Query 025128
Match_columns 257
No_of_seqs 177 out of 1236
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 04:17:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025128.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025128hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h3g_B Parathyroid hormone-rel 10.0 1.3E+02 0.0046 15.5 1.3 9 132-140 12-20 (24)
2 2jp3_A FXYD domain-containing 8.1 4.1E+02 0.014 17.3 3.4 17 63-79 19-35 (67)
3 2jo1_A Phospholemman; FXYD1, N 7.3 4.6E+02 0.016 17.3 3.4 19 63-81 18-36 (72)
4 2b2h_A AMT-1, ammonium transpo 7.1 1.2E+03 0.04 20.6 7.3 19 5-23 269-287 (399)
5 3n2f_G Na+/K+ ATPase gamma sub 6.2 4.2E+02 0.014 14.5 2.4 20 60-79 9-28 (31)
6 2l8s_A Integrin alpha-1; trans 6.0 5.7E+02 0.019 15.9 4.6 15 67-81 10-24 (54)
7 2zxe_G FXYD10, phospholemman-l 6.0 4.6E+02 0.016 17.4 2.9 11 67-77 25-35 (74)
8 1v54_D Cytochrome C oxidase su 5.8 6.9E+02 0.024 18.8 4.2 31 208-238 59-90 (147)
9 2y69_D Cytochrome C oxidase su 5.0 8E+02 0.027 18.9 4.2 20 209-228 82-101 (169)
10 2l9u_A Receptor tyrosine-prote 4.6 5.8E+02 0.02 14.3 2.9 7 204-210 23-29 (40)
No 1
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=10.01 E-value=1.3e+02 Score=15.49 Aligned_cols=9 Identities=22% Similarity=0.353 Sum_probs=6.9
Q ss_pred HhhhhhHHH
Q 025128 132 SLHNFPEGM 140 (257)
Q Consensus 132 ~lHs~~eGl 140 (257)
.+||..||+
T Consensus 12 wL~~ll~~v 20 (24)
T 3h3g_B 12 FLHHLIAEI 20 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 468888875
No 2
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=8.07 E-value=4.1e+02 Score=17.30 Aligned_cols=17 Identities=24% Similarity=0.471 Sum_probs=8.6
Q ss_pred hhhhHHHHHHHHHHHHH
Q 025128 63 SIGFLKGNLWFFSGVIF 79 (257)
Q Consensus 63 ~~~~~~~~~~~~~G~~~ 79 (257)
..+...+.+.|++|+++
T Consensus 19 igGLifA~vLfi~GI~i 35 (67)
T 2jp3_A 19 LGGLIFGGLLCIAGIAL 35 (67)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ecchhhHHHHHHHHHHH
Confidence 33444455556666544
No 3
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=7.32 E-value=4.6e+02 Score=17.25 Aligned_cols=19 Identities=16% Similarity=0.410 Sum_probs=10.5
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 025128 63 SIGFLKGNLWFFSGVIFFA 81 (257)
Q Consensus 63 ~~~~~~~~~~~~~G~~~~~ 81 (257)
..+...+.+.|++|+++.+
T Consensus 18 iGGLifA~vLfi~GI~iil 36 (72)
T 2jo1_A 18 IGGLVIAGILFILGILIVL 36 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHH
Confidence 3344455666677765543
No 4
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=7.09 E-value=1.2e+03 Score=20.56 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025128 5 VLVALGLSLVGGLSTSIGA 23 (257)
Q Consensus 5 ~~~~~~~~~~~~~~~~lG~ 23 (257)
.+.+++.++++++....+.
T Consensus 269 p~~A~iiG~iag~i~~~~~ 287 (399)
T 2b2h_A 269 VKGAIVIGLVAGIVCYLAM 287 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567777777777776665
No 5
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=6.16 E-value=4.2e+02 Score=14.47 Aligned_cols=20 Identities=25% Similarity=0.492 Sum_probs=10.5
Q ss_pred HHHhhhhHHHHHHHHHHHHH
Q 025128 60 AINSIGFLKGNLWFFSGVIF 79 (257)
Q Consensus 60 a~~~~~~~~~~~~~~~G~~~ 79 (257)
.++..+...+.+.|+.|++.
T Consensus 9 tLrigGLi~a~vLfi~gi~i 28 (31)
T 3n2f_G 9 TVRNGGLIFAALAFIVGLII 28 (31)
T ss_dssp HHHHHHTTTHHHHHHHHHHH
T ss_pred HHhhcchhHHHHHHHHHHHH
Confidence 33444444555666666544
No 6
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=5.99 E-value=5.7e+02 Score=15.86 Aligned_cols=15 Identities=20% Similarity=0.248 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 025128 67 LKGNLWFFSGVIFFA 81 (257)
Q Consensus 67 ~~~~~~~~~G~~~~~ 81 (257)
+....+.+.|.++..
T Consensus 10 WiIi~svl~GLLLL~ 24 (54)
T 2l8s_A 10 WVILLSAFAGLLLLM 24 (54)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555566654433
No 7
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=5.97 E-value=4.6e+02 Score=17.38 Aligned_cols=11 Identities=9% Similarity=0.293 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 025128 67 LKGNLWFFSGV 77 (257)
Q Consensus 67 ~~~~~~~~~G~ 77 (257)
..+.+.|++|+
T Consensus 25 ifA~vLfi~GI 35 (74)
T 2zxe_G 25 IVAAVLCVIGI 35 (74)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 33444444444
No 8
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=5.80 E-value=6.9e+02 Score=18.84 Aligned_cols=31 Identities=13% Similarity=0.054 Sum_probs=17.8
Q ss_pred HHHHHHHhhhHhhhhccChhHHHH-HHHHHHH
Q 025128 208 MAFLTLHEMLPLAFDYAGQKQAVK-AVFVGMA 238 (257)
Q Consensus 208 ~lyv~~~ellpe~~~~~~~~~~~~-~~~~G~~ 238 (257)
.-|+++.+-.||+....+..+.++ +.+++++
T Consensus 59 lYrisF~~t~ae~~~p~gewK~v~g~v~~~i~ 90 (147)
T 1v54_D 59 LYRLKFKESFAEMNRSTNEWKTVVGAAMFFIG 90 (147)
T ss_dssp HHHHHCSSCHHHHTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHhccccccccCCCCchhHHHHHHHHHHH
Confidence 457788888888766555444332 3333333
No 9
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=5.00 E-value=8e+02 Score=18.94 Aligned_cols=20 Identities=10% Similarity=-0.036 Sum_probs=12.3
Q ss_pred HHHHHHhhhHhhhhccChhH
Q 025128 209 AFLTLHEMLPLAFDYAGQKQ 228 (257)
Q Consensus 209 lyv~~~ellpe~~~~~~~~~ 228 (257)
-|+++.+-.||+.+..+..+
T Consensus 82 YriSF~qt~aE~~~ptgEWK 101 (169)
T 2y69_D 82 YRLKFKESFAEMNRSTNEWK 101 (169)
T ss_dssp HHHHCSSCHHHHTCCCSHHH
T ss_pred HHHHhccccccccCCCCchh
Confidence 45677777788765544433
No 10
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=4.64 E-value=5.8e+02 Score=14.32 Aligned_cols=7 Identities=29% Similarity=0.975 Sum_probs=4.4
Q ss_pred HHHHHHH
Q 025128 204 VGGVMAF 210 (257)
Q Consensus 204 aaG~~ly 210 (257)
-+|+|+|
T Consensus 23 lg~tfly 29 (40)
T 2l9u_A 23 LGGTFLY 29 (40)
T ss_dssp HHHHHHH
T ss_pred hCceeEE
Confidence 4566666
Done!