% Similarity=0.086 Sum_probs=27.8
Q ss_pred CCCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEE
Q 025126 37 GDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCM 75 (257)
Q Consensus 37 ~~~~~vL~i~aHPDDE~l~~Ggtl~~~~~~G~~V~vv~l 75 (257)
...+|||+++.----....|-++...|.++|++|.+++-
T Consensus 18 ~~~MrIl~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~ 56 (398)
T 3oti_A 18 GRHMRVLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVA 56 (398)
T ss_dssp -CCCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEES
T ss_pred hhcCEEEEEcCCCcchHhHHHHHHHHHHHCCCEEEEecc
Confidence 455799988632222345678888899999999988764
No 14
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=81.75 E-value=6 Score=34.58 Aligned_cols=35 Identities=11% Similarity=0.163 Sum_probs=24.8
Q ss_pred CcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEE
Q 025126 40 KNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILC 74 (257)
Q Consensus 40 ~~vL~i~aHPDDE~l~~Ggtl~~~~~~G~~V~vv~ 74 (257)
++||+++.---=....|-+....|.++|++|++++
T Consensus 5 ~~il~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~ 39 (402)
T 3ia7_A 5 RHILFANVQGHGHVYPSLGLVSELARRGHRITYVT 39 (402)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEEeCCCCcccccHHHHHHHHHhCCCEEEEEc
Confidence 37777654322345667778888889999998876
No 15
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=81.38 E-value=12 Score=32.92 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=27.4
Q ss_pred CCCCcEEEEe-cCchhhhcchHHHHHHHHhCCCcEEEEEE
Q 025126 37 GDKKNVLLVI-AHPDDESMFFSPTINYLTSRRHNLHILCM 75 (257)
Q Consensus 37 ~~~~~vL~i~-aHPDDE~l~~Ggtl~~~~~~G~~V~vv~l 75 (257)
...+|||+++ +.+.+ ...+-++...|.++|++|.+++-
T Consensus 13 ~~~MrIl~~~~~~~gh-~~~~~~La~~L~~~GheV~v~~~ 51 (398)
T 4fzr_A 13 GSHMRILVIAGCSEGF-VMPLVPLSWALRAAGHEVLVAAS 51 (398)
T ss_dssp --CCEEEEECCSSHHH-HGGGHHHHHHHHHTTCEEEEEEE
T ss_pred CCceEEEEEcCCCcch-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 5567899885 44443 56678889999999999988763
No 16
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=80.59 E-value=6.4 Score=34.84 Aligned_cols=38 Identities=13% Similarity=0.136 Sum_probs=27.0
Q ss_pred CCCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEE
Q 025126 37 GDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILC 74 (257)
Q Consensus 37 ~~~~~vL~i~aHPDDE~l~~Ggtl~~~~~~G~~V~vv~ 74 (257)
...++||+++.---=...-|-+....|.++|++|++++
T Consensus 18 ~~m~rIl~~~~~~~GHv~p~l~La~~L~~~Gh~V~v~~ 55 (415)
T 3rsc_A 18 RHMAHLLIVNVASHGLILPTLTVVTELVRRGHRVSYVT 55 (415)
T ss_dssp -CCCEEEEECCSCHHHHGGGHHHHHHHHHTTCEEEEEE
T ss_pred ccCCEEEEEeCCCccccccHHHHHHHHHHCCCEEEEEe
Confidence 34467888765323345677788888999999988877
No 17
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=80.49 E-value=14 Score=31.86 Aligned_cols=90 Identities=9% Similarity=0.044 Sum_probs=49.7
Q ss_pred CCCcEEEEecCchhhhcchHHH-HHHHHh--CCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCC
Q 025126 38 DKKNVLLVIAHPDDESMFFSPT-INYLTS--RRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQ 114 (257)
Q Consensus 38 ~~~~vL~i~aHPDDE~l~~Ggt-l~~~~~--~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~ 114 (257)
..++||+|+...-.. .|...+ +..+++ +|++|.+++.+.+. ....+. -...|+ .+...+...
T Consensus 3 ~~mkIl~v~~~~~p~-~gG~~~~~~~l~~~L~g~~v~v~~~~~~~------~~~~~~---~~~~~~-----~~~~~~~~~ 67 (394)
T 3okp_A 3 ASRKTLVVTNDFPPR-IGGIQSYLRDFIATQDPESIVVFASTQNA------EEAHAY---DKTLDY-----EVIRWPRSV 67 (394)
T ss_dssp -CCCEEEEESCCTTS-CSHHHHHHHHHHTTSCGGGEEEEEECSSH------HHHHHH---HTTCSS-----EEEEESSSS
T ss_pred CCceEEEEeCccCCc-cchHHHHHHHHHHHhcCCeEEEEECCCCc------cchhhh---ccccce-----EEEEccccc
Confidence 357899999743222 222222 333333 58999999887652 111111 123444 333332211
Q ss_pred CCccccCChHHHHHHHHHHHHhcCCCEEEeeCC
Q 025126 115 DGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDN 147 (257)
Q Consensus 115 dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~ 147 (257)
.+........+.+++++.+||+|+++++
T Consensus 68 -----~~~~~~~~~~l~~~~~~~~~Dvv~~~~~ 95 (394)
T 3okp_A 68 -----MLPTPTTAHAMAEIIREREIDNVWFGAA 95 (394)
T ss_dssp -----CCSCHHHHHHHHHHHHHTTCSEEEESSC
T ss_pred -----cccchhhHHHHHHHHHhcCCCEEEECCc
Confidence 1233456678899999999999998753
No 18
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=79.47 E-value=7.4 Score=33.28 Aligned_cols=83 Identities=17% Similarity=0.151 Sum_probs=50.1
Q ss_pred CchhhhcchHHHHHHHHhCCC--cEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEcc-CCCCCCCccccCChH
Q 025126 48 HPDDESMFFSPTINYLTSRRH--NLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLD-LVDFQDGFDKLWNHK 124 (257)
Q Consensus 48 HPDDE~l~~Ggtl~~~~~~G~--~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~-~~d~~dg~~~~~~~~ 124 (257)
.|.|+..- ..-.++.++|. +|+++++-.. ..+|..+.+-.+|+ ++.+.++ .+.+.. ..+..
T Consensus 36 np~d~~Al--e~A~~Lke~g~~~~V~av~~G~~--------~a~~~lr~ala~Ga--D~vi~v~~d~~~~~----~~~~~ 99 (252)
T 1efp_B 36 NPFDEIAV--EEAIRLKEKGQAEEIIAVSIGVK--------QAAETLRTALAMGA--DRAILVVAADDVQQ----DIEPL 99 (252)
T ss_dssp CHHHHHHH--HHHHHHHTTTSCSEEEEEEEESG--------GGHHHHHHHHHHTC--SEEEEEECCSSTTC----CCCHH
T ss_pred CHHHHHHH--HHHHHHHhcCCCceEEEEEeCCh--------hHHHHHHHHHhcCC--CEEEEEecChhhcc----cCCHH
Confidence 56665421 12234555565 7777666421 12233333344699 7788887 554311 12566
Q ss_pred HHHHHHHHHHHhcCCCEEEeeC
Q 025126 125 SLAKIVEEEVVNCSIDLIITFD 146 (257)
Q Consensus 125 ~l~~~l~~~i~~~~Pd~V~t~d 146 (257)
.....|.+++++..||+|++..
T Consensus 100 ~~a~~La~~i~~~~~dlVl~G~ 121 (252)
T 1efp_B 100 AVAKILAAVARAEGTELIIAGK 121 (252)
T ss_dssp HHHHHHHHHHHHHTCSEEEEES
T ss_pred HHHHHHHHHHHhcCCCEEEEcC
Confidence 7788899999998999999985
No 19
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=79.05 E-value=5 Score=34.59 Aligned_cols=82 Identities=12% Similarity=0.075 Sum_probs=49.8
Q ss_pred cCchhhh-cchHHHHHHHHh-CCC--cEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCC
Q 025126 47 AHPDDES-MFFSPTINYLTS-RRH--NLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWN 122 (257)
Q Consensus 47 aHPDDE~-l~~Ggtl~~~~~-~G~--~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~ 122 (257)
-.|.|+. +..+ .++.+ .|. +|+++++ |.. ..+|..+.+-.+|+ ++.+.++.+.+. ..+
T Consensus 35 lnp~d~~ale~A---~~Lke~~g~~~~V~av~~--G~~------~~~~~lr~ala~Ga--D~vi~v~d~~~~-----~~~ 96 (264)
T 1o97_C 35 LNEWDDFSLEEA---MKIKESSDTDVEVVVVSV--GPD------RVDESLRKCLAKGA--DRAVRVWDDAAE-----GSD 96 (264)
T ss_dssp ECHHHHHHHHHH---HHHHHHCSSCCEEEEEEE--SCG------GGHHHHHHHHHTTC--SEEEEECCGGGT-----TCC
T ss_pred cCHHHHHHHHHH---HHHHHhcCCCceEEEEEe--Cch------hHHHHHHHHHhcCC--CEEEEEcCcccc-----cCC
Confidence 4566654 3222 23433 254 6766655 421 12233333344699 788888755432 135
Q ss_pred hHHHHHHHHHHHHhcCCCEEEeeC
Q 025126 123 HKSLAKIVEEEVVNCSIDLIITFD 146 (257)
Q Consensus 123 ~~~l~~~l~~~i~~~~Pd~V~t~d 146 (257)
.......|.+++++.+||+|++..
T Consensus 97 ~~~~a~~La~~i~~~~~dlVl~G~ 120 (264)
T 1o97_C 97 AIVVGRILTEVIKKEAPDMVFAGV 120 (264)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEES
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcC
Confidence 667788899999999999999985
No 20
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=78.91 E-value=5.4 Score=34.72 Aligned_cols=92 Identities=15% Similarity=0.183 Sum_probs=47.9
Q ss_pred CcEEEEecCchhhhcchHHHHHHHHhC-CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCcc
Q 025126 40 KNVLLVIAHPDDESMFFSPTINYLTSR-RHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFD 118 (257)
Q Consensus 40 ~~vL~i~aHPDDE~l~~Ggtl~~~~~~-G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~ 118 (257)
+|||+++.++. +.......+..+.+. |+++.+++ | |.. . . . .....+.+|+... ..++... .+..
T Consensus 6 mkIl~v~~~~~-~~~~~~~l~~~L~~~~g~~v~~~~-~-~~~--~-~-~---~~~~~~~~~~~~~--~~~~~~~--~~~~ 71 (376)
T 1v4v_A 6 KRVVLAFGTRP-EATKMAPVYLALRGIPGLKPLVLL-T-GQH--R-E-Q---LRQALSLFGIQED--RNLDVMQ--ERQA 71 (376)
T ss_dssp EEEEEEECSHH-HHHHHHHHHHHHHTSTTEEEEEEE-C-SSC--H-H-H---HHHHHHTTTCCCS--EECCCCS--SCCC
T ss_pred eEEEEEEeccH-HHHHHHHHHHHHHhCCCCceEEEE-c-CCc--H-H-H---HHHHHHHcCCCcc--cccccCC--CCcc
Confidence 58999886643 334456666677776 66766554 2 321 1 1 1 1122334676210 1222211 1110
Q ss_pred ccCChHHHHHHHHHHHHhcCCCEEEee
Q 025126 119 KLWNHKSLAKIVEEEVVNCSIDLIITF 145 (257)
Q Consensus 119 ~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (257)
...........+.+++++.+||+|+++
T Consensus 72 ~~~~~~~~~~~l~~~l~~~~pDvv~~~ 98 (376)
T 1v4v_A 72 LPDLAARILPQAARALKEMGADYVLVH 98 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 000011334678889999999999998
No 21
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=76.69 E-value=1.9 Score=37.64 Aligned_cols=39 Identities=23% Similarity=0.375 Sum_probs=27.5
Q ss_pred CCCCcEEEEecCchhhhcchHHHHH-----HHHhCCCcEEEEEEeC
Q 025126 37 GDKKNVLLVIAHPDDESMFFSPTIN-----YLTSRRHNLHILCMSN 77 (257)
Q Consensus 37 ~~~~~vL~i~aHPDDE~l~~Ggtl~-----~~~~~G~~V~vv~lT~ 77 (257)
.+.++||+|.+||+.+. +...|+ .+.++|++|.++-|-.
T Consensus 20 m~~MKiLII~aHP~~~S--~n~aL~~~~~~~l~~~G~eV~v~DLy~ 63 (280)
T 4gi5_A 20 FQSMKVLLIYAHPEPRS--LNGALKNFAIRHLQQAGHEVQVSDLYA 63 (280)
T ss_dssp --CCEEEEEECCSCTTS--HHHHHHHHHHHHHHHTTCEEEEEETTT
T ss_pred hhCCeEEEEEeCCCCcc--HHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 56679999999999775 344443 3456899999987743
No 22
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=76.34 E-value=21 Score=30.01 Aligned_cols=95 Identities=7% Similarity=0.120 Sum_probs=51.1
Q ss_pred ccccccCCCCCcEEEEecCchhhhcchHHHHHHHHhC--CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEE
Q 025126 30 NAAFLTTGDKKNVLLVIAHPDDESMFFSPTINYLTSR--RHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKV 107 (257)
Q Consensus 30 ~~~~~~~~~~~~vL~i~aHPDDE~l~~Ggtl~~~~~~--G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~ 107 (257)
.++.......+|+++++.--++ ++-..|..+.+. +.+|..| +|+-.. .. ..+.|+..|++ +..
T Consensus 13 ~~~~~~~~~~~rI~~l~SG~g~---~~~~~l~~l~~~~~~~~I~~V-vt~~~~-~~-------~~~~A~~~gIp---~~~ 77 (229)
T 3auf_A 13 GENLYFQGHMIRIGVLISGSGT---NLQAILDGCREGRIPGRVAVV-ISDRAD-AY-------GLERARRAGVD---ALH 77 (229)
T ss_dssp SBSSSCBTTCEEEEEEESSCCH---HHHHHHHHHHTTSSSEEEEEE-EESSTT-CH-------HHHHHHHTTCE---EEE
T ss_pred cccccccCCCcEEEEEEeCCcH---HHHHHHHHHHhCCCCCeEEEE-EcCCCc-hH-------HHHHHHHcCCC---EEE
Confidence 4443333444688887544332 134556665554 3455444 455321 11 24567788993 444
Q ss_pred ccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 025126 108 LDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (257)
Q Consensus 108 l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (257)
++..++. +.++.-+.+.+.+++++||+|++..
T Consensus 78 ~~~~~~~-------~r~~~~~~~~~~l~~~~~Dliv~ag 109 (229)
T 3auf_A 78 MDPAAYP-------SRTAFDAALAERLQAYGVDLVCLAG 109 (229)
T ss_dssp CCGGGSS-------SHHHHHHHHHHHHHHTTCSEEEESS
T ss_pred ECccccc-------chhhccHHHHHHHHhcCCCEEEEcC
Confidence 4432221 2233345567888899999999874
No 23
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=74.81 E-value=22 Score=29.33 Aligned_cols=99 Identities=18% Similarity=0.142 Sum_probs=56.0
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCC
Q 025126 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SID 140 (257)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~Pd 140 (257)
.+.+.|++ .+++++..........|.+-..++++..|++........ ..|+.+...+.+.+++++. +||
T Consensus 125 ~L~~~G~~-~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~ 194 (292)
T 3k4h_A 125 YLISLGHK-QIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILH---------FDFSRESGQQAVEELMGLQQPPT 194 (292)
T ss_dssp HHHHTTCC-CEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEE---------CCSSHHHHHHHHHHHHTSSSCCS
T ss_pred HHHHCCCc-eEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChheEEe---------cCCCHHHHHHHHHHHHcCCCCCc
Confidence 44566765 344444332223456788888999988887432111111 1235566677788888765 788
Q ss_pred EEEeeCCCCCCCCchHHHHHHHHHHHHHccCC--CCccEEEE
Q 025126 141 LIITFDNYGVSGHCNHRDVHHGICRSYLNGTS--ERNIEAWE 180 (257)
Q Consensus 141 ~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~~--~~~~~~ye 180 (257)
.|++.+ |.. +..+.+|+.+.+. ++++.+.-
T Consensus 195 ai~~~~--------d~~--a~g~~~al~~~g~~vP~di~vig 226 (292)
T 3k4h_A 195 AIMATD--------DLI--GLGVLSALSKKGFVVPKDVSIVS 226 (292)
T ss_dssp EEEESS--------HHH--HHHHHHHHHHTTCCTTTTCEEEE
T ss_pred EEEEcC--------hHH--HHHHHHHHHHhCCCCCCeEEEEE
Confidence 888772 333 3345566665543 35665543
No 24
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=74.46 E-value=17 Score=31.12 Aligned_cols=83 Identities=10% Similarity=0.071 Sum_probs=49.7
Q ss_pred CchhhhcchHHHHHHHHhCCC--cEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEcc-CCCCCCCccccCChH
Q 025126 48 HPDDESMFFSPTINYLTSRRH--NLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLD-LVDFQDGFDKLWNHK 124 (257)
Q Consensus 48 HPDDE~l~~Ggtl~~~~~~G~--~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~-~~d~~dg~~~~~~~~ 124 (257)
.|.|+..- ..-.++.++|. +|+++++-.. ..+|..+.+-.+|+ ++.+.++ .+.+. ...+..
T Consensus 39 np~d~~Al--e~A~~Lke~g~~~~V~av~~G~~--------~a~~~lr~ala~Ga--D~vi~v~~d~~~~----~~~~~~ 102 (255)
T 1efv_B 39 NPFCEIAV--EEAVRLKEKKLVKEVIAVSCGPA--------QCQETIRTALAMGA--DRGIHVEVPPAEA----ERLGPL 102 (255)
T ss_dssp CHHHHHHH--HHHHHHHHTTSCSEEEEEEEEST--------THHHHHHHHHHHTC--SEEEEEECCHHHH----TTCCHH
T ss_pred CHHHHHHH--HHHHHHHhcCCCceEEEEEeCCh--------hHHHHHHHHHhcCC--CEEEEEecChhhc----ccCCHH
Confidence 56665421 12234555566 7777666432 12333333344699 6788877 44320 112456
Q ss_pred HHHHHHHHHHHhcCCCEEEeeC
Q 025126 125 SLAKIVEEEVVNCSIDLIITFD 146 (257)
Q Consensus 125 ~l~~~l~~~i~~~~Pd~V~t~d 146 (257)
.....|.+++++.+||+|++..
T Consensus 103 ~~A~~La~~i~~~~~dlVl~G~ 124 (255)
T 1efv_B 103 QVARVLAKLAEKEKVDLVLLGK 124 (255)
T ss_dssp HHHHHHHHHHHHHTCSEEEEES
T ss_pred HHHHHHHHHHHhcCCCEEEEeC
Confidence 7788899999998999999985
No 25
>3fet_A Electron transfer flavoprotein subunit alpha RELA protein; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: MSE; 2.05A {Thermoplasma acidophilum}
Probab=73.72 E-value=20 Score=28.42 Aligned_cols=74 Identities=12% Similarity=0.073 Sum_probs=45.7
Q ss_pred CCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCcc
Q 025126 39 KKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFD 118 (257)
Q Consensus 39 ~~~vL~i~aHPDDE~l~~Ggtl~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~ 118 (257)
.+++|+++-|++ .+ --+...++.+.+|+++++-.++. +.+|+ ++++..+ ++ .
T Consensus 3 ~M~vlV~~E~~~-~~----~Ell~~ar~~g~v~av~~G~~~~---------------~~~Ga--d~v~~v~-~~---~-- 54 (166)
T 3fet_A 3 AMKFLTVSDDMN-FL----RQVNTLVAGKGDMDSVIIGEGDA---------------KGLGS--KVLYRAK-KG---T-- 54 (166)
T ss_dssp SEEEEEEESSHH-HH----HHHHHHHGGGEEEEEEEESCCCC---------------TTCCC--SEEEEEC-TT---C--
T ss_pred ccEEEEEEcCcc-HH----HHHHHhhccCCcEEEEEECcchH---------------HHcCC--CEEEEeC-CC---C--
Confidence 368999999854 21 11222233334777777743311 11398 7788887 32 1
Q ss_pred ccCChHHHHHHHHHHHHhcCCCEEEee
Q 025126 119 KLWNHKSLAKIVEEEVVNCSIDLIITF 145 (257)
Q Consensus 119 ~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (257)
..+...+.|.++++ +||+|++.
T Consensus 55 ---~~e~~a~~l~~~~~--~p~~Vl~g 76 (166)
T 3fet_A 55 ---PFDAVSEGILKIAG--NYDYIAIG 76 (166)
T ss_dssp ---CHHHHHHHHHHHHT--TCSEEEEE
T ss_pred ---ChHHHHHHHHHHHc--CCCEEEEc
Confidence 23566777888887 99999988
No 26
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=73.11 E-value=36 Score=27.62 Aligned_cols=98 Identities=10% Similarity=0.093 Sum_probs=56.9
Q ss_pred HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcC--
Q 025126 61 NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCS-- 138 (257)
Q Consensus 61 ~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~-- 138 (257)
..+.+.|++= +.+++..........|.+-..++++..|++ ...... ..|+.+...+.+.+++++..
T Consensus 113 ~~L~~~G~~~-i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~---~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~ 180 (272)
T 3o74_A 113 ASLLSSAPRS-IALIGARPELSVSQARAGGFDEALQGYTGE---VRRYQG--------EAFSRECGQRLMQQLIDDLGGL 180 (272)
T ss_dssp HHHHTTCCSE-EEEEEECTTSHHHHHHHHHHHHHTTTCCSE---EEEEEE--------SSSSHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCcE-EEEEecCCCCccHHHHHHHHHHHHHHcCCC---hheeec--------CCCCHHHHHHHHHHHHhcCCCC
Confidence 3455667652 333332222234567888889998888873 222111 12455666778888888774
Q ss_pred CCEEEeeCCCCCCCCchHHHHHHHHHHHHHccC-CCCccEEEE
Q 025126 139 IDLIITFDNYGVSGHCNHRDVHHGICRSYLNGT-SERNIEAWE 180 (257)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~-~~~~~~~ye 180 (257)
|+.|++.+ | ..+..+.+|+.+.+ .++++.+.-
T Consensus 181 ~~ai~~~~--------d--~~a~g~~~al~~~g~vp~di~vvg 213 (272)
T 3o74_A 181 PDALVTTS--------Y--VLLQGVFDTLQARPVDSRQLQLGT 213 (272)
T ss_dssp CSEEEESS--------H--HHHHHHHHHHHTSCGGGCCCEEEE
T ss_pred CcEEEEeC--------c--hHHHHHHHHHHHcCCCccceEEEE
Confidence 89999872 2 23455666676655 245555543
No 27
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=72.77 E-value=34 Score=33.90 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=34.7
Q ss_pred CcEEEEecCchhhhcchHHHHHHHHhCCC---cEEEEEEeCCCCCCch-----------HHHHHHHHHHHHHcCC
Q 025126 40 KNVLLVIAHPDDESMFFSPTINYLTSRRH---NLHILCMSNGNADGMG-----------NIRKDELHRACAVLKI 100 (257)
Q Consensus 40 ~~vL~i~aHPDDE~l~~Ggtl~~~~~~G~---~V~vv~lT~G~~~~~~-----------~~R~~E~~~A~~~LGv 100 (257)
.++-++.|--+.+.--...+|..+.++.. +..++++.||+.++.. +.+.+++++.++..|+
T Consensus 140 P~VSViIPtyNe~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~~~~~v 214 (802)
T 4hg6_A 140 PTVDILVPSYNEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCRELGV 214 (802)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CcEEEEEEECCCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHHHhcCc
Confidence 35544444434332223667888876543 3678888898754321 1245566666666666
No 28
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=71.47 E-value=3.5 Score=36.51 Aligned_cols=37 Identities=11% Similarity=0.041 Sum_probs=25.6
Q ss_pred CCCCcEEEEecCchhhhcchHH-------HHHHHHhCCCcEEEEEEeCC
Q 025126 37 GDKKNVLLVIAHPDDESMFFSP-------TINYLTSRRHNLHILCMSNG 78 (257)
Q Consensus 37 ~~~~~vL~i~aHPDDE~l~~Gg-------tl~~~~~~G~~V~vv~lT~G 78 (257)
...++||++.+.+ ..|| ....+.+.|++|.+++.+.+
T Consensus 38 ~~~mkIl~v~~~~-----~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~ 81 (416)
T 2x6q_A 38 LKGRSFVHVNSTS-----FGGGVAEILHSLVPLLRSIGIEARWFVIEGP 81 (416)
T ss_dssp TTTCEEEEEESCS-----SSSTHHHHHHHHHHHHHHTTCEEEEEECCCC
T ss_pred hhccEEEEEeCCC-----CCCCHHHHHHHHHHHHHhCCCeEEEEEccCC
Confidence 4567999999886 2233 23345678999998887643
No 29
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=71.29 E-value=41 Score=28.15 Aligned_cols=101 Identities=12% Similarity=0.124 Sum_probs=60.1
Q ss_pred HHH-hCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc--C
Q 025126 62 YLT-SRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC--S 138 (257)
Q Consensus 62 ~~~-~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~--~ 138 (257)
.+. +.|++ .+++++..........|.+...++++..|..+ ++.+.... ....|+.+...+.+.+++++. +
T Consensus 116 ~L~~~~G~~-~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~ 188 (313)
T 3m9w_A 116 ALVDIVPQG-NYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSG-KIKVVGDQ-----WVDGWLPENALKIMENALTANNNK 188 (313)
T ss_dssp HHHHHCSSE-EEEEEESCTTCHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE-----ECGGGCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhCCCC-cEEEEECCCCCccHHHHHHHHHHHHHhhccCC-CEEEEeec-----cCCCcCHHHHHHHHHHHHHhCCCC
Confidence 344 67776 56666543333345678888899988874211 23332210 011356677778888899875 7
Q ss_pred CCEEEeeCCCCCCCCchHHHHHHHHHHHHHccCCCCccEEE
Q 025126 139 IDLIITFDNYGVSGHCNHRDVHHGICRSYLNGTSERNIEAW 179 (257)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~~~~~~~~y 179 (257)
|+.|++.+ | ..+..+.+|+.+.+...++.+.
T Consensus 189 ~~ai~~~~--------d--~~a~g~~~al~~~G~~~di~vi 219 (313)
T 3m9w_A 189 IDAVVASN--------D--ATAGGAIQALSAQGLSGKVAIS 219 (313)
T ss_dssp CCEEEESS--------H--HHHHHHHHHHHTTTCTTTSEEC
T ss_pred eeEEEECC--------C--chHHHHHHHHHHcCCCCCcEEE
Confidence 89999873 2 3445566777766554455544
No 30
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=70.12 E-value=8.5 Score=34.12 Aligned_cols=85 Identities=11% Similarity=0.172 Sum_probs=53.6
Q ss_pred EEEEecCchh-------hhcchHHHHHHHHhCC-CcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCC
Q 025126 42 VLLVIAHPDD-------ESMFFSPTINYLTSRR-HNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDF 113 (257)
Q Consensus 42 vL~i~aHPDD-------E~l~~Ggtl~~~~~~G-~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~ 113 (257)
+|+++-|.|- |.+..+ .++.+.| .+|+++++-.+ . . .+++++..+|+ ++++..+.+.+
T Consensus 3 ilv~~e~~~g~l~~~~~eal~~A---~~L~e~g~~~V~av~~G~~-----~---~-~~~~~a~a~Ga--Dkv~~v~d~~l 68 (320)
T 1o97_D 3 ILVIAEHRRNDLRPVSLELIGAA---NGLKKSGEDKVVVAVIGSQ-----A---D-AFVPALSVNGV--DELVVVKGSSI 68 (320)
T ss_dssp EEEECCEETTEECTHHHHHHHHH---HHHCSSTTCEEEEEEESTT-----G---G-GGHHHHCBTTC--SEEEEEECSCS
T ss_pred EEEEEeCcCCCcCHHHHHHHHHH---HHHhhCCCCcEEEEEECCc-----H---H-HHHHHHHhcCC--ceEEEEeCccc
Confidence 6777777554 333222 2232225 47777766432 1 1 22334566799 78888886653
Q ss_pred CCCccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 025126 114 QDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (257)
Q Consensus 114 ~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (257)
+ .+.+...+.|.+++++.+||+|++..
T Consensus 69 --~----~~~~~~a~~La~~i~~~~pdlVL~g~ 95 (320)
T 1o97_D 69 --D----FDPDVFEASVSALIAAHNPSVVLLPH 95 (320)
T ss_dssp --S----CCHHHHHHHHHHHHHHHCCSEEEEEC
T ss_pred --C----CCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 1 25677788899999999999999983
No 31
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=69.59 E-value=24 Score=30.19 Aligned_cols=93 Identities=10% Similarity=0.135 Sum_probs=45.5
Q ss_pred CCcEEEEecCchhhhcchHHHHHHHHhC-C-CcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCC
Q 025126 39 KKNVLLVIAHPDDESMFFSPTINYLTSR-R-HNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDG 116 (257)
Q Consensus 39 ~~~vL~i~aHPDDE~l~~Ggtl~~~~~~-G-~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg 116 (257)
.++|++++.... +..+....+..+.+. | +++.++ +.|... + ..++ ..+..|++.. .-+.... .+
T Consensus 8 ~mkIl~v~~~~~-~~~~~~~l~~~L~~~~~~~~v~~~--~~~~~~---~-~~~~---~~~~~~~~~~--~~~~~~~--~~ 73 (375)
T 3beo_A 8 RLKVMTIFGTRP-EAIKMAPLVLELQKHPEKIESIVT--VTAQHR---Q-MLDQ---VLSIFGITPD--FDLNIMK--DR 73 (375)
T ss_dssp CEEEEEEECSHH-HHHHHHHHHHHHTTCTTTEEEEEE--ECCSSS---H-HHHH---HHHHHTCCCS--EECCCCC--TT
T ss_pred CceEEEEecCcH-HHHHHHHHHHHHHhCCCCCCeEEE--EcCCCH---H-HHHH---HHHHcCCCCc--cccccCC--Cc
Confidence 468999875532 334455666677665 3 444333 333221 1 1111 2233676321 1121110 01
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCEEEee
Q 025126 117 FDKLWNHKSLAKIVEEEVVNCSIDLIITF 145 (257)
Q Consensus 117 ~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (257)
....+........+.+++++.+||+|+++
T Consensus 74 ~~~~~~~~~~~~~l~~~l~~~~pDvv~~~ 102 (375)
T 3beo_A 74 QTLIDITTRGLEGLDKVMKEAKPDIVLVH 102 (375)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred ccHHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 11001112345668889999999999997
No 32
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=68.53 E-value=30 Score=30.50 Aligned_cols=34 Identities=12% Similarity=0.050 Sum_probs=23.1
Q ss_pred CcEEEEecCch-hhhcchHHHHHHHHhCCCcEEEEE
Q 025126 40 KNVLLVIAHPD-DESMFFSPTINYLTSRRHNLHILC 74 (257)
Q Consensus 40 ~~vL~i~aHPD-DE~l~~Ggtl~~~~~~G~~V~vv~ 74 (257)
++||+++ .|- =....+-.....|.++|++|++++
T Consensus 8 ~kIl~~~-~~~~Gh~~p~~~la~~L~~~G~~V~~~~ 42 (430)
T 2iyf_A 8 AHIAMFS-IAAHGHVNPSLEVIRELVARGHRVTYAI 42 (430)
T ss_dssp CEEEEEC-CSCHHHHGGGHHHHHHHHHTTCEEEEEE
T ss_pred ceEEEEe-CCCCccccchHHHHHHHHHCCCeEEEEe
Confidence 4788864 433 233456677777888999988765
No 33
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=68.43 E-value=44 Score=27.50 Aligned_cols=85 Identities=13% Similarity=0.193 Sum_probs=46.8
Q ss_pred CcEEEEecCchhhhcchHHHHHHHHhC--CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCc
Q 025126 40 KNVLLVIAHPDDESMFFSPTINYLTSR--RHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGF 117 (257)
Q Consensus 40 ~~vL~i~aHPDDE~l~~Ggtl~~~~~~--G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~ 117 (257)
+|+.+++..-.+ ++-..|..+.+. +.+|..| +|+-.. . ...+.|+..|+| +..++..++.
T Consensus 4 ~ki~vl~sG~g~---~~~~~l~~l~~~~l~~~I~~V-it~~~~--~------~v~~~A~~~gIp---~~~~~~~~~~--- 65 (212)
T 3av3_A 4 KRLAVFASGSGT---NFQAIVDAAKRGDLPARVALL-VCDRPG--A------KVIERAARENVP---AFVFSPKDYP--- 65 (212)
T ss_dssp EEEEEECCSSCH---HHHHHHHHHHTTCCCEEEEEE-EESSTT--C------HHHHHHHHTTCC---EEECCGGGSS---
T ss_pred cEEEEEEECCcH---HHHHHHHHHHhCCCCCeEEEE-EeCCCC--c------HHHHHHHHcCCC---EEEeCccccc---
Confidence 466666554333 234555565555 4555444 455321 1 234567788994 4444432221
Q ss_pred cccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 025126 118 DKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (257)
Q Consensus 118 ~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (257)
+.++.-+.+.+.+++++||+|++..
T Consensus 66 ----~~~~~~~~~~~~l~~~~~Dliv~a~ 90 (212)
T 3av3_A 66 ----SKAAFESEILRELKGRQIDWIALAG 90 (212)
T ss_dssp ----SHHHHHHHHHHHHHHTTCCEEEESS
T ss_pred ----chhhhHHHHHHHHHhcCCCEEEEch
Confidence 2333345667888899999999874
No 34
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=67.68 E-value=48 Score=26.85 Aligned_cols=93 Identities=9% Similarity=0.013 Sum_probs=56.5
Q ss_pred CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHc-CCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEEe
Q 025126 67 RHNLHILCMSNGNADGMGNIRKDELHRACAVL-KIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLIIT 144 (257)
Q Consensus 67 G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~L-Gv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t 144 (257)
|++ .+.+++..........|.+-..++++.. |+ .+. .... ..|+.+...+.+.+++++. +|+.|++
T Consensus 126 G~~-~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~---~~~--~~~~------~~~~~~~~~~~~~~~l~~~~~~~ai~~ 193 (276)
T 3ksm_A 126 KER-NIALLRLRAGNASTDQREQGFLDVLRKHDKI---RII--AAPY------AGDDRGAARSEMLRLLKETPTIDGLFT 193 (276)
T ss_dssp SCE-EEEECBCCTTCHHHHHHHHHHHHHHTTCTTE---EEE--ECCB------CCSSHHHHHHHHHHHHHHCSCCCEEEC
T ss_pred CCc-eEEEEEcCCCchhHHHHHHHHHHHHHhCCCc---EEE--EEec------CCCcHHHHHHHHHHHHHhCCCceEEEE
Confidence 654 4555543322334677888899999877 66 222 1111 1245667777888888876 6888887
Q ss_pred eCCCCCCCCchHHHHHHHHHHHHHccCCCCccEEEEe
Q 025126 145 FDNYGVSGHCNHRDVHHGICRSYLNGTSERNIEAWEL 181 (257)
Q Consensus 145 ~d~~g~d~H~DH~~~~~av~~A~~~~~~~~~~~~ye~ 181 (257)
.+ |.. +..+.+|+.+.+.+.++.+.-.
T Consensus 194 ~~--------d~~--a~g~~~al~~~g~p~di~vig~ 220 (276)
T 3ksm_A 194 PN--------EST--TIGALVAIRQSGMSKQFGFIGF 220 (276)
T ss_dssp CS--------HHH--HHHHHHHHHHTTCTTSSEEEEE
T ss_pred CC--------chh--hhHHHHHHHHcCCCCCeEEEEe
Confidence 62 333 3445666766665667766644
No 35
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=67.26 E-value=68 Score=28.47 Aligned_cols=92 Identities=12% Similarity=0.201 Sum_probs=51.5
Q ss_pred CcEEE-EecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCcc
Q 025126 40 KNVLL-VIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFD 118 (257)
Q Consensus 40 ~~vL~-i~aHPDDE~l~~Ggtl~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~ 118 (257)
++|++ ++.-|+|.- +.+.+..+.+.+ .+.+.++..|... + ......+.+|+.+ + +.++.-....+..
T Consensus 26 ~ki~~v~Gtr~~~~~--~a~li~~l~~~~-~~~~~~~~tG~h~---~----~~~~~~~~~~i~~-~-~~l~~~~~~~~~~ 93 (396)
T 3dzc_A 26 KKVLIVFGTRPEAIK--MAPLVQQLCQDN-RFVAKVCVTGQHR---E----MLDQVLELFSITP-D-FDLNIMEPGQTLN 93 (396)
T ss_dssp EEEEEEECSHHHHHH--HHHHHHHHHHCT-TEEEEEEECCSSS---H----HHHHHHHHTTCCC-S-EECCCCCTTCCHH
T ss_pred CeEEEEEeccHhHHH--HHHHHHHHHhCC-CCcEEEEEecccH---H----HHHHHHHhcCCCC-c-eeeecCCCCCCHH
Confidence 46655 455666554 488999998863 2444333344321 1 1233346789843 2 2344311111111
Q ss_pred ccCChHHHHHHHHHHHHhcCCCEEEee
Q 025126 119 KLWNHKSLAKIVEEEVVNCSIDLIITF 145 (257)
Q Consensus 119 ~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (257)
. ..-.....+.+++++.+||+|+++
T Consensus 94 ~--~~~~~~~~l~~~l~~~kPDvVi~~ 118 (396)
T 3dzc_A 94 G--VTSKILLGMQQVLSSEQPDVVLVH 118 (396)
T ss_dssp H--HHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred H--HHHHHHHHHHHHHHhcCCCEEEEE
Confidence 1 123556778999999999999998
No 36
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=67.21 E-value=26 Score=31.45 Aligned_cols=92 Identities=12% Similarity=0.206 Sum_probs=50.5
Q ss_pred cEEE-EecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccc
Q 025126 41 NVLL-VIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDK 119 (257)
Q Consensus 41 ~vL~-i~aHPDDE~l~~Ggtl~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~ 119 (257)
+|++ ++.-|+|.- +.+.+..+.+.+..+.+.++-.|.. + .......+.+|+.+ + +.++.-....+...
T Consensus 29 kI~~v~Gtr~~~~~--~a~li~~l~~~~~~~~~~~~~tG~h------~-~m~~~~~~~~~i~~-~-~~l~v~~~~~~~~~ 97 (403)
T 3ot5_A 29 KVMSIFGTRPEAIK--MAPLVLALEKEPETFESTVVITAQH------R-EMLDQVLEIFDIKP-D-IDLDIMKKGQTLAE 97 (403)
T ss_dssp EEEEEECSHHHHHH--HHHHHHHHHTCTTTEEEEEEECC------------CHHHHHHTTCCC-S-EECCCCC-CCCHHH
T ss_pred eEEEEEecChhHHH--HHHHHHHHHhCCCCCcEEEEEecCc------H-HHHHHHHHhcCCCC-C-cccccCCCCCCHHH
Confidence 5554 556666655 4889999987742344433334422 1 12233456789843 2 23433111111110
Q ss_pred cCChHHHHHHHHHHHHhcCCCEEEee
Q 025126 120 LWNHKSLAKIVEEEVVNCSIDLIITF 145 (257)
Q Consensus 120 ~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (257)
..-.+...+.+++++.+||+|+++
T Consensus 98 --~~~~~~~~l~~~l~~~kPD~Vi~~ 121 (403)
T 3ot5_A 98 --ITSRVMNGINEVIAAENPDIVLVH 121 (403)
T ss_dssp --HHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred --HHHHHHHHHHHHHHHcCCCEEEEE
Confidence 123566788999999999999998
No 37
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=66.62 E-value=51 Score=26.79 Aligned_cols=99 Identities=8% Similarity=-0.024 Sum_probs=56.4
Q ss_pred HHHHhCCCcEEEEEEeCCC-C---CCchH-HHHHHHHHHHHHcCCCCCcE-EEccCCCCCCCccccCChHHHHHHHHHHH
Q 025126 61 NYLTSRRHNLHILCMSNGN-A---DGMGN-IRKDELHRACAVLKIPLEQV-KVLDLVDFQDGFDKLWNHKSLAKIVEEEV 134 (257)
Q Consensus 61 ~~~~~~G~~V~vv~lT~G~-~---~~~~~-~R~~E~~~A~~~LGv~~~~~-~~l~~~d~~dg~~~~~~~~~l~~~l~~~i 134 (257)
..+.+.|++ .+.+++... . ..... .|.+-..++++..|++.... .+. ..|+.+...+.+.+++
T Consensus 107 ~~L~~~G~~-~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~----------~~~~~~~~~~~~~~~l 175 (276)
T 2h0a_A 107 AYLARFPGP-IFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPFSPDRLYI----------TRHSQEGGRLALRHFL 175 (276)
T ss_dssp HHHTTSSSC-EEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCCCGGGEEE----------ECSSHHHHHHHHHHHH
T ss_pred HHHHHcCCC-eEEEEecCcccccccchhHHHHHHHHHHHHHHcCCCCChHHeee----------cCCChHHHHHHHHHHH
Confidence 344567876 455555433 2 34567 89999999999999743211 111 1234455556677777
Q ss_pred Hhc-CCCEEEeeCCCCCCCCchHHHHHHHHHHHHHccCC--CCccEEEE
Q 025126 135 VNC-SIDLIITFDNYGVSGHCNHRDVHHGICRSYLNGTS--ERNIEAWE 180 (257)
Q Consensus 135 ~~~-~Pd~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~~--~~~~~~ye 180 (257)
++. +||.|++.+ |. .+..+.+|+.+.+. ++++.+.-
T Consensus 176 ~~~~~~~ai~~~~--------d~--~a~g~~~al~~~g~~vP~di~vvg 214 (276)
T 2h0a_A 176 EKASPPLNVFAGA--------DQ--VALGVLEEAVRLGLTPGRDVRVLG 214 (276)
T ss_dssp TTCCSSEEEECSS--------HH--HHHHHHHHHHTTSCTTTTSEEEEE
T ss_pred hCCCCCCEEEECC--------cH--HHHHHHHHHHHcCCCCCCCeEEEE
Confidence 654 588888762 33 33345566665543 35555543
No 38
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=66.08 E-value=44 Score=28.56 Aligned_cols=94 Identities=14% Similarity=0.191 Sum_probs=56.9
Q ss_pred CcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEEeeC
Q 025126 68 HNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLIITFD 146 (257)
Q Consensus 68 ~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~d 146 (257)
+.-.+++++..........|.+-+.++++..|. ......-. ..|+.+...+.+.+++++. +|+.|++.+
T Consensus 144 ~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~--~~~~~~~~--------~~~~~~~~~~~~~~~L~~~~~~~aI~~~~ 213 (350)
T 3h75_A 144 HGIELLAFSGLKVTPAAQLRERGLRRALAEHPQ--VHLRQLVY--------GEWNRERAYRQAQQLLKRYPKTQLVWSAN 213 (350)
T ss_dssp CCEEEEEEESCTTSHHHHHHHHHHHHHHHHCTT--EEEEEEEE--------CTTCHHHHHHHHHHHHHHCTTEEEEEESS
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHHHCCC--eEEEEEee--------CCCcHHHHHHHHHHHHHhCCCcCEEEECC
Confidence 535666665433333567899999999999886 22222111 1256677777888888775 477788762
Q ss_pred CCCCCCCchHHHHHHHHHHHHHccCC--CCccEEEEe
Q 025126 147 NYGVSGHCNHRDVHHGICRSYLNGTS--ERNIEAWEL 181 (257)
Q Consensus 147 ~~g~d~H~DH~~~~~av~~A~~~~~~--~~~~~~ye~ 181 (257)
| ..+..+.+|+.+.+. ++++.+...
T Consensus 214 --------d--~~a~g~~~al~~~G~~vP~di~vvg~ 240 (350)
T 3h75_A 214 --------D--EMALGAMQAARELGRKPGTDLLFSGV 240 (350)
T ss_dssp --------H--HHHHHHHHHHHHTTCCBTTTBEEEEE
T ss_pred --------h--HHHHHHHHHHHHcCCCCCCCeEEEec
Confidence 2 234456666665553 256666544
No 39
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=65.43 E-value=39 Score=27.48 Aligned_cols=99 Identities=6% Similarity=-0.034 Sum_probs=53.4
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCC
Q 025126 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SID 140 (257)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~Pd 140 (257)
.+.+.|++ .+.+++..........|.+-..++++..|++........ ..|+.+...+.+.+++++. +||
T Consensus 114 ~L~~~G~~-~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~ 183 (275)
T 3d8u_A 114 HLIEQGFK-NVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTH---------EAPSSQLGAEGLAKLLLRDSSLN 183 (275)
T ss_dssp HHHTTTCC-CEEEEECSCSSHHHHHHHHHHHHHHHHTTCCCCCEEECS---------SCCCHHHHHHHHHHHHTTCTTCC
T ss_pred HHHHCCCC-eEEEEcCCCCCchHHHHHHHHHHHHHHcCCCCCccEEEe---------CCCChhHHHHHHHHHHhCCCCCC
Confidence 34556654 233333221122356788888999998887432222211 1134555566677777753 588
Q ss_pred EEEeeCCCCCCCCchHHHHHHHHHHHHHccCC--CCccEEEE
Q 025126 141 LIITFDNYGVSGHCNHRDVHHGICRSYLNGTS--ERNIEAWE 180 (257)
Q Consensus 141 ~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~~--~~~~~~ye 180 (257)
.|++.+ |. .+..+.+|+.+.+. ++++.+.-
T Consensus 184 ai~~~~--------d~--~a~g~~~al~~~g~~vP~di~vvg 215 (275)
T 3d8u_A 184 ALVCSH--------EE--IAIGALFECHRRVLKVPTDIAIIC 215 (275)
T ss_dssp EEEESS--------HH--HHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred EEEEcC--------cH--HHHHHHHHHHHcCCCCCCceEEEe
Confidence 888762 22 33445565655442 35555543
No 40
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=64.63 E-value=59 Score=26.81 Aligned_cols=99 Identities=6% Similarity=0.046 Sum_probs=54.3
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCC
Q 025126 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SID 140 (257)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~Pd 140 (257)
.+.+.|++ .+.+++..........|.+-..++++..|++... ... ....|+.+...+.+.+++++. +||
T Consensus 121 ~L~~~G~~-~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~---~~~------~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (288)
T 3gv0_A 121 RLAQCGRK-RIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFP---IDA------VTIETPLEKIRDFGQRLMQSSDRPD 190 (288)
T ss_dssp HHHHTTCC-EEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECC---CCS------CCTTSCHHHHHHHHHHHTTSSSCCS
T ss_pred HHHHCCCC-eEEEEcCCcccchHHHHHHHHHHHHHHcCCCcch---hhe------eccccchHHHHHHHHHHHhCCCCCc
Confidence 34455654 2333332222223567888888888888873111 000 011245566667778888764 689
Q ss_pred EEEeeCCCCCCCCchHHHHHHHHHHHHHccCC--CCccEEEE
Q 025126 141 LIITFDNYGVSGHCNHRDVHHGICRSYLNGTS--ERNIEAWE 180 (257)
Q Consensus 141 ~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~~--~~~~~~ye 180 (257)
.|++.+ |.. +..+.+|+.+.+. ++++.+.-
T Consensus 191 ai~~~~--------d~~--A~g~~~al~~~g~~vP~di~vig 222 (288)
T 3gv0_A 191 GIVSIS--------GSS--TIALVAGFEAAGVKIGEDVDIVS 222 (288)
T ss_dssp EEEESC--------HHH--HHHHHHHHHTTTCCTTTSCEEEE
T ss_pred EEEEcC--------cHH--HHHHHHHHHHcCCCCCCceEEEE
Confidence 998872 333 3446666765543 35665543
No 41
>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynt heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} SCOP: c.1.10.3 PDB: 2c1h_A*
Probab=64.59 E-value=30 Score=30.76 Aligned_cols=87 Identities=13% Similarity=0.136 Sum_probs=57.3
Q ss_pred HHHHHHHhCC-----CcEEEEEEeCCCCC-----------CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCc-ccc
Q 025126 58 PTINYLTSRR-----HNLHILCMSNGNAD-----------GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGF-DKL 120 (257)
Q Consensus 58 gtl~~~~~~G-----~~V~vv~lT~G~~~-----------~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~-~~~ 120 (257)
+.+..+.++- .=|+=++++.|+.. ..+-.+-.|..+-+..+|+ ..+...+.|+.+|.. .+.
T Consensus 20 ~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~~I~SMPGv~r~sid~l~~~~~~~~~lGi--~~v~LFgvp~~Kd~~gs~A 97 (328)
T 1w1z_A 20 AALRNLVQENTLTVNDLVFPLFVMPGTNAVEEVSSMPGSFRFTIDRAVEECKELYDLGI--QGIDLFGIPEQKTEDGSEA 97 (328)
T ss_dssp HHHHHHHCCCCCCGGGEEEEEEEESSSSCEEEETTEEEEEEEEHHHHHHHHHHHHHHTC--CEEEEEECCSSCCSSCGGG
T ss_pred hHHHHHHhcCcCCHHHceeeEEEecCCCCccccCCCCCeeEeCHHHHHHHHHHHHHCCC--CEEEEECCCCCCCcccccc
Confidence 4455555432 22677888888763 1234445555556667899 567778888766533 235
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEeeC
Q 025126 121 WNHKSLAKIVEEEVVNCSIDLIITFD 146 (257)
Q Consensus 121 ~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (257)
|+++-++.+-.+.|++.-||+++..|
T Consensus 98 ~~~~g~v~rair~iK~~~p~l~vitD 123 (328)
T 1w1z_A 98 YNDNGILQQAIRAIKKAVPELCIMTD 123 (328)
T ss_dssp GCTTSHHHHHHHHHHHHSTTSEEEEE
T ss_pred CCCCChHHHHHHHHHHHCCCeEEEEe
Confidence 77888888888888888899877655
No 42
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=64.12 E-value=19 Score=30.69 Aligned_cols=19 Identities=11% Similarity=0.225 Sum_probs=14.3
Q ss_pred HHHHHHHhcCCCEEEeeCC
Q 025126 129 IVEEEVVNCSIDLIITFDN 147 (257)
Q Consensus 129 ~l~~~i~~~~Pd~V~t~d~ 147 (257)
.+.+++++.+||+|+++.+
T Consensus 75 ~l~~~l~~~~~Dvi~~~~~ 93 (342)
T 2iuy_A 75 EIERWLRTADVDVVHDHSG 93 (342)
T ss_dssp HHHHHHHHCCCSEEEECSS
T ss_pred HHHHHHHhcCCCEEEECCc
Confidence 5667777788888888753
No 43
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=63.18 E-value=65 Score=27.63 Aligned_cols=100 Identities=15% Similarity=0.103 Sum_probs=54.8
Q ss_pred HHHHhCCCcEEEEEEeCCCCCCc-hHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh-cC
Q 025126 61 NYLTSRRHNLHILCMSNGNADGM-GNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN-CS 138 (257)
Q Consensus 61 ~~~~~~G~~V~vv~lT~G~~~~~-~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~-~~ 138 (257)
..|.+.|++= +.+++....... ...|.+-..++++..|++.......... .|+.+...+.+.+++++ -+
T Consensus 180 ~~L~~~G~r~-I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~ 250 (355)
T 3e3m_A 180 NALLARGFRK-IVFLGEKDDDWTRGAARRAGFKRAMREAGLNPDQEIRLGAP--------PLSIEDGVAAAELILQEYPD 250 (355)
T ss_dssp HHHHHTTCCS-EEEEEESSCTTSHHHHHHHHHHHHHHHTTSCSCCEEEESCS--------SCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHCCCCe-EEEEccCcccChhHHHHHHHHHHHHHHCCcCCCccEEEecC--------CCCHHHHHHHHHHHHcCCCC
Confidence 3455667642 223322211222 5678999999999999854322222211 13445556667777776 46
Q ss_pred CCEEEeeCCCCCCCCchHHHHHHHHHHHHHccCC--CCccEEE
Q 025126 139 IDLIITFDNYGVSGHCNHRDVHHGICRSYLNGTS--ERNIEAW 179 (257)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~~--~~~~~~y 179 (257)
||.||+.+ |..+ ..+.+|+.+.+. |.++.+.
T Consensus 251 ~~ai~~~n--------D~~A--~g~~~al~~~G~~vP~disvi 283 (355)
T 3e3m_A 251 TDCIFCVS--------DMPA--FGLLSRLKSIGVAVPEQVSVV 283 (355)
T ss_dssp CCEEEESS--------HHHH--HHHHHHHHHHTCCTTTTCEEE
T ss_pred CcEEEECC--------hHHH--HHHHHHHHHcCCCCCCceEEE
Confidence 89998872 3333 345555554432 3555544
No 44
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=62.80 E-value=25 Score=29.99 Aligned_cols=97 Identities=10% Similarity=0.075 Sum_probs=54.0
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCc-EEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCC
Q 025126 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQ-VKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSID 140 (257)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~-~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd 140 (257)
.+.+.|++ .+.+++..........|.+-..++++..|++... ..+. ..|+.+...+.+.+++++ +||
T Consensus 174 ~L~~~G~~-~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~----------~~~~~~~~~~~~~~ll~~-~~~ 241 (332)
T 2o20_A 174 KLIDSGNK-KIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFE----------GNYSYEQGKALAERLLER-GAT 241 (332)
T ss_dssp HHHHTTCS-SEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC----------SCCSHHHHHHHHHHHHHT-TCC
T ss_pred HHHHCCCC-eEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEe----------CCCCHHHHHHHHHHHhcc-CCC
Confidence 45566764 2333332211223567888888999888874221 1111 113445555667778877 999
Q ss_pred EEEeeCCCCCCCCchHHHHHHHHHHHHHccCC--CCccEEEE
Q 025126 141 LIITFDNYGVSGHCNHRDVHHGICRSYLNGTS--ERNIEAWE 180 (257)
Q Consensus 141 ~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~~--~~~~~~ye 180 (257)
.|++.+ |. .+..+.+|+.+.+. |.++.+.-
T Consensus 242 ai~~~~--------d~--~A~g~~~al~~~G~~vP~disvig 273 (332)
T 2o20_A 242 SAVVSH--------DT--VAVGLLSAMMDKGVKVPEDFEIIS 273 (332)
T ss_dssp EEEESC--------HH--HHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred EEEECC--------hH--HHHHHHHHHHHcCCCCccCEEEEE
Confidence 999872 33 33345666655542 35555443
No 45
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=62.63 E-value=12 Score=30.96 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=28.1
Q ss_pred HHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 025126 93 RACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (257)
Q Consensus 93 ~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (257)
+.|+..|+| +..++..++. +.++.-+.+.+.+++++||+|++..
T Consensus 44 ~~A~~~gIp---~~~~~~~~~~-------~r~~~~~~~~~~l~~~~~Dliv~a~ 87 (209)
T 1meo_A 44 DKAERAGIP---TRVINHKLYK-------NRVEFDSAIDLVLEEFSIDIVCLAG 87 (209)
T ss_dssp HHHHHTTCC---EEECCGGGSS-------SHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHcCCC---EEEECccccC-------chhhhhHHHHHHHHhcCCCEEEEcc
Confidence 566788993 4444433322 2233345577888899999998884
No 46
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=61.27 E-value=68 Score=26.37 Aligned_cols=86 Identities=14% Similarity=0.234 Sum_probs=46.8
Q ss_pred CcEEEEecCchhhhcchHHHHHHHHhCCCcEE-EEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCcc
Q 025126 40 KNVLLVIAHPDDESMFFSPTINYLTSRRHNLH-ILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFD 118 (257)
Q Consensus 40 ~~vL~i~aHPDDE~l~~Ggtl~~~~~~G~~V~-vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~ 118 (257)
+|+++++..-++ ++-..|..+.+.+.++. +.++|+.+.. ...+.|+..|++ +..++..++.
T Consensus 2 ~rI~vl~SG~g~---~~~~~l~~l~~~~~~~~i~~Vvs~~~~~--------~~~~~A~~~gIp---~~~~~~~~~~---- 63 (216)
T 2ywr_A 2 LKIGVLVSGRGS---NLQAIIDAIESGKVNASIELVISDNPKA--------YAIERCKKHNVE---CKVIQRKEFP---- 63 (216)
T ss_dssp EEEEEEECSCCH---HHHHHHHHHHTTSSCEEEEEEEESCTTC--------HHHHHHHHHTCC---EEECCGGGSS----
T ss_pred CEEEEEEeCCcH---HHHHHHHHHHhCCCCCeEEEEEeCCCCh--------HHHHHHHHcCCC---EEEeCccccc----
Confidence 356666444332 23455666666565322 3444554221 124566778993 4444432221
Q ss_pred ccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 025126 119 KLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (257)
Q Consensus 119 ~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (257)
+.++.-+.+.+.+++.+||+|++..
T Consensus 64 ---~r~~~~~~~~~~l~~~~~Dliv~a~ 88 (216)
T 2ywr_A 64 ---SKKEFEERMALELKKKGVELVVLAG 88 (216)
T ss_dssp ---SHHHHHHHHHHHHHHTTCCEEEESS
T ss_pred ---chhhhhHHHHHHHHhcCCCEEEEeC
Confidence 2233345567888899999999874
No 47
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=60.16 E-value=34 Score=30.02 Aligned_cols=18 Identities=0% Similarity=-0.173 Sum_probs=15.1
Q ss_pred HHHHHHHHhcCCCEEEee
Q 025126 128 KIVEEEVVNCSIDLIITF 145 (257)
Q Consensus 128 ~~l~~~i~~~~Pd~V~t~ 145 (257)
....+++++++||+|+++
T Consensus 82 ~~~~~~l~~~~PDvVi~~ 99 (365)
T 3s2u_A 82 FQALRVIRQLRPVCVLGL 99 (365)
T ss_dssp HHHHHHHHHHCCSEEEEC
T ss_pred HHHHHHHHhcCCCEEEEc
Confidence 345678999999999988
No 48
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=59.24 E-value=35 Score=28.39 Aligned_cols=97 Identities=6% Similarity=0.116 Sum_probs=56.2
Q ss_pred HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc---
Q 025126 61 NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC--- 137 (257)
Q Consensus 61 ~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~--- 137 (257)
..|.+.|++ .+.+++..........|.+-..++++..|++. .... ..|+.+...+.+.+++++.
T Consensus 124 ~~L~~~G~~-~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~---~~~~---------~~~~~~~~~~~~~~~l~~~~~~ 190 (295)
T 3hcw_A 124 RHVIEQGVD-ELIFITEKGNFEVSKDRIQGFETVASQFNLDY---QIIE---------TSNEREVILNYMQNLHTRLKDP 190 (295)
T ss_dssp HHHHHHCCS-EEEEEEESSCCHHHHHHHHHHHHHHHHTTCEE---EEEE---------ECSCHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHcCCc-cEEEEcCCccchhHHHHHHHHHHHHHHcCCCe---eEEe---------ccCCHHHHHHHHHHHHhhcccC
Confidence 345567776 33334322222245678899999999999832 2111 1234555666777777765
Q ss_pred -CCCEEEeeCCCCCCCCchHHHHHHHHHHHHHccCC--CCccEEEE
Q 025126 138 -SIDLIITFDNYGVSGHCNHRDVHHGICRSYLNGTS--ERNIEAWE 180 (257)
Q Consensus 138 -~Pd~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~~--~~~~~~ye 180 (257)
+|+.|++.+ | ..+..+.+|+.+.+. +.++.+.-
T Consensus 191 ~~~~ai~~~~--------d--~~A~g~~~al~~~g~~vP~di~vig 226 (295)
T 3hcw_A 191 NIKQAIISLD--------A--MLHLAILSVLYELNIEIPKDVMTAT 226 (295)
T ss_dssp TSCEEEEESS--------H--HHHHHHHHHHHHTTCCTTTTEEEEE
T ss_pred CCCcEEEECC--------h--HHHHHHHHHHHHcCCCCCCceEEEE
Confidence 699998873 2 234455666655542 35665543
No 49
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=58.71 E-value=31 Score=28.74 Aligned_cols=79 Identities=9% Similarity=-0.107 Sum_probs=46.5
Q ss_pred chHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh-cCCCEEEeeCCCCCCCCchHHHHHH
Q 025126 83 MGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN-CSIDLIITFDNYGVSGHCNHRDVHH 161 (257)
Q Consensus 83 ~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~-~~Pd~V~t~d~~g~d~H~DH~~~~~ 161 (257)
....|.+-..++++..|++.....+.. ..|+.+...+.+.+++++ -+||.|++.+ |. .+.
T Consensus 140 ~~~~R~~Gf~~al~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~ai~~~n--------d~--~A~ 200 (294)
T 3qk7_A 140 YVDQRLQGYVQTMSEAGLMPLAGYLQK---------ADPTRPGGYLAASRLLALEVPPTAIITDC--------NM--LGD 200 (294)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCTTCEEE---------ECSSHHHHHHHHHHHHHSSSCCSEEEESS--------HH--HHH
T ss_pred hHHHHHHHHHHHHHHCCCCCChhHeec---------CCCCHHHHHHHHHHHHcCCCCCcEEEECC--------HH--HHH
Confidence 356788888889888887432111110 123455666777888876 4789999873 33 334
Q ss_pred HHHHHHHccCC--CCccEEEE
Q 025126 162 GICRSYLNGTS--ERNIEAWE 180 (257)
Q Consensus 162 av~~A~~~~~~--~~~~~~ye 180 (257)
.+.+|+.+.+. +.++.+.-
T Consensus 201 g~~~al~~~G~~vP~di~vig 221 (294)
T 3qk7_A 201 GVASALDKAGLLGGEGISLIA 221 (294)
T ss_dssp HHHHHHHHTTCSSTTSCEEEE
T ss_pred HHHHHHHHcCCCCCCceEEEe
Confidence 46666665542 35555543
No 50
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=58.49 E-value=41 Score=28.78 Aligned_cols=97 Identities=9% Similarity=0.076 Sum_probs=59.5
Q ss_pred HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCC
Q 025126 61 NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSID 140 (257)
Q Consensus 61 ~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd 140 (257)
..|.+.|++ .+.+++..........|.+...++++..|++ ...... .|+.+...+.+.+++++..||
T Consensus 167 ~~L~~~G~~-~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~----~~~~~~--------~~~~~~~~~~~~~ll~~~~~~ 233 (333)
T 3jvd_A 167 ESVLGGSGM-NIAALVGEESLSTTQERMRGISHAASIYGAE----VTFHFG--------HYSVESGEEMAQVVFNNGLPD 233 (333)
T ss_dssp HHHCCSSSC-EEEEEESCTTSHHHHHHHHHHHHHHHHTTCE----EEEEEC--------CSSHHHHHHHHHHHHHTCCCS
T ss_pred HHHHHCCCC-eEEEEeCCCCCccHHHHHHHHHHHHHHCCCC----EEEecC--------CCCHHHHHHHHHHHhcCCCCc
Confidence 345577876 3455544333334678999999999999983 222111 235566667788888876799
Q ss_pred EEEeeCCCCCCCCchHHHHHHHHHHHHHccCC--CCccEEEE
Q 025126 141 LIITFDNYGVSGHCNHRDVHHGICRSYLNGTS--ERNIEAWE 180 (257)
Q Consensus 141 ~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~~--~~~~~~ye 180 (257)
.|++.+ |. .+..+.+|+.+.+. |.++.+.-
T Consensus 234 ai~~~n--------d~--~A~g~~~al~~~G~~vP~disvig 265 (333)
T 3jvd_A 234 ALIVAS--------PR--LMAGVMRAFTRLNVRVPHDVVIGG 265 (333)
T ss_dssp EEEECC--------HH--HHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred EEEECC--------HH--HHHHHHHHHHHcCCCCCCceEEEE
Confidence 999872 33 33445666665543 35665543
No 51
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=58.43 E-value=28 Score=27.93 Aligned_cols=79 Identities=13% Similarity=0.096 Sum_probs=45.4
Q ss_pred EEEEEeCCCC---CCchHHHHHHHHHHHHHcCCCCCcEEEcc-CCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 025126 71 HILCMSNGNA---DGMGNIRKDELHRACAVLKIPLEQVKVLD-LVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (257)
Q Consensus 71 ~vv~lT~G~~---~~~~~~R~~E~~~A~~~LGv~~~~~~~l~-~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (257)
.+-++|.|+. +.....-..-+.+.++.+|+ ++.... .+| +.+.+.+.|.+.+.+ .|+|+|.
T Consensus 5 ~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~---~v~~~~iv~D---------d~~~I~~~l~~a~~~--~DlVitt- 69 (172)
T 3kbq_A 5 NASVITVGNEILKGRTVNTNAAFIGNFLTYHGY---QVRRGFVVMD---------DLDEIGWAFRVALEV--SDLVVSS- 69 (172)
T ss_dssp EEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTC---EEEEEEEECS---------CHHHHHHHHHHHHHH--CSEEEEE-
T ss_pred EEEEEEEcccccCCcEEeHHHHHHHHHHHHCCC---EEEEEEEeCC---------CHHHHHHHHHHHHhc--CCEEEEc-
Confidence 3445555642 23333344446667788898 333332 233 346777888888775 7999998
Q ss_pred CCCCC-CCchHHHHHHHHHHHH
Q 025126 147 NYGVS-GHCNHRDVHHGICRSY 167 (257)
Q Consensus 147 ~~g~d-~H~DH~~~~~av~~A~ 167 (257)
.|.+ ++-|+ +.+++.+++
T Consensus 70 -GG~g~~~~D~--T~ea~a~~~ 88 (172)
T 3kbq_A 70 -GGLGPTFDDM--TVEGFAKCI 88 (172)
T ss_dssp -SCCSSSTTCC--HHHHHHHHH
T ss_pred -CCCcCCcccc--hHHHHHHHc
Confidence 4432 45554 445555544
No 52
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=57.47 E-value=20 Score=28.81 Aligned_cols=74 Identities=11% Similarity=0.129 Sum_probs=42.8
Q ss_pred cEEEEEEeCCC-------C-CCchHHHHHHHHHHHHHcCCCCCcEEEcc-CCCCCCCccccCChHHHHHHHHHHHHhcCC
Q 025126 69 NLHILCMSNGN-------A-DGMGNIRKDELHRACAVLKIPLEQVKVLD-LVDFQDGFDKLWNHKSLAKIVEEEVVNCSI 139 (257)
Q Consensus 69 ~V~vv~lT~G~-------~-~~~~~~R~~E~~~A~~~LGv~~~~~~~l~-~~d~~dg~~~~~~~~~l~~~l~~~i~~~~P 139 (257)
+..+-++|.|+ . +...+.-..-+.+.++.+|+ ++.... .|| +.+.+.+.|.+.+.+...
T Consensus 15 ~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~---~v~~~~iv~D---------d~~~I~~al~~a~~~~~~ 82 (178)
T 2pjk_A 15 SLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGH---KIIGYSLVPD---------DKIKILKAFTDALSIDEV 82 (178)
T ss_dssp CCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTC---EEEEEEEECS---------CHHHHHHHHHHHHTCTTC
T ss_pred CCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCC---EEEEEEEeCC---------CHHHHHHHHHHHHhcCCC
Confidence 45566666665 2 33333333445566777898 333332 233 346777888888776558
Q ss_pred CEEEeeCCCCCC-CCchH
Q 025126 140 DLIITFDNYGVS-GHCNH 156 (257)
Q Consensus 140 d~V~t~d~~g~d-~H~DH 156 (257)
|+|+|. .|.+ +.-|+
T Consensus 83 DlVitt--GG~s~g~~D~ 98 (178)
T 2pjk_A 83 DVIIST--GGTGYSPTDI 98 (178)
T ss_dssp CEEEEE--SCCSSSTTCC
T ss_pred CEEEEC--CCCCCCCCcc
Confidence 999998 4432 34454
No 53
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=56.44 E-value=14 Score=29.70 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=30.2
Q ss_pred CcEEEEecCch-hhhcchHHHHHHHHhCCCcEEEEEEeC
Q 025126 40 KNVLLVIAHPD-DESMFFSPTINYLTSRRHNLHILCMSN 77 (257)
Q Consensus 40 ~~vL~i~aHPD-DE~l~~Ggtl~~~~~~G~~V~vv~lT~ 77 (257)
+++|+|.+||+ ..+ .+...+....+...+|.++-+-.
T Consensus 1 MkiLii~ghP~~~~S-~~~~~l~~~~~~~~~v~v~dL~~ 38 (177)
T 3ha2_A 1 MQTLIIVAHPELARS-NTQPFFKAAIENFSNVTWHPLVA 38 (177)
T ss_dssp CCEEEEECCTTTTTC-SSHHHHHHHHTTCTTEEEEECCT
T ss_pred CeEEEEEcCCCcccC-HHHHHHHHHHhcCCCEEEEECCC
Confidence 47999999999 554 67778888887778898888877
No 54
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=55.74 E-value=70 Score=26.27 Aligned_cols=45 Identities=11% Similarity=0.123 Sum_probs=27.8
Q ss_pred HHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 025126 92 HRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (257)
Q Consensus 92 ~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (257)
.+.|+..|++ +...+..++. +.++.-+.+.+.+++++||+|++..
T Consensus 43 ~~~A~~~gIp---~~~~~~~~~~-------~r~~~~~~~~~~l~~~~~Dliv~ag 87 (212)
T 1jkx_A 43 LERARQAGIA---THTLIASAFD-------SREAYDRELIHEIDMYAPDVVVLAG 87 (212)
T ss_dssp HHHHHHTTCE---EEECCGGGCS-------SHHHHHHHHHHHHGGGCCSEEEESS
T ss_pred HHHHHHcCCc---EEEeCccccc-------chhhccHHHHHHHHhcCCCEEEEeC
Confidence 4556778983 4444322221 2233345577888999999999874
No 55
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=55.66 E-value=37 Score=27.98 Aligned_cols=100 Identities=7% Similarity=-0.007 Sum_probs=55.5
Q ss_pred HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCc-EEEccCCCCCCCccccC----ChHHHHHHHHHHHH
Q 025126 61 NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQ-VKVLDLVDFQDGFDKLW----NHKSLAKIVEEEVV 135 (257)
Q Consensus 61 ~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~-~~~l~~~d~~dg~~~~~----~~~~l~~~l~~~i~ 135 (257)
..+.+.|++ .+.+++..........|.+...++++..|++... ..+... ..| +.+...+.+.++++
T Consensus 115 ~~L~~~G~~-~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~l~ 185 (288)
T 2qu7_A 115 KRVLESTCK-EVGLLLANPNISTTIGRKNGYNKAISEFDLNVNPSLIHYSD--------QQLGTNAQIYSGYEATKTLLS 185 (288)
T ss_dssp HHHHTSSCC-CEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEECC--------SSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCC-cEEEEecCCCCCCHHHHHHHHHHHHHHcCCCCCcceEEecc--------CCccccCCHHHHHHHHHHHHh
Confidence 345567865 2344443222234567888899999999974221 111000 113 33445566777887
Q ss_pred hcCCCEEEeeCCCCCCCCchHHHHHHHHHHHHHccCC--CCccEEEE
Q 025126 136 NCSIDLIITFDNYGVSGHCNHRDVHHGICRSYLNGTS--ERNIEAWE 180 (257)
Q Consensus 136 ~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~~--~~~~~~ye 180 (257)
+ +||.|++.+ |..+ ..+.+|+.+.+. ++++.+.-
T Consensus 186 ~-~~~ai~~~~--------d~~a--~g~~~al~~~g~~vP~di~vvg 221 (288)
T 2qu7_A 186 K-GIKGIVATN--------HLLL--LGALQAIKESEKEIKKDVIIVG 221 (288)
T ss_dssp T-TCCEEEECS--------HHHH--HHHHHHHHHSSCCBTTTBEEEE
T ss_pred c-CCCEEEECC--------cHHH--HHHHHHHHHhCCCCCCceEEEE
Confidence 7 999999872 3333 345566655543 35665544
No 56
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Probab=55.64 E-value=41 Score=29.42 Aligned_cols=86 Identities=14% Similarity=0.137 Sum_probs=49.3
Q ss_pred EEEEecCchhhhcchHHH---HHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCcc
Q 025126 42 VLLVIAHPDDESMFFSPT---INYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFD 118 (257)
Q Consensus 42 vL~i~aHPDDE~l~~Ggt---l~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~ 118 (257)
+|+++=|.|.. +-.-.+ |....+-| +|+++++-.+ . ...+.+.+..+|+ ++++..+.+.+.
T Consensus 2 ilv~~e~~~g~-l~~~~~~eal~aA~~Lg-~V~av~~G~~----~----~~~~~~~a~a~Ga--Dkv~~v~d~~l~---- 65 (307)
T 1efp_A 2 VLLLGEVTNGA-LNRDATAKAVAAVKALG-DVTVLCAGAS----A----KAAAEEAAKIAGV--AKVLVAEDALYG---- 65 (307)
T ss_dssp EEEECCBSSSC-BCHHHHHHHHHHHGGGS-CEEEEEEETT----C----HHHHHHHHTSTTE--EEEEEEECGGGT----
T ss_pred EEEEEeccCCE-eCchhhHHHHHHHHHhC-CEEEEEECCc----h----HHHHHHHHHhcCC--CEEEEecCchhc----
Confidence 67777774432 220111 11222225 7877776532 1 1122445566799 788888865432
Q ss_pred ccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 025126 119 KLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (257)
Q Consensus 119 ~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (257)
..+.+...+.|.++ +.+||+|++..
T Consensus 66 -~~~~~~~a~~La~~--~~~pd~VL~g~ 90 (307)
T 1efp_A 66 -HRLAEPTAALIVGL--AGDYSHIAAPA 90 (307)
T ss_dssp -TCCHHHHHHHHHHH--HTTCSEEEEES
T ss_pred -cCCHHHHHHHHHHH--ccCCCEEEEeC
Confidence 13556677777777 55899999983
No 57
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=55.56 E-value=90 Score=26.00 Aligned_cols=78 Identities=8% Similarity=-0.074 Sum_probs=46.7
Q ss_pred chHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEEeeCCCCCCCCchHHHHHH
Q 025126 83 MGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLIITFDNYGVSGHCNHRDVHH 161 (257)
Q Consensus 83 ~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~d~~g~d~H~DH~~~~~ 161 (257)
....|.+-..++++..|++ +...-. ..|+.+...+.+.+++++. +|+.|++.+ |. .+.
T Consensus 137 ~~~~R~~gf~~~l~~~g~~---~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~ai~~~~--------d~--~a~ 195 (313)
T 2h3h_A 137 NSLQRIQGFKDAIKDSEIE---IVDILN--------DEEDGARAVSLAEAALNAHPDLDAFFGVY--------AY--NGP 195 (313)
T ss_dssp HHHHHHHHHHHHHTTSSCE---EEEEEE--------CSSCHHHHHHHHHHHHHHCTTCCEEEECS--------TT--HHH
T ss_pred cHHHHHHHHHHHhcCCCCE---EEEeec--------CCCCHHHHHHHHHHHHHHCcCceEEEEcC--------CC--ccH
Confidence 3567888888888887772 211100 1245566667778888765 578998873 22 233
Q ss_pred HHHHHHHccCCCCccEEEEe
Q 025126 162 GICRSYLNGTSERNIEAWEL 181 (257)
Q Consensus 162 av~~A~~~~~~~~~~~~ye~ 181 (257)
.+.+|+.+.+.+.++.+.-.
T Consensus 196 g~~~al~~~G~p~dv~vvg~ 215 (313)
T 2h3h_A 196 AQALVVKNAGKVGKVKIVCF 215 (313)
T ss_dssp HHHHHHHHTTCTTTSEEEEE
T ss_pred HHHHHHHHcCCCCCeEEEEe
Confidence 45666666665566665543
No 58
>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A*
Probab=55.53 E-value=68 Score=24.58 Aligned_cols=82 Identities=12% Similarity=0.193 Sum_probs=44.6
Q ss_pred EEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCC
Q 025126 43 LLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWN 122 (257)
Q Consensus 43 L~i~aHPDDE~l~~Ggtl~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~ 122 (257)
|.+++.|..+ ....++++|.+|.+...+..+.... .+..+.++.+|. ++..+.. |..+ .+
T Consensus 22 l~~s~~p~~a------~a~~La~~Ga~vvi~~r~~~e~~~~-----~~~~~~~~~~G~---~~~~i~~-Dv~~-----~~ 81 (157)
T 3gxh_A 22 LLSSGLPNEQ------QFSLLKQAGVDVVINLMPDSSKDAH-----PDEGKLVTQAGM---DYVYIPV-DWQN-----PK 81 (157)
T ss_dssp EEEEBCCCHH------HHHHHHHTTCCEEEECSCTTSTTSC-----TTHHHHHHHTTC---EEEECCC-CTTS-----CC
T ss_pred eeEcCCCCHH------HHHHHHHcCCCEEEECCCccccccc-----ccHHHHHHHcCC---eEEEecC-CCCC-----CC
Confidence 7888888754 4677889999985533222222111 123345566787 4444443 3221 12
Q ss_pred hHHHHHHHHHHHHhcCCCEEEe
Q 025126 123 HKSLAKIVEEEVVNCSIDLIIT 144 (257)
Q Consensus 123 ~~~l~~~l~~~i~~~~Pd~V~t 144 (257)
.+++.+.+..+.+++..|+++-
T Consensus 82 ~~~v~~~~~~i~~~~G~dVLVn 103 (157)
T 3gxh_A 82 VEDVEAFFAAMDQHKGKDVLVH 103 (157)
T ss_dssp HHHHHHHHHHHHHTTTSCEEEE
T ss_pred HHHHHHHHHHHHhcCCCCEEEE
Confidence 3566555555556666666543
No 59
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=55.44 E-value=87 Score=25.81 Aligned_cols=99 Identities=6% Similarity=0.033 Sum_probs=57.2
Q ss_pred HHHhC--CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-C
Q 025126 62 YLTSR--RHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-S 138 (257)
Q Consensus 62 ~~~~~--G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~ 138 (257)
.+.+. |++ .+.+++ |........|.+-..++++..|.+. ....... ..|+.+...+.+.+++++. +
T Consensus 119 ~l~~~~~g~~-~i~~i~-~~~~~~~~~R~~gf~~~l~~~~~~~---~~~~~~~------~~~~~~~~~~~~~~~l~~~~~ 187 (305)
T 3g1w_A 119 KMAELLDGEG-EVAVIT-LPNQLNHQERTTGFKETLEAEFPAI---EVIAVED------GRGDSLHSRRVAHQLLEDYPN 187 (305)
T ss_dssp HHHHHTTTCE-EEEEEE-CTTCHHHHHHHHHHHHHHHHHCTTE---EEEEEEE------CTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhCCCc-EEEEEe-CCCcccHHHHHHHHHHHHHhhCCCC---EEEEEec------CCCCHHHHHHHHHHHHHhCCC
Confidence 44455 664 344454 3333345678888999999888732 2211100 1245566677788888775 5
Q ss_pred CCEEEeeCCCCCCCCchHHHHHHHHHHHHHccCCCCccEEEEe
Q 025126 139 IDLIITFDNYGVSGHCNHRDVHHGICRSYLNGTSERNIEAWEL 181 (257)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~~~~~~~~ye~ 181 (257)
|+.|++.+ |.. +..+.+|+.+.+...++.+.-.
T Consensus 188 ~~ai~~~~--------d~~--a~g~~~al~~~g~~~di~vig~ 220 (305)
T 3g1w_A 188 LAGIFATE--------ANG--GVGVGDAVRLESRAGEIQIISF 220 (305)
T ss_dssp EEEEEESS--------HHH--HHHHHHHHHHTTCTTTSEEEEE
T ss_pred ceEEEECC--------Ccc--hhhHHHHHHhcCCCCCeEEEEe
Confidence 78888772 232 3456666665554456655543
No 60
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=53.96 E-value=58 Score=28.51 Aligned_cols=85 Identities=13% Similarity=0.308 Sum_probs=50.1
Q ss_pred CCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCC-Cc-hHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCC
Q 025126 39 KKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNAD-GM-GNIRKDELHRACAVLKIPLEQVKVLDLVDFQDG 116 (257)
Q Consensus 39 ~~~vL~i~aHPDDE~l~~Ggtl~~~~~~G~~V~vv~lT~G~~~-~~-~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg 116 (257)
.+||++++.. | |.-++|..|.++|++|. .++|..+.. +- .+.......+.|..+|++ + +...+.+
T Consensus 2 ~mrivf~Gtp--~---fa~~~L~~L~~~~~~v~-~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIp---v--~~~~~~~-- 68 (314)
T 3tqq_A 2 SLKIVFAGTP--Q---FAVPTLRALIDSSHRVL-AVYTQPDRPSGRGQKIMESPVKEIARQNEIP---I--IQPFSLR-- 68 (314)
T ss_dssp CCEEEEEECS--G---GGHHHHHHHHHSSSEEE-EEECCCC----------CCHHHHHHHHTTCC---E--ECCSCSS--
T ss_pred CcEEEEECCC--H---HHHHHHHHHHHCCCeEE-EEEeCCCCccccCCccCCCHHHHHHHHcCCC---E--ECcccCC--
Confidence 4678888875 2 23478999999998875 455654432 11 122334456778889994 2 2222211
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 025126 117 FDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (257)
Q Consensus 117 ~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (257)
.+ .+.+.+++++||++++..
T Consensus 69 ------~~----~~~~~l~~~~~Dliv~~~ 88 (314)
T 3tqq_A 69 ------DE----VEQEKLIAMNADVMVVVA 88 (314)
T ss_dssp ------SH----HHHHHHHTTCCSEEEEES
T ss_pred ------CH----HHHHHHHhcCCCEEEEcC
Confidence 12 345677888999998874
No 61
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=53.82 E-value=65 Score=26.59 Aligned_cols=86 Identities=9% Similarity=0.152 Sum_probs=50.3
Q ss_pred CCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc---CCCEE
Q 025126 66 RRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC---SIDLI 142 (257)
Q Consensus 66 ~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~---~Pd~V 142 (257)
.|+ ..+++++..........|.+...++++..|++.+..... . ..|+.+...+.+.+++++. +|+.|
T Consensus 138 ~g~-~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~-~--------~~~~~~~~~~~~~~~l~~~~~~~~~ai 207 (309)
T 2fvy_A 138 DGQ-IQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLD-T--------AMWDTAQAKDKMDAWLSGPNANKIEVV 207 (309)
T ss_dssp SSS-EEEEEEECSTTCHHHHHHHHHHHHHHHHTTCCEEEEEEE-E--------CTTCHHHHHHHHHHHHTSTTGGGCCEE
T ss_pred CCc-eEEEEEEcCCCCccHHHHHHHHHHHHHhcCCceEEEEEe-c--------CCCCHHHHHHHHHHHHHhCCCCCccEE
Confidence 454 445555433222345778899999999999732111111 1 1245556667778888864 68999
Q ss_pred EeeCCCCCCCCchHHHHHHHHHHHHHccC
Q 025126 143 ITFDNYGVSGHCNHRDVHHGICRSYLNGT 171 (257)
Q Consensus 143 ~t~d~~g~d~H~DH~~~~~av~~A~~~~~ 171 (257)
++.+ |.. +..+.+|+.+.+
T Consensus 208 ~~~~--------d~~--a~g~~~al~~~g 226 (309)
T 2fvy_A 208 IANN--------DAM--AMGAVEALKAHN 226 (309)
T ss_dssp EESS--------HHH--HHHHHHHHHHTT
T ss_pred EECC--------chh--HHHHHHHHHHcC
Confidence 8862 333 334666666555
No 62
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A
Probab=52.91 E-value=36 Score=30.15 Aligned_cols=87 Identities=13% Similarity=0.172 Sum_probs=55.0
Q ss_pred HHHHHHHhCC-----CcEEEEEEeCCCCC--------C---chHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCc-ccc
Q 025126 58 PTINYLTSRR-----HNLHILCMSNGNAD--------G---MGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGF-DKL 120 (257)
Q Consensus 58 gtl~~~~~~G-----~~V~vv~lT~G~~~--------~---~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~-~~~ 120 (257)
+.+.++.++- .=++-++++.|+.. | .+-.+-.|..+-+..+|+ ..+...+.|+.+|.. .+.
T Consensus 14 ~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~~I~SMPGv~r~sid~l~~~~~~~~~lGi--~~v~LFgvp~~Kd~~gs~A 91 (323)
T 1l6s_A 14 PALRAMFEETTLSLNDLVLPIFVEEEIDDYKAVEAMPGVMRIPEKHLAREIERIANAGI--RSVMTFGISHHTDETGSDA 91 (323)
T ss_dssp HHHHHHHCCCCCCGGGEEEEEEEETTCSSCEECTTSTTCEEEEGGGHHHHHHHHHHHTC--CEEEEEEECSSCBSSCGGG
T ss_pred hHHHHHhhcCcCCHHHceeeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHCCC--CEEEEeCCCCCCCcccccc
Confidence 3455555432 22677888888653 1 222334444555666899 567777777766532 235
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEeeC
Q 025126 121 WNHKSLAKIVEEEVVNCSIDLIITFD 146 (257)
Q Consensus 121 ~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (257)
|+++-++.+-.+.|++.-||+++..|
T Consensus 92 ~~~~g~v~rair~iK~~~pdl~vitD 117 (323)
T 1l6s_A 92 WREDGLVARMSRICKQTVPEMIVMSD 117 (323)
T ss_dssp GSTTSHHHHHHHHHHHHCTTSEEEEE
T ss_pred CCCCCcHHHHHHHHHHHCCCeEEEEe
Confidence 77888888878888888899877655
No 63
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=51.96 E-value=35 Score=28.12 Aligned_cols=77 Identities=8% Similarity=0.050 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEEeeCCCCCCCCchHHHHHHH
Q 025126 84 GNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLIITFDNYGVSGHCNHRDVHHG 162 (257)
Q Consensus 84 ~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~d~~g~d~H~DH~~~~~a 162 (257)
...|.+-..++++..|++.....+.. ..|+.+...+.+.+++++. +||.|++.+ | ..+..
T Consensus 142 ~~~R~~gf~~~l~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~ai~~~~--------d--~~a~g 202 (289)
T 3g85_A 142 MDNRNKGFIETCHKNGIKISENHIIA---------AENSIHGGVDAAKKLMKLKNTPKALFCNS--------D--SIALG 202 (289)
T ss_dssp HHHHHHHHHHHHHHTTCBCCGGGEEE---------CCSSHHHHHHHHHHHTTSSSCCSEEEESS--------H--HHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCChhheec---------cCCCHHHHHHHHHHHHcCCCCCcEEEEcC--------C--HHHHH
Confidence 46688888888888887422111111 1234556667777888764 688898872 2 23344
Q ss_pred HHHHHHccCC--CCccEEE
Q 025126 163 ICRSYLNGTS--ERNIEAW 179 (257)
Q Consensus 163 v~~A~~~~~~--~~~~~~y 179 (257)
+.+|+.+.+. ++++.+.
T Consensus 203 ~~~al~~~g~~vP~di~vi 221 (289)
T 3g85_A 203 VISVLNKRQISIPDDIEIV 221 (289)
T ss_dssp HHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHcCCCCCCceEEE
Confidence 5566655542 3565554
No 64
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=51.46 E-value=56 Score=26.98 Aligned_cols=100 Identities=8% Similarity=0.022 Sum_probs=53.6
Q ss_pred HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CC
Q 025126 61 NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SI 139 (257)
Q Consensus 61 ~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~P 139 (257)
..+.+.|++ .+.+++..........|.+...++++..|++........ ..|+.+...+.+.+++++. +|
T Consensus 121 ~~L~~~G~~-~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~ 190 (290)
T 2rgy_A 121 ATLIEHGHR-KLAVISGPFTASDNVERLDGFFDELARHGIARDSVPLIE---------SDFSPEGGYAATCQLLESKAPF 190 (290)
T ss_dssp HHHHHTTCC-SEEEEESCTTCHHHHHHHHHHHHHHHTTTCCGGGSCEEE---------CCSSHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHCCCc-eEEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCcccEEe---------cCCChhHHHHHHHHHHhCCCCC
Confidence 344566754 233333222222356788888999988887422111110 1234455556677777764 68
Q ss_pred CEEEeeCCCCCCCCchHHHHHHHHHHHHHccCC--CCccEEEE
Q 025126 140 DLIITFDNYGVSGHCNHRDVHHGICRSYLNGTS--ERNIEAWE 180 (257)
Q Consensus 140 d~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~~--~~~~~~ye 180 (257)
|.|++.+ |. .+..+.+|+.+.+. |.++.+.-
T Consensus 191 ~ai~~~~--------d~--~A~g~~~al~~~G~~vP~di~vvg 223 (290)
T 2rgy_A 191 TGLFCAN--------DT--MAVSALARFQQLGISVPGDVSVIG 223 (290)
T ss_dssp SEEEESS--------HH--HHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred cEEEECC--------cH--HHHHHHHHHHHcCCCCCCceEEEE
Confidence 9999862 22 23445666655542 35555543
No 65
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=51.41 E-value=90 Score=25.46 Aligned_cols=98 Identities=11% Similarity=0.117 Sum_probs=54.0
Q ss_pred HHHh--CCCcEEEEEEeCCCCC-CchHHHHHHHHHHHHHc-CCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc
Q 025126 62 YLTS--RRHNLHILCMSNGNAD-GMGNIRKDELHRACAVL-KIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC 137 (257)
Q Consensus 62 ~~~~--~G~~V~vv~lT~G~~~-~~~~~R~~E~~~A~~~L-Gv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~ 137 (257)
.+.+ .|++ .+.+++ |..+ .....|.+-..++++.. |+ .+.+..... ...|+.+...+.+.+++++.
T Consensus 117 ~l~~~~~g~~-~i~~i~-~~~~~~~~~~R~~gf~~~l~~~~~~-----~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~ 186 (291)
T 3l49_A 117 QMVADLGGKG-NVLVFN-GFYSVPVCKIRYDQMKYVLEAFPDV-----KIIEPELRD---VIPNTIQSAYSNVTDMLTKY 186 (291)
T ss_dssp HHHHHHTTCE-EEEEEC-SCTTSHHHHHHHHHHHHHHHTCTTE-----EECSSCBCC---CSSSHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCc-eEEEEe-CCCCCchHHHHHHHHHHHHHHCCCC-----EEEeeeccC---CCCCCHHHHHHHHHHHHHhC
Confidence 3445 5653 344443 3322 23566888888888887 44 222211000 01234566677888888876
Q ss_pred ----CCCEEEeeCCCCCCCCchHHHHHHHHHHHHHccCCCCccEEEE
Q 025126 138 ----SIDLIITFDNYGVSGHCNHRDVHHGICRSYLNGTSERNIEAWE 180 (257)
Q Consensus 138 ----~Pd~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~~~~~~~~ye 180 (257)
+||.|++.+ |. .+..+.+|+.+.+.. ++.+..
T Consensus 187 ~~~~~~~ai~~~~--------d~--~a~g~~~al~~~g~~-di~vvg 222 (291)
T 3l49_A 187 PNEGDVGAIWACW--------DV--PMIGATQALQAAGRT-DIRTYG 222 (291)
T ss_dssp CSTTSCCEEEESS--------HH--HHHHHHHHHHHTTCC-SCEEEE
T ss_pred CCcCCcCEEEECC--------Cc--hHHHHHHHHHHcCCC-CeEEEE
Confidence 589998872 22 344556666666544 665554
No 66
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=50.98 E-value=87 Score=25.58 Aligned_cols=89 Identities=6% Similarity=0.032 Sum_probs=53.0
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHHHc-CCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEEeeCC
Q 025126 70 LHILCMSNGNADGMGNIRKDELHRACAVL-KIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLIITFDN 147 (257)
Q Consensus 70 V~vv~lT~G~~~~~~~~R~~E~~~A~~~L-Gv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~d~ 147 (257)
-.+.+++..........|.+-..++++.. |++ +...-. ..|+.+...+.+.+++++. +||.|++.+
T Consensus 136 ~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~---~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~ai~~~~- 203 (293)
T 3l6u_A 136 GRIVEITGTANVYTTNERHRGFLKGIENEPTLS---IVDSVS--------GNYDPVTSERVMRQVIDSGIPFDAVYCHN- 203 (293)
T ss_dssp EEEEEEECSTTCHHHHHHHHHHHHHHTTCTTEE---EEEEEE--------CTTCHHHHHHHHHHHHHTTCCCSEEEESS-
T ss_pred ceEEEEECCCCCchHHHHHHHHHHHHHhCCCcE---Eeeecc--------CCCCHHHHHHHHHHHHHhCCCCCEEEECC-
Confidence 45566653333334677999999999888 762 211111 1245667777788888764 688898872
Q ss_pred CCCCCCchHHHHHHHHHHHHHccCCCCccEEEE
Q 025126 148 YGVSGHCNHRDVHHGICRSYLNGTSERNIEAWE 180 (257)
Q Consensus 148 ~g~d~H~DH~~~~~av~~A~~~~~~~~~~~~ye 180 (257)
|. .+..+.+|+.+.+.. ++.+.-
T Consensus 204 -------d~--~a~g~~~al~~~g~~-di~vig 226 (293)
T 3l6u_A 204 -------DD--IAMGVLEALKKAKIS-GKIVVG 226 (293)
T ss_dssp -------HH--HHHHHHHHHHHTTCC-CCEEEE
T ss_pred -------ch--HHHHHHHHHHhCCCC-CeEEEE
Confidence 22 334456666655543 555543
No 67
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=49.86 E-value=90 Score=25.69 Aligned_cols=96 Identities=13% Similarity=0.090 Sum_probs=55.0
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCC
Q 025126 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SID 140 (257)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~Pd 140 (257)
.+.+.|++ .+.+++... ......|.+-..++++..|++... .... . .|+.+...+.+.+++++. +||
T Consensus 120 ~L~~~G~~-~I~~i~~~~-~~~~~~R~~Gf~~al~~~g~~~~~-~~~~-~--------~~~~~~~~~~~~~~l~~~~~~~ 187 (289)
T 3k9c_A 120 HLTELGHR-NIAHIDGAD-APGGADRRAGFLAAMDRHGLSASA-TVVT-G--------GTTETEGAEGMHTLLEMPTPPT 187 (289)
T ss_dssp HHHHTTCC-SEEEECCTT-STTHHHHHHHHHHHHHHTTCGGGE-EEEC-C--------CSSHHHHHHHHHHHHTSSSCCS
T ss_pred HHHHCCCC-cEEEEeCCC-CccHHHHHHHHHHHHHHCCCCCCc-cEEE-C--------CCCHHHHHHHHHHHHcCCCCCC
Confidence 45566764 233333222 225677889999999999984322 2221 1 134556666777787753 689
Q ss_pred EEEeeCCCCCCCCchHHHHHHHHHHHHHccCC--CCccEEE
Q 025126 141 LIITFDNYGVSGHCNHRDVHHGICRSYLNGTS--ERNIEAW 179 (257)
Q Consensus 141 ~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~~--~~~~~~y 179 (257)
.|++.+ |. .+..+.+|+.+.+. |.++.+.
T Consensus 188 ai~~~~--------d~--~A~g~~~al~~~g~~vP~di~vi 218 (289)
T 3k9c_A 188 AVVAFN--------DR--CATGVLDLLVRSGRDVPADISVV 218 (289)
T ss_dssp EEEESS--------HH--HHHHHHHHHHHTTCCTTTTCEEE
T ss_pred EEEECC--------hH--HHHHHHHHHHHcCCCCCCceEEE
Confidence 998873 22 33455666655542 3555544
No 68
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=49.28 E-value=55 Score=28.79 Aligned_cols=35 Identities=11% Similarity=0.124 Sum_probs=22.2
Q ss_pred CCcEEEEecCch-hhhcchHHHHHHHHhCCCcEEEEE
Q 025126 39 KKNVLLVIAHPD-DESMFFSPTINYLTSRRHNLHILC 74 (257)
Q Consensus 39 ~~~vL~i~aHPD-DE~l~~Ggtl~~~~~~G~~V~vv~ 74 (257)
.++||++ +.|- =-..-+-+....|.++|++|++++
T Consensus 12 ~~~Il~~-~~~~~GHv~p~l~la~~L~~~Gh~V~~~~ 47 (424)
T 2iya_A 12 PRHISFF-NIPGHGHVNPSLGIVQELVARGHRVSYAI 47 (424)
T ss_dssp CCEEEEE-CCSCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cceEEEE-eCCCCcccchHHHHHHHHHHCCCeEEEEe
Confidence 3578876 4442 223445556667788999987764
No 69
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=49.09 E-value=56 Score=27.71 Aligned_cols=101 Identities=14% Similarity=0.143 Sum_probs=56.2
Q ss_pred HHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh-cC
Q 025126 60 INYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN-CS 138 (257)
Q Consensus 60 l~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~-~~ 138 (257)
...+.+.|++ .+.+++..........|.+-..++++..|++.....+.. ..|+.+...+.+.+++++ -+
T Consensus 173 ~~~L~~~G~~-~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~ll~~~~~ 242 (338)
T 3dbi_A 173 VAELINAGHQ-EIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIAN---------GKWTPASGAEGVEMLLERGAK 242 (338)
T ss_dssp HHHHHHTTCC-SEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEEC---------CCSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHCCCC-EEEEEeCCCCCccHHHHHHHHHHHHHHCCCCCCcceEEe---------CCCCHHHHHHHHHHHHcCCCC
Confidence 3445567764 233333222223456788889999999997432111110 124555666677777764 46
Q ss_pred CCEEEeeCCCCCCCCchHHHHHHHHHHHHHccCC--CCccEEEE
Q 025126 139 IDLIITFDNYGVSGHCNHRDVHHGICRSYLNGTS--ERNIEAWE 180 (257)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~~--~~~~~~ye 180 (257)
||.||+.+ |. .+..+.+|+.+.+. |+++.+.-
T Consensus 243 ~~ai~~~n--------d~--~A~g~~~al~~~G~~vP~di~vvg 276 (338)
T 3dbi_A 243 FSALVASN--------DD--MAIGAMKALHERGVAVPEQVSVIG 276 (338)
T ss_dssp CSEEEESS--------HH--HHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred CeEEEECC--------hH--HHHHHHHHHHHcCCCCCCCeEEEE
Confidence 89999872 33 33445666665543 35665543
No 70
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=48.46 E-value=50 Score=27.07 Aligned_cols=99 Identities=11% Similarity=0.045 Sum_probs=51.6
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh-cCCC
Q 025126 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN-CSID 140 (257)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~-~~Pd 140 (257)
.+.+.|++ .+.+++..........|.+...++++..|++...... .. ..|+.+...+.+.+++.+ -+||
T Consensus 120 ~L~~~G~~-~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~~~~~~--~~-------~~~~~~~~~~~~~~~l~~~~~~~ 189 (289)
T 1dbq_A 120 YLIERGHR-EIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWI--VQ-------GDFEPESGYRAMQQILSQPHRPT 189 (289)
T ss_dssp HHHHTTCC-SEEEECCC------CHHHHHHHHHHHHTTCCCCGGGB--CC-------CCSSHHHHHHHHHHHHTSSSCCS
T ss_pred HHHHCCCC-eEEEEecCCccccHHHHHHHHHHHHHHCCCCCChHHe--Ee-------CCCCHHHHHHHHHHHHhCCCCCC
Confidence 44566764 2333332211223467888888998888873211100 00 124555556667777765 4689
Q ss_pred EEEeeCCCCCCCCchHHHHHHHHHHHHHccCC--CCccEEEE
Q 025126 141 LIITFDNYGVSGHCNHRDVHHGICRSYLNGTS--ERNIEAWE 180 (257)
Q Consensus 141 ~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~~--~~~~~~ye 180 (257)
.|++.+ |.. +..+.+|+.+.+. +.++.+.-
T Consensus 190 ai~~~~--------d~~--a~g~~~al~~~G~~vP~di~vvg 221 (289)
T 1dbq_A 190 AVFCGG--------DIM--AMGALCAADEMGLRVPQDVSLIG 221 (289)
T ss_dssp EEEESC--------HHH--HHHHHHHHHHTTCCTTTTCEEEE
T ss_pred EEEECC--------cHH--HHHHHHHHHHcCCCCCCceEEEe
Confidence 998762 333 3345566655543 35555543
No 71
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=47.62 E-value=85 Score=25.50 Aligned_cols=97 Identities=8% Similarity=-0.034 Sum_probs=56.5
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCC
Q 025126 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SID 140 (257)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~Pd 140 (257)
.+.+.|++ .+.+++. .... ...|.+...++++..|++.. ... .. ..|+.+...+.+.+++++. +||
T Consensus 112 ~L~~~G~~-~i~~i~~-~~~~-~~~R~~gf~~~l~~~~~~~~--~~~-~~-------~~~~~~~~~~~~~~~l~~~~~~~ 178 (280)
T 3gyb_A 112 HLIDLGHT-HIAHLRV-GSGA-GLRRFESFEATMRAHGLEPL--SND-YL-------GPAVEHAGYTETLALLKEHPEVT 178 (280)
T ss_dssp HHHHTTCC-SEEEECC-SSHH-HHHHHHHHHHHHHHTTCCCE--ECC-CC-------SCCCHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHCCCC-eEEEEeC-CCch-HHHHHHHHHHHHHHcCcCCC--ccc-cc-------CCCCHHHHHHHHHHHHhCCCCCC
Confidence 45567765 2333332 2222 77899999999999998421 111 11 1245566677788888774 688
Q ss_pred EEEeeCCCCCCCCchHHHHHHHHHHHHHccCC--CCccEEEEe
Q 025126 141 LIITFDNYGVSGHCNHRDVHHGICRSYLNGTS--ERNIEAWEL 181 (257)
Q Consensus 141 ~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~~--~~~~~~ye~ 181 (257)
.|++.+ |. .+..+.+|+.+.+. ++++.+.-.
T Consensus 179 ai~~~~--------d~--~a~g~~~al~~~g~~vP~di~vvg~ 211 (280)
T 3gyb_A 179 AIFSSN--------DI--TAIGALGAARELGLRVPEDLSIIGY 211 (280)
T ss_dssp EEEESS--------HH--HHHHHHHHHHHHTCCTTTTCEEEEE
T ss_pred EEEECC--------hH--HHHHHHHHHHHcCCCCCCeeEEEEE
Confidence 898872 32 33445555654442 356655543
No 72
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=47.59 E-value=52 Score=27.14 Aligned_cols=77 Identities=12% Similarity=0.040 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHcCCCCCc-EEEccCCCCCCCccccCChHHHHHHHHHHHH-hc--CCCEEEeeCCCCCCCCchHHHH
Q 025126 84 GNIRKDELHRACAVLKIPLEQ-VKVLDLVDFQDGFDKLWNHKSLAKIVEEEVV-NC--SIDLIITFDNYGVSGHCNHRDV 159 (257)
Q Consensus 84 ~~~R~~E~~~A~~~LGv~~~~-~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~-~~--~Pd~V~t~d~~g~d~H~DH~~~ 159 (257)
...|.+...++++..|++... ..+. ..|+.+...+.+.++++ +. +||.|++.+ |..
T Consensus 140 ~~~R~~Gf~~~l~~~g~~~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~--------d~~-- 199 (287)
T 3bbl_A 140 GNDRLQGYLEAMQTAQLPIETGYILR----------GEGTFEVGRAMTLHLLDLSPERRPTAIMTLN--------DTM-- 199 (287)
T ss_dssp HHHHHHHHHHHHHHTTCCCCGGGEEE----------CCSSHHHHHHHHHHHHTSCTTTSCSEEEESS--------HHH--
T ss_pred HHHHHHHHHHHHHHcCCCCChhhEEe----------CCCCHHHHHHHHHHHHhhCCCCCCcEEEECC--------cHH--
Confidence 456788888888888874211 1111 12345555667778887 54 689998872 332
Q ss_pred HHHHHHHHHccCC--CCccEEEE
Q 025126 160 HHGICRSYLNGTS--ERNIEAWE 180 (257)
Q Consensus 160 ~~av~~A~~~~~~--~~~~~~ye 180 (257)
+..+.+|+.+.+. ++++.+.-
T Consensus 200 a~g~~~al~~~G~~vP~di~vig 222 (287)
T 3bbl_A 200 AIGAMAAARERGLTIGTDLAIIG 222 (287)
T ss_dssp HHHHHHHHHHTTCCBTTTBEEEE
T ss_pred HHHHHHHHHHcCCCCCCCEEEEE
Confidence 3445566655542 35555543
No 73
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=47.52 E-value=98 Score=26.81 Aligned_cols=88 Identities=16% Similarity=0.134 Sum_probs=56.5
Q ss_pred HHHHHhCCCcEEEEEEeCCCCC-CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcC
Q 025126 60 INYLTSRRHNLHILCMSNGNAD-GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCS 138 (257)
Q Consensus 60 l~~~~~~G~~V~vv~lT~G~~~-~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~ 138 (257)
+.++.++|.+..+..+--|+.. .....|.+ .++|+.+|+ +.....+|.. -+.+++.+.|.++=..-+
T Consensus 23 v~~l~~~g~~P~Lavilvg~dpas~~Yv~~k--~k~~~~~Gi---~~~~~~lp~~-------~s~~ell~~i~~lN~D~~ 90 (281)
T 2c2x_A 23 VAALDAAGRTPGLGTILVGDDPGSQAYVRGK--HADCAKVGI---TSIRRDLPAD-------ISTATLNETIDELNANPD 90 (281)
T ss_dssp HHHHHHTTCCCEEEEEEESCCHHHHHHHHHH--HHHHHHHTC---EEEEEEECTT-------CCHHHHHHHHHHHHHCTT
T ss_pred HHHHHhcCCCceEEEEEeCCChhhHHHHHHH--HHHHHHcCC---EEEEEECCCC-------CCHHHHHHHHHHhcCCCC
Confidence 4556667765666666666542 33344544 489999999 4555566541 145788888888877777
Q ss_pred CCEEEeeCCCCCCCCchHHHHHH
Q 025126 139 IDLIITFDNYGVSGHCNHRDVHH 161 (257)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~~~~ 161 (257)
.+=|+..-| .-.|.|-..+-+
T Consensus 91 v~GIlvqlP--lP~~id~~~i~~ 111 (281)
T 2c2x_A 91 CTGYIVQLP--LPKHLDENAALE 111 (281)
T ss_dssp CCEEEECSC--CCTTSCHHHHHH
T ss_pred CCEEEEeCC--CCCCCCHHHHHh
Confidence 777888844 446777666433
No 74
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=47.49 E-value=94 Score=25.53 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=28.6
Q ss_pred HHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 025126 93 RACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (257)
Q Consensus 93 ~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (257)
+.|+..|+| ++..+..++. +.++.-+.+.+.+++++||+|++..
T Consensus 51 ~~A~~~gIp---~~~~~~~~~~-------~r~~~d~~~~~~l~~~~~Dliv~ag 94 (209)
T 4ds3_A 51 AKAEAAGIA---TQVFKRKDFA-------SKEAHEDAILAALDVLKPDIICLAG 94 (209)
T ss_dssp HHHHHTTCC---EEECCGGGSS-------SHHHHHHHHHHHHHHHCCSEEEESS
T ss_pred HHHHHcCCC---EEEeCccccC-------CHHHHHHHHHHHHHhcCCCEEEEec
Confidence 457778993 4555433321 2333445678888999999999874
No 75
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=47.34 E-value=87 Score=23.46 Aligned_cols=77 Identities=14% Similarity=0.217 Sum_probs=53.8
Q ss_pred CCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCcc
Q 025126 39 KKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFD 118 (257)
Q Consensus 39 ~~~vL~i~aHPDDE~l~~Ggtl~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~ 118 (257)
+-.+++|..--|-|- .--.|....+.|.+|.+++-... .-|++|...-.+.-|+ ++.-
T Consensus 77 qldvvvivttddkew--ikdfieeakergvevfvvynnkd------ddrrkeaqqefrsdgv---dvrt----------- 134 (162)
T 2l82_A 77 QLDVVVIVTTDDKEW--IKDFIEEAKERGVEVFVVYNNKD------DDRRKEAQQEFRSDGV---DVRT----------- 134 (162)
T ss_dssp TCCEEEEEECCCHHH--HHHHHHHHHHTTCEEEEEEECSC------HHHHHHHHHHHCCSSC---EEEE-----------
T ss_pred CCcEEEEEecCcHHH--HHHHHHHHHhcCcEEEEEecCCC------chhHHHHHHHhhhcCc---eeee-----------
Confidence 445777776655554 46678888899999998885433 6788898877766676 2221
Q ss_pred ccCChHHHHHHHHHHHHhcC
Q 025126 119 KLWNHKSLAKIVEEEVVNCS 138 (257)
Q Consensus 119 ~~~~~~~l~~~l~~~i~~~~ 138 (257)
..+.+++++.+.+++++..
T Consensus 135 -vsdkeelieqvrrfvrkvg 153 (162)
T 2l82_A 135 -VSDKEELIEQVRRFVRKVG 153 (162)
T ss_dssp -ESSHHHHHHHHHHHHHHHT
T ss_pred -cCCHHHHHHHHHHHHHHhc
Confidence 2256788899999988754
No 76
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=47.30 E-value=30 Score=28.85 Aligned_cols=92 Identities=12% Similarity=0.044 Sum_probs=51.5
Q ss_pred HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccC-C-CCCCCccccCChHHHH--HHHHHHHHh
Q 025126 61 NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDL-V-DFQDGFDKLWNHKSLA--KIVEEEVVN 136 (257)
Q Consensus 61 ~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~-~-d~~dg~~~~~~~~~l~--~~l~~~i~~ 136 (257)
..+.+.|++ .+.+++..........|.+-..++++..|++......... + +. +.+... +.+.+++++
T Consensus 124 ~~L~~~G~~-~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~ 194 (301)
T 3miz_A 124 RYLLERGHR-RIGYIRLNPILLGAELRLDAFRRTTSEFGLTENDLSISLGMDGPV--------GAENNYVFAAATEMLKQ 194 (301)
T ss_dssp HHHHTTTCC-SEEEEECCTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECEESST--------TSCEECHHHHHHHHHTS
T ss_pred HHHHHcCCC-eEEEEecCccchhHHHHHHHHHHHHHHcCCCCCcceEEEcCCCCc--------CccccHHHHHHHHHHcC
Confidence 345677876 4445543332234567999999999999985433222221 0 11 111111 455666665
Q ss_pred c-CCCEEEeeCCCCCCCCchHHHHHHHHHHHHHccC
Q 025126 137 C-SIDLIITFDNYGVSGHCNHRDVHHGICRSYLNGT 171 (257)
Q Consensus 137 ~-~Pd~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~ 171 (257)
. +||.|++.+ |. .+..+.+|+.+.+
T Consensus 195 ~~~~~ai~~~~--------d~--~A~g~~~al~~~g 220 (301)
T 3miz_A 195 DDRPTAIMSGN--------DE--MAIQIYIAAMALG 220 (301)
T ss_dssp TTCCSEEEESS--------HH--HHHHHHHHHHTTT
T ss_pred CCCCcEEEECC--------HH--HHHHHHHHHHHcC
Confidence 3 789999872 22 3455666676554
No 77
>1pdo_A Mannose permease; phosphoenolpyruvate dependent phosphotransferase system, phosphotransferase; 1.70A {Escherichia coli} SCOP: c.54.1.1 PDB: 1vrc_A 1vsq_A* 2jzo_A 2jzn_A
Probab=47.06 E-value=66 Score=24.19 Aligned_cols=65 Identities=18% Similarity=0.289 Sum_probs=45.6
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHHHc-CCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCC--CEEEeeCC
Q 025126 71 HILCMSNGNADGMGNIRKDELHRACAVL-KIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSI--DLIITFDN 147 (257)
Q Consensus 71 ~vv~lT~G~~~~~~~~R~~E~~~A~~~L-Gv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~P--d~V~t~d~ 147 (257)
.++.+|.|. =.+++.++++.+ |- .+++..++++... +.+++.+++.+.+++... .+++..|-
T Consensus 3 ~iii~sHG~-------~A~gl~~~~~~i~G~-~~~v~ai~~~~~~-------~~~~~~~~i~~~i~~~~~~~gvliLtDl 67 (135)
T 1pdo_A 3 AIVIGTHGW-------AAEQLLKTAEMLLGE-QENVGWIDFVPGE-------NAETLIEKYNAQLAKLDTTKGVLFLVDT 67 (135)
T ss_dssp EEEEECSBT-------HHHHHHHHHHHHHCC-CSSEEEECBCTTC-------CHHHHHHHHHHHHTTSCCTTCEEEEESS
T ss_pred eEEEEeChH-------HHHHHHHHHHHHcCC-cCCEEEEEeeCCC-------CHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 467777773 236777777765 74 3688888876421 456788899999998764 48888887
Q ss_pred CCC
Q 025126 148 YGV 150 (257)
Q Consensus 148 ~g~ 150 (257)
.|+
T Consensus 68 ~GG 70 (135)
T 1pdo_A 68 WGG 70 (135)
T ss_dssp TTS
T ss_pred CCC
Confidence 673
No 78
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=46.53 E-value=67 Score=28.09 Aligned_cols=85 Identities=15% Similarity=0.251 Sum_probs=49.7
Q ss_pred CCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCC-Cch-HHHHHHHHHHHHHcCCCCCcEEEccCCCCCCC
Q 025126 39 KKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNAD-GMG-NIRKDELHRACAVLKIPLEQVKVLDLVDFQDG 116 (257)
Q Consensus 39 ~~~vL~i~aHPDDE~l~~Ggtl~~~~~~G~~V~vv~lT~G~~~-~~~-~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg 116 (257)
++|+++++-. + +.++.|..+.++|++|. .++|+-+.. +-+ +.......+.|...|++ + +...+.
T Consensus 3 ~mrIvf~Gt~-~----fa~~~L~~L~~~~~~i~-~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIp---v--~~~~~~--- 68 (314)
T 1fmt_A 3 SLRIIFAGTP-D----FAARHLDALLSSGHNVV-GVFTQPDRPAGRGKKLMPSPVKVLAEEKGLP---V--FQPVSL--- 68 (314)
T ss_dssp CCEEEEEECS-H----HHHHHHHHHHHTTCEEE-EEECCCCBC------CBCCHHHHHHHHTTCC---E--ECCSCS---
T ss_pred CCEEEEEecC-H----HHHHHHHHHHHCCCcEE-EEEeCCCCccccccccCcCHHHHHHHHcCCc---E--EecCCC---
Confidence 3688888864 2 56788899999998765 445664321 111 11112456677889994 2 221111
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 025126 117 FDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (257)
Q Consensus 117 ~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (257)
..+ .+.+.+++.+||++++..
T Consensus 69 -----~~~----~~~~~l~~~~~Dliv~~~ 89 (314)
T 1fmt_A 69 -----RPQ----ENQQLVAELQADVMVVVA 89 (314)
T ss_dssp -----CSH----HHHHHHHHTTCSEEEEES
T ss_pred -----CCH----HHHHHHHhcCCCEEEEee
Confidence 112 345667788999988874
No 79
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=45.49 E-value=74 Score=26.13 Aligned_cols=99 Identities=14% Similarity=0.044 Sum_probs=52.6
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCE
Q 025126 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDL 141 (257)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~ 141 (257)
.+.+.|++ .+.+++..........|.+...++++..|++........ ..|+.+...+.+.++++.-+||.
T Consensus 119 ~L~~~G~~-~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~a 188 (290)
T 3clk_A 119 LLINEGHR-QIGIAGIDQYPYTGRKRLAGYKKALKEANIAINQEWIKP---------GDYSYTSGEQAMKAFGKNTDLTG 188 (290)
T ss_dssp HHHTTTCC-SEEEESCCCCTTTHHHHHHHHHHHHHHTTCCCCGGGEEC---------CCSSHHHHHHHHHHHCTTCCCSE
T ss_pred HHHHcCCC-EEEEEeCCCCCcchHHHHHHHHHHHHHcCCCCCcceEEc---------CCCChhhHHHHHHHHhccCCCcE
Confidence 34566764 233343222223457888889999999887422110110 11344445555666665346888
Q ss_pred EEeeCCCCCCCCchHHHHHHHHHHHHHccCC--CCccEEEE
Q 025126 142 IITFDNYGVSGHCNHRDVHHGICRSYLNGTS--ERNIEAWE 180 (257)
Q Consensus 142 V~t~d~~g~d~H~DH~~~~~av~~A~~~~~~--~~~~~~ye 180 (257)
|++.+ |.. +..+.+|+.+.+. +.++.+.-
T Consensus 189 i~~~~--------d~~--a~g~~~al~~~g~~vP~di~vvg 219 (290)
T 3clk_A 189 IIAAS--------DMT--AIGILNQASSFGIEVPKDLSIVS 219 (290)
T ss_dssp EEESS--------HHH--HHHHHHHHHHTTCCTTTTCEEEE
T ss_pred EEECC--------cHH--HHHHHHHHHHcCCCCCCceEEEE
Confidence 88872 333 3345566655542 35555543
No 80
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A*
Probab=45.23 E-value=80 Score=28.09 Aligned_cols=88 Identities=11% Similarity=0.022 Sum_probs=56.3
Q ss_pred HHHHHHHHhCC-----CcEEEEEEeCCCCC--------C---chHHHHHHHHHHHHHcCCCCCcEEEccC-CCC-CCCc-
Q 025126 57 SPTINYLTSRR-----HNLHILCMSNGNAD--------G---MGNIRKDELHRACAVLKIPLEQVKVLDL-VDF-QDGF- 117 (257)
Q Consensus 57 Ggtl~~~~~~G-----~~V~vv~lT~G~~~--------~---~~~~R~~E~~~A~~~LGv~~~~~~~l~~-~d~-~dg~- 117 (257)
.+.+..+.++- .=|+=++++.|+.. | .+-.+-.|..+-+..+|+ ..+...+. |+. +|..
T Consensus 21 ~~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~~I~SMPGv~r~sid~l~~~~~~~~~lGi--~~v~LFgv~~~~~KD~~g 98 (337)
T 1w5q_A 21 DDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVERLSIDQLLIEAEEWVALGI--PALALFPVTPVEKKSLDA 98 (337)
T ss_dssp SHHHHHHHCCCCCCGGGEEEEEEEESSSSCEEECTTSTTCEEEEHHHHHHHHHHHHHTTC--CEEEEEECCCGGGCBSSC
T ss_pred ChHHHHHHhcCCCCHHHceeeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHCCC--CEEEEecCCCcccCCccc
Confidence 34566666542 22677888888753 1 234445555556677999 56777777 433 3322
Q ss_pred cccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 025126 118 DKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (257)
Q Consensus 118 ~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (257)
.+.|+.+-++.+-.+.|++.-||+++..|
T Consensus 99 s~A~~~~g~v~rair~iK~~~pdl~vitD 127 (337)
T 1w5q_A 99 AEAYNPEGIAQRATRALRERFPELGIITD 127 (337)
T ss_dssp GGGGCTTSHHHHHHHHHHHHCTTSEEEEE
T ss_pred CccCCCCChHHHHHHHHHHHCCCeEEEEe
Confidence 23578888888888888888899877655
No 81
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=45.22 E-value=56 Score=27.24 Aligned_cols=99 Identities=13% Similarity=0.095 Sum_probs=52.8
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHH-----HHh
Q 025126 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEE-----VVN 136 (257)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~-----i~~ 136 (257)
.|.+.|++ .+.+++..........|.+-..++++..|++.....+.. ..|+.+...+.+.++ +++
T Consensus 125 ~L~~~G~~-~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~l~~ 194 (303)
T 3kke_A 125 HLITLGHS-RIAFISGTAIHDTAQRRKEGYLETLASAGLRSEAAWVVD---------AGWEADAGSAALNTLYRGANLGK 194 (303)
T ss_dssp HHHHTTCC-SEEEEESCSSCHHHHHHHHHHHHHHHHTTCCCCGGGEEE---------CCSSHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHCCCC-eEEEEeCCCcCccHHHHHHHHHHHHHHcCCCCCcceEEe---------cCCChHHHHHHHHHhcchhhhcC
Confidence 45566654 233333222223456788888999999887432111111 113445555666666 654
Q ss_pred -cCCCEEEeeCCCCCCCCchHHHHHHHHHHHHHccCC--CCccEEEE
Q 025126 137 -CSIDLIITFDNYGVSGHCNHRDVHHGICRSYLNGTS--ERNIEAWE 180 (257)
Q Consensus 137 -~~Pd~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~~--~~~~~~ye 180 (257)
-+||.|++.+ |. .+..+.+|+.+.+. +.++.+.-
T Consensus 195 ~~~~~ai~~~n--------d~--~A~g~~~al~~~G~~vP~di~vig 231 (303)
T 3kke_A 195 PDGPTAVVVAS--------VN--AAVGALSTALRLGLRVPEDLSIVG 231 (303)
T ss_dssp TTSCSEEEESS--------HH--HHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred CCCCcEEEECC--------HH--HHHHHHHHHHHcCCCCCCceEEEE
Confidence 3688998872 33 33445566655542 35555543
No 82
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=45.19 E-value=1.1e+02 Score=25.80 Aligned_cols=99 Identities=13% Similarity=0.031 Sum_probs=54.8
Q ss_pred HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CC
Q 025126 61 NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SI 139 (257)
Q Consensus 61 ~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~P 139 (257)
..|.+.|++- +.+++ |........|.+...++++..|++.....+.... .|+.+...+.+.+++++. +|
T Consensus 171 ~~L~~~G~~~-I~~i~-~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~ 240 (339)
T 3h5o_A 171 RHLLSRGKRR-IGFLG-AQLDERVMKRLDGYRAALDAADCRDAGLEWLDPQ--------PSSMQMGADMLDRALAERPDC 240 (339)
T ss_dssp HHHHHTTCCS-EEEEE-ESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEECS--------CCCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHCCCCe-EEEEe-CCCCccHHHHHHHHHHHHHHCCCCCCChheEecC--------CCCHHHHHHHHHHHHcCCCCC
Confidence 3456677652 22222 2222235678888999999999832222222211 134455566777777764 68
Q ss_pred CEEEeeCCCCCCCCchHHHHHHHHHHHHHccCC--CCccEEE
Q 025126 140 DLIITFDNYGVSGHCNHRDVHHGICRSYLNGTS--ERNIEAW 179 (257)
Q Consensus 140 d~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~~--~~~~~~y 179 (257)
|.|++.+ |. .+..+.+|+.+.+. |.++.+.
T Consensus 241 ~ai~~~n--------D~--~A~g~~~al~~~G~~vP~disvv 272 (339)
T 3h5o_A 241 DALFCCN--------DD--LAIGALARSQQLGIAVPERLAIA 272 (339)
T ss_dssp CEEEESS--------HH--HHHHHHHHHHHTTCCTTTTCEEE
T ss_pred cEEEECC--------hH--HHHHHHHHHHHcCCCCCCCEEEE
Confidence 9998872 32 34445566655542 3555544
No 83
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=45.16 E-value=1.3e+02 Score=24.68 Aligned_cols=112 Identities=7% Similarity=0.020 Sum_probs=60.6
Q ss_pred chhhhcchHHHHH-HHHh-CCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHH
Q 025126 49 PDDESMFFSPTIN-YLTS-RRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSL 126 (257)
Q Consensus 49 PDDE~l~~Ggtl~-~~~~-~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l 126 (257)
+|+... |-.+. .+.+ .|++-.+++++..........|.+-..++++..|. .+.+.... ....|+.+..
T Consensus 107 ~d~~~~--g~~a~~~l~~~~g~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~~---~~~~~~~~-----~~~~~~~~~~ 176 (303)
T 3d02_A 107 IDNEKF--AAEYVEHMAKRMGGKGGYVIYVGSLTVPQHNLWADLLVKYQKEHYP---DMHEVTRR-----MPVAESVDDS 176 (303)
T ss_dssp SCHHHH--HHHHHHHHHHHTTTCEEEEEECSCSSCHHHHHHHHHHHHHHHHHCT---TEEESSSC-----BSCTTCHHHH
T ss_pred cCHHHH--HHHHHHHHHHHhCcCceEEEEecCCCCccHHHHHHHHHHHHHhhCC---CCEEEEee-----cCCCCCHHHH
Confidence 455542 33333 3445 68865555554332222346788888888886553 23333211 0113456666
Q ss_pred HHHHHHHHHhc-CCCEEEeeCCCCCCCCchHHHHHHHHHHHHHccCCCCccEEEE
Q 025126 127 AKIVEEEVVNC-SIDLIITFDNYGVSGHCNHRDVHHGICRSYLNGTSERNIEAWE 180 (257)
Q Consensus 127 ~~~l~~~i~~~-~Pd~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~~~~~~~~ye 180 (257)
.+.+.+++++. +|+.|++.+ |. .+..+.+|+.+.+...++.+.-
T Consensus 177 ~~~~~~~l~~~~~~~ai~~~~--------d~--~a~g~~~al~~~g~~~dv~vig 221 (303)
T 3d02_A 177 RRTTLDLMKTYPDLKAVVSFG--------SN--GPIGAGRAVKEKRAKNKVAVYG 221 (303)
T ss_dssp HHHHHHHHHHCTTEEEEEESS--------TT--HHHHHHHHHHHTTCTTTCEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEeC--------Cc--chhHHHHHHHhcCCCCCeEEEE
Confidence 67778888765 578888773 11 2344556665554334555543
No 84
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=44.92 E-value=75 Score=27.02 Aligned_cols=77 Identities=8% Similarity=0.009 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEEeeCCCCCCCCchHHHHHHH
Q 025126 84 GNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLIITFDNYGVSGHCNHRDVHHG 162 (257)
Q Consensus 84 ~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~d~~g~d~H~DH~~~~~a 162 (257)
...|.+-..++++..|++.....+.. ..|+.+...+.+.+++++. +||.||+.+ |. .+..
T Consensus 201 ~~~R~~Gf~~al~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~ll~~~~~~~ai~~~n--------d~--~A~g 261 (344)
T 3kjx_A 201 ARKRFEGFTEVLGKNGVEIEDREFYS---------GGSALAKGREMTQAMLERSPDLDFLYYSN--------DM--IAAG 261 (344)
T ss_dssp HHHHHHHHHHHHHHTTCCCSCEEECS---------SCCCHHHHHHHHHHHHHHSTTCCEEEESS--------HH--HHHH
T ss_pred HHHHHHHHHHHHHHcCCCCChheEEe---------CCCCHHHHHHHHHHHHhcCCCCCEEEECC--------HH--HHHH
Confidence 45688888899998887543332221 1234555666777888765 789998872 32 3344
Q ss_pred HHHHHHccCC--CCccEEE
Q 025126 163 ICRSYLNGTS--ERNIEAW 179 (257)
Q Consensus 163 v~~A~~~~~~--~~~~~~y 179 (257)
+.+|+.+.+. |.++.+.
T Consensus 262 ~~~al~~~g~~vP~disvv 280 (344)
T 3kjx_A 262 GLLYLLEQGIDIPGQIGLA 280 (344)
T ss_dssp HHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHcCCCCCCceEEE
Confidence 5555655542 3555443
No 85
>3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} SCOP: c.54.1.0
Probab=43.80 E-value=73 Score=24.48 Aligned_cols=67 Identities=22% Similarity=0.262 Sum_probs=45.3
Q ss_pred cEEEEEEeCCCCCCchHHHHHHHHHHHHH-cCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-C--CCEEEe
Q 025126 69 NLHILCMSNGNADGMGNIRKDELHRACAV-LKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-S--IDLIIT 144 (257)
Q Consensus 69 ~V~vv~lT~G~~~~~~~~R~~E~~~A~~~-LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~--Pd~V~t 144 (257)
.+.++.+|-|. -.+++.++++. +|- .+++..++++... +.+++.+++.+.+++. . -.+++.
T Consensus 3 ~igiii~sHG~-------~A~gl~~~~~~i~G~-~~~v~av~~~~~~-------~~~~~~~~i~~~i~~~~~~~~gvliL 67 (144)
T 3lfh_A 3 EKFVLIITHGD-------FGKGLLSGAEVIIGK-QENVHTVGLNLGD-------NIEVVRKEVEKIIKEKLQEDKEIIIV 67 (144)
T ss_dssp CEEEEEEEETT-------HHHHHHHHHHHHHCC-CSSEEEEEECTTC-------CHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred cceEEEEeCcH-------HHHHHHHHHHHHcCC-CCcEEEEEccCCC-------CHHHHHHHHHHHHHHhhCCCCcEEEE
Confidence 46788888883 24566666665 564 3688888875421 4567788888888887 4 337777
Q ss_pred eCCCCC
Q 025126 145 FDNYGV 150 (257)
Q Consensus 145 ~d~~g~ 150 (257)
.|-.|+
T Consensus 68 tDl~GG 73 (144)
T 3lfh_A 68 VDLFGG 73 (144)
T ss_dssp ESSSSS
T ss_pred EeCCCC
Confidence 777663
No 86
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=43.73 E-value=1.7e+02 Score=25.70 Aligned_cols=77 Identities=14% Similarity=0.000 Sum_probs=45.6
Q ss_pred HHHHHhCCCcEEEEEEeCCCCCC--chHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh-
Q 025126 60 INYLTSRRHNLHILCMSNGNADG--MGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN- 136 (257)
Q Consensus 60 l~~~~~~G~~V~vv~lT~G~~~~--~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~- 136 (257)
...+.+.|++= +.+++...... ....|.+-..++++..|++. ..+..... ..++.+...+.+.+++++
T Consensus 131 ~~~L~~~G~r~-I~~i~~~~~~~~~~~~~R~~Gf~~al~~~g~~~--~~~~~~~~------~~~~~~~~~~~~~~~l~~~ 201 (412)
T 4fe7_A 131 FLHLKEKGVNR-FAFYGLPESSGKRWATEREYAFRQLVAEEKYRG--VVYQGLET------APENWQHAQNRLADWLQTL 201 (412)
T ss_dssp HHHHHHTTCCE-EEEECCCTTSCCHHHHHHHHHHHHHHTTSSSCC--EEECCSCS------SCSSHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCce-EEEecccccccccHHHHHHHHHHHHHHHcCCCc--cccccccc------cccchhhHHHHHHHHHHhC
Confidence 34567788763 34443322222 26789999999999999842 22222111 112344556667777766
Q ss_pred cCCCEEEee
Q 025126 137 CSIDLIITF 145 (257)
Q Consensus 137 ~~Pd~V~t~ 145 (257)
-+||.|++.
T Consensus 202 ~~~~aI~~~ 210 (412)
T 4fe7_A 202 PPQTGIIAV 210 (412)
T ss_dssp CTTEEEEES
T ss_pred CCCeEEEEE
Confidence 468888877
No 87
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=43.01 E-value=1.1e+02 Score=25.08 Aligned_cols=95 Identities=9% Similarity=0.015 Sum_probs=50.5
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHH--HHHhc-C
Q 025126 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEE--EVVNC-S 138 (257)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~--~i~~~-~ 138 (257)
.+.+.|++- +.+++..........|.+...++++..|++.. +.. + .|+.+...+.+.+ ++++. +
T Consensus 118 ~L~~~G~~~-I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~-~~~-~----------~~~~~~~~~~~~~~~~l~~~~~ 184 (285)
T 3c3k_A 118 QLVKSGKKR-IALINHDLAYQYAQHRESGYLNRLKFHGLDYS-RIS-Y----------AENLDYMAGKLATFSLLKSAVK 184 (285)
T ss_dssp HHHHTTCCC-EEEEECCTTSHHHHHHHHHHHHHHHHHTCCCC-EEE-E----------CSSSSHHHHHHHHHHHHSSSSC
T ss_pred HHHHcCCCe-EEEEeCCCccccHHHHHHHHHHHHHHcCCCce-Eee-c----------CCChHHHHHHHHHHHHHcCCCC
Confidence 345566542 23333222122356788888999988887432 211 1 1223334455666 77654 6
Q ss_pred CCEEEeeCCCCCCCCchHHHHHHHHHHHHHccCC--CCccEEE
Q 025126 139 IDLIITFDNYGVSGHCNHRDVHHGICRSYLNGTS--ERNIEAW 179 (257)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~~--~~~~~~y 179 (257)
||.|++.+ |.. +..+.+|+.+.+. |+++.+.
T Consensus 185 ~~ai~~~~--------d~~--A~g~~~al~~~g~~vP~di~vv 217 (285)
T 3c3k_A 185 PDAIFAIS--------DVL--AAGAIQALTESGLSIPQDVAVV 217 (285)
T ss_dssp CSEEEESS--------HHH--HHHHHHHHHHTTCCTTTTCEEE
T ss_pred CeEEEECC--------HHH--HHHHHHHHHHcCCCCCCceEEE
Confidence 89998872 222 3445566655442 3555554
No 88
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=42.39 E-value=1.5e+02 Score=25.33 Aligned_cols=79 Identities=8% Similarity=0.041 Sum_probs=46.8
Q ss_pred chHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEEeeCCCCCCCCchHHHHHH
Q 025126 83 MGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLIITFDNYGVSGHCNHRDVHH 161 (257)
Q Consensus 83 ~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~d~~g~d~H~DH~~~~~ 161 (257)
....|.+...++++..|++.....+.... .|+.+...+.+.+++++. +||.||+.+ |. .+.
T Consensus 220 ~~~~R~~Gf~~al~~~g~~~~~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~ai~~~n--------D~--~A~ 281 (366)
T 3h5t_A 220 VQRDRVRGAMEVFIEAGIDPGTVPIMECW--------INNRQHNFEVAKELLETHPDLTAVLCTV--------DA--LAF 281 (366)
T ss_dssp THHHHHHHHHHHHHHHTCCGGGSCEEEES--------SCCHHHHHHHHHHHHHHCTTCCEEEESS--------HH--HHH
T ss_pred hHHHHHHHHHHHHHHCCCCCCcceEEEcC--------CCCHHHHHHHHHHHHcCCCCCcEEEECC--------cH--HHH
Confidence 35779999999999999853321111111 134455556667777654 689999872 33 334
Q ss_pred HHHHHHHccCC--CCccEEE
Q 025126 162 GICRSYLNGTS--ERNIEAW 179 (257)
Q Consensus 162 av~~A~~~~~~--~~~~~~y 179 (257)
.+.+|+.+.+. |.++.+.
T Consensus 282 g~~~al~~~G~~vP~disvi 301 (366)
T 3h5t_A 282 GVLEYLKSVGKSAPADLSLT 301 (366)
T ss_dssp HHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHHcCCCCCCceEEE
Confidence 45666655542 3555544
No 89
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=41.66 E-value=1.2e+02 Score=25.96 Aligned_cols=75 Identities=11% Similarity=0.045 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEEeeCCCCCCCCchHHHHHHH
Q 025126 84 GNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLIITFDNYGVSGHCNHRDVHHG 162 (257)
Q Consensus 84 ~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~d~~g~d~H~DH~~~~~a 162 (257)
...|.+-..++++..|++...+ .. ..|+.+.-.+.+.+++++. +|+.||+.+ |. .+..
T Consensus 194 ~~~R~~Gf~~al~~~gi~~~~~-~~----------~~~~~~~~~~~~~~ll~~~~~~~ai~~~n--------D~--~A~g 252 (349)
T 1jye_A 194 ARLRLAGWHKYLTRNQIQPIAE-RE----------GDWSAMSGFQQTMQMLNEGIVPTAMLVAN--------DQ--MALG 252 (349)
T ss_dssp HHHHHHHHHHHHHHTTCCCSEE-EE----------CCSSHHHHHHHHHHHHHTTCCCSEEEESS--------HH--HHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccc-cc----------CCCChHHHHHHHHHHHhCCCCCCEEEECC--------hH--HHHH
Confidence 4668888888888888742211 10 1234444455666777653 689998872 33 3344
Q ss_pred HHHHHHccCC--CCccEEE
Q 025126 163 ICRSYLNGTS--ERNIEAW 179 (257)
Q Consensus 163 v~~A~~~~~~--~~~~~~y 179 (257)
+.+|+.+.+. |.++.+.
T Consensus 253 ~~~al~~~G~~vP~disvv 271 (349)
T 1jye_A 253 AMRAITESGLRVGADISVV 271 (349)
T ss_dssp HHHHHHHTTCCBTTTBEEE
T ss_pred HHHHHHHcCCCCCCcEEEE
Confidence 5666655542 3455443
No 90
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=41.34 E-value=1.1e+02 Score=26.42 Aligned_cols=86 Identities=14% Similarity=0.156 Sum_probs=53.7
Q ss_pred HHHHHhCCCcEEEEEEeCCCCC-CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcC
Q 025126 60 INYLTSRRHNLHILCMSNGNAD-GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCS 138 (257)
Q Consensus 60 l~~~~~~G~~V~vv~lT~G~~~-~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~ 138 (257)
+..+.++|....+.++--|+.. .....|.+ .++|+.+|+ +.....+|.. -+.+++.+.|.++-..-+
T Consensus 24 v~~l~~~~~~P~Lavilvg~dpaS~~Yv~~k--~k~~~~~Gi---~~~~~~lp~~-------~s~~ell~~I~~lN~d~~ 91 (285)
T 3p2o_A 24 NQFLKSKGIESCLAVILVGDNPASQTYVKSK--AKACEECGI---KSLVYHLNEN-------ITQNELLALINTLNHDDS 91 (285)
T ss_dssp HHHHHTTTCCCEEEEEEESCCHHHHHHHHHH--HHHHHHHTC---EEEEEEECTT-------CCHHHHHHHHHHHHHCTT
T ss_pred HHHHHhcCCCCeEEEEEeCCCHHHHHHHHHH--HHHHHHcCC---eEEEEECCCC-------CCHHHHHHHHHHHhCCCC
Confidence 4455556666666666666542 23334443 589999999 5556666541 145778888888777667
Q ss_pred CCEEEeeCCCCCCCCchHHHH
Q 025126 139 IDLIITFDNYGVSGHCNHRDV 159 (257)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~~ 159 (257)
.+=|+.+-|.. .|.|-..+
T Consensus 92 v~GIlvqlPlp--~~id~~~v 110 (285)
T 3p2o_A 92 VHGILVQLPLP--DHICKDLI 110 (285)
T ss_dssp CCEEEECSCCC--TTSCHHHH
T ss_pred CCEEEecCCCC--CCcCHHHH
Confidence 77788774433 56665543
No 91
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A
Probab=41.14 E-value=1.1e+02 Score=27.31 Aligned_cols=87 Identities=15% Similarity=0.100 Sum_probs=57.3
Q ss_pred HHHHHHHhCC-----CcEEEEEEeCCCCC-----------CchHHHHHHHHHHHHHcCCCCCcEEEccCCC---CCCCc-
Q 025126 58 PTINYLTSRR-----HNLHILCMSNGNAD-----------GMGNIRKDELHRACAVLKIPLEQVKVLDLVD---FQDGF- 117 (257)
Q Consensus 58 gtl~~~~~~G-----~~V~vv~lT~G~~~-----------~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d---~~dg~- 117 (257)
+.+.++.++- .=++-++++.|+.. ..+-.+-.|..+-+..+|+ ..+...+.|+ .+|..
T Consensus 25 ~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~~I~SMPGv~r~sid~l~~~~~~~~~lGi--~~v~LFgv~~~~~~KD~~g 102 (342)
T 1h7n_A 25 PLLRQWQSERQLTKNMLIFPLFISDNPDDFTEIDSLPNINRIGVNRLKDYLKPLVAKGL--RSVILFGVPLIPGTKDPVG 102 (342)
T ss_dssp HHHHHHTCSSCCCGGGEEEEEEEESSTTCEEECTTSTTCEEECHHHHHHHHHHHHHTTC--CEEEEEEECCSTTCCBTTC
T ss_pred HHHHHHHhcCcCCHHHceeeEEEecCCCCceeCCCCCCceeeCHHHHHHHHHHHHHCCC--CEEEEecccCccCCCCccc
Confidence 5677777542 23777888998753 1234455555666677999 5677777743 34422
Q ss_pred cccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 025126 118 DKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (257)
Q Consensus 118 ~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (257)
.+.|+.+-++.+-.+.|++.-||+++..|
T Consensus 103 s~A~~~~g~v~rair~iK~~~pdl~VitD 131 (342)
T 1h7n_A 103 TAADDPAGPVIQGIKFIREYFPELYIICD 131 (342)
T ss_dssp GGGGCTTSHHHHHHHHHHHHCTTSEEEEE
T ss_pred cccCCCCChHHHHHHHHHHHCCCeEEEEe
Confidence 23477788888878888888899877655
No 92
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=41.13 E-value=1.5e+02 Score=24.30 Aligned_cols=98 Identities=9% Similarity=0.189 Sum_probs=55.2
Q ss_pred HHHHhC-C-CcEEEEEEeCCCCCCchHHHHHHHHHHHHHc-CCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc
Q 025126 61 NYLTSR-R-HNLHILCMSNGNADGMGNIRKDELHRACAVL-KIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC 137 (257)
Q Consensus 61 ~~~~~~-G-~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~L-Gv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~ 137 (257)
..+.+. | ..-.+.+++..........|.+-..++++.. |++ +...-. ..|+.+...+.+.+++++.
T Consensus 123 ~~L~~~~G~~~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~g~~---~~~~~~--------~~~~~~~~~~~~~~ll~~~ 191 (288)
T 1gud_A 123 SFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQIK---LVASQP--------ADWDRIKALDVATNVLQRN 191 (288)
T ss_dssp HHHHHHHGGGCEEEEEEECSTTCHHHHHHHHHHHHHHHTCTTEE---EEEEEE--------CTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCCEEEEEeCCCCCchHhHHHHHHHHHHHhCCCcE---EEEeec--------CCccHHHHHHHHHHHHHhC
Confidence 344556 7 2234555543222223467888899998876 662 211100 1245555566677777764
Q ss_pred -CCCEEEeeCCCCCCCCchHHHHHHHHHHHHHccCCCCccEEE
Q 025126 138 -SIDLIITFDNYGVSGHCNHRDVHHGICRSYLNGTSERNIEAW 179 (257)
Q Consensus 138 -~Pd~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~~~~~~~~y 179 (257)
+|+.|++.+ |. .+..+.+|+.+.+.+.++.+.
T Consensus 192 ~~~~ai~~~n--------D~--~A~g~~~al~~~G~~~dv~vv 224 (288)
T 1gud_A 192 PNIKAIYCAN--------DT--MAMGVAQAVANAGKTGKVLVV 224 (288)
T ss_dssp TTCCEEEESS--------HH--HHHHHHHHHHHTTCTTTSEEE
T ss_pred CCceEEEECC--------Cc--hHHHHHHHHHhcCCCCCeEEE
Confidence 589998872 22 345567777666655556554
No 93
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=40.82 E-value=26 Score=28.42 Aligned_cols=38 Identities=11% Similarity=0.214 Sum_probs=26.9
Q ss_pred CcEEEEecCchhhh-cchHHHHHHHHhCCCcEEEEEEeC
Q 025126 40 KNVLLVIAHPDDES-MFFSPTINYLTSRRHNLHILCMSN 77 (257)
Q Consensus 40 ~~vL~i~aHPDDE~-l~~Ggtl~~~~~~G~~V~vv~lT~ 77 (257)
+++|+|.+||+-+. -.+...+..+.+.|.+|.++-+.+
T Consensus 2 mkiLiI~gsp~~~~s~l~~~l~~~~~~~g~ev~~~dL~~ 40 (192)
T 3f2v_A 2 PKTLIILAHPNISQSTVHKHWSDAVRQHTDRFTVHELYA 40 (192)
T ss_dssp CCEEEEECCTTGGGCSHHHHHHHHHTTCTTTEEEEEHHH
T ss_pred CEEEEEEeCCCccHHHHHHHHHHHHHhCCCeEEEEEchh
Confidence 57999999999774 223344444556688899888753
No 94
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=40.42 E-value=69 Score=28.10 Aligned_cols=85 Identities=14% Similarity=0.274 Sum_probs=49.8
Q ss_pred CCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCC-Cch-HHHHHHHHHHHHHcCCCCCcEEEccCCCCCCC
Q 025126 39 KKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNAD-GMG-NIRKDELHRACAVLKIPLEQVKVLDLVDFQDG 116 (257)
Q Consensus 39 ~~~vL~i~aHPDDE~l~~Ggtl~~~~~~G~~V~vv~lT~G~~~-~~~-~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg 116 (257)
..||++++.. | |.-++|..+.++|++|. .++|+.+.. +-+ +.......+.|..+|++ + +...+.
T Consensus 7 ~mrivf~Gt~--~---fa~~~L~~L~~~~~~v~-~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIp---v--~~~~~~--- 72 (318)
T 3q0i_A 7 SLRIVFAGTP--D---FAARHLAALLSSEHEII-AVYTQPERPAGRGKKLTASPVKTLALEHNVP---V--YQPENF--- 72 (318)
T ss_dssp CCEEEEECCS--H---HHHHHHHHHHTSSSEEE-EEECCCC---------CCCHHHHHHHHTTCC---E--ECCSCS---
T ss_pred CCEEEEEecC--H---HHHHHHHHHHHCCCcEE-EEEcCCCCcccccccCCCCHHHHHHHHcCCC---E--EccCcC---
Confidence 4688888874 2 23478889999998874 455654431 111 11223456678889994 2 221121
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 025126 117 FDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (257)
Q Consensus 117 ~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (257)
..+ .+.+.+++.+||++++..
T Consensus 73 -----~~~----~~~~~l~~~~~Dliv~~~ 93 (318)
T 3q0i_A 73 -----KSD----ESKQQLAALNADLMVVVA 93 (318)
T ss_dssp -----CSH----HHHHHHHTTCCSEEEESS
T ss_pred -----CCH----HHHHHHHhcCCCEEEEeC
Confidence 112 345678889999998774
No 95
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=40.14 E-value=73 Score=26.24 Aligned_cols=98 Identities=11% Similarity=0.054 Sum_probs=52.8
Q ss_pred HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CC
Q 025126 61 NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SI 139 (257)
Q Consensus 61 ~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~P 139 (257)
..+.+.|++- +.+++..........|.+...++++..|.+ ....-.. .|+.+...+.+.+++++. +|
T Consensus 131 ~~L~~~G~~~-I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~---~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~ 198 (293)
T 2iks_A 131 EELRKFPAET-VLYLGALPELSVSFLREQGFRTAWKDDPRE---VHFLYAN--------SYEREAAAQLFEKWLETHPMP 198 (293)
T ss_dssp HHHHTSCCSS-EEEEEECTTSHHHHHHHHHHHHHHTTCCCC---EEEEEES--------SSCHHHHHHHHHHHTTTSCCC
T ss_pred HHHHHCCCCE-EEEEecCcccccHHHHHHHHHHHHHHcCCC---ccEEEcC--------CCChhhHHHHHHHHHhcCCCC
Confidence 3556677542 233332212223567888899999988872 2211111 134455556677777654 58
Q ss_pred CEEEeeCCCCCCCCchHHHHHHHHHHHHHccC--CCCccEEEE
Q 025126 140 DLIITFDNYGVSGHCNHRDVHHGICRSYLNGT--SERNIEAWE 180 (257)
Q Consensus 140 d~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~--~~~~~~~ye 180 (257)
+.|++.+ |. .+..+.+|+.+.+ -+.++.+.-
T Consensus 199 ~ai~~~~--------d~--~a~g~~~al~~~g~~vP~di~vvg 231 (293)
T 2iks_A 199 QALFTTS--------FA--LLQGVMDVTLRRDGKLPSDLAIAT 231 (293)
T ss_dssp SEEEESS--------HH--HHHHHHHHHHHHHSSCCSSCEEEE
T ss_pred CEEEECC--------hH--HHHHHHHHHHHcCCCCCCceEEEE
Confidence 9998872 33 2334555554443 245665543
No 96
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=39.87 E-value=64 Score=25.57 Aligned_cols=40 Identities=15% Similarity=0.064 Sum_probs=25.4
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEeeCCCCCC-CCchHHHHHHHHHH
Q 025126 122 NHKSLAKIVEEEVVNCSIDLIITFDNYGVS-GHCNHRDVHHGICR 165 (257)
Q Consensus 122 ~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d-~H~DH~~~~~av~~ 165 (257)
+.+.+.+.|.+.+.+.+.|+|+|. .|.+ ++-|+ +.+++.+
T Consensus 52 d~~~I~~~l~~~~~~~~~DlVitt--GG~g~g~~D~--t~ea~~~ 92 (178)
T 2pbq_A 52 ERDLIEKTLIELADEKGCSLILTT--GGTGPAPRDV--TPEATEA 92 (178)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEEE--SCCSSSTTCC--HHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEC--CCCCCCCCCc--hHHHHHH
Confidence 346777888888775578999998 4432 44554 3344443
No 97
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=39.82 E-value=68 Score=27.25 Aligned_cols=98 Identities=11% Similarity=0.056 Sum_probs=54.1
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh-cCCC
Q 025126 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN-CSID 140 (257)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~-~~Pd 140 (257)
.|.+.|++ .+.+++..........|.+-..++++..|++...... . ...|+.+...+.+.+++++ -+||
T Consensus 171 ~L~~~G~~-~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~--~-------~~~~~~~~~~~~~~~ll~~~~~~~ 240 (340)
T 1qpz_A 171 YLIERGHR-EIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWI--V-------QGDFEPESGYRAMQQILSQPHRPT 240 (340)
T ss_dssp HHHHHTCC-CEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGGGB--C-------CCCSSHHHHHHHHHHHHTSSSCCS
T ss_pred HHHHCCCC-EEEEEeCCCccccHHHHHHHHHHHHHHCCCCCChhhe--E-------eCCCCHHHHHHHHHHHHcCCCCCc
Confidence 45566765 3344432212223567888899999998874211100 0 0124555556667777775 4689
Q ss_pred EEEeeCCCCCCCCchHHHHHHHHHHHHHccCC--CCccEEE
Q 025126 141 LIITFDNYGVSGHCNHRDVHHGICRSYLNGTS--ERNIEAW 179 (257)
Q Consensus 141 ~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~~--~~~~~~y 179 (257)
.|++.+ |.. +..+.+|+.+.+. +.++.+.
T Consensus 241 ai~~~n--------d~~--A~g~~~al~~~G~~vP~disvi 271 (340)
T 1qpz_A 241 AVFCGG--------DIM--AMGALCAADEMGLRVPQDVSLI 271 (340)
T ss_dssp EEEESS--------HHH--HHHHHHHHHHTTCCTTTTCEEE
T ss_pred EEEECC--------HHH--HHHHHHHHHHcCCCCCCCeEEE
Confidence 999872 333 3345666655542 3555544
No 98
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=39.52 E-value=96 Score=27.20 Aligned_cols=79 Identities=13% Similarity=0.138 Sum_probs=51.4
Q ss_pred CCcEEEEEEeCCCCC-CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEee
Q 025126 67 RHNLHILCMSNGNAD-GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITF 145 (257)
Q Consensus 67 G~~V~vv~lT~G~~~-~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (257)
|....+.++.-|+.. .....|.+ .++|+.+|+ +.....+|.. -+.+++.+.|.++-+.-+.+=|+.+
T Consensus 51 g~~P~LavIlVG~dpaS~~Yv~~K--~k~c~~vGi---~s~~~~lp~~-------~se~ell~~I~~LN~D~~V~GIlVQ 118 (303)
T 4b4u_A 51 GRTPILATILVGDDGASATYVRMK--GNACRRVGM---DSLKIELPQE-------TTTEQLLAEIEKLNANPDVHGILLQ 118 (303)
T ss_dssp SCCCEEEEEEESCCHHHHHHHHHH--HHHHHHTTC---EEEEEEECTT-------CCHHHHHHHHHHHHTCTTCCEEEEC
T ss_pred CCCCcEEEEEeCCCHHHHHHHHHH--HHHHHHcCC---eEEEEecCcc-------CCHHHHHHHHHHhcCCCCccEEEEe
Confidence 666666666666542 23344544 479999999 4555565541 2567888888888777677778888
Q ss_pred CCCCCCCCchHHHH
Q 025126 146 DNYGVSGHCNHRDV 159 (257)
Q Consensus 146 d~~g~d~H~DH~~~ 159 (257)
-|. -.|.|-..+
T Consensus 119 lPL--P~hid~~~i 130 (303)
T 4b4u_A 119 HPV--PAQIDERAC 130 (303)
T ss_dssp SSC--CTTSCHHHH
T ss_pred CCC--ccccChHHH
Confidence 444 367776554
No 99
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=39.25 E-value=1e+02 Score=25.16 Aligned_cols=98 Identities=10% Similarity=0.005 Sum_probs=54.6
Q ss_pred HHHhCCC---cEEEEEEeC-CCCC-CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh
Q 025126 62 YLTSRRH---NLHILCMSN-GNAD-GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN 136 (257)
Q Consensus 62 ~~~~~G~---~V~vv~lT~-G~~~-~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~ 136 (257)
.+.+.|+ +|.++.... |..+ .....|.+-..++++..|.+.+ ....... .|+.+...+.+.+++++
T Consensus 127 ~l~~~g~~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~-~~~~~~~--------~~~~~~~~~~~~~~l~~ 197 (304)
T 3gbv_A 127 MLMLLAVNDREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPACN-ILELNLH--------ADLNIEDSRMLDDFFRE 197 (304)
T ss_dssp HHHHHSTTCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSE-EEEEEEE--------SSCSSCHHHHHHHHHHH
T ss_pred HHHHHhCCCCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCcE-EEEeeec--------CCCHHHHHHHHHHHHHh
Confidence 4556665 444443322 4433 2457799999999999987432 2211111 12333445667777776
Q ss_pred c-CCCEEEeeCCCCCCCCchHHHHHHHHHHHHHccCCCCccEEEE
Q 025126 137 C-SIDLIITFDNYGVSGHCNHRDVHHGICRSYLNGTSERNIEAWE 180 (257)
Q Consensus 137 ~-~Pd~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~~~~~~~~ye 180 (257)
. +|+.|++.+ |. + ..+.+|+.+.+. .++.+.-
T Consensus 198 ~~~~~ai~~~~--------d~-a--~g~~~al~~~g~-~di~vig 230 (304)
T 3gbv_A 198 HPDVKHGITFN--------SK-V--YIIGEYLQQRRK-SDFSLIG 230 (304)
T ss_dssp CTTCCEEEESS--------SC-T--HHHHHHHHHTTC-CSCEEEE
T ss_pred CCCeEEEEEcC--------cc-h--HHHHHHHHHcCC-CCcEEEE
Confidence 5 689999883 12 1 235555555554 5665543
No 100
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=39.13 E-value=1.2e+02 Score=24.95 Aligned_cols=88 Identities=14% Similarity=0.132 Sum_probs=49.5
Q ss_pred CCCCcEEEEecCchhhhcchHHHHH-HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCC
Q 025126 37 GDKKNVLLVIAHPDDESMFFSPTIN-YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQD 115 (257)
Q Consensus 37 ~~~~~vL~i~aHPDDE~l~~Ggtl~-~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~d 115 (257)
.++|++|+..|=- .-|.|-.++ +++++|.+|.+..-+ +...+|..+.++.+|-. ++.++.. |..
T Consensus 4 l~gK~alVTGaa~---~~GIG~aiA~~la~~Ga~Vvi~~r~--------~~~~~~~~~~~~~~~~~--~~~~~~~-Dv~- 68 (256)
T 4fs3_A 4 LENKTYVIMGIAN---KRSIAFGVAKVLDQLGAKLVFTYRK--------ERSRKELEKLLEQLNQP--EAHLYQI-DVQ- 68 (256)
T ss_dssp CTTCEEEEECCCS---TTCHHHHHHHHHHHTTCEEEEEESS--------GGGHHHHHHHHGGGTCS--SCEEEEC-CTT-
T ss_pred CCCCEEEEECCCC---CchHHHHHHHHHHHCCCEEEEEECC--------HHHHHHHHHHHHhcCCC--cEEEEEc-cCC-
Confidence 3456777776531 134555454 567899987665422 23445666666667652 3433321 221
Q ss_pred CccccCChHHHHHHHHHHHHhc-CCCEEEee
Q 025126 116 GFDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (257)
Q Consensus 116 g~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (257)
+.+++.+.+.+..+++ ++|+++--
T Consensus 69 ------~~~~v~~~~~~~~~~~G~iD~lvnn 93 (256)
T 4fs3_A 69 ------SDEEVINGFEQIGKDVGNIDGVYHS 93 (256)
T ss_dssp ------CHHHHHHHHHHHHHHHCCCSEEEEC
T ss_pred ------CHHHHHHHHHHHHHHhCCCCEEEec
Confidence 3456666667777665 57877643
No 101
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A
Probab=38.79 E-value=78 Score=28.54 Aligned_cols=51 Identities=10% Similarity=0.054 Sum_probs=32.0
Q ss_pred HHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCC
Q 025126 90 ELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSID 140 (257)
Q Consensus 90 E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd 140 (257)
.+.+.++.+|.+.+++..|-..+...+.......+.+.+.+..++++.+|+
T Consensus 118 ~m~~~L~~~GF~~~~i~~L~D~~~~p~~~~~pTr~nI~~aL~~L~~~a~pg 168 (367)
T 4af8_A 118 QMLATLQKRGLPINEAVILVDEDNFPGRTDQPTRDNIVRYMAWLVKDAKPG 168 (367)
T ss_dssp HHHHHHHHTTCCCSEEEEEECCTTCTTCCBCCCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHcCCCchheEEecccccccccccCCCHHHHHHHHHHHHHhCCCC
Confidence 345566668987777777654321111112235678889999999988874
No 102
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=38.62 E-value=58 Score=27.55 Aligned_cols=89 Identities=15% Similarity=0.047 Sum_probs=47.6
Q ss_pred HHHhCCCcEEEEEEeCCC-CCCchHHHHHHHHHHHHHcCCCCCc-EEEccCCCCCCCccccCChHHHHHHHHHHHHhc-C
Q 025126 62 YLTSRRHNLHILCMSNGN-ADGMGNIRKDELHRACAVLKIPLEQ-VKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-S 138 (257)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~-~~~~~~~R~~E~~~A~~~LGv~~~~-~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~ 138 (257)
.+.+.|++ .+.+++... .......|.+-..++++..|++... ..+. ..|+.+...+.+.+++++. +
T Consensus 171 ~L~~~G~~-~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~----------~~~~~~~~~~~~~~ll~~~~~ 239 (332)
T 2hsg_A 171 SLIDSGHK-NIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVE----------GDYTYDSGIEAVEKLLEEDEK 239 (332)
T ss_dssp HHHTTTCS-CEEEEESCTTSHHHHTTHHHHHHHHHHTTTCCCCGGGEEE----------CCSSHHHHHHHHHHHHHSSSC
T ss_pred HHHHCCCC-EEEEEeCCcccCccHHHHHHHHHHHHHHcCCCCChheEEe----------CCCCHHHHHHHHHHHHcCCCC
Confidence 45566754 233333221 1122456778888888888874221 1111 1134455556677777764 6
Q ss_pred CCEEEeeCCCCCCCCchHHHHHHHHHHHHHccC
Q 025126 139 IDLIITFDNYGVSGHCNHRDVHHGICRSYLNGT 171 (257)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~ 171 (257)
||.|++.+ |..+ ..+.+|+.+.+
T Consensus 240 ~~ai~~~n--------d~~A--~g~~~al~~~G 262 (332)
T 2hsg_A 240 PTAIFVGT--------DEMA--LGVIHGAQDRG 262 (332)
T ss_dssp CSEEEESS--------HHHH--HHHHHHHHHTT
T ss_pred CeEEEECC--------hHHH--HHHHHHHHHcC
Confidence 89998762 3333 34566665554
No 103
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=38.37 E-value=1.1e+02 Score=26.78 Aligned_cols=85 Identities=20% Similarity=0.237 Sum_probs=49.7
Q ss_pred CCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCC-Cc-hHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCC
Q 025126 39 KKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNAD-GM-GNIRKDELHRACAVLKIPLEQVKVLDLVDFQDG 116 (257)
Q Consensus 39 ~~~vL~i~aHPDDE~l~~Ggtl~~~~~~G~~V~vv~lT~G~~~-~~-~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg 116 (257)
.+||++++.. | |.-++|..|.++|++|. .++|..+.. +- .+.......+.|..+|++ + +...+..
T Consensus 4 mmrIvf~Gtp--~---fa~~~L~~L~~~~~~v~-~Vvt~pd~~~gRg~~l~~~pv~~~A~~~gIp---v--~~~~~~~-- 70 (317)
T 3rfo_A 4 MIKVVFMGTP--D---FSVPVLRRLIEDGYDVI-GVVTQPDRPVGRKKVLTPTPVKVEAEKHGIP---V--LQPLRIR-- 70 (317)
T ss_dssp TSEEEEECCS--T---THHHHHHHHHHTTCEEE-EEECCCCCEETTTTEECCCHHHHHHHHTTCC---E--ECCSCTT--
T ss_pred ceEEEEEeCC--H---HHHHHHHHHHHCCCcEE-EEEeCCCcccCCCcccCCCHHHHHHHHcCCC---E--EccccCC--
Confidence 4688888765 1 34588999999998874 445655431 11 111223456677889994 2 2211211
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 025126 117 FDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (257)
Q Consensus 117 ~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (257)
+ ++. .+.+++++||++++..
T Consensus 71 -----~-~~~----~~~l~~~~~Dliv~~~ 90 (317)
T 3rfo_A 71 -----E-KDE----YEKVLALEPDLIVTAA 90 (317)
T ss_dssp -----S-HHH----HHHHHHHCCSEEEESS
T ss_pred -----C-HHH----HHHHHhcCCCEEEEcC
Confidence 1 222 3456778999988774
No 104
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=37.91 E-value=1.2e+02 Score=24.62 Aligned_cols=74 Identities=11% Similarity=0.135 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh--cCCCEEEeeCCCCCCCCchHHHHHH
Q 025126 84 GNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN--CSIDLIITFDNYGVSGHCNHRDVHH 161 (257)
Q Consensus 84 ~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~--~~Pd~V~t~d~~g~d~H~DH~~~~~ 161 (257)
...|.+...++++..|++ +.... ..|+.+...+.+.+++++ -+||.|++.+ |. .+.
T Consensus 133 ~~~R~~gf~~~l~~~g~~---~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~--------d~--~a~ 190 (277)
T 3cs3_A 133 SQERLAVSTRELTRFGIP---YEIIQ---------GDFTEPSGYAAAKKILSQPQTEPVDVFAFN--------DE--MAI 190 (277)
T ss_dssp HHHHHHHHHHHHHHTTCC---EEEEE---------CCSSHHHHHHHHHHHTTSCCCSSEEEEESS--------HH--HHH
T ss_pred HHHHHHHHHHHHHHcCCC---eeEEe---------CCCChhHHHHHHHHHHhcCCCCCcEEEEcC--------hH--HHH
Confidence 456777888888888873 21111 113445555667777765 3688888762 22 334
Q ss_pred HHHHHHHccCC--CCccEEE
Q 025126 162 GICRSYLNGTS--ERNIEAW 179 (257)
Q Consensus 162 av~~A~~~~~~--~~~~~~y 179 (257)
.+.+|+.+.+. +.++.+.
T Consensus 191 g~~~al~~~g~~vP~di~vv 210 (277)
T 3cs3_A 191 GVYKYVAETNYQMGKDIRII 210 (277)
T ss_dssp HHHHHHTTSSCCBTTTEEEE
T ss_pred HHHHHHHHcCCCCCCcEEEE
Confidence 45666655542 2455443
No 105
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=37.88 E-value=72 Score=25.89 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=23.1
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEeeCCCCCC-CCchH
Q 025126 122 NHKSLAKIVEEEVVNCSIDLIITFDNYGVS-GHCNH 156 (257)
Q Consensus 122 ~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d-~H~DH 156 (257)
+.+.+.+.|.+.+.+.+.|+|+|. .|.+ ++-|+
T Consensus 50 d~~~I~~al~~a~~~~~~DlVitT--GGtg~g~~D~ 83 (195)
T 1di6_A 50 EQAIIEQTLCELVDEMSCHLVLTT--GGTGPARRDV 83 (195)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEEE--SCCSSSTTCC
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEC--CCCCCCCCcc
Confidence 346778888888876678999998 4432 44454
No 106
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=37.81 E-value=1.4e+02 Score=26.11 Aligned_cols=63 Identities=17% Similarity=0.193 Sum_probs=39.4
Q ss_pred CCCCCcEEEEec--CchhhhcchHHHHHHHHhCCCcEEEEEEeCCC---CCCchHHHHHHHHHHHHHcCC
Q 025126 36 TGDKKNVLLVIA--HPDDESMFFSPTINYLTSRRHNLHILCMSNGN---ADGMGNIRKDELHRACAVLKI 100 (257)
Q Consensus 36 ~~~~~~vL~i~a--HPDDE~l~~Ggtl~~~~~~G~~V~vv~lT~G~---~~~~~~~R~~E~~~A~~~LGv 100 (257)
+.++.+|-+|+| -.+.+.+ --.+.++.+.|.+|.+--.+... ..+-.+.|.+|+.+|.+-=.+
T Consensus 14 L~~Gd~I~ivaPSs~~~~~~~--~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i 81 (311)
T 1zl0_A 14 QPIDGRVALIAPASAIATDVL--EATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDI 81 (311)
T ss_dssp CCCCSEEEEECCSBCCCHHHH--HHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTE
T ss_pred CCCcCEEEEEeCCCCCCHHHH--HHHHHHHHhCCCEEEECccccccccccCCCHHHHHHHHHHHHhCCCC
Confidence 456677888877 2333433 55677888889887653222211 135678899999988865444
No 107
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=36.81 E-value=80 Score=28.09 Aligned_cols=91 Identities=18% Similarity=0.203 Sum_probs=55.3
Q ss_pred CcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHH-HHHcCCCCCcEEEccCCCCCCCcc
Q 025126 40 KNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRA-CAVLKIPLEQVKVLDLVDFQDGFD 118 (257)
Q Consensus 40 ~~vL~i~aHPDDE~l~~Ggtl~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A-~~~LGv~~~~~~~l~~~d~~dg~~ 118 (257)
+-..++++-|+=.- +.+.+..+.+. .+ ..++.| | .-+..++.+. .+.+|++..+ +.|+-.. + +..
T Consensus 11 ~~~~v~GtRpe~~k--~~p~~~~l~~~-~~-~~~~~t-g------qh~~~~~~~~~~~~~~i~~~~-~~l~~~~-~-~~~ 76 (385)
T 4hwg_A 11 KVMTIVGTRPELIK--LCCVISEFDKH-TK-HILVHT-G------QNYAYELNQVFFDDMGIRKPD-YFLEVAA-D-NTA 76 (385)
T ss_dssp EEEEEECSHHHHHH--HHHHHHHHHHH-SE-EEEEEC-S------CHHHHHHTHHHHC-CCCCCCS-EECCCCC-C-CSH
T ss_pred heeEEEEcCHhHHH--HHHHHHHHHhc-CC-EEEEEe-C------CCCChhHHHHHHhhCCCCCCc-eecCCCC-C-CHH
Confidence 34566777776444 68899998876 44 234444 4 2355566664 4678884223 3566421 1 111
Q ss_pred ccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 025126 119 KLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (257)
Q Consensus 119 ~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (257)
+ ....+...+.+++++.+||+|++++
T Consensus 77 ~--~~~~~~~~l~~~l~~~kPD~Vlv~g 102 (385)
T 4hwg_A 77 K--SIGLVIEKVDEVLEKEKPDAVLFYG 102 (385)
T ss_dssp H--HHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred H--HHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 1 1235667889999999999999983
No 108
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=36.59 E-value=1.8e+02 Score=24.79 Aligned_cols=95 Identities=16% Similarity=0.135 Sum_probs=51.2
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCE
Q 025126 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDL 141 (257)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~ 141 (257)
.|.+.|++ .+.+++..........|.+...++++..|++ ..+.+. . .|+.+...+.+.+++++..| .
T Consensus 178 ~L~~~G~~-~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~-~~~v~~--~--------~~~~~~~~~~~~~ll~~~~~-a 244 (348)
T 3bil_A 178 LLAHNNAL-PIGYLSGPMDTSTGRERLEDFKAACANSKIG-EQLVFL--G--------GYEQSVGFEGATKLLDQGAK-T 244 (348)
T ss_dssp HHHHTTCC-SEEEECCCTTSHHHHHHHHHHHHHHHHTTCC-CCEEEC--C--------CSSHHHHHHHHHHHHHTTCS-E
T ss_pred HHHHCCCC-eEEEEeCCCCCccHHHHHHHHHHHHHHcCcC-ccEEEc--C--------CCCHHHHHHHHHHHHcCCCC-E
Confidence 45566754 2333332211223567888889999988873 222221 1 13445555667777776557 7
Q ss_pred EEeeCCCCCCCCchHHHHHHHHHHHHHccCC--CCccEEE
Q 025126 142 IITFDNYGVSGHCNHRDVHHGICRSYLNGTS--ERNIEAW 179 (257)
Q Consensus 142 V~t~d~~g~d~H~DH~~~~~av~~A~~~~~~--~~~~~~y 179 (257)
||+.+ |- .+..+.+|+.+.+. |.++.+.
T Consensus 245 i~~~n--------D~--~A~g~~~al~~~G~~vP~disvv 274 (348)
T 3bil_A 245 LFAGD--------SM--MTIGVIEACHKAGLVIGKDVSVI 274 (348)
T ss_dssp EEESS--------HH--HHHHHHHHHHHTTCCBTTTBEEE
T ss_pred EEEcC--------hH--HHHHHHHHHHHcCCCCCCCeEEE
Confidence 77762 32 33445666655442 3555544
No 109
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A
Probab=36.54 E-value=75 Score=28.20 Aligned_cols=87 Identities=15% Similarity=0.134 Sum_probs=51.6
Q ss_pred HHHHHHHh-CC-----CcEEEEEEeCCCCC--------C---chHHHHHHHHHHHHHcCCCCCcEEEccCCCC--CCCc-
Q 025126 58 PTINYLTS-RR-----HNLHILCMSNGNAD--------G---MGNIRKDELHRACAVLKIPLEQVKVLDLVDF--QDGF- 117 (257)
Q Consensus 58 gtl~~~~~-~G-----~~V~vv~lT~G~~~--------~---~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~--~dg~- 117 (257)
+.+.++.+ +- .=++-++++.|+.. | .+-.+-.|..+-+..+|+ ..+...+.|+. +|..
T Consensus 14 ~~~R~lv~~Et~L~~~dLI~PlFV~eg~~~~~~I~SMPGv~r~sid~l~~~~~~~~~~Gi--~~v~LFgvp~~~~Kd~~g 91 (330)
T 1pv8_A 14 PLLRAWQTATTTLNASNLIYPIFVTDVPDDIQPITSLPGVARYGVKRLEEMLRPLVEEGL--RCVLIFGVPSRVPKDERG 91 (330)
T ss_dssp HHHHHHHTTTTCCCGGGEEEEEEECSCTTCEEECSSSTTCEEECHHHHHHHHHHHHHHTC--CEEEEEECC---------
T ss_pred HHHHHHHhcCCccCHHHceeeEEEecCCCCccccCCCCCceeecHHHHHHHHHHHHHCCC--CEEEEecCCcccCCCccc
Confidence 46777776 22 22777888888753 1 334455555556667899 56777787764 4422
Q ss_pred cccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 025126 118 DKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (257)
Q Consensus 118 ~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (257)
.+.|+.+-++.+-.+.|++.-||+++..|
T Consensus 92 s~A~~~~g~v~~air~iK~~~pdl~vitD 120 (330)
T 1pv8_A 92 SAADSEESPAIEAIHLLRKTFPNLLVACD 120 (330)
T ss_dssp -----CCSHHHHHHHHHHHHSTTSEEEEE
T ss_pred cccCCCCChHHHHHHHHHHHCCCeEEEEe
Confidence 23467777777777788887899877655
No 110
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=36.42 E-value=1e+02 Score=25.04 Aligned_cols=79 Identities=14% Similarity=0.114 Sum_probs=42.2
Q ss_pred chHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh-cCCCEEEeeCCCCCCCCchHHHHHH
Q 025126 83 MGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN-CSIDLIITFDNYGVSGHCNHRDVHH 161 (257)
Q Consensus 83 ~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~-~~Pd~V~t~d~~g~d~H~DH~~~~~ 161 (257)
....|.+...++++..|++........ ..|+.+...+.+.+++++ -+||.|++.+ |..+ .
T Consensus 153 ~~~~R~~gf~~~l~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~ai~~~~--------d~~a--~ 213 (296)
T 3brq_A 153 TSIERLAGYKDALAQHGIALNEKLIAN---------GKWTPASGAEGVEMLLERGAKFSALVASN--------DDMA--I 213 (296)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCGGGEEC---------CCSSHHHHHHHHHHHHTC--CCSEEEESS--------HHHH--H
T ss_pred cHHHHHHHHHHHHHHcCCCCChhhEEe---------CCCChhHHHHHHHHHHhCCCCCCEEEECC--------hHHH--H
Confidence 346677778888887776321110110 123445555666777764 4689988762 3333 3
Q ss_pred HHHHHHHccCC--CCccEEEE
Q 025126 162 GICRSYLNGTS--ERNIEAWE 180 (257)
Q Consensus 162 av~~A~~~~~~--~~~~~~ye 180 (257)
.+.+|+.+.+. +.++.+.-
T Consensus 214 g~~~al~~~g~~vP~di~vvg 234 (296)
T 3brq_A 214 GAMKALHERGVAVPEQVSVIG 234 (296)
T ss_dssp HHHHHHHHHTCCTTTTCEEEE
T ss_pred HHHHHHHHcCCCCCCceEEEe
Confidence 44555554432 35555543
No 111
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=36.24 E-value=2.5e+02 Score=25.52 Aligned_cols=81 Identities=19% Similarity=0.095 Sum_probs=47.1
Q ss_pred CCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcC-CCCCcEEEccCCCCCCC
Q 025126 38 DKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLK-IPLEQVKVLDLVDFQDG 116 (257)
Q Consensus 38 ~~~~vL~i~aHPDDE~l~~Ggtl~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LG-v~~~~~~~l~~~d~~dg 116 (257)
.++|+.+.+- ||-. + +...-+.+.|.+|..+..+.++ +.-++++++.++.+| . +..++.-+|
T Consensus 311 ~gkrv~i~~~-~~~~-~---~l~~~L~elG~~vv~v~~~~~~-----~~~~~~~~~ll~~~~~~---~~~v~~~~d---- 373 (458)
T 1mio_B 311 QGKKVALLGD-PDEI-I---ALSKFIIELGAIPKYVVTGTPG-----MKFQKEIDAMLAEAGIE---GSKVKVEGD---- 373 (458)
T ss_dssp TTCEEEEEEC-HHHH-H---HHHHHHHTTTCEEEEEEESSCC-----HHHHHHHHHHHHTTTCC---SCEEEESCB----
T ss_pred CCCEEEEEcC-chHH-H---HHHHHHHHCCCEEEEEEeCCCC-----HHHHHHHHHHHHhcCCC---CCEEEECCC----
Confidence 5667766653 5433 3 4555556889998887776642 222344444455555 3 222222222
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCEEEee
Q 025126 117 FDKLWNHKSLAKIVEEEVVNCSIDLIITF 145 (257)
Q Consensus 117 ~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (257)
...+.+.+++.+||+++..
T Consensus 374 ----------~~~l~~~i~~~~pDl~ig~ 392 (458)
T 1mio_B 374 ----------FFDVHQWIKNEGVDLLISN 392 (458)
T ss_dssp ----------HHHHHHHHHHSCCSEEEES
T ss_pred ----------HHHHHHHHHhcCCCEEEeC
Confidence 1346788888999999976
No 112
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=36.09 E-value=1e+02 Score=27.02 Aligned_cols=63 Identities=13% Similarity=0.097 Sum_probs=37.9
Q ss_pred CCCCCcEEEEecC--ch---hhhcchHHHHHHHHhCCCcEEEEEEeC---CCCCCchHHHHHHHHHHHHHcCC
Q 025126 36 TGDKKNVLLVIAH--PD---DESMFFSPTINYLTSRRHNLHILCMSN---GNADGMGNIRKDELHRACAVLKI 100 (257)
Q Consensus 36 ~~~~~~vL~i~aH--PD---DE~l~~Ggtl~~~~~~G~~V~vv~lT~---G~~~~~~~~R~~E~~~A~~~LGv 100 (257)
+.++.+|-+|+|= .+ .+.+ --.+.++.+.|.+|.+---+. |-..+-.+.|.+|+.+|.+-=.+
T Consensus 9 L~~GD~I~ivaPS~~~~~~~~~~~--~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i 79 (331)
T 4e5s_A 9 LKKGDEIRVISPSCSLSIVSTENR--RLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNV 79 (331)
T ss_dssp CCTTCEEEEECSSSCGGGSCHHHH--HHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTE
T ss_pred CCCcCEEEEEeCCCCccccCHHHH--HHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCC
Confidence 4667788888653 22 3332 345677788899876422111 11125678999999998865333
No 113
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=35.93 E-value=73 Score=24.85 Aligned_cols=40 Identities=15% Similarity=0.156 Sum_probs=25.2
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEeeCCCCCC-CCchHHHHHHHHHH
Q 025126 122 NHKSLAKIVEEEVVNCSIDLIITFDNYGVS-GHCNHRDVHHGICR 165 (257)
Q Consensus 122 ~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d-~H~DH~~~~~av~~ 165 (257)
+.+.+.+.|.+.+...+.|+|+|. .|.+ ++-|+ +.+++.+
T Consensus 55 d~~~i~~~l~~~~~~~~~DlVitt--GG~g~g~~D~--t~~a~~~ 95 (167)
T 1uuy_A 55 EVERIKDILQKWSDVDEMDLILTL--GGTGFTPRDV--TPEATKK 95 (167)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEEE--SCCSSSTTCC--HHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEC--CCCCCCCCCc--hHHHHHH
Confidence 346777788877764578999998 4432 45555 3444444
No 114
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=35.65 E-value=2.6e+02 Score=26.17 Aligned_cols=82 Identities=18% Similarity=0.066 Sum_probs=47.1
Q ss_pred CCCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHH--cCCCCCcEEEccCCCCC
Q 025126 37 GDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAV--LKIPLEQVKVLDLVDFQ 114 (257)
Q Consensus 37 ~~~~~vL~i~aHPDDE~l~~Ggtl~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~--LGv~~~~~~~l~~~d~~ 114 (257)
..++|+.+. +-||=. -|+..-+.+.|.+|..+..++++ +.-.+++++.++. .|. ...++.-+|
T Consensus 362 l~GKrvaI~-gd~~~~----~~la~fL~elGm~vv~v~~~~~~-----~~~~~~~~~~l~~~~~~~---~~~v~~~~D-- 426 (523)
T 3u7q_B 362 LHGKRFALW-GDPDFV----MGLVKFLLELGCEPVHILCHNGN-----KRWKKAVDAILAASPYGK---NATVYIGKD-- 426 (523)
T ss_dssp HTTCEEEEE-CSHHHH----HHHHHHHHHTTCEEEEEEETTCC-----HHHHHHHHHHHHTSGGGT---TCEEEESCC--
T ss_pred cCCCEEEEE-CCchHH----HHHHHHHHHcCCEEEEEEeCCCC-----HHHHHHHHHHHhhccCCC---CcEEEECCC--
Confidence 456787777 455433 35555666889998877766553 2223334444443 222 122333222
Q ss_pred CCccccCChHHHHHHHHHHHHhcCCCEEEee
Q 025126 115 DGFDKLWNHKSLAKIVEEEVVNCSIDLIITF 145 (257)
Q Consensus 115 dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (257)
...+.+.+++.+||++++.
T Consensus 427 ------------~~~l~~~i~~~~pDLlig~ 445 (523)
T 3u7q_B 427 ------------LWHLRSLVFTDKPDFMIGN 445 (523)
T ss_dssp ------------HHHHHHHHHHTCCSEEEEC
T ss_pred ------------HHHHHHHHHhcCCCEEEEC
Confidence 1345677888899999987
No 115
>3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49}
Probab=35.62 E-value=90 Score=27.96 Aligned_cols=88 Identities=9% Similarity=0.087 Sum_probs=53.3
Q ss_pred HHHHHHHHhCC-----CcEEEEEEeCCCCC-------C---chHHHHHHHHHHHHHcCCCCCcEEEccC--CCCCCCc-c
Q 025126 57 SPTINYLTSRR-----HNLHILCMSNGNAD-------G---MGNIRKDELHRACAVLKIPLEQVKVLDL--VDFQDGF-D 118 (257)
Q Consensus 57 Ggtl~~~~~~G-----~~V~vv~lT~G~~~-------~---~~~~R~~E~~~A~~~LGv~~~~~~~l~~--~d~~dg~-~ 118 (257)
...+.++.++- .=|+-++++.|+.. | .+-.+-.|..+-+..+|+ ..+...+. |+.+|.. .
T Consensus 29 ~~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~I~SMPGv~r~sid~l~~~~~~~~~lGi--~av~LFgv~~p~~KD~~gs 106 (356)
T 3obk_A 29 NRAVRQLVQENLVKPSSLIYPLFVHDEETSVPIPSMPGQSRLSMEDLLKEVGEARSYGI--KAFMLFPKVDDELKSVMAE 106 (356)
T ss_dssp SHHHHHHHCCCCCCGGGEEEEEEEESSSSCEECTTSTTCEEECHHHHHHHHHHHHHTTC--CEEEEEEECCGGGCBSSCG
T ss_pred CHHHHHHHhhcCCCHHHceeeEEEecCCCCcccCCCCCceEECHHHHHHHHHHHHHCCC--CEEEEecCCCcccCCcccc
Confidence 35566676542 23677888888642 1 233344444555677999 45666665 4444422 2
Q ss_pred ccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 025126 119 KLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (257)
Q Consensus 119 ~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (257)
+.|+++-++.+-.+.|++.-||+++..|
T Consensus 107 ~A~~~~g~v~rAir~iK~~~P~l~VitD 134 (356)
T 3obk_A 107 ESYNPDGLLPRAIMALKEAFPDVLLLAD 134 (356)
T ss_dssp GGGCTTSHHHHHHHHHHHHSTTCEEEEE
T ss_pred cccCCCChHHHHHHHHHHHCCCCEEEEe
Confidence 3467777777766777777799877655
No 116
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=35.33 E-value=33 Score=31.05 Aligned_cols=27 Identities=11% Similarity=-0.011 Sum_probs=20.7
Q ss_pred HHHHHHHHHhcCCCEEEeeCCCCCCCCch
Q 025126 127 AKIVEEEVVNCSIDLIITFDNYGVSGHCN 155 (257)
Q Consensus 127 ~~~l~~~i~~~~Pd~V~t~d~~g~d~H~D 155 (257)
.+.+..++++++||+|+.. .|.|.|.+
T Consensus 236 ~~~l~p~l~~F~PdlIvvs--aG~Da~~~ 262 (375)
T 1c3p_A 236 EKSLEIVKEVFEPEVYLLQ--LGTDPLLE 262 (375)
T ss_dssp HHHHHHHHHHCCCSEEEEE--CCSTTBTT
T ss_pred HHHHHHHHHHhCCCEEEEE--CCccccCC
Confidence 3456668899999999988 77776653
No 117
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=35.23 E-value=77 Score=25.47 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=19.0
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEee
Q 025126 122 NHKSLAKIVEEEVVNCSIDLIITF 145 (257)
Q Consensus 122 ~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (257)
+.+.+.+.|.+.+.+.+.|+|+|.
T Consensus 62 d~~~I~~al~~a~~~~~~DlVItt 85 (189)
T 1jlj_A 62 EIEEIKETLIDWCDEKELNLILTT 85 (189)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred CHHHHHHHHHHHhhcCCCCEEEEc
Confidence 346777888888776678999998
No 118
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=35.22 E-value=59 Score=26.87 Aligned_cols=77 Identities=10% Similarity=0.099 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh-cCCCEEEeeCCCCCCCCchHHHHHHH
Q 025126 84 GNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN-CSIDLIITFDNYGVSGHCNHRDVHHG 162 (257)
Q Consensus 84 ~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~-~~Pd~V~t~d~~g~d~H~DH~~~~~a 162 (257)
...|.+-..++++..|++........ ..|+.+...+.+.+++++ -+||.|++.+ |. .+..
T Consensus 149 ~~~R~~Gf~~al~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~ai~~~~--------d~--~A~g 209 (289)
T 2fep_A 149 RSKKLQGYKRALEEANLPFNEQFVAE---------GDYTYDSGLEALQHLMSLDKKPTAILSAT--------DE--MALG 209 (289)
T ss_dssp HTTHHHHHHHHHHHTTCCCCGGGEEE---------CCSCHHHHHHHHHHHTTSSSCCSEEEESS--------HH--HHHH
T ss_pred HHHHHHHHHHHHHHcCCCCChheEee---------CCCCHHHHHHHHHHHHcCCCCCCEEEECC--------HH--HHHH
Confidence 35577778888888886422110110 123445555667777765 3688888862 22 2344
Q ss_pred HHHHHHccCC--CCccEEE
Q 025126 163 ICRSYLNGTS--ERNIEAW 179 (257)
Q Consensus 163 v~~A~~~~~~--~~~~~~y 179 (257)
+.+|+.+.+. +.++.+.
T Consensus 210 ~~~al~~~G~~vP~di~vv 228 (289)
T 2fep_A 210 IIHAAQDQGLSIPEDLDII 228 (289)
T ss_dssp HHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHcCCCCCCCeEEE
Confidence 5666655543 3555554
No 119
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=35.20 E-value=2e+02 Score=24.03 Aligned_cols=92 Identities=10% Similarity=0.104 Sum_probs=52.2
Q ss_pred CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHc-CCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEEe
Q 025126 67 RHNLHILCMSNGNADGMGNIRKDELHRACAVL-KIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLIIT 144 (257)
Q Consensus 67 G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~L-Gv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t 144 (257)
|++ .+.+++..........|.+...++++.. |++ +...-. ..|+.+...+.+.+++++. +||.|++
T Consensus 127 G~~-~I~~i~~~~~~~~~~~R~~Gf~~al~~~pg~~---~~~~~~--------~~~~~~~~~~~~~~ll~~~~~~~aI~~ 194 (325)
T 2x7x_A 127 GKG-NIVELTGLSGSTPAMERHQGFMAAISKFPDIK---LIDKAD--------AAWERGPAEIEMDSMLRRHPKIDAVYA 194 (325)
T ss_dssp TEE-EEEEEESCTTSHHHHHHHHHHHHHHHTCTEEE---EEEEEE--------CTTSHHHHHHHHHHHHHHCSCCCEEEE
T ss_pred CCc-eEEEEECCCCCccHHHHHHHHHHHHHhCCCCE---EEeeec--------CCCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence 654 3444543222224567888889998887 762 211101 1234555566677777764 6899998
Q ss_pred eCCCCCCCCchHHHHHHHHHHHHHccCCCCccEEEE
Q 025126 145 FDNYGVSGHCNHRDVHHGICRSYLNGTSERNIEAWE 180 (257)
Q Consensus 145 ~d~~g~d~H~DH~~~~~av~~A~~~~~~~~~~~~ye 180 (257)
.+ |. .+..+.+|+.+.+.+.++.+.-
T Consensus 195 ~n--------d~--~A~g~~~al~~~Gip~dv~vig 220 (325)
T 2x7x_A 195 HN--------DR--IAPGAYQAAKMAGREKEMIFVG 220 (325)
T ss_dssp SS--------TT--HHHHHHHHHHHTTCTTSSEEEE
T ss_pred CC--------Cc--hHHHHHHHHHHcCCCCCeEEEE
Confidence 73 12 2344556666666566665543
No 120
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=34.87 E-value=2.6e+02 Score=26.02 Aligned_cols=84 Identities=13% Similarity=0.029 Sum_probs=49.2
Q ss_pred CCCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCC
Q 025126 37 GDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDG 116 (257)
Q Consensus 37 ~~~~~vL~i~aHPDDE~l~~Ggtl~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg 116 (257)
..++|+.+.+ -||= .-|...-+.+.|.+|..+..+.++ +.-++++++.++.+.... ...++.-+|
T Consensus 358 l~Gkrv~i~g-d~~~----~~~la~~L~ElGm~vv~v~~~~~~-----~~~~~~~~~ll~~~~~~~-~~~v~~~~d---- 422 (519)
T 1qgu_B 358 LHGKKFGLYG-DPDF----VMGLTRFLLELGCEPTVILSHNAN-----KRWQKAMNKMLDASPYGR-DSEVFINCD---- 422 (519)
T ss_dssp HTTCEEEEES-CHHH----HHHHHHHHHHTTCEEEEEEETTCC-----HHHHHHHHHHHHHSTTCT-TCEEEESCC----
T ss_pred cCCCEEEEEC-CchH----HHHHHHHHHHCCCEEEEEEeCCCC-----HHHHHHHHHHHHhcCCCC-CCEEEECCC----
Confidence 3567888775 3332 235555566899999888877653 223444555555553311 223333222
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCEEEee
Q 025126 117 FDKLWNHKSLAKIVEEEVVNCSIDLIITF 145 (257)
Q Consensus 117 ~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (257)
. ..+.+.+++.+||+++..
T Consensus 423 ------~----~~l~~~i~~~~pDLiig~ 441 (519)
T 1qgu_B 423 ------L----WHFRSLMFTRQPDFMIGN 441 (519)
T ss_dssp ------H----HHHHHHHHHHCCSEEEEC
T ss_pred ------H----HHHHHHHhhcCCCEEEEC
Confidence 1 245677778899999976
No 121
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=34.66 E-value=42 Score=28.29 Aligned_cols=75 Identities=12% Similarity=0.095 Sum_probs=38.7
Q ss_pred HHHHHHhCCCcEEEEEEeCCCC-CCc--hHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHH
Q 025126 59 TINYLTSRRHNLHILCMSNGNA-DGM--GNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVV 135 (257)
Q Consensus 59 tl~~~~~~G~~V~vv~lT~G~~-~~~--~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~ 135 (257)
++..+.++|++|..+..+.+.. ++. -....+-+++.|+.||+| ++..+.+... .++ .+.+.+.++
T Consensus 20 al~~l~~~G~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIp---l~~v~~~g~~--------~~e-~e~l~~~l~ 87 (237)
T 3rjz_A 20 ALYWAIKNRFSVKFLVTMVSENEESYMYHTINANLTDLQARALGIP---LVKGFTQGEK--------EKE-VEDLKRVLS 87 (237)
T ss_dssp HHHHHHHTTCEEEEEEEEECC--------CCSSSHHHHHHHHHTCC---EEEEEC--------------C-HHHHHHHHT
T ss_pred HHHHHHHcCCeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCC---EEEEECCCCc--------hHH-HHHHHHHHH
Confidence 3556678999998776555432 110 001112244578999994 5666665311 111 345556666
Q ss_pred hcCCCEEEee
Q 025126 136 NCSIDLIITF 145 (257)
Q Consensus 136 ~~~Pd~V~t~ 145 (257)
+...+.|++=
T Consensus 88 ~~~i~~vv~G 97 (237)
T 3rjz_A 88 GLKIQGIVAG 97 (237)
T ss_dssp TSCCSEEECC
T ss_pred hcCCcEEEEC
Confidence 6666766654
No 122
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=34.23 E-value=92 Score=27.86 Aligned_cols=49 Identities=8% Similarity=0.045 Sum_probs=34.1
Q ss_pred HHHHHhCCCcEEEEEEeCCCCCC-----chHHHHHHHHHHHHHcCCCCCcEEEccCC
Q 025126 60 INYLTSRRHNLHILCMSNGNADG-----MGNIRKDELHRACAVLKIPLEQVKVLDLV 111 (257)
Q Consensus 60 l~~~~~~G~~V~vv~lT~G~~~~-----~~~~R~~E~~~A~~~LGv~~~~~~~l~~~ 111 (257)
+..+.+.|.+|..+++..|..+. ......+.+++.|+.||+ .++.+++.
T Consensus 26 a~lL~~~G~~V~~v~~~~~~~~~~~~~c~~~~d~~~a~~va~~lGI---p~~vv~~~ 79 (376)
T 2hma_A 26 ALLLKEQGYDVIGIFMKNWDDTDENGVCTATEDYKDVVAVADQIGI---PYYSVNFE 79 (376)
T ss_dssp HHHHHHTTCEEEEEEEECCCCCC----CHHHHHHHHHHHHHHHHTC---CEEEEECH
T ss_pred HHHHHHcCCcEEEEEEECCCcccccccCCCHHHHHHHHHHHHHhCC---cEEEEeCh
Confidence 44556789999999998885431 123445667788999999 45666653
No 123
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
Probab=34.06 E-value=1.3e+02 Score=24.73 Aligned_cols=89 Identities=11% Similarity=-0.045 Sum_probs=46.1
Q ss_pred hcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHH
Q 025126 53 SMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEE 132 (257)
Q Consensus 53 ~l~~Ggtl~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~ 132 (257)
.+++-|-...+.+.|....+++ |+.+...+ |..+-.+..|+ .+ ..+|.-+|.. |.+ ..|..
T Consensus 28 ~i~~DgGa~~l~~~g~~Pd~iv---GDfDSi~~----~~~~~~~~~~~---~i--~~~p~eKD~T----D~e---~Al~~ 88 (222)
T 3lm8_A 28 WIGVDKGTVTLLDAGIIPVEAF---GDFDSITE----QERRRIEKAAP---AL--HVYQAEKDQT----DLD---LALDW 88 (222)
T ss_dssp EEEETHHHHHHHHHTCCCSEEE---SCSTTSCH----HHHHHHHHHCT---TC--EEECCCSSSC----HHH---HHHHH
T ss_pred EEEECHHHHHHHHcCCCCcEEE---eCcccCCH----HHHHHHHhcCC---eE--EEeCCCCCCC----HHH---HHHHH
Confidence 4556666666666676555444 66555432 22233333565 22 2233223321 222 23333
Q ss_pred HHHhcCCCEEEeeCCCCCCCCchHHHHHHHH
Q 025126 133 EVVNCSIDLIITFDNYGVSGHCNHRDVHHGI 163 (257)
Q Consensus 133 ~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av 163 (257)
.++ ..++.|+.. .+..+-.||....-..
T Consensus 89 a~~-~g~~~I~i~--Ga~GgR~DH~lani~l 116 (222)
T 3lm8_A 89 ALE-KQPDIIQIF--GITGGRADHFLGNIQL 116 (222)
T ss_dssp HHH-HCCSEEEEE--SCCCSCHHHHHHHHHH
T ss_pred HHH-cCCCEEEEE--cCCCCchhHHHHHHHH
Confidence 333 377888888 4556899998864433
No 124
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=34.00 E-value=48 Score=28.87 Aligned_cols=82 Identities=21% Similarity=0.236 Sum_probs=44.8
Q ss_pred cEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCcccc
Q 025126 41 NVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKL 120 (257)
Q Consensus 41 ~vL~i~aHPDDE~l~~Ggtl~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~ 120 (257)
|+++++.+ -+.+..|..+.++|++|.. ++|+-+... ++.......+.|+.+|++ ++..+ +.
T Consensus 2 rivf~gt~-----~fa~~~L~~L~~~~~~i~~-Vvt~~d~~~-g~~~~~~v~~~A~~~gIp---v~~~~--~~------- 62 (305)
T 2bln_A 2 KTVVFAYH-----DMGCLGIEALLAAGYEISA-IFTHTDNPG-EKAFYGSVARLAAERGIP---VYAPD--NV------- 62 (305)
T ss_dssp EEEEEECH-----HHHHHHHHHHHHTTCEEEE-EECCCC-------CCCCHHHHHHHHTCC---EECCS--CC-------
T ss_pred EEEEEEcC-----HHHHHHHHHHHHCCCcEEE-EEcCCCCCC-CCcCccHHHHHHHHcCCC---EECCC--cC-------
Confidence 55666543 1356778888888988754 456543211 111111245567778983 33221 11
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEeeC
Q 025126 121 WNHKSLAKIVEEEVVNCSIDLIITFD 146 (257)
Q Consensus 121 ~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (257)
..+ .+.+.+++++||++++..
T Consensus 63 -~~~----~~~~~l~~~~~Dliv~~~ 83 (305)
T 2bln_A 63 -NHP----LWVERIAQLSPDVIFSFY 83 (305)
T ss_dssp -CSH----HHHHHHHHTCCSEEEEES
T ss_pred -CcH----HHHHHHHhcCCCEEEEec
Confidence 112 245667788999998874
No 125
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=33.59 E-value=1.1e+02 Score=24.32 Aligned_cols=96 Identities=11% Similarity=0.089 Sum_probs=54.0
Q ss_pred HHHHHhCCCcEEEEEEeCC-CCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcC
Q 025126 60 INYLTSRRHNLHILCMSNG-NADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCS 138 (257)
Q Consensus 60 l~~~~~~G~~V~vv~lT~G-~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~ 138 (257)
...+.+.|++ .+.+++.. ........|.+-..++++..|++. + .. .. .|+.+...+.+.++++ -+
T Consensus 107 ~~~L~~~G~~-~I~~i~~~~~~~~~~~~R~~gf~~al~~~g~~~-~--~~-~~--------~~~~~~~~~~~~~~l~-~~ 172 (255)
T 1byk_A 107 MQRLYDQGHR-NISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHP-V--AA-LP--------GLAMKQGYENVAKVIT-PE 172 (255)
T ss_dssp HHHHHHTTCC-CEEEECCCTTSTTTTHHHHHHHHHHHHHTTCCC-E--EE-CC--------CSCHHHHHHHSGGGCC-TT
T ss_pred HHHHHHcCCC-eEEEEecCCCCcccHHHHHHHHHHHHHHcCCCc-c--ee-ec--------CCccchHHHHHHHHhc-CC
Confidence 4456678876 34444432 122345788899999999999842 1 11 11 1334444444555554 36
Q ss_pred CCEEEeeCCCCCCCCchHHHHHHHHHHHHHccCCCCccEEEE
Q 025126 139 IDLIITFDNYGVSGHCNHRDVHHGICRSYLNGTSERNIEAWE 180 (257)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~~~~~~~~ye 180 (257)
|+.|++.+ |. .+..+.+|+.+.+. +++.+.-
T Consensus 173 ~~ai~~~~--------d~--~A~g~~~al~~~g~-~di~vig 203 (255)
T 1byk_A 173 TTALLCAT--------DT--LALGASKYLQEQRI-DTLQLAS 203 (255)
T ss_dssp CCEEEESS--------HH--HHHHHHHHHHHTTC-CSCEEEE
T ss_pred CCEEEEeC--------hH--HHHHHHHHHHHcCC-CcEEEEE
Confidence 89988872 33 34445666665554 5555543
No 126
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=33.15 E-value=1.3e+02 Score=26.36 Aligned_cols=63 Identities=11% Similarity=0.078 Sum_probs=41.0
Q ss_pred CCCCCcEEEEecC-----chhhhcchHHHHHHHHhCCCcEEEEEEe-C--CCCCCchHHHHHHHHHHHHHcCC
Q 025126 36 TGDKKNVLLVIAH-----PDDESMFFSPTINYLTSRRHNLHILCMS-N--GNADGMGNIRKDELHRACAVLKI 100 (257)
Q Consensus 36 ~~~~~~vL~i~aH-----PDDE~l~~Ggtl~~~~~~G~~V~vv~lT-~--G~~~~~~~~R~~E~~~A~~~LGv 100 (257)
+.++.+|-+|+|= ++++.+ --.+.++.+.|.+|.+---. . |-..+-.+.|.+|+.+|.+-=.+
T Consensus 9 L~~GD~I~ivaPSs~~~~~~~~~~--~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i 79 (327)
T 4h1h_A 9 LKQGDEIRIIAPSRSIGIMADNQV--EIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSV 79 (327)
T ss_dssp CCTTCEEEEECSSSCGGGSCHHHH--HHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTE
T ss_pred CCCCCEEEEEeCCCCcCccCHHHH--HHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCC
Confidence 5778899999873 345554 33478888899987542111 1 11235678999999998765444
No 127
>3ipr_A PTS system, IIA component; stranded parallel beta-sheet flanked by 3 alpha-helices on EACH SIDE, transferase; 2.50A {Enterococcus faecalis} SCOP: c.54.1.0
Probab=32.73 E-value=1.4e+02 Score=22.83 Aligned_cols=65 Identities=15% Similarity=0.263 Sum_probs=42.6
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHHH-cCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCC--CEEEeeCC
Q 025126 71 HILCMSNGNADGMGNIRKDELHRACAV-LKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSI--DLIITFDN 147 (257)
Q Consensus 71 ~vv~lT~G~~~~~~~~R~~E~~~A~~~-LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~P--d~V~t~d~ 147 (257)
.+|.+|.|. =.+++.++++. +|- .+++..++++... +.+++.+++.+.+++... .+++..|-
T Consensus 3 giii~sHg~-------~A~gl~~~~~~i~G~-~~~i~av~~~~~~-------~~~~~~~~i~~~i~~~~~~~gvlvLtDl 67 (150)
T 3ipr_A 3 GIVIATHGA-------LSDGAKDAATVIMGA-TENIETVNLNSGD-------DVQALGGQIKTAIENVQQGDGVLVMVDL 67 (150)
T ss_dssp EEEEEEETT-------HHHHHHHHHHHHHSC-CCSEEEEEECTTC-------CHHHHHHHHHHHHHHHCSSSCEEEEESS
T ss_pred EEEEEECcH-------HHHHHHHHHHHHcCC-CCCEEEEEecCCC-------CHHHHHHHHHHHHHhcCCCCCEEEEEeC
Confidence 466777772 23456666655 564 3678888875421 456778888888888753 37888887
Q ss_pred CCC
Q 025126 148 YGV 150 (257)
Q Consensus 148 ~g~ 150 (257)
.|+
T Consensus 68 ~GG 70 (150)
T 3ipr_A 68 LSA 70 (150)
T ss_dssp TTS
T ss_pred CCC
Confidence 774
No 128
>3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure initiative, northeast structural GE consortium, NESG, NSR435A, DFA5, electron transport; 1.80A {Nostoc SP} PDB: 4fek_A
Probab=32.43 E-value=25 Score=29.28 Aligned_cols=35 Identities=11% Similarity=0.082 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhcCCC-EEEeeCCCCCCCCchHHHHHHHHHH
Q 025126 125 SLAKIVEEEVVNCSID-LIITFDNYGVSGHCNHRDVHHGICR 165 (257)
Q Consensus 125 ~l~~~l~~~i~~~~Pd-~V~t~d~~g~d~H~DH~~~~~av~~ 165 (257)
++.+.+.+.+...+++ +++|| .|+||........+
T Consensus 66 ~~~~~l~~~~~~~~i~~IilTH------~H~DH~gg~~~l~~ 101 (262)
T 3hnn_A 66 IYLEALQQTVNLKKLDYVILGH------FSPNRIPTFKALLE 101 (262)
T ss_dssp HHHHHHHHHSCGGGEEEEECSS------CCGGGHHHHHHHHH
T ss_pred HHHHHHHHhCChhhCCEEEECC------CCcchhchHHHHHH
Confidence 3444444443333455 45566 69999877665554
No 129
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=32.09 E-value=2.1e+02 Score=23.53 Aligned_cols=86 Identities=9% Similarity=0.103 Sum_probs=48.5
Q ss_pred CCCCcEEEEecCchhhhcchHHHH-HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCC
Q 025126 37 GDKKNVLLVIAHPDDESMFFSPTI-NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQD 115 (257)
Q Consensus 37 ~~~~~vL~i~aHPDDE~l~~Ggtl-~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~d 115 (257)
..++++|+.++= =|.|-.+ .+++++|.+|.++...+ ..+.++..+..+..|. ++.++.. |..
T Consensus 29 l~gk~~lVTGas-----~GIG~aia~~la~~G~~V~~~~~~~-------~~~~~~~~~~l~~~~~---~~~~~~~-Dv~- 91 (271)
T 3v2g_A 29 LAGKTAFVTGGS-----RGIGAAIAKRLALEGAAVALTYVNA-------AERAQAVVSEIEQAGG---RAVAIRA-DNR- 91 (271)
T ss_dssp CTTCEEEEETTT-----SHHHHHHHHHHHHTTCEEEEEESSC-------HHHHHHHHHHHHHTTC---CEEEEEC-CTT-
T ss_pred CCCCEEEEeCCC-----cHHHHHHHHHHHHCCCEEEEEeCCC-------HHHHHHHHHHHHhcCC---cEEEEEC-CCC-
Confidence 456678888764 2444444 45678999876554321 3344555555555665 3444332 221
Q ss_pred CccccCChHHHHHHHHHHHHhc-CCCEEEee
Q 025126 116 GFDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (257)
Q Consensus 116 g~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (257)
+.+.+.+.+.++.+++ ++|+++--
T Consensus 92 ------d~~~v~~~~~~~~~~~g~iD~lvnn 116 (271)
T 3v2g_A 92 ------DAEAIEQAIRETVEALGGLDILVNS 116 (271)
T ss_dssp ------CHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred ------CHHHHHHHHHHHHHHcCCCcEEEEC
Confidence 3455666666666665 68887755
No 130
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=31.95 E-value=73 Score=26.14 Aligned_cols=100 Identities=12% Similarity=0.049 Sum_probs=51.7
Q ss_pred HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcE-EEccCCCCCCCccccCChHHHHHHHHHHHHh-cC
Q 025126 61 NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQV-KVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN-CS 138 (257)
Q Consensus 61 ~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~-~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~-~~ 138 (257)
..+.+.|++ .+.+++..........|.+...++++..|++.... ...+. |+.+...+.+.+++++ -+
T Consensus 118 ~~L~~~G~~-~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~----------~~~~~~~~~~~~~l~~~~~ 186 (291)
T 3egc_A 118 EYLIARGHT-RIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGG----------VRADNGRDGAIKVLTGADR 186 (291)
T ss_dssp HHHHHTTCC-SEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC----------------CCHHHHHHHHTC-CC
T ss_pred HHHHHcCCC-EEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCHHHeEeCC----------CChhHHHHHHHHHHhCCCC
Confidence 345667764 23333322222346778899999999998743211 11111 1222333455666643 46
Q ss_pred CCEEEeeCCCCCCCCchHHHHHHHHHHHHHccCC--CCccEEEEe
Q 025126 139 IDLIITFDNYGVSGHCNHRDVHHGICRSYLNGTS--ERNIEAWEL 181 (257)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~~--~~~~~~ye~ 181 (257)
||.|++.+ |.. +..+.+|+.+.+. +.++.+.-.
T Consensus 187 ~~ai~~~~--------d~~--a~g~~~al~~~g~~vP~di~vvg~ 221 (291)
T 3egc_A 187 PTALLTSS--------HRI--TEGAMQALNVLGLRYGPDVEIVSF 221 (291)
T ss_dssp CSEEEESS--------HHH--HHHHHHHHHHHTCCBTTTBEEEEE
T ss_pred CcEEEECC--------cHH--HHHHHHHHHHcCCCCCCceEEEEe
Confidence 89998873 332 3445565655442 356655543
No 131
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=31.74 E-value=1.5e+02 Score=25.88 Aligned_cols=87 Identities=13% Similarity=0.118 Sum_probs=53.4
Q ss_pred HHHHHhCC--CcEEEEEEeCCCC-CCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh
Q 025126 60 INYLTSRR--HNLHILCMSNGNA-DGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN 136 (257)
Q Consensus 60 l~~~~~~G--~~V~vv~lT~G~~-~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~ 136 (257)
+.++.++| ....+.++--|+. ....-.|.+ .++|+.+|+ +.....+|.. -+.+++.+.|.++=..
T Consensus 24 v~~l~~~~~~~~P~LavilvG~dpaS~~Yv~~k--~k~~~~~Gi---~~~~~~lp~~-------~s~~ell~~I~~lN~D 91 (301)
T 1a4i_A 24 VTQLKEQVPGFTPRLAILQVGNRDDSNLYINVK--LKAAEEIGI---KATHIKLPRT-------TTESEVMKYITSLNED 91 (301)
T ss_dssp HHHHHHHSTTCCCEEEEEEESCCHHHHHHHHHH--HHHHHHHTC---EEEEEEECTT-------CCHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCCCCCEEEEEEeCCChhHHHHHHHH--HHHHHHcCC---EEEEEECCCC-------CCHHHHHHHHHHhcCC
Confidence 44455554 4455555555543 333445544 478999999 4555555541 2457888888888777
Q ss_pred cCCCEEEeeCCCCCCCC--chHHHHH
Q 025126 137 CSIDLIITFDNYGVSGH--CNHRDVH 160 (257)
Q Consensus 137 ~~Pd~V~t~d~~g~d~H--~DH~~~~ 160 (257)
-+.+=|+..-|.. .| .|-..+-
T Consensus 92 ~~V~GIlvqlPLP--~~~~id~~~i~ 115 (301)
T 1a4i_A 92 STVHGFLVQLPLD--SENSINTEEVI 115 (301)
T ss_dssp TTCCEEEECSSCC--CSSCCCHHHHH
T ss_pred CCCcEEEEeccCC--CCCccCHHHHH
Confidence 7777788885443 56 6665543
No 132
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=31.71 E-value=31 Score=28.62 Aligned_cols=37 Identities=19% Similarity=0.327 Sum_probs=27.1
Q ss_pred CCcEEEEecCchhhhcchHHHHHHHH-----hCCCcEEEEEEeC
Q 025126 39 KKNVLLVIAHPDDESMFFSPTINYLT-----SRRHNLHILCMSN 77 (257)
Q Consensus 39 ~~~vL~i~aHPDDE~l~~Ggtl~~~~-----~~G~~V~vv~lT~ 77 (257)
+++||+|.+||.-. +....|++.. ++|++|.++-+.+
T Consensus 1 ~mkiLiI~gspr~~--S~t~~l~~~~~~~l~~~g~ev~~~dL~~ 42 (228)
T 3tem_A 1 GKKVLIVYAHQEPK--SFNGSLKNVAVDELSRQGCTVTVSDLYA 42 (228)
T ss_dssp CCEEEEEECCSCTT--SHHHHHHHHHHHHHHHHTCEEEEEETTT
T ss_pred CCEEEEEEeCCCCC--CHHHHHHHHHHHHHHHCCCEEEEEEhhh
Confidence 36899999999976 3455555443 4589999988865
No 133
>2hl0_A Threonyl-tRNA synthetase; translation, editing, aminoacyl-tRNA synthetase, enzyme mechanism, enantioselectivity, ligase; HET: A3S; 1.86A {Pyrococcus abyssi} PDB: 2hkz_A 1y2q_A* 2hl2_A* 3pd2_A* 2hl1_A* 3pd3_A* 3pd4_A* 3pd5_A*
Probab=31.19 E-value=65 Score=25.17 Aligned_cols=63 Identities=13% Similarity=0.127 Sum_probs=40.7
Q ss_pred chHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeCCCC
Q 025126 83 MGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYG 149 (257)
Q Consensus 83 ~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g 149 (257)
..+.-.+|....++.+|+ +++....|.-+.+.....--..++.+.+++.++....++.-+| .|
T Consensus 56 vv~~av~eI~~~a~kv~~--~~ivlYPyAHLSs~La~P~~A~~iL~~le~~L~~~g~eV~raP--FG 118 (143)
T 2hl0_A 56 VSLKAIEEISKVAEQVKA--ENVFVYPFAHLSSELAKPSVAMDILNRVYQGLKERGFNVGKAP--FG 118 (143)
T ss_dssp HHHHHHHHHHHHHHHHTC--CEEEEEECGGGCSSBCCHHHHHHHHHHHHHHHHHTTCEEEECC--SS
T ss_pred HHHHHHHHHHHHHHhcCC--CEEEEeccccccCccCChHHHHHHHHHHHHHHHhCCCeEEEeC--Cc
Confidence 345566889999999999 7787777654432221100123566677777777667888877 66
No 134
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=31.08 E-value=2.7e+02 Score=24.30 Aligned_cols=41 Identities=10% Similarity=-0.002 Sum_probs=20.7
Q ss_pred HHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCC
Q 025126 57 SPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKI 100 (257)
Q Consensus 57 Ggtl~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv 100 (257)
-..+....+.|.+|...+.+. ......|-.|..+++.-+|+
T Consensus 123 ~~~i~~ak~~G~~v~~~~~~a---~~~~~e~~~~ia~~~~~~Ga 163 (345)
T 1nvm_A 123 KQHIEYARNLGMDTVGFLMMS---HMIPAEKLAEQGKLMESYGA 163 (345)
T ss_dssp HHHHHHHHHHTCEEEEEEEST---TSSCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCEEEEEEEeC---CCCCHHHHHHHHHHHHHCCC
Confidence 344444445555544443222 12234566666666666676
No 135
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=30.26 E-value=2.2e+02 Score=23.03 Aligned_cols=91 Identities=9% Similarity=0.043 Sum_probs=51.1
Q ss_pred CCc-EEEEEEeCCCCCCchHHHHHHHHHHHHHc-CCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEE
Q 025126 67 RHN-LHILCMSNGNADGMGNIRKDELHRACAVL-KIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLII 143 (257)
Q Consensus 67 G~~-V~vv~lT~G~~~~~~~~R~~E~~~A~~~L-Gv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~Pd~V~ 143 (257)
|++ +.+++++..........|.+...++++.. |+ .+...-. ..|+.+...+.+.+++++. +|+.|+
T Consensus 128 G~r~i~i~~l~g~~~~~~~~~R~~gf~~~l~~~~g~---~~~~~~~--------~~~~~~~~~~~~~~ll~~~~~~~ai~ 196 (290)
T 2fn9_A 128 DAKEIPYAELLGILSAQPTWDRSNGFHSVVDQYPEF---KMVAQQS--------AEFDRDTAYKVTEQILQAHPEIKAIW 196 (290)
T ss_dssp SCSCEEEEEEECCTTCHHHHHHHHHHHHHHTTSTTE---EEEEEEE--------CTTCHHHHHHHHHHHHHHCTTCCEEE
T ss_pred cccceeEEEEEcCCCCchHHHHHHHHHHHHHhCCCC---EEEEecc--------CCCCHHHHHHHHHHHHHhCCCCcEEE
Confidence 655 33455543222234567888899999887 66 2211101 1234555566777777764 689998
Q ss_pred eeCCCCCCCCchHHHHHHHHHHHHHccCCCCccEEE
Q 025126 144 TFDNYGVSGHCNHRDVHHGICRSYLNGTSERNIEAW 179 (257)
Q Consensus 144 t~d~~g~d~H~DH~~~~~av~~A~~~~~~~~~~~~y 179 (257)
+.+ |.. +..+.+|+.+.+. .++.+.
T Consensus 197 ~~~--------d~~--a~g~~~al~~~g~-~dv~vi 221 (290)
T 2fn9_A 197 CGN--------DAM--ALGAMKACEAAGR-TDIYIF 221 (290)
T ss_dssp ESS--------HHH--HHHHHHHHHHTTC-TTCEEE
T ss_pred ECC--------chH--HHHHHHHHHHCCC-CCeEEE
Confidence 872 333 3455666665554 455444
No 136
>3bed_A PTS system, IIA component; mannose/sorbose, phosphotransferase system, structural genom APC28805, PSI-2, protein structure initiative; HET: MSE MLY; 1.45A {Enterococcus faecalis} SCOP: c.54.1.1
Probab=30.19 E-value=1e+02 Score=23.36 Aligned_cols=66 Identities=11% Similarity=0.136 Sum_probs=44.8
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHHHc-CCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCC-CEEEeeCC
Q 025126 70 LHILCMSNGNADGMGNIRKDELHRACAVL-KIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSI-DLIITFDN 147 (257)
Q Consensus 70 V~vv~lT~G~~~~~~~~R~~E~~~A~~~L-Gv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~P-d~V~t~d~ 147 (257)
+.+|.+|.|. -.+++.++++.+ |- .+++..++++... +.+++.+++.+.+++... .+++..|-
T Consensus 6 i~iiivsHG~-------~A~gl~~~~~~i~G~-~~~i~ai~~~~~~-------~~~~~~~~i~~~i~~~~~~gvliLtDl 70 (142)
T 3bed_A 6 PKLILMSHGR-------MAEETLASTQMIVGE-LADAAIVSMTAED-------GLSGTQAKLAAILKEAGNVPTLVLADL 70 (142)
T ss_dssp SEEEEEEETT-------HHHHHHHHHHHHHCT-TCCCEEEEECTTT-------HHHHHHHHHHHHHHHHCSCCEEEEESS
T ss_pred ccEEEEcChH-------HHHHHHHHHHHHcCC-CCCEEEEEecCCC-------CHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 5677888873 336777777765 74 3678888875411 345677888888887653 47888887
Q ss_pred CCC
Q 025126 148 YGV 150 (257)
Q Consensus 148 ~g~ 150 (257)
.|+
T Consensus 71 ~GG 73 (142)
T 3bed_A 71 XGG 73 (142)
T ss_dssp TTS
T ss_pred CCC
Confidence 673
No 137
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=30.18 E-value=2e+02 Score=22.48 Aligned_cols=73 Identities=11% Similarity=0.118 Sum_probs=40.9
Q ss_pred EEEEEEeCCCCCCc-hHHHHHHHHHHHHHcCCCCCcEEEcc-CCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeCC
Q 025126 70 LHILCMSNGNADGM-GNIRKDELHRACAVLKIPLEQVKVLD-LVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDN 147 (257)
Q Consensus 70 V~vv~lT~G~~~~~-~~~R~~E~~~A~~~LGv~~~~~~~l~-~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~ 147 (257)
..+-++|.|+.-+. .+.-..-+.+.++.+|+ ++.... .|| +.+.+.+.|.+.+.+.+.|+|+|.
T Consensus 11 ~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~---~v~~~~iv~D---------d~~~i~~~l~~a~~~~~~DlVitt-- 76 (172)
T 1mkz_A 11 TRIAILTVSNRRGEEDDTSGHYLRDSAQEAGH---HVVDKAIVKE---------NRYAIRAQVSAWIASDDVQVVLIT-- 76 (172)
T ss_dssp CEEEEEEECSSCCGGGCHHHHHHHHHHHHTTC---EEEEEEEECS---------CHHHHHHHHHHHHHSSSCCEEEEE--
T ss_pred CEEEEEEEeCCCCcccCccHHHHHHHHHHCCC---eEeEEEEeCC---------CHHHHHHHHHHHHhcCCCCEEEeC--
Confidence 34445556654221 22222335566677898 333222 233 346778888888776568999998
Q ss_pred CCCC-CCchH
Q 025126 148 YGVS-GHCNH 156 (257)
Q Consensus 148 ~g~d-~H~DH 156 (257)
.|.+ ++-|+
T Consensus 77 GG~g~~~~D~ 86 (172)
T 1mkz_A 77 GGTGLTEGDQ 86 (172)
T ss_dssp SCCSSSTTCC
T ss_pred CCCCCCCCCC
Confidence 4432 44454
No 138
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=30.06 E-value=82 Score=25.71 Aligned_cols=100 Identities=11% Similarity=0.083 Sum_probs=52.2
Q ss_pred HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcC--
Q 025126 61 NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCS-- 138 (257)
Q Consensus 61 ~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~-- 138 (257)
..+.+.|++- +.+++. ........|.+...++++..|++.....+..... .+..+...+.+.+++++..
T Consensus 130 ~~L~~~G~~~-i~~i~~-~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~ 200 (298)
T 3tb6_A 130 EHLLSLGHTH-MMGIFK-ADDTQGVKRMNGFIQAHRERELFPSPDMIVTFTT-------EEKESKLLEKVKATLEKNSKH 200 (298)
T ss_dssp HHHHHTTCCS-EEEEEE-SSSHHHHHHHHHHHHHHHHTTCCCCGGGEEEECH-------HHHTTHHHHHHHHHHHHTTTS
T ss_pred HHHHHCCCCc-EEEEcC-CCCccHHHHHHHHHHHHHHcCCCCCcceEEEecc-------cchhhhHHHHHHHHHhcCCCC
Confidence 3455677652 222222 1123456788889999999887532211111110 0011223556777777653
Q ss_pred -CCEEEeeCCCCCCCCchHHHHHHHHHHHHHccCC--CCccEEE
Q 025126 139 -IDLIITFDNYGVSGHCNHRDVHHGICRSYLNGTS--ERNIEAW 179 (257)
Q Consensus 139 -Pd~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~~--~~~~~~y 179 (257)
||.|++.+ |. .+..+.+|+.+.+. ++++.+.
T Consensus 201 ~~~ai~~~~--------d~--~a~g~~~al~~~g~~vP~di~vv 234 (298)
T 3tb6_A 201 MPTAILCYN--------DE--IALKVIDMLREMDLKVPEDMSIV 234 (298)
T ss_dssp CCSEEECSS--------HH--HHHHHHHHHHHTTCCTTTTCEEE
T ss_pred CCeEEEEeC--------cH--HHHHHHHHHHHcCCCCCCceEEE
Confidence 89998772 33 33445666655543 3555554
No 139
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=29.94 E-value=2.3e+02 Score=23.20 Aligned_cols=46 Identities=20% Similarity=0.288 Sum_probs=28.0
Q ss_pred HHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 025126 91 LHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (257)
Q Consensus 91 ~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (257)
..+.|+.+|+| +..++..++. +.++--+.+.+.+++.+||+|++..
T Consensus 44 v~~~A~~~gIp---~~~~~~~~~~-------~r~~~d~~~~~~l~~~~~Dliv~ag 89 (211)
T 3p9x_A 44 VVERVKVHEIP---VCALDPKTYP-------SKEAYEIEVVQQLKEKQIDFVVLAG 89 (211)
T ss_dssp HHHHHHTTTCC---EEECCGGGSS-------SHHHHHHHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHcCCC---EEEeChhhcC-------chhhhHHHHHHHHHhcCCCEEEEeC
Confidence 34566778983 4444432221 2233345677888899999988874
No 140
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=29.90 E-value=1.5e+02 Score=24.30 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=25.1
Q ss_pred HHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 025126 93 RACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (257)
Q Consensus 93 ~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (257)
+.|+..|+| +...+..++. . +.+.+.+++++||+|+...
T Consensus 52 ~~A~~~gIp---~~~~~~~~~~--------~----~~~~~~L~~~~~Dlivlag 90 (215)
T 3kcq_A 52 LIAQSYGIP---TFVVKRKPLD--------I----EHISTVLREHDVDLVCLAG 90 (215)
T ss_dssp HHHHHTTCC---EEECCBTTBC--------H----HHHHHHHHHTTCSEEEESS
T ss_pred HHHHHcCCC---EEEeCcccCC--------h----HHHHHHHHHhCCCEEEEeC
Confidence 456778993 4444432221 1 4567788889999999874
No 141
>1sfs_A Hypothetical protein; structural genomics, unknown function, possible bacterial lysozyme, PSI, protein structure initiative; 1.07A {Geobacillus stearothermophilus} SCOP: c.1.8.8
Probab=29.24 E-value=1.5e+02 Score=25.13 Aligned_cols=56 Identities=16% Similarity=0.162 Sum_probs=37.9
Q ss_pred HHHHHHHhCCCcEEEEEEeCCCCCC--chHHHHHHHHHHHHHcCCCCCcEEEccCCCC
Q 025126 58 PTINYLTSRRHNLHILCMSNGNADG--MGNIRKDELHRACAVLKIPLEQVKVLDLVDF 113 (257)
Q Consensus 58 gtl~~~~~~G~~V~vv~lT~G~~~~--~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~ 113 (257)
+=+..+.+.|.++..|+...++..+ .|..--+...++++.||+|..-++|.+..|+
T Consensus 73 ~Ev~~i~a~Gl~i~PIYq~~~~~~g~~qG~~dA~~Av~~A~~lG~p~gtiyFAviED~ 130 (240)
T 1sfs_A 73 DEIVRIRNYGVKVLPIYNAFREAVGYANGQVAARNAVFHARRLGIPKNKLLFANIEDF 130 (240)
T ss_dssp HHHHHHHHTTCEEEEEECCCSCBCCHHHHHHHHHHHHHHHHHTTCCSSCEEEEECCTT
T ss_pred HHHHHHHHCCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcccC
Confidence 3456666777777777765554333 3444455667778899999888889887664
No 142
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=29.18 E-value=17 Score=33.23 Aligned_cols=36 Identities=11% Similarity=0.101 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhcCCC-EEEeeCCCCCCCCchHHHHHHHHHH
Q 025126 124 KSLAKIVEEEVVNCSID-LIITFDNYGVSGHCNHRDVHHGICR 165 (257)
Q Consensus 124 ~~l~~~l~~~i~~~~Pd-~V~t~d~~g~d~H~DH~~~~~av~~ 165 (257)
+++.+.|.+++...++| +|+|| .|+||........+
T Consensus 75 ~~~l~~l~~~i~~~~IdyIi~TH------~h~DH~G~l~~l~~ 111 (410)
T 4dik_A 75 KEFIDALSKIVDPKEITHIIVNH------TEPDASGSLPATLK 111 (410)
T ss_dssp HHHHHHHTTTSCGGGCCEEECSC------CCHHHHTTHHHHHH
T ss_pred HHHHHHHHHhcCcccCCEEEeCc------CCcchhhhHHHHHH
Confidence 45666666665555677 45666 69999876554444
No 143
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=28.84 E-value=2.4e+02 Score=23.10 Aligned_cols=44 Identities=11% Similarity=0.292 Sum_probs=28.0
Q ss_pred HHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 025126 93 RACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (257)
Q Consensus 93 ~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (257)
+.|+..|++ +..++..++. +.++.-+.+.+.+++++||+|++..
T Consensus 48 ~~A~~~gIp---~~~~~~~~~~-------~r~~~d~~~~~~l~~~~~Dliv~ag 91 (215)
T 3tqr_A 48 KRAQQADIP---THIIPHEEFP-------SRTDFESTLQKTIDHYDPKLIVLAG 91 (215)
T ss_dssp HHHHHTTCC---EEECCGGGSS-------SHHHHHHHHHHHHHTTCCSEEEESS
T ss_pred HHHHHcCCC---EEEeCccccC-------chhHhHHHHHHHHHhcCCCEEEEcc
Confidence 456678993 4555433221 2233345678889999999999874
No 144
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=28.70 E-value=2.1e+02 Score=23.07 Aligned_cols=74 Identities=9% Similarity=0.140 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEEeeCCCCCCCCchHHHHHHH
Q 025126 84 GNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLIITFDNYGVSGHCNHRDVHHG 162 (257)
Q Consensus 84 ~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~d~~g~d~H~DH~~~~~a 162 (257)
...|.+-..++++..|++ +..... ..|+.+...+.+.+++++. +|+.|++.+ |. .+..
T Consensus 138 ~~~R~~Gf~~al~~~g~~---~~~~~~--------~~~~~~~~~~~~~~ll~~~~~~~ai~~~n--------D~--~A~g 196 (271)
T 2dri_A 138 ARERGEGFQQAVAAHKFN---VLASQP--------ADFDRIKGLNVMQNLLTAHPDVQAVFAQN--------DE--MALG 196 (271)
T ss_dssp HHHHHHHHHHHHHHHTCE---EEEEEE--------CTTCHHHHHHHHHHHHHHCTTCCEEEESS--------HH--HHHH
T ss_pred HhHHHHHHHHHHhcCCCE---EEEecC--------CCCCHHHHHHHHHHHHHhCCCccEEEECC--------Cc--HHHH
Confidence 467888899999888872 211100 1245555566677777654 588998873 33 3455
Q ss_pred HHHHHHccCCCCccEEE
Q 025126 163 ICRSYLNGTSERNIEAW 179 (257)
Q Consensus 163 v~~A~~~~~~~~~~~~y 179 (257)
+.+|+.+.+. .++.+.
T Consensus 197 ~~~al~~~g~-~dv~vv 212 (271)
T 2dri_A 197 ALRALQTAGK-SDVMVV 212 (271)
T ss_dssp HHHHHHHHTC-CSCEEE
T ss_pred HHHHHHHcCC-CCcEEE
Confidence 6666665554 455443
No 145
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=28.32 E-value=93 Score=27.93 Aligned_cols=60 Identities=8% Similarity=0.073 Sum_probs=37.0
Q ss_pred CCCCCcEEEEecCc-----hhhhcchHHHHHHHHhCCCcEEEEEEeCCC---CCCchHHHHHHHHHHHHH
Q 025126 36 TGDKKNVLLVIAHP-----DDESMFFSPTINYLTSRRHNLHILCMSNGN---ADGMGNIRKDELHRACAV 97 (257)
Q Consensus 36 ~~~~~~vL~i~aHP-----DDE~l~~Ggtl~~~~~~G~~V~vv~lT~G~---~~~~~~~R~~E~~~A~~~ 97 (257)
+.++.+|-+|+|=- +.+.+ --.+.++.+.|.+|.+--.+... ..+-.+.|.+|+.+|.+-
T Consensus 40 Lk~GD~I~ivaPSs~~~~~~~~~~--~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~D 107 (371)
T 3tla_A 40 LAVGDTIGFFSSSAPATVTAKNRF--FRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYN 107 (371)
T ss_dssp CCTTCEEEEECSSCCHHHHTHHHH--HHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTC
T ss_pred CCCcCEEEEEeCCCCccccCHHHH--HHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhC
Confidence 56778888888641 22332 34466777889887543222111 135678899999888764
No 146
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=28.22 E-value=2.5e+02 Score=23.47 Aligned_cols=84 Identities=8% Similarity=-0.012 Sum_probs=48.3
Q ss_pred CCCcEEEEecCchhhhcchHHH-HHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCC
Q 025126 38 DKKNVLLVIAHPDDESMFFSPT-INYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDG 116 (257)
Q Consensus 38 ~~~~vL~i~aHPDDE~l~~Ggt-l~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg 116 (257)
++|.+|+-++-- |.|-. -.+++++|.+|.+. +- .+.+.+|..+.++..|. ++..+.. |.
T Consensus 8 ~gKvalVTGas~-----GIG~aia~~la~~Ga~Vvi~---~~-----~~~~~~~~~~~l~~~g~---~~~~~~~-Dv--- 67 (255)
T 4g81_D 8 TGKTALVTGSAR-----GLGFAYAEGLAAAGARVILN---DI-----RATLLAESVDTLTRKGY---DAHGVAF-DV--- 67 (255)
T ss_dssp TTCEEEETTCSS-----HHHHHHHHHHHHTTCEEEEC---CS-----CHHHHHHHHHHHHHTTC---CEEECCC-CT---
T ss_pred CCCEEEEeCCCc-----HHHHHHHHHHHHCCCEEEEE---EC-----CHHHHHHHHHHHHhcCC---cEEEEEe-eC---
Confidence 455666665542 34444 44567899986543 21 13455555555666675 4444332 22
Q ss_pred ccccCChHHHHHHHHHHHHhc-CCCEEEee
Q 025126 117 FDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (257)
Q Consensus 117 ~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (257)
-+.+++.+.+.++.+++ ++|+++--
T Consensus 68 ----~~~~~v~~~~~~~~~~~G~iDiLVNN 93 (255)
T 4g81_D 68 ----TDELAIEAAFSKLDAEGIHVDILINN 93 (255)
T ss_dssp ----TCHHHHHHHHHHHHHTTCCCCEEEEC
T ss_pred ----CCHHHHHHHHHHHHHHCCCCcEEEEC
Confidence 14567777777777776 68887754
No 147
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=27.98 E-value=34 Score=30.86 Aligned_cols=25 Identities=20% Similarity=0.119 Sum_probs=19.7
Q ss_pred HHHHHHHhcCCCEEEeeCCCCCCCCch
Q 025126 129 IVEEEVVNCSIDLIITFDNYGVSGHCN 155 (257)
Q Consensus 129 ~l~~~i~~~~Pd~V~t~d~~g~d~H~D 155 (257)
.+...+++++||+|+.. -|.|.|.+
T Consensus 248 ~v~p~l~~f~PdlIvvs--aG~Da~~~ 272 (369)
T 1zz1_A 248 VVLPALRAYRPQLIIVG--SGFDASML 272 (369)
T ss_dssp THHHHHHHHCCSEEEEE--ECCTTBTT
T ss_pred HHHHHHHHcCCCEEEEe--CCccCCCC
Confidence 46778899999999987 67666643
No 148
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=27.83 E-value=48 Score=30.17 Aligned_cols=28 Identities=7% Similarity=0.090 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCCCEEEeeCCCCCCCCch
Q 025126 126 LAKIVEEEVVNCSIDLIITFDNYGVSGHCN 155 (257)
Q Consensus 126 l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~D 155 (257)
+.+.|..++++++||+|+.. .|.|.|.+
T Consensus 244 ~~~~l~p~~~~F~PdlIvvs--aG~Da~~~ 271 (388)
T 3ew8_A 244 CESVLKEVYQAFNPKAVVLQ--LGADTIAG 271 (388)
T ss_dssp HHHHHHHHHHHHCCSEEEEE--CCSTTBTT
T ss_pred HHHHHHHHHHHhCCCEEEEE--CCccCCCC
Confidence 33456678899999999988 67776654
No 149
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=27.81 E-value=2.5e+02 Score=22.99 Aligned_cols=99 Identities=7% Similarity=0.061 Sum_probs=53.4
Q ss_pred chHHHHHHHHhC--CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHH
Q 025126 55 FFSPTINYLTSR--RHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEE 132 (257)
Q Consensus 55 ~~Ggtl~~~~~~--G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~ 132 (257)
+....+..+.+. |++= +.++++.. ...+..|.+..+++++..|++ +......+ .++..+.+.+
T Consensus 118 ~~~~~~~~l~~~~pg~~~-I~~i~~~~-~~~~~~r~~g~~~al~~~gi~---~~~~~~~~----------~~~~~~~~~~ 182 (295)
T 3lft_A 118 PAQQQVELIKALTPNVKT-IGALYSSS-EDNSKTQVEEFKAYAEKAGLT---VETFAVPS----------TNEIASTVTV 182 (295)
T ss_dssp CHHHHHHHHHHHCTTCCE-EEEEEETT-CHHHHHHHHHHHHHHHHTTCE---EEEEEESS----------GGGHHHHHHH
T ss_pred cHHHHHHHHHHhCCCCcE-EEEEeCCC-CcchHHHHHHHHHHHHHcCCE---EEEEecCC----------HHHHHHHHHH
Confidence 445566666666 8653 33333322 122567899999999999983 22111111 1233344455
Q ss_pred HHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHHHHHccCCCCccEEEE
Q 025126 133 EVVNCSIDLIITFDNYGVSGHCNHRDVHHGICRSYLNGTSERNIEAWE 180 (257)
Q Consensus 133 ~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~~~~~~~~ye 180 (257)
+.. +||.|++.. |..+.+ +..|+...+.+.++.++-
T Consensus 183 l~~--~~dai~~~~--------D~~a~g--~~~~l~~~~~~~~i~vig 218 (295)
T 3lft_A 183 MTS--KVDAIWVPI--------DNTIAS--GFPTVVSSNQSSKKPIYP 218 (295)
T ss_dssp HTT--TCSEEEECS--------CHHHHH--THHHHHHHTTTTCCCEEE
T ss_pred HHh--cCCEEEECC--------chhHHH--HHHHHHHHHHHcCCCEEe
Confidence 442 799999862 455443 333343333455565554
No 150
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=27.55 E-value=2.1e+02 Score=22.21 Aligned_cols=52 Identities=12% Similarity=0.123 Sum_probs=32.3
Q ss_pred HHHHHHHcCCCCCcEEEcc-CCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeCCCCCC-CCchH
Q 025126 91 LHRACAVLKIPLEQVKVLD-LVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVS-GHCNH 156 (257)
Q Consensus 91 ~~~A~~~LGv~~~~~~~l~-~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d-~H~DH 156 (257)
+.+.++.+|+ ++.... -|| +.+.+.+.+.......+.|+|+|. .|.+ ++-|+
T Consensus 45 L~~~L~~~G~---~v~~~~iV~D---------d~~~i~~al~~~~a~~~~DlVitt--GG~g~~~~D~ 98 (178)
T 3iwt_A 45 IKQLLIENGH---KIIGYSLVPD---------DKIKILKAFTDALSIDEVDVIIST--GGTGYSPTDI 98 (178)
T ss_dssp HHHHHHHTTC---EEEEEEEECS---------CHHHHHHHHHHHHTCTTCCEEEEE--SCCSSSTTCC
T ss_pred HHHHHHHCCC---EEEEEEEeCC---------CHHHHHHHHHHHHhcCCCCEEEec--CCcccCCCCc
Confidence 4566777898 333332 233 345677777777777789999998 4432 44444
No 151
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=27.47 E-value=70 Score=23.97 Aligned_cols=64 Identities=11% Similarity=0.052 Sum_probs=37.0
Q ss_pred CCCCcEEEEecCc--hhhhcchHHHHHHH-HhCCCcEEEEEEeCCCCCCchH----H------HHHHHHHHHHHcCC
Q 025126 37 GDKKNVLLVIAHP--DDESMFFSPTINYL-TSRRHNLHILCMSNGNADGMGN----I------RKDELHRACAVLKI 100 (257)
Q Consensus 37 ~~~~~vL~i~aHP--DDE~l~~Ggtl~~~-~~~G~~V~vv~lT~G~~~~~~~----~------R~~E~~~A~~~LGv 100 (257)
...+++++|..++ |-+....+-.++.. .+.|++|.+....+|-.--... + --.|+.+.+...|+
T Consensus 13 ~~~~kl~ii~~sgP~~~~~~~~al~lA~~A~a~g~eV~vFf~~dGV~~l~k~~~~~i~~~~~~~~~~ll~~~~~~Gv 89 (134)
T 3mc3_A 13 EQXXXILIVVTHGPEDLDRTYAPLFMASISASMEYETSVFFMIXGPXLLDXXWQEEERXXGGNPFIHFFDMAXENGV 89 (134)
T ss_dssp -CCCEEEEEECCCGGGTHHHHHHHHHHHHHHHTTCEEEEEECTTGGGGGBHHHHHHHHHHCCCHHHHHHHHHHHTTC
T ss_pred cccceEEEEEccCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEeCcHHHHhhcchhhcccCCCCCHHHHHHHHHHcCC
Confidence 3456788887776 55666666666653 4679999755444442210010 1 13466777777777
No 152
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=27.10 E-value=1.7e+02 Score=25.26 Aligned_cols=86 Identities=16% Similarity=0.274 Sum_probs=50.5
Q ss_pred HHHHHhC-CCcEEEEEEeCCCCC-CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc
Q 025126 60 INYLTSR-RHNLHILCMSNGNAD-GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC 137 (257)
Q Consensus 60 l~~~~~~-G~~V~vv~lT~G~~~-~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~ 137 (257)
++++.++ |....+.++--|+.. .....|.+ .++|+.+|+ +.....+|.. -+.+++.+.|.++-..-
T Consensus 24 v~~l~~~~~~~P~Lavilvg~dpaS~~Yv~~k--~k~~~~~Gi---~~~~~~lp~~-------~s~~ell~~I~~lN~d~ 91 (285)
T 3l07_A 24 VQEYKHHTAITPKLVAIIVGNDPASKTYVASK--EKACAQVGI---DSQVITLPEH-------TTESELLELIDQLNNDS 91 (285)
T ss_dssp HHHHHHHHCCCCEEEEEEESCCHHHHHHHHHH--HHHHHHHTC---EEEEEEECTT-------CCHHHHHHHHHHHHTCT
T ss_pred HHHHHhcCCCCceEEEEEECCCHHHHHHHHHH--HHHHHHcCC---eEEEEECCCC-------CCHHHHHHHHHHHhCCC
Confidence 3344443 445555555555432 23334443 589999999 5566666541 14567777777776666
Q ss_pred CCCEEEeeCCCCCCCCchHHHH
Q 025126 138 SIDLIITFDNYGVSGHCNHRDV 159 (257)
Q Consensus 138 ~Pd~V~t~d~~g~d~H~DH~~~ 159 (257)
+.+=|+.+-|.. .|.|-..+
T Consensus 92 ~v~GIlvqlPlp--~~id~~~v 111 (285)
T 3l07_A 92 SVHAILVQLPLP--AHINKNNV 111 (285)
T ss_dssp TCCEEEECSSCC--TTSCHHHH
T ss_pred CCcEEEEcCCCC--CCcCHHHH
Confidence 667677774433 56665543
No 153
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=26.79 E-value=3.4e+02 Score=24.46 Aligned_cols=84 Identities=12% Similarity=0.166 Sum_probs=43.7
Q ss_pred CCCCcEEEEecCchh--hhcchHHHHHH--HHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCC
Q 025126 37 GDKKNVLLVIAHPDD--ESMFFSPTINY--LTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVD 112 (257)
Q Consensus 37 ~~~~~vL~i~aHPDD--E~l~~Ggtl~~--~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d 112 (257)
....||++++..... ....+-+.+.. +.+.|.+|++++.+....+ ... .++. ..+ .+.+.+.
T Consensus 203 ~~~~rI~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~---~~~-~~~~----~~~------~~~~~~~ 268 (568)
T 2vsy_A 203 KGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGS---TLR-TRLA----QAS------TLHDVTA 268 (568)
T ss_dssp SSCEEEEEEESCSSSSHHHHHHHHHHHHHHHHCTTEEEEEEESSCCCSC---HHH-HHHH----HTS------EEEECTT
T ss_pred CCCeEEEEECcccccChHHHHHHHHHhhccCCcccEEEEEEECCCCCcc---HHH-HHHH----hcC------eEEECCC
Confidence 455689999865432 22223344455 4556877777664321111 111 1221 222 1222211
Q ss_pred CCCCccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 025126 113 FQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (257)
Q Consensus 113 ~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (257)
+. ...+.+.|++.+||+|+.++
T Consensus 269 --------~~----~~~l~~~i~~~~~Div~~~~ 290 (568)
T 2vsy_A 269 --------LG----HLATAKHIRHHGIDLLFDLR 290 (568)
T ss_dssp --------CC----HHHHHHHHHHTTCSEEEECS
T ss_pred --------CC----HHHHHHHHHhCCCCEEEECC
Confidence 11 24577889999999998774
No 154
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=26.69 E-value=1.4e+02 Score=26.76 Aligned_cols=62 Identities=15% Similarity=0.191 Sum_probs=39.3
Q ss_pred EEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCc-----hHHHHHHHHHHHHHcCCCCCcEEEccCC
Q 025126 42 VLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGM-----GNIRKDELHRACAVLKIPLEQVKVLDLV 111 (257)
Q Consensus 42 vL~i~aHPDDE~l~~Ggtl~~~~~~G~~V~vv~lT~G~~~~~-----~~~R~~E~~~A~~~LGv~~~~~~~l~~~ 111 (257)
++.++-=-|--+ ++..+.++|.+|..+++..+..++. ...-.+.+++.|+.||+ .++.+++.
T Consensus 21 vVa~SGGvDSsv-----~a~lL~~~G~~V~~v~~~~~~~~~~~~~~~s~~d~~~a~~va~~LGI---p~~vvd~~ 87 (380)
T 2der_A 21 IVGMSGGVDSSV-----SAWLLQQQGYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGI---ELHTVNFA 87 (380)
T ss_dssp EEECCSCSTTHH-----HHHHHHTTCCEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHTC---CEEEEECH
T ss_pred EEEEEChHHHHH-----HHHHHHHcCCeEEEEEEEcCccccccCCCCCHHHHHHHHHHHHHcCC---cEEEEeCc
Confidence 334555555433 3455667899999999987754321 22334557788999999 45666653
No 155
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=26.64 E-value=38 Score=30.67 Aligned_cols=28 Identities=11% Similarity=0.070 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCCCEEEeeCCCCCCCCch
Q 025126 126 LAKIVEEEVVNCSIDLIITFDNYGVSGHCN 155 (257)
Q Consensus 126 l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~D 155 (257)
+.+.+..++++++||+|+.. .|.|.|.+
T Consensus 236 ~~~~l~p~~~~f~Pd~Ivvs--aG~Da~~~ 263 (376)
T 4a69_A 236 FQPVINQVVDFYQPTCIVLQ--CGADSLGC 263 (376)
T ss_dssp HHHHHHHHHHHHCCSEEEEE--CCGGGBTT
T ss_pred HHHHHHHHHHHhCCCEEEEe--CcccCCCC
Confidence 34556678899999999987 66665544
No 156
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}
Probab=26.60 E-value=2.8e+02 Score=23.08 Aligned_cols=86 Identities=7% Similarity=0.060 Sum_probs=46.8
Q ss_pred CCCcEEEEecCchhhhcchHHHHH-HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCC
Q 025126 38 DKKNVLLVIAHPDDESMFFSPTIN-YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDG 116 (257)
Q Consensus 38 ~~~~vL~i~aHPDDE~l~~Ggtl~-~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg 116 (257)
.++++|+.++- =|.|-.++ +++++|.+|.++.... .+.+.++..+..+..|. ++.++.. |..
T Consensus 48 ~~k~vlVTGas-----~GIG~aia~~la~~G~~V~~~~~~~------~~~~~~~~~~~~~~~~~---~~~~~~~-Dv~-- 110 (294)
T 3r3s_A 48 KDRKALVTGGD-----SGIGRAAAIAYAREGADVAINYLPA------EEEDAQQVKALIEECGR---KAVLLPG-DLS-- 110 (294)
T ss_dssp TTCEEEEETTT-----SHHHHHHHHHHHHTTCEEEEECCGG------GHHHHHHHHHHHHHTTC---CEEECCC-CTT--
T ss_pred CCCEEEEeCCC-----cHHHHHHHHHHHHCCCEEEEEeCCc------chhHHHHHHHHHHHcCC---cEEEEEe-cCC--
Confidence 45678888774 24454444 4678999876543321 12334444455555665 4444432 221
Q ss_pred ccccCChHHHHHHHHHHHHhc-CCCEEEee
Q 025126 117 FDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (257)
Q Consensus 117 ~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (257)
+.+.+.+.+.++.+++ ++|+++--
T Consensus 111 -----d~~~v~~~~~~~~~~~g~iD~lv~n 135 (294)
T 3r3s_A 111 -----DESFARSLVHKAREALGGLDILALV 135 (294)
T ss_dssp -----SHHHHHHHHHHHHHHHTCCCEEEEC
T ss_pred -----CHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 3445555555555554 68887755
No 157
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=26.48 E-value=1.3e+02 Score=24.07 Aligned_cols=64 Identities=8% Similarity=0.079 Sum_probs=36.8
Q ss_pred CcEEEEEEeCCCC---CCchHHHHHHHHHHHHHcCCCCCcEEEcc-CCCCCCCccccCChHHHHHHHHHHHHhcCCCEEE
Q 025126 68 HNLHILCMSNGNA---DGMGNIRKDELHRACAVLKIPLEQVKVLD-LVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLII 143 (257)
Q Consensus 68 ~~V~vv~lT~G~~---~~~~~~R~~E~~~A~~~LGv~~~~~~~l~-~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~ 143 (257)
.+..+.++|.|+. +. .+.-..-+.+.++.+|. ++.... .|| +.+.+.+.|.+.+. .+.|+|+
T Consensus 29 ~~~rvaIistGdEl~~G~-~Dsn~~~L~~~L~~~G~---~v~~~~iv~D---------d~~~I~~al~~a~~-~~~DlVI 94 (185)
T 3rfq_A 29 VVGRALVVVVDDRTAHGD-EDHSGPLVTELLTEAGF---VVDGVVAVEA---------DEVDIRNALNTAVI-GGVDLVV 94 (185)
T ss_dssp CCEEEEEEEECHHHHTTC-CCSHHHHHHHHHHHTTE---EEEEEEEECS---------CHHHHHHHHHHHHH-TTCSEEE
T ss_pred CCCEEEEEEECcccCCCC-cCcHHHHHHHHHHHCCC---EEEEEEEeCC---------CHHHHHHHHHHHHh-CCCCEEE
Confidence 3456666666652 22 22233345566777887 333322 233 34667777777663 3689999
Q ss_pred ee
Q 025126 144 TF 145 (257)
Q Consensus 144 t~ 145 (257)
|.
T Consensus 95 tt 96 (185)
T 3rfq_A 95 SV 96 (185)
T ss_dssp EE
T ss_pred EC
Confidence 98
No 158
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=26.45 E-value=1.4e+02 Score=25.84 Aligned_cols=86 Identities=12% Similarity=0.140 Sum_probs=51.9
Q ss_pred HHHHHhCC-CcEEEEEEeCCCCC-CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc
Q 025126 60 INYLTSRR-HNLHILCMSNGNAD-GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC 137 (257)
Q Consensus 60 l~~~~~~G-~~V~vv~lT~G~~~-~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~ 137 (257)
+..+.++| .+..+.++--|+.. ...-.|.+ .++|+.+|+. .....+|. .-+.+++.+.|.++=+.-
T Consensus 23 v~~l~~~~~~~P~LavilvG~dpaS~~Yv~~k--~k~~~~~Gi~---~~~~~lp~-------~~s~~ell~~I~~lN~D~ 90 (288)
T 1b0a_A 23 VQARIAAGLRAPGLAVVLVGSNPASQIYVASK--RKACEEVGFV---SRSYDLPE-------TTSEAELLELIDTLNADN 90 (288)
T ss_dssp HHHHHHTTCCCCEEEEEEESCCHHHHHHHHHH--HHHHHHHTCE---ECCEEECT-------TCCHHHHHHHHHHHHTCT
T ss_pred HHHHHhcCCCCceEEEEEeCCChhHHHHHHHH--HHHHHHcCCE---EEEEECCC-------CCCHHHHHHHHHHhcCCC
Confidence 45566666 44555555556532 33444543 5899999993 33444443 124567777777777766
Q ss_pred CCCEEEeeCCCCCCCCchHHHH
Q 025126 138 SIDLIITFDNYGVSGHCNHRDV 159 (257)
Q Consensus 138 ~Pd~V~t~d~~g~d~H~DH~~~ 159 (257)
+.+=|+..-|. -.|.|-..+
T Consensus 91 ~V~GIlvqlPL--P~~id~~~i 110 (288)
T 1b0a_A 91 TIDGILVQLPL--PAGIDNVKV 110 (288)
T ss_dssp TCCEEEECSSC--CTTSCHHHH
T ss_pred CCcEEEEeCCC--CCCCCHHHH
Confidence 67778888443 367766554
No 159
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=26.05 E-value=1.3e+02 Score=27.67 Aligned_cols=79 Identities=14% Similarity=0.121 Sum_probs=48.6
Q ss_pred HHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCC-C---------CCC-c-cc-cC-----
Q 025126 60 INYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVD-F---------QDG-F-DK-LW----- 121 (257)
Q Consensus 60 l~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d-~---------~dg-~-~~-~~----- 121 (257)
+..+.++|.+|..+++-.|.... .+++++.|+.||+ ...+++|..+ + +.+ . .. ..
T Consensus 31 a~~Lke~G~eViavt~d~Gq~~E-----le~A~~vA~~lGi--~~~~VvDl~eef~~~v~~p~i~~na~yeg~Y~~g~~l 103 (421)
T 1vl2_A 31 LKWLCEKGFDVIAYVANVGQKDD-----FVAIKEKALKTGA--SKVYVEDLRREFVTDYIFTALLGNAMYEGRYLLGTAI 103 (421)
T ss_dssp HHHHHHTTCEEEEEEEESSCCCC-----HHHHHHHHHHHTC--SEEEEEECHHHHHHHTHHHHHTTTCCBTTTBCCHHHH
T ss_pred HHHHHHCCCeEEEEEEEcCCHHH-----HHHHHHHHHHcCC--ceEEEEecHHHHHHhhhhHHHhcCCcccCceeCCCcc
Confidence 44556789999999998886321 3456778999999 3456666532 1 100 0 00 11
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEee
Q 025126 122 NHKSLAKIVEEEVVNCSIDLIITF 145 (257)
Q Consensus 122 ~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (257)
....+...+.++-++...|.|.+-
T Consensus 104 ~Rp~i~~~l~~~A~~~Gad~IA~G 127 (421)
T 1vl2_A 104 ARPLIAKRQVEIAEKEGAQYVAHG 127 (421)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEECC
T ss_pred cHHHHHHHHHHHHHHcCCCEEEEC
Confidence 122344567777788899998764
No 160
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=25.86 E-value=28 Score=28.32 Aligned_cols=18 Identities=17% Similarity=-0.132 Sum_probs=12.9
Q ss_pred EEEeeCCCCCCCCchHHHHHHHHH
Q 025126 141 LIITFDNYGVSGHCNHRDVHHGIC 164 (257)
Q Consensus 141 ~V~t~d~~g~d~H~DH~~~~~av~ 164 (257)
+++|| .|+||........
T Consensus 72 vi~TH------~H~DH~gg~~~l~ 89 (246)
T 2fhx_A 72 AINTH------FHLDGTGGNEIYK 89 (246)
T ss_dssp EECCS------SSHHHHTTHHHHH
T ss_pred EEeCC------CCccccChHHHHh
Confidence 56677 7999998765443
No 161
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=25.63 E-value=2.8e+02 Score=23.93 Aligned_cols=86 Identities=10% Similarity=0.093 Sum_probs=50.7
Q ss_pred HHHHHhCC-CcEEEEEEeCCCCC-CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc
Q 025126 60 INYLTSRR-HNLHILCMSNGNAD-GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC 137 (257)
Q Consensus 60 l~~~~~~G-~~V~vv~lT~G~~~-~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~ 137 (257)
++++.++| ....+.++--|+.. .....|.+ .++|+.+|+ +.....+|.. -+.+++.+.|.++-..-
T Consensus 25 v~~l~~~~~~~P~Lavilvg~dpaS~~Yv~~k--~k~~~~~Gi---~~~~~~lp~~-------~s~~ell~~I~~lN~d~ 92 (286)
T 4a5o_A 25 VTERRQQGLRVPGLAVILVGTDPASQVYVAHK--RKDCEEVGF---LSQAYDLPAE-------TSQDDLLALIDRLNDDP 92 (286)
T ss_dssp HHHHHHTTCCCCEEEEEEESCCHHHHHHHHHH--HHHHHHTTC---EEEEEEECTT-------CCHHHHHHHHHHHHTCT
T ss_pred HHHHHhcCCCCceEEEEEeCCCHHHHHHHHHH--HHHHHHcCC---eEEEEECCCC-------CCHHHHHHHHHHHhCCC
Confidence 44455555 43555555555432 23334443 589999999 5556666541 14567777777776666
Q ss_pred CCCEEEeeCCCCCCCCchHHHH
Q 025126 138 SIDLIITFDNYGVSGHCNHRDV 159 (257)
Q Consensus 138 ~Pd~V~t~d~~g~d~H~DH~~~ 159 (257)
+.+=|+.+-|.. .|.|-..+
T Consensus 93 ~v~GIlVqlPLP--~~id~~~v 112 (286)
T 4a5o_A 93 AIDGILVQLPLP--AHLDASLL 112 (286)
T ss_dssp TCCEEEECSSCC--TTSCHHHH
T ss_pred CCCEEEEcCCCC--CCcCHHHH
Confidence 677777774433 56665443
No 162
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Probab=25.48 E-value=98 Score=29.45 Aligned_cols=72 Identities=22% Similarity=0.241 Sum_probs=39.6
Q ss_pred hHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHH
Q 025126 56 FSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVV 135 (257)
Q Consensus 56 ~Ggtl~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~ 135 (257)
.+..|..+.++|++|.. ++|+-+... ++.......+.|+..|++ ++..+ +. ..+ .+.+.++
T Consensus 12 ~~~~l~~l~~~~~~i~~-v~t~~~~~~-~~~~~~~~~~~a~~~~ip---~~~~~--~~--------~~~----~~~~~l~ 72 (660)
T 1z7e_A 12 GCLGIEALLAAGYEISA-IFTHTDNPG-EKAFYGSVARLAAERGIP---VYAPD--NV--------NHP----LWVERIA 72 (660)
T ss_dssp HHHHHHHHHHTTCEEEE-EECCCC---------CCHHHHHHHHTCC---EECCS--CT--------TSH----HHHHHHH
T ss_pred HHHHHHHHHhCCCCEEE-EEeCCCCCc-cCcCccHHHHHHHHcCCC---EeccC--CC--------CcH----HHHHHHH
Confidence 46678888888988754 456543211 122223355667788984 32221 11 112 2455677
Q ss_pred hcCCCEEEeeC
Q 025126 136 NCSIDLIITFD 146 (257)
Q Consensus 136 ~~~Pd~V~t~d 146 (257)
+++||+|++..
T Consensus 73 ~~~~d~iv~~~ 83 (660)
T 1z7e_A 73 QLSPDVIFSFY 83 (660)
T ss_dssp HHCCSEEEEES
T ss_pred hcCCCEEEEcC
Confidence 78999988874
No 163
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=25.44 E-value=2.7e+02 Score=22.50 Aligned_cols=96 Identities=9% Similarity=0.140 Sum_probs=51.9
Q ss_pred HHHhC-CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHc-CCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-C
Q 025126 62 YLTSR-RHNLHILCMSNGNADGMGNIRKDELHRACAVL-KIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-S 138 (257)
Q Consensus 62 ~~~~~-G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~L-Gv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~ 138 (257)
.+.+. |..-.+.+++..........|.+-.+++++.. |+ .+..... ..|+.+...+.+.+++++. +
T Consensus 115 ~L~~~~gg~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~~~---~~~~~~~--------~~~~~~~~~~~~~~ll~~~~~ 183 (283)
T 2ioy_A 115 FIAKALKGKGNVVELEGIPGASAARDRGKGFDEAIAKYPDI---KIVAKQA--------ADFDRSKGLSVMENILQAQPK 183 (283)
T ss_dssp HHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHTTCTTE---EEEEEEE--------CTTCHHHHHHHHHHHHHHCSC
T ss_pred HHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCC---EEEeecc--------CCCCHHHHHHHHHHHHHhCCC
Confidence 34455 52234555543222223467888888888776 65 1211100 1234555556667777654 5
Q ss_pred CCEEEeeCCCCCCCCchHHHHHHHHHHHHHccCCCCccEEE
Q 025126 139 IDLIITFDNYGVSGHCNHRDVHHGICRSYLNGTSERNIEAW 179 (257)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~~~~~~~~y 179 (257)
|+.|++.+ | ..+..+.+|+.+.+. .++.+.
T Consensus 184 ~~ai~~~n--------D--~~A~g~~~al~~~G~-~di~vi 213 (283)
T 2ioy_A 184 IDAVFAQN--------D--EMALGAIKAIEAANR-QGIIVV 213 (283)
T ss_dssp CCEEEESS--------H--HHHHHHHHHHHHTTC-CCCEEE
T ss_pred ccEEEECC--------c--hHHHHHHHHHHHCCC-CCcEEE
Confidence 88898873 2 234556676766554 455443
No 164
>3iuu_A MLRC-like, putative metallopeptidase; YP_676511.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 2.13A {Mesorhizobium SP}
Probab=25.37 E-value=4.2e+02 Score=24.72 Aligned_cols=105 Identities=13% Similarity=0.049 Sum_probs=63.1
Q ss_pred hHHHHHHHHhCCCcEEEEEEeCCCCCCc-----hHHHHHHHHHHHHHcCCCCCcEEEccCCCCC--CCccccCChHHHHH
Q 025126 56 FSPTINYLTSRRHNLHILCMSNGNADGM-----GNIRKDELHRACAVLKIPLEQVKVLDLVDFQ--DGFDKLWNHKSLAK 128 (257)
Q Consensus 56 ~Ggtl~~~~~~G~~V~vv~lT~G~~~~~-----~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~--dg~~~~~~~~~l~~ 128 (257)
.||.+....+.|+++.-.......++|. -+.=+.|+....+...+ +-.+|+.-..- +|.+. .+-++.+
T Consensus 48 ~~g~~~~a~~~g~elvp~l~A~A~P~G~V~~~aye~l~~eil~l~~a~p~---Dgv~L~LHGAmv~eg~~D--~EGdlL~ 122 (495)
T 3iuu_A 48 LSGIVKTAEALGYRCVPSISARARPGGAIEQKVFDNIVDEFVQAARMQDF---DAICLDLHGATLAEHTLD--TEGYLLS 122 (495)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEECSEECBCHHHHHHHHHHHHHHHHHSCC---SEEEEEECSCCCBSSCSS--HHHHHHH
T ss_pred hHHHHHHHHHCCcEEeeeEEEeecCCccccHHHHHHHHHHHHHHHhcCCC---CEEEEeccCcEeecCCCC--chHHHHH
Confidence 6788888888999988777766666543 23334555544445555 45666653221 11110 1124444
Q ss_pred HHHHHHHhcCCCE--EEeeCCCC-----------------CCCCchHHHHHHHHHHHHH
Q 025126 129 IVEEEVVNCSIDL--IITFDNYG-----------------VSGHCNHRDVHHGICRSYL 168 (257)
Q Consensus 129 ~l~~~i~~~~Pd~--V~t~d~~g-----------------~d~H~DH~~~~~av~~A~~ 168 (257)
+|.+++ .||+ +.+.|+|+ .+.|.|-..+++-+.+-+.
T Consensus 123 rvR~~v---Gp~vpI~~slDlH~Nvt~~mv~~aD~l~~yrtyPH~D~~etg~raa~lL~ 178 (495)
T 3iuu_A 123 RLREVV---GNDIMISLALDLHAYLTPQMVEQATIITSFRTTPHADIEETGVRAMTLLD 178 (495)
T ss_dssp HHHHHH---TTTSEEEEEECTTCCCCHHHHHHCSEEEECCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHh---CCCCeEEEEeCCCCCccHHHHhhCCEEEEcCCCCccCHHHHHHHHHHHHH
Confidence 444443 6774 66778775 4789999998887776443
No 165
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=25.29 E-value=1.9e+02 Score=23.81 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=28.9
Q ss_pred HHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 025126 92 HRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (257)
Q Consensus 92 ~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (257)
.+.|+..|+| ++..+..++. +.++.-+.+.+.+++++||+|++..
T Consensus 53 ~~~A~~~gIp---~~~~~~~~~~-------~r~~~d~~~~~~l~~~~~Dlivlag 97 (215)
T 3da8_A 53 AEIAAEASVP---VFTVRLADHP-------SRDAWDVAITAATAAHEPDLVVSAG 97 (215)
T ss_dssp HHHHHHTTCC---EEECCGGGSS-------SHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred HHHHHHcCCC---EEEeCccccc-------chhhhhHHHHHHHHhhCCCEEEEcC
Confidence 4557778994 4444432211 2334445678889999999998874
No 166
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=25.24 E-value=2.2e+02 Score=25.73 Aligned_cols=58 Identities=22% Similarity=0.229 Sum_probs=34.7
Q ss_pred HHHHHHHHcCCCCCcEEEcc-CCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeCCCCCC-CCchHHHHHHHHHH
Q 025126 90 ELHRACAVLKIPLEQVKVLD-LVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVS-GHCNHRDVHHGICR 165 (257)
Q Consensus 90 E~~~A~~~LGv~~~~~~~l~-~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d-~H~DH~~~~~av~~ 165 (257)
-+.+.++.+|+ ++...+ .+| +.+.+.+.|.+.+. +.|+|+|. .|.+ ++-|+ +.+++.+
T Consensus 208 ~L~~~l~~~G~---~v~~~~iv~D---------d~~~i~~al~~a~~--~~Dlvitt--GG~s~g~~D~--t~~al~~ 267 (411)
T 1g8l_A 208 AVHLMLEQLGC---EVINLGIIRD---------DPHALRAAFIEADS--QADVVISS--GGVSVGEADY--TKTILEE 267 (411)
T ss_dssp HHHHHHHHTTC---EEEEEEEECS---------CHHHHHHHHHHHHH--HCSEEEEC--SSSCSSSCSH--HHHHHHH
T ss_pred HHHHHHHHCCC---EEEEEEEeCC---------CHHHHHHHHHHHhh--cCCEEEEC--CCCCCCCccc--HHHHHHh
Confidence 35666777898 333333 233 34677777877776 47999998 4432 45555 3444444
No 167
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus}
Probab=25.23 E-value=68 Score=27.02 Aligned_cols=33 Identities=12% Similarity=0.168 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcC-----CC-EEEeeCCCCCCCCchHHHHHHHHH
Q 025126 126 LAKIVEEEVVNCS-----ID-LIITFDNYGVSGHCNHRDVHHGIC 164 (257)
Q Consensus 126 l~~~l~~~i~~~~-----Pd-~V~t~d~~g~d~H~DH~~~~~av~ 164 (257)
..+.+.+.+++.. ++ +|+|| .|+||........
T Consensus 45 ~~~~l~~~l~~~g~~~~~i~~Vi~TH------~H~DH~gg~~~l~ 83 (317)
T 2zo4_A 45 ARGALELHLAELGLCFQDVKTILLTH------HHPDHYGLSGFFE 83 (317)
T ss_dssp HHHHHHHHHHHTTCCGGGCCEEEESC------CSHHHHTTHHHHH
T ss_pred HHHHHHHHHHHcCCChhhcCEEEEcC------CCCcccccHHHHH
Confidence 3445566666542 44 57777 6999997765544
No 168
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=25.17 E-value=34 Score=31.34 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcCCCEEEeeCCCCCCCCc
Q 025126 127 AKIVEEEVVNCSIDLIITFDNYGVSGHC 154 (257)
Q Consensus 127 ~~~l~~~i~~~~Pd~V~t~d~~g~d~H~ 154 (257)
.+.+..++++++||+|+.- -|.|.|.
T Consensus 268 ~~~v~p~~~~f~Pdlivvs--aG~Da~~ 293 (413)
T 2vqm_A 268 RTVVMPIASEFAPDVVLVS--SGFDAVE 293 (413)
T ss_dssp HHTHHHHHHHHCCSEEEEE--ECCTTBS
T ss_pred HHHHHHHHHhcCCCEEEEe--CChhhcC
Confidence 3446677899999999988 7888765
No 169
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=25.13 E-value=2e+02 Score=25.07 Aligned_cols=86 Identities=16% Similarity=0.092 Sum_probs=51.7
Q ss_pred HHHHHhC-C-CcEEEEEEeCCCC-CCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh
Q 025126 60 INYLTSR-R-HNLHILCMSNGNA-DGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN 136 (257)
Q Consensus 60 l~~~~~~-G-~~V~vv~lT~G~~-~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~ 136 (257)
++++.++ | ....+.++--|+. ....-.|.+ .++|+.+|+ +.....+|.. -+.+++.+.|.++-..
T Consensus 26 v~~l~~~~~~~~P~Lavilvg~dpaS~~Yv~~k--~k~~~~~Gi---~~~~~~lp~~-------~s~~ell~~I~~lN~d 93 (300)
T 4a26_A 26 VAALRELYGGRVPGLASIIVGQRMDSKKYVQLK--HKAAAEVGM---ASFNVELPED-------ISQEVLEVNVEKLNND 93 (300)
T ss_dssp HHHHHHHTTTCCCEEEEEEESCCHHHHHHHHHH--HHHHHHTTC---EEEEEEECTT-------CCHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCCCceEEEEEeCCCHHHHHHHHHH--HHHHHHcCC---eEEEEECCCC-------CCHHHHHHHHHHhcCC
Confidence 3344443 5 5566666666653 233344544 589999999 5566666541 1456777777777666
Q ss_pred cCCCEEEeeCCCCCCCCchHHHH
Q 025126 137 CSIDLIITFDNYGVSGHCNHRDV 159 (257)
Q Consensus 137 ~~Pd~V~t~d~~g~d~H~DH~~~ 159 (257)
-+.+=|+.+-|.. .|.|-..+
T Consensus 94 ~~v~GIlVqlPLP--~~id~~~v 114 (300)
T 4a26_A 94 PNCHGIIVQLPLP--KHLNENRA 114 (300)
T ss_dssp TTCCEEEECSCCC--TTSCHHHH
T ss_pred CCCCEEEEcCCCC--CCCCHHHH
Confidence 6677777774433 56665543
No 170
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=24.91 E-value=2.7e+02 Score=22.36 Aligned_cols=98 Identities=11% Similarity=0.020 Sum_probs=53.5
Q ss_pred HHHHhC-C-CcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-
Q 025126 61 NYLTSR-R-HNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC- 137 (257)
Q Consensus 61 ~~~~~~-G-~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~- 137 (257)
..+.+. | ++ .+.+++..........|.+-..++++..|.. +.-.-. ..|+.+...+.+.+++++.
T Consensus 122 ~~L~~~~G~~~-~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~---~~~~~~--------~~~~~~~~~~~~~~~l~~~~ 189 (289)
T 3brs_A 122 AVTKNLVRKSG-KIGVISFVKNSKTAMDREEGLKIGLSDDSNK---IEAIYY--------CDSNYDKAYDGTVELLTKYP 189 (289)
T ss_dssp HHHHHHTSSSC-EEEEEESCTTSHHHHHHHHHHHHHHGGGGGG---EEEEEE--------CTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcCCCc-eEEEEECCCCCccHHHHHHHHHHHHHhCCCc---EEeeec--------CCCCHHHHHHHHHHHHHhCC
Confidence 344454 6 54 3444443222234567888889999888862 211101 1234455566677777764
Q ss_pred CCCEEEeeCCCCCCCCchHHHHHHHHHHHHHccCCCCccEEEE
Q 025126 138 SIDLIITFDNYGVSGHCNHRDVHHGICRSYLNGTSERNIEAWE 180 (257)
Q Consensus 138 ~Pd~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~~~~~~~~ye 180 (257)
+|+.|++.+ |..+ ..+.+|+.+.+...++.+.-
T Consensus 190 ~~~ai~~~~--------d~~a--~g~~~al~~~G~~~di~vvg 222 (289)
T 3brs_A 190 DISVMVGLN--------QYSA--TGAARAIKDMSLEAKVKLVC 222 (289)
T ss_dssp TEEEEEESS--------HHHH--HHHHHHHHHTTCTTTSEEEE
T ss_pred CceEEEECC--------Ccch--HHHHHHHHhcCCCCCEEEEE
Confidence 578888762 3333 34556666555444555543
No 171
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=24.78 E-value=3e+02 Score=22.82 Aligned_cols=93 Identities=10% Similarity=0.007 Sum_probs=53.2
Q ss_pred CCCcEEEEEEeCCCCC-CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEE
Q 025126 66 RRHNLHILCMSNGNAD-GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLII 143 (257)
Q Consensus 66 ~G~~V~vv~lT~G~~~-~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~Pd~V~ 143 (257)
.|++ .+++++ |..+ .....|.+...++++..+. .+...... ...|+.+...+.+.+++++. +|+.|+
T Consensus 126 ~g~~-~i~~i~-g~~~~~~~~~r~~g~~~~l~~~~~---~~~~~~~~------~~~~~~~~~~~~~~~ll~~~~~~~aI~ 194 (316)
T 1tjy_A 126 KEKA-KVAFFY-SSPTVTDQNQWVKEAKAKISQEHP---GWEIVTTQ------FGYNDATKSLQTAEGIIKAYPDLDAII 194 (316)
T ss_dssp SSSE-EEEEEE-SCSSCHHHHHHHHHHHHHHHHHCT---TEEEEEEE------ECTTCHHHHHHHHHHHHHHCSSCCEEE
T ss_pred CCCC-EEEEEE-cCCCChhHHHHHHHHHHHHHhhCC---CcEEEEec------cCCCCHHHHHHHHHHHHHhCCCCCEEE
Confidence 4665 455554 3332 2356788888888865432 22222210 11356677777888888875 588898
Q ss_pred eeCCCCCCCCchHHHHHHHHHHHHHccCCCCccEEEE
Q 025126 144 TFDNYGVSGHCNHRDVHHGICRSYLNGTSERNIEAWE 180 (257)
Q Consensus 144 t~d~~g~d~H~DH~~~~~av~~A~~~~~~~~~~~~ye 180 (257)
+.+ |. .+..+.+|+.+.+ ..++.+.-
T Consensus 195 ~~n--------D~--~A~g~~~al~~~G-~~dv~VvG 220 (316)
T 1tjy_A 195 APD--------AN--ALPAAAQAAENLK-RNNLAIVG 220 (316)
T ss_dssp ECS--------TT--HHHHHHHHHHHTT-CCSCEEEE
T ss_pred ECC--------Cc--cHHHHHHHHHHcC-CCCEEEEE
Confidence 873 22 3345666676665 45555543
No 172
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=24.64 E-value=2.9e+02 Score=22.55 Aligned_cols=86 Identities=10% Similarity=0.122 Sum_probs=46.8
Q ss_pred CCCCcEEEEecCchhhhcchHHHH-HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCC
Q 025126 37 GDKKNVLLVIAHPDDESMFFSPTI-NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQD 115 (257)
Q Consensus 37 ~~~~~vL~i~aHPDDE~l~~Ggtl-~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~d 115 (257)
..++++|+.++= =|.|-.+ .+++++|.+|.++...+ ..+.++..+.++..|. ++.++.. |..
T Consensus 16 l~~k~~lVTGas-----~gIG~aia~~l~~~G~~V~~~~~~~-------~~~~~~~~~~~~~~~~---~~~~~~~-Dv~- 78 (270)
T 3is3_A 16 LDGKVALVTGSG-----RGIGAAVAVHLGRLGAKVVVNYANS-------TKDAEKVVSEIKALGS---DAIAIKA-DIR- 78 (270)
T ss_dssp CTTCEEEESCTT-----SHHHHHHHHHHHHTTCEEEEEESSC-------HHHHHHHHHHHHHTTC---CEEEEEC-CTT-
T ss_pred cCCCEEEEECCC-----chHHHHHHHHHHHCCCEEEEEcCCC-------HHHHHHHHHHHHhcCC---cEEEEEc-CCC-
Confidence 455677777664 2444444 45678999876544321 2334445555555665 4444332 221
Q ss_pred CccccCChHHHHHHHHHHHHhc-CCCEEEee
Q 025126 116 GFDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (257)
Q Consensus 116 g~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (257)
+.+.+.+.+.++.+++ ++|+++--
T Consensus 79 ------~~~~v~~~~~~~~~~~g~id~lvnn 103 (270)
T 3is3_A 79 ------QVPEIVKLFDQAVAHFGHLDIAVSN 103 (270)
T ss_dssp ------SHHHHHHHHHHHHHHHSCCCEEECC
T ss_pred ------CHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 3455555566666555 68887754
No 173
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=24.63 E-value=1.1e+02 Score=26.47 Aligned_cols=81 Identities=10% Similarity=0.101 Sum_probs=48.4
Q ss_pred ccCCCCCc-EEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHc-------CCCCCcE
Q 025126 34 LTTGDKKN-VLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVL-------KIPLEQV 105 (257)
Q Consensus 34 ~~~~~~~~-vL~i~aHPDDE~l~~Ggtl~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~L-------Gv~~~~~ 105 (257)
.|.+.+++ ++.++- .|-.+ +...+.++|.+|..+++-.| +...+..++.|+.| |+ .+
T Consensus 174 lP~g~~~kvlvllSG-vDS~v-----aa~ll~~~G~~v~~v~~~~~------~~~~~~a~~~a~~l~~~~~~~~i---~~ 238 (307)
T 1vbk_A 174 LPIGTEGRMIGILHD-ELSAL-----AIFLMMKRGVEVIPVYIGKD------DKNLEKVRSLWNLLKRYSYGSKG---FL 238 (307)
T ss_dssp BCTTTTCEEEEECSS-HHHHH-----HHHHHHHBTCEEEEEEESCS------SHHHHHHHHHHHHHHTTCTTSCC---CC
T ss_pred CCcCCCCcEEEEEeC-CcHHH-----HHHHHHhCCCeEEEEEEEEC------HHHHHHHHHHHHHHhhhccCCCC---cE
Confidence 46666666 555677 77654 23345678999999998733 22334456677777 33 23
Q ss_pred EEcc-CCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 025126 106 KVLD-LVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (257)
Q Consensus 106 ~~l~-~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (257)
++.+ + .+.. ++.++.+.|.|+|-.
T Consensus 239 ~vv~~~-------------~~~~----~~A~~~ga~~I~tG~ 263 (307)
T 1vbk_A 239 VVAESF-------------DRVL----KLIRDFGVKGVIKGL 263 (307)
T ss_dssp EEESSH-------------HHHH----HHHHHHTCCEEECCC
T ss_pred EEeCCC-------------HHHH----HHHHHcCCCEEEECc
Confidence 3333 2 1111 555667899998863
No 174
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=24.61 E-value=91 Score=26.81 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=23.7
Q ss_pred CCCCcEEEEecCchh-hhcchHHHHHHHHhCCCcEEEEE
Q 025126 37 GDKKNVLLVIAHPDD-ESMFFSPTINYLTSRRHNLHILC 74 (257)
Q Consensus 37 ~~~~~vL~i~aHPDD-E~l~~Ggtl~~~~~~G~~V~vv~ 74 (257)
.+.+|||++. .|-- -..-+=+....|+++|++|++++
T Consensus 20 ~~~MRIL~~~-~p~~GHv~P~l~LA~~L~~rGh~Vt~~t 57 (400)
T 4amg_A 20 FQSMRALFIT-SPGLSHILPTVPLAQALRALGHEVRYAT 57 (400)
T ss_dssp -CCCEEEEEC-CSSHHHHGGGHHHHHHHHHTTCEEEEEE
T ss_pred CCCCeEEEEC-CCchhHHHHHHHHHHHHHHCCCEEEEEe
Confidence 4557999764 4421 23345566677889999998764
No 175
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=24.58 E-value=63 Score=27.35 Aligned_cols=41 Identities=10% Similarity=0.127 Sum_probs=26.1
Q ss_pred HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCC
Q 025126 61 NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPL 102 (257)
Q Consensus 61 ~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~ 102 (257)
..+.+.|++ .+.+++..........|.+-..++++..|++.
T Consensus 165 ~~L~~~G~~-~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~ 205 (330)
T 3ctp_A 165 DHLYEKGCR-KILHIKGPEVFEATELRYKGFLDGARAKDLEI 205 (330)
T ss_dssp HHHHHTTCC-SEEEEECCTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHCCCC-eEEEEeCCccCccHHHHHHHHHHHHHHcCCCc
Confidence 445677875 33444432222345678889999999999843
No 176
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=24.51 E-value=1.3e+02 Score=26.46 Aligned_cols=63 Identities=10% Similarity=0.070 Sum_probs=39.5
Q ss_pred CCCCCcEEEEecCc-----hhhhcchHHHHHHHHhCCCcEEEEEEeCCC---CCCchHHHHHHHHHHHHHcCC
Q 025126 36 TGDKKNVLLVIAHP-----DDESMFFSPTINYLTSRRHNLHILCMSNGN---ADGMGNIRKDELHRACAVLKI 100 (257)
Q Consensus 36 ~~~~~~vL~i~aHP-----DDE~l~~Ggtl~~~~~~G~~V~vv~lT~G~---~~~~~~~R~~E~~~A~~~LGv 100 (257)
+.++.+|-+|+|=- +.+.+ --.+.++.+.|.+|.+--.+... ..+-.+.|.+|+.+|.+-=.+
T Consensus 10 L~~GD~I~ivaPSs~~~~~~~~~~--~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i 80 (336)
T 3sr3_A 10 LKYGDTIGIYSPSSPVTYTSPKRF--ERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNV 80 (336)
T ss_dssp CCTTCEEEEECSSSCHHHHCHHHH--HHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTE
T ss_pred CCCCCEEEEEeCCCCccccCHHHH--HHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCC
Confidence 56788899988632 22332 34467788899987652111111 135678999999999864334
No 177
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=24.50 E-value=2.9e+02 Score=22.69 Aligned_cols=73 Identities=10% Similarity=0.044 Sum_probs=42.2
Q ss_pred hHHHHHHHHhC--CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHH
Q 025126 56 FSPTINYLTSR--RHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEE 133 (257)
Q Consensus 56 ~Ggtl~~~~~~--G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~ 133 (257)
...++..+.+. |++= +.++++.. ...+..|.+..+++++..|++ +......+ .++..+.+.++
T Consensus 126 ~~~~~~~l~~~~Pg~~~-I~~i~~~~-~~~~~~r~~g~~~al~~~gi~---~~~~~~~~----------~~~~~~~~~~l 190 (302)
T 2qh8_A 126 VEQHVELIKEILPNVKS-IGVVYNPG-EANAVSLMELLKLSAAKHGIK---LVEATALK----------SADVQSATQAI 190 (302)
T ss_dssp HHHHHHHHHHHSTTCCE-EEEEECTT-CHHHHHHHHHHHHHHHHTTCE---EEEEECSS----------GGGHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcE-EEEEecCC-CcchHHHHHHHHHHHHHcCCE---EEEEecCC----------hHHHHHHHHHH
Confidence 34456666665 8763 34444322 223577999999999999983 22211111 12334445555
Q ss_pred HHhcCCCEEEee
Q 025126 134 VVNCSIDLIITF 145 (257)
Q Consensus 134 i~~~~Pd~V~t~ 145 (257)
.. +||.|++.
T Consensus 191 ~~--~~dai~~~ 200 (302)
T 2qh8_A 191 AE--KSDVIYAL 200 (302)
T ss_dssp GG--GCSEEEEC
T ss_pred hc--cCCEEEEC
Confidence 43 79999986
No 178
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=24.36 E-value=3e+02 Score=23.19 Aligned_cols=95 Identities=9% Similarity=0.079 Sum_probs=45.6
Q ss_pred CCCCcEEEEecCchhhh----cchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCC
Q 025126 37 GDKKNVLLVIAHPDDES----MFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVD 112 (257)
Q Consensus 37 ~~~~~vL~i~aHPDDE~----l~~Ggtl~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d 112 (257)
...++||++.+.+-+.. ..+--.+..+.+.|++|.+++...+... .... ...+. ++..+.+..
T Consensus 18 ~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~-~~~~---------~~~~~---~~~~~~~~~ 84 (406)
T 2gek_A 18 GSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVK-LPDY---------VVSGG---KAVPIPYNG 84 (406)
T ss_dssp ---CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSC-CCTT---------EEECC---CCC------
T ss_pred CCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCcccc-CCcc---------cccCC---cEEeccccC
Confidence 45678999997654321 1112234555678999998887665431 0000 00010 111111100
Q ss_pred CCCCccccCChHHHHHHHHHHHHhcCCCEEEeeCC
Q 025126 113 FQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDN 147 (257)
Q Consensus 113 ~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~ 147 (257)
.. ....+. ......+.+++++.+||+|+++.+
T Consensus 85 ~~--~~~~~~-~~~~~~l~~~l~~~~~Dii~~~~~ 116 (406)
T 2gek_A 85 SV--ARLRFG-PATHRKVKKWIAEGDFDVLHIHEP 116 (406)
T ss_dssp --------CC-HHHHHHHHHHHHHHCCSEEEEECC
T ss_pred Cc--cccccc-HHHHHHHHHHHHhcCCCEEEECCc
Confidence 00 000111 223467788888899999999854
No 179
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=24.17 E-value=3e+02 Score=22.66 Aligned_cols=86 Identities=13% Similarity=0.091 Sum_probs=45.1
Q ss_pred CCCCcEEEEecCchhhhcchHHH-HHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCC
Q 025126 37 GDKKNVLLVIAHPDDESMFFSPT-INYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQD 115 (257)
Q Consensus 37 ~~~~~vL~i~aHPDDE~l~~Ggt-l~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~d 115 (257)
..++++|+.++= =|.|-. ..+++++|.+|.++...+ ..+.++..+.++..|. ++.++.. |..
T Consensus 27 ~~~k~~lVTGas-----~GIG~aia~~la~~G~~V~~~~~~~-------~~~~~~~~~~~~~~~~---~~~~~~~-Dv~- 89 (280)
T 4da9_A 27 KARPVAIVTGGR-----RGIGLGIARALAASGFDIAITGIGD-------AEGVAPVIAELSGLGA---RVIFLRA-DLA- 89 (280)
T ss_dssp CCCCEEEEETTT-----SHHHHHHHHHHHHTTCEEEEEESCC-------HHHHHHHHHHHHHTTC---CEEEEEC-CTT-
T ss_pred cCCCEEEEecCC-----CHHHHHHHHHHHHCCCeEEEEeCCC-------HHHHHHHHHHHHhcCC---cEEEEEe-cCC-
Confidence 345667777763 234444 445678999876654322 2334444444445564 4444332 221
Q ss_pred CccccCChHHHHHHHHHHHHhc-CCCEEEee
Q 025126 116 GFDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (257)
Q Consensus 116 g~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (257)
+.+.+.+.+.++.+++ ++|+++--
T Consensus 90 ------d~~~v~~~~~~~~~~~g~iD~lvnn 114 (280)
T 4da9_A 90 ------DLSSHQATVDAVVAEFGRIDCLVNN 114 (280)
T ss_dssp ------SGGGHHHHHHHHHHHHSCCCEEEEE
T ss_pred ------CHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 2344444555555554 68887765
No 180
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=23.96 E-value=46 Score=30.04 Aligned_cols=27 Identities=7% Similarity=0.095 Sum_probs=19.9
Q ss_pred HHHHHHHHHhcCCCEEEeeCCCCCCCCch
Q 025126 127 AKIVEEEVVNCSIDLIITFDNYGVSGHCN 155 (257)
Q Consensus 127 ~~~l~~~i~~~~Pd~V~t~d~~g~d~H~D 155 (257)
...+..++++++||+|+.. .|.|.|.+
T Consensus 236 ~~~~~~~~~~f~Pd~ivvs--aG~D~~~~ 262 (367)
T 3max_A 236 KPIISKVMEMYQPSAVVLQ--CGADSLSG 262 (367)
T ss_dssp HHHHHHHHHHHCCSEEEEE--CCGGGBTT
T ss_pred HHHHHHHHHHhCCCEEEEE--CCccCcCC
Confidence 3456678899999999987 66665544
No 181
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=23.80 E-value=3e+02 Score=22.90 Aligned_cols=107 Identities=12% Similarity=0.093 Sum_probs=57.8
Q ss_pred chhhhcchHHHH-HHHHh--CCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHc-CCCCCcEEEccCCCCCCCccccCChH
Q 025126 49 PDDESMFFSPTI-NYLTS--RRHNLHILCMSNGNADGMGNIRKDELHRACAVL-KIPLEQVKVLDLVDFQDGFDKLWNHK 124 (257)
Q Consensus 49 PDDE~l~~Ggtl-~~~~~--~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~L-Gv~~~~~~~l~~~d~~dg~~~~~~~~ 124 (257)
+|++. .|-.+ ..+.+ .|++ .+.+++..........|.+...++++.. |++ +.-.-. ..|+.+
T Consensus 116 ~D~~~--~g~~a~~~L~~~~~G~~-~I~~i~g~~~~~~~~~R~~Gf~~al~~~pgi~---~~~~~~--------~~~~~~ 181 (332)
T 2rjo_A 116 YDGVA--YGEETATQLFKSMGGKG-GVVALGGIFSNVPAIERKAGLDAALKKFPGIQ---LLDFQV--------ADWNSQ 181 (332)
T ss_dssp CCHHH--HHHHHHHHHHHHTTTCE-EEEEEECCTTCHHHHHHHHHHHHHHHTCTTEE---EEEEEE--------CTTCHH
T ss_pred cChHH--HHHHHHHHHHHHcCCCC-eEEEEECCCCCccHHHHHHHHHHHHHhCCCcE---EEeecc--------CCCCHH
Confidence 45554 23333 34445 5764 3444543322234577888999999988 772 211100 123455
Q ss_pred HHHHHHHHHHHh--cCCCEEEeeCCCCCCCCchHHHHHHHHHHHHHccCCCCccEEE
Q 025126 125 SLAKIVEEEVVN--CSIDLIITFDNYGVSGHCNHRDVHHGICRSYLNGTSERNIEAW 179 (257)
Q Consensus 125 ~l~~~l~~~i~~--~~Pd~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~~~~~~~~y 179 (257)
...+.+.+++++ -+||.|++.+ |..+ ..+.+|+.+.+...++.+.
T Consensus 182 ~~~~~~~~ll~~~~~~~~aI~~~n--------d~~A--~g~~~al~~~G~~~di~vv 228 (332)
T 2rjo_A 182 KAFPIMQAWMTRFNSKIKGVWAAN--------DDMA--LGAIEALRAEGLAGQIPVT 228 (332)
T ss_dssp HHHHHHHHHHHHHGGGEEEEEESS--------HHHH--HHHHHHHHHTTCBTTBCEE
T ss_pred HHHHHHHHHHHhcCCCeeEEEECC--------CchH--HHHHHHHHHcCCCCCCEEE
Confidence 556667777775 3688888762 3333 3466666655433445443
No 182
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=23.47 E-value=2.1e+02 Score=23.40 Aligned_cols=88 Identities=13% Similarity=0.112 Sum_probs=46.7
Q ss_pred CCCCcEEEEecCchhhhcchHHHH-HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCC
Q 025126 37 GDKKNVLLVIAHPDDESMFFSPTI-NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQD 115 (257)
Q Consensus 37 ~~~~~vL~i~aHPDDE~l~~Ggtl-~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~d 115 (257)
..++++|+.++= =|.|-.+ .+++++|.+|.++.-+.. ...+.+++.+.++..|. ++.++.. |..
T Consensus 9 l~~k~vlVTGas-----~GIG~aia~~la~~G~~V~~~~r~~~-----~~~~~~~~~~~~~~~~~---~~~~~~~-Dv~- 73 (262)
T 3ksu_A 9 LKNKVIVIAGGI-----KNLGALTAKTFALESVNLVLHYHQAK-----DSDTANKLKDELEDQGA---KVALYQS-DLS- 73 (262)
T ss_dssp CTTCEEEEETCS-----SHHHHHHHHHHTTSSCEEEEEESCGG-----GHHHHHHHHHHHHTTTC---EEEEEEC-CCC-
T ss_pred CCCCEEEEECCC-----chHHHHHHHHHHHCCCEEEEEecCcc-----CHHHHHHHHHHHHhcCC---cEEEEEC-CCC-
Confidence 345678887764 2445444 455678998766543221 13344444444444454 4444332 221
Q ss_pred CccccCChHHHHHHHHHHHHhc-CCCEEEee
Q 025126 116 GFDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (257)
Q Consensus 116 g~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (257)
+.+.+.+.+.++.+++ ++|+++--
T Consensus 74 ------d~~~v~~~~~~~~~~~g~iD~lvnn 98 (262)
T 3ksu_A 74 ------NEEEVAKLFDFAEKEFGKVDIAINT 98 (262)
T ss_dssp ------SHHHHHHHHHHHHHHHCSEEEEEEC
T ss_pred ------CHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 3455555566666655 57877654
No 183
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=23.40 E-value=3.2e+02 Score=23.69 Aligned_cols=73 Identities=18% Similarity=-0.059 Sum_probs=43.4
Q ss_pred HHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCC---CCccccCCh---HHHHHHHH
Q 025126 58 PTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQ---DGFDKLWNH---KSLAKIVE 131 (257)
Q Consensus 58 gtl~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~---dg~~~~~~~---~~l~~~l~ 131 (257)
-.|.+..+.|. .+++|+.+ .|..+++..+|. ++.....+-.. -|.....+. .+.++.+.
T Consensus 154 e~I~~A~~~gL-~Ti~~v~~-----------~eeA~amA~agp---DiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~ 218 (286)
T 2p10_A 154 EMIAEAHKLDL-LTTPYVFS-----------PEDAVAMAKAGA---DILVCHMGLTTGGAIGARSGKSMDDCVSLINECI 218 (286)
T ss_dssp HHHHHHHHTTC-EECCEECS-----------HHHHHHHHHHTC---SEEEEECSCC---------CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC-eEEEecCC-----------HHHHHHHHHcCC---CEEEECCCCCCCCcccCCCcccHHHhHHHHHHHH
Confidence 45667777776 45566544 244556678887 56666655111 122222233 35778888
Q ss_pred HHHHhcCCCEEEee
Q 025126 132 EEVVNCSIDLIITF 145 (257)
Q Consensus 132 ~~i~~~~Pd~V~t~ 145 (257)
+.+++.+||+++..
T Consensus 219 ~a~~~vnpdvivLc 232 (286)
T 2p10_A 219 EAARTIRDDIIILS 232 (286)
T ss_dssp HHHHHHCSCCEEEE
T ss_pred HHHHHhCCCcEEEe
Confidence 88999999986665
No 184
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=23.26 E-value=2.3e+02 Score=23.31 Aligned_cols=98 Identities=8% Similarity=0.042 Sum_probs=54.3
Q ss_pred HHHhCC--CcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc--
Q 025126 62 YLTSRR--HNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-- 137 (257)
Q Consensus 62 ~~~~~G--~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-- 137 (257)
.+.+.| ..-.+.+++..........|.+-.+++++..|. .++...-. ..|+.+...+.+.+++++.
T Consensus 119 ~L~~~g~g~~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~--~~~~~~~~--------~~~~~~~~~~~~~~ll~~~~~ 188 (306)
T 2vk2_A 119 WLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN--IKIIRSQS--------GDFTRSKGKEVMESFIKAENN 188 (306)
T ss_dssp HHHHHHTTSCEEEEEEECSTTCHHHHHHHHHHHHHTTTCTT--EEEEEEEE--------CTTCHHHHHHHHHHHHHHTTT
T ss_pred HHHHhcCCCCCeEEEEEcCCCChhHHHHHHHHHHHHhhCCC--eEEEEecc--------CCCcHHHHHHHHHHHHHhCCC
Confidence 445555 123455555332223456788889999888775 12221111 1234555566778888764
Q ss_pred --CCCEEEeeCCCCCCCCchHHHHHHHHHHHHHccCC--CCccEEE
Q 025126 138 --SIDLIITFDNYGVSGHCNHRDVHHGICRSYLNGTS--ERNIEAW 179 (257)
Q Consensus 138 --~Pd~V~t~d~~g~d~H~DH~~~~~av~~A~~~~~~--~~~~~~y 179 (257)
+|+.|++.+ |.. +..+.+|+.+.+. ++++.+.
T Consensus 189 ~~~~~ai~~~n--------d~~--A~g~~~al~~~G~~vP~di~vi 224 (306)
T 2vk2_A 189 GKNICMVYAHN--------DDM--VIGAIQAIKEAGLKPGKDILTG 224 (306)
T ss_dssp TTTCCEEEESS--------HHH--HHHHHHHHHHTTCCBTTTBEEE
T ss_pred CCCeeEEEECC--------chH--HHHHHHHHHHcCCCCCCCeEEE
Confidence 689998872 333 3445666665543 3555554
No 185
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=22.85 E-value=2.7e+02 Score=21.54 Aligned_cols=72 Identities=13% Similarity=0.116 Sum_probs=39.3
Q ss_pred EEEEEeCCCCCC-chHHHHHHHHHHHHHcCCCCCcEEEcc-CCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeCCC
Q 025126 71 HILCMSNGNADG-MGNIRKDELHRACAVLKIPLEQVKVLD-LVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNY 148 (257)
Q Consensus 71 ~vv~lT~G~~~~-~~~~R~~E~~~A~~~LGv~~~~~~~l~-~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~ 148 (257)
.+-++|.|+.-+ ..+.-..-+.+.++.+|+ ++.... .|| +.+.+.+.|.+.+.+.+.|+|+|. .
T Consensus 15 rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~---~v~~~~iv~D---------d~~~i~~~l~~~~~~~~~DlVitt--G 80 (169)
T 1y5e_A 15 RCKIVTISDTRTEETDKSGQLLHELLKEAGH---KVTSYEIVKD---------DKESIQQAVLAGYHKEDVDVVLTN--G 80 (169)
T ss_dssp EEEEEEECSSCCTTTCHHHHHHHHHHHHHTC---EEEEEEEECS---------SHHHHHHHHHHHHTCTTCSEEEEE--C
T ss_pred EEEEEEEcCccCeeccChHHHHHHHHHHCCC---eEeEEEEeCC---------CHHHHHHHHHHHHhcCCCCEEEEc--C
Confidence 344455554322 222222335556677898 233222 233 346777888887764578999998 4
Q ss_pred CCC-CCchH
Q 025126 149 GVS-GHCNH 156 (257)
Q Consensus 149 g~d-~H~DH 156 (257)
|.+ ++-|+
T Consensus 81 G~g~g~~D~ 89 (169)
T 1y5e_A 81 GTGITKRDV 89 (169)
T ss_dssp CCSSSTTCC
T ss_pred CCCCCCCCC
Confidence 432 45554
No 186
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=22.73 E-value=3.3e+02 Score=22.61 Aligned_cols=85 Identities=13% Similarity=0.083 Sum_probs=50.2
Q ss_pred CCCCcEEEEecCchhhhcchHHHHH-HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCC
Q 025126 37 GDKKNVLLVIAHPDDESMFFSPTIN-YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQD 115 (257)
Q Consensus 37 ~~~~~vL~i~aHPDDE~l~~Ggtl~-~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~d 115 (257)
.++|.+|+-++-- |.|-.++ +++++|.+|.++-. .+.+-+|..+.++..|. ++..... |..
T Consensus 5 L~gKvalVTGas~-----GIG~aiA~~la~~Ga~Vv~~~~--------~~~~~~~~~~~i~~~g~---~~~~~~~-Dvt- 66 (254)
T 4fn4_A 5 LKNKVVIVTGAGS-----GIGRAIAKKFALNDSIVVAVEL--------LEDRLNQIVQELRGMGK---EVLGVKA-DVS- 66 (254)
T ss_dssp GTTCEEEEETTTS-----HHHHHHHHHHHHTTCEEEEEES--------CHHHHHHHHHHHHHTTC---CEEEEEC-CTT-
T ss_pred CCCCEEEEeCCCC-----HHHHHHHHHHHHcCCEEEEEEC--------CHHHHHHHHHHHHhcCC---cEEEEEc-cCC-
Confidence 4556777776653 4555554 55689998755332 14455666666666776 4444332 221
Q ss_pred CccccCChHHHHHHHHHHHHhc-CCCEEEee
Q 025126 116 GFDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (257)
Q Consensus 116 g~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (257)
+.+++.+.+.+..+++ ++|+++--
T Consensus 67 ------~~~~v~~~~~~~~~~~G~iDiLVNN 91 (254)
T 4fn4_A 67 ------KKKDVEEFVRRTFETYSRIDVLCNN 91 (254)
T ss_dssp ------SHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred ------CHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 4566666677777776 68887744
No 187
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=22.60 E-value=92 Score=24.21 Aligned_cols=40 Identities=15% Similarity=0.124 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEeeCCCCCC-CCchHHHHHHHHHH
Q 025126 122 NHKSLAKIVEEEVVNCSIDLIITFDNYGVS-GHCNHRDVHHGICR 165 (257)
Q Consensus 122 ~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d-~H~DH~~~~~av~~ 165 (257)
+.+.+.+.|.+.+.+.+.|+|+|. .|.+ ++-|+ +.+++.+
T Consensus 46 d~~~i~~~l~~~~~~~~~DlVitt--GG~g~g~~D~--t~ea~~~ 86 (164)
T 2is8_A 46 EPPMIKKVLRLWADREGLDLILTN--GGTGLAPRDR--TPEATRE 86 (164)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEEE--SCCSSSTTCC--HHHHHHT
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEc--CCCCCCCCCC--hHHHHHH
Confidence 346778888888775568999998 4432 45555 3344443
No 188
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=22.45 E-value=83 Score=25.99 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=26.1
Q ss_pred CCCCcEEEEecCchhhh--cchHHHHHHH-----HhCCCcEEEEEEeC
Q 025126 37 GDKKNVLLVIAHPDDES--MFFSPTINYL-----TSRRHNLHILCMSN 77 (257)
Q Consensus 37 ~~~~~vL~i~aHPDDE~--l~~Ggtl~~~-----~~~G~~V~vv~lT~ 77 (257)
...++||+|.+||+-+. =+....|+.. .+.|++|.++.+..
T Consensus 23 ~~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~ 70 (218)
T 3rpe_A 23 NAMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQ 70 (218)
T ss_dssp -CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred ccCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCC
Confidence 44568999999998321 1223333332 34799999999865
No 189
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens} PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A* 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Probab=22.42 E-value=44 Score=30.80 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=21.3
Q ss_pred HHHHHHHHhcCCCEEEeeCCCCCCCCchH
Q 025126 128 KIVEEEVVNCSIDLIITFDNYGVSGHCNH 156 (257)
Q Consensus 128 ~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH 156 (257)
+.+..++++++||+|+.- .|.|.|.++
T Consensus 298 ~~l~p~~~~F~PdlIvvs--aG~Da~~gD 324 (421)
T 2pqp_A 298 IVVMPIAREFSPDLVLVS--AGFDAAEGH 324 (421)
T ss_dssp HTHHHHHHHHCCSEEEEE--ECCTTBTTC
T ss_pred HHHHHHHHHhCCCEEEEe--CCccccccc
Confidence 345677899999999988 788888643
No 190
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=22.22 E-value=80 Score=27.03 Aligned_cols=14 Identities=7% Similarity=0.055 Sum_probs=9.9
Q ss_pred CCcEEEEecCchhh
Q 025126 39 KKNVLLVIAHPDDE 52 (257)
Q Consensus 39 ~~~vL~i~aHPDDE 52 (257)
+-.|.++...+++.
T Consensus 52 G~~V~v~~~~~~~~ 65 (406)
T 2gek_A 52 GHEVSVLAPASPHV 65 (406)
T ss_dssp TCEEEEEESCCTTS
T ss_pred CCeEEEEecCCccc
Confidence 45788888877665
No 191
>3k94_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.10A {Geobacillus thermodenitrificans}
Probab=22.21 E-value=1.8e+02 Score=24.05 Aligned_cols=27 Identities=15% Similarity=0.066 Sum_probs=19.4
Q ss_pred hcCCCEEEeeCCCCCCCCchHHHHHHHHH
Q 025126 136 NCSIDLIITFDNYGVSGHCNHRDVHHGIC 164 (257)
Q Consensus 136 ~~~Pd~V~t~d~~g~d~H~DH~~~~~av~ 164 (257)
+..++.|+.. .+..+-.||....-...
T Consensus 90 ~~g~~~I~i~--Ga~GGR~DH~lani~lL 116 (223)
T 3k94_A 90 EQTARCIRLF--GATGGRLDHLFGNVELL 116 (223)
T ss_dssp TTCCSEEEEE--SCSSSSHHHHHHHHHHH
T ss_pred HcCCCEEEEE--cCCCCchhHHHHHHHHH
Confidence 3477888888 55668999987765444
No 192
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A
Probab=22.19 E-value=71 Score=25.26 Aligned_cols=31 Identities=16% Similarity=-0.019 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCC---C-EEEeeCCCCCCCCchHHHHHHHH
Q 025126 127 AKIVEEEVVNCSI---D-LIITFDNYGVSGHCNHRDVHHGI 163 (257)
Q Consensus 127 ~~~l~~~i~~~~P---d-~V~t~d~~g~d~H~DH~~~~~av 163 (257)
.+.+.+.+++..+ + +|+|| .|+||.......
T Consensus 46 ~~~~~~~l~~~~~~~i~~ii~TH------~H~DH~gg~~~l 80 (227)
T 3iog_A 46 ARELHKLIKRVSRKPVLEVINTN------YHTDRAGGNAYW 80 (227)
T ss_dssp HHHHHHHHHTTCCSCEEEEECSS------SSHHHHTTHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEEeCC------CchhhcChHHHH
Confidence 3456666666443 2 56677 699999765543
No 193
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=22.11 E-value=3e+02 Score=21.82 Aligned_cols=88 Identities=9% Similarity=0.043 Sum_probs=45.7
Q ss_pred CCCCcEEEEecCchhhhcchHHH-HHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCC
Q 025126 37 GDKKNVLLVIAHPDDESMFFSPT-INYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQD 115 (257)
Q Consensus 37 ~~~~~vL~i~aHPDDE~l~~Ggt-l~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~d 115 (257)
..++++|+.++= =|.|-. ..++.++|.+|.++. .. ..+.++..+.++..|.+...+...+. |.
T Consensus 12 l~~k~vlITGas-----~gIG~~ia~~l~~~G~~V~~~~--r~------~~~~~~~~~~~~~~~~~~~~~~~~d~-d~-- 75 (247)
T 3i1j_A 12 LKGRVILVTGAA-----RGIGAAAARAYAAHGASVVLLG--RT------EASLAEVSDQIKSAGQPQPLIIALNL-EN-- 75 (247)
T ss_dssp TTTCEEEESSTT-----SHHHHHHHHHHHHTTCEEEEEE--SC------HHHHHHHHHHHHHTTSCCCEEEECCT-TT--
T ss_pred CCCCEEEEeCCC-----ChHHHHHHHHHHHCCCEEEEEe--cC------HHHHHHHHHHHHhcCCCCceEEEecc-cc--
Confidence 345667777663 233444 455678899865543 21 34455555556666642223333333 11
Q ss_pred CccccCChHHHHHHHHHHHHhc-CCCEEEee
Q 025126 116 GFDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (257)
Q Consensus 116 g~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (257)
-+.+.+.+.+.++.+++ ++|+++--
T Consensus 76 -----~~~~~~~~~~~~~~~~~g~id~lv~n 101 (247)
T 3i1j_A 76 -----ATAQQYRELAARVEHEFGRLDGLLHN 101 (247)
T ss_dssp -----CCHHHHHHHHHHHHHHHSCCSEEEEC
T ss_pred -----CCHHHHHHHHHHHHHhCCCCCEEEEC
Confidence 13344444445554444 68887754
No 194
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=21.88 E-value=3.2e+02 Score=22.15 Aligned_cols=85 Identities=12% Similarity=0.056 Sum_probs=43.8
Q ss_pred CCCcEEEEecCchhhhcchHHHH-HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCC
Q 025126 38 DKKNVLLVIAHPDDESMFFSPTI-NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDG 116 (257)
Q Consensus 38 ~~~~vL~i~aHPDDE~l~~Ggtl-~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg 116 (257)
.++++|+.++= =|.|-.+ .+++++|.+|.+++..+ ..+.++..+.++..|. ++.++.. |..
T Consensus 25 ~~k~vlITGas-----~gIG~a~a~~l~~~G~~V~~~~~~~-------~~~~~~~~~~~~~~~~---~~~~~~~-Dl~-- 86 (272)
T 4e3z_A 25 DTPVVLVTGGS-----RGIGAAVCRLAARQGWRVGVNYAAN-------REAADAVVAAITESGG---EAVAIPG-DVG-- 86 (272)
T ss_dssp CSCEEEETTTT-----SHHHHHHHHHHHHTTCEEEEEESSC-------HHHHHHHHHHHHHTTC---EEEEEEC-CTT--
T ss_pred CCCEEEEECCC-----chHHHHHHHHHHHCCCEEEEEcCCC-------hhHHHHHHHHHHhcCC---cEEEEEc-CCC--
Confidence 34556666553 2344444 45668899875543322 3344445555555554 4444432 221
Q ss_pred ccccCChHHHHHHHHHHHHhc-CCCEEEee
Q 025126 117 FDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (257)
Q Consensus 117 ~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (257)
+.+.+.+.+.++.+++ ++|+|+--
T Consensus 87 -----~~~~v~~~~~~~~~~~g~id~li~n 111 (272)
T 4e3z_A 87 -----NAADIAAMFSAVDRQFGRLDGLVNN 111 (272)
T ss_dssp -----CHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred -----CHHHHHHHHHHHHHhCCCCCEEEEC
Confidence 3345545555555544 68887755
No 195
>3s5j_B Ribose-phosphate pyrophosphokinase 1; nucleotide synthesis, transferase; 2.02A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h06_A 2h07_A 2h08_A
Probab=21.79 E-value=1.9e+02 Score=25.45 Aligned_cols=60 Identities=22% Similarity=0.115 Sum_probs=37.8
Q ss_pred CCCCcEEEEecCchhhhcchHHHHHHHH----hCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccC
Q 025126 37 GDKKNVLLVIAHPDDESMFFSPTINYLT----SRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDL 110 (257)
Q Consensus 37 ~~~~~vL~i~aHPDDE~l~~Ggtl~~~~----~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~ 110 (257)
..++++++| ||. +.-|||+...+ ++|.+...+++|-|-..+.+..|-++ -++ +.+.+.+-
T Consensus 211 v~gk~viIV----DDi-i~TG~Tl~~a~~~L~~~Ga~~v~~~~tH~v~~~~a~e~l~~-------~~i--~~vv~t~t 274 (326)
T 3s5j_B 211 VKDRVAILV----DDM-ADTCGTICHAADKLLSAGATRVYAILTHGIFSGPAISRINN-------ACF--EAVVVTNT 274 (326)
T ss_dssp CTTSEEEEE----EEE-ESSCHHHHHHHHHHHHTTCSEEEEEEEEECCCTTHHHHHHH-------SCC--SEEEEETT
T ss_pred CCCCEEEEE----ccc-cCCcHHHHHHHHHHHHcCCCEEEEEEEecccCchHHHHHhh-------CCC--CEEEEecC
Confidence 456677777 654 67899988765 57887777777766433333333322 356 56777664
No 196
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=21.62 E-value=1.1e+02 Score=26.40 Aligned_cols=41 Identities=20% Similarity=0.044 Sum_probs=25.8
Q ss_pred CCcEEEEecCchhhhcchHH-----HHHHHHhCCCcEEEEEEeCCC
Q 025126 39 KKNVLLVIAHPDDESMFFSP-----TINYLTSRRHNLHILCMSNGN 79 (257)
Q Consensus 39 ~~~vL~i~aHPDDE~l~~Gg-----tl~~~~~~G~~V~vv~lT~G~ 79 (257)
.+|||+|+.+.--...|..+ ....+.+.|++|++++...+.
T Consensus 2 ~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~ 47 (439)
T 3fro_A 2 HMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPSHGR 47 (439)
T ss_dssp CCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEEECTTC
T ss_pred ceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 47899999762222232222 234556789999999965543
No 197
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=21.51 E-value=3.4e+02 Score=22.21 Aligned_cols=85 Identities=13% Similarity=0.095 Sum_probs=45.5
Q ss_pred CCCcEEEEecCchhhhcchHHHH-HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCC
Q 025126 38 DKKNVLLVIAHPDDESMFFSPTI-NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDG 116 (257)
Q Consensus 38 ~~~~vL~i~aHPDDE~l~~Ggtl-~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg 116 (257)
.++++|+.++= =|.|-.+ .+++++|.+|.++...+ ..+.++..+..+..|. ++.++.. |..
T Consensus 27 ~~k~vlVTGas-----~gIG~aia~~la~~G~~V~~~~~~~-------~~~~~~~~~~~~~~~~---~~~~~~~-D~~-- 88 (269)
T 4dmm_A 27 TDRIALVTGAS-----RGIGRAIALELAAAGAKVAVNYASS-------AGAADEVVAAIAAAGG---EAFAVKA-DVS-- 88 (269)
T ss_dssp TTCEEEETTCS-----SHHHHHHHHHHHHTTCEEEEEESSC-------HHHHHHHHHHHHHTTC---CEEEEEC-CTT--
T ss_pred CCCEEEEECCC-----CHHHHHHHHHHHHCCCEEEEEeCCC-------hHHHHHHHHHHHhcCC---cEEEEEC-CCC--
Confidence 45566766653 2444444 45678999886654322 3344555555555665 3444322 221
Q ss_pred ccccCChHHHHHHHHHHHHhc-CCCEEEee
Q 025126 117 FDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (257)
Q Consensus 117 ~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (257)
+.+.+.+.+.++.+++ ++|+++--
T Consensus 89 -----d~~~v~~~~~~~~~~~g~id~lv~n 113 (269)
T 4dmm_A 89 -----QESEVEALFAAVIERWGRLDVLVNN 113 (269)
T ss_dssp -----SHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred -----CHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 3345555555555554 68887754
No 198
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=21.50 E-value=66 Score=24.26 Aligned_cols=58 Identities=10% Similarity=0.145 Sum_probs=30.3
Q ss_pred cEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeC-CCCCCc-hHHHHHHHHHH-HHHcCCCCCcEE
Q 025126 41 NVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSN-GNADGM-GNIRKDELHRA-CAVLKIPLEQVK 106 (257)
Q Consensus 41 ~vL~i~aHPDDE~l~~Ggtl~~~~~~G~~V~vv~lT~-G~~~~~-~~~R~~E~~~A-~~~LGv~~~~~~ 106 (257)
..+.|.-|| |..|.+||+ ..+..++.++. |..+.. .+.=.+++.+. .+.||+++++++
T Consensus 57 ~~v~V~~~~-~~~m~fgGs-------~dP~a~v~v~sig~~~~e~n~~~s~~i~~~l~~~LgI~~~rvy 117 (133)
T 3fwt_A 57 DFVMTAFSD-KTPISFQGS-------TAPAAYVRVESWGEYAPSKPKMMTPRIAAAITKECGIPAERIY 117 (133)
T ss_dssp CCCEEEEEC-SCCCCBTTB-------CSSCEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHCCCGGGEE
T ss_pred CEEEEEEEC-CceEEECCC-------CCCeEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcChhhEE
Confidence 355555565 556777876 23555666654 433211 11111233332 456899988764
No 199
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=21.22 E-value=3.2e+02 Score=21.84 Aligned_cols=84 Identities=12% Similarity=0.165 Sum_probs=43.5
Q ss_pred CCcEEEEecCchhhhcchHHHH-HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCc
Q 025126 39 KKNVLLVIAHPDDESMFFSPTI-NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGF 117 (257)
Q Consensus 39 ~~~vL~i~aHPDDE~l~~Ggtl-~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~ 117 (257)
++++|+.++= =|.|-.+ .++.++|.+|.++...+ ..+.++..+.++..|. ++.++.. |..
T Consensus 4 ~k~~lVTGas-----~gIG~~ia~~l~~~G~~V~~~~~~~-------~~~~~~~~~~~~~~~~---~~~~~~~-Dv~--- 64 (246)
T 3osu_A 4 TKSALVTGAS-----RGIGRSIALQLAEEGYNVAVNYAGS-------KEKAEAVVEEIKAKGV---DSFAIQA-NVA--- 64 (246)
T ss_dssp SCEEEETTCS-----SHHHHHHHHHHHHTTCEEEEEESSC-------HHHHHHHHHHHHHTTS---CEEEEEC-CTT---
T ss_pred CCEEEEECCC-----ChHHHHHHHHHHHCCCEEEEEeCCC-------HHHHHHHHHHHHhcCC---cEEEEEc-cCC---
Confidence 3456655543 2344444 45678899876544221 2344455555555565 3443322 221
Q ss_pred cccCChHHHHHHHHHHHHhc-CCCEEEee
Q 025126 118 DKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (257)
Q Consensus 118 ~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (257)
+.+.+.+.+.++.+++ ++|+++--
T Consensus 65 ----d~~~v~~~~~~~~~~~g~id~lv~n 89 (246)
T 3osu_A 65 ----DADEVKAMIKEVVSQFGSLDVLVNN 89 (246)
T ss_dssp ----CHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred ----CHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 3445555555555554 68887754
No 200
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=21.21 E-value=72 Score=25.26 Aligned_cols=41 Identities=12% Similarity=0.123 Sum_probs=27.9
Q ss_pred CCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCC
Q 025126 38 DKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNG 78 (257)
Q Consensus 38 ~~~~vL~i~aHPDDE~l~~Ggtl~~~~~~G~~V~vv~lT~G 78 (257)
..+++++|.+.++=|.+-+-..+..+.++|.+|.++..+.|
T Consensus 6 ~t~~~v~il~~~gFe~~E~~~p~~~l~~ag~~V~~~s~~~~ 46 (177)
T 4hcj_A 6 KTNNILYVMSGQNFQDEEYFESKKIFESAGYKTKVSSTFIG 46 (177)
T ss_dssp CCCEEEEECCSEEECHHHHHHHHHHHHHTTCEEEEEESSSE
T ss_pred cCCCEEEEECCCCccHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 34466666665543333456788889999999998876554
No 201
>3ihk_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SMR83; HET: TPP; 3.00A {Streptococcus mutans}
Probab=21.17 E-value=3.4e+02 Score=22.11 Aligned_cols=91 Identities=12% Similarity=0.039 Sum_probs=54.6
Q ss_pred hhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHH
Q 025126 51 DESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIV 130 (257)
Q Consensus 51 DE~l~~Ggtl~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l 130 (257)
|-.++|-|-...+.+.|....+++ ||.+...+ |..+..+..|+ . +..+|.-+|.. +....|
T Consensus 20 ~~~i~~DgGa~~l~~~g~~Pd~iv---GDfDSi~~----~~~~~~~~~~~---~--i~~~~~eKD~T-------D~e~Al 80 (218)
T 3ihk_A 20 DYFVGIDKGSSFLLKNQLPLDLAI---GDFDSVSA----EEFKQIKAKAK---K--LVMAPAEKNDT-------DTELAL 80 (218)
T ss_dssp SEEEEETHHHHHHHHTTCCCSEEE---ECCTTSCH----HHHHHHHTTCS---S--EEECCSSCSSC-------HHHHHH
T ss_pred CEEEEEcHHHHHHHHcCCCCCEEE---eCcccCCH----HHHHHHHhcCC---e--EEECCCCCCCC-------HHHHHH
Confidence 567788888888899998776555 77666532 22233344565 2 33344333321 223345
Q ss_pred HHHHHhcCCCEEEeeCCCCCCCCchHHHHHHH
Q 025126 131 EEEVVNCSIDLIITFDNYGVSGHCNHRDVHHG 162 (257)
Q Consensus 131 ~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~a 162 (257)
...+++..++-|+.. .+..+-.||....-.
T Consensus 81 ~~a~~~~~~~~I~i~--Ga~GGR~DH~lani~ 110 (218)
T 3ihk_A 81 KTIFDCFGRVEIIVF--GAFGGRIDHMLSNIF 110 (218)
T ss_dssp HHHHHHTSSCEEEEE--SCSSSCHHHHHHHHT
T ss_pred HHHHHhCCCCEEEEE--CCCCCchhhHHHHHH
Confidence 555555567777777 455689999876543
No 202
>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*
Probab=20.95 E-value=3.3e+02 Score=21.98 Aligned_cols=86 Identities=14% Similarity=0.130 Sum_probs=44.8
Q ss_pred CCCCcEEEEecCchhhhcchHHH-HHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCC
Q 025126 37 GDKKNVLLVIAHPDDESMFFSPT-INYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQD 115 (257)
Q Consensus 37 ~~~~~vL~i~aHPDDE~l~~Ggt-l~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~d 115 (257)
..++++|+.++= =|.|-. ..++.++|.+|.+++-.+ ..+.++..+.....|. ++.+... |..
T Consensus 24 l~~k~vlVTGas-----~gIG~~la~~l~~~G~~v~i~~~r~-------~~~~~~~~~~l~~~~~---~~~~~~~-Dl~- 86 (267)
T 4iiu_A 24 AMSRSVLVTGAS-----KGIGRAIARQLAADGFNIGVHYHRD-------AAGAQETLNAIVANGG---NGRLLSF-DVA- 86 (267)
T ss_dssp -CCCEEEETTTT-----SHHHHHHHHHHHHTTCEEEEEESSC-------HHHHHHHHHHHHHTTC---CEEEEEC-CTT-
T ss_pred cCCCEEEEECCC-----ChHHHHHHHHHHHCCCEEEEEeCCc-------hHHHHHHHHHHHhcCC---ceEEEEe-cCC-
Confidence 455667766653 233433 445678999875544221 3344444444555554 3444332 221
Q ss_pred CccccCChHHHHHHHHHHHHhc-CCCEEEee
Q 025126 116 GFDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (257)
Q Consensus 116 g~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (257)
+.+.+.+.+.++.+++ ++|+++--
T Consensus 87 ------~~~~~~~~~~~~~~~~g~id~li~n 111 (267)
T 4iiu_A 87 ------NREQCREVLEHEIAQHGAWYGVVSN 111 (267)
T ss_dssp ------CHHHHHHHHHHHHHHHCCCSEEEEC
T ss_pred ------CHHHHHHHHHHHHHHhCCccEEEEC
Confidence 3455555566666555 68887654
No 203
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=20.92 E-value=3.6e+02 Score=22.32 Aligned_cols=85 Identities=16% Similarity=0.191 Sum_probs=45.8
Q ss_pred CCCcEEEEecCchhhhcchHHH-HHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCC
Q 025126 38 DKKNVLLVIAHPDDESMFFSPT-INYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDG 116 (257)
Q Consensus 38 ~~~~vL~i~aHPDDE~l~~Ggt-l~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg 116 (257)
.++++|+.++= =|.|-. ..+++++|.+|.++.... +...++..+..+..|. ++.++.. |..
T Consensus 46 ~gk~vlVTGas-----~GIG~aia~~la~~G~~V~~~~r~~-------~~~~~~~~~~~~~~~~---~~~~~~~-Dv~-- 107 (291)
T 3ijr_A 46 KGKNVLITGGD-----SGIGRAVSIAFAKEGANIAIAYLDE-------EGDANETKQYVEKEGV---KCVLLPG-DLS-- 107 (291)
T ss_dssp TTCEEEEETTT-----SHHHHHHHHHHHHTTCEEEEEESSC-------HHHHHHHHHHHHTTTC---CEEEEES-CTT--
T ss_pred CCCEEEEeCCC-----cHHHHHHHHHHHHCCCEEEEEeCCc-------hHHHHHHHHHHHhcCC---cEEEEEC-CCC--
Confidence 55678888764 244444 445678899876554321 2233344444455564 4444432 221
Q ss_pred ccccCChHHHHHHHHHHHHhc-CCCEEEee
Q 025126 117 FDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (257)
Q Consensus 117 ~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (257)
+.+.+.+.+.++.+++ ++|+++--
T Consensus 108 -----d~~~v~~~~~~~~~~~g~iD~lvnn 132 (291)
T 3ijr_A 108 -----DEQHCKDIVQETVRQLGSLNILVNN 132 (291)
T ss_dssp -----SHHHHHHHHHHHHHHHSSCCEEEEC
T ss_pred -----CHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 3455555566666655 57887754
No 204
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=20.83 E-value=64 Score=29.07 Aligned_cols=28 Identities=11% Similarity=0.042 Sum_probs=20.3
Q ss_pred HHHHHHHHHhcCCCEEEeeCCCCCCCCchH
Q 025126 127 AKIVEEEVVNCSIDLIITFDNYGVSGHCNH 156 (257)
Q Consensus 127 ~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH 156 (257)
.+.+...+++++||+|+.- .|.|.|.+-
T Consensus 280 ~~~~l~~l~~f~PdlIvvs--aG~Da~~~D 307 (362)
T 3men_A 280 VDDALRELRRFAPDALVLS--LGFDVYRDD 307 (362)
T ss_dssp HHHHHHHHHHHCCSEEEEE--ECSTTBTTC
T ss_pred HHHHHHHHHhcCCCEEEEE--CcccCcCCC
Confidence 3444457899999999988 677766544
No 205
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=20.78 E-value=3.4e+02 Score=22.02 Aligned_cols=93 Identities=9% Similarity=0.069 Sum_probs=49.5
Q ss_pred CCCCcEEEEecCchhhhcchHHH-HHHHHhCCCcEEEEEEeCCCCC----CchHHHHHHHHHHHHHcCCCCCcEEEccCC
Q 025126 37 GDKKNVLLVIAHPDDESMFFSPT-INYLTSRRHNLHILCMSNGNAD----GMGNIRKDELHRACAVLKIPLEQVKVLDLV 111 (257)
Q Consensus 37 ~~~~~vL~i~aHPDDE~l~~Ggt-l~~~~~~G~~V~vv~lT~G~~~----~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~ 111 (257)
..++++|+.++= =|.|-. ..+++++|.+|.++........ .....+.++.....+..|. ++.++..
T Consensus 8 l~gk~vlVTGas-----~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~- 78 (287)
T 3pxx_A 8 VQDKVVLVTGGA-----RGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGR---KAYTAEV- 78 (287)
T ss_dssp TTTCEEEEETTT-----SHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTS---CEEEEEC-
T ss_pred cCCCEEEEeCCC-----ChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCC---ceEEEEc-
Confidence 345678887764 234443 4456789999876654422211 1123344444444555564 4444332
Q ss_pred CCCCCccccCChHHHHHHHHHHHHhc-CCCEEEee
Q 025126 112 DFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (257)
Q Consensus 112 d~~dg~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (257)
|.. +.+.+.+.+.++.+++ ++|+++--
T Consensus 79 D~~-------~~~~v~~~~~~~~~~~g~id~lv~n 106 (287)
T 3pxx_A 79 DVR-------DRAAVSRELANAVAEFGKLDVVVAN 106 (287)
T ss_dssp CTT-------CHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred cCC-------CHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 221 3455555666666665 68887754
No 206
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=20.74 E-value=4.4e+02 Score=23.54 Aligned_cols=45 Identities=13% Similarity=0.159 Sum_probs=27.9
Q ss_pred HHHH--HHHHhCCCcEEEEEEeCCC-CCCchHHHHHHHHHHHHHcCCC
Q 025126 57 SPTI--NYLTSRRHNLHILCMSNGN-ADGMGNIRKDELHRACAVLKIP 101 (257)
Q Consensus 57 Ggtl--~~~~~~G~~V~vv~lT~G~-~~~~~~~R~~E~~~A~~~LGv~ 101 (257)
||-+ ..|.+.|++-.+.+-..-. .......|.+-.++||+-+|++
T Consensus 143 Ggy~A~~~Li~~Ghk~Ia~Isgp~~~~~~~~~~R~~Gyk~Al~e~Gi~ 190 (371)
T 3qi7_A 143 RGKVLAERSKEMGAKAFIHYASTDDLKDVNIAKRLEMIKETCKNIGLP 190 (371)
T ss_dssp HHHHHHHHHHHTTCSCEEEEEETTGGGSHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCCCEEEEEeccccccchhHHHHHHHHHHHHHHcCCC
Confidence 4543 4567889874333322111 1123456999999999999994
No 207
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A
Probab=20.67 E-value=69 Score=26.55 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=13.6
Q ss_pred EEEeeCCCCCCCCchHHHHHHHHHH
Q 025126 141 LIITFDNYGVSGHCNHRDVHHGICR 165 (257)
Q Consensus 141 ~V~t~d~~g~d~H~DH~~~~~av~~ 165 (257)
+++|| .|.||........+
T Consensus 97 ii~TH------~H~DH~gg~~~l~~ 115 (294)
T 3m8t_A 97 ILNTH------AHLDHTGGFAEIKK 115 (294)
T ss_dssp EECSC------CCHHHHTTHHHHHH
T ss_pred EEECC------CCccccccHHHHhh
Confidence 46677 69999987665554
No 208
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=20.55 E-value=3.4e+02 Score=21.86 Aligned_cols=87 Identities=16% Similarity=0.145 Sum_probs=45.0
Q ss_pred CCCCcEEEEecCchhhhcchHHHH-HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCC
Q 025126 37 GDKKNVLLVIAHPDDESMFFSPTI-NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQD 115 (257)
Q Consensus 37 ~~~~~vL~i~aHPDDE~l~~Ggtl-~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~d 115 (257)
..++++|+.++= --|.|-.+ .++.++|.+|.++.- . ..+.++..+..+..+- .++.++.. |..
T Consensus 20 l~~k~vlITGas----g~GIG~~~a~~l~~~G~~V~~~~r--~------~~~~~~~~~~l~~~~~--~~~~~~~~-Dl~- 83 (266)
T 3o38_A 20 LKGKVVLVTAAA----GTGIGSTTARRALLEGADVVISDY--H------ERRLGETRDQLADLGL--GRVEAVVC-DVT- 83 (266)
T ss_dssp TTTCEEEESSCS----SSSHHHHHHHHHHHTTCEEEEEES--C------HHHHHHHHHHHHTTCS--SCEEEEEC-CTT-
T ss_pred CCCCEEEEECCC----CCchHHHHHHHHHHCCCEEEEecC--C------HHHHHHHHHHHHhcCC--CceEEEEe-CCC-
Confidence 456677877762 03455544 456788998655432 1 2334444444444443 24444432 221
Q ss_pred CccccCChHHHHHHHHHHHHhc-CCCEEEee
Q 025126 116 GFDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (257)
Q Consensus 116 g~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (257)
+.+.+.+.+.++.+++ ++|+++--
T Consensus 84 ------~~~~v~~~~~~~~~~~g~id~li~~ 108 (266)
T 3o38_A 84 ------STEAVDALITQTVEKAGRLDVLVNN 108 (266)
T ss_dssp ------CHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred ------CHHHHHHHHHHHHHHhCCCcEEEEC
Confidence 3345555555555554 67887755
No 209
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=20.48 E-value=1.5e+02 Score=21.61 Aligned_cols=61 Identities=13% Similarity=0.211 Sum_probs=33.4
Q ss_pred CcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeC--CCCCCchHHHHHHHHHH-HHHcCCCCCcEEE
Q 025126 40 KNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSN--GNADGMGNIRKDELHRA-CAVLKIPLEQVKV 107 (257)
Q Consensus 40 ~~vL~i~aHPDDE~l~~Ggtl~~~~~~G~~V~vv~lT~--G~~~~~~~~R~~E~~~A-~~~LGv~~~~~~~ 107 (257)
...+++..||++.-+ +|| ........+.++. |-.....+.-.+++.++ .+.||++++++.+
T Consensus 36 ~~~v~i~~~~~~~~~-~gg------~~~~~~~~i~i~~~~grt~eqK~~l~~~l~~~l~~~lg~~~~~v~V 99 (128)
T 1mww_A 36 KHAIRFLCLEKEDFY-YPF------DRSDDYTVIEINLMAGRMEGTKKRLIKMLFSELEYKLGIRAHDVEI 99 (128)
T ss_dssp SSCEEEEEECGGGEE-CCT------TSCTTCEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHCCCGGGEEE
T ss_pred HEEEEEEEeChHHee-cCC------CCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEE
Confidence 357788999877754 555 3344555555552 32111222223444444 4579999877653
No 210
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=20.48 E-value=1.1e+02 Score=23.04 Aligned_cols=59 Identities=10% Similarity=0.110 Sum_probs=32.2
Q ss_pred CcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCch--HHHHHHHHHH-HHHcCCCCCcEE
Q 025126 40 KNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMG--NIRKDELHRA-CAVLKIPLEQVK 106 (257)
Q Consensus 40 ~~vL~i~aHPDDE~l~~Ggtl~~~~~~G~~V~vv~lT~G~~~~~~--~~R~~E~~~A-~~~LGv~~~~~~ 106 (257)
...+.|.-|| |..|.+||+ ..++.++.++....-+.. +.=.+++.+. .+.||+++++++
T Consensus 56 e~~vmV~~~~-~~~m~fgGs-------~dP~a~v~i~sig~~~~e~n~~~s~~i~~~l~~~LgI~~~riy 117 (133)
T 3fwu_A 56 EDLVMMTFHD-STPMHFFGS-------TDPVACVRVEALGGYGPSEPEKVTSIVTAAITKECGIVADRIF 117 (133)
T ss_dssp GGGCEEEEEC-SCCCCBTTB-------CSSCEEEEEECTTCCCTTHHHHHHHHHHHHHHHHHCCCGGGEE
T ss_pred ccEEEEEEEC-CceEEECCc-------CCCEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcChhhEE
Confidence 3456666675 566777876 255667777654322111 1111233332 456899988764
No 211
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=20.32 E-value=60 Score=28.98 Aligned_cols=28 Identities=11% Similarity=0.095 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCCCEEEeeCCCCCCCCchH
Q 025126 127 AKIVEEEVVNCSIDLIITFDNYGVSGHCNH 156 (257)
Q Consensus 127 ~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH 156 (257)
.+.+...+++++||+|+.. .|.|.|.+-
T Consensus 262 ~~~~l~~l~~f~Pd~ivvs--aG~D~~~~D 289 (341)
T 3q9b_A 262 LTDSLKRIAAFGAEAIVVS--LGVDTFEQD 289 (341)
T ss_dssp HHHHHHHHHHHTCSCEEEE--ECCTTBTTC
T ss_pred HHHHHHHHHhhCCCEEEEe--CCccccCCC
Confidence 3344456889999999987 677666543
No 212
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=20.30 E-value=1.1e+02 Score=24.01 Aligned_cols=39 Identities=21% Similarity=0.314 Sum_probs=30.2
Q ss_pred CCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeC
Q 025126 38 DKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSN 77 (257)
Q Consensus 38 ~~~~vL~i~aHPDDE~l~~Ggtl~~~~~~G~~V~vv~lT~ 77 (257)
+.++++++.+ |+=+.+.+.+.+..+.++|.+|.++..+.
T Consensus 4 m~kkv~ill~-~g~~~~e~~~~~~~l~~ag~~v~~~s~~~ 42 (190)
T 4e08_A 4 MSKSALVILA-PGAEEMEFIIAADVLRRAGIKVTVAGLNG 42 (190)
T ss_dssp CCCEEEEEEC-TTCCHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCcEEEEEEC-CCchHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 3467777765 56677778899999999999988887765
Done!