Query 025129
Match_columns 257
No_of_seqs 126 out of 626
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 04:19:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025129.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025129hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1y23a_ d.13.1.1 (A:) Hit {Bac 77.9 1.1 7.8E-05 33.3 4.2 38 187-224 20-58 (139)
2 d1fita_ d.13.1.1 (A:) FHIT (fr 75.1 1.7 0.00012 32.8 4.7 42 187-228 17-59 (146)
3 d2oika1 d.13.1.1 (A:6-144) His 67.4 3.5 0.00025 30.5 4.9 41 188-228 20-61 (139)
4 d1emsa1 d.13.1.1 (A:281-440) N 63.0 4 0.00029 31.3 4.6 40 187-226 34-74 (160)
5 d1guqa2 d.13.1.2 (A:178-348) G 59.4 4.9 0.00036 30.5 4.5 38 187-224 38-76 (171)
6 d1xqua_ d.13.1.1 (A:) Putative 53.7 2.7 0.0002 30.1 1.8 34 187-220 21-55 (113)
7 d1z84a2 d.13.1.2 (A:196-351) G 49.3 9.9 0.00072 28.4 4.7 39 187-225 35-74 (156)
8 d1kpfa_ d.13.1.1 (A:) Protein 46.4 7 0.00051 27.7 3.2 36 187-222 19-55 (111)
9 d2axtl1 f.23.31.1 (L:1-37) Pho 26.8 32 0.0023 20.1 3.2 21 96-116 16-36 (37)
10 d1q90g_ f.23.26.1 (G:) PetG su 26.5 35 0.0025 19.0 3.2 21 95-115 7-27 (30)
No 1
>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]}
Probab=77.91 E-value=1.1 Score=33.30 Aligned_cols=38 Identities=11% Similarity=0.205 Sum_probs=33.2
Q ss_pred CCCeEEEEecCCCCCCceEEEEecCCeecC-CCCHHHHH
Q 025129 187 DEELCSVFVPTNHLYIGDIFLVSSKEIIRP-NLSIREGI 224 (257)
Q Consensus 187 ~~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvEeAm 224 (257)
.++++.+|++..|.+-|.++++|++.+..+ |++.|+..
T Consensus 20 ede~~~af~d~~P~~~GH~LViPk~H~~~~~dL~~~~~~ 58 (139)
T d1y23a_ 20 EDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAK 58 (139)
T ss_dssp ECSSEEEEECTTCSSTTCEEEEESSCCSSGGGCCHHHHH
T ss_pred ECCCEEEEecCCCCCCcEEEEEEecccccccccchHHHH
Confidence 367899999999988999999999999886 89988764
No 2
>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein) {Human (Homo sapiens) [TaxId: 9606]}
Probab=75.12 E-value=1.7 Score=32.82 Aligned_cols=42 Identities=17% Similarity=0.246 Sum_probs=35.5
Q ss_pred CCCeEEEEecCCCCCCceEEEEecCCeecC-CCCHHHHHHHHh
Q 025129 187 DEELCSVFVPTNHLYIGDIFLVSSKEIIRP-NLSIREGIEIIV 228 (257)
Q Consensus 187 ~~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvEeAmk~ii 228 (257)
.++.+.+|++..|.+-|.++++|++.+..+ |++.||+..+.-
T Consensus 17 e~e~~~afld~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~ 59 (146)
T d1fita_ 17 KTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQ 59 (146)
T ss_dssp ECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHH
T ss_pred ECCCEEEEECCCCCCCcEEEEEecceehHHHHhhHHHHHHHHH
Confidence 478899999999988999999999999876 999887665443
No 3
>d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506 {Methylobacillus flagellatus [TaxId: 405]}
Probab=67.45 E-value=3.5 Score=30.47 Aligned_cols=41 Identities=20% Similarity=0.298 Sum_probs=34.2
Q ss_pred CCeEEEEecCCCCCCceEEEEecCCeecC-CCCHHHHHHHHh
Q 025129 188 EELCSVFVPTNHLYIGDIFLVSSKEIIRP-NLSIREGIEIIV 228 (257)
Q Consensus 188 ~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvEeAmk~ii 228 (257)
++.+.||+.--|.+-|.++++|++.+..+ |++-+|...+.-
T Consensus 20 ~~~~~v~l~~~p~~pGh~Lvipk~H~~~l~dL~~~e~~~l~~ 61 (139)
T d2oika1 20 DALCRVVHVENQDYPGFCRVILNRHVKEMSDLRPAERDHLML 61 (139)
T ss_dssp CSSEEEEECCCTTCTTCEEEEESSCCSCGGGSCHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCCcEEEEecccccchhhhccHHHHHHHHH
Confidence 57788999887767799999999999777 999998776643
No 4
>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=63.05 E-value=4 Score=31.26 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=34.4
Q ss_pred CCCeEEEEecCCCCCCceEEEEecCCeecC-CCCHHHHHHH
Q 025129 187 DEELCSVFVPTNHLYIGDIFLVSSKEIIRP-NLSIREGIEI 226 (257)
Q Consensus 187 ~~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvEeAmk~ 226 (257)
.++.+.+|+.-.|.+-|-++++|++.+..+ |++-||...+
T Consensus 34 ede~~~af~Di~P~~pgH~LVIPK~H~~~l~dL~~ee~~~l 74 (160)
T d1emsa1 34 STPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADL 74 (160)
T ss_dssp ECSSEEEEECSSCSSTTCEEEEESSCCSCGGGSCHHHHHHH
T ss_pred eCCCEEEEECCCCCCCCeEEEEEecccchhhhhhhHHHHHH
Confidence 578899999999988899999999999876 9998886543
No 5
>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]}
Probab=59.44 E-value=4.9 Score=30.46 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=32.1
Q ss_pred CCCeEEEEecCCCCCCceEEEEecCCeecC-CCCHHHHH
Q 025129 187 DEELCSVFVPTNHLYIGDIFLVSSKEIIRP-NLSIREGI 224 (257)
Q Consensus 187 ~~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvEeAm 224 (257)
.++...+|+|-+|..-|-+.++|++.+..+ |++-++..
T Consensus 38 e~e~~~af~~~~p~~p~h~lIiPk~h~~~~~~l~~~e~~ 76 (171)
T d1guqa2 38 ETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRS 76 (171)
T ss_dssp ECSSEEEECCTTCCSTTCEEEEESSCCSSGGGCCHHHHH
T ss_pred ECCeEEEEEcCCCCCcceEEEecchhcCChhhCCHHHHH
Confidence 468899999999988899999999999766 88876554
No 6
>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum [TaxId: 1515]}
Probab=53.70 E-value=2.7 Score=30.06 Aligned_cols=34 Identities=9% Similarity=0.135 Sum_probs=27.9
Q ss_pred CCCeEEEEecCCCCCCceEEEEecCCeecC-CCCH
Q 025129 187 DEELCSVFVPTNHLYIGDIFLVSSKEIIRP-NLSI 220 (257)
Q Consensus 187 ~~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-Dmsv 220 (257)
.++.+.+|++..|.+-|.++++|++.+..+ |++-
T Consensus 21 ede~~~af~d~~P~~~gH~LViPk~H~~~~~~l~~ 55 (113)
T d1xqua_ 21 EDERVIAIKDINPAAPVHVLIIPKEHIANVKEINE 55 (113)
T ss_dssp ECSSEEEEECSSCSSSEEEEEEESSCCSSGGGCCT
T ss_pred eCCCEEEEECCCCCCCceEEEeecccccchhhccc
Confidence 367889999999988999999999988665 5543
No 7
>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=49.29 E-value=9.9 Score=28.38 Aligned_cols=39 Identities=10% Similarity=0.171 Sum_probs=32.3
Q ss_pred CCCeEEEEecCCCCCCceEEEEecCCeecC-CCCHHHHHH
Q 025129 187 DEELCSVFVPTNHLYIGDIFLVSSKEIIRP-NLSIREGIE 225 (257)
Q Consensus 187 ~~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvEeAmk 225 (257)
.++...+|+|-+|..-|-+.++|++.+..+ |++-+|...
T Consensus 35 e~~~~~a~~p~~p~~p~h~lIiPk~h~~~~~~l~~~e~~~ 74 (156)
T d1z84a2 35 ESSHFVSVAPFAATYPFEIWIIPKDHSSHFHHLDDVKAVD 74 (156)
T ss_dssp ECSSEEEEECTTCSSTTCEEEEESSCCSCGGGCCHHHHHH
T ss_pred ECCCEEEEEccCCCcCcEEEEEecchhhhhccCCHHHHHH
Confidence 357899999999977899999999999876 888875443
No 8
>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.41 E-value=7 Score=27.72 Aligned_cols=36 Identities=11% Similarity=0.190 Sum_probs=29.6
Q ss_pred CCCeEEEEecCCCCCCceEEEEecCCeecC-CCCHHH
Q 025129 187 DEELCSVFVPTNHLYIGDIFLVSSKEIIRP-NLSIRE 222 (257)
Q Consensus 187 ~~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvEe 222 (257)
++|.+.+|+...|.+-|-++++|++.+..+ |++.|+
T Consensus 19 ede~~~af~D~~P~~~gH~LViPk~H~~~~~~l~~~~ 55 (111)
T d1kpfa_ 19 EDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDD 55 (111)
T ss_dssp ECSSEEEEECSSCSSSEEEEEEESSCCSCGGGCCGGG
T ss_pred eCCCEEEEecCCCCCCceEEEeecchhcchhhhhhHH
Confidence 367888899988988999999999988766 667654
No 9
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=26.76 E-value=32 Score=20.06 Aligned_cols=21 Identities=14% Similarity=0.429 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 025129 96 GFITSLVFVFLVGVFVSSWLG 116 (257)
Q Consensus 96 gll~~llli~liG~la~~~ig 116 (257)
++-..+++||++|++.++|+.
T Consensus 16 sLy~GlLlifvl~vLFssYfF 36 (37)
T d2axtl1 16 SLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhc
Confidence 444566788999999888753
No 10
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=26.47 E-value=35 Score=18.98 Aligned_cols=21 Identities=38% Similarity=0.722 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 025129 95 LGFITSLVFVFLVGVFVSSWL 115 (257)
Q Consensus 95 lgll~~llli~liG~la~~~i 115 (257)
.|+++.++=+.++|+++..|+
T Consensus 7 ~GivlGlipiTl~Glfv~Ayl 27 (30)
T d1q90g_ 7 CGIVLGLVPVTIAGLFVTAYL 27 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHhhHHHHHHHHHHHHHH
Confidence 477777788888998887653
Done!