Query 025129
Match_columns 257
No_of_seqs 126 out of 626
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 04:18:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025129.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025129hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p0t_A Uncharacterized protein 80.5 2.1 7.3E-05 33.5 4.8 41 187-227 24-65 (138)
2 3ksv_A Uncharacterized protein 78.7 2.2 7.5E-05 34.4 4.4 41 187-227 30-71 (149)
3 3o0m_A HIT family protein; ssg 76.4 4.2 0.00014 32.4 5.5 41 187-227 24-65 (149)
4 3lb5_A HIT-like protein involv 75.3 4.4 0.00015 33.0 5.4 40 187-226 47-87 (161)
5 1fit_A FragIle histidine prote 75.2 3.6 0.00012 32.5 4.7 41 187-227 18-59 (147)
6 3imi_A HIT family protein; str 75.1 3.9 0.00013 32.5 4.9 41 187-227 28-69 (147)
7 2eo4_A 150AA long hypothetical 74.7 3.8 0.00013 32.5 4.7 41 187-227 18-59 (149)
8 3l7x_A SMU.412C, putative HIT- 72.7 3.9 0.00013 33.8 4.5 41 187-227 55-96 (173)
9 2oik_A Histidine triad (HIT) p 71.7 5.2 0.00018 31.9 4.9 40 187-226 25-65 (154)
10 1y23_A HIT, histidine triad pr 71.5 3.3 0.00011 32.5 3.7 40 187-226 24-64 (145)
11 3n1s_A HIT-like protein HINT; 70.8 4 0.00014 31.3 3.9 35 187-221 22-57 (119)
12 3r6f_A HIT family protein; str 69.1 2.2 7.4E-05 33.5 2.0 37 187-223 23-60 (135)
13 4egu_A Histidine triad (HIT) p 67.1 3.5 0.00012 31.4 2.8 36 187-222 23-59 (119)
14 3oj7_A Putative histidine tria 66.3 4.6 0.00016 30.7 3.3 36 187-222 26-62 (117)
15 3o1c_A Histidine triad nucleot 60.9 6 0.0002 30.6 3.1 36 187-222 34-70 (126)
16 3ano_A AP-4-A phosphorylase; d 56.5 13 0.00043 32.0 4.7 40 187-226 89-129 (218)
17 1xqu_A HIT family hydrolase; p 54.9 6.8 0.00023 31.5 2.6 36 187-222 54-90 (147)
18 1ems_A Nitfhit, NIT-fragIle hi 44.3 23 0.00079 32.7 4.7 41 187-227 314-355 (440)
19 1gup_A Galactose-1-phosphate u 38.6 31 0.0011 31.3 4.6 39 187-225 215-254 (348)
20 3i24_A HIT family hydrolase; s 32.6 47 0.0016 26.6 4.2 39 188-226 19-58 (149)
21 3ohe_A Histidine triad (HIT) p 32.1 56 0.0019 25.6 4.6 39 188-226 19-58 (137)
22 2gww_B IPAA; protein complex, 28.4 27 0.00092 20.6 1.5 15 134-148 9-23 (30)
23 2rdd_B UPF0092 membrane protei 27.8 33 0.0011 21.2 2.0 18 56-73 2-19 (37)
24 1q90_G Cytochrome B6F complex 25.5 72 0.0024 20.1 3.2 22 94-115 6-27 (37)
25 3i4s_A Histidine triad protein 23.8 88 0.003 24.9 4.4 36 191-227 27-64 (149)
26 1z84_A Galactose-1-phosphate u 23.6 84 0.0029 28.5 4.7 38 187-224 230-268 (351)
27 3arc_L Photosystem II reaction 22.4 90 0.0031 19.6 3.2 21 96-116 16-36 (37)
No 1
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}
Probab=80.55 E-value=2.1 Score=33.53 Aligned_cols=41 Identities=12% Similarity=0.201 Sum_probs=34.6
Q ss_pred CCCeEEEEecCCCCCCceEEEEecCCeecC-CCCHHHHHHHH
Q 025129 187 DEELCSVFVPTNHLYIGDIFLVSSKEIIRP-NLSIREGIEII 227 (257)
Q Consensus 187 ~~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvEeAmk~i 227 (257)
.++.+.+|++-.|.+-|.++++|++.+..+ |++.|+...+.
T Consensus 24 e~~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~ 65 (138)
T 3p0t_A 24 EDDDVVAFLTIEPMTQGHTLVVPREEIDNWQDVDSAAFNRVM 65 (138)
T ss_dssp ECSSEEEEECSSCSSTTCEEEEESSCCCCGGGSCHHHHHHHH
T ss_pred eCCCEEEEecCCCCCCcEEEEEEhHHhCchhhCCHHHHHHHH
Confidence 367889999999988999999999998776 99988876553
No 2
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0
Probab=78.66 E-value=2.2 Score=34.36 Aligned_cols=41 Identities=12% Similarity=0.263 Sum_probs=34.9
Q ss_pred CCCeEEEEecCCCCCCceEEEEecCCeecC-CCCHHHHHHHH
Q 025129 187 DEELCSVFVPTNHLYIGDIFLVSSKEIIRP-NLSIREGIEII 227 (257)
Q Consensus 187 ~~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvEeAmk~i 227 (257)
+++.+.+|+|-.|..-|.++++|++.+..+ |++-||...+.
T Consensus 30 ed~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~ 71 (149)
T 3ksv_A 30 ETSKALAFMDINPLSRGHMLVIPKEHASCLHELGMEDAADVG 71 (149)
T ss_dssp ECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHH
T ss_pred ECCCEEEEECCCCCCCCEEEEEeChhhhhhhhCCHHHHHHHH
Confidence 468889999999988999999999999766 99988866554
No 3
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str}
Probab=76.40 E-value=4.2 Score=32.39 Aligned_cols=41 Identities=5% Similarity=0.069 Sum_probs=34.4
Q ss_pred CCCeEEEEecCCCCCCceEEEEecCCeecC-CCCHHHHHHHH
Q 025129 187 DEELCSVFVPTNHLYIGDIFLVSSKEIIRP-NLSIREGIEII 227 (257)
Q Consensus 187 ~~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvEeAmk~i 227 (257)
.++.+.+|+|-.|.+-|.++++|++.+..+ |++.|+...+.
T Consensus 24 e~~~~~af~d~~p~~pgh~lViPk~H~~~l~dl~~~~~~~l~ 65 (149)
T 3o0m_A 24 EDENFLGILDIRPFTRGHTLVIPKTHTVDLTDTPPETVAGMA 65 (149)
T ss_dssp ECSSEEEEECSSCSSTTCEEEEESSCCCSTTTSCHHHHHHHH
T ss_pred ECCCEEEEEcCCCCCCCeEEEEechhhCCHhHCCHHHHHHHH
Confidence 367889999999988999999999999776 99988765543
No 4
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae}
Probab=75.30 E-value=4.4 Score=33.00 Aligned_cols=40 Identities=8% Similarity=0.089 Sum_probs=34.1
Q ss_pred CCCeEEEEecCCCCCCceEEEEecCCeecC-CCCHHHHHHH
Q 025129 187 DEELCSVFVPTNHLYIGDIFLVSSKEIIRP-NLSIREGIEI 226 (257)
Q Consensus 187 ~~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvEeAmk~ 226 (257)
.++.+.+|+|-.|.+-|.++++|++.+..+ |++.|+...+
T Consensus 47 e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~ee~~~l 87 (161)
T 3lb5_A 47 EDDDVIAFMDIMPQAPGHTLVIPKKGSRNLLDADTETLFPV 87 (161)
T ss_dssp ECSSEEEEECSSCSSTTCEEEEESSCCSSTTTSCHHHHHHH
T ss_pred ECCCEEEEECCCcCCCcEEEEEEeeccchhhhCCHHHHHHH
Confidence 367889999999988899999999999776 9999886644
No 5
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A*
Probab=75.18 E-value=3.6 Score=32.52 Aligned_cols=41 Identities=17% Similarity=0.264 Sum_probs=34.9
Q ss_pred CCCeEEEEecCCCCCCceEEEEecCCeecC-CCCHHHHHHHH
Q 025129 187 DEELCSVFVPTNHLYIGDIFLVSSKEIIRP-NLSIREGIEII 227 (257)
Q Consensus 187 ~~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvEeAmk~i 227 (257)
.++.+.+|++-.|..-|.++++|++.+..+ |++.||...+.
T Consensus 18 e~~~~~a~~d~~p~~pgh~LViPk~h~~~~~dL~~~e~~~l~ 59 (147)
T 1fit_A 18 KTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLF 59 (147)
T ss_dssp ECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHH
T ss_pred ECCCEEEEECCCCCCCcEEEEEEccccCChhhCCHHHHHHHH
Confidence 467899999999988999999999999776 99988865544
No 6
>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} SCOP: d.13.1.1
Probab=75.07 E-value=3.9 Score=32.49 Aligned_cols=41 Identities=12% Similarity=0.185 Sum_probs=34.4
Q ss_pred CCCeEEEEecCCCCCCceEEEEecCCeecC-CCCHHHHHHHH
Q 025129 187 DEELCSVFVPTNHLYIGDIFLVSSKEIIRP-NLSIREGIEII 227 (257)
Q Consensus 187 ~~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvEeAmk~i 227 (257)
.++...+|+|-.|.+-|.++++|++.+..+ |++.||...+.
T Consensus 28 e~~~~~a~~d~~p~~pgh~lViPk~H~~~l~dL~~~e~~~l~ 69 (147)
T 3imi_A 28 EDEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTPEIASHIF 69 (147)
T ss_dssp ECSSEEEEECTTCSSTTCEEEEESSCCCSGGGCCHHHHHHHH
T ss_pred ECCCEEEEEcCCCCCCcEEEEEEeeccCChhhCCHHHHHHHH
Confidence 367889999999988999999999999776 99998865443
No 7
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii}
Probab=74.65 E-value=3.8 Score=32.48 Aligned_cols=41 Identities=10% Similarity=0.165 Sum_probs=34.7
Q ss_pred CCCeEEEEecCCCCCCceEEEEecCCeecC-CCCHHHHHHHH
Q 025129 187 DEELCSVFVPTNHLYIGDIFLVSSKEIIRP-NLSIREGIEII 227 (257)
Q Consensus 187 ~~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvEeAmk~i 227 (257)
.++.+.+|+|-.|..-|.++++|++.+..+ |++.||...+.
T Consensus 18 e~~~~~a~~d~~p~~pgh~lViPk~H~~~~~dL~~~e~~~l~ 59 (149)
T 2eo4_A 18 EDEKFAAILDKYPVSLGHTLVIPKKHFENYLEADEDTLAELA 59 (149)
T ss_dssp ECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHH
T ss_pred ECCCEEEEECCCCCCCCeEEEEechhhCCHhHCCHHHHHHHH
Confidence 367889999999988899999999999776 99988876554
No 8
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans}
Probab=72.71 E-value=3.9 Score=33.85 Aligned_cols=41 Identities=7% Similarity=0.272 Sum_probs=34.3
Q ss_pred CCCeEEEEecCCCCCCceEEEEecCCeecC-CCCHHHHHHHH
Q 025129 187 DEELCSVFVPTNHLYIGDIFLVSSKEIIRP-NLSIREGIEII 227 (257)
Q Consensus 187 ~~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvEeAmk~i 227 (257)
.++.+.+|+|-.|..-|.++++|++.+..+ |++.|+...+.
T Consensus 55 e~e~~~afld~~P~~pgH~LVIPkrHv~~l~dL~~ee~~~L~ 96 (173)
T 3l7x_A 55 EDEDVLAFLDISQATKGHTLVIPKEHVRNALEMTQTQAANLF 96 (173)
T ss_dssp ECSSEEEEECTTCSSTTCEEEEESSCCSCGGGCCHHHHHHHH
T ss_pred ECCCEEEEEcCCCCCCcEEEEEeccccCChhhCCHHHHHHHH
Confidence 467889999999988999999999998766 99988865543
No 9
>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1
Probab=71.70 E-value=5.2 Score=31.91 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=33.8
Q ss_pred CCCeEEEEecCCCCCCceEEEEecCCeecC-CCCHHHHHHH
Q 025129 187 DEELCSVFVPTNHLYIGDIFLVSSKEIIRP-NLSIREGIEI 226 (257)
Q Consensus 187 ~~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvEeAmk~ 226 (257)
.++.+.+|+|-.|..-|.++++|++.+..+ |++.||...+
T Consensus 25 e~~~~~a~~d~~p~~pgh~LViPk~H~~~l~dL~~~~~~~l 65 (154)
T 2oik_A 25 QDALCRVVHVENQDYPGFCRVILNRHVKEMSDLRPAERDHL 65 (154)
T ss_dssp ECSSEEEEECCCTTCTTCEEEEESSCCSCGGGSCHHHHHHH
T ss_pred ECCcEEEEEcCCCCCCeEEEEEecCCcCChHHCCHHHHHHH
Confidence 367889999999988999999999999776 9998886443
No 10
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1
Probab=71.54 E-value=3.3 Score=32.48 Aligned_cols=40 Identities=10% Similarity=0.204 Sum_probs=33.6
Q ss_pred CCCeEEEEecCCCCCCceEEEEecCCeecC-CCCHHHHHHH
Q 025129 187 DEELCSVFVPTNHLYIGDIFLVSSKEIIRP-NLSIREGIEI 226 (257)
Q Consensus 187 ~~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvEeAmk~ 226 (257)
.++.+.+|+|-.|..-|.++++|++.+..+ |++.+|...+
T Consensus 24 e~~~~~a~~~~~p~~pgh~LViPk~h~~~l~dL~~~~~~~l 64 (145)
T 1y23_A 24 EDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQY 64 (145)
T ss_dssp ECSSEEEEECTTCSSTTCEEEEESSCCSSGGGCCHHHHHTT
T ss_pred ECCCEEEEECCCCCCCCeEEEEEhhhhhhHHhCCHHHHHHH
Confidence 367889999999988899999999999776 8998886543
No 11
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A*
Probab=70.81 E-value=4 Score=31.30 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=30.6
Q ss_pred CCCeEEEEecCCCCCCceEEEEecCCeecC-CCCHH
Q 025129 187 DEELCSVFVPTNHLYIGDIFLVSSKEIIRP-NLSIR 221 (257)
Q Consensus 187 ~~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvE 221 (257)
.++.+.+|.+-.|..-|.++++|++.+..+ |++.|
T Consensus 22 ede~~~af~d~~P~~pgH~LViPk~Hv~~l~dL~~~ 57 (119)
T 3n1s_A 22 QDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAE 57 (119)
T ss_dssp ECSSEEEEECSSCSSSEEEEEEESSCCCSGGGCCGG
T ss_pred ECCCEEEEECCCCCCCCeEEEEehhHhCCHhHcCHH
Confidence 367889999999988999999999999776 88887
No 12
>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi}
Probab=69.07 E-value=2.2 Score=33.53 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=31.9
Q ss_pred CCCeEEEEecCCCCCCceEEEEecCCeecC-CCCHHHH
Q 025129 187 DEELCSVFVPTNHLYIGDIFLVSSKEIIRP-NLSIREG 223 (257)
Q Consensus 187 ~~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvEeA 223 (257)
.++.+.+|+|-.|.+-|.++++|++.+..+ |++.||.
T Consensus 23 e~~~~~af~d~~p~~pgh~lViPk~H~~~l~dL~~~~~ 60 (135)
T 3r6f_A 23 ETDRLFALIDRYPLSKGHFLVIPKAHHPYLHNYKPEEL 60 (135)
T ss_dssp ECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCGGGG
T ss_pred ECCCEEEEECCCCCCCCeEEEEEhhHhCCHhHCCHHHH
Confidence 468889999999988999999999998765 8887764
No 13
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile}
Probab=67.12 E-value=3.5 Score=31.37 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=30.5
Q ss_pred CCCeEEEEecCCCCCCceEEEEecCCeecC-CCCHHH
Q 025129 187 DEELCSVFVPTNHLYIGDIFLVSSKEIIRP-NLSIRE 222 (257)
Q Consensus 187 ~~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvEe 222 (257)
.++.+.+|+|-.|.+-|.++++|++.+..+ |++.||
T Consensus 23 e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e 59 (119)
T 4egu_A 23 EDDRVLAFNDLNPVAPYHILVVPKKHYDSLIDIPDKE 59 (119)
T ss_dssp ECSSEEEEECSSCSSSEEEEEEESSCCSSGGGSCGGG
T ss_pred ECCCEEEEECCCCCCCceEEEEechhhCCHhHCCHhH
Confidence 367889999999988999999999998766 888663
No 14
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A*
Probab=66.30 E-value=4.6 Score=30.65 Aligned_cols=36 Identities=11% Similarity=0.186 Sum_probs=30.0
Q ss_pred CCCeEEEEecCCCCCCceEEEEecCCeecC-CCCHHH
Q 025129 187 DEELCSVFVPTNHLYIGDIFLVSSKEIIRP-NLSIRE 222 (257)
Q Consensus 187 ~~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvEe 222 (257)
.++...+|+|-.|..-|.++++|++.+..+ |++.||
T Consensus 26 e~~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e 62 (117)
T 3oj7_A 26 EDDEIFAFKDINPIAPIHILVIPKQHIASLNEITEEN 62 (117)
T ss_dssp ECSSEEEEECSSCSSSEEEEEEESSCCCSGGGCCTTT
T ss_pred ECCcEEEEECCCCCCCceEEEEechHhCCHHHCCHHH
Confidence 367889999999988999999999998766 777553
No 15
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A
Probab=60.89 E-value=6 Score=30.56 Aligned_cols=36 Identities=8% Similarity=0.109 Sum_probs=30.7
Q ss_pred CCCeEEEEecCCCCCCceEEEEecCCeecC-CCCHHH
Q 025129 187 DEELCSVFVPTNHLYIGDIFLVSSKEIIRP-NLSIRE 222 (257)
Q Consensus 187 ~~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvEe 222 (257)
.++.+.+|.+-.|..-|.++++|++.+..+ |++.||
T Consensus 34 e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e 70 (126)
T 3o1c_A 34 EDDQALAFHDISPQAPTHFLVIPKKHISQISAAEDAD 70 (126)
T ss_dssp ECSSEEEEECSSCSSSEEEEEEESSCCCCGGGCCGGG
T ss_pred ECCCEEEEECCCCCCCceEEEEechHhchHhhCchhH
Confidence 467889999999988999999999999776 787665
No 16
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis}
Probab=56.47 E-value=13 Score=32.04 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=33.5
Q ss_pred CCCeEEEEecCCCCCCceEEEEecCCeecC-CCCHHHHHHH
Q 025129 187 DEELCSVFVPTNHLYIGDIFLVSSKEIIRP-NLSIREGIEI 226 (257)
Q Consensus 187 ~~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvEeAmk~ 226 (257)
.++.+.+|++-.|-.-|.++++|++.+..+ |++.||...+
T Consensus 89 edd~~~afld~~P~~pGH~LVIPkrHv~~l~dL~~ee~~~L 129 (218)
T 3ano_A 89 RGKLVYAVLNLYPYNPGHLMVVPYRRVSELEDLTDLESAEL 129 (218)
T ss_dssp ECSSEEEEECSSCSSTTCEEEEESSCCCCGGGSCHHHHHHH
T ss_pred ECCcEEEEEccCCCCCcEEEEEechhhCChhhCCHHHHHHH
Confidence 468889999988878999999999998776 9998875443
No 17
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1
Probab=54.85 E-value=6.8 Score=31.45 Aligned_cols=36 Identities=8% Similarity=0.135 Sum_probs=30.0
Q ss_pred CCCeEEEEecCCCCCCceEEEEecCCeecC-CCCHHH
Q 025129 187 DEELCSVFVPTNHLYIGDIFLVSSKEIIRP-NLSIRE 222 (257)
Q Consensus 187 ~~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvEe 222 (257)
.++.+.+|+|-.|..-|.++++|++.+..+ |++.||
T Consensus 54 e~e~~~af~d~~P~~pgH~LViPkrHv~~l~dL~~~e 90 (147)
T 1xqu_A 54 EDERVIAIKDINPAAPVHVLIIPKEHIANVKEINESN 90 (147)
T ss_dssp ECSSEEEEECSSCSSSEEEEEEESSCCSSGGGCCTTT
T ss_pred ECCcEEEEEecCCCCccEEEEEeCcccCChhHCCHHH
Confidence 467889999999988999999999998776 776543
No 18
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=44.35 E-value=23 Score=32.65 Aligned_cols=41 Identities=17% Similarity=0.256 Sum_probs=34.8
Q ss_pred CCCeEEEEecCCCCCCceEEEEecCCeecC-CCCHHHHHHHH
Q 025129 187 DEELCSVFVPTNHLYIGDIFLVSSKEIIRP-NLSIREGIEII 227 (257)
Q Consensus 187 ~~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvEeAmk~i 227 (257)
.++.+.+|+|-.|..-|.++++|++.+..+ |++.+|...+.
T Consensus 314 e~~~~~a~~~~~p~~pgh~lviPk~h~~~~~~l~~~~~~~l~ 355 (440)
T 1ems_A 314 STPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLF 355 (440)
T ss_dssp ECSSEEEEECSSCSSTTCEEEEESSCCSCGGGSCHHHHHHHH
T ss_pred ECCCEEEEEcCCcCCCCeEEEEEccccCChhHCCHHHHHHHH
Confidence 467899999999988999999999999776 99988865544
No 19
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Probab=38.64 E-value=31 Score=31.25 Aligned_cols=39 Identities=15% Similarity=0.211 Sum_probs=32.9
Q ss_pred CCCeEEEEecCCCCCCceEEEEecCCeecC-CCCHHHHHH
Q 025129 187 DEELCSVFVPTNHLYIGDIFLVSSKEIIRP-NLSIREGIE 225 (257)
Q Consensus 187 ~~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvEeAmk 225 (257)
.++.+.+|+|-.|..-|-++++|++.+..+ |++-||...
T Consensus 215 E~e~~~af~~~~p~~pgh~lViPK~Hv~~l~dL~~~e~~~ 254 (348)
T 1gup_A 215 ETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSD 254 (348)
T ss_dssp ECSSEEEECCTTCCSTTCEEEEESSCCSSGGGCCHHHHHH
T ss_pred eCCcEEEEEccCCCCceEEEEEeCcccCChHHCCHHHHHH
Confidence 467889999999988899999999999776 888887543
No 20
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}
Probab=32.65 E-value=47 Score=26.57 Aligned_cols=39 Identities=15% Similarity=0.201 Sum_probs=28.4
Q ss_pred CCeEEEEecCCCCCCceEEEEecCCeecC-CCCHHHHHHH
Q 025129 188 EELCSVFVPTNHLYIGDIFLVSSKEIIRP-NLSIREGIEI 226 (257)
Q Consensus 188 ~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvEeAmk~ 226 (257)
.+...||+=-.|.+-|.++++|++.+..+ |++.||+..+
T Consensus 19 ~~~~~v~L~~~p~~pGh~LV~pk~Hv~~l~dL~~e~~~~l 58 (149)
T 3i24_A 19 LPLCKVLLIKEDIGPWLILVPRIEELKEIHHMTDEQQIQF 58 (149)
T ss_dssp CSSEEEEEECBSSTTEEEEEESCTTCSSGGGSCHHHHHHH
T ss_pred CCCEEEEEcCCCCCCEEEEEeCccccCChhHCCHHHHHHH
Confidence 45566676666766688888887788776 9999987544
No 21
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Probab=32.07 E-value=56 Score=25.55 Aligned_cols=39 Identities=15% Similarity=0.232 Sum_probs=28.9
Q ss_pred CCeEEEEecCCCCCCceEEEEecCCeecC-CCCHHHHHHH
Q 025129 188 EELCSVFVPTNHLYIGDIFLVSSKEIIRP-NLSIREGIEI 226 (257)
Q Consensus 188 ~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvEeAmk~ 226 (257)
.+...||+=-.|.+-|.++++|++.+..+ |++.||+..+
T Consensus 19 ~~~~~v~l~~~p~~pGh~lV~~k~h~~~l~dl~~~~~~~l 58 (137)
T 3ohe_A 19 SRLCDVLLMNDNTWPWVILVPRVSGIREIYELPNEQQQRL 58 (137)
T ss_dssp CSSEEEEEESCTTSCEEEEEESCTTCCSGGGSCHHHHHHH
T ss_pred CCcEEEEEcCCCCCCEEEEEecccccCChHHCCHHHHHHH
Confidence 45566666666766799888887888776 9999986544
No 22
>2gww_B IPAA; protein complex, cell adhesion, structural protein; 2.72A {Shigella flexneri}
Probab=28.38 E-value=27 Score=20.60 Aligned_cols=15 Identities=27% Similarity=0.691 Sum_probs=12.9
Q ss_pred hhhHHHHHHHHHHhC
Q 025129 134 RHLYSASKQISAAIS 148 (257)
Q Consensus 134 ksIY~siKq~~~~f~ 148 (257)
+.||++.||++.+++
T Consensus 9 nniykaakdvttsls 23 (30)
T 2gww_B 9 NNIYKAAKDVTTSLS 23 (30)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 468999999999875
No 23
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=27.75 E-value=33 Score=21.19 Aligned_cols=18 Identities=11% Similarity=0.218 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 025129 56 GCVVLFPVAVTFFITWWF 73 (257)
Q Consensus 56 GLlvlLPl~lTi~vl~wl 73 (257)
|+..++|+++.+.++||+
T Consensus 2 ~~~~~l~~v~~~~ifYFl 19 (37)
T 2rdd_B 2 PMSLILMLVVFGLIFYFM 19 (37)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 455677777766666654
No 24
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=25.54 E-value=72 Score=20.12 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh
Q 025129 94 GLGFITSLVFVFLVGVFVSSWL 115 (257)
Q Consensus 94 glgll~~llli~liG~la~~~i 115 (257)
..|+++.++-+.++|+++..|.
T Consensus 6 L~GIVlGlipvtlaGLfv~Ay~ 27 (37)
T 1q90_G 6 LCGIVLGLVPVTIAGLFVTAYL 27 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHhhHHHHHHHHHHHHHH
Confidence 3578888888999999887654
No 25
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum}
Probab=23.77 E-value=88 Score=24.92 Aligned_cols=36 Identities=14% Similarity=0.245 Sum_probs=24.6
Q ss_pred EEEEecCCCCCCceEEEEecC-CeecC-CCCHHHHHHHH
Q 025129 191 CSVFVPTNHLYIGDIFLVSSK-EIIRP-NLSIREGIEII 227 (257)
Q Consensus 191 v~VfvPtsPptsG~l~~Vp~~-~V~~l-DmsvEeAmk~i 227 (257)
..||+ ..|++-|.+++||++ .+..+ |++.|++..+.
T Consensus 27 ~~v~l-~~~~~~~H~LVIPk~~H~~~l~dL~~e~~~~l~ 64 (149)
T 3i4s_A 27 SKVLV-IKDANYPWLLLVPRRPDAVEIIDLDEVQQAQLM 64 (149)
T ss_dssp EEEEE-ESCTTSCEEEEEECCTTCCSGGGSCHHHHHHHH
T ss_pred eEEEE-CCCCCCCEEEEEecccccCChhHCCHHHHHHHH
Confidence 34444 244555678899999 58776 99999875543
No 26
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*
Probab=23.57 E-value=84 Score=28.53 Aligned_cols=38 Identities=11% Similarity=0.152 Sum_probs=31.8
Q ss_pred CCCeEEEEecCCCCCCceEEEEecCCeecC-CCCHHHHH
Q 025129 187 DEELCSVFVPTNHLYIGDIFLVSSKEIIRP-NLSIREGI 224 (257)
Q Consensus 187 ~~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvEeAm 224 (257)
.++.+.+|+|-.|..-|-++++|++.+..+ |++-||.-
T Consensus 230 E~e~~~af~~~~p~~P~h~lViPk~Hv~~l~dl~~~e~~ 268 (351)
T 1z84_A 230 ESSHFVSVAPFAATYPFEIWIIPKDHSSHFHHLDDVKAV 268 (351)
T ss_dssp ECSSEEEEECTTCSSTTCEEEEESSCCSCGGGCCHHHHH
T ss_pred cCCcEEEEeccCCCCCeEEEEEeccccCChHHCCHHHHH
Confidence 468899999999987789999999999776 88877643
No 27
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=22.43 E-value=90 Score=19.58 Aligned_cols=21 Identities=14% Similarity=0.429 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 025129 96 GFITSLVFVFLVGVFVSSWLG 116 (257)
Q Consensus 96 gll~~llli~liG~la~~~ig 116 (257)
++-..+++||++|++.++|+.
T Consensus 16 SLy~GLLlifvlavlFssyff 36 (37)
T 3arc_L 16 SLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhcc
Confidence 444566788999999888753
Done!