Query 025128
Match_columns 257
No_of_seqs 177 out of 1236
Neff 7.9
Searched_HMMs 13730
Date Mon Mar 25 04:17:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025128.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025128hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54d_ f.23.1.1 (D:) Mitochon 10.2 1.8E+02 0.013 20.3 4.5 41 208-248 56-97 (144)
2 d1ymga1 f.19.1.1 (A:6-239) Aqu 6.1 2.6E+02 0.019 20.4 4.2 23 231-253 39-61 (234)
3 d2e74e1 f.23.24.1 (E:1-32) Pet 4.6 2.4E+02 0.018 13.7 3.8 12 38-49 13-24 (32)
4 d1rc2a_ f.19.1.1 (A:) Aquapori 4.4 4.7E+02 0.034 18.6 4.8 16 231-246 39-54 (231)
5 d1vf5c3 f.23.23.1 (C:250-286) 3.8 3.3E+02 0.024 14.1 3.9 19 36-54 5-23 (37)
6 d2axtm1 f.23.35.1 (M:1-36) Pho 3.3 3.7E+02 0.027 13.7 2.2 13 49-61 9-21 (36)
7 d1iwga8 f.35.1.1 (A:513-566,A: 3.1 7.8E+02 0.057 17.2 5.7 37 15-51 164-201 (222)
8 d2axtk1 f.23.36.1 (K:10-46) Ph 2.8 1.2E+02 0.0085 15.9 -0.3 14 164-177 1-14 (37)
9 d2np5a2 a.121.1.1 (A:78-195) T 2.7 3.6E+02 0.026 17.0 2.2 19 129-147 72-90 (118)
10 d3d31c1 f.58.1.1 (C:13-260) Su 2.6 8.6E+02 0.063 16.8 5.8 29 161-191 150-178 (248)
No 1
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.18 E-value=1.8e+02 Score=20.27 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=23.6
Q ss_pred HHHHHHHhhhHhhhhccChhHHHH-HHHHHHHHHHHHHHHHH
Q 025128 208 MAFLTLHEMLPLAFDYAGQKQAVK-AVFVGMAFMSASLYFLE 248 (257)
Q Consensus 208 ~lyv~~~ellpe~~~~~~~~~~~~-~~~~G~~l~~~~l~~~~ 248 (257)
+-|+++.+-.||+.+..+..+.++ +.++|+++-.++..+.+
T Consensus 56 lYrisF~~t~ae~~~p~gewK~v~g~~~~~i~~s~~i~~~~r 97 (144)
T d1v54d_ 56 LYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEK 97 (144)
T ss_dssp HHHHHCSSCHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888999877655544433 34444444444444443
No 2
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.07 E-value=2.6e+02 Score=20.44 Aligned_cols=23 Identities=22% Similarity=0.093 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC
Q 025128 231 KAVFVGMAFMSASLYFLEISLPA 253 (257)
Q Consensus 231 ~~~~~G~~l~~~~l~~~~~~~~~ 253 (257)
.++..|+.++..+..+-+++-+|
T Consensus 39 ial~~G~~v~~~i~~~g~iSGaH 61 (234)
T d1ymga1 39 VALAFGLALATLVQAVGHISGAH 61 (234)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCCC
T ss_pred HHHHHHHHHHHHHHHHhccccCc
Confidence 45666666665555443344334
No 3
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.64 E-value=2.4e+02 Score=13.70 Aligned_cols=12 Identities=33% Similarity=0.775 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 025128 38 GLLQGFAAGLML 49 (257)
Q Consensus 38 ~~l~afaaGvml 49 (257)
++..+.|.|+..
T Consensus 13 alffgiavgiif 24 (32)
T d2e74e1 13 ALFFGIAVGIIF 24 (32)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhhee
Confidence 344444444443
No 4
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}
Probab=4.43 E-value=4.7e+02 Score=18.62 Aligned_cols=16 Identities=13% Similarity=0.314 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 025128 231 KAVFVGMAFMSASLYF 246 (257)
Q Consensus 231 ~~~~~G~~l~~~~l~~ 246 (257)
.++..|+.++..+..+
T Consensus 39 ia~~~Gl~v~~~i~~~ 54 (231)
T d1rc2a_ 39 VALAFGLTVLTMAFAV 54 (231)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4666666666554433
No 5
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.81 E-value=3.3e+02 Score=14.12 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025128 36 VLGLLQGFAAGLMLSISFL 54 (257)
Q Consensus 36 ~l~~l~afaaGvml~~~~~ 54 (257)
....+++|.+.++++=.++
T Consensus 5 Rv~gl~~F~~~v~laQi~l 23 (37)
T d1vf5c3 5 RVKWMIAFICLVMLAQLML 23 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455566666666665544
No 6
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.26 E-value=3.7e+02 Score=13.74 Aligned_cols=13 Identities=8% Similarity=0.271 Sum_probs=7.8
Q ss_pred HHHHHHHhhHHHH
Q 025128 49 LSISFLDLAHNAI 61 (257)
Q Consensus 49 l~~~~~~llpea~ 61 (257)
++.+++-++|.++
T Consensus 9 iAt~LFilvPt~F 21 (36)
T d2axtm1 9 IATALFVLVPSVF 21 (36)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4556666777543
No 7
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=3.13 E-value=7.8e+02 Score=17.24 Aligned_cols=37 Identities=14% Similarity=0.224 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHH
Q 025128 15 GGLSTSIGALFVVLNEAP-NLKVLGLLQGFAAGLMLSI 51 (257)
Q Consensus 15 ~~~~~~lG~~~~~~~~~~-~~~~l~~l~afaaGvml~~ 51 (257)
+.+++.+|-++..+.+.. .+-+.++....+.|++.+.
T Consensus 164 t~ltti~gf~pl~~~~~~g~~~~~~la~~v~~Gll~s~ 201 (222)
T d1iwga8 164 TSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTAT 201 (222)
T ss_dssp HHHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 334444444333332222 3334445555555555543
No 8
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.84 E-value=1.2e+02 Score=15.91 Aligned_cols=14 Identities=29% Similarity=0.410 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHHHh
Q 025128 164 NIPEGVAVALPVYF 177 (257)
Q Consensus 164 ~ipeg~a~~~~l~~ 177 (257)
|+||+.+.+.++.+
T Consensus 1 kLPeay~~f~Pivd 14 (37)
T d2axtk1 1 KLPEAYAIFDPLVD 14 (37)
T ss_dssp CCCGGGGGCHHHHH
T ss_pred CcchhhhhhchHHH
Confidence 45677666666654
No 9
>d2np5a2 a.121.1.1 (A:78-195) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=2.72 E-value=3.6e+02 Score=16.98 Aligned_cols=19 Identities=16% Similarity=-0.024 Sum_probs=14.7
Q ss_pred HHHHhhhhhHHHHHHHhhc
Q 025128 129 VGISLHNFPEGMAVFLGSM 147 (257)
Q Consensus 129 lal~lHs~~eGlaiG~a~~ 147 (257)
.+..+|++.||+.+-+...
T Consensus 72 ~A~~L~aliDGL~~~~l~~ 90 (118)
T d2np5a2 72 RAALLLATVDGLALDAIGS 90 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhHHHHHhcC
Confidence 4556799999999987654
No 10
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=2.64 E-value=8.6e+02 Score=16.75 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=17.8
Q ss_pred HHhhhHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 025128 161 ALHNIPEGVAVALPVYFATQSKWQAFKLATL 191 (257)
Q Consensus 161 ~lH~ipeg~a~~~~l~~~g~s~~~~~~~~~~ 191 (257)
.+.++|+++-.++... |.+++|.+....+
T Consensus 150 ~l~~i~~~~~eAA~~l--Gas~~~~~~~I~l 178 (248)
T d3d31c1 150 GFKSVDPRLENAARSL--GAPLWKAFFFVTL 178 (248)
T ss_dssp HHHHSCHHHHHHHHHT--TCCHHHHHHHTHH
T ss_pred HHHhcchhHHHHHHhh--hccchhHHHHHHH
Confidence 4556777766655553 6677777665443
Done!